Query 039062
Match_columns 871
No_of_seqs 266 out of 2588
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 05:58:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1241 Karyopherin (importin) 100.0 3E-105 7E-110 812.2 82.2 852 3-871 1-859 (859)
2 COG5215 KAP95 Karyopherin (imp 100.0 1.5E-82 3.2E-87 624.0 78.2 844 4-870 5-857 (858)
3 KOG2023 Nuclear transport rece 100.0 7.6E-76 1.7E-80 587.0 51.3 738 3-829 13-823 (885)
4 KOG2171 Karyopherin (importin) 100.0 6.3E-72 1.4E-76 600.3 73.1 791 3-867 4-914 (1075)
5 KOG1991 Nuclear transport rece 100.0 7.6E-35 1.6E-39 308.2 67.1 698 1-745 2-781 (1010)
6 KOG2171 Karyopherin (importin) 100.0 9.9E-36 2.2E-40 321.7 60.2 655 95-827 7-717 (1075)
7 KOG2023 Nuclear transport rece 100.0 4.6E-35 1E-39 294.7 41.8 720 36-867 9-817 (885)
8 KOG1241 Karyopherin (importin) 100.0 9.7E-32 2.1E-36 275.9 50.4 637 132-847 3-732 (859)
9 KOG1992 Nuclear export recepto 100.0 1.3E-30 2.8E-35 269.7 52.5 686 4-745 6-775 (960)
10 KOG2274 Predicted importin 9 [ 100.0 2.9E-29 6.3E-34 262.6 60.0 676 2-745 3-762 (1005)
11 KOG1824 TATA-binding protein-i 100.0 5.4E-27 1.2E-31 245.7 58.6 752 7-866 9-885 (1233)
12 KOG1993 Nuclear transport rece 100.0 7.9E-28 1.7E-32 247.9 49.2 643 5-700 2-750 (978)
13 KOG1824 TATA-binding protein-i 100.0 4.3E-25 9.3E-30 231.6 66.6 610 5-659 48-745 (1233)
14 COG5656 SXM1 Importin, protein 100.0 2.8E-24 6.2E-29 220.1 64.3 696 1-744 1-781 (970)
15 COG5215 KAP95 Karyopherin (imp 100.0 2.3E-25 5E-30 221.2 48.9 630 140-848 14-733 (858)
16 KOG0213 Splicing factor 3b, su 99.9 2.6E-22 5.6E-27 205.4 51.3 721 4-870 364-1110(1172)
17 KOG2021 Nuclear mRNA export fa 99.9 9.1E-22 2E-26 202.1 53.0 744 1-826 1-871 (980)
18 COG5181 HSH155 U2 snRNP splice 99.9 2.4E-21 5.1E-26 194.5 36.6 724 4-871 169-916 (975)
19 KOG2022 Nuclear transport rece 99.9 1.3E-16 2.9E-21 168.1 68.5 612 4-658 8-756 (982)
20 COG5101 CRM1 Importin beta-rel 99.9 9.6E-17 2.1E-21 162.3 64.2 521 5-557 16-672 (1053)
21 PLN03200 cellulose synthase-in 99.9 1.5E-18 3.3E-23 204.9 55.1 766 4-865 14-858 (2102)
22 KOG0213 Splicing factor 3b, su 99.9 9.2E-19 2E-23 179.7 43.4 572 187-870 374-957 (1172)
23 COG5657 CSE1 CAS/CSE protein i 99.9 6.6E-17 1.4E-21 171.5 49.3 679 5-745 6-761 (947)
24 KOG0915 Uncharacterized conser 99.9 2.5E-18 5.4E-23 190.6 37.3 554 218-867 817-1427(1702)
25 PLN03200 cellulose synthase-in 99.9 4.1E-17 9E-22 193.0 48.3 723 42-867 18-764 (2102)
26 COG5181 HSH155 U2 snRNP splice 99.8 3.9E-16 8.5E-21 157.5 40.4 634 103-835 292-959 (975)
27 KOG0915 Uncharacterized conser 99.8 4E-15 8.7E-20 165.7 50.7 596 85-835 811-1440(1702)
28 KOG1242 Protein containing ada 99.8 1.9E-15 4.1E-20 155.5 40.9 516 103-745 28-547 (569)
29 KOG1242 Protein containing ada 99.8 3.7E-15 8E-20 153.4 35.9 529 229-863 27-560 (569)
30 KOG1248 Uncharacterized conser 99.7 5.2E-11 1.1E-15 131.3 59.8 755 35-849 91-923 (1176)
31 KOG1991 Nuclear transport rece 99.7 9.9E-11 2.2E-15 126.6 59.9 604 142-824 15-801 (1010)
32 PF01602 Adaptin_N: Adaptin N 99.7 2.3E-13 5E-18 153.0 40.6 509 4-634 8-522 (526)
33 KOG2081 Nuclear transport regu 99.7 5.1E-13 1.1E-17 135.6 37.2 476 21-548 2-550 (559)
34 KOG0212 Uncharacterized conser 99.7 1.3E-13 2.9E-18 138.5 32.6 385 343-776 14-407 (675)
35 KOG0212 Uncharacterized conser 99.7 6E-14 1.3E-18 141.0 29.7 431 372-865 5-442 (675)
36 PF01602 Adaptin_N: Adaptin N 99.7 2.8E-11 6E-16 136.1 51.4 495 92-743 4-503 (526)
37 PTZ00429 beta-adaptin; Provisi 99.6 9.6E-11 2.1E-15 130.1 51.3 468 101-727 41-513 (746)
38 PTZ00429 beta-adaptin; Provisi 99.6 5.4E-11 1.2E-15 132.1 49.1 507 5-634 34-544 (746)
39 KOG0166 Karyopherin (importin) 99.6 7.5E-14 1.6E-18 143.2 24.1 399 374-822 73-485 (514)
40 KOG0211 Protein phosphatase 2A 99.6 8.1E-11 1.8E-15 128.9 41.2 544 91-724 120-667 (759)
41 KOG0166 Karyopherin (importin) 99.5 3.9E-12 8.4E-17 130.8 24.6 359 262-681 68-439 (514)
42 KOG2274 Predicted importin 9 [ 99.5 7.7E-08 1.7E-12 103.4 53.0 680 98-865 10-778 (1005)
43 KOG1248 Uncharacterized conser 99.4 7E-07 1.5E-11 99.6 58.7 705 92-868 93-899 (1176)
44 KOG0211 Protein phosphatase 2A 99.4 2.1E-09 4.5E-14 118.1 38.9 540 95-725 85-629 (759)
45 KOG1943 Beta-tubulin folding c 99.4 1.9E-07 4.2E-12 102.6 50.2 617 106-824 189-882 (1133)
46 COG5064 SRP1 Karyopherin (impo 99.4 9.6E-12 2.1E-16 117.3 15.0 319 370-723 74-400 (526)
47 KOG1992 Nuclear export recepto 99.3 1.6E-06 3.6E-11 92.6 50.8 648 8-742 93-815 (960)
48 KOG4535 HEAT and armadillo rep 99.3 2.2E-08 4.8E-13 99.5 34.6 590 144-779 9-657 (728)
49 KOG1060 Vesicle coat complex A 99.3 2.9E-08 6.4E-13 104.7 36.4 496 97-726 40-538 (968)
50 PRK09687 putative lyase; Provi 99.3 5.2E-10 1.1E-14 110.9 22.5 251 179-532 28-279 (280)
51 PF10508 Proteasom_PSMB: Prote 99.3 6.4E-09 1.4E-13 113.2 32.9 398 97-537 43-464 (503)
52 PRK13800 putative oxidoreducta 99.3 7.7E-10 1.7E-14 129.7 26.8 272 94-482 623-895 (897)
53 KOG1943 Beta-tubulin folding c 99.3 1.2E-06 2.6E-11 96.6 47.2 509 88-679 337-882 (1133)
54 KOG2020 Nuclear transport rece 99.2 1.1E-05 2.4E-10 92.1 53.0 143 4-162 11-164 (1041)
55 PRK13800 putative oxidoreducta 99.2 4.3E-09 9.3E-14 123.5 26.5 275 38-436 622-896 (897)
56 PRK09687 putative lyase; Provi 99.2 8.1E-09 1.8E-13 102.5 24.2 191 42-287 28-219 (280)
57 KOG1059 Vesicle coat complex A 99.2 1.3E-07 2.8E-12 99.1 33.2 175 96-290 185-366 (877)
58 KOG1060 Vesicle coat complex A 99.2 4E-07 8.7E-12 96.5 37.1 471 179-775 40-533 (968)
59 PF10508 Proteasom_PSMB: Prote 99.2 1.4E-07 3E-12 102.9 35.6 387 1-442 1-423 (503)
60 COG5064 SRP1 Karyopherin (impo 99.2 4.7E-10 1E-14 106.1 13.7 317 133-487 73-399 (526)
61 KOG1967 DNA repair/transcripti 99.1 2.7E-05 5.9E-10 84.7 52.3 220 620-865 787-1022(1030)
62 PF08506 Cse1: Cse1; InterPro 99.1 4.5E-08 9.7E-13 100.6 25.3 221 233-481 110-370 (370)
63 KOG1062 Vesicle coat complex A 99.1 3.6E-05 7.9E-10 82.6 45.9 432 173-726 106-549 (866)
64 KOG1020 Sister chromatid cohes 99.0 0.00013 2.8E-09 83.9 62.9 553 170-827 812-1409(1692)
65 COG5656 SXM1 Importin, protein 99.0 6.6E-05 1.4E-09 79.7 54.5 335 460-844 462-822 (970)
66 PF03810 IBN_N: Importin-beta 99.0 8E-10 1.7E-14 86.6 7.0 76 23-102 1-76 (77)
67 KOG1993 Nuclear transport rece 99.0 0.00012 2.5E-09 78.6 45.3 282 427-744 461-751 (978)
68 KOG1059 Vesicle coat complex A 98.9 0.00013 2.9E-09 77.3 44.6 252 217-538 142-401 (877)
69 KOG1062 Vesicle coat complex A 98.9 0.00015 3.4E-09 78.0 47.0 261 368-675 314-578 (866)
70 KOG0392 SNF2 family DNA-depend 98.9 0.00012 2.5E-09 82.5 44.8 179 624-828 750-930 (1549)
71 KOG4535 HEAT and armadillo rep 98.9 1E-06 2.2E-11 88.1 25.5 514 106-657 10-622 (728)
72 KOG1061 Vesicle coat complex A 98.9 6.2E-06 1.3E-10 88.4 33.2 254 5-287 51-306 (734)
73 KOG1240 Protein kinase contain 98.9 2.9E-07 6.3E-12 102.1 23.5 317 132-506 423-745 (1431)
74 COG5240 SEC21 Vesicle coat com 98.9 0.00014 3.1E-09 74.8 40.7 477 164-745 55-538 (898)
75 PF12460 MMS19_C: RNAPII trans 98.9 1.5E-06 3.3E-11 92.9 28.7 380 134-554 2-413 (415)
76 KOG1020 Sister chromatid cohes 98.8 0.00062 1.3E-08 78.6 52.4 145 92-249 816-961 (1692)
77 KOG4224 Armadillo repeat prote 98.8 1.5E-07 3.3E-12 90.4 16.6 416 386-866 66-492 (550)
78 KOG4224 Armadillo repeat prote 98.8 3.4E-07 7.4E-12 88.1 17.5 420 234-725 62-497 (550)
79 PF12460 MMS19_C: RNAPII trans 98.8 7.9E-06 1.7E-10 87.5 29.2 383 412-844 2-413 (415)
80 KOG1058 Vesicle coat complex C 98.8 3.1E-05 6.6E-10 82.3 32.1 419 351-864 39-460 (948)
81 PF12755 Vac14_Fab1_bd: Vacuol 98.8 7.5E-08 1.6E-12 77.2 9.9 92 383-484 2-94 (97)
82 PF12348 CLASP_N: CLASP N term 98.7 2.6E-07 5.6E-12 90.7 14.8 189 617-830 17-213 (228)
83 PF12348 CLASP_N: CLASP N term 98.7 4.7E-07 1E-11 88.9 16.0 183 658-870 16-209 (228)
84 COG5240 SEC21 Vesicle coat com 98.7 0.00074 1.6E-08 69.8 41.1 418 351-867 121-555 (898)
85 KOG1058 Vesicle coat complex C 98.6 0.00019 4.1E-09 76.5 31.9 432 10-538 27-466 (948)
86 KOG1077 Vesicle coat complex A 98.5 0.0025 5.4E-08 67.8 38.1 240 603-865 325-585 (938)
87 KOG1061 Vesicle coat complex A 98.5 7.3E-05 1.6E-09 80.5 26.7 431 5-534 88-527 (734)
88 KOG1240 Protein kinase contain 98.5 3.9E-05 8.5E-10 85.8 25.1 281 106-442 437-728 (1431)
89 PF12755 Vac14_Fab1_bd: Vacuol 98.4 2.3E-06 4.9E-11 68.8 10.0 91 578-676 4-94 (97)
90 KOG2259 Uncharacterized conser 98.4 0.0011 2.3E-08 70.1 31.4 292 187-539 169-515 (823)
91 KOG0168 Putative ubiquitin fus 98.4 0.00059 1.3E-08 73.9 29.4 417 380-848 181-653 (1051)
92 PF13513 HEAT_EZ: HEAT-like re 98.4 1E-06 2.3E-11 63.2 6.3 55 381-437 1-55 (55)
93 PF03378 CAS_CSE1: CAS/CSE pro 98.4 0.00011 2.4E-09 77.6 23.9 235 493-745 16-254 (435)
94 KOG2032 Uncharacterized conser 98.3 0.00019 4.1E-09 73.1 23.1 316 353-721 203-531 (533)
95 PF05804 KAP: Kinesin-associat 98.3 0.00024 5.1E-09 79.0 25.2 374 384-866 266-648 (708)
96 KOG1967 DNA repair/transcripti 98.3 0.011 2.4E-07 65.3 36.4 157 542-718 862-1021(1030)
97 PF08389 Xpo1: Exportin 1-like 98.3 5.2E-06 1.1E-10 75.2 9.8 130 106-243 2-148 (148)
98 KOG4413 26S proteasome regulat 98.2 0.0056 1.2E-07 59.0 29.7 295 109-441 60-379 (524)
99 cd00020 ARM Armadillo/beta-cat 98.2 5.9E-06 1.3E-10 71.7 9.2 109 368-485 8-119 (120)
100 KOG2956 CLIP-associating prote 98.2 8.1E-05 1.8E-09 75.1 17.7 203 369-651 289-493 (516)
101 KOG2021 Nuclear mRNA export fa 98.1 0.026 5.5E-07 61.0 47.2 211 620-835 453-738 (980)
102 PF14500 MMS19_N: Dos2-interac 98.1 0.00099 2.1E-08 65.4 21.7 246 372-655 4-257 (262)
103 KOG2022 Nuclear transport rece 98.1 0.033 7.1E-07 61.5 51.4 258 569-845 477-753 (982)
104 KOG1077 Vesicle coat complex A 98.1 0.028 6.1E-07 60.2 39.4 323 133-514 113-455 (938)
105 PF14500 MMS19_N: Dos2-interac 98.0 0.0012 2.6E-08 64.7 21.5 243 414-695 4-255 (262)
106 PF03378 CAS_CSE1: CAS/CSE pro 98.0 0.00018 3.8E-09 76.2 16.6 235 599-859 18-264 (435)
107 KOG4653 Uncharacterized conser 98.0 0.0012 2.5E-08 72.0 21.7 232 609-869 729-966 (982)
108 KOG1820 Microtubule-associated 98.0 0.00034 7.4E-09 78.6 17.9 194 646-870 251-446 (815)
109 KOG1410 Nuclear transport rece 97.9 0.047 1E-06 58.2 49.4 253 4-271 6-312 (1082)
110 KOG1078 Vesicle coat complex C 97.9 0.056 1.2E-06 59.0 39.8 414 350-866 118-531 (865)
111 KOG2956 CLIP-associating prote 97.9 0.0011 2.3E-08 67.3 18.7 192 219-442 287-480 (516)
112 KOG0891 DNA-dependent protein 97.9 0.16 3.5E-06 64.3 40.7 551 129-779 478-1045(2341)
113 KOG4413 26S proteasome regulat 97.9 0.0077 1.7E-07 58.1 22.9 291 349-680 63-379 (524)
114 COG5096 Vesicle coat complex, 97.9 0.079 1.7E-06 59.1 39.4 213 5-249 57-275 (757)
115 PF12717 Cnd1: non-SMC mitotic 97.9 0.00082 1.8E-08 62.4 16.3 133 144-289 1-139 (178)
116 KOG0168 Putative ubiquitin fus 97.9 0.0059 1.3E-07 66.6 24.3 421 232-699 181-652 (1051)
117 KOG0891 DNA-dependent protein 97.9 0.21 4.4E-06 63.5 53.4 116 601-717 642-759 (2341)
118 KOG2032 Uncharacterized conser 97.8 0.017 3.7E-07 59.4 25.2 278 114-439 236-531 (533)
119 KOG1078 Vesicle coat complex C 97.8 0.089 1.9E-06 57.5 38.1 472 84-678 56-532 (865)
120 KOG1525 Sister chromatid cohes 97.8 0.17 3.6E-06 60.4 46.5 369 91-515 47-436 (1266)
121 KOG2259 Uncharacterized conser 97.8 0.0039 8.4E-08 66.0 20.8 304 132-486 199-511 (823)
122 KOG4653 Uncharacterized conser 97.8 0.0048 1E-07 67.5 21.9 232 410-680 728-966 (982)
123 COG5096 Vesicle coat complex, 97.8 0.12 2.6E-06 57.8 41.6 166 187-397 30-196 (757)
124 PF05804 KAP: Kinesin-associat 97.7 0.02 4.4E-07 64.1 27.0 374 233-679 263-650 (708)
125 PF13513 HEAT_EZ: HEAT-like re 97.7 5.3E-05 1.1E-09 54.3 4.2 54 424-484 1-55 (55)
126 PF05918 API5: Apoptosis inhib 97.7 0.0078 1.7E-07 64.6 21.8 133 96-248 27-162 (556)
127 KOG1820 Microtubule-associated 97.7 0.00059 1.3E-08 76.7 13.8 204 605-835 251-456 (815)
128 PF13001 Ecm29: Proteasome sta 97.6 0.081 1.8E-06 58.1 29.9 384 5-438 25-487 (501)
129 PF13646 HEAT_2: HEAT repeats; 97.6 0.00083 1.8E-08 54.1 10.3 84 370-482 2-88 (88)
130 PLN03076 ARF guanine nucleotid 97.6 0.059 1.3E-06 66.8 29.8 194 52-256 1150-1384(1780)
131 PF08506 Cse1: Cse1; InterPro 97.5 0.04 8.6E-07 57.3 24.0 280 540-862 71-370 (370)
132 PF05004 IFRD: Interferon-rela 97.5 0.15 3.2E-06 51.9 27.2 196 222-442 46-260 (309)
133 KOG1293 Proteins containing ar 97.5 0.13 2.8E-06 55.2 27.0 143 379-537 389-535 (678)
134 PF04826 Arm_2: Armadillo-like 97.5 0.0028 6.1E-08 61.7 14.1 191 410-681 13-208 (254)
135 PF04826 Arm_2: Armadillo-like 97.5 0.008 1.7E-07 58.6 17.3 220 372-627 17-253 (254)
136 COG1413 FOG: HEAT repeat [Ener 97.5 0.15 3.3E-06 53.4 28.3 278 37-435 43-331 (335)
137 PLN03076 ARF guanine nucleotid 97.5 0.068 1.5E-06 66.3 28.3 321 128-467 1130-1511(1780)
138 PF10274 ParcG: Parkin co-regu 97.5 0.0017 3.6E-08 58.4 11.1 91 605-696 36-130 (183)
139 PF12717 Cnd1: non-SMC mitotic 97.4 0.011 2.4E-07 54.8 17.2 108 53-179 2-110 (178)
140 TIGR02270 conserved hypothetic 97.4 0.051 1.1E-06 57.3 23.4 242 130-485 53-295 (410)
141 cd00020 ARM Armadillo/beta-cat 97.4 0.00019 4.1E-09 62.2 4.7 111 607-720 7-119 (120)
142 PF08167 RIX1: rRNA processing 97.4 0.0065 1.4E-07 55.3 14.7 136 603-742 21-164 (165)
143 PF05004 IFRD: Interferon-rela 97.4 0.048 1E-06 55.4 22.0 195 96-290 47-258 (309)
144 PF02985 HEAT: HEAT repeat; I 97.4 0.00034 7.3E-09 42.7 4.0 30 410-440 1-30 (31)
145 KOG0392 SNF2 family DNA-depend 97.4 0.5 1.1E-05 54.9 47.4 158 127-290 71-238 (1549)
146 KOG2081 Nuclear transport regu 97.3 0.29 6.3E-06 51.7 31.6 243 607-870 199-460 (559)
147 KOG1525 Sister chromatid cohes 97.3 0.64 1.4E-05 55.7 42.0 147 220-397 260-406 (1266)
148 PF05918 API5: Apoptosis inhib 97.3 0.32 6.9E-06 52.7 28.1 312 221-594 25-346 (556)
149 KOG0413 Uncharacterized conser 97.3 0.51 1.1E-05 52.9 34.7 140 576-735 947-1089(1529)
150 PF01603 B56: Protein phosphat 97.2 0.027 5.8E-07 59.9 19.1 266 376-678 99-370 (409)
151 PF08167 RIX1: rRNA processing 97.2 0.0068 1.5E-07 55.1 12.5 137 128-268 22-163 (165)
152 COG1413 FOG: HEAT repeat [Ener 97.2 0.092 2E-06 55.0 23.0 247 130-484 42-302 (335)
153 KOG0946 ER-Golgi vesicle-tethe 97.2 0.28 6E-06 53.8 25.6 335 503-863 22-395 (970)
154 KOG0414 Chromosome condensatio 97.2 0.76 1.6E-05 53.2 52.6 109 605-723 917-1029(1251)
155 PF11864 DUF3384: Domain of un 97.2 0.56 1.2E-05 51.3 34.2 274 345-662 6-315 (464)
156 KOG0889 Histone acetyltransfer 97.1 1.7 3.6E-05 56.6 47.3 503 128-659 718-1329(3550)
157 TIGR02270 conserved hypothetic 97.1 0.29 6.3E-06 51.7 25.3 242 92-439 54-296 (410)
158 KOG0413 Uncharacterized conser 97.1 0.77 1.7E-05 51.6 39.0 142 664-842 946-1088(1529)
159 KOG1837 Uncharacterized conser 97.1 0.57 1.2E-05 55.8 28.5 62 806-870 1553-1614(1621)
160 PF13251 DUF4042: Domain of un 97.1 0.0083 1.8E-07 54.7 11.4 141 147-289 2-174 (182)
161 PF13646 HEAT_2: HEAT repeats; 97.1 0.0092 2E-07 47.9 10.8 86 95-201 2-88 (88)
162 KOG0946 ER-Golgi vesicle-tethe 97.1 0.73 1.6E-05 50.8 40.3 113 367-487 122-242 (970)
163 PF10274 ParcG: Parkin co-regu 97.0 0.0012 2.5E-08 59.4 5.6 96 647-745 37-136 (183)
164 KOG2062 26S proteasome regulat 96.9 0.89 1.9E-05 49.7 36.9 281 383-745 395-677 (929)
165 PF13251 DUF4042: Domain of un 96.9 0.0081 1.7E-07 54.7 10.0 142 107-250 1-176 (182)
166 PF11865 DUF3385: Domain of un 96.9 0.032 7E-07 50.2 13.7 151 646-825 8-159 (160)
167 KOG2025 Chromosome condensatio 96.9 0.92 2E-05 49.4 29.9 107 406-531 82-189 (892)
168 KOG1517 Guanine nucleotide bin 96.9 0.057 1.2E-06 60.7 17.8 223 236-487 487-733 (1387)
169 PF02985 HEAT: HEAT repeat; I 96.9 0.0015 3.4E-08 39.8 3.5 31 368-398 1-31 (31)
170 KOG1517 Guanine nucleotide bin 96.9 0.057 1.2E-06 60.8 17.5 227 3-250 426-673 (1387)
171 KOG1822 Uncharacterized conser 96.9 2 4.3E-05 52.6 34.1 239 410-677 877-1126(2067)
172 PF10521 DUF2454: Protein of u 96.8 0.038 8.3E-07 55.6 15.4 178 379-559 87-277 (282)
173 PF12054 DUF3535: Domain of un 96.8 0.084 1.8E-06 56.5 18.5 202 342-556 100-363 (441)
174 PF08623 TIP120: TATA-binding 96.8 0.0068 1.5E-07 54.1 8.4 132 642-779 3-151 (169)
175 KOG2025 Chromosome condensatio 96.8 1.1 2.4E-05 48.9 37.9 110 86-202 79-190 (892)
176 cd00256 VATPase_H VATPase_H, r 96.8 0.59 1.3E-05 49.3 23.7 271 576-865 117-423 (429)
177 KOG2933 Uncharacterized conser 96.7 0.072 1.6E-06 51.6 15.0 143 373-538 94-237 (334)
178 KOG1837 Uncharacterized conser 96.7 1.1 2.4E-05 53.5 26.9 102 708-833 1520-1621(1621)
179 KOG1293 Proteins containing ar 96.6 1.3 2.9E-05 47.8 35.9 140 519-679 390-534 (678)
180 PF08064 UME: UME (NUC010) dom 96.6 0.025 5.5E-07 46.8 10.0 95 603-700 7-106 (107)
181 PF01603 B56: Protein phosphat 96.6 0.43 9.3E-06 50.9 21.8 261 187-486 101-370 (409)
182 PF12719 Cnd3: Nuclear condens 96.6 0.37 8.1E-06 49.2 20.4 112 130-249 25-144 (298)
183 cd00256 VATPase_H VATPase_H, r 96.5 1.3 2.9E-05 46.7 23.6 309 369-721 104-425 (429)
184 smart00802 UME Domain in UVSB 96.4 0.047 1E-06 44.8 10.4 94 603-699 7-105 (107)
185 KOG2160 Armadillo/beta-catenin 96.4 0.083 1.8E-06 52.7 13.4 182 579-778 102-285 (342)
186 PF12719 Cnd3: Nuclear condens 96.3 0.33 7.1E-06 49.6 18.4 112 91-206 26-144 (298)
187 PF11865 DUF3385: Domain of un 96.3 0.054 1.2E-06 48.8 11.2 152 498-679 3-158 (160)
188 COG5098 Chromosome condensatio 96.2 2.4 5.1E-05 46.2 47.2 165 36-205 239-415 (1128)
189 PF04118 Dopey_N: Dopey, N-ter 96.2 0.25 5.5E-06 49.6 16.0 216 580-822 28-253 (307)
190 KOG2549 Transcription initiati 96.2 0.18 4E-06 53.0 15.3 178 220-418 208-392 (576)
191 KOG2933 Uncharacterized conser 96.1 0.43 9.4E-06 46.5 16.2 182 218-433 87-271 (334)
192 KOG2549 Transcription initiati 96.1 0.3 6.5E-06 51.5 16.2 135 606-745 206-351 (576)
193 PF08767 CRM1_C: CRM1 C termin 96.0 0.46 9.9E-06 48.7 17.5 148 500-662 68-228 (319)
194 PF04510 DUF577: Family of unk 96.0 0.48 1E-05 42.0 14.8 153 92-249 3-165 (174)
195 PF08767 CRM1_C: CRM1 C termin 96.0 1.4 3.1E-05 45.1 20.8 145 576-725 43-198 (319)
196 KOG2160 Armadillo/beta-catenin 95.9 0.87 1.9E-05 45.7 17.7 142 144-290 96-241 (342)
197 KOG2122 Beta-catenin-binding p 95.7 0.16 3.4E-06 59.5 13.6 320 509-862 241-596 (2195)
198 COG5116 RPN2 26S proteasome re 95.7 0.13 2.7E-06 54.0 11.6 152 370-558 519-673 (926)
199 KOG1243 Protein kinase [Genera 95.7 0.3 6.4E-06 53.2 14.8 191 216-442 327-518 (690)
200 PF13001 Ecm29: Proteasome sta 95.7 1 2.2E-05 49.6 19.7 212 50-286 248-485 (501)
201 COG5095 TAF6 Transcription ini 95.6 0.57 1.2E-05 45.1 14.7 118 628-745 257-384 (450)
202 KOG2149 Uncharacterized conser 95.6 0.25 5.4E-06 50.2 12.9 134 130-268 57-190 (393)
203 COG5098 Chromosome condensatio 95.6 4.6 0.0001 44.1 26.4 128 349-486 282-415 (1128)
204 PF08064 UME: UME (NUC010) dom 95.5 0.13 2.7E-06 42.7 9.1 79 660-742 26-105 (107)
205 KOG1851 Uncharacterized conser 95.5 8.3 0.00018 46.7 32.2 171 346-536 1504-1679(1710)
206 COG5101 CRM1 Importin beta-rel 95.5 4.6 9.9E-05 43.6 35.7 225 220-486 15-261 (1053)
207 PF11864 DUF3384: Domain of un 95.4 5.2 0.00011 43.8 35.7 295 146-485 5-329 (464)
208 COG5218 YCG1 Chromosome conden 95.4 0.82 1.8E-05 48.5 16.3 106 89-201 88-195 (885)
209 smart00802 UME Domain in UVSB 95.4 0.16 3.5E-06 41.7 9.1 93 645-741 8-104 (107)
210 PF01347 Vitellogenin_N: Lipop 95.3 3.4 7.4E-05 47.6 23.4 105 346-480 507-616 (618)
211 KOG2137 Protein kinase [Signal 95.3 0.82 1.8E-05 50.2 16.5 116 543-681 345-461 (700)
212 cd08050 TAF6 TATA Binding Prot 95.3 0.27 5.9E-06 50.8 12.8 84 313-396 251-340 (343)
213 KOG1851 Uncharacterized conser 95.2 10 0.00022 46.0 33.4 151 689-867 1525-1678(1710)
214 KOG1949 Uncharacterized conser 95.2 5.5 0.00012 43.7 21.7 150 220-396 175-331 (1005)
215 KOG2062 26S proteasome regulat 95.0 7.1 0.00015 43.2 42.9 287 457-828 412-700 (929)
216 KOG2137 Protein kinase [Signal 94.9 2.7 5.9E-05 46.4 18.9 206 580-827 293-500 (700)
217 PF10521 DUF2454: Protein of u 94.9 0.41 8.9E-06 48.2 12.5 145 601-745 113-277 (282)
218 KOG0414 Chromosome condensatio 94.8 11 0.00024 44.3 66.7 182 645-866 916-1102(1251)
219 PF10363 DUF2435: Protein of u 94.8 0.42 9E-06 38.2 9.6 76 176-256 5-80 (92)
220 KOG0567 HEAT repeat-containing 94.7 4.1 8.9E-05 39.1 19.9 120 40-203 6-127 (289)
221 KOG0567 HEAT repeat-containing 94.7 4.3 9.3E-05 39.0 17.6 60 366-437 217-278 (289)
222 COG5095 TAF6 Transcription ini 94.7 0.91 2E-05 43.8 13.1 100 727-835 271-372 (450)
223 PF08569 Mo25: Mo25-like; Int 94.5 6.5 0.00014 40.4 25.9 189 93-290 77-284 (335)
224 PF08161 NUC173: NUC173 domain 94.5 3.8 8.2E-05 38.4 16.9 182 621-821 14-197 (198)
225 smart00638 LPD_N Lipoprotein N 94.5 1.6 3.4E-05 49.7 17.6 138 363-531 393-541 (574)
226 KOG1949 Uncharacterized conser 94.5 1.1 2.3E-05 48.8 14.5 153 91-249 173-332 (1005)
227 KOG4524 Uncharacterized conser 94.5 12 0.00026 43.1 44.1 288 430-744 568-900 (1014)
228 PF03224 V-ATPase_H_N: V-ATPas 94.3 2.9 6.3E-05 43.1 17.3 227 619-862 69-309 (312)
229 cd08050 TAF6 TATA Binding Prot 94.2 1.1 2.4E-05 46.4 14.0 103 711-821 236-338 (343)
230 PF04118 Dopey_N: Dopey, N-ter 94.2 2.2 4.8E-05 43.0 15.5 168 626-823 27-201 (307)
231 PF12231 Rif1_N: Rap1-interact 94.0 9.5 0.00021 40.3 30.7 308 402-777 32-354 (372)
232 KOG2213 Apoptosis inhibitor 5/ 94.0 8 0.00017 39.3 23.2 257 52-361 37-317 (460)
233 KOG2759 Vacuolar H+-ATPase V1 93.8 9.1 0.0002 39.5 23.3 203 36-250 64-273 (442)
234 smart00638 LPD_N Lipoprotein N 93.8 15 0.00032 41.8 23.5 168 218-432 392-571 (574)
235 KOG2149 Uncharacterized conser 93.7 0.98 2.1E-05 46.1 12.0 133 609-744 60-193 (393)
236 KOG1243 Protein kinase [Genera 93.7 0.26 5.5E-06 53.7 8.3 186 37-249 330-516 (690)
237 PF10363 DUF2435: Protein of u 93.5 0.94 2E-05 36.2 9.3 80 372-468 8-87 (92)
238 PF14664 RICTOR_N: Rapamycin-i 93.5 11 0.00024 39.5 23.1 152 127-289 21-176 (371)
239 KOG4500 Rho/Rac GTPase guanine 93.3 11 0.00024 38.9 27.1 157 366-536 314-476 (604)
240 PF08623 TIP120: TATA-binding 93.1 0.38 8.2E-06 43.2 7.2 78 187-269 38-115 (169)
241 PF12530 DUF3730: Protein of u 93.1 9.3 0.0002 37.3 19.6 197 13-233 11-217 (234)
242 PF14664 RICTOR_N: Rapamycin-i 92.4 9.6 0.00021 40.0 17.5 224 11-252 33-273 (371)
243 COG5116 RPN2 26S proteasome re 92.0 2.9 6.4E-05 44.4 12.8 153 100-275 524-677 (926)
244 PF03224 V-ATPase_H_N: V-ATPas 91.8 4.8 0.0001 41.5 14.5 184 519-728 70-276 (312)
245 KOG0803 Predicted E3 ubiquitin 91.7 19 0.00042 43.9 20.8 224 178-423 45-289 (1312)
246 PF05536 Neurochondrin: Neuroc 91.7 26 0.00057 39.1 31.2 185 474-682 74-265 (543)
247 KOG2256 Predicted protein invo 91.6 24 0.00052 38.9 19.3 210 623-849 258-479 (661)
248 KOG2759 Vacuolar H+-ATPase V1 91.3 20 0.00044 37.1 22.1 71 648-722 366-439 (442)
249 KOG1048 Neural adherens juncti 91.3 11 0.00023 42.4 16.8 116 688-825 516-643 (717)
250 PF00514 Arm: Armadillo/beta-c 91.2 0.46 9.9E-06 31.2 4.2 29 409-438 12-40 (41)
251 PF12530 DUF3730: Protein of u 91.1 16 0.00034 35.7 20.6 208 461-702 3-215 (234)
252 PF12231 Rif1_N: Rap1-interact 90.9 24 0.00052 37.3 33.2 141 144-286 59-201 (372)
253 KOG1848 Uncharacterized conser 90.8 9.2 0.0002 45.7 16.3 192 622-824 901-1133(1610)
254 PF04510 DUF577: Family of unk 90.6 3.3 7.1E-05 37.0 9.9 156 648-823 3-164 (174)
255 PF05536 Neurochondrin: Neuroc 90.2 35 0.00076 38.1 35.6 186 274-489 71-264 (543)
256 KOG0929 Guanine nucleotide exc 90.2 23 0.00049 43.6 19.3 159 105-269 1050-1225(1514)
257 PF08389 Xpo1: Exportin 1-like 89.7 1.8 3.8E-05 38.7 8.2 126 345-481 4-148 (148)
258 KOG4524 Uncharacterized conser 89.5 48 0.001 38.5 51.9 273 525-827 567-880 (1014)
259 PF08569 Mo25: Mo25-like; Int 88.9 31 0.00066 35.6 21.2 191 218-440 75-284 (335)
260 KOG1822 Uncharacterized conser 88.2 83 0.0018 39.7 56.9 192 39-249 53-249 (2067)
261 PF11698 V-ATPase_H_C: V-ATPas 88.2 1.8 3.8E-05 36.2 6.2 71 130-205 42-115 (119)
262 COG5218 YCG1 Chromosome conden 88.0 44 0.00095 36.3 44.0 117 169-289 44-161 (885)
263 KOG0803 Predicted E3 ubiquitin 88.0 26 0.00057 42.8 18.0 233 607-851 41-289 (1312)
264 PF12830 Nipped-B_C: Sister ch 87.9 7.1 0.00015 36.5 11.0 80 176-263 10-89 (187)
265 PF08161 NUC173: NUC173 domain 87.7 25 0.00054 33.1 16.2 59 577-641 17-75 (198)
266 PF04388 Hamartin: Hamartin pr 87.7 16 0.00035 41.8 15.6 95 603-699 66-161 (668)
267 KOG3961 Uncharacterized conser 86.8 2.5 5.4E-05 38.8 6.8 93 608-702 115-210 (262)
268 PF07571 DUF1546: Protein of u 86.5 1.8 3.9E-05 34.7 5.3 56 341-396 18-78 (92)
269 PF12830 Nipped-B_C: Sister ch 86.4 28 0.00062 32.5 16.2 70 95-167 11-80 (187)
270 KOG3961 Uncharacterized conser 85.6 3.7 8E-05 37.7 7.2 89 650-741 116-207 (262)
271 KOG0889 Histone acetyltransfer 85.6 1.6E+02 0.0034 40.2 54.3 184 458-653 984-1172(3550)
272 PF00514 Arm: Armadillo/beta-c 85.4 1.8 4E-05 28.3 4.1 28 458-485 12-40 (41)
273 PF01347 Vitellogenin_N: Lipop 84.9 81 0.0018 36.4 24.2 132 93-245 432-586 (618)
274 KOG4199 Uncharacterized conser 84.2 49 0.0011 33.3 27.1 300 187-533 118-442 (461)
275 cd03568 VHS_STAM VHS domain fa 84.1 29 0.00063 30.6 12.3 77 605-681 35-113 (144)
276 PF11841 DUF3361: Domain of un 84.1 24 0.00053 31.5 11.4 102 146-252 32-135 (160)
277 cd03568 VHS_STAM VHS domain fa 83.9 16 0.00036 32.2 10.5 74 367-442 37-113 (144)
278 cd03569 VHS_Hrs_Vps27p VHS dom 83.9 16 0.00035 32.1 10.5 78 605-682 39-118 (142)
279 PF00790 VHS: VHS domain; Int 83.6 23 0.00051 31.1 11.5 78 604-681 39-121 (140)
280 KOG2085 Serine/threonine prote 83.3 61 0.0013 33.7 15.9 89 390-486 322-414 (457)
281 PF12054 DUF3535: Domain of un 82.3 79 0.0017 34.3 24.6 95 381-486 101-208 (441)
282 PF12783 Sec7_N: Guanine nucle 82.2 15 0.00032 33.7 10.2 98 623-721 38-146 (168)
283 PF12333 Ipi1_N: Rix1 complex 81.8 13 0.00028 30.5 8.6 61 599-659 3-64 (102)
284 PF12333 Ipi1_N: Rix1 complex 81.7 3.9 8.4E-05 33.6 5.5 63 494-559 2-65 (102)
285 PF11935 DUF3453: Domain of un 81.6 55 0.0012 32.0 14.4 89 174-264 43-161 (239)
286 PF12783 Sec7_N: Guanine nucle 81.5 43 0.00093 30.6 13.9 102 189-290 35-147 (168)
287 smart00288 VHS Domain present 81.5 19 0.00041 31.4 10.0 76 606-681 36-114 (133)
288 PF09324 DUF1981: Domain of un 81.3 20 0.00044 28.2 9.2 67 218-284 16-83 (86)
289 PF09324 DUF1981: Domain of un 81.2 7.8 0.00017 30.6 6.8 71 789-863 14-84 (86)
290 KOG2085 Serine/threonine prote 81.1 31 0.00067 35.6 12.3 91 581-676 320-412 (457)
291 PF12765 Cohesin_HEAT: HEAT re 80.9 2.9 6.2E-05 27.6 3.6 41 154-200 2-42 (42)
292 PF00790 VHS: VHS domain; Int 80.2 14 0.00029 32.6 8.8 90 646-736 40-134 (140)
293 PF11698 V-ATPase_H_C: V-ATPas 79.0 6 0.00013 33.2 5.6 69 792-865 43-113 (119)
294 PF12765 Cohesin_HEAT: HEAT re 78.9 3.4 7.3E-05 27.2 3.4 41 199-243 2-42 (42)
295 PF04388 Hamartin: Hamartin pr 78.6 49 0.0011 38.1 14.7 153 96-269 8-161 (668)
296 cd00197 VHS_ENTH_ANTH VHS, ENT 78.0 28 0.0006 29.4 9.8 74 363-437 33-113 (115)
297 PF12074 DUF3554: Domain of un 77.7 95 0.0021 32.4 18.8 87 383-486 3-90 (339)
298 PF08146 BP28CT: BP28CT (NUC21 77.6 53 0.0011 29.4 12.8 81 574-659 35-119 (153)
299 smart00288 VHS Domain present 77.6 25 0.00054 30.6 9.5 77 648-725 37-115 (133)
300 cd03561 VHS VHS domain family; 77.5 31 0.00066 30.1 10.1 78 605-682 35-116 (133)
301 KOG0929 Guanine nucleotide exc 77.5 2E+02 0.0043 36.0 21.9 103 187-290 1185-1299(1514)
302 PF11701 UNC45-central: Myosin 77.1 9.2 0.0002 34.5 6.9 129 344-482 20-155 (157)
303 cd03561 VHS VHS domain family; 76.7 17 0.00037 31.7 8.3 80 128-208 34-115 (133)
304 PF11919 DUF3437: Domain of un 76.6 5.7 0.00012 31.5 4.7 57 382-441 4-60 (90)
305 cd03569 VHS_Hrs_Vps27p VHS dom 76.1 43 0.00092 29.6 10.6 75 367-442 41-117 (142)
306 PF12397 U3snoRNP10: U3 small 75.5 21 0.00045 30.5 8.4 73 405-487 2-75 (121)
307 cd03572 ENTH_epsin_related ENT 75.4 19 0.00041 30.6 7.7 88 116-205 22-119 (122)
308 KOG1848 Uncharacterized conser 74.8 2.2E+02 0.0047 35.1 21.8 153 102-256 852-1034(1610)
309 PF14225 MOR2-PAG1_C: Cell mor 74.8 93 0.002 30.9 18.4 193 454-681 60-257 (262)
310 PF12074 DUF3554: Domain of un 74.7 1.1E+02 0.0025 31.8 18.1 114 147-274 3-121 (339)
311 PF14631 FancD2: Fanconi anaem 74.6 2.5E+02 0.0054 35.8 30.6 117 402-538 428-545 (1426)
312 smart00185 ARM Armadillo/beta- 74.5 5.3 0.00012 25.8 3.6 28 410-438 13-40 (41)
313 PF07571 DUF1546: Protein of u 74.4 10 0.00022 30.4 5.7 61 660-720 17-77 (92)
314 KOG4199 Uncharacterized conser 74.1 1E+02 0.0023 31.1 32.1 312 127-484 104-442 (461)
315 KOG1048 Neural adherens juncti 73.7 1.7E+02 0.0037 33.4 21.6 98 379-485 531-640 (717)
316 KOG2011 Sister chromatid cohes 73.6 2.1E+02 0.0045 34.4 23.9 63 181-249 294-356 (1048)
317 KOG4500 Rho/Rac GTPase guanine 72.5 1.3E+02 0.0028 31.6 32.3 202 503-724 315-522 (604)
318 cd03567 VHS_GGA VHS domain fam 72.4 49 0.0011 29.0 9.9 74 367-442 38-119 (139)
319 PF14668 RICTOR_V: Rapamycin-i 72.0 10 0.00022 28.6 4.9 57 383-442 3-61 (73)
320 KOG1222 Kinesin associated pro 71.8 1.4E+02 0.0031 31.7 25.5 139 710-866 520-662 (791)
321 KOG2973 Uncharacterized conser 71.2 25 0.00055 34.8 8.4 102 372-485 8-110 (353)
322 PF08146 BP28CT: BP28CT (NUC21 71.2 58 0.0013 29.2 10.4 104 668-774 40-146 (153)
323 PF08713 DNA_alkylation: DNA a 70.7 1E+02 0.0022 29.5 16.0 87 343-442 100-187 (213)
324 PF14631 FancD2: Fanconi anaem 70.5 3.1E+02 0.0067 35.0 28.2 167 673-869 418-585 (1426)
325 COG5657 CSE1 CAS/CSE protein i 70.4 2.2E+02 0.0047 33.3 44.2 130 138-283 11-146 (947)
326 cd03572 ENTH_epsin_related ENT 70.3 67 0.0015 27.3 10.3 82 688-775 36-119 (122)
327 cd03565 VHS_Tom1 VHS domain fa 70.2 49 0.0011 29.2 9.5 92 647-738 37-133 (141)
328 KOG1789 Endocytosis protein RM 69.6 2.5E+02 0.0053 33.5 20.5 138 147-289 1741-1883(2235)
329 KOG3036 Protein involved in ce 68.7 1.2E+02 0.0025 29.4 12.8 141 147-290 95-248 (293)
330 COG5369 Uncharacterized conser 68.0 1E+02 0.0022 33.3 12.5 112 607-721 431-545 (743)
331 PF03542 Tuberin: Tuberin; In 67.4 1.6E+02 0.0036 30.7 14.8 95 189-290 210-304 (356)
332 KOG2122 Beta-catenin-binding p 67.1 3.3E+02 0.0071 34.0 23.5 121 622-745 453-584 (2195)
333 PF11701 UNC45-central: Myosin 66.6 15 0.00032 33.2 5.7 127 144-284 18-154 (157)
334 cd03567 VHS_GGA VHS domain fam 66.5 39 0.00085 29.6 8.0 75 175-251 39-119 (139)
335 PF14868 DUF4487: Domain of un 63.6 2.5E+02 0.0054 31.4 24.5 96 344-442 243-338 (559)
336 KOG2229 Protein required for a 63.1 2.2E+02 0.0049 30.7 25.1 133 141-285 30-162 (616)
337 KOG2011 Sister chromatid cohes 62.5 2.5E+02 0.0055 33.7 15.5 147 131-288 282-434 (1048)
338 PF14668 RICTOR_V: Rapamycin-i 61.8 18 0.00039 27.4 4.4 55 811-867 4-58 (73)
339 PF10350 DUF2428: Putative dea 61.7 1.7E+02 0.0037 29.0 15.3 174 471-659 61-251 (255)
340 cd00197 VHS_ENTH_ANTH VHS, ENT 61.5 87 0.0019 26.3 9.3 76 127-204 33-114 (115)
341 KOG2199 Signal transducing ada 60.8 1.6E+02 0.0034 30.6 11.7 77 603-679 41-119 (462)
342 KOG3687 Tuberin - Rap/ran-GTPa 60.0 3.5E+02 0.0076 31.9 34.9 84 619-702 442-526 (1697)
343 COG5537 IRR1 Cohesin [Cell div 59.8 2.8E+02 0.0061 30.7 17.0 103 93-205 276-386 (740)
344 PF12397 U3snoRNP10: U3 small 59.2 1.1E+02 0.0024 26.0 10.9 74 363-441 2-76 (121)
345 KOG1789 Endocytosis protein RM 59.1 3.8E+02 0.0083 32.1 25.8 177 192-397 1741-1924(2235)
346 PF14961 BROMI: Broad-minded p 58.7 95 0.0021 37.4 11.3 75 177-255 164-238 (1296)
347 PF14961 BROMI: Broad-minded p 58.6 1.8E+02 0.0039 35.2 13.4 135 130-270 160-315 (1296)
348 PF08713 DNA_alkylation: DNA a 57.7 1.8E+02 0.0038 27.8 16.5 150 17-205 33-184 (213)
349 smart00185 ARM Armadillo/beta- 56.9 18 0.00039 23.2 3.5 27 459-485 13-40 (41)
350 PF04078 Rcd1: Cell differenti 56.3 1.1E+02 0.0023 30.0 9.6 140 149-290 68-219 (262)
351 KOG3036 Protein involved in ce 56.0 26 0.00056 33.5 5.3 72 792-865 124-195 (293)
352 PF14676 FANCI_S2: FANCI solen 55.7 1.5E+02 0.0034 26.6 10.0 121 111-244 37-157 (158)
353 PF12726 SEN1_N: SEN1 N termin 55.5 4.1E+02 0.0089 31.4 42.8 32 218-249 119-150 (727)
354 KOG2973 Uncharacterized conser 55.5 1.4E+02 0.003 30.0 10.2 105 178-289 7-111 (353)
355 KOG1823 DRIM (Down-regulated i 55.1 5.1E+02 0.011 32.3 29.1 53 406-469 561-613 (1364)
356 PHA01351 putative minor struct 54.1 3.6E+02 0.0079 30.3 18.1 27 675-701 126-152 (1070)
357 PF01465 GRIP: GRIP domain; I 53.7 29 0.00064 23.4 3.9 36 88-123 3-38 (46)
358 COG5369 Uncharacterized conser 53.0 1.8E+02 0.0039 31.6 11.2 73 130-205 472-545 (743)
359 PLN03205 ATR interacting prote 50.4 1.5E+02 0.0033 30.6 9.9 136 110-247 302-445 (652)
360 PF11919 DUF3437: Domain of un 49.5 12 0.00027 29.7 1.9 59 624-684 6-64 (90)
361 KOG2199 Signal transducing ada 49.3 2.1E+02 0.0045 29.7 10.6 75 366-442 44-121 (462)
362 PF10350 DUF2428: Putative dea 48.3 2.9E+02 0.0062 27.4 15.4 122 579-702 116-252 (255)
363 PF12612 TFCD_C: Tubulin foldi 48.0 2.4E+02 0.0052 26.5 12.4 31 646-677 5-35 (193)
364 PF14868 DUF4487: Domain of un 47.4 4.6E+02 0.0099 29.5 21.2 56 344-399 495-555 (559)
365 cd06561 AlkD_like A new struct 47.0 1.1E+02 0.0024 28.7 8.6 66 370-442 108-173 (197)
366 PF07539 DRIM: Down-regulated 47.0 90 0.0019 27.5 7.0 47 2-48 15-62 (141)
367 COG5209 RCD1 Uncharacterized p 46.1 1.7E+02 0.0037 27.7 8.7 97 149-247 118-217 (315)
368 COG5231 VMA13 Vacuolar H+-ATPa 45.8 33 0.00072 34.1 4.5 73 131-206 356-429 (432)
369 KOG1877 Putative transmembrane 45.8 3.1E+02 0.0068 31.9 12.5 103 665-777 72-176 (819)
370 PF14225 MOR2-PAG1_C: Cell mor 45.5 3.2E+02 0.0069 27.2 22.3 191 499-726 60-259 (262)
371 PF11841 DUF3361: Domain of un 43.9 2.4E+02 0.0053 25.3 11.1 97 191-289 32-131 (160)
372 KOG1087 Cytosolic sorting prot 43.5 1.2E+02 0.0025 33.0 8.5 76 607-682 38-116 (470)
373 smart00567 EZ_HEAT E-Z type HE 43.3 28 0.0006 20.7 2.4 16 381-396 1-16 (30)
374 PLN03205 ATR interacting prote 42.0 4.2E+02 0.0092 27.6 13.6 113 91-205 322-446 (652)
375 cd03565 VHS_Tom1 VHS domain fa 41.9 2.4E+02 0.0053 24.8 12.0 78 605-682 36-119 (141)
376 COG5543 Uncharacterized conser 41.8 3.6E+02 0.0079 31.6 12.0 157 235-398 788-953 (1400)
377 PF03130 HEAT_PBS: PBS lyase H 40.1 29 0.00063 20.1 2.1 14 426-439 1-14 (27)
378 PF04078 Rcd1: Cell differenti 39.9 39 0.00084 32.9 4.0 71 793-865 96-166 (262)
379 PF04499 SAPS: SIT4 phosphatas 39.8 2.3E+02 0.005 31.1 10.3 74 792-866 62-148 (475)
380 PF11640 TAN: Telomere-length 39.5 2.8E+02 0.006 24.9 9.3 88 97-185 9-118 (155)
381 PHA01351 putative minor struct 38.9 6.2E+02 0.014 28.6 17.7 37 824-862 241-281 (1070)
382 smart00755 Grip golgin-97, Ran 38.6 65 0.0014 21.8 3.7 34 89-123 3-36 (46)
383 COG4912 Predicted DNA alkylati 36.5 2.6E+02 0.0056 26.6 8.5 81 353-441 103-185 (222)
384 PF14764 SPG48: AP-5 complex s 36.3 5.9E+02 0.013 27.6 15.5 88 519-618 281-368 (459)
385 PF10193 Telomere_reg-2: Telom 34.8 2.8E+02 0.006 23.4 9.9 92 705-820 18-112 (114)
386 PF06371 Drf_GBD: Diaphanous G 34.6 1.1E+02 0.0025 28.3 6.4 60 187-247 127-186 (187)
387 PF04499 SAPS: SIT4 phosphatas 34.1 6.7E+02 0.015 27.6 14.3 32 606-637 61-93 (475)
388 cd07354 HN_L-delphilin-R1_like 32.1 1.9E+02 0.0042 22.2 5.6 47 2-48 5-52 (80)
389 KOG1087 Cytosolic sorting prot 31.0 1.4E+02 0.003 32.4 6.8 76 792-869 38-114 (470)
390 PF10487 Nup188: Nucleoporin s 30.7 1.1E+03 0.023 28.9 23.8 189 381-589 515-728 (931)
391 PF11707 Npa1: Ribosome 60S bi 30.7 6.3E+02 0.014 26.2 15.1 199 76-288 4-236 (330)
392 PF03542 Tuberin: Tuberin; In 30.0 6.7E+02 0.015 26.3 17.7 108 171-284 138-259 (356)
393 PF11640 TAN: Telomere-length 28.5 4.3E+02 0.0094 23.7 11.1 51 133-184 6-58 (155)
394 KOG2256 Predicted protein invo 28.4 9.1E+02 0.02 27.4 23.5 198 578-798 260-474 (661)
395 cd03562 CID CID (CTD-Interacti 28.4 3.1E+02 0.0067 22.9 7.4 66 789-858 34-99 (114)
396 PF01417 ENTH: ENTH domain; I 28.2 3.7E+02 0.008 23.0 7.9 62 343-408 17-82 (125)
397 PF05997 Nop52: Nucleolar prot 27.9 5.5E+02 0.012 24.7 16.2 46 7-52 4-57 (217)
398 PF11935 DUF3453: Domain of un 27.7 5.9E+02 0.013 24.9 14.8 104 187-290 4-146 (239)
399 KOG2005 26S proteasome regulat 26.6 9.9E+02 0.022 27.2 15.5 79 352-441 628-706 (878)
400 PF08045 CDC14: Cell division 26.4 6.4E+02 0.014 24.9 12.6 69 133-204 135-206 (257)
401 COG5537 IRR1 Cohesin [Cell div 26.2 9.7E+02 0.021 26.9 14.4 67 223-291 279-345 (740)
402 KOG3678 SARM protein (with ste 26.1 4.2E+02 0.0091 28.2 8.8 150 95-249 183-337 (832)
403 cd06561 AlkD_like A new struct 25.7 4E+02 0.0086 24.9 8.5 75 177-260 108-182 (197)
404 PF06371 Drf_GBD: Diaphanous G 25.5 2.4E+02 0.0051 26.2 6.9 57 379-438 128-186 (187)
405 PF14911 MMS22L_C: S-phase gen 25.3 8.2E+02 0.018 25.8 23.5 311 365-698 13-349 (373)
406 KOG2005 26S proteasome regulat 24.8 1.1E+03 0.023 27.0 16.7 120 367-512 415-537 (878)
407 KOG4646 Uncharacterized conser 24.6 4.7E+02 0.01 22.8 8.4 83 115-203 37-126 (173)
408 PF03810 IBN_N: Importin-beta 24.5 2.9E+02 0.0063 20.7 6.1 34 173-206 13-46 (77)
409 KOG4346 Uncharacterized conser 23.6 1.1E+03 0.025 26.9 15.1 286 502-827 507-842 (849)
410 cd00872 PI3Ka_I Phosphoinositi 23.2 5.9E+02 0.013 23.4 8.8 98 4-124 70-171 (171)
411 COG5209 RCD1 Uncharacterized p 22.1 1.1E+02 0.0024 28.9 3.5 71 793-865 146-216 (315)
412 PF07539 DRIM: Down-regulated 21.7 2E+02 0.0044 25.3 5.1 43 218-263 16-58 (141)
413 KOG1877 Putative transmembrane 21.5 1.4E+03 0.03 27.1 27.3 126 477-618 76-204 (819)
414 cd07064 AlkD_like_1 A new stru 21.4 7.2E+02 0.016 23.7 11.4 107 351-479 96-206 (208)
415 PF10441 Urb2: Urb2/Npa2 famil 21.1 7.5E+02 0.016 23.8 9.7 168 663-833 2-196 (223)
416 PF11262 Tho2: Transcription f 20.8 3.4E+02 0.0073 27.7 7.2 71 128-202 223-296 (298)
417 PF08324 PUL: PUL domain; Int 20.8 8.3E+02 0.018 24.2 11.9 145 382-535 78-231 (268)
418 PF03685 UPF0147: Uncharacteri 20.1 3.3E+02 0.0071 21.4 5.1 29 5-33 11-42 (85)
No 1
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-105 Score=812.22 Aligned_cols=852 Identities=52% Similarity=0.829 Sum_probs=793.3
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhc
Q 039062 3 MEVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRW 82 (871)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~ 82 (871)
|++.++|.+.+|||+.+|+.||++|.+++.+|.|.|+..|.++|.+.+.+...|..|++.|||.+..+.+..+..+...|
T Consensus 1 ~~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRW 80 (859)
T KOG1241|consen 1 MELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRW 80 (859)
T ss_pred CcHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChH-HHHHHHHHHHHHhhc
Q 039062 83 LSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAH-VKQATLETLGYLCEE 161 (871)
Q Consensus 83 ~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~-~r~~al~~l~~l~~~ 161 (871)
..++.+.|+++|..+++.|+++.+..++.|+++++.||..++|.+.||+++..|.....++.+. +|++++++++++|++
T Consensus 81 l~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~ 160 (859)
T KOG1241|consen 81 LQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED 160 (859)
T ss_pred HcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999999887655 999999999999999
Q ss_pred cCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHH
Q 039062 162 VSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFE 241 (871)
Q Consensus 162 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~ 241 (871)
..|+.+ ..+.+.++..+.++++..+++..||.+|+++|.+.+++.+.+|..+.+++.+++++++..+.+|.+++.+|+.
T Consensus 161 i~pevl-~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ 239 (859)
T KOG1241|consen 161 IDPEVL-EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQ 239 (859)
T ss_pred CCHHHH-HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHH
Confidence 988877 8899999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhhHHhHHH-HHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhh
Q 039062 242 CLVSISSTYYEKLAPYMQD-IYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPA 320 (871)
Q Consensus 242 ~l~~l~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (871)
||..++..||+++.+|+.+ ++...+..++++++++..++++||+++|+++.++.-++.+..+++....++.|.+..++.
T Consensus 240 ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~ 319 (859)
T KOG1241|consen 240 CLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQD 319 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhH
Confidence 9999999999999999986 999999999999999999999999999999999887776333322221257899999999
Q ss_pred hHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCCh
Q 039062 321 LVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSP 400 (871)
Q Consensus 321 l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~ 400 (871)
++|.|++.|.++++|+|+|+ |++.++|..||..++++.|+.++|.++||+++++++++|+.|++|.+++|++.++..+
T Consensus 320 v~P~Ll~~L~kqde~~d~Dd--Wnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~ 397 (859)
T KOG1241|consen 320 VVPVLLELLTKQDEDDDDDD--WNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP 397 (859)
T ss_pred hhHHHHHHHHhCCCCccccc--CcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch
Confidence 99999999999887776555 9999999999999999999999999999999999999999999999999999999877
Q ss_pred hhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCChHHHHHHHHH
Q 039062 401 DKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGA 480 (871)
Q Consensus 401 ~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~~ 480 (871)
+.+.+.+++.+|.++..+ .|++-.||.++.|++|++++.++.. ..+..++..+++.+++.+.|.|+|..++||+
T Consensus 398 ~~Lt~iV~qalp~ii~lm-~D~sl~VkdTaAwtlgrI~d~l~e~-----~~n~~~l~~~l~~l~~gL~DePrva~N~CWA 471 (859)
T KOG1241|consen 398 DKLTPIVIQALPSIINLM-SDPSLWVKDTAAWTLGRIADFLPEA-----IINQELLQSKLSALLEGLNDEPRVASNVCWA 471 (859)
T ss_pred hhhhHHHhhhhHHHHHHh-cCchhhhcchHHHHHHHHHhhchhh-----cccHhhhhHHHHHHHHHhhhCchHHHHHHHH
Confidence 889999999999999999 9999999999999999999998743 5678899999999999999999999999999
Q ss_pred HHHHHhhcccCCC----CCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 039062 481 LYFLAQGYEDVGP----SSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMEL 556 (871)
Q Consensus 481 l~~l~~~~~~~~~----~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l 556 (871)
+.+|++.+.+..+ .+...|+++.|+..|++.....+.++.++|.+|+++|+.+++..++.+.+.+.++.+.++..+
T Consensus 472 f~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl 551 (859)
T KOG1241|consen 472 FISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKL 551 (859)
T ss_pred HHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 9999987655432 336779999999999999988876688999999999999999999999999999999999999
Q ss_pred HHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHccc-CcchhhhHHHHHHHHH
Q 039062 557 HKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACR-SATVHEEAMLAIGALA 635 (871)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~a~~~l~~l~ 635 (871)
++.++.+..+.+|+..+.++++.+|.+|..+.++++++ +.++.+.+|..+++++++. +..+.+.|+.+++.++
T Consensus 552 ~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~------~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~ 625 (859)
T KOG1241|consen 552 DQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSD------IREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLA 625 (859)
T ss_pred HHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcccc------chhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHH
Confidence 99888777788888888899999999999999999987 8999999999999999994 5568899999999999
Q ss_pred HHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHH
Q 039062 636 YAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSC 715 (871)
Q Consensus 636 ~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~ 715 (871)
..+|..|.+|++.+.|++...+++..+..|...|+.++|++++.++.++.||.+.+|..|++.|+++..+.++|+.++++
T Consensus 626 ~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~ 705 (859)
T KOG1241|consen 626 ESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSV 705 (859)
T ss_pred HHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHH
Q 039062 716 FGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQ 795 (871)
Q Consensus 716 l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 795 (871)
+|+|+.++|.+|.+|++.+++++.++-+.+ .+..|.++.+|.+++|+++++++.++++.++..+....+.||++.|+.
T Consensus 706 FgDIAlaIg~~F~~Yl~~vm~llq~as~~~--~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~s 783 (859)
T KOG1241|consen 706 FGDIALAIGADFEPYLEMVMPLLQQASSVQ--TDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIIS 783 (859)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcc--CCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHH
Confidence 999999999999999999999999888544 334567788999999999999999999999866566778899999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHhcC
Q 039062 796 FLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINKAISV 871 (871)
Q Consensus 796 ~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (871)
++.++..+++.++.+..+|+++|||++..+|++..+++.+.+||..+|++...+.++..|+.|.||...|.|.++.
T Consensus 784 fi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~~A~wa~e~ikr~~~~ 859 (859)
T KOG1241|consen 784 FIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKDLARWATEEIKRQISQ 859 (859)
T ss_pred HHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcC
Confidence 9999998888889999999999999999999999999888889999999999999999999999999999998763
No 2
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.5e-82 Score=623.96 Aligned_cols=844 Identities=32% Similarity=0.475 Sum_probs=742.0
Q ss_pred HHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhc
Q 039062 4 EVTQVLLN-AQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRW 82 (871)
Q Consensus 4 ~l~~~l~~-~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~ 82 (871)
+|.++.++ .+|||+.+|..||++|.+++..+...|+..+.+.+++.+..++.|..|++.|||.+..+.+..+..+...|
T Consensus 5 ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW 84 (858)
T COG5215 5 EFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRW 84 (858)
T ss_pred HHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhh
Confidence 56677777 69999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCCh-HHHHHHHHHHHHHhhc
Q 039062 83 LSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPA-HVKQATLETLGYLCEE 161 (871)
Q Consensus 83 ~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~-~~r~~al~~l~~l~~~ 161 (871)
..++.|.|+++|...++.|.++.+...+++|++++.||+.+.|++.||+++..+.....++.+ ..+..++.++++.|+.
T Consensus 85 ~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces 164 (858)
T COG5215 85 LGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCES 164 (858)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999988765 4788899999999998
Q ss_pred cCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHH
Q 039062 162 VSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFE 241 (871)
Q Consensus 162 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~ 241 (871)
..|+.+ ....+.++-.+..+-..++++..+|.+|+++|.+...+...+|..+++++++++++++..+.+|.+++.+++.
T Consensus 165 ~~Pe~l-i~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafg 243 (858)
T COG5215 165 EAPEDL-IQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFG 243 (858)
T ss_pred cCHHHH-HHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHH
Confidence 867555 4566777777777666668999999999999999888888889888889999999999999999999999999
Q ss_pred HHHHHHHHhHHhhHHhHHH-HHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhh
Q 039062 242 CLVSISSTYYEKLAPYMQD-IYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPA 320 (871)
Q Consensus 242 ~l~~l~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (871)
|+..++..+|+++.+|+++ +..+..+.+++.++++...|++||+.+|+++.+..-+.+ +-+..+.....|.+..+..
T Consensus 244 Cl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~--~~pe~p~qn~~fa~aav~d 321 (858)
T COG5215 244 CLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDK--YLPEVPAQNHGFARAAVAD 321 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHh--hcccCchhhcchHHHHHHH
Confidence 9999999999999999984 788888899999999999999999999998775432211 0111111244677778888
Q ss_pred hHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCCh
Q 039062 321 LVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSP 400 (871)
Q Consensus 321 l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~ 400 (871)
++|.+++.|.++++|+++|+ |++.++|..||..+++..|+.++..++.|+.+++.+++|..|++|..++|++.++...
T Consensus 322 vlP~lL~LL~~q~ed~~~Dd--Wn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~ 399 (858)
T COG5215 322 VLPELLSLLEKQGEDYYGDD--WNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCE 399 (858)
T ss_pred HHHHHHHHHHhcCCCccccc--cchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccH
Confidence 99999999998888876554 9999999999999999999999989999999999999999999999999999999766
Q ss_pred hhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCChHHHHHHHHH
Q 039062 401 DKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGA 480 (871)
Q Consensus 401 ~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~~ 480 (871)
..+.+++++.+|.+...+ .|+.-.|+..+.||+|+++.+.+.. .....++...+..++..+.|+|++..+++|.
T Consensus 400 ~~lT~~V~qalp~i~n~m-~D~~l~vk~ttAwc~g~iad~va~~-----i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~ 473 (858)
T COG5215 400 DCLTKIVPQALPGIENEM-SDSCLWVKSTTAWCFGAIADHVAMI-----ISPCGHLVLEVSASLIGLMDCPFRSINCSWR 473 (858)
T ss_pred HHHHhhHHhhhHHHHHhc-ccceeehhhHHHHHHHHHHHHHHHh-----cCccccccHHHHHHHhhhhccchHHhhhHHH
Confidence 778899999999999999 9999999999999999999998643 3446678889999999999999999999999
Q ss_pred HHHHHhhcccC--CCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 039062 481 LYFLAQGYEDV--GPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHK 558 (871)
Q Consensus 481 l~~l~~~~~~~--~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~ 558 (871)
..++++++.+. ...+.+.+++..|+..|++......+ +.+.|..+++++++++..++....+.+..+.....+.+.+
T Consensus 474 ~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~N-e~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~ 552 (858)
T COG5215 474 KENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALN-ESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDE 552 (858)
T ss_pred HHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 99999987653 23678999999999999998766543 7789999999999999999999999999999999988888
Q ss_pred hhhc--cCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCc-chhhhHHHHHHHHH
Q 039062 559 TLEG--QKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSA-TVHEEAMLAIGALA 635 (871)
Q Consensus 559 ~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~~~~~a~~~l~~l~ 635 (871)
.++. +....+|.....+++...+..+..++.+.+++ +.+..+++++.+++++++.++ .+.+.++.+++.+.
T Consensus 553 ~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~------ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~ 626 (858)
T COG5215 553 CISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRD------IEDVEDQLMELFIRILESTKPTTAFGDVYTAISALS 626 (858)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC------cccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHH
Confidence 7652 22345666667789999999999999999988 888999999999999999744 46788999999999
Q ss_pred HHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHH
Q 039062 636 YAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSC 715 (871)
Q Consensus 636 ~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~ 715 (871)
..+++.|..|.++++|++.+.+.. .+..+...|+.++|+++..++.+|.+|.+.+|..|.+.++++..+.++|+.++++
T Consensus 627 ~sl~e~Fe~y~~~fiPyl~~aln~-~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSv 705 (858)
T COG5215 627 TSLEERFEQYASKFIPYLTRALNC-TDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSV 705 (858)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhcc-hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHH
Confidence 999999999999999999999954 4668999999999999999999999999999999999999998899999999999
Q ss_pred HHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHH
Q 039062 716 FGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQ 795 (871)
Q Consensus 716 l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 795 (871)
+|+|+.++|.+|.+|++.++-.+.++-...++. ++-.+.||...+++.+..++.++.....+ ....+.||+..|.+
T Consensus 706 FgDIAlaiga~F~~YL~~im~L~qqas~~~p~~--~~~~~~dy~~~~~~~v~~ayVgI~~~~~n--r~~~v~Pyv~sif~ 781 (858)
T COG5215 706 FGDIALAIGANFESYLDMIMMLFQQASELDPHS--DEVYVDDYRKNAVQLVNCAYVGIGDSSKN--RVRSVLPYVISIFH 781 (858)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCC--CceeHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHhhhHHHHHHH
Confidence 999999999999999999998888877665432 23344568889999999999999988763 46778999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHhc
Q 039062 796 FLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSS-KDHMIKESAEWARLAINKAIS 870 (871)
Q Consensus 796 ~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 870 (871)
.+-.+..|++-++..-++|+++||+++..+|++-.++..+.+||..+|+...+. ..+.-++.|-||..+-.+.++
T Consensus 782 ~i~~iaeDp~~se~~traalGLigDla~mfpkgelk~~~~~dWv~d~l~~~~~ki~sqqtkD~aRwa~eqvkrqlr 857 (858)
T COG5215 782 KIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELKFGLDEDWVKDFLYGMMKKISSQQTKDSARWAAEQVKRQLR 857 (858)
T ss_pred HHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchhhccchHHHHHHHHHHHHHhhhhhchhhHHHHHHHHHHHhc
Confidence 999888998877878889999999999999988555555556999999998863 456788889999888777664
No 3
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-76 Score=586.96 Aligned_cols=738 Identities=21% Similarity=0.350 Sum_probs=639.0
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCC-CCChhHHHHHHHHHHcccccchhhhHHHHhhh
Q 039062 3 MEVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELAND-DKPVDSRKLAGLILKNALDAKEQHRKFELVQR 81 (871)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~-~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~ 81 (871)
+|+.++|++.+|||+++|+.+...|.++... |.|..+|..|+.+. +.+..+|.+|+.+|||.++. +
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~--pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~-----------~ 79 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNLF--PDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRG-----------H 79 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcc--cchhceeeEEEecccccchhHHHHhhhhHhccccc-----------c
Confidence 4789999999999999999999999999987 99999999988764 55788999999999999984 5
Q ss_pred ccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhc
Q 039062 82 WLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEE 161 (871)
Q Consensus 82 ~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~ 161 (871)
|..++++.+.++|...++++++.++.||...+.+|+.|+...+ ...||+++|.|.+++.+++.+..++|+.+|++||+.
T Consensus 80 ~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~-~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcED 158 (885)
T KOG2023|consen 80 YNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGG-LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICED 158 (885)
T ss_pred ccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccc-cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhh
Confidence 6788899999999999999999999999999999999998863 379999999999999999999999999999999998
Q ss_pred cCCCccc----hhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHH
Q 039062 162 VSPDVVE----QDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQ 237 (871)
Q Consensus 162 ~~~~~~~----~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 237 (871)
. ++.+. ..-++.++|.+++.++ ++++.+|..|+.|+..++......+. ...+.+++.++.+.+++++++|+
T Consensus 159 s-a~~lds~~~~rpl~~mipkfl~f~~--h~spkiRs~A~~cvNq~i~~~~qal~--~~iD~Fle~lFalanD~~~eVRk 233 (885)
T KOG2023|consen 159 S-AQFLDSDVLTRPLNIMIPKFLQFFK--HPSPKIRSHAVGCVNQFIIIQTQALY--VHIDKFLEILFALANDEDPEVRK 233 (885)
T ss_pred h-HHHHhhhcccCchHHhHHHHHHHHh--CCChhHHHHHHhhhhheeecCcHHHH--HHHHHHHHHHHHHccCCCHHHHH
Confidence 7 55543 3567889999999999 89999999999999998765443332 13478999999999999999999
Q ss_pred HHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhh
Q 039062 238 AAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQA 317 (871)
Q Consensus 238 ~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (871)
..|..+.-+.+..++.+.||+..++++++...++.++++..+|++||.++++... ++..+.++
T Consensus 234 ~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi-----------------~~~~L~p~ 296 (885)
T KOG2023|consen 234 NVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPI-----------------CKEVLQPY 296 (885)
T ss_pred HHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcC-----------------cHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998631 45778999
Q ss_pred hhhhHHHHHHHHhcccCC----------------------------------------cc----ccc---ccccHhHHHH
Q 039062 318 LPALVPLLLEILLKQEED----------------------------------------QD----QEE---GAWNIAMAGG 350 (871)
Q Consensus 318 ~~~l~~~l~~~l~~~~~d----------------------------------------~~----~~~---~~~~~r~~a~ 350 (871)
++.++|+|+..|.+.++| ++ ||+ .+|++|++.+
T Consensus 297 l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSA 376 (885)
T KOG2023|consen 297 LDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSA 376 (885)
T ss_pred HHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccH
Confidence 999999999876653211 00 111 3599999999
Q ss_pred HHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHH
Q 039062 351 TCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTT 430 (871)
Q Consensus 351 ~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a 430 (871)
.+|+.++..+|++++|.++|++++.+.+++|.+|++++.++|+|+++| .+.+.+|++.++|++++.+ .|..|.||..+
T Consensus 377 AaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc-M~g~~p~LpeLip~l~~~L-~DKkplVRsIT 454 (885)
T KOG2023|consen 377 AALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGC-MQGFVPHLPELIPFLLSLL-DDKKPLVRSIT 454 (885)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH-hhhcccchHHHHHHHHHHh-ccCccceeeee
Confidence 999999999999999999999999999999999999999999999999 4899999999999999999 99999999999
Q ss_pred HHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHH
Q 039062 431 AWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLL 509 (871)
Q Consensus 431 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~ 509 (871)
||+|++++.|... ....+++.+++..+++.+-| +.+|+++||+++..+-+.- .+.|.||+..|++.+.
T Consensus 455 CWTLsRys~wv~~------~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A-----~~eLVp~l~~IL~~l~ 523 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQ------DSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEA-----GEELVPYLEYILDQLV 523 (885)
T ss_pred eeeHhhhhhhHhc------CChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc-----cchhHHHHHHHHHHHH
Confidence 9999999999864 23678999999999999888 8899999999999997643 6789999999999999
Q ss_pred HhhccCChhhhhHHHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHH
Q 039062 510 TVTHREDAGESRLRTAAYETLNEVVRSSTDE--TAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVI 587 (871)
Q Consensus 510 ~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 587 (871)
.++++++ .++++ -.++|+|++++.+|.. -..|++.+||++++.|+.. +++|++.++ +++|++++
T Consensus 524 ~af~kYQ--~KNLl-ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~l------sd~DKdLfP-----LLEClSsi 589 (885)
T KOG2023|consen 524 FAFGKYQ--KKNLL-ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELL------SDSDKDLFP-----LLECLSSI 589 (885)
T ss_pred HHHHHHh--hccee-hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhc------CcccchHHH-----HHHHHHHH
Confidence 9999886 45554 6899999999999854 4679999999999999875 467777666 88999999
Q ss_pred HHHhCCCCCchhhhhhhHHHHHHHHHHHHccc----------------CcchhhhHHHHHHHHHHHhhhhhhhhh--HhH
Q 039062 588 IQKLGSSEPTKYVFMQYADQIMGLFLRVFACR----------------SATVHEEAMLAIGALAYAAGLDFAKYM--PDF 649 (871)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~----------------~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~i 649 (871)
+..++.. |.||+++++...+.+++.. +.+..-.++..++.+++.+|..+.+.+ ..+
T Consensus 590 a~AL~~g------F~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl 663 (885)
T KOG2023|consen 590 ASALGVG------FLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNL 663 (885)
T ss_pred HHHHhcc------ccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccH
Confidence 9999988 9999999988888877631 222334588999999999999888877 358
Q ss_pred HHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHH
Q 039062 650 YKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEK 729 (871)
Q Consensus 650 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~ 729 (871)
...+..++++. .++||++++.++|++++.+.+.+.|++.++++.+...++.. +..+-.+|.+++|.|+..+|.++.+
T Consensus 664 ~~lll~C~~D~-~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~--~isv~nNA~WAiGeia~k~g~~~~~ 740 (885)
T KOG2023|consen 664 LDLLLQCLQDE-VPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPE--NISVCNNAIWAIGEIALKMGLKMKQ 740 (885)
T ss_pred HHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChh--hchHHHHHHHHHHHHHHHhchhhhh
Confidence 99999999865 67999999999999999999999999999999999877766 5677889999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHH
Q 039062 730 YLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDEL 809 (871)
Q Consensus 730 ~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 809 (871)
|+..++..+...++... . ...+-++..-+++.+... .++.+.|+++.++..+...++.- ++.+
T Consensus 741 ~v~~vl~~L~~iin~~~-----~------~~tllENtAITIGrLg~~-----~Pe~vAp~l~~f~~pWc~sl~~i-~Dne 803 (885)
T KOG2023|consen 741 YVSPVLEDLITIINRQN-----T------PKTLLENTAITIGRLGYI-----CPEEVAPHLDSFMRPWCTSLRNI-DDNE 803 (885)
T ss_pred HHHHHHHHHHHHhcccC-----c------hHHHHHhhhhhhhhhhcc-----CHHhcchhHHHHHHHHHHHhccc-ccch
Confidence 99999999988887541 1 144556666677777655 46778999999999998877653 4667
Q ss_pred HHHHHHHHHHHHHhHhcccc
Q 039062 810 VMKTAIGLLGDLADTLGSNA 829 (871)
Q Consensus 810 ~r~~a~~~l~~i~~~~~~~~ 829 (871)
-+..|+.=++.|.+.-+...
T Consensus 804 EK~sAFrG~c~mi~vNp~~v 823 (885)
T KOG2023|consen 804 EKESAFRGLCNMINVNPSGV 823 (885)
T ss_pred hHHHHHHHHHHheeeCchhh
Confidence 79999999999998876543
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-72 Score=600.30 Aligned_cols=791 Identities=21% Similarity=0.336 Sum_probs=644.7
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhc
Q 039062 3 MEVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRW 82 (871)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~ 82 (871)
++|.++++.+.|||+++|++||+.|+..... +.....|.+++.+ +.++++|++|++++|+.+. +.|
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~--~~~l~~L~~i~~~-~~~p~~Rq~aaVl~Rkl~~-----------~~w 69 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKT--EPLLPALAHILAT-SADPQVRQLAAVLLRKLLT-----------KHW 69 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhcc--cchHHHHHHHHhc-CCChHHHHHHHHHHHHHHH-----------HHh
Confidence 5699999999999999999999999865554 3377777787776 7899999999999999987 478
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhc
Q 039062 83 LSLDANVKTQIKTCLLNTLTSTV-ADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEE 161 (871)
Q Consensus 83 ~~~~~~~~~~i~~~ll~~l~~~~-~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~ 161 (871)
+.++.+.++.||..++.++..+. +.||++.|.+++.+++.++|. .||++++.|+++++|+++..|+.|+.+|..+.+.
T Consensus 70 ~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~ 148 (1075)
T KOG2171|consen 70 SRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPET 148 (1075)
T ss_pred hcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhh
Confidence 89999999999999999988876 899999999999999999995 9999999999999999999999999999999888
Q ss_pred cCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccC----hhhHHHHHHHHHHhhccCcHHHHH
Q 039062 162 VSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSN----DMERDYIMRVVCEATQSAELKIRQ 237 (871)
Q Consensus 162 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~----~~~~~~i~~~l~~~l~~~~~~~~~ 237 (871)
. +..+ +.|++.+.+.+.+++. |++..||.+|+++++.++.+.+.+-.. ....+.+++++-+.++.+|.+.-.
T Consensus 149 ~-~~~~-~~~~~~l~~lf~q~~~--d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~ 224 (1075)
T KOG2171|consen 149 F-GNTL-QPHLDDLLRLFSQTMT--DPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAK 224 (1075)
T ss_pred h-cccc-chhHHHHHHHHHHhcc--CCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHH
Confidence 8 6666 7899999999999999 676669999999999998876421111 112244666777778888888899
Q ss_pred HHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhC--CChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHH
Q 039062 238 AAFECLVSISSTYYEKLAPYMQDIYSITAKAVRE--DEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIK 315 (871)
Q Consensus 238 ~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (871)
.+++++..+++..|..+.+++..++++++....+ -++.+|..|++++..+.+....+.+. ..
T Consensus 225 ~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~----------------~~ 288 (1075)
T KOG2171|consen 225 SALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKK----------------LA 288 (1075)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhh----------------ch
Confidence 9999999999999999999999999999998865 46789999999999998874433221 22
Q ss_pred hhhhhhHHHHHHHHhcccCCc-------ccccccccHhHHHHHHHHHHHHHcC-CCcccchHHHHHhhhcCCChhhHHHH
Q 039062 316 QALPALVPLLLEILLKQEEDQ-------DQEEGAWNIAMAGGTCLGLVARTVG-DDIVPLVIPFIEENIAKPDWRQREAA 387 (871)
Q Consensus 316 ~~~~~l~~~l~~~l~~~~~d~-------~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~~a 387 (871)
.+...+++.++..++..++|+ .|||+.-+....|.+++++++..+| +.++|.+++.+...++|++|+.|+|+
T Consensus 289 ~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~Aa 368 (1075)
T KOG2171|consen 289 LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAA 368 (1075)
T ss_pred hhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHH
Confidence 356678888888777544441 1222234567789999999999995 77899999999999999999999999
Q ss_pred HHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhc
Q 039062 388 TYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSM 467 (871)
Q Consensus 388 ~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 467 (871)
+.+++.+++|| .+.+...++.+++.+++.+ +||+|+||++|+.++|+++..++ +.....+.+.+.|.|+..+
T Consensus 369 L~Als~i~EGc-~~~m~~~l~~Il~~Vl~~l-~DphprVr~AA~naigQ~stdl~------p~iqk~~~e~l~~aL~~~l 440 (1075)
T KOG2171|consen 369 LLALSVIAEGC-SDVMIGNLPKILPIVLNGL-NDPHPRVRYAALNAIGQMSTDLQ------PEIQKKHHERLPPALIALL 440 (1075)
T ss_pred HHHHHHHHccc-HHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHhhhhhhc------HHHHHHHHHhccHHHHHHh
Confidence 99999999999 5999999999999999999 99999999999999999999997 3556777777888999888
Q ss_pred cC--ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHH
Q 039062 468 KD--TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMV 545 (871)
Q Consensus 468 ~d--~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 545 (871)
.+ +++|+..|+.++.+|.+.+ .++.+.||++.+++..+..+.... .+.+|+.++.+|++++...+..|.+|+
T Consensus 441 d~~~~~rV~ahAa~al~nf~E~~----~~~~l~pYLd~lm~~~l~~L~~~~--~~~v~e~vvtaIasvA~AA~~~F~pY~ 514 (1075)
T KOG2171|consen 441 DSTQNVRVQAHAAAALVNFSEEC----DKSILEPYLDGLMEKKLLLLLQSS--KPYVQEQAVTAIASVADAAQEKFIPYF 514 (1075)
T ss_pred cccCchHHHHHHHHHHHHHHHhC----cHHHHHHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHhhhhHhHH
Confidence 76 7899999999999998765 478999999999997666665544 578999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHH---cccCcc
Q 039062 546 LQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVF---ACRSAT 622 (871)
Q Consensus 546 ~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l---~~~~~~ 622 (871)
+.+||.+.+.+.+.. .+| ...+|+..++|++.+...+|++. |.++..++++.++..- .+.+..
T Consensus 515 d~~Mp~L~~~L~n~~------~~d---~r~LrgktmEcisli~~AVGke~-----F~~~a~eliqll~~~~~~~~~~dd~ 580 (1075)
T KOG2171|consen 515 DRLMPLLKNFLQNAD------DKD---LRELRGKTMECLSLIARAVGKEK-----FLPLAEELIQLLLELQGSDQDDDDP 580 (1075)
T ss_pred HHHHHHHHHHHhCCC------chh---hHHHHhhHHHHHHHHHHHhhhhh-----hhHhHHHHHHHHHhhcccchhhccc
Confidence 999999999997752 122 34689999999999999999764 9999999999999884 334677
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCc-----------------------------------chhHHH
Q 039062 623 VHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFE-----------------------------------EYQVCA 667 (871)
Q Consensus 623 ~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~-----------------------------------~~~v~~ 667 (871)
.++..+.+|+++++.+|++|.||++.++|.+++..+-.+ ..+.+.
T Consensus 581 ~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~ 660 (1075)
T KOG2171|consen 581 LRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKE 660 (1075)
T ss_pred cHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHH
Confidence 899999999999999999999999999999998774210 023466
Q ss_pred HHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhcc-------ChHHhHHHHHHHHHH
Q 039062 668 VTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGE-------NFEKYLMYAMPMLQS 740 (871)
Q Consensus 668 ~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~-------~~~~~~~~i~~~l~~ 740 (871)
.|+..|+.++...++.|.||+.++++..+..+..- ++..+|.+++.++..+...... ...+....+.+.+..
T Consensus 661 ~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~-fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~ 739 (1075)
T KOG2171|consen 661 TACEALGEYAKELKEAFAPYVEQVVELMVPLLKFY-FHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIK 739 (1075)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999444444432 2678999999998888765421 222333444444444
Q ss_pred HHhhcccC-------------------------------------------------CC---CChhHHHH------HHHH
Q 039062 741 AADLSAHT-------------------------------------------------AN---VDDDMTEY------TNSL 762 (871)
Q Consensus 741 ~l~~~~~~-------------------------------------------------~~---~d~~~~~~------~~~~ 762 (871)
.+...++. ++ .|+|..++ ...+
T Consensus 740 ~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~l 819 (1075)
T KOG2171|consen 740 ALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYL 819 (1075)
T ss_pred HhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHH
Confidence 44433220 00 01111111 1123
Q ss_pred HHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHH
Q 039062 763 RNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDF 842 (871)
Q Consensus 763 r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~ 842 (871)
-..+.+.+..+++.. +..|.|++..+.+.+.+.+... .... |..+++++++++...|+...+|.+. +.++
T Consensus 820 l~~i~~i~~~l~k~~-----k~~f~p~f~~~~p~iv~~l~~~-~~~~-r~~av~~~~d~ie~~~~a~~~~~~~---~~p~ 889 (1075)
T KOG2171|consen 820 LDAISDILAALAKAL-----KGSFLPFFENFLPLIVKLLKSK-KTVA-RQWAVCIFDDLIEGCGEASAKYKER---FLPL 889 (1075)
T ss_pred HHHHHHHHHHHHHHc-----cccccHHHHHHHHHHHHHHhcC-CcHH-HHHHHHHHHHHHHhcccccchHHHH---HHHH
Confidence 445566666677664 4569999999999999999863 3444 9999999999999999999999998 5666
Q ss_pred HHHHHcCCChhhHHHHHHHHHHHHH
Q 039062 843 LNECLSSKDHMIKESAEWARLAINK 867 (871)
Q Consensus 843 l~~~~~~~~~~~~~~~~~~~~~~~~ 867 (871)
+.....+.+++||++|+|++|.+..
T Consensus 890 ~~~~~~d~~pEVRqaAsYGiGvlaq 914 (1075)
T KOG2171|consen 890 VLEALQDSDPEVRQAAAYGMGVLAQ 914 (1075)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 6666668999999999999998864
No 5
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-35 Score=308.22 Aligned_cols=698 Identities=15% Similarity=0.205 Sum_probs=497.4
Q ss_pred CccHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhh
Q 039062 1 MAMEVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQ 80 (871)
Q Consensus 1 ~~~~l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~ 80 (871)
|.+.+.++++++.++|++.|+.||++|++++++ |+|+..+++|+.+.+.+..+|+.|++.|||.|.++|+....+.
T Consensus 2 d~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~--pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g-- 77 (1010)
T KOG1991|consen 2 DLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQ--PGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPG-- 77 (1010)
T ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcC--CcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCC--
Confidence 467899999999999999999999999999999 9999999999999899999999999999999999998663111
Q ss_pred hccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhh
Q 039062 81 RWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCE 160 (871)
Q Consensus 81 ~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~ 160 (871)
.-..+.++.|..+|+.++..+......+|.+...++-.|...++| +.||++++.....+++++.....+||.++..+++
T Consensus 78 ~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k 156 (1010)
T KOG1991|consen 78 RPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFK 156 (1010)
T ss_pred CcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHH
Confidence 122588999999999999999999999999999999999999999 8999999999999999999999999999999998
Q ss_pred ccC---C---Cccc---hhhHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHhhhcc-hhcccChhhHHHHHHHHHHhhc
Q 039062 161 EVS---P---DVVE---QDHVNKILTAVVQGMNA-SEMNNDVRLAATRALYNALSFA-QANFSNDMERDYIMRVVCEATQ 229 (871)
Q Consensus 161 ~~~---~---~~~~---~~~~~~i~~~l~~~l~~-~~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~~~i~~~l~~~l~ 229 (871)
.+. . ..++ ...++.+.+...+.+.. +..+..+.+-.++++..++.+. +..+...+.....++.....++
T Consensus 157 ~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~ 236 (1010)
T KOG1991|consen 157 TYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILN 236 (1010)
T ss_pred HHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHc
Confidence 762 1 1120 22344444444444442 1345667788888888877653 3223322333444444444332
Q ss_pred c--------Cc---------HHHHHHHHHHHHHHHHHhHHh--------------hHHhHHHHHHHHHHHhh---C---C
Q 039062 230 S--------AE---------LKIRQAAFECLVSISSTYYEK--------------LAPYMQDIYSITAKAVR---E---D 272 (871)
Q Consensus 230 ~--------~~---------~~~~~~a~~~l~~l~~~~~~~--------------~~~~~~~l~~~~~~~~~---~---~ 272 (871)
. -| ++.++-|+..|..+.++++.. ...+...+++..+..+. . -
T Consensus 237 rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yl 316 (1010)
T KOG1991|consen 237 RPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYL 316 (1010)
T ss_pred CCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 1 12 346788999999999885421 12233344444444432 1 2
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHH-HHHHHHhcccCCcc---c----------
Q 039062 273 EEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVP-LLLEILLKQEEDQD---Q---------- 338 (871)
Q Consensus 273 ~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~l~~~~~d~~---~---------- 338 (871)
.+.+-..++.|+...+.... ..+++++++..++. +++..|+..++|.+ +
T Consensus 317 s~rvl~~~l~fl~~~Vs~~~-----------------twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~ 379 (1010)
T KOG1991|consen 317 SDRVLYYLLNFLEQCVSHAS-----------------TWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKF 379 (1010)
T ss_pred CHHHHHHHHHHHHHhccHHH-----------------HHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcC
Confidence 33444445555544433210 24566776665553 44556665554432 1
Q ss_pred --ccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhc--------CCChhhHHHHHHHHHHhhcCCCh-hhhhHHH
Q 039062 339 --EEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIA--------KPDWRQREAATYAFGSILEGPSP-DKLLHIV 407 (871)
Q Consensus 339 --~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~--------~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l 407 (871)
-++-++++.+|..++-.++..-|++.+|.+++++.+.++ ..+.+.+++|+.++|++++...+ ..++..+
T Consensus 380 Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m 459 (1010)
T KOG1991|consen 380 DIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM 459 (1010)
T ss_pred chhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH
Confidence 123457788899999999999999999999999887776 24578899999999999976432 2233444
Q ss_pred H-HHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhcc-C-ChHHHHHHHHHHHHH
Q 039062 408 N-VALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMK-D-TPNVAEKACGALYFL 484 (871)
Q Consensus 408 ~-~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d-~~~v~~~a~~~l~~l 484 (871)
. -+++.+++.+ +++....|..|||+++.+++.-- ..+..+...+....+++. | +--|+..|+.||..|
T Consensus 460 E~flv~hVfP~f-~s~~g~Lrarac~vl~~~~~~df--------~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~f 530 (1010)
T KOG1991|consen 460 EYFLVNHVFPEF-QSPYGYLRARACWVLSQFSSIDF--------KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSF 530 (1010)
T ss_pred HHHHHHHhhHhh-cCchhHHHHHHHHHHHHHHhccC--------CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHH
Confidence 3 3568999999 99999999999999999995432 235677888888888888 5 347888999999999
Q ss_pred HhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhc--
Q 039062 485 AQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEG-- 562 (871)
Q Consensus 485 ~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~-- 562 (871)
+.+.... ...+.++++++++.++.+.+..+. +....++..++...++...|+...+...+.+.+-...+.
T Consensus 531 I~~~~~~--~e~~~~hvp~~mq~lL~L~ne~En------d~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~ 602 (1010)
T KOG1991|consen 531 ISNQEQA--DEKVSAHVPPIMQELLKLSNEVEN------DDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSE 602 (1010)
T ss_pred Hhcchhh--hhhHhhhhhHHHHHHHHHHHhcch------hHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccC
Confidence 9876542 466999999999999999887653 346678889999999999999999988888877766543
Q ss_pred -cCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhh
Q 039062 563 -QKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLD 641 (871)
Q Consensus 563 -~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 641 (871)
...+.+|.. -....++.+++.+...+... +..+....+.+++.+..+|++.-.++.+.++.....+.... ++
T Consensus 603 ~~~~~~ddk~---iaA~GiL~Ti~Til~s~e~~---p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~-~~ 675 (1010)
T KOG1991|consen 603 DEDESDDDKA---IAASGILRTISTILLSLENH---PEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLS-KE 675 (1010)
T ss_pred CCCccchHHH---HHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhh-cc
Confidence 111222221 13344556666666666643 33444445566777777777766677777877777665443 56
Q ss_pred hhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhccc---ccHHHHHHHHHHHccCCCCCCcCCchHHHHHHH
Q 039062 642 FAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKIL---PYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGD 718 (871)
Q Consensus 642 ~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~---~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~ 718 (871)
+.|-+..+++.+...+++. ..+......-.+.++.......+. .|...+....-..+.+.+....-...|+..+..
T Consensus 676 Isp~mW~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~ 754 (1010)
T KOG1991|consen 676 ISPIMWGLLELILEVFQDD-GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEV 754 (1010)
T ss_pred cCHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 8888999999999988754 223334444445544443333322 245666666667777664455566779999999
Q ss_pred HHHhhccChHHhHHHHHHHHHHHHhhc
Q 039062 719 IALAIGENFEKYLMYAMPMLQSAADLS 745 (871)
Q Consensus 719 i~~~~~~~~~~~~~~i~~~l~~~l~~~ 745 (871)
++.+++.....|++.++......+...
T Consensus 755 iiL~~kg~~dq~iplf~~~a~~~l~~~ 781 (1010)
T KOG1991|consen 755 IILNCKGLLDQYIPLFLELALSRLTRE 781 (1010)
T ss_pred HHHHhcCcHhhHhHHHHHHHHHHHhcc
Confidence 999998888888888888888777663
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-36 Score=321.66 Aligned_cols=655 Identities=18% Similarity=0.232 Sum_probs=502.8
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcC-CChHHHHHHHHHHHHHhhccCCCccchhhHH
Q 039062 95 TCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQ-LPAHVKQATLETLGYLCEEVSPDVVEQDHVN 173 (871)
Q Consensus 95 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 173 (871)
..|++.|.+++..+|+.|-.++..+++.. . +++.|...+.. .++.+|..|...+.+++... ...++.+...
T Consensus 7 ~qLl~~l~spDn~vr~~Ae~~l~~~~~~~----~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~ 78 (1075)
T KOG2171|consen 7 EQLLQQLLSPDNEVRRQAEEALETLAKTE----P---LLPALAHILATSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQ 78 (1075)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHhhccc----c---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHH
Confidence 45777888999999999999999887653 1 67777776654 57889999999999888776 5555566778
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHh
Q 039062 174 KILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEK 253 (871)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 253 (871)
+|-+.++.++.. ++.+.||++-.+.+..+....-+ +.|+.+++.++++.+++++..|..|+..|..+...++..
T Consensus 79 siks~lL~~~~~-E~~~~vr~k~~dviAeia~~~l~-----e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 79 SIKSSLLEIIQS-ETEPSVRHKLADVIAEIARNDLP-----EKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc
Confidence 888888888876 78999999999999987754221 157999999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhccc
Q 039062 254 LAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQE 333 (871)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 333 (871)
+.+|++.+..++.+.+++++..+|..|...++.++..... ++. ....++..+|.++..+-+.+..++
T Consensus 153 ~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~-----------~~~--~~~~~~~llP~~l~vl~~~i~~~d 219 (1075)
T KOG2171|consen 153 LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLEN-----------NKS--EVDKFRDLLPSLLNVLQEVIQDGD 219 (1075)
T ss_pred cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhcc-----------chH--HHHHHHHHhHHHHHHhHhhhhccc
Confidence 9999999999999999998878999999998888775310 000 123455555555555544433211
Q ss_pred CCcccccccccHhHHHHHHHHHHHHHcCCCccc---chHHHHHhhhcC--CChhhHHHHHHHHHHhhcCCChhh---hhH
Q 039062 334 EDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVP---LVIPFIEENIAK--PDWRQREAATYAFGSILEGPSPDK---LLH 405 (871)
Q Consensus 334 ~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~---~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~~---~~~ 405 (871)
+ .....+.+++..+....|+-+-| .++++..+...+ -+-..|..|+.++..+++.. +.. ..+
T Consensus 220 ~---------~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A-p~~~k~~~~ 289 (1075)
T KOG2171|consen 220 D---------DAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA-PAMCKKLAL 289 (1075)
T ss_pred h---------HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh-HHHhhhchh
Confidence 1 23445667777777777654444 344444444444 34578999999999999873 332 334
Q ss_pred HHHHHHHHHHHHccCC----------------CcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC
Q 039062 406 IVNVALSFMLSALTKD----------------PNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD 469 (871)
Q Consensus 406 ~l~~i~~~l~~~l~~d----------------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d 469 (871)
+...+++.++..+ .| ....-...|..++.+++..+++ +..++.+++.+-..+..
T Consensus 290 ~~~~lv~~~l~~m-te~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g---------~~v~p~~~~~l~~~l~S 359 (1075)
T KOG2171|consen 290 LGHTLVPVLLAMM-TEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG---------KQVLPPLFEALEAMLQS 359 (1075)
T ss_pred hhccHHHHHHHhc-CCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh---------hhehHHHHHHHHHHhcC
Confidence 6677888887776 21 1112345677888899888863 45778888888888886
Q ss_pred -ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 039062 470 -TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQL 548 (871)
Q Consensus 470 -~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l 548 (871)
+|+-|.++..+|..+.+++ .+.+.+.+++|++.+++.++++ +++||.+|+.|+|.+.......+..+..+.
T Consensus 360 ~~w~~R~AaL~Als~i~EGc-----~~~m~~~l~~Il~~Vl~~l~Dp---hprVr~AA~naigQ~stdl~p~iqk~~~e~ 431 (1075)
T KOG2171|consen 360 TEWKERHAALLALSVIAEGC-----SDVMIGNLPKILPIVLNGLNDP---HPRVRYAALNAIGQMSTDLQPEIQKKHHER 431 (1075)
T ss_pred CCHHHHHHHHHHHHHHHccc-----HHHHHHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHhhhhhhcHHHHHHHHHh
Confidence 8999999999999999876 4677889999999999999988 679999999999999999998887777666
Q ss_pred HH-HHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHH-HHHHHHcccCcchhhh
Q 039062 549 VP-VIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMG-LFLRVFACRSATVHEE 626 (871)
Q Consensus 549 l~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~-~l~~~l~~~~~~~~~~ 626 (871)
++ .++..+.+. . -++++.+++.++-++...+.++ .+.||++.++. .+..+++++...+++.
T Consensus 432 l~~aL~~~ld~~-----------~-~~rV~ahAa~al~nf~E~~~~~-----~l~pYLd~lm~~~l~~L~~~~~~~v~e~ 494 (1075)
T KOG2171|consen 432 LPPALIALLDST-----------Q-NVRVQAHAAAALVNFSEECDKS-----ILEPYLDGLMEKKLLLLLQSSKPYVQEQ 494 (1075)
T ss_pred ccHHHHHHhccc-----------C-chHHHHHHHHHHHHHHHhCcHH-----HHHHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 65 455554332 1 1357888888888888776654 49999999999 5555666667789999
Q ss_pred HHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCc---chhHHHHHHHHHHHHHHHhh-hcccccHHHHHHHHHHHccCC
Q 039062 627 AMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFE---EYQVCAVTVGVVGDICRALE-EKILPYCDGIMTQLLKDLSSN 702 (871)
Q Consensus 627 a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~---~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~ 702 (871)
++.+|++++...+..|.||++.++|.+.+.+.+.+ ....|...+.|++-+...+| +.|.|+..+++..++..-.+.
T Consensus 495 vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~ 574 (1075)
T KOG2171|consen 495 AVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSD 574 (1075)
T ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999998754 34567788999999999999 889999999999998874221
Q ss_pred -CCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhH---------HHH--------------
Q 039062 703 -QLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDM---------TEY-------------- 758 (871)
Q Consensus 703 -~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~---------~~~-------------- 758 (871)
..+...+.+.+.+.+++++.+|++|.||++.++|.+.......++....|+++ .++
T Consensus 575 ~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Ts 654 (1075)
T KOG2171|consen 575 QDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTS 654 (1075)
T ss_pred hhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeeh
Confidence 22556788999999999999999999999999999999998876532111100 011
Q ss_pred HHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcc
Q 039062 759 TNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGS 827 (871)
Q Consensus 759 ~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~ 827 (871)
.-.-|+.+++.++.+...+ +..|.||+++.+...+..++- -.++++|.++..++..+++....
T Consensus 655 vl~eK~~A~~~Lv~~a~~l-----k~~F~pYve~v~~l~v~~l~f-~fhdgVR~aa~~~~p~ll~~~~~ 717 (1075)
T KOG2171|consen 655 VLDEKETACEALGEYAKEL-----KEAFAPYVEQVVELMVPLLKF-YFHDGVRKAAAESMPQLLTCALK 717 (1075)
T ss_pred hHHHHHHHHHHHHHHHHhh-----hhhhhhHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 1234677888888888774 456999999998855555543 37899999999999999987644
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-35 Score=294.75 Aligned_cols=720 Identities=15% Similarity=0.163 Sum_probs=522.1
Q ss_pred HHHHHHHHHHHhCC-CCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 039062 36 PSFLLSLSGELAND-DKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQ 114 (871)
Q Consensus 36 ~~~~~~l~~il~~~-~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~ 114 (871)
...+..+.+++.+. +++..+|..+-..+.+.-.. ++--+++. -++.-+.+.+...|..++-
T Consensus 9 e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~-----------------pdfnnYL~-~IL~~~~~~d~~~Rs~aGL 70 (885)
T KOG2023|consen 9 EQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLF-----------------PDFNNYLI-YILIRAKSEDVPTRSLAGL 70 (885)
T ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc-----------------cchhceee-EEEecccccchhHHHHhhh
Confidence 45666666767553 55677887776666553210 11111111 1122233455677888877
Q ss_pred HHHHHHhhhcCCCCchHH----HHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCH
Q 039062 115 VIAKVAGIELPQKQWPEL----IVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNN 190 (871)
Q Consensus 115 ~l~~i~~~~~~~~~~~~l----l~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 190 (871)
++..=.+..++. .-++. -..++..+.+.++.+|...=.++..|+... +..+++.+++.+.+.+. .++.
T Consensus 71 lLKNnvr~~~~~-~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~-----~~~~wpelLp~L~~~L~--s~d~ 142 (885)
T KOG2023|consen 71 LLKNNVRGHYNS-IPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTG-----GLQHWPELLPQLCELLD--SPDY 142 (885)
T ss_pred hHhccccccccC-CChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeeccc-----ccccchhHHHHHHHHhc--CCcc
Confidence 776655554431 11222 245556666667666655444444444432 14678999999999998 5666
Q ss_pred HHHHHHHHHHHHhhhcchhcccCh---hhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHH
Q 039062 191 DVRLAATRALYNALSFAQANFSND---MERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAK 267 (871)
Q Consensus 191 ~vr~~al~~l~~~~~~~~~~~~~~---~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 267 (871)
.....|+.+|+.+.+-....++.+ .-.+.+++.++++.+++++.+|..|+.|+..++-.....+..+++.+++.++.
T Consensus 143 n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFa 222 (885)
T KOG2023|consen 143 NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFA 222 (885)
T ss_pred cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHH
Confidence 777899999999876433322211 11256889999999999999999999999999988888888888889998888
Q ss_pred HhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhH
Q 039062 268 AVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAM 347 (871)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~ 347 (871)
...+.++++|...+..+.-+.+.. +..+.++++.++..++...+..++ ++.-
T Consensus 223 lanD~~~eVRk~vC~alv~Llevr-------------------~dkl~phl~~IveyML~~tqd~dE---------~VAL 274 (885)
T KOG2023|consen 223 LANDEDPEVRKNVCRALVFLLEVR-------------------PDKLVPHLDNIVEYMLQRTQDVDE---------NVAL 274 (885)
T ss_pred HccCCCHHHHHHHHHHHHHHHHhc-------------------HHhcccchHHHHHHHHHHccCcch---------hHHH
Confidence 889999999999888777776642 223556666777777665433221 2333
Q ss_pred HHHHHHHHHHHHc-CC----CcccchHHHHHhhh----------c-----------------------------------
Q 039062 348 AGGTCLGLVARTV-GD----DIVPLVIPFIEENI----------A----------------------------------- 377 (871)
Q Consensus 348 ~a~~~l~~l~~~~-~~----~~~~~l~~~l~~~l----------~----------------------------------- 377 (871)
.|.+..-.+++.- .. ..++.++|.+.+.+ .
T Consensus 275 EACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eD 354 (885)
T KOG2023|consen 275 EACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDED 354 (885)
T ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccc
Confidence 3444333333321 10 11112222211110 0
Q ss_pred -C----------CChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCC
Q 039062 378 -K----------PDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTI 446 (871)
Q Consensus 378 -~----------~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~ 446 (871)
+ .+|+.|..+..++..++...+ +. .++.++|.+-..+ .++...||+++..++|.+++.+.
T Consensus 355 dddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~-~e---lL~~l~PlLk~~L-~~~~W~vrEagvLAlGAIAEGcM---- 425 (885)
T KOG2023|consen 355 DDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG-DE---LLPILLPLLKEHL-SSEEWKVREAGVLALGAIAEGCM---- 425 (885)
T ss_pred ccccccccccccccccHhhccHHHHHHHHHhhH-HH---HHHHHHHHHHHHc-CcchhhhhhhhHHHHHHHHHHHh----
Confidence 0 139999999999999998774 33 4677899999999 99999999999999999999986
Q ss_pred CCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHH
Q 039062 447 GTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTA 525 (871)
Q Consensus 447 ~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~ 525 (871)
.....+++.++|.+++.|.| .|-||+-.||+|+++...+.. +.-..|+.+++..+++.+-+. +++|+++
T Consensus 426 ---~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~----~~~~~~f~pvL~~ll~~llD~---NK~VQEA 495 (885)
T KOG2023|consen 426 ---QGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQ----DSRDEYFKPVLEGLLRRLLDS---NKKVQEA 495 (885)
T ss_pred ---hhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhc----CChHhhhHHHHHHHHHHHhcc---cHHHHHH
Confidence 34567899999999999998 678999999999999877643 223467788888888776655 6789999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhH
Q 039062 526 AYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYA 605 (871)
Q Consensus 526 a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 605 (871)
|+.++.++....++...||+..++..+...+..+-. ..+ ..+..+++.++..+|..-. -..|.
T Consensus 496 AcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~------------KNL-lILYDAIgtlAdsvg~~Ln----~~~Yi 558 (885)
T KOG2023|consen 496 ACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQK------------KNL-LILYDAIGTLADSVGHALN----KPAYI 558 (885)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhh------------cce-ehHHHHHHHHHHHHHHhcC----cHHHH
Confidence 999999999999999999999999999998877621 112 2367788888888875410 23578
Q ss_pred HHHHHHHHHHHccc--CcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcC---------------CcchhHHHH
Q 039062 606 DQIMGLFLRVFACR--SATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQN---------------FEEYQVCAV 668 (871)
Q Consensus 606 ~~i~~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~---------------~~~~~v~~~ 668 (871)
+.++|.+++-++.- +..---.-++++++++.++|..|.||.+.+.....+.++. ..+.+....
T Consensus 559 qiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~ 638 (885)
T KOG2023|consen 559 QILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIV 638 (885)
T ss_pred HHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEE
Confidence 88899998876542 2222345789999999999999999998776655544431 012344557
Q ss_pred HHHHHHHHHHHhhhcccccH--HHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcc
Q 039062 669 TVGVVGDICRALEEKILPYC--DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSA 746 (871)
Q Consensus 669 a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~ 746 (871)
++.+++.+++.++..+.+.+ .+++..++.++.++ -++||+.++..+|++++.+.+...|++..+++.+...+...
T Consensus 639 sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~--~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~- 715 (885)
T KOG2023|consen 639 SLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDE--VPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPE- 715 (885)
T ss_pred eHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccC--ChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChh-
Confidence 89999999999998877765 57999999999988 78999999999999999999999999999999998544321
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhc
Q 039062 747 HTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLG 826 (871)
Q Consensus 747 ~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~ 826 (871)
..++-.+++-+++.+...++ ...++|+..++..+..+++.++...++.+...-++|.++...|
T Consensus 716 ------------~isv~nNA~WAiGeia~k~g-----~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~P 778 (885)
T KOG2023|consen 716 ------------NISVCNNAIWAIGEIALKMG-----LKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICP 778 (885)
T ss_pred ------------hchHHHHHHHHHHHHHHHhc-----hhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCH
Confidence 25566678888988888865 3467999999999888888778888999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHHHH
Q 039062 827 SNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINK 867 (871)
Q Consensus 827 ~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 867 (871)
..++|+++. |+.+.+..+..=+|-.-++.|=.+++.|=+
T Consensus 779 e~vAp~l~~--f~~pWc~sl~~i~DneEK~sAFrG~c~mi~ 817 (885)
T KOG2023|consen 779 EEVAPHLDS--FMRPWCTSLRNIDDNEEKESAFRGLCNMIN 817 (885)
T ss_pred HhcchhHHH--HHHHHHHHhcccccchhHHHHHHHHHHhee
Confidence 999999998 899999999977888888888888887744
No 8
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-32 Score=275.91 Aligned_cols=637 Identities=16% Similarity=0.184 Sum_probs=463.6
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcc
Q 039062 132 LIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANF 211 (871)
Q Consensus 132 ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~ 211 (871)
++..|.+ ..++|..+|..|-.-|..+.. +.+++++..+.+.+.+...+...|.+|.-.|++.+...+...
T Consensus 3 ~~~~le~-tlSpD~n~~~~Ae~~l~~~~~---------~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~ 72 (859)
T KOG1241|consen 3 LLELLEK-TLSPDQNVRKRAEKQLEQAQS---------QNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPER 72 (859)
T ss_pred HHHHHHH-HcCCCcchHHHHHHHHHHHHh---------ccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHH
Confidence 3444555 678888899999888877643 456777778888888766788999999999998764322111
Q ss_pred c----------ChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHh--HHhhHHhHHHHHHHHHHHhhCCChh-HHH
Q 039062 212 S----------NDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTY--YEKLAPYMQDIYSITAKAVREDEEP-VAL 278 (871)
Q Consensus 212 ~----------~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~-~~~ 278 (871)
. ..+.+..+.+.+...+.++.+.....|.+++..++... ...|. +++..+.....+..+. ++.
T Consensus 73 k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp----~li~~lv~nv~~~~~~~~k~ 148 (859)
T KOG1241|consen 73 KQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWP----ELIVTLVSNVGEEQASMVKE 148 (859)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCH----HHHHHHHHhcccccchHHHH
Confidence 1 12345667888888898899999999999999998652 23333 3444444455555444 777
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHH
Q 039062 279 QAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVAR 358 (871)
Q Consensus 279 ~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~ 358 (871)
.+++.++.+|+.. .+.........++..++.-+...+. +-.+|-+|..+|-.-.+
T Consensus 149 ~slealGyice~i------------------~pevl~~~sN~iLtaIv~gmrk~e~-------s~~vRLaa~~aL~nsLe 203 (859)
T KOG1241|consen 149 SSLEALGYICEDI------------------DPEVLEQQSNDILTAIVQGMRKEET-------SAAVRLAALNALYNSLE 203 (859)
T ss_pred HHHHHHHHHHccC------------------CHHHHHHHHhHHHHHHHhhccccCC-------chhHHHHHHHHHHHHHH
Confidence 8899999998852 1122333334444445544443222 24789888888755433
Q ss_pred HcC-----CCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHH-HHHHHHHHccCCCcHHHHHHHHH
Q 039062 359 TVG-----DDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNV-ALSFMLSALTKDPNNHVKDTTAW 432 (871)
Q Consensus 359 ~~~-----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~-i~~~l~~~l~~d~~~~vr~~a~~ 432 (871)
..+ +.=...+++.+.+..++++-++|.+|+.||-.|+.-. ++.+.+|+.+ +++..+..+ +++++.|.-.++.
T Consensus 204 f~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~Ly-Y~~m~~yM~~alfaitl~am-ks~~deValQaiE 281 (859)
T KOG1241|consen 204 FTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLY-YEFMEPYMEQALFAITLAAM-KSDNDEVALQAIE 281 (859)
T ss_pred HHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHH
Confidence 322 2223456666777888899999999999999999876 5889999865 889999999 9999988766655
Q ss_pred HHHHHhhhhc-----------cCCC-CCCccchhhHHHHHHHHHHhccC--------ChHHHHHHHHHHHHHHhhcccCC
Q 039062 433 TLGRIFEFLH-----------GSTI-GTPIITQANCQQIITVLLQSMKD--------TPNVAEKACGALYFLAQGYEDVG 492 (871)
Q Consensus 433 ~l~~~~~~~~-----------~~~~-~~~~~~~~~~~~il~~l~~~l~d--------~~~v~~~a~~~l~~l~~~~~~~~ 492 (871)
.-+.+++.-- ...+ .+..+....++.++|.|++.|.. .|++..+|..||.-+++.+++..
T Consensus 282 FWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~I 361 (859)
T KOG1241|consen 282 FWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDI 361 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccc
Confidence 5445554211 1111 11223345566788888887762 36666666666666665543320
Q ss_pred ----------------------------------CCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcC
Q 039062 493 ----------------------------------PSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSST 538 (871)
Q Consensus 493 ----------------------------------~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~ 538 (871)
..+.+.|++...++.+++...++ .-.+|..+..++|.+++..+
T Consensus 362 v~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~---sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 362 VPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP---SLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred hhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc---hhhhcchHHHHHHHHHhhch
Confidence 24556666777777777777654 33678899999999999998
Q ss_pred CCc--HHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCC---chhhhhhhHHHHHHHHH
Q 039062 539 DET--APMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEP---TKYVFMQYADQIMGLFL 613 (871)
Q Consensus 539 ~~~--~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~~~i~~~l~ 613 (871)
+.. ..+.+..++.+++-+++. +++...+|+++..+++......+ ..+...|+++.|+..++
T Consensus 439 e~~~n~~~l~~~l~~l~~gL~De--------------Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll 504 (859)
T KOG1241|consen 439 EAIINQELLQSKLSALLEGLNDE--------------PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLL 504 (859)
T ss_pred hhcccHhhhhHHHHHHHHHhhhC--------------chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHH
Confidence 543 456677777777776542 46788899999999987653211 11234478889999888
Q ss_pred HHHcc---cCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcC--------Cc----chhHHHHHHHHHHHHHH
Q 039062 614 RVFAC---RSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQN--------FE----EYQVCAVTVGVVGDICR 678 (871)
Q Consensus 614 ~~l~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~--------~~----~~~v~~~a~~~l~~l~~ 678 (871)
..-+. +++.+|.+++++|+.+++...+...+.+..+.+.+...+.. .+ -.+++...+.+|+.+.+
T Consensus 505 ~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~r 584 (859)
T KOG1241|consen 505 KVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIR 584 (859)
T ss_pred hhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 87665 46679999999999999999988877776666655543321 11 12456688899999999
Q ss_pred HhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHH
Q 039062 679 ALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEY 758 (871)
Q Consensus 679 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~ 758 (871)
.++.++.++.+.+|..+++.+++.. +..+.+.++.+++.++.++|..|..|++.+.|.+...+++. .||
T Consensus 585 k~~~~~~~~~d~iM~lflri~~s~~-s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~----------~e~ 653 (859)
T KOG1241|consen 585 KVGSDIREVSDQIMGLFLRIFESKR-SAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNF----------QEY 653 (859)
T ss_pred HccccchhHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcc----------hHH
Confidence 9999999999999999999999842 56688899999999999999999999999999999999775 124
Q ss_pred HHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHH
Q 039062 759 TNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLT 838 (871)
Q Consensus 759 ~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~ 838 (871)
.+|.+..+++.++++. ....|.||.+.+++.+.++++++..+++++..++++||||+..+|.+|.||+..
T Consensus 654 ------qVc~~aVglVgdl~ra-L~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~--- 723 (859)
T KOG1241|consen 654 ------QVCAAAVGLVGDLARA-LEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEM--- 723 (859)
T ss_pred ------HHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHH---
Confidence 4566666666666665 567799999999999999999989999999999999999999999999999997
Q ss_pred HHHHHHHHH
Q 039062 839 SKDFLNECL 847 (871)
Q Consensus 839 v~~~l~~~~ 847 (871)
|.++|..++
T Consensus 724 vm~llq~as 732 (859)
T KOG1241|consen 724 VMPLLQQAS 732 (859)
T ss_pred HHHHHHHHH
Confidence 889999988
No 9
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-30 Score=269.68 Aligned_cols=686 Identities=14% Similarity=0.192 Sum_probs=472.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhcc
Q 039062 4 EVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWL 83 (871)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~ 83 (871)
.+.+.|.+.++||+++|+.||+.|+++..+ ++|...+++++.+.+.+.++|..|++.+||.++++|.+..+ .-.
T Consensus 6 ~l~~~l~qTl~pdps~rk~aEr~L~~~e~q--~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~----~~~ 79 (960)
T KOG1992|consen 6 TLANYLLQTLSPDPSVRKPAERALRSLEGQ--QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAED----SPI 79 (960)
T ss_pred HHHHHHHhcCCCCCccCchHHHHHHHhccC--CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCC----Ccc
Confidence 788999999999999999999999999998 99999999999998889999999999999999999986542 234
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccC
Q 039062 84 SLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVS 163 (871)
Q Consensus 84 ~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~ 163 (871)
.+..+.++.+|..++.++-+....++.+..++++.|++.++| +.||.|++.|...++++|-.+-.+.+.+-..+++.+.
T Consensus 80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP-~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R 158 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFP-DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYR 158 (960)
T ss_pred ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcC
Confidence 688999999999999999999899999999999999999999 7999999999999999998888888888888888874
Q ss_pred CCccchh-------hHH-------HHHHHHHhhhcCCCCCHH-------HHHHHHHHHHHhhhc-chhcccChhhHHHHH
Q 039062 164 PDVVEQD-------HVN-------KILTAVVQGMNASEMNND-------VRLAATRALYNALSF-AQANFSNDMERDYIM 221 (871)
Q Consensus 164 ~~~~~~~-------~~~-------~i~~~l~~~l~~~~~~~~-------vr~~al~~l~~~~~~-~~~~~~~~~~~~~i~ 221 (871)
++.=+.. .++ .++..-.......+.+.. +....++.+.++..- .+..| ++..+..|
T Consensus 159 ~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFF--Ednm~~wM 236 (960)
T KOG1992|consen 159 PEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFF--EDNMKTWM 236 (960)
T ss_pred cccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHH--HhhHHHHH
Confidence 3321111 111 222222222221122222 111111122221100 01112 22335566
Q ss_pred HHHHHhhc-------cCc------HHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCC-----hhHHHHHHHH
Q 039062 222 RVVCEATQ-------SAE------LKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDE-----EPVALQAIEF 283 (871)
Q Consensus 222 ~~l~~~l~-------~~~------~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~a~~~ 283 (871)
......++ +++ .++|...|+.+.-.+.+|.+.+.+++++++..+|..+.+.. +.....|+.|
T Consensus 237 ~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~F 316 (960)
T KOG1992|consen 237 GAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQF 316 (960)
T ss_pred HHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 66666554 111 36788999999999999999999999999999999886532 3466678999
Q ss_pred HHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHH-HHHHHhcccCCcc--------------cccccccHhHH
Q 039062 284 WSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPL-LLEILLKQEEDQD--------------QEEGAWNIAMA 348 (871)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~~~~d~~--------------~~~~~~~~r~~ 348 (871)
+..+++.. .|.+.+++ ...+..+... ++..+.-+++|.+ +.-+..+-|++
T Consensus 317 Lt~V~~r~-----~y~~~F~~----------~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~ 381 (960)
T KOG1992|consen 317 LTSVSRRP-----HYAELFEG----------ENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRA 381 (960)
T ss_pred HHHHHhhh-----hhHhhhcc----------hHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHH
Confidence 99988742 11100110 1111122211 1112221222211 11123366889
Q ss_pred HHHHHHHHHHHcCCCcccchHHHHHhhhc------CCChhhHHHHHHHHHHhhcCCC--h------hhh---hHHH-HHH
Q 039062 349 GGTCLGLVARTVGDDIVPLVIPFIEENIA------KPDWRQREAATYAFGSILEGPS--P------DKL---LHIV-NVA 410 (871)
Q Consensus 349 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~~a~~~l~~l~~~~~--~------~~~---~~~l-~~i 410 (871)
|.+.++.++..+...+.+.+...+...++ +.+|+.++.+++.+.+++.... . ..+ ..++ ..+
T Consensus 382 a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~i 461 (960)
T KOG1992|consen 382 AIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQI 461 (960)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHh
Confidence 99999999999977777777776666665 5789999999999999975421 0 011 1222 344
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcc
Q 039062 411 LSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYE 489 (871)
Q Consensus 411 ~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~ 489 (871)
+|.+.+.= ..++|.++..+++-+..+-. ...+.++-..+|.++..++. ...|.+.|+.++..+....+
T Consensus 462 lp~L~s~~-vn~~pilka~aIKy~~~FR~----------ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre 530 (960)
T KOG1992|consen 462 LPDLLSPN-VNEFPILKADAIKYIYTFRN----------QLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRE 530 (960)
T ss_pred hHHhccCc-cccccchhhcccceeeeecc----------cCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhcccccc
Confidence 45444333 35678888888755332222 23467888899999999986 66778889998887765443
Q ss_pred c----CCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCC
Q 039062 490 D----VGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKL 565 (871)
Q Consensus 490 ~----~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~ 565 (871)
. -.....+.||+..++..+.+.++.++. .=-+....|+..++...+....|+.+.++..+.+.......
T Consensus 531 ~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~---~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~K---- 603 (960)
T KOG1992|consen 531 NSNAKIFGAEDIAPFVEILLTNLFKALSLPGK---AENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSK---- 603 (960)
T ss_pred CccccccchhhcchHHHHHHHHHHHhccCCcc---cccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhc----
Confidence 3 134678899999999999988876642 12257888999999998888888888888888888766432
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhh
Q 039062 566 SSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKY 645 (871)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 645 (871)
.+.++ ..-....+.++.+++..+..+ +.....+...++|.+..+|...-.+...+++..++.++...+..+.+.
T Consensus 604 NPs~P----~fnHYLFEsi~~li~~t~~~~--~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~ 677 (960)
T KOG1992|consen 604 NPSNP----QFNHYLFESIGLLIRKTCKAN--PSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDS 677 (960)
T ss_pred CCCCc----hhHHHHHHHHHHHHHHHhccC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Confidence 12223 223446677777777666542 223566777888888888887655677789999999998887755555
Q ss_pred hHhHHHHHHhhhcCCcchhHH---HHHHHHHHHHHHHhhhccc--ccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHH
Q 039062 646 MPDFYKYLEMGLQNFEEYQVC---AVTVGVVGDICRALEEKIL--PYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIA 720 (871)
Q Consensus 646 l~~i~~~l~~~l~~~~~~~v~---~~a~~~l~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~ 720 (871)
+..++|.++. +.-|+.+ -+.+.++..+.+.....+. ..++.++..+-+.+.+. ..-..++..+.+|.
T Consensus 678 ~~~l~~~lLs----p~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSk----a~Dh~GF~LLn~i~ 749 (960)
T KOG1992|consen 678 YSPLFPPLLS----PNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASK----ANDHHGFYLLNTII 749 (960)
T ss_pred HHHHHHHhcC----HHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCc----ccchhHHHHHHHHH
Confidence 5555554432 2223222 2456667777766554444 44677777777776654 23367899999999
Q ss_pred HhhccC-hHHhHHHHHHHHHHHHhhc
Q 039062 721 LAIGEN-FEKYLMYAMPMLQSAADLS 745 (871)
Q Consensus 721 ~~~~~~-~~~~~~~i~~~l~~~l~~~ 745 (871)
.+++.. ..||+.+++-.+.+.++++
T Consensus 750 ~~~~~~~~~py~k~i~~llf~Rlqns 775 (960)
T KOG1992|consen 750 ESIPPNELAPYMKQIFGLLFQRLQNS 775 (960)
T ss_pred hcCCHhhhhHHHHHHHHHHHHHHhcc
Confidence 988754 7899999999999999886
No 10
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=100.00 E-value=2.9e-29 Score=262.56 Aligned_cols=676 Identities=17% Similarity=0.213 Sum_probs=462.4
Q ss_pred ccHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhh
Q 039062 2 AMEVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQR 81 (871)
Q Consensus 2 ~~~l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~ 81 (871)
+|.+..+|.+++|+|+.+|.+||..|+++... ++|...|..++.++.-+.+.||.|++.||+++.++|++..+.+...
T Consensus 3 ~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~--~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~ 80 (1005)
T KOG2274|consen 3 KQAIIELLSGSLSADQNVRSQAETQLKQLELT--EGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYP 80 (1005)
T ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhccccc--hHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCC
Confidence 46799999999999999999999999999987 8999999999999878999999999999999999999887665332
Q ss_pred ccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhc
Q 039062 82 WLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEE 161 (871)
Q Consensus 82 ~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~ 161 (871)
..-+.+.|..||..+++++.+++..+|+.++.+++.|+..+|| +.||++++.+..++++++.+..++|++++..+..+
T Consensus 81 -~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~P-d~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~e 158 (1005)
T KOG2274|consen 81 -LIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYP-DEWPELVPFILKLLSSGNENSIHGAMRVLAELSDE 158 (1005)
T ss_pred -CcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCc-hhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHH
Confidence 2367789999999999999999999999999999999999999 79999999999999999999999999999988776
Q ss_pred cCCCcc---chhhHHHHHHHHHhhhcCCCCCHHHHH--HHHHHHHHhhhcchhcccC-hhhH--------HHHHHHHHHh
Q 039062 162 VSPDVV---EQDHVNKILTAVVQGMNASEMNNDVRL--AATRALYNALSFAQANFSN-DMER--------DYIMRVVCEA 227 (871)
Q Consensus 162 ~~~~~~---~~~~~~~i~~~l~~~l~~~~~~~~vr~--~al~~l~~~~~~~~~~~~~-~~~~--------~~i~~~l~~~ 227 (871)
...+.. +....+.+. .++.... ..+...|. +.++.+..+.......-.. .+.. +.+++.+...
T Consensus 159 v~~ee~~~~~~~~l~~m~-~~f~~~~--~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~ 235 (1005)
T KOG2274|consen 159 VDVEEMFFVGPVSLAEMY-RIFALTI--VYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHP 235 (1005)
T ss_pred HHHHHHhcccccchhhhh-hhhhhcc--ccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 511111 011122222 2233333 23333343 3346666665433221111 0111 2233333333
Q ss_pred hc---cCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhC----------------------CCh------hH
Q 039062 228 TQ---SAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVRE----------------------DEE------PV 276 (871)
Q Consensus 228 l~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~----------------------~~~------~~ 276 (871)
++ ..+...|...+++++.+.+.+|..+.+++..++...|..+.. .++ ..
T Consensus 236 l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l 315 (1005)
T KOG2274|consen 236 LQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETL 315 (1005)
T ss_pred hcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHh
Confidence 32 234578899999999999999999999988887777765421 011 13
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcc-------cCCc----ccccccccH
Q 039062 277 ALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQ-------EEDQ----DQEEGAWNI 345 (871)
Q Consensus 277 ~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~d~----~~~~~~~~~ 345 (871)
....++|+..++.... ..+-+...++.+++.+.-.++-. ..|. .++++.+..
T Consensus 316 ~i~i~eF~s~i~t~~~-----------------~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~ 378 (1005)
T KOG2274|consen 316 VIQIVEFLSTIVTNRF-----------------LSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTA 378 (1005)
T ss_pred hhhHHHHHHHHHHHHH-----------------HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchh
Confidence 3455667766666421 01112223344444433322211 1111 112222678
Q ss_pred hHHHHHHHHHHHHHcCCCcccchHHHHHhh---------hcC-CChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHH
Q 039062 346 AMAGGTCLGLVARTVGDDIVPLVIPFIEEN---------IAK-PDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFML 415 (871)
Q Consensus 346 r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~---------l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~ 415 (871)
|.++...+..+...+|..-...+.+..... ++. ..|+..++.+.+......+. ..-..+..++..+.
T Consensus 379 ~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~---~~dd~l~~l~~~~~ 455 (1005)
T KOG2274|consen 379 RISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDD---ANDDKLIELTIMID 455 (1005)
T ss_pred hhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCc---chHHHHHHHHHHHH
Confidence 888888888888888765444443332221 222 34777888777777766432 22233444555555
Q ss_pred HHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhcc-C-ChHHHHHHHHHHHHHHhhcccCCC
Q 039062 416 SALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMK-D-TPNVAEKACGALYFLAQGYEDVGP 493 (871)
Q Consensus 416 ~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d-~~~v~~~a~~~l~~l~~~~~~~~~ 493 (871)
..+.....|..-..++|+++.+++... ..+..+..++...+..+. + .+-++.+|+.++..++ .
T Consensus 456 ~~l~~~e~P~Ll~Ra~~~i~~fs~~~~--------~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~-------~ 520 (1005)
T KOG2274|consen 456 NGLVYQESPFLLLRAFLTISKFSSSTV--------INPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC-------K 520 (1005)
T ss_pred hhcccccCHHHHHHHHHHHHHHHhhhc--------cchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc-------C
Confidence 555245677777799999998888753 346677788888888776 3 5677888888776664 2
Q ss_pred CCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHH
Q 039062 494 SSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQ 573 (871)
Q Consensus 494 ~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~ 573 (871)
...+.++.+.++..+.....+.. ..+-....++|+..++.-++.....-..+.|.++..+..+ .+|+.
T Consensus 521 ~~vl~~~~p~ild~L~qlas~~s---~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~-------s~DP~-- 588 (1005)
T KOG2274|consen 521 VKVLLSLQPMILDGLLQLASKSS---DEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKY-------SEDPQ-- 588 (1005)
T ss_pred ceeccccchHHHHHHHHHccccc---HHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHh-------cCCch--
Confidence 78899999999999999988764 3567788999999998877655555577888888888776 34553
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccC----cchhhhHHHHHHHHHHHhhhhhhh-hhHh
Q 039062 574 GELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRS----ATVHEEAMLAIGALAYAAGLDFAK-YMPD 648 (871)
Q Consensus 574 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~----~~~~~~a~~~l~~l~~~~~~~~~~-~l~~ 648 (871)
+...+-.++..++..... ..|+...++|.+++.++.+. ..+..-++..|..+++..++.+.. .+..
T Consensus 589 --V~~~~qd~f~el~q~~~~-------~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~ 659 (1005)
T KOG2274|consen 589 --VASLAQDLFEELLQIAAN-------YGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY 659 (1005)
T ss_pred --HHHHHHHHHHHHHHHHHh-------hcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 333444555555553222 55788899999999999875 556777888999999988876644 4567
Q ss_pred HHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhccccc-------HHHHHHHHHHHccCCCCCCcCCchHHHHHHH---
Q 039062 649 FYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPY-------CDGIMTQLLKDLSSNQLHRSVKPPIFSCFGD--- 718 (871)
Q Consensus 649 i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~-------~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~--- 718 (871)
.+|.+.++.-..++....+.+-+|+..+.....+++..| +..+|..+-++|+-. ....++...|.
T Consensus 660 ~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~-----~sds~a~~VG~lV~ 734 (1005)
T KOG2274|consen 660 AFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPE-----TSDSAAAFVGPLVL 734 (1005)
T ss_pred HhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCc-----cchhHHHHHhHHHH
Confidence 888888887666677888999999998877644333222 236666666655432 33444445555
Q ss_pred -HHHhhccChHHhHHHHHHHHHHHHhhc
Q 039062 719 -IALAIGENFEKYLMYAMPMLQSAADLS 745 (871)
Q Consensus 719 -i~~~~~~~~~~~~~~i~~~l~~~l~~~ 745 (871)
++.+.|..+.|.+++++..+...++..
T Consensus 735 tLit~a~~el~~n~d~IL~Avisrmq~a 762 (1005)
T KOG2274|consen 735 TLITHASSELGPNLDQILRAVISRLQQA 762 (1005)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHh
Confidence 455667778888888888888777663
No 11
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=5.4e-27 Score=245.72 Aligned_cols=752 Identities=14% Similarity=0.165 Sum_probs=502.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH-HHHhh-------ChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHH
Q 039062 7 QVLLNAQSIDGTVRKHAEESLK-QFQEQ-------NLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFEL 78 (871)
Q Consensus 7 ~~l~~~~s~~~~~r~~A~~~L~-~~~~~-------~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~ 78 (871)
++++.+.|+|.+.|-+|...|. ++++. -.+..+..+++.+.+. +.+++.+|...+.-..+
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~--ngEVQnlAVKClg~lvs---------- 76 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDK--NGEVQNLAVKCLGPLVS---------- 76 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHh----------
Confidence 7899999999999999999994 66653 2356677788888864 67888888877765443
Q ss_pred hhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCC-------CCchHHHHHHHHhhcC--CChHHHH
Q 039062 79 VQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQ-------KQWPELIVSLLSNVHQ--LPAHVKQ 149 (871)
Q Consensus 79 ~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~-------~~~~~ll~~L~~~l~~--~~~~~r~ 149 (871)
++.++..+.+.+.|...+-+.....|-..+-.+-......-|. .-.+.+.+.+.+.+.. +...++-
T Consensus 77 -----Kvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~ 151 (1233)
T KOG1824|consen 77 -----KVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKC 151 (1233)
T ss_pred -----hchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHH
Confidence 4567777888888888877776677766665555554443331 2335555666655543 2334777
Q ss_pred HHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhc
Q 039062 150 ATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQ 229 (871)
Q Consensus 150 ~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~ 229 (871)
.++..+......+ ++.+ .+.-..++..++..+. .+...||+.|+.+++++..+.+.. ...++++.+...+.
T Consensus 152 e~lDil~d~lsr~-g~ll-~~fh~~il~~l~~ql~--s~R~aVrKkai~~l~~la~~~~~~-----ly~~li~~Ll~~L~ 222 (1233)
T KOG1824|consen 152 EVLDILADVLSRF-GTLL-PNFHLSILKCLLPQLQ--SPRLAVRKKAITALGHLASSCNRD-----LYVELIEHLLKGLS 222 (1233)
T ss_pred HHHHHHHHHHHhh-cccC-cchHHHHHHHHhhccc--ChHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHhccC
Confidence 7888888777777 6666 4455666666666666 678899999999999998765532 22556666655553
Q ss_pred -cCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHh---hCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 039062 230 -SAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAV---REDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGN 305 (871)
Q Consensus 230 -~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~ 305 (871)
......-...++|++.++...+..+..|++.+++++.... +.++++.|..++..+..+...
T Consensus 223 ~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r--------------- 287 (1233)
T KOG1824|consen 223 NRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR--------------- 287 (1233)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh---------------
Confidence 3455566778899999999999999999998888888777 567778888888887776653
Q ss_pred CCCchhhhHHhhhhhhHHHHHHHHhccc-------CCc------------------ccccccccHhHHHHHHHHHHHHHc
Q 039062 306 SDIPCFYFIKQALPALVPLLLEILLKQE-------EDQ------------------DQEEGAWNIAMAGGTCLGLVARTV 360 (871)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~-------~d~------------------~~~~~~~~~r~~a~~~l~~l~~~~ 360 (871)
|+.-+.++.|.++..+++.+++++ ||+ ||||.+|.+|++|++|+..+....
T Consensus 288 ----cp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR 363 (1233)
T KOG1824|consen 288 ----CPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR 363 (1233)
T ss_pred ----ChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhcc
Confidence 445567788888999998887642 110 133457999999999997765432
Q ss_pred CC-------Ccccc---------------hH-------------------------------------------HHHHhh
Q 039062 361 GD-------DIVPL---------------VI-------------------------------------------PFIEEN 375 (871)
Q Consensus 361 ~~-------~~~~~---------------l~-------------------------------------------~~l~~~ 375 (871)
.+ ..-|. ++ ..+...
T Consensus 364 ~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~q 443 (1233)
T KOG1824|consen 364 LEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQ 443 (1233)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHH
Confidence 11 00011 11 111111
Q ss_pred hcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcH--HHHHHHHHHHHHHhhhhccCCCCCCccch
Q 039062 376 IAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNN--HVKDTTAWTLGRIFEFLHGSTIGTPIITQ 453 (871)
Q Consensus 376 l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~--~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 453 (871)
+.+.+.+.|..++..+..+.... ++.+.++++.++|.+...+ +|.+. ..+..++..+.......+. ....
T Consensus 444 lr~ks~kt~~~cf~lL~eli~~l-p~~l~~~~~slvpgI~~~l-~DkSsss~~ki~~L~fl~~~L~s~~p------~~fh 515 (1233)
T KOG1824|consen 444 LREKSVKTRQGCFLLLTELINVL-PGALAQHIPSLVPGIIYSL-NDKSSSSNLKIDALVFLYSALISHPP------EVFH 515 (1233)
T ss_pred HhhccccchhhHHHHHHHHHHhC-cchhhhcccccchhhhhhc-CCccchHHHHHHHHHHHHHHHhcCCh------hhcc
Confidence 11112233455555566666554 5677888889999999999 87654 4455555554444333321 2334
Q ss_pred hhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCC--CCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHH
Q 039062 454 ANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGP--SSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETL 530 (871)
Q Consensus 454 ~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~--~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l 530 (871)
.+++.+.|.+.....+ -+++...|......+++.+.+..+ .-...||+.+++...++.+...+. |..||+.|+.|+
T Consensus 516 p~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~-DqeVkeraIscm 594 (1233)
T KOG1824|consen 516 PHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDS-DQEVKERAISCM 594 (1233)
T ss_pred cchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccc-cHHHHHHHHHHH
Confidence 5677777777777777 578888887777778876654321 245678999999999999887776 889999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHH
Q 039062 531 NEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMG 610 (871)
Q Consensus 531 ~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~ 610 (871)
|.++..+++.....++..++.+++.+.+.. .+..+..++..|+..--.-+ ..+....+++
T Consensus 595 gq~i~~fgD~l~~eL~~~L~il~eRl~nEi---------------TRl~AvkAlt~Ia~S~l~i~-----l~~~l~~il~ 654 (1233)
T KOG1824|consen 595 GQIIANFGDFLGNELPRTLPILLERLGNEI---------------TRLTAVKALTLIAMSPLDID-----LSPVLTEILP 654 (1233)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHhchh---------------HHHHHHHHHHHHHhccceee-----hhhhHHHHHH
Confidence 999999998888888999999999886532 23346677776665422211 5677888999
Q ss_pred HHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh-HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHH
Q 039062 611 LFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM-PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCD 689 (871)
Q Consensus 611 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 689 (871)
.+...+......+|...+.++..++++.+..+.++. ..++..+...+. ..+..+.+.|+.++..+....+..+....+
T Consensus 655 ~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lis-esdlhvt~~a~~~L~tl~~~~ps~l~~~~~ 733 (1233)
T KOG1824|consen 655 ELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLIS-ESDLHVTQLAVAFLTTLAIIQPSSLLKISN 733 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHHHhcccHHHHHHhh
Confidence 999988888778899999999999999988776654 445555554443 446688889999999888877655555567
Q ss_pred HHHHHHHHHccCCCCCCcCCchHHHHHHH----HHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHH
Q 039062 690 GIMTQLLKDLSSNQLHRSVKPPIFSCFGD----IALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNG 765 (871)
Q Consensus 690 ~i~~~l~~~l~~~~~~~~v~~~~~~~l~~----i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~ 765 (871)
.+++.++..++++- +.-.+++++-. +...-.+.+. |.. +...+........ ...+...
T Consensus 734 ~iL~~ii~ll~Spl----lqg~al~~~l~~f~alV~t~~~~l~-y~~-----l~s~lt~PV~~~~--------~~~l~kq 795 (1233)
T KOG1824|consen 734 PILDEIIRLLRSPL----LQGGALSALLLFFQALVITKEPDLD-YIS-----LLSLLTAPVYEQV--------TDGLHKQ 795 (1233)
T ss_pred hhHHHHHHHhhCcc----ccchHHHHHHHHHHHHHhcCCCCcc-HHH-----HHHHHcCCccccc--------ccchhHH
Confidence 88888888888764 33344443333 2222222322 222 2222222100000 0112222
Q ss_pred HH----HHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHH
Q 039062 766 IL----EAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKD 841 (871)
Q Consensus 766 ~~----~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~ 841 (871)
+. .|...+.....+. -..+...+..-+..+.++..+|..|+-.+|++++..+..-.+.++ .
T Consensus 796 a~~siA~cvA~Lt~~~~~~---------s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~------~ 860 (1233)
T KOG1824|consen 796 AYYSIAKCVAALTCACPQK---------SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELK------D 860 (1233)
T ss_pred HHHHHHHHHHHHHHhcccc---------chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhH------H
Confidence 33 3333333332211 113444444444445678889999999999999988765554444 4
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHHH
Q 039062 842 FLNECLSSKDHMIKESAEWARLAIN 866 (871)
Q Consensus 842 ~l~~~~~~~~~~~~~~~~~~~~~~~ 866 (871)
.+-++.++...+++.+|+||+|.+.
T Consensus 861 ~iieaf~sp~edvksAAs~ALGsl~ 885 (1233)
T KOG1824|consen 861 TIIEAFNSPSEDVKSAASYALGSLA 885 (1233)
T ss_pred HHHHHcCCChHHHHHHHHHHhhhhh
Confidence 5666667899999999999999874
No 12
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=7.9e-28 Score=247.87 Aligned_cols=643 Identities=16% Similarity=0.191 Sum_probs=398.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccC
Q 039062 5 VTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (871)
Q Consensus 5 l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~ 84 (871)
++|.|+++.|||..+++.||++|++++++ |||+..|..|+.+.+.+.++|.+|++.|||.++++|+.. ..| .
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtq--PGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~-----~~~-s 73 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQ--PGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRN-----TKM-S 73 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccC--CcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcC-----Ccc-c
Confidence 67999999999999999999999999999 999999999999999999999999999999999999843 344 6
Q ss_pred CCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCC----ChHHHHHHHHHHHHHhh
Q 039062 85 LDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQL----PAHVKQATLETLGYLCE 160 (871)
Q Consensus 85 ~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~----~~~~r~~al~~l~~l~~ 160 (871)
+++|.|..||..++....++++.+..+.|.++++||+.++| ..||++++.|.+.+++. |....+..+..+.++.+
T Consensus 74 l~~EEK~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyP-reWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK 152 (978)
T KOG1993|consen 74 LPPEEKDFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYP-REWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILK 152 (978)
T ss_pred CCHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCC-ccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 79999999999999876 77778889999988887
Q ss_pred ccCCCccc------hhhHHHHHHHHHhhhcCC------------CC-----CHHHHHHHHHHHHHhhhcchhcccChhhH
Q 039062 161 EVSPDVVE------QDHVNKILTAVVQGMNAS------------EM-----NNDVRLAATRALYNALSFAQANFSNDMER 217 (871)
Q Consensus 161 ~~~~~~~~------~~~~~~i~~~l~~~l~~~------------~~-----~~~vr~~al~~l~~~~~~~~~~~~~~~~~ 217 (871)
.+....+. .+..+.+++.+...+-++ +. ..+.-..+++++..++-+.-.....
T Consensus 153 ~Lat~RL~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~k---- 228 (978)
T KOG1993|consen 153 ALATKRLLADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSK---- 228 (978)
T ss_pred HHHHhHHhhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcch----
Confidence 76433331 222333333222222111 11 2223344566666655432111111
Q ss_pred HHHHHHHHHhh-----------c----cCcHHHHHHHHH----HHHHHHHHhHHhhHH--hHHHHHHHHHHHhhCC----
Q 039062 218 DYIMRVVCEAT-----------Q----SAELKIRQAAFE----CLVSISSTYYEKLAP--YMQDIYSITAKAVRED---- 272 (871)
Q Consensus 218 ~~i~~~l~~~l-----------~----~~~~~~~~~a~~----~l~~l~~~~~~~~~~--~~~~l~~~~~~~~~~~---- 272 (871)
..+.+.+.+++ . ..-.++....+. .+..+.+.+|-.|.. ..+..+++.+..+.++
T Consensus 229 se~~eRl~~F~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l 308 (978)
T KOG1993|consen 229 SEFFERLLQFLELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFL 308 (978)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchh
Confidence 11222222211 1 111122223333 333344444444444 3344455555555433
Q ss_pred ---------ChhHHHHHHHHHHHHHHHHHhhhhhhcCC--CCCCC---CCc------hhhhHHhhhhhhHHHHHHHH---
Q 039062 273 ---------EEPVALQAIEFWSSICDEEIDILEEYGSD--FTGNS---DIP------CFYFIKQALPALVPLLLEIL--- 329 (871)
Q Consensus 273 ---------~~~~~~~a~~~~~~l~~~~~~~~~~~~~~--~~~~~---~~~------~~~~~~~~~~~l~~~l~~~l--- 329 (871)
-++...+|+..+..+.... ..++... ...++ ... ...+..+-+..+...++...
T Consensus 309 ~~~~~~~~~fe~f~iq~l~mlK~vm~~~---~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflL 385 (978)
T KOG1993|consen 309 GQISGHLSSFEEFFIQCLNMLKKVMIMK---NYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLL 385 (978)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHhh---cccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc
Confidence 1234445555444332211 0011000 00011 010 01111222333444443321
Q ss_pred h-----cccCCcc-----cccccc--cHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCC---------hhhHHHHH
Q 039062 330 L-----KQEEDQD-----QEEGAW--NIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPD---------WRQREAAT 388 (871)
Q Consensus 330 ~-----~~~~d~~-----~~~~~~--~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~---------~~~r~~a~ 388 (871)
+ ...+|++ ++..+| ++|.+|......+...+++-+.|.++.++....+... --.+.|.+
T Consensus 386 t~~eLEeW~~dPE~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiY 465 (978)
T KOG1993|consen 386 TEEELEEWTQDPEGWVLEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIY 465 (978)
T ss_pred CHHHHHHHhcChHHhhhhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHH
Confidence 1 1112332 112235 7899999999999999999999999999865443321 12344544
Q ss_pred HHHHHhhcCCC-hhhhhHHH-HHHHHHHHHHccCCCcH-HHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHH
Q 039062 389 YAFGSILEGPS-PDKLLHIV-NVALSFMLSALTKDPNN-HVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQ 465 (871)
Q Consensus 389 ~~l~~l~~~~~-~~~~~~~l-~~i~~~l~~~l~~d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 465 (871)
.++|.-+.... .-.+...+ ..++|.+. . ..++. .+|...+|.+|...+.- ...+..+.+..+++.
T Consensus 466 aa~g~~a~~l~~~~dF~~Wl~~~llpEl~--~-~~~~~RiiRRRVa~ilg~Wvsvq---------~~~e~k~l~Y~a~ln 533 (978)
T KOG1993|consen 466 AAFGLAAYELSNILDFDKWLQEALLPELA--N-DHGNSRIIRRRVAWILGQWVSVQ---------QKLELKPLLYCAFLN 533 (978)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHhhCHHhh--h-cccchhHHHHHHHHHHhhhhhee---------chHhHHHHHHHHHHH
Confidence 45554443321 01122222 22333332 2 33444 45899999999887743 234556678888888
Q ss_pred hccCC--hHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHH
Q 039062 466 SMKDT--PNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAP 543 (871)
Q Consensus 466 ~l~d~--~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 543 (871)
.+.|+ ..|+-+++.++...++...- ..+.+.||++.+...+.+.+..-. ..+.|...+..++.++...++...|
T Consensus 534 LL~d~~D~vV~Ltt~~tlkl~vDD~nF--~~dsFlp~lenlf~~lfkll~~~~--e~Dtk~~VL~~ls~lI~r~~e~I~P 609 (978)
T KOG1993|consen 534 LLQDQNDLVVRLTTARTLKLVVDDWNF--SEDSFLPYLENLFVLLFKLLKAVE--ECDTKTSVLNLLSTLIERVSEHIAP 609 (978)
T ss_pred hcCccccceeehHHHHHHHHhhhhccC--ChhhhhhhHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 88874 45688889999888876543 378899999999888888876544 4466889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHccc----
Q 039062 544 MVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACR---- 619 (871)
Q Consensus 544 ~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~---- 619 (871)
+...++..+-..|+... + .+-++..++.++..++.++|... ..+.+++- + +++.-.+.
T Consensus 610 ~~~~ivq~lp~LWe~s~-------~----e~lLr~alL~~L~~lV~alg~qS---~~~~~fL~---p-VIel~~D~~sP~ 671 (978)
T KOG1993|consen 610 YASTIVQYLPLLWEESE-------E----EPLLRCALLATLRNLVNALGAQS---FEFYPFLY---P-VIELSTDPSSPE 671 (978)
T ss_pred HHHHHHHHHHHHHhhhc-------c----CcHHHHHHHHHHHHHHHHhccCC---ccchHHHH---H-HHHHhcCCCCCc
Confidence 99999999999997641 1 23478889999999999999762 11223322 2 22222222
Q ss_pred CcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh-hcccccHHHHHHHHHHH
Q 039062 620 SATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE-EKILPYCDGIMTQLLKD 698 (871)
Q Consensus 620 ~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~ 698 (871)
.-.+-+.++..|+...... +.+.|-+-.++|.+...+.... +....++..+....--.+ .-+..|...+...+.+.
T Consensus 672 hv~L~EDgmeLW~~~L~n~-~~l~p~ll~L~p~l~~~iE~st--e~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~ 748 (978)
T KOG1993|consen 672 HVYLLEDGMELWLTTLMNS-QKLTPELLLLFPHLLYIIEQST--ENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDL 748 (978)
T ss_pred eeehhhhHHHHHHHHHhcc-cccCHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 2236788999999988766 3455555556666665554221 223334444433222111 23445556666666665
Q ss_pred cc
Q 039062 699 LS 700 (871)
Q Consensus 699 l~ 700 (871)
+.
T Consensus 749 l~ 750 (978)
T KOG1993|consen 749 LD 750 (978)
T ss_pred HH
Confidence 54
No 13
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.97 E-value=4.3e-25 Score=231.64 Aligned_cols=610 Identities=16% Similarity=0.187 Sum_probs=428.4
Q ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCC--CCChhHHHHHHHHHHcccccchhhhHHH----
Q 039062 5 VTQVLL-NAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELAND--DKPVDSRKLAGLILKNALDAKEQHRKFE---- 77 (871)
Q Consensus 5 l~~~l~-~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~--~~~~~~r~~a~~~lk~~i~~~~~~~~~~---- 77 (871)
++.++- .+.+.|+++++.|.++|.-+.+.-+..-+..+.+-++++ +.-.+.|..+++.||..+..-.+.....
T Consensus 48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~t 127 (1233)
T KOG1824|consen 48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAAT 127 (1233)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccH
Confidence 344444 455689999999999997555443344444444444432 3357888888888888764322100000
Q ss_pred --------------------------------HhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcC
Q 039062 78 --------------------------------LVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELP 125 (871)
Q Consensus 78 --------------------------------~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~ 125 (871)
....+..+=++....+...++..+..+...||+.+..+++.++... +
T Consensus 128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-~ 206 (1233)
T KOG1824|consen 128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-N 206 (1233)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-C
Confidence 0011111222233444455555566677899999999999999876 5
Q ss_pred CCCchHHHHHHHHhhcCC-ChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHh
Q 039062 126 QKQWPELIVSLLSNVHQL-PAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNA-SEMNNDVRLAATRALYNA 203 (871)
Q Consensus 126 ~~~~~~ll~~L~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~vr~~al~~l~~~ 203 (871)
..-+.+++..|...+..+ +.......+.+++.++... +..+ ..|.+.+++.+.+.++. +..+.++|...++++..+
T Consensus 207 ~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~a-g~r~-~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~f 284 (1233)
T KOG1824|consen 207 RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQA-GHRF-GSHLDKIVPLVADYCNKIEEDDDELREYCLQALESF 284 (1233)
T ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHh-cchh-hcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 467888999998888765 4556678899999999987 7777 68899999999988843 156789999999999999
Q ss_pred hhcchhcccChhhHHHHHHHHHHhhc----------------------------------cCcHHHHHHHHHHHHHHHHH
Q 039062 204 LSFAQANFSNDMERDYIMRVVCEATQ----------------------------------SAELKIRQAAFECLVSISST 249 (871)
Q Consensus 204 ~~~~~~~~~~~~~~~~i~~~l~~~l~----------------------------------~~~~~~~~~a~~~l~~l~~~ 249 (871)
+.+.+..... +++.+++.+.+.+. +-.|.+|++|.+|+..++..
T Consensus 285 l~rcp~ei~p--~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS 362 (1233)
T KOG1824|consen 285 LRRCPKEILP--HVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS 362 (1233)
T ss_pred HHhChhhhcc--cchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc
Confidence 8876654321 34566666655431 11268999999999999999
Q ss_pred hHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhc---CCCCCCCCCchhhhHHhhhhhhHHHHH
Q 039062 250 YYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYG---SDFTGNSDIPCFYFIKQALPALVPLLL 326 (871)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~ 326 (871)
..+.+..+...+-+.++..+++.++.++...++....+........+.+. ...+++++. ...++..-.+.++..+-
T Consensus 363 R~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s-~~~~L~~~~~~iVkai~ 441 (1233)
T KOG1824|consen 363 RLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPS-DLSMLSDQVPLIVKAIQ 441 (1233)
T ss_pred cHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCcc-chHHHHhhhHHHHHHHH
Confidence 99999888888888888899998889998888887777665332222221 001122211 12455555666666666
Q ss_pred HHHhcccCCcccccccccHhHHHHHHHHHHHHHcCC---CcccchHHHHHhhhcCC--ChhhHHHHHHHHHHhhcCCChh
Q 039062 327 EILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGD---DIVPLVIPFIEENIAKP--DWRQREAATYAFGSILEGPSPD 401 (871)
Q Consensus 327 ~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~~ 401 (871)
+.+.. + +..-|..+...|..+...+++ ..++.++|-+...++|. .-..+..++..+..+..+.+++
T Consensus 442 ~qlr~---k------s~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~ 512 (1233)
T KOG1824|consen 442 KQLRE---K------SVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPE 512 (1233)
T ss_pred HHHhh---c------cccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChh
Confidence 65541 1 123355566677777777754 34667788888777763 3456677777776666666689
Q ss_pred hhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhcc--C-ChHHHHHHH
Q 039062 402 KLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMK--D-TPNVAEKAC 478 (871)
Q Consensus 402 ~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~--d-~~~v~~~a~ 478 (871)
.+.++++.+.|.+.... .|+-+.+-+.|+.+.++++..+..-.++.......++..++...++.+. | +..|+++|+
T Consensus 513 ~fhp~~~~Ls~~v~~aV-~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraI 591 (1233)
T KOG1824|consen 513 VFHPHLSALSPPVVAAV-GDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAI 591 (1233)
T ss_pred hcccchhhhhhHHHHHh-cCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 99999999999999999 9999999999999999999887532222224456788888888888887 3 568999999
Q ss_pred HHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHH
Q 039062 479 GALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSST-DETAPMVLQLVPVIMMELH 557 (871)
Q Consensus 479 ~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~ll~~l~~~l~ 557 (871)
.|++.++.++ ++.+...++.+++.+++.+++. -.|..|+.|+..++...- -...+.+..+++.+...+.
T Consensus 592 scmgq~i~~f-----gD~l~~eL~~~L~il~eRl~nE-----iTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flr 661 (1233)
T KOG1824|consen 592 SCMGQIIANF-----GDFLGNELPRTLPILLERLGNE-----ITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLR 661 (1233)
T ss_pred HHHHHHHHHH-----hhhhhhhhHHHHHHHHHHHhch-----hHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHH
Confidence 9999998877 4678888999999999998854 468899999999887655 3567888889998888876
Q ss_pred HhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhh-HHHHHHHHHHHHcccCcchhhhHHHHHHHHHH
Q 039062 558 KTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQY-ADQIMGLFLRVFACRSATVHEEAMLAIGALAY 636 (871)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~ 636 (871)
+.. ..++...+.++..+++..+.. +..+ ++.++..+..++..++-.+.+.++..+..++.
T Consensus 662 K~~-------------r~lr~~~l~a~~~L~~~~~~~------~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~ 722 (1233)
T KOG1824|consen 662 KNQ-------------RALRLATLTALDKLVKNYSDS------IPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAI 722 (1233)
T ss_pred HHH-------------HHHHHHHHHHHHHHHHHHhcc------ccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 642 235666778888888888765 4443 45666666677776666777888888888877
Q ss_pred HhhhhhhhhhHhHHHHHHhhhcC
Q 039062 637 AAGLDFAKYMPDFYKYLEMGLQN 659 (871)
Q Consensus 637 ~~~~~~~~~l~~i~~~l~~~l~~ 659 (871)
..+.......+.+++.++..+++
T Consensus 723 ~~ps~l~~~~~~iL~~ii~ll~S 745 (1233)
T KOG1824|consen 723 IQPSSLLKISNPILDEIIRLLRS 745 (1233)
T ss_pred cccHHHHHHhhhhHHHHHHHhhC
Confidence 76665555556666666655543
No 14
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.8e-24 Score=220.11 Aligned_cols=696 Identities=13% Similarity=0.158 Sum_probs=445.4
Q ss_pred CccHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhh
Q 039062 1 MAMEVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQ 80 (871)
Q Consensus 1 ~~~~l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~ 80 (871)
|++++.|++...++.|+.+|..||..|++++++ |||...+++++.+.+.+.++|+.|++.|||.|.+.|++..+.+..
T Consensus 1 ~~~ellqcf~qTldada~~rt~AE~~Lk~leKq--PgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~ 78 (970)
T COG5656 1 MREELLQCFLQTLDADAGKRTIAEAMLKDLEKQ--PGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIK 78 (970)
T ss_pred ChHHHHHHHHHHhccCcchhhHHHHHHHHhhcC--CcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCC
Confidence 789999999999999999999999999999999 999999999999988899999999999999999988864322100
Q ss_pred hccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhh
Q 039062 81 RWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCE 160 (871)
Q Consensus 81 ~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~ 160 (871)
....++.|..+++.++..+.......|...-.++..|...++|...|+ +.|...+.+.+++..+...++.++..+++
T Consensus 79 --~Dek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfk 155 (970)
T COG5656 79 --ADEKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFK 155 (970)
T ss_pred --CcccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHH
Confidence 013346666666677776666667778788888888899999988999 99999999999999999999999999998
Q ss_pred ccCCCccc-hhh----HHHHHHHHHh---hhc--CCCCCHHHHHHHHHHHHHhhhcc-hhcccChhhHHHHHHHHHHhhc
Q 039062 161 EVSPDVVE-QDH----VNKILTAVVQ---GMN--ASEMNNDVRLAATRALYNALSFA-QANFSNDMERDYIMRVVCEATQ 229 (871)
Q Consensus 161 ~~~~~~~~-~~~----~~~i~~~l~~---~l~--~~~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~~~i~~~l~~~l~ 229 (871)
...-+.-+ +.. ...++|.+.+ .+. +++.+.++-...++.++....+. +..+...+.....++.....++
T Consensus 156 ayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~q 235 (970)
T COG5656 156 AYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQ 235 (970)
T ss_pred HHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHc
Confidence 75211110 222 2333333332 222 12345566666777666655432 3223222222223333333222
Q ss_pred --------cCcHHH---------HHHHHHHHHHHHHHhHHh------------hHHhHHHHHHHHHHHhh---CCC---h
Q 039062 230 --------SAELKI---------RQAAFECLVSISSTYYEK------------LAPYMQDIYSITAKAVR---EDE---E 274 (871)
Q Consensus 230 --------~~~~~~---------~~~a~~~l~~l~~~~~~~------------~~~~~~~l~~~~~~~~~---~~~---~ 274 (871)
+-|+++ ++-|+..+..+.+++... +...++.+++.++..+. +.. .
T Consensus 236 kplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWls 315 (970)
T COG5656 236 KPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWLS 315 (970)
T ss_pred CCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeecc
Confidence 113433 466777777777664321 11122333333333331 111 1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHH-HHHHHhcccCCcc---cc-----------
Q 039062 275 PVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPL-LLEILLKQEEDQD---QE----------- 339 (871)
Q Consensus 275 ~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~~~~d~~---~~----------- 339 (871)
+.....+.++...|..... .+.++++++..++.. ++..++-.+++.+ +|
T Consensus 316 d~~LYfi~~Fve~cv~~d~----------------tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df 379 (970)
T COG5656 316 DIELYFIDFFVELCVDADQ----------------TWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDF 379 (970)
T ss_pred hHHHHHHHHHHHHHhhhHh----------------hHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcch
Confidence 2333344444443332110 134556665544432 2333332322211 11
Q ss_pred -cccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhc-C-------CChhhHHHHHHHHHHhhcCCC-hhhhhHHHH-
Q 039062 340 -EGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIA-K-------PDWRQREAATYAFGSILEGPS-PDKLLHIVN- 408 (871)
Q Consensus 340 -~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~-~-------~~~~~r~~a~~~l~~l~~~~~-~~~~~~~l~- 408 (871)
++..++..+|..++-.+...-+++.+..+++++...++ + .+.+..++|+..++++..-.+ ...+...+.
T Consensus 380 ~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~ 459 (970)
T COG5656 380 FDNGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEY 459 (970)
T ss_pred hcCCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHH
Confidence 11234455677777777777788888888888877662 1 346678899999998887221 123333443
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHhh
Q 039062 409 VALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDT-PNVAEKACGALYFLAQG 487 (871)
Q Consensus 409 ~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-~~v~~~a~~~l~~l~~~ 487 (871)
-+++.+++.+ +++.-..|..+|..++++.+.++ ....+...+.....+++++ -.|+..|+.|+..|+.+
T Consensus 460 fiv~hv~P~f-~s~ygfL~Srace~is~~eeDfk---------d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~ 529 (970)
T COG5656 460 FIVNHVIPAF-RSNYGFLKSRACEFISTIEEDFK---------DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFN 529 (970)
T ss_pred HHHHHhhHhh-cCcccchHHHHHHHHHHHHHhcc---------cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhc
Confidence 4678999999 99999999999999999977664 2445667778888888874 46888899999988765
Q ss_pred cccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----HHHHhhhcc
Q 039062 488 YEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMM----ELHKTLEGQ 563 (871)
Q Consensus 488 ~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~----~l~~~~~~~ 563 (871)
.. ..+.+..|++++++.++.+.+..+. ...-.++..++...++...|+.++++..+.+ +..+....+
T Consensus 530 ~q---~h~k~sahVp~tmekLLsLSn~fei------D~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens 600 (970)
T COG5656 530 EQ---SHEKFSAHVPETMEKLLSLSNTFEI------DPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENS 600 (970)
T ss_pred hh---hhHHHHhhhhHHHHHHHHhcccccc------hHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 42 2466788999999999998876643 2466778888999998888888888877766 333333221
Q ss_pred CC---ChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhH-HHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhh
Q 039062 564 KL---SSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYA-DQIMGLFLRVFACRSATVHEEAMLAIGALAYAAG 639 (871)
Q Consensus 564 ~~---~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 639 (871)
.. ..||.+ -.....++++..++-++... +. ...+. ..+.|.+-=++.+.-.+....++..+....-..
T Consensus 601 ~d~~s~vDDKq---maasGiL~T~~smiLSlen~---p~-vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~s- 672 (970)
T COG5656 601 SDTSSVVDDKQ---MAASGILRTIESMILSLENR---PL-VLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMS- 672 (970)
T ss_pred ccccccccHHH---HHHHHHHHHHHHHHHhcccc---hH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH-
Confidence 10 112221 23344566666666666643 12 33333 344455444555555567778888887776544
Q ss_pred hhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhccc---ccHHHHHHHHHHHccCCCCCCcCCchHHHHH
Q 039062 640 LDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKIL---PYCDGIMTQLLKDLSSNQLHRSVKPPIFSCF 716 (871)
Q Consensus 640 ~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~---~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l 716 (871)
..+.|..+.++..+...+.+.........+..++.++.-..+..+. -|..-+.......+.++...-+-+..++..+
T Consensus 673 keI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~ 752 (970)
T COG5656 673 KEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRII 752 (970)
T ss_pred HHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHH
Confidence 4566888899999988887654334445666777888777664443 2445555555566666532235567788888
Q ss_pred HHHHHhhccC-hHHhHHHHHHHHHHHHhh
Q 039062 717 GDIALAIGEN-FEKYLMYAMPMLQSAADL 744 (871)
Q Consensus 717 ~~i~~~~~~~-~~~~~~~i~~~l~~~l~~ 744 (871)
..++.+++.. ..+|+|-+.......+..
T Consensus 753 e~l~Ln~rd~Ll~qy~plfi~vags~l~~ 781 (970)
T COG5656 753 ESLILNIRDELLSQYLPLFISVAGSGLKM 781 (970)
T ss_pred HHHHHHccchhHHhhhHHHHHHHhhhhhc
Confidence 8899888874 456766555555444433
No 15
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.97 E-value=2.3e-25 Score=221.21 Aligned_cols=630 Identities=14% Similarity=0.126 Sum_probs=421.7
Q ss_pred hcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhccc-------
Q 039062 140 VHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFS------- 212 (871)
Q Consensus 140 l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~------- 212 (871)
+-++|+++|..|-.-|..+. ...+.++...+.+.+.+....+.+|-.|.-+|++-+...+....
T Consensus 14 vLspD~n~rl~aE~ql~~l~---------~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW 84 (858)
T COG5215 14 VLSPDPNARLRAEAQLLELQ---------SGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRW 84 (858)
T ss_pred cCCCCCCccccHHHHHHHhc---------cccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhh
Confidence 44677778777766665543 23456666667777765467889999999999887643221110
Q ss_pred ---ChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHh--HHhhHHhHHHHHHHHHHHhhCCCh-hHHHHHHHHHHH
Q 039062 213 ---NDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTY--YEKLAPYMQDIYSITAKAVREDEE-PVALQAIEFWSS 286 (871)
Q Consensus 213 ---~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~a~~~~~~ 286 (871)
..+.++++.....+.+.++.+.....|.+.+..++... ...|.. ++..+.....+..+ ..+..++..++.
T Consensus 85 ~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~----lm~~mv~nvg~eqp~~~k~~sl~~~gy 160 (858)
T COG5215 85 LGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPG----LMEEMVRNVGDEQPVSGKCESLGICGY 160 (858)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchH----HHHHHHHhccccCchHhHHHHHHHHHH
Confidence 12334567777788899999999999999999998752 223333 44444445555444 466677888888
Q ss_pred HHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHH-HHHHcC----
Q 039062 287 ICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGL-VARTVG---- 361 (871)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~-l~~~~~---- 361 (871)
.|+.+. +.-+......++-.++.-- ..+++ +..+|-+|..+|.. +...-+
T Consensus 161 ~ces~~------------------Pe~li~~sN~il~aiv~ga--~k~et-----~~avRLaaL~aL~dsl~fv~~nf~~ 215 (858)
T COG5215 161 HCESEA------------------PEDLIQMSNVILFAIVMGA--LKNET-----TSAVRLAALKALMDSLMFVQGNFCY 215 (858)
T ss_pred HhhccC------------------HHHHHHHhhHHHHHHHHhh--cccCc-----hHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 887541 1111111111222121111 11111 14788888888765 322212
Q ss_pred CCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHH-HHHHHHccCCCcHHHHHHHHHHHHHHhhh
Q 039062 362 DDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVAL-SFMLSALTKDPNNHVKDTTAWTLGRIFEF 440 (871)
Q Consensus 362 ~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~-~~l~~~l~~d~~~~vr~~a~~~l~~~~~~ 440 (871)
+.-...+++.+.+..+.++-....++.-|+..++.-. ++.+.+|+...+ ......+ +++|..|...+...-+.+++.
T Consensus 216 E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~Ly-Y~fm~~ymE~aL~alt~~~m-ks~nd~va~qavEfWsticeE 293 (858)
T COG5215 216 EEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLY-YKFMQSYMENALAALTGRFM-KSQNDEVAIQAVEFWSTICEE 293 (858)
T ss_pred hhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHHHHHHHH
Confidence 2223456666777778888899999999999998765 578888886554 5666778 999999877766555556553
Q ss_pred hcc------CCCC----CCccchhhHHHHHHHHHHhccC--------ChHHHHHHHHHHHHHHhhcccC-----------
Q 039062 441 LHG------STIG----TPIITQANCQQIITVLLQSMKD--------TPNVAEKACGALYFLAQGYEDV----------- 491 (871)
Q Consensus 441 ~~~------~~~~----~~~~~~~~~~~il~~l~~~l~d--------~~~v~~~a~~~l~~l~~~~~~~----------- 491 (871)
--. ..++ ...+......+++|.+++.|.. .|++..+|..||.-|++.+++.
T Consensus 294 eid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEq 373 (858)
T COG5215 294 EIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQ 373 (858)
T ss_pred HhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHH
Confidence 210 0000 1122233456689999888862 3667666666666665543321
Q ss_pred -----------------------CCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHH--HHH
Q 039062 492 -----------------------GPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAP--MVL 546 (871)
Q Consensus 492 -----------------------~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~ 546 (871)
.....+.+++++.++.+.....++. -.++..+.+|++.++++.+....| ++.
T Consensus 374 ni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~---l~vk~ttAwc~g~iad~va~~i~p~~Hl~ 450 (858)
T COG5215 374 NIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSC---LWVKSTTAWCFGAIADHVAMIISPCGHLV 450 (858)
T ss_pred hccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccce---eehhhHHHHHHHHHHHHHHHhcCcccccc
Confidence 0134567778888888887777553 367788899999999988743322 222
Q ss_pred HHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCC-CchhhhhhhHHHHHHHHHHHHcc--cCcch
Q 039062 547 QLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSE-PTKYVFMQYADQIMGLFLRVFAC--RSATV 623 (871)
Q Consensus 547 ~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~i~~~l~~~l~~--~~~~~ 623 (871)
......+.-+. |. +.+....++...+++..+.+.. ..++.+.+++..|++.++..-+. ++...
T Consensus 451 ~~vsa~liGl~----------D~----p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~ 516 (858)
T COG5215 451 LEVSASLIGLM----------DC----PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNL 516 (858)
T ss_pred HHHHHHHhhhh----------cc----chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhH
Confidence 22222221121 11 2344557777777777776432 11334677888888888875443 56778
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcC----------Cc----chhHHHHHHHHHHHHHHHhhhcccccHH
Q 039062 624 HEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQN----------FE----EYQVCAVTVGVVGDICRALEEKILPYCD 689 (871)
Q Consensus 624 ~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~----------~~----~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 689 (871)
|..++.+||.++..+++.+.+.+..+..++.+.+.. .+ -.+++.+.+.+|..+++..+.++.+.-+
T Consensus 517 R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D 596 (858)
T COG5215 517 RVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVED 596 (858)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHH
Confidence 999999999999998877766665555544433321 11 1256778889999999999999999889
Q ss_pred HHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHH
Q 039062 690 GIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEA 769 (871)
Q Consensus 690 ~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~ 769 (871)
++|+.+++.+.+.+ ...+-..++.+++.++.++++.|..|++.++|.+.+.++.. | ..+-..++-.
T Consensus 597 ~lm~Lf~r~les~~-~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~------d-------~~v~~~avgl 662 (858)
T COG5215 597 QLMELFIRILESTK-PTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCT------D-------RFVLNSAVGL 662 (858)
T ss_pred HHHHHHHHHHhccC-CchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcch------h-------HHHHHHHHHH
Confidence 99999999998763 34566789999999999999999999999999999999654 2 2233344444
Q ss_pred HHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHc
Q 039062 770 YSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLS 848 (871)
Q Consensus 770 ~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~ 848 (871)
++.|... .+..|.+|.+.+++.+.++++++..+++++.+++++||+|+..+|.+|.+||+. |..++..+++
T Consensus 663 vgdlant-----l~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~---im~L~qqas~ 733 (858)
T COG5215 663 VGDLANT-----LGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDM---IMMLFQQASE 733 (858)
T ss_pred HHHHHHH-----hhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHhc
Confidence 5555554 456699999999999999999988899999999999999999999999999997 7777777773
No 16
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.6e-22 Score=205.36 Aligned_cols=721 Identities=15% Similarity=0.193 Sum_probs=483.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH-HHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhc
Q 039062 4 EVTQVLLNAQSIDGTVRKHAEESLKQ-FQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRW 82 (871)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~A~~~L~~-~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~ 82 (871)
.+...|..+.++++..|+.|-..|+. ...-.+-..+..++-++.+++.+++-|++-.-++-+.+.
T Consensus 364 ~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLy-------------- 429 (1172)
T KOG0213|consen 364 KIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILY-------------- 429 (1172)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHH--------------
Confidence 46778888999999999999999974 444455567777888888889999999998777766543
Q ss_pred cCCCHHHHHHHHHHHHH---hhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 039062 83 LSLDANVKTQIKTCLLN---TLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLC 159 (871)
Q Consensus 83 ~~~~~~~~~~i~~~ll~---~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~ 159 (871)
+++.-.+.+++..|+- .+.+++...|..--++|+.+++.. ++...+..+.--+.+.++.+|...-++++.+.
T Consensus 430 -klDdlvrpYVhkILvViepllided~yar~egreIisnLakaa----Gla~mistmrpDidn~deYVRnttarafavva 504 (1172)
T KOG0213|consen 430 -KLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAA----GLATMISTMRPDIDNKDEYVRNTTARAFAVVA 504 (1172)
T ss_pred -hhcccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHh----hhHHHHHhhcCCcccccHHHHHHHHHHHHHHH
Confidence 3455555666654443 467788888888888888888775 56677777777788889999999999998887
Q ss_pred hccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHH
Q 039062 160 EEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAA 239 (871)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a 239 (871)
..+ . .+.+++.+...+.+ ..+++-|..++++..++..+.+...- .+...++.++-..+.+....+|..+
T Consensus 505 sal-g-------ip~llpfLkavc~S-kkSwqaRhTgIkivqqIail~Gcsvl--phl~~lv~ii~~gl~De~qkVR~it 573 (1172)
T KOG0213|consen 505 SAL-G-------IPALLPFLKAVCGS-KKSWQARHTGIKIVQQIAILSGCSVL--PHLKPLVKIIEHGLKDEQQKVRTIT 573 (1172)
T ss_pred HHh-C-------cHHHHHHHHHHhcc-ccchhhhchhhHHHHHHHHHhcchhh--hhhHHHHHHHHHhhcccchhhhhHH
Confidence 765 1 34555555555554 56999999999999998876553221 1335678888888998899999999
Q ss_pred HHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHh
Q 039062 240 FECLVSISSTYYEKLAPYMQDIYSITAKAVREDEE---PVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQ 316 (871)
Q Consensus 240 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (871)
..+++.+++..+.+-...++.++..+|..+..... ...+.|+.++..+.+.+.. ..|.++
T Consensus 574 Alalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya-----------------~yyTre 636 (1172)
T KOG0213|consen 574 ALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYA-----------------SYYTRE 636 (1172)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHH-----------------HHhHHH
Confidence 99999999988777777888999999998865432 2334555555444443210 122222
Q ss_pred hhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCC---cccchHHHHHhhhcCCChhhHHHH------
Q 039062 317 ALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDD---IVPLVIPFIEENIAKPDWRQREAA------ 387 (871)
Q Consensus 317 ~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~~a------ 387 (871)
++-++...... +|+ ..++...+.+...|..-|-+ ....++|.+... -|..|.|.
T Consensus 637 ----vmlil~rEf~s----PDe-----emkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~----fw~rrmA~drr~yk 699 (1172)
T KOG0213|consen 637 ----VMLILIREFGS----PDE-----EMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFS----FWGRRMALDRRNYK 699 (1172)
T ss_pred ----HHHHHHHhhCC----ChH-----HHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhh----hhhhhhhccccchh
Confidence 22222222211 111 34555566666666655522 112222222222 24444332
Q ss_pred --HHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHH
Q 039062 388 --TYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQ 465 (871)
Q Consensus 388 --~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 465 (871)
...-..++...+ -..++..++..+ .|+.+..|..++.++.++...++.. .+....-+.++..++-
T Consensus 700 qlv~ttv~ia~KvG-------~~~~v~R~v~~l-kde~e~yrkm~~etv~ri~~~lg~~-----diderleE~lidgil~ 766 (1172)
T KOG0213|consen 700 QLVDTTVEIAAKVG-------SDPIVSRVVLDL-KDEPEQYRKMVAETVSRIVGRLGAA-----DIDERLEERLIDGILY 766 (1172)
T ss_pred hHHHHHHHHHHHhC-------chHHHHHHhhhh-ccccHHHHHHHHHHHHHHHhccccc-----cccHHHHHHHHHHHHH
Confidence 001111111111 134667777888 9999999999999999998887632 2333333445555555
Q ss_pred hccC---ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcH
Q 039062 466 SMKD---TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETA 542 (871)
Q Consensus 466 ~l~d---~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 542 (871)
.++. ...|.-. .+..++..+ ..-..||+++|+..++..+++. ..++|..|.+.++.++......-.
T Consensus 767 Afqeqtt~d~vml~---gfg~V~~~l-----g~r~kpylpqi~stiL~rLnnk---sa~vRqqaadlis~la~Vlktc~e 835 (1172)
T KOG0213|consen 767 AFQEQTTEDSVMLL---GFGTVVNAL-----GGRVKPYLPQICSTILWRLNNK---SAKVRQQAADLISSLAKVLKTCGE 835 (1172)
T ss_pred HHHhcccchhhhhh---hHHHHHHHH-----hhccccchHHHHHHHHHHhcCC---ChhHHHHHHHHHHHHHHHHHhccH
Confidence 5542 1223222 233333333 3456799999999999999987 468999999999999877653110
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcc
Q 039062 543 PMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSAT 622 (871)
Q Consensus 543 ~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 622 (871)
.++|..+-..+-+++ +++. +++.+.++.++.+|++..|-.. +.|-+..++|.+..+|.+.+..
T Consensus 836 ---e~~m~~lGvvLyEyl-----geey----pEvLgsILgAikaI~nvigm~k-----m~pPi~dllPrltPILknrheK 898 (1172)
T KOG0213|consen 836 ---EKLMGHLGVVLYEYL-----GEEY----PEVLGSILGAIKAIVNVIGMTK-----MTPPIKDLLPRLTPILKNRHEK 898 (1172)
T ss_pred ---HHHHHHhhHHHHHhc-----Cccc----HHHHHHHHHHHHHHHHhccccc-----cCCChhhhcccchHhhhhhHHH
Confidence 233444444444433 2333 3567778888888988887543 5566788999999999998889
Q ss_pred hhhhHHHHHHHHHHHhhhhhh--hhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHcc
Q 039062 623 VHEEAMLAIGALAYAAGLDFA--KYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLS 700 (871)
Q Consensus 623 ~~~~a~~~l~~l~~~~~~~~~--~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 700 (871)
+++.++..++.++...++.+. .++. |.=-|+..|+.. ...+|.+|...+|.|++.+|. .+++..|++.|+
T Consensus 899 Vqen~IdLvg~IadrgpE~v~aREWMR-IcfeLlelLkah-kK~iRRaa~nTfG~IakaIGP------qdVLatLlnnLk 970 (1172)
T KOG0213|consen 899 VQENCIDLVGTIADRGPEYVSAREWMR-ICFELLELLKAH-KKEIRRAAVNTFGYIAKAIGP------QDVLATLLNNLK 970 (1172)
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHH-HHHHHHHHHHHH-HHHHHHHHHhhhhHHHHhcCH------HHHHHHHHhcch
Confidence 999999999999987654221 2332 333344455543 348999999999999999882 467788888888
Q ss_pred CCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039062 701 SNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNS 780 (871)
Q Consensus 701 ~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~ 780 (871)
.+ +...|...--+++.++..+|.- .++|.+.+-.... ...++.+++++++.+++.++.
T Consensus 971 vq--eRq~RvcTtvaIaIVaE~c~pF------tVLPalmneYrtP-------------e~nVQnGVLkalsf~Feyige- 1028 (1172)
T KOG0213|consen 971 VQ--ERQNRVCTTVAIAIVAETCGPF------TVLPALMNEYRTP-------------EANVQNGVLKALSFMFEYIGE- 1028 (1172)
T ss_pred HH--HHHhchhhhhhhhhhhhhcCch------hhhHHHHhhccCc-------------hhHHHHhHHHHHHHHHHHHHH-
Confidence 76 5566666677777777777754 6777777655432 256889999999999998653
Q ss_pred ccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHH---cCCChhhHHH
Q 039062 781 PKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECL---SSKDHMIKES 857 (871)
Q Consensus 781 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~---~~~~~~~~~~ 857 (871)
.-+.|+..+.|.+...+.| +|..-|..|.+++..++..... +. ..+....+|+.+- -...+.+.+.
T Consensus 1029 ----mskdYiyav~PlleDAlmD--rD~vhRqta~~~I~Hl~Lg~~g-~g----~eda~iHLLN~iWpNIle~sPhviqa 1097 (1172)
T KOG0213|consen 1029 ----MSKDYIYAVTPLLEDALMD--RDLVHRQTAMNVIKHLALGVPG-TG----CEDALIHLLNLIWPNILETSPHVIQA 1097 (1172)
T ss_pred ----HhhhHHHHhhHHHHHhhcc--ccHHHHHHHHHHHHHHhcCCCC-cC----cHHHHHHHHHHhhhhhcCCChHHHHH
Confidence 3567888899999888886 5677799999999999876432 11 1111222333322 1356788888
Q ss_pred HHHHHHHHHHHhc
Q 039062 858 AEWARLAINKAIS 870 (871)
Q Consensus 858 ~~~~~~~~~~~~~ 870 (871)
--.++..++.+||
T Consensus 1098 ~~e~~eg~r~~Lg 1110 (1172)
T KOG0213|consen 1098 FDEAMEGLRVALG 1110 (1172)
T ss_pred HHHHHHHHHHHhc
Confidence 8888888888876
No 17
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=9.1e-22 Score=202.15 Aligned_cols=744 Identities=13% Similarity=0.127 Sum_probs=418.6
Q ss_pred CccHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHH
Q 039062 1 MAMEVTQVLLNAQSI--DGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFEL 78 (871)
Q Consensus 1 ~~~~l~~~l~~~~s~--~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~ 78 (871)
|.+++.|++.++.+| |++.|++|.++++++++. |+.|..+.+++++.+..+.+|..+...|-..++
T Consensus 1 ~mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsS--p~aw~Icie~l~~~ts~d~vkf~clqtL~e~vr---------- 68 (980)
T KOG2021|consen 1 MMDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSS--PNAWEICIELLINETSNDLVKFYCLQTLIELVR---------- 68 (980)
T ss_pred CchHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCC--ccHHHHHHHHHHhhcccchhhhhhHHHHHHHHH----------
Confidence 556899999999887 889999999999999999 999999999999877899999999999977765
Q ss_pred hhhccCCCHHHHHHHHHHHHHh-----hcCC----chHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChH-HH
Q 039062 79 VQRWLSLDANVKTQIKTCLLNT-----LTST----VADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAH-VK 148 (871)
Q Consensus 79 ~~~~~~~~~~~~~~i~~~ll~~-----l~~~----~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~-~r 148 (871)
..+...+...++.+|..++.- +.++ .+-++++++++++.+.-.+|| ..|+.++..+...+.-+... -.
T Consensus 69 -ekyne~nl~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp-~~WnsfF~dlmsv~~~~s~~~~~ 146 (980)
T KOG2021|consen 69 -EKYNEANLNELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYP-DCWNSFFDDLMSVFQVDSAISGL 146 (980)
T ss_pred -HhhccCCHHHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhcccchhhH
Confidence 234457888889999998774 4455 358999999999999999999 68999999998887654321 12
Q ss_pred HHHHHHHHHHhhccC-------CCc----------cchhhHHHHHHHHHhhhcCC--CCCHHHHHHHHHHHHHhhhcchh
Q 039062 149 QATLETLGYLCEEVS-------PDV----------VEQDHVNKILTAVVQGMNAS--EMNNDVRLAATRALYNALSFAQA 209 (871)
Q Consensus 149 ~~al~~l~~l~~~~~-------~~~----------~~~~~~~~i~~~l~~~l~~~--~~~~~vr~~al~~l~~~~~~~~~ 209 (871)
.--++++-.|-.++. ++. +.++..++++..+.+.+... ..++.+-..+++|++.+++|++-
T Consensus 147 dfflkvllaIdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdI 226 (980)
T KOG2021|consen 147 DFFLKVLLAIDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDI 226 (980)
T ss_pred HHHHHHHHHhhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhh
Confidence 222333333222220 111 11245677777777776542 23788999999999999999875
Q ss_pred cccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhh--HHhHHH---HHHHHHHHhh--------------
Q 039062 210 NFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKL--APYMQD---IYSITAKAVR-------------- 270 (871)
Q Consensus 210 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~---l~~~~~~~~~-------------- 270 (871)
+... .+.+++.++..++ -.++|.+|++|+.+++++.-+-+ .+.+.. ..+.....-.
T Consensus 227 nLIa---Nd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vsk 301 (980)
T KOG2021|consen 227 NLIA---NDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSK 301 (980)
T ss_pred hhhh---chhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHH
Confidence 5432 2778999999887 56899999999999997632211 111111 1111110000
Q ss_pred ------------------CCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhH-----------------H
Q 039062 271 ------------------EDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFI-----------------K 315 (871)
Q Consensus 271 ------------------~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 315 (871)
..+......+...+....-. +-++....+++.......|. .
T Consensus 302 Litg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpy----llq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk 377 (980)
T KOG2021|consen 302 LITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPY----LLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQK 377 (980)
T ss_pred HHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHH----HHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhh
Confidence 11111222222211111110 00010000111110000111 1
Q ss_pred hhhhhhHHHHHHHHhccc-----CC-cc-cccccc-cHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhc---CCChhhH
Q 039062 316 QALPALVPLLLEILLKQE-----ED-QD-QEEGAW-NIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIA---KPDWRQR 384 (871)
Q Consensus 316 ~~~~~l~~~l~~~l~~~~-----~d-~~-~~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~---~~~~~~r 384 (871)
..+..++......+++.+ ++ ++ ++|+.+ ++|+.-...++.++..-|+-++..+...+...+. ..+|..-
T Consensus 378 ~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqev 457 (980)
T KOG2021|consen 378 VPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEV 457 (980)
T ss_pred ccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 112233444444454432 22 11 222222 6677666667777666664444445555544443 3679999
Q ss_pred HHHHHHHHHhhcCCChhh-------hh--HHHHHHHHHHHH--HccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccch
Q 039062 385 EAATYAFGSILEGPSPDK-------LL--HIVNVALSFMLS--ALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQ 453 (871)
Q Consensus 385 ~~a~~~l~~l~~~~~~~~-------~~--~~l~~i~~~l~~--~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 453 (871)
+.|++.+..++++..... .. ..+..+.+.+.. .. .++|+.|+---+..+.++...+. ...
T Consensus 458 E~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~-~h~h~lVqLlfmE~ivRY~kff~--------~es 528 (980)
T KOG2021|consen 458 ELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVL-AHDHELVQLLFMELIVRYNKFFS--------TES 528 (980)
T ss_pred HHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccc-cCCchHHHHHHHHHHHHHHHHHh--------cch
Confidence 999999999998753111 11 222334444332 23 78899999888888889888875 235
Q ss_pred hhHHHHHHHHHH--hccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCC---------hhhhh
Q 039062 454 ANCQQIITVLLQ--SMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRED---------AGESR 521 (871)
Q Consensus 454 ~~~~~il~~l~~--~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~---------~~~~~ 521 (871)
.+++.++.+++. .+.. +.+||.+|...+.++++.+ +..+.||.+.++..+.+.+.... ....+
T Consensus 529 q~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlL-----kkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fd 603 (980)
T KOG2021|consen 529 QKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLL-----KKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFD 603 (980)
T ss_pred hhhHHHHHHHccchhccccccccchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCcCCCcCcccccccccc
Confidence 577778877765 3443 6899999999999999876 56788999999999998882110 00112
Q ss_pred HHHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHHHhhh-ccCCC-hhhHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 039062 522 LRTAAYETLNEVVRSST---DETAPMVLQLVPVIMMELHKTLE-GQKLS-SDEREKQGELQGLLCGCLQVIIQKLGSSEP 596 (871)
Q Consensus 522 vr~~a~~~l~~l~~~~~---~~~~~~~~~ll~~l~~~l~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 596 (871)
-+...++++|.++..-. +....|...++.+++....-... ....+ .+.+....++. .++-+++.+++++.....
T Consensus 604 dqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~-~~lmaig~lakgf~~rlv 682 (980)
T KOG2021|consen 604 DQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECH-HILMAIGTLAKGFHIRLV 682 (980)
T ss_pred ccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHH-HHHHHHHHHhhcccccCc
Confidence 23467888888876543 34455666666555433221100 00001 11122211111 122333334433332210
Q ss_pred chhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHH
Q 039062 597 TKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDI 676 (871)
Q Consensus 597 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l 676 (871)
+.+ +-+. +..|..-++.+++.+....+.+ .+|...-..++.+
T Consensus 683 t~~-------------------------qvg~----------~~vf~~~ldvil~~ls~f~k~E---~iRsavrft~hRm 724 (980)
T KOG2021|consen 683 TEN-------------------------QVGN----------MVVFSNILDVILVTLSFFNKFE---NIRSAVRFTFHRM 724 (980)
T ss_pred chh-------------------------cccH----------HHHHHHHHHHHHHHHhhccccc---hhHHHHHHHHHHH
Confidence 000 0000 0112223344444444333221 4555555666666
Q ss_pred HHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhccc--CCCCChh
Q 039062 677 CRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAH--TANVDDD 754 (871)
Q Consensus 677 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~--~~~~d~~ 754 (871)
...+++.+.||++..++.++.-.+ ...-...+..+..+...+..+..+.+++++|.+...+-.... ....|.+
T Consensus 725 I~~lg~~vlPfipklie~lL~s~d-----~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfsvi~r~a~p~dt~ 799 (980)
T KOG2021|consen 725 IPILGNKVLPFIPKLIELLLSSTD-----LKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFSVIERIAKPIDTA 799 (980)
T ss_pred HHhcchhhhcchHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChh
Confidence 666666666666666666553211 112234556666666666677777777777766544432211 0001211
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc-cCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhc
Q 039062 755 MTEYTNSLRNGILEAYSGIFQGF-KNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLG 826 (871)
Q Consensus 755 ~~~~~~~~r~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~ 826 (871)
..-....+|.+.+..+..+...- ++.........+.+.++..+...... .-++-..+....+...+...+|
T Consensus 800 aa~ek~~lrksy~~fLqtftn~g~~silat~~n~~~~~~iln~l~~~a~~-y~dpmmQksln~lcnk~v~lwg 871 (980)
T KOG2021|consen 800 AAAEKILLRKSYCTFLQTFTNNGVTSILATDINRAILPVILNDLVTYAPQ-YIDPMMQKSLNVLCNKIVCLWG 871 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcceeeeccchhhhhhHHHHHhhhcccc-ccCHHHHHHHHHHHHHHHHhcC
Confidence 11112566777666666655331 11111122233444455555544322 2344444444444445555554
No 18
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.92 E-value=2.4e-21 Score=194.52 Aligned_cols=724 Identities=13% Similarity=0.130 Sum_probs=464.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH-HHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhc
Q 039062 4 EVTQVLLNAQSIDGTVRKHAEESLKQ-FQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRW 82 (871)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~A~~~L~~-~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~ 82 (871)
.+..+|....++++..|+.+-..|+. .....+...+..++.++.+-+.+++-|++..-++-+.+.
T Consensus 169 ~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly-------------- 234 (975)
T COG5181 169 DVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLY-------------- 234 (975)
T ss_pred hHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHH--------------
Confidence 46778888899999999999999974 444456667777888887778889999998777766553
Q ss_pred cCCCHHHHHHHHHHHHH---hhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 039062 83 LSLDANVKTQIKTCLLN---TLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLC 159 (871)
Q Consensus 83 ~~~~~~~~~~i~~~ll~---~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~ 159 (871)
.++.-.+.+++..|+- .+.+++...|..--++|..++... ++...+..+.--+.+.++.+|...-++.+...
T Consensus 235 -~lddl~~pyvhkILvVv~pllided~~~r~~g~eii~nL~~~~----Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva 309 (975)
T COG5181 235 -GLDDLKVPYVHKILVVVGPLLIDEDLKRRCMGREIILNLVYRC----GLGFSVSSMRPDITSKDEYVRNVTGRAVGVVA 309 (975)
T ss_pred -hcccccccceeeEEEEeeccccCccHHHhcccHHHHHHHHHHh----ccceeeeeccCCcccccHHHHHHHHHHHHHHH
Confidence 2344344444443332 466788888888888888887664 33444455555567778889988888888776
Q ss_pred hccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHH
Q 039062 160 EEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAA 239 (871)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a 239 (871)
..+ . ++++++.+-..+.+ ..+++-|..++++..++..+.+...- .+...++..+..++.+....+|..+
T Consensus 310 ~al-g-------v~~llpfl~a~c~S-rkSw~aRhTgiri~qqI~~llG~s~l--~hl~~l~~ci~~~l~D~~~~vRi~t 378 (975)
T COG5181 310 DAL-G-------VEELLPFLEALCGS-RKSWEARHTGIRIAQQICELLGRSRL--SHLGPLLKCISKLLKDRSRFVRIDT 378 (975)
T ss_pred Hhh-C-------cHHHHHHHHHHhcC-ccchhhhchhhHHHHHHHHHhCccHH--hhhhhHHHHHHHHhhccceeeeehh
Confidence 655 1 34455555555553 56899999999999998776553221 1235678888888988888999999
Q ss_pred HHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHh
Q 039062 240 FECLVSISSTYYEKLAPYMQDIYSITAKAVREDEE---PVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQ 316 (871)
Q Consensus 240 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (871)
...+..+++..+.+-...++.++..+|...+.... .....|+.++.-+.+. +|. .++.++
T Consensus 379 A~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~p------eYa-----------~h~tre 441 (975)
T COG5181 379 ANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSP------EYA-----------CHDTRE 441 (975)
T ss_pred HhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCCh------Hhh-----------hhhHHH
Confidence 99999999988877778888999999998865332 2233444444333332 221 123333
Q ss_pred hhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHH-------
Q 039062 317 ALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATY------- 389 (871)
Q Consensus 317 ~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~------- 389 (871)
...+++..+...+|+ ..+ ......+.|...+...-..+...+..-+.++-|..|-|+-.
T Consensus 442 ----~m~iv~ref~spdee---------mkk-~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~ 507 (975)
T COG5181 442 ----HMEIVFREFKSPDEE---------MKK-DLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVV 507 (975)
T ss_pred ----HHHHHHHHhCCchhh---------cch-hHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceee
Confidence 233444333322111 111 12223334444432221122223333334556776655411
Q ss_pred -HHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhcc
Q 039062 390 -AFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMK 468 (871)
Q Consensus 390 -~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 468 (871)
.-..++...+ -+.+...++..+ .|+....|..+..+..++...++.. .+....-..++..++..++
T Consensus 508 ~ttvilAk~~g-------~~~v~~kil~~~-~De~ep~r~m~a~~vsri~~~lg~~-----~~dErleerl~d~il~Afq 574 (975)
T COG5181 508 LTTVILAKMGG-------DPRVSRKILEYY-SDEPEPYRKMNAGLVSRIFSRLGRL-----GFDERLEERLYDSILNAFQ 574 (975)
T ss_pred hhHHHHHHHcC-------ChHHHHHHHhhc-cCCcchhhhhhhHHHHHHHHhcccc-----cccHHHHHHHHHHHHHHHH
Confidence 1111111111 034677788889 9998888988888888888877532 2233333344444444444
Q ss_pred CC---hHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCC-CcHHH
Q 039062 469 DT---PNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTD-ETAPM 544 (871)
Q Consensus 469 d~---~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~ 544 (871)
.+ ..+.-.+ +....-.. .-...||+.+|+..+++.+++. .+.+|..|.+..+.++...+. .-
T Consensus 575 eq~~t~~~il~~---f~tv~vsl-----~~r~kp~l~~ivStiL~~L~~k---~p~vR~~aadl~~sl~~vlk~c~e--- 640 (975)
T COG5181 575 EQDTTVGLILPC---FSTVLVSL-----EFRGKPHLSMIVSTILKLLRSK---PPDVRIRAADLMGSLAKVLKACGE--- 640 (975)
T ss_pred hccccccEEEec---ccceeeeh-----hhccCcchHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHHHhcch---
Confidence 21 1111111 11111111 2335689999999999999987 468999999999998876541 11
Q ss_pred HHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchh
Q 039062 545 VLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVH 624 (871)
Q Consensus 545 ~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 624 (871)
...+..+-.++-+.+ +++.+ ++.+.++.++-+|....+-.. +.|-+..|+|.+..+|.+.+..+.
T Consensus 641 -~~~l~klg~iLyE~l-----ge~yp----EvLgsil~Ai~~I~sv~~~~~-----mqpPi~~ilP~ltPILrnkh~Kv~ 705 (975)
T COG5181 641 -TKELAKLGNILYENL-----GEDYP----EVLGSILKAICSIYSVHRFRS-----MQPPISGILPSLTPILRNKHQKVV 705 (975)
T ss_pred -HHHHHHHhHHHHHhc-----CcccH----HHHHHHHHHHHHHhhhhcccc-----cCCchhhccccccHhhhhhhHHHh
Confidence 122222222332222 23444 455666777777766665332 566778899999999999888899
Q ss_pred hhHHHHHHHHHHHhhhhhh--hhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCC
Q 039062 625 EEAMLAIGALAYAAGLDFA--KYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSN 702 (871)
Q Consensus 625 ~~a~~~l~~l~~~~~~~~~--~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 702 (871)
...+..++.++...++.+. .++. +.-.++..+++. ..++|.+|...+|.|++.+|. .+++..|++.|+.+
T Consensus 706 ~nti~lvg~I~~~~peyi~~rEWMR-IcfeLvd~Lks~-nKeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvq 777 (975)
T COG5181 706 ANTIALVGTICMNSPEYIGVREWMR-ICFELVDSLKSW-NKEIRRNATETFGCISRAIGP------QDVLDILLNNLKVQ 777 (975)
T ss_pred hhHHHHHHHHHhcCcccCCHHHHHH-HHHHHHHHHHHh-hHHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchHH
Confidence 9999999999987765332 2332 333344455544 348999999999999999873 46788888888877
Q ss_pred CCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCcc
Q 039062 703 QLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPK 782 (871)
Q Consensus 703 ~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~ 782 (871)
+...|....-+++..+..+|.- .++|.+..-.... ...++.+++++++.+++.++.
T Consensus 778 --eRq~RvctsvaI~iVae~cgpf------sVlP~lm~dY~TP-------------e~nVQnGvLkam~fmFeyig~--- 833 (975)
T COG5181 778 --ERQQRVCTSVAISIVAEYCGPF------SVLPTLMSDYETP-------------EANVQNGVLKAMCFMFEYIGQ--- 833 (975)
T ss_pred --HHHhhhhhhhhhhhhHhhcCch------hhHHHHHhcccCc-------------hhHHHHhHHHHHHHHHHHHHH---
Confidence 5666777777888888888864 5677777544332 256889999999999998654
Q ss_pred ccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHH---cCCChhhHHHHH
Q 039062 783 TQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECL---SSKDHMIKESAE 859 (871)
Q Consensus 783 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~---~~~~~~~~~~~~ 859 (871)
.-..|+..|.|.+...+.| +|..-|..|.++|..++..++..-. .+....+|+-+- -...+.+.+.--
T Consensus 834 --~s~dYvy~itPlleDAltD--rD~vhRqta~nvI~Hl~Lnc~gtg~-----eda~IHLlNllwpNIle~sPhvi~~~~ 904 (975)
T COG5181 834 --ASLDYVYSITPLLEDALTD--RDPVHRQTAMNVIRHLVLNCPGTGD-----EDAAIHLLNLLWPNILEPSPHVIQSFD 904 (975)
T ss_pred --HHHHHHHHhhHHHHhhhcc--cchHHHHHHHHHHHHHhcCCCCccc-----HHHHHHHHHHhhhhccCCCcHHHHHHH
Confidence 3567888899999888886 5787899999999999987643211 111222222222 236678888888
Q ss_pred HHHHHHHHHhcC
Q 039062 860 WARLAINKAISV 871 (871)
Q Consensus 860 ~~~~~~~~~~~~ 871 (871)
.++..++.+||+
T Consensus 905 Eg~e~~~~~lg~ 916 (975)
T COG5181 905 EGMESFATVLGS 916 (975)
T ss_pred HHHHHHHHHhcc
Confidence 888888888874
No 19
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.3e-16 Score=168.14 Aligned_cols=612 Identities=16% Similarity=0.202 Sum_probs=383.0
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhc
Q 039062 4 EVTQVLLNAQSI-DGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRW 82 (871)
Q Consensus 4 ~l~~~l~~~~s~-~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~ 82 (871)
++..++..++++ +.+....++++|++++.. +.-+..-.+++.. +....+|.++|+.|...|+ ..|
T Consensus 8 ~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S--~Q~w~~s~~llQ~-~k~~evqyFGAltL~~ki~-----------~~~ 73 (982)
T KOG2022|consen 8 TVEELVTTLYSHRNHENDAITQKWLQDAQCS--QQGWHFSWQLLQP-DKSSEVQYFGALTLHDKIN-----------TRW 73 (982)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhh--HHHHHHHHHHcCC-CchhHHHHHhHHHHHHHHH-----------hhh
Confidence 678888998886 899999999999999887 5444444455554 6677889999999999887 467
Q ss_pred cCCCHHHHHHHHHHHHHhhcC--Cc-hHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCC-----hHH-HHHHHH
Q 039062 83 LSLDANVKTQIKTCLLNTLTS--TV-ADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLP-----AHV-KQATLE 153 (871)
Q Consensus 83 ~~~~~~~~~~i~~~ll~~l~~--~~-~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~-----~~~-r~~al~ 153 (871)
..++++..+.++..++..+.. +. ..|-+..+..++.++-+..| +.||+.+..+...++... .+. ...-++
T Consensus 74 e~~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~-d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le 152 (982)
T KOG2022|consen 74 EECPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVP-DLWPTAIQDVIPTLQGQASPLVLADINCEILLE 152 (982)
T ss_pred ccCChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHcc-ccCCchHHHHHHHHhcccCccccchhhHHHHHH
Confidence 788999999999999987553 33 46777777777777777778 699999999999887632 122 223344
Q ss_pred HHHHHhhccCCCccc-----------h---hhHHHHHHHHHhhhcCCCCCH----HHHHHHHHHHHHhhhcchhcccC-h
Q 039062 154 TLGYLCEEVSPDVVE-----------Q---DHVNKILTAVVQGMNASEMNN----DVRLAATRALYNALSFAQANFSN-D 214 (871)
Q Consensus 154 ~l~~l~~~~~~~~~~-----------~---~~~~~i~~~l~~~l~~~~~~~----~vr~~al~~l~~~~~~~~~~~~~-~ 214 (871)
.|+.+..+.....+. . .....++..++....+ .... ..+.+|++|+..++.+..-.-.. .
T Consensus 153 ~Ls~~p~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n-~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~ 231 (982)
T KOG2022|consen 153 VLSFMPAEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSN-STSSLINLIFKQAAVDCVEQWIRYISLTGMDCD 231 (982)
T ss_pred HhccCcHhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhcccc-ccHHHHHHHhhhHHHHHHHHHHHHhccccccHH
Confidence 443222221000110 0 1111233333333321 1223 57888999999987643210000 0
Q ss_pred hhHH-------------------------------HHHHHHHHhh--------------------------------ccC
Q 039062 215 MERD-------------------------------YIMRVVCEAT--------------------------------QSA 231 (871)
Q Consensus 215 ~~~~-------------------------------~i~~~l~~~l--------------------------------~~~ 231 (871)
.... .+...+...+ .++
T Consensus 232 ~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~ 311 (982)
T KOG2022|consen 232 QITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENA 311 (982)
T ss_pred HHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0000 0000000001 111
Q ss_pred c--HHHHHHHHHHHHHHHHHhHHhhHHhH---------HHHHHHHHHHhhCC-----ChhHHHHHHHHHHHHHHHHHhhh
Q 039062 232 E--LKIRQAAFECLVSISSTYYEKLAPYM---------QDIYSITAKAVRED-----EEPVALQAIEFWSSICDEEIDIL 295 (871)
Q Consensus 232 ~--~~~~~~a~~~l~~l~~~~~~~~~~~~---------~~l~~~~~~~~~~~-----~~~~~~~a~~~~~~l~~~~~~~~ 295 (871)
| .+.-...+......+++....+..+. ..+++.+.....-+ ++.+...++.||..+.++.....
T Consensus 312 d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~ 391 (982)
T KOG2022|consen 312 DASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTI 391 (982)
T ss_pred CchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 1 11111111222222222111111111 11222222222211 23456678999999987644332
Q ss_pred hhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCc-----ccccccc-cHhHHHHHHHHHHHHHcCCCcccchH
Q 039062 296 EEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQ-----DQEEGAW-NIAMAGGTCLGLVARTVGDDIVPLVI 369 (871)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~-----~~~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~l~ 369 (871)
.+. .+..+..+.++++-.++.+++..+....++. .++.+++ ..|+...+++......+|+..+..+.
T Consensus 392 ~e~-------~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~~L~ 464 (982)
T KOG2022|consen 392 NET-------QQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILGDGLLDFLI 464 (982)
T ss_pred hcc-------CCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 111 0111223555777788888887776433211 1222333 46778888888888889999999899
Q ss_pred HHHHhhhcCCC-----hhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccC
Q 039062 370 PFIEENIAKPD-----WRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGS 444 (871)
Q Consensus 370 ~~l~~~l~~~~-----~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~ 444 (871)
..+.+.+.+.+ |..-++.++.+..+++..+ ....+.++.++......--.-++|..-.++...+|..+.++.+
T Consensus 465 ~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~-~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e- 542 (982)
T KOG2022|consen 465 DTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLG-ETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGE- 542 (982)
T ss_pred HHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcC-cchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhc-
Confidence 99998888765 9999999999999999886 5556666666654432210335888889999999999999963
Q ss_pred CCCCCccchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHH
Q 039062 445 TIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRT 524 (871)
Q Consensus 445 ~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~ 524 (871)
++.+++..+|.|++.++. ++....+...+..+|+.+ ++.|.||.++++..+-..+.+... ....|.
T Consensus 543 -------~P~~ln~sl~~L~~~Lh~-sk~s~q~i~tl~tlC~~C-----~~~L~py~d~~~a~~~e~l~~~~~-~~S~~~ 608 (982)
T KOG2022|consen 543 -------HPMYLNPSLPLLFQGLHN-SKESEQAISTLKTLCETC-----PESLDPYADQFSAVCYEVLNKSNA-KDSDRL 608 (982)
T ss_pred -------CCcccCchHHHHHHHhcC-chHHHHHHHHHHHHHHhh-----hhhCchHHHHHHHHHHHHhccccc-CchHHH
Confidence 577899999999999973 444556677799999876 678999999999998888876543 446789
Q ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCc------
Q 039062 525 AAYETLNEVVRSST-DETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPT------ 597 (871)
Q Consensus 525 ~a~~~l~~l~~~~~-~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~------ 597 (871)
.++.++|.+.+... +....|+.+++.+++..++...+. +.++++... .....+.+++.+...+..+.+.
T Consensus 609 klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~---~i~~~e~~l-~~~~~l~~iS~LftSL~~~~~~~d~d~~ 684 (982)
T KOG2022|consen 609 KLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAP---GIDDQENHL-RIAFQLNTISALFTSLINKKDIIDTDQP 684 (982)
T ss_pred HHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcC---CCCCHHHHH-HHHHHHHHHHHHHhccCCCCccccccch
Confidence 99999999999876 567789999999999888776431 234443321 2234567888888776543210
Q ss_pred h----h----hhhhhHHHHHHHHHHHHcc--cCcchhhhHHHHHHHHHHHhhhhh-hhhhHhHHHHHHhhhc
Q 039062 598 K----Y----VFMQYADQIMGLFLRVFAC--RSATVHEEAMLAIGALAYAAGLDF-AKYMPDFYKYLEMGLQ 658 (871)
Q Consensus 598 ~----~----~~~~~~~~i~~~l~~~l~~--~~~~~~~~a~~~l~~l~~~~~~~~-~~~l~~i~~~l~~~l~ 658 (871)
. + ....+...+++.+-+.+.. ++..+.+.++...+.=+...++.| .|+++.+.+.+.+...
T Consensus 685 ~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~ 756 (982)
T KOG2022|consen 685 EQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLT 756 (982)
T ss_pred hhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcc
Confidence 0 0 1222344455555444443 366677777777666666667778 7889999999988553
No 20
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.91 E-value=9.6e-17 Score=162.26 Aligned_cols=521 Identities=18% Similarity=0.269 Sum_probs=342.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccC
Q 039062 5 VTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (871)
Q Consensus 5 l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~ 84 (871)
+-++.+...-|++..+++|++-|.++++. |+.|....+|+.+ +..++.+..|+.+|.+.|.. .|+-
T Consensus 16 lDkVVttfyqg~g~~q~qAq~iLtkFq~~--PdaWtkad~IL~~-S~~pqskyiALs~LdklItt-----------kWkl 81 (1053)
T COG5101 16 LDKVVTTFYQGDGRKQEQAQRILTKFQEL--PDAWTKADYILNN-SKLPQSKYIALSLLDKLITT-----------KWKL 81 (1053)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhC--chHHHHHHHHHhc-ccCcchhhhHHHHHHHHHHh-----------hhhh
Confidence 44667788889999999999999999998 9999999999988 67899999999999999874 5778
Q ss_pred CCHHHHHHHHHHHHHhhcCC--chHHH-------HHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHH
Q 039062 85 LDANVKTQIKTCLLNTLTST--VADAR-------STSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETL 155 (871)
Q Consensus 85 ~~~~~~~~i~~~ll~~l~~~--~~~vr-------~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l 155 (871)
++.+.+..+|+-+++.+.+. +..+| +..-.++..|++.+|| ..||+++|.|++..+ .+-.+.+..+.+|
T Consensus 82 lp~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP-~nWP~FIpeli~~S~-~s~~vCeNnmivL 159 (1053)
T COG5101 82 LPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWP-RNWPTFIPELINVSQ-ISMEVCENNMIVL 159 (1053)
T ss_pred CCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcc-cccchhhHHHHhhcc-chHHHHhccHHHH
Confidence 89999999999998876542 23443 4566678899999999 799999999999765 5677888888888
Q ss_pred HHHhhcc---CCCccc-----------hhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHH
Q 039062 156 GYLCEEV---SPDVVE-----------QDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIM 221 (871)
Q Consensus 156 ~~l~~~~---~~~~~~-----------~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~ 221 (871)
..+.++. +.+.++ ...+++|+..+.+.+.. ..++.+-.+.++.+..+..+.+-.+..+ ..++
T Consensus 160 klLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~-~~~~SLi~ATLesllrfl~wiPl~yIfe---TnIi 235 (1053)
T COG5101 160 KLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEY-SRDESLIEATLESLLRFLEWIPLDYIFE---TNII 235 (1053)
T ss_pred HHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHhhCchhHHHH---HHHH
Confidence 8877764 222221 13577888888888875 5677888899999999888877544322 3455
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHHh--HH-------hhHH---------------------------------hHH
Q 039062 222 RVVCEATQSAELKIRQAAFECLVSISSTY--YE-------KLAP---------------------------------YMQ 259 (871)
Q Consensus 222 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--~~-------~~~~---------------------------------~~~ 259 (871)
+.+.+.+. ..++.|..++.||..++.-. |. .+.- ++.
T Consensus 236 eLv~~~f~-s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq 314 (1053)
T COG5101 236 ELVLEHFN-SMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQ 314 (1053)
T ss_pred HHHHHHhc-cCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHH
Confidence 55555443 24556667777777666431 00 0000 001
Q ss_pred HHHHHHH-------HHh--------------------hCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCC--------CC
Q 039062 260 DIYSITA-------KAV--------------------REDEEPVALQAIEFWSSICDEEIDILEEYGSDF--------TG 304 (871)
Q Consensus 260 ~l~~~~~-------~~~--------------------~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~--------~~ 304 (871)
.+..++. +.+ .-.+.++...|+++|..++-.-..-.+...+.. .|
T Consensus 315 ~LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~ 394 (1053)
T COG5101 315 KLAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVG 394 (1053)
T ss_pred HHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhcccc
Confidence 1111110 011 112345677788888887654221111111100 01
Q ss_pred ----------CCCCc-hhhhHHhhhhhhHHHHHHHHhcccC-----Cccc--------ccccccHhHHHHHHHHHHHHHc
Q 039062 305 ----------NSDIP-CFYFIKQALPALVPLLLEILLKQEE-----DQDQ--------EEGAWNIAMAGGTCLGLVARTV 360 (871)
Q Consensus 305 ----------~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~-----d~~~--------~~~~~~~r~~a~~~l~~l~~~~ 360 (871)
.+..| .++.....++.+.-.+.+.|...+| +++. |-+.....+.-..+|-.+....
T Consensus 395 s~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL~ 474 (1053)
T COG5101 395 SQAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLI 474 (1053)
T ss_pred chhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhhh
Confidence 11122 2334455666667777777776543 1111 1122344555566776666554
Q ss_pred CCCcccchHHHHHhhhcCC--ChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHc----cCCCcHHHHHHHHHHH
Q 039062 361 GDDIVPLVIPFIEENIAKP--DWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSAL----TKDPNNHVKDTTAWTL 434 (871)
Q Consensus 361 ~~~~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l----~~d~~~~vr~~a~~~l 434 (871)
-...-..+...+...+.+. +|..-..-++++|+++.......-+.++-.++..++... .+|....|....+..+
T Consensus 475 v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvv 554 (1053)
T COG5101 475 VDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVV 554 (1053)
T ss_pred hhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeee
Confidence 4443344555555555554 577778889999999987753333345555665555433 2677777777788888
Q ss_pred HHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCC---CCCCCcchHHHHHHHHHH
Q 039062 435 GRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVG---PSSPLTPFFQEIVQSLLT 510 (871)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~---~~~~l~~~~~~il~~l~~ 510 (871)
|++-..+. .+..++..++..|.+.+.+ +..|+.-||..+..+++.|.-+. ....-.|++..|+..+-+
T Consensus 555 GQYpRFLk--------ahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~k 626 (1053)
T COG5101 555 GQYPRFLK--------AHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPK 626 (1053)
T ss_pred ccchHHHH--------HHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhh
Confidence 88877774 4678999999999999985 88999999999999988765331 234456888888888877
Q ss_pred hhccCChhhhhHHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHH
Q 039062 511 VTHREDAGESRLRTAAYETLNEVVRSSTD--ETAPMVLQLVPVIMMELH 557 (871)
Q Consensus 511 ~l~~~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~ll~~l~~~l~ 557 (871)
...+-. +.-....++|++.+++..|. .....+..++......|.
T Consensus 627 tT~dL~---pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~ 672 (1053)
T COG5101 627 TTGDLE---PQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWL 672 (1053)
T ss_pred hcccCC---hHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHH
Confidence 766543 34455788999999988874 233344455554444444
No 21
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.90 E-value=1.5e-18 Score=204.88 Aligned_cols=766 Identities=14% Similarity=0.114 Sum_probs=469.3
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCh---------HHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchh
Q 039062 4 EVTQVLLNAQSI--DGTVRKHAEESLKQFQEQNL---------PSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQ 72 (871)
Q Consensus 4 ~l~~~l~~~~s~--~~~~r~~A~~~L~~~~~~~~---------~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~ 72 (871)
.+..+++.+.++ +++.|++|...|..+.+.+. .+.+..|...|.+. +..+|..|+-.|.+.-.+ ..
T Consensus 14 ~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg--~~~vk~nAaaaL~nLS~~-e~ 90 (2102)
T PLN03200 14 SVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG--TLGAKVNAAAVLGVLCKE-ED 90 (2102)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCC--CHHHHHHHHHHHHHHhcC-HH
Confidence 577888888876 78999999999988766542 34667788888753 578888888666664321 10
Q ss_pred hhHHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCc------hHHHHHHHHhhcCCC--
Q 039062 73 HRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQW------PELIVSLLSNVHQLP-- 144 (871)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~------~~ll~~L~~~l~~~~-- 144 (871)
+... + ......+.|+.+|.+.+...|..++.+|..++........| ++.+|.|+..+.+++
T Consensus 91 -----nk~~---I---v~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~ 159 (2102)
T PLN03200 91 -----LRVK---V---LLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQ 159 (2102)
T ss_pred -----HHHH---H---HHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchh
Confidence 0000 0 01334456788898888999999999999998652101122 567888888888763
Q ss_pred -hHHHHHHHHHHHHHhhccCCCccchh-hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHH
Q 039062 145 -AHVKQATLETLGYLCEEVSPDVVEQD-HVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMR 222 (871)
Q Consensus 145 -~~~r~~al~~l~~l~~~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~ 222 (871)
..++..+..+|..++..- ...- .. .-...++.+...+. ++++.++..|..++..++...+.. .........++
T Consensus 160 d~~L~~~Av~AL~nLs~~~-en~~-~~IIeaGaVp~LV~LLs--S~d~~lQ~eAa~aLa~Lass~ee~-~~aVIeaGaVP 234 (2102)
T PLN03200 160 DKVVEGLLTGALRNLCGST-DGFW-SATLEAGGVDILVKLLS--SGNSDAQANAASLLARLMMAFESS-ISKVLDAGAVK 234 (2102)
T ss_pred hHHHHHHHHHHHHHHhcCc-cchH-HHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCChHH-HHHHHHCCCHH
Confidence 234566678888888754 2211 11 12346778888888 678899999999888766432211 00001123578
Q ss_pred HHHHhhcc-CcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhCCC---------hhHHHHHHHHHHHHHHHH
Q 039062 223 VVCEATQS-AELKIRQAAFECLVSISSTYYEKLAPYMQ-DIYSITAKAVREDE---------EPVALQAIEFWSSICDEE 291 (871)
Q Consensus 223 ~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~---------~~~~~~a~~~~~~l~~~~ 291 (871)
.+.+++.+ .++.+|..|..+|..++...++.-...+. +-++.++..+..+. ...+..|+..+..+|...
T Consensus 235 ~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~ 314 (2102)
T PLN03200 235 QLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM 314 (2102)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc
Confidence 88888864 56799999999999999753332221111 23444444444332 345778888888887642
Q ss_pred HhhhhhhcCCC-CCCCCCchhhhHH--hhhh-------------------hhHHHHHHHHhcccCCcccccccccHhHHH
Q 039062 292 IDILEEYGSDF-TGNSDIPCFYFIK--QALP-------------------ALVPLLLEILLKQEEDQDQEEGAWNIAMAG 349 (871)
Q Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~-------------------~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a 349 (871)
..+..-..... ..+.. ..... ..++ .+.+.|.+.+...+.. .+...+
T Consensus 315 ~~ll~~L~~ll~s~rd~---~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~--------~vqe~V 383 (2102)
T PLN03200 315 SALILYLGELSESPRSP---APIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTK--------LVQERI 383 (2102)
T ss_pred hhhHHHHHHhhcccchH---HHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCc--------hhHHHH
Confidence 11110000000 00000 00000 0000 0112222222211100 011112
Q ss_pred HHHHHHHHHHcCCCcc------cchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH-HHHHHHHHHHccCCC
Q 039062 350 GTCLGLVARTVGDDIV------PLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV-NVALSFMLSALTKDP 422 (871)
Q Consensus 350 ~~~l~~l~~~~~~~~~------~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l-~~i~~~l~~~l~~d~ 422 (871)
..+| ...+|...+ ....+.+...+...+-..+..++.++..++.+. .+...... ...+|.++..| .++
T Consensus 384 ~eAL---asl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL-~s~ 458 (2102)
T PLN03200 384 IEAL---ASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLL-GLS 458 (2102)
T ss_pred HHHH---HHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHH-cCC
Confidence 2222 111111100 112233344455556789999999999999874 23333222 34689999999 999
Q ss_pred cHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchH
Q 039062 423 NNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFF 501 (871)
Q Consensus 423 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~ 501 (871)
++.+|..++++++.++..... ....-.-...+|.|++.|.. ++++++.|+|+|.+++.+ .+.....+
T Consensus 459 s~~iQ~~A~~~L~nLa~~nde------nr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~------~~qir~iV 526 (2102)
T PLN03200 459 SEQQQEYAVALLAILTDEVDE------SKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH------SEDIRACV 526 (2102)
T ss_pred CHHHHHHHHHHHHHHHcCCHH------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC------cHHHHHHH
Confidence 999999999999999864321 11111123578899998875 689999999999999752 12222223
Q ss_pred H--HHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHH
Q 039062 502 Q--EIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGL 579 (871)
Q Consensus 502 ~--~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 579 (871)
. ..++.|+..+++. +.+.+..+..+|..++..... ..++.++..+.. +++ ..+..
T Consensus 527 ~~aGAIppLV~LL~sg---d~~~q~~Aa~AL~nLi~~~d~-------~~I~~Lv~LLls---------dd~----~~~~~ 583 (2102)
T PLN03200 527 ESAGAVPALLWLLKNG---GPKGQEIAAKTLTKLVRTADA-------ATISQLTALLLG---------DLP----ESKVH 583 (2102)
T ss_pred HHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHhccch-------hHHHHHHHHhcC---------CCh----hHHHH
Confidence 1 3566677777766 457889999999999876443 233455555432 222 23444
Q ss_pred HHHHHHHHHHHhCCCCCchhhhhhh--HHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhh-hHhHHHHHHhh
Q 039062 580 LCGCLQVIIQKLGSSEPTKYVFMQY--ADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKY-MPDFYKYLEMG 656 (871)
Q Consensus 580 ~~~~l~~l~~~~~~~~~~~~~~~~~--~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-l~~i~~~l~~~ 656 (871)
++.++..+.......+ ..... ....++.+..++++++...++.|..++..++....+..... ....+|.++..
T Consensus 584 aL~vLgnIlsl~~~~d----~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~L 659 (2102)
T PLN03200 584 VLDVLGHVLSVASLED----LVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKL 659 (2102)
T ss_pred HHHHHHHHHhhcchhH----HHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH
Confidence 6677777665433321 00000 13568899999999999999999999999987554433222 24578888888
Q ss_pred hcCCcchhHHHHHHHHHHHHHHHhhhc-ccccH-HHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHH
Q 039062 657 LQNFEEYQVCAVTVGVVGDICRALEEK-ILPYC-DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYA 734 (871)
Q Consensus 657 l~~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~-~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i 734 (871)
+++.++ +++..+.++|+.+.....+. ...++ ...++.|++.++++ +.+++..++.+++.++......-.-.-...
T Consensus 660 Lss~~~-~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~--d~~v~e~Al~ALanLl~~~e~~~ei~~~~~ 736 (2102)
T PLN03200 660 LTNNTE-AVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS--SIEVAEQAVCALANLLSDPEVAAEALAEDI 736 (2102)
T ss_pred HhcCCh-HHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC--ChHHHHHHHHHHHHHHcCchHHHHHHhcCc
Confidence 876644 89999999999998744422 11222 35788899999887 678999999999999886543211122456
Q ss_pred HHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchH--HHHHHHHHHhcCCCCCHHHHH
Q 039062 735 MPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAP--HILQFLDSMYMEKDMDELVMK 812 (871)
Q Consensus 735 ~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~i~~~l~~~~~~~~~~~~~r~ 812 (871)
++.+.+.++.. ....|+.+..++..++.....+ ..+..|+. ..+..+..+++..+.+.....
T Consensus 737 I~~Lv~lLr~G-------------~~~~k~~Aa~AL~~L~~~~~~~---~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~ 800 (2102)
T PLN03200 737 ILPLTRVLREG-------------TLEGKRNAARALAQLLKHFPVD---DVLKDSVQCRGTVLALVDLLNSTDLDSSATS 800 (2102)
T ss_pred HHHHHHHHHhC-------------ChHHHHHHHHHHHHHHhCCChh---HHHHHHHHHhCcHHHHHHHHhcCCcchhhHH
Confidence 78888888765 2567889999998888764321 22433433 356677777776554444455
Q ss_pred HHHHHHHHHHhHhcc-ccc--cc-----ccchHHHHHHHHHHHcCCChhhHHHHHHHHHHH
Q 039062 813 TAIGLLGDLADTLGS-NAG--SL-----IQQSLTSKDFLNECLSSKDHMIKESAEWARLAI 865 (871)
Q Consensus 813 ~a~~~l~~i~~~~~~-~~~--~~-----l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 865 (871)
.++..++.+++.-++ ++. || .|.. +.++..++ ..+.+.+.+.|+..+-++
T Consensus 801 ~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~--l~~l~~~l-~~~~p~~~~kai~il~~~ 858 (2102)
T PLN03200 801 EALEALALLARTKGGANFSHPPWAVLAEVPSS--LEPLVRCL-AEGHPLVQDKAIEILSRL 858 (2102)
T ss_pred HHHHHHHHHHhhcccCCCCCCchhhHHhccCc--hHHHHHHH-HcCChHHHHHHHHHHHHH
Confidence 689999999986322 221 22 2232 55666777 568999999999988776
No 22
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.89 E-value=9.2e-19 Score=179.68 Aligned_cols=572 Identities=16% Similarity=0.206 Sum_probs=398.3
Q ss_pred CCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHH
Q 039062 187 EMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITA 266 (871)
Q Consensus 187 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~ 266 (871)
+..+..|..+++.+..-.. .|-.....+.+++.+....- +.+-|...++.+..++....+...||+.+++-.+-
T Consensus 374 NG~ppmRk~~LR~ltdkar----~~ga~~lfnqiLpllMs~tL--eDqerhllVkvidriLyklDdlvrpYVhkILvVie 447 (1172)
T KOG0213|consen 374 NGTPPMRKSALRILTDKAR----NFGAGPLFNQILPLLMSPTL--EDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIE 447 (1172)
T ss_pred CCCchhHHHHHHHHHHHHH----hhccHHHHHHHHHHHcCccc--cchhhhhHHHHHHHHHHhhcccchhceeeeEEEee
Confidence 5778899999998877332 12212223555555554432 34567788888888888888888888887766555
Q ss_pred HHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHh
Q 039062 267 KAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIA 346 (871)
Q Consensus 267 ~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r 346 (871)
..+-+++...+...-+.++.++... . +.. .+.. | .+|-+..|+ -+|
T Consensus 448 pllided~yar~egreIisnLakaa--------------------G-la~----mist----m--rpDidn~de---YVR 493 (1172)
T KOG0213|consen 448 PLLIDEDYYARVEGREIISNLAKAA--------------------G-LAT----MIST----M--RPDIDNKDE---YVR 493 (1172)
T ss_pred cceecchHHHhhchHHHHHHHHHHh--------------------h-hHH----HHHh----h--cCCcccccH---HHH
Confidence 5666777777777777777665531 0 111 1111 1 111111111 578
Q ss_pred HHHHHHHHHHHHHcCCCcccchHHHHHhhhcCC-ChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHH
Q 039062 347 MAGGTCLGLVARTVGDDIVPLVIPFIEENIAKP-DWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNH 425 (871)
Q Consensus 347 ~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~ 425 (871)
...+.+...++..+| +|.++||++....|. +|+.|+.++.+...|+.-.+ -..-+|+..++..+-.++ .|.+..
T Consensus 494 nttarafavvasalg---ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~G-csvlphl~~lv~ii~~gl-~De~qk 568 (1172)
T KOG0213|consen 494 NTTARAFAVVASALG---IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSG-CSVLPHLKPLVKIIEHGL-KDEQQK 568 (1172)
T ss_pred HHHHHHHHHHHHHhC---cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhc-chhhhhhHHHHHHHHHhh-cccchh
Confidence 878888888888887 478899999888875 99999999999999987654 556789999999999999 999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHH
Q 039062 426 VKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDT-PNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEI 504 (871)
Q Consensus 426 vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~i 504 (871)
||..+..+++.+++... ...-..++.++..|.+.+..+ .++-.+-..|++.++..+. .+.-.-|-..+
T Consensus 569 VR~itAlalsalaeaa~-------Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd----~eya~yyTrev 637 (1172)
T KOG0213|consen 569 VRTITALALSALAEAAT-------PYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMD----AEYASYYTREV 637 (1172)
T ss_pred hhhHHHHHHHHHHHhcC-------CcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhcccccc----HHHHHHhHHHH
Confidence 99999999999998764 345667888999998888753 3455555666666654332 11222244577
Q ss_pred HHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-HHHhhhccCCChhhHHHHHHHHHHHHHH
Q 039062 505 VQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMME-LHKTLEGQKLSSDEREKQGELQGLLCGC 583 (871)
Q Consensus 505 l~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (871)
+-.+..-+.++| ...+...+..+..++...+..-.=....++|.++.. |.... .-|+-+ -..+...
T Consensus 638 mlil~rEf~sPD---eemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrm------A~drr~----ykqlv~t 704 (1172)
T KOG0213|consen 638 MLILIREFGSPD---EEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRM------ALDRRN----YKQLVDT 704 (1172)
T ss_pred HHHHHHhhCCCh---HHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhh------hccccc----hhhHHHH
Confidence 777888888875 467778888888888877743222334556665544 43322 122211 1235566
Q ss_pred HHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhh-hhhhh-hHhHHHHHHhhhcCCc
Q 039062 584 LQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGL-DFAKY-MPDFYKYLEMGLQNFE 661 (871)
Q Consensus 584 l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~-l~~i~~~l~~~l~~~~ 661 (871)
-..++..+|.. +++..++.-+.+.....|.-+..++..++..+|. ++-.- -..++..++-.++..+
T Consensus 705 tv~ia~KvG~~------------~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt 772 (1172)
T KOG0213|consen 705 TVEIAAKVGSD------------PIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT 772 (1172)
T ss_pred HHHHHHHhCch------------HHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc
Confidence 77788888854 5666777777777777888899999999988874 34332 2456666666665332
Q ss_pred chhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccC----hHHhHHHHHHH
Q 039062 662 EYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN----FEKYLMYAMPM 737 (871)
Q Consensus 662 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~----~~~~~~~i~~~ 737 (871)
. +. ..-+..++.++..++..++||+++|...++..|++. +..+|..++..++.++..+..- +..|+.. .
T Consensus 773 t-~d-~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnk--sa~vRqqaadlis~la~Vlktc~ee~~m~~lGv---v 845 (1172)
T KOG0213|consen 773 T-ED-SVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNK--SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV---V 845 (1172)
T ss_pred c-ch-hhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH---H
Confidence 2 11 135567788888999999999999999999999988 7899999999999999776532 3344443 2
Q ss_pred HHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039062 738 LQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGL 817 (871)
Q Consensus 738 l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~ 817 (871)
|.+.+... | .++-..++.++.+|...++ ...+.|=+..++|.+..++++ .++.+...++.+
T Consensus 846 LyEylgee------------y-pEvLgsILgAikaI~nvig----m~km~pPi~dllPrltPILkn--rheKVqen~IdL 906 (1172)
T KOG0213|consen 846 LYEYLGEE------------Y-PEVLGSILGAIKAIVNVIG----MTKMTPPIKDLLPRLTPILKN--RHEKVQENCIDL 906 (1172)
T ss_pred HHHhcCcc------------c-HHHHHHHHHHHHHHHHhcc----ccccCCChhhhcccchHhhhh--hHHHHHHHHHHH
Confidence 33444321 2 3455567778888877764 234555577899999999986 689999999999
Q ss_pred HHHHHhHhcccccccccchHHHH---HHHHHHHcCCChhhHHHHHHHHHHHHHHhc
Q 039062 818 LGDLADTLGSNAGSLIQQSLTSK---DFLNECLSSKDHMIKESAEWARLAINKAIS 870 (871)
Q Consensus 818 l~~i~~~~~~~~~~~l~~~~~v~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (871)
+|.|+...+. |.+--+|+. .+++.+. +.+..+|.+|...+|-|.++||
T Consensus 907 vg~IadrgpE----~v~aREWMRIcfeLlelLk-ahkK~iRRaa~nTfG~IakaIG 957 (1172)
T KOG0213|consen 907 VGTIADRGPE----YVSAREWMRICFELLELLK-AHKKEIRRAAVNTFGYIAKAIG 957 (1172)
T ss_pred HHHHHhcCcc----cCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHhcC
Confidence 9999997655 445445554 6677776 5789999999999999999997
No 23
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.86 E-value=6.6e-17 Score=171.51 Aligned_cols=679 Identities=14% Similarity=0.116 Sum_probs=363.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccC
Q 039062 5 VTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (871)
Q Consensus 5 l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~ 84 (871)
.+..+...+|+++..++.||+.|+++..+ ++|...|.++..+...+.++|+.|++.|||.|+++|+..+ -..
T Consensus 6 vv~~~~~aqs~~p~s~k~AE~~Lrqwe~q--~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~------~~~ 77 (947)
T COG5657 6 VVKQLDLAQSPDPPSVKCAEERLRQWEKQ--HGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREEN------GNS 77 (947)
T ss_pred HHHHHHhhcCCCCchHhhHHHHHHhhhcc--ccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhc------ccC
Confidence 45577889999999999999999999999 8999999999999888999999999999999999998532 235
Q ss_pred CCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCC
Q 039062 85 LDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSP 164 (871)
Q Consensus 85 ~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~ 164 (871)
+.++....||..++.++.+.+..+..+.|.+++.||+.++| ..||.+++.|...+++.|...-.+.+.++..+.+.+ .
T Consensus 78 i~p~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfP-deWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~-r 155 (947)
T COG5657 78 ILPDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFP-DEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRL-R 155 (947)
T ss_pred CCCccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCc-ccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHH-h
Confidence 66777779999999999998888888999999999999999 899999999999999977777778888888888877 3
Q ss_pred Ccc-chhhH----HHHHHHHHhhhcCCCCCHHHH-----------HHHHHHHHHhhhcch---hcccChhhHHHHHHHHH
Q 039062 165 DVV-EQDHV----NKILTAVVQGMNASEMNNDVR-----------LAATRALYNALSFAQ---ANFSNDMERDYIMRVVC 225 (871)
Q Consensus 165 ~~~-~~~~~----~~i~~~l~~~l~~~~~~~~vr-----------~~al~~l~~~~~~~~---~~~~~~~~~~~i~~~l~ 225 (871)
..+ +...+ +.+.+.+.+.+.+.-+.+..+ ..+++.+..+....- ..|. +...+..+....
T Consensus 156 ~l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFf-Ed~l~~~m~~F~ 234 (947)
T COG5657 156 RLFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFF-EDNLDKFMEHFC 234 (947)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhHHH-HHHHHHHHHHHH
Confidence 222 12222 222222333332211222221 123333333332211 1111 112234455554
Q ss_pred HhhccCcHHHHH-------------HHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCC-----hhHHHHHHHHHHHH
Q 039062 226 EATQSAELKIRQ-------------AAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDE-----EPVALQAIEFWSSI 287 (871)
Q Consensus 226 ~~l~~~~~~~~~-------------~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~a~~~~~~l 287 (871)
..+.-..+..+. ..+..+.-+...+|..+.+++-..++.+|..+++-. +-+...++.++...
T Consensus 235 klls~~~~~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~v 314 (947)
T COG5657 235 KLLSYSNPVLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLINV 314 (947)
T ss_pred HHHhhcchhhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHHh
Confidence 444422333333 345555555566888888888888888888876521 22444455555444
Q ss_pred HHHHHhhhhhhcCCCCCCCCCc-hhhhHHhhhhhhHHHHHH-HHhcccCCcc--------------cccccccHhHHHHH
Q 039062 288 CDEEIDILEEYGSDFTGNSDIP-CFYFIKQALPALVPLLLE-ILLKQEEDQD--------------QEEGAWNIAMAGGT 351 (871)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~-~l~~~~~d~~--------------~~~~~~~~r~~a~~ 351 (871)
.+... +++. + ..+.......+++..+.. .+.-.++|-+ ..+-+.++|.++.+
T Consensus 315 ~k~~i---rk~~---------e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dye~~vr~~~~~ 382 (947)
T COG5657 315 IKYPI---RKTA---------EVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDYEVNVRPCIEN 382 (947)
T ss_pred hcccc---HHHH---------HHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccchhhhhHHHHH
Confidence 33110 0000 0 001112233333333321 1111222211 11123567788888
Q ss_pred HHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcC-CChhhhhH---HHHHHHHHHHHHccCCC----c
Q 039062 352 CLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEG-PSPDKLLH---IVNVALSFMLSALTKDP----N 423 (871)
Q Consensus 352 ~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~-~~~~~~~~---~l~~i~~~l~~~l~~d~----~ 423 (871)
.++.+...+|+-+.+.+...+.+..+.+ +....+......++.. .+.+.+.. ...-.-......+ .+| +
T Consensus 383 ~l~~~f~~~~~i~~~~~~~~ie~~~t~P--~~~d~~~~~~a~~a~~g~g~~av~~~~~~v~~~~~~~~pd~-~s~~~~~~ 459 (947)
T COG5657 383 ELKDLFDVFGRIAVGHELTVIESEATTP--NILDEARQLFAAYASFGLGVEAVNRMVDFVKFLGSIIYPDL-LSPNEIIH 459 (947)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccc-cCcccCce
Confidence 8888888888656677777777776666 3444444444444332 11122111 1111112222222 232 3
Q ss_pred HHHH-HHHHHHHHHHhhhhccCCCCCCccchhhH-HHHHHHHHHhccCC---hHHHHHHHHHHHHHHhhcccCCCCCCCc
Q 039062 424 NHVK-DTTAWTLGRIFEFLHGSTIGTPIITQANC-QQIITVLLQSMKDT---PNVAEKACGALYFLAQGYEDVGPSSPLT 498 (871)
Q Consensus 424 ~~vr-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~~il~~l~~~l~d~---~~v~~~a~~~l~~l~~~~~~~~~~~~l~ 498 (871)
.+++ ..+...+..-.....+. .....++ .+.+-......-|- -.++.+....+.... .. +....
T Consensus 460 ~ri~~~~i~~i~~~r~~l~~~~-----~~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n----~~--~~~~~ 528 (947)
T COG5657 460 LRILRSRIAYILTFRNQLDSSE-----LSESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWN----FS--VCSKI 528 (947)
T ss_pred eEEehhccchheechhhhhhhh-----hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcc----cc--ccccc
Confidence 3332 22211111110000000 0000000 01111111111110 123444333333221 11 22444
Q ss_pred chHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHH
Q 039062 499 PFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQG 578 (871)
Q Consensus 499 ~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 578 (871)
+..++++-.+++.+.... .-.-|+..+.+++.++...++...|....+++.+.+.+.... .++.. +.+..
T Consensus 529 ~~lenl~~lvl~~~as~~--~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~-------knps~-p~~~h 598 (947)
T COG5657 529 GLLENLILLVLSLMASPS--SLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINA-------KNPSN-PQFAH 598 (947)
T ss_pred ccHHHHHHHHHHhcCCcc--hhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHc-------cCCcc-HHHHH
Confidence 566777777777776655 335688999999999999999999988999999988887642 11211 22333
Q ss_pred HHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcch-hhhHHHHHHHHHHHhhh---hhhhh-hHhHHHHH
Q 039062 579 LLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATV-HEEAMLAIGALAYAAGL---DFAKY-MPDFYKYL 653 (871)
Q Consensus 579 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~-~~~a~~~l~~l~~~~~~---~~~~~-l~~i~~~l 653 (871)
...+.+++++..... ..+..++.+...+......+ -+.+.+.++.+...... .+..+ +|.++..+
T Consensus 599 ~~fe~I~al~~~~~~----------~~~~~ip~l~~~l~p~~~~l~~ed~~El~~~~lq~~s~l~e~f~~~~lp~v~~~l 668 (947)
T COG5657 599 YTFEDIGALVFLKSG----------MCEITIPTLVLALVPEFPVLLSEDATELWSYVLQLLSILPEHFSGDVLPSVVKIL 668 (947)
T ss_pred HHHHHHHHHHHhhhc----------ccccchHHHHHhhCccchhhhhhhHHHHHHHHHHHHhhcchhhcCCcCchHHHHH
Confidence 455555555544332 22333444444444332333 36778888777665543 33322 34444333
Q ss_pred HhhhcCCcchhHHHHHHHHH---HHHHHHhhhcccc-cHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhc--cCh
Q 039062 654 EMGLQNFEEYQVCAVTVGVV---GDICRALEEKILP-YCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG--ENF 727 (871)
Q Consensus 654 ~~~l~~~~~~~v~~~a~~~l---~~l~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~--~~~ 727 (871)
.+...+++-++.+..-.... .......+.-+.. .+-.++..+...+.++ .-+..+...+....... .-.
T Consensus 669 ~q~~~~t~ll~~~~~I~~~~~Ll~~~~~~~~~if~~s~~~~vL~i~~~ll~~e-----~~~~~~f~~~~~v~~l~~~~i~ 743 (947)
T COG5657 669 RQPSLATELLPTKLEILKSYRLLDNPILTTGYIFKSSGFQPVLGILQYLLGSE-----PHDALCFLNLTVVETLYLENIY 743 (947)
T ss_pred hcccCchHHHHHHHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHhcc-----hHHHHHHhhHHHHHHhHHHHHH
Confidence 33332333333332222211 1111111111111 1123334444444433 22333333333333322 224
Q ss_pred HHhHHHHHHHHHHHHhhc
Q 039062 728 EKYLMYAMPMLQSAADLS 745 (871)
Q Consensus 728 ~~~~~~i~~~l~~~l~~~ 745 (871)
.+|+..+.-.+.+.+.+.
T Consensus 744 ~~~v~~i~~lll~rl~ns 761 (947)
T COG5657 744 EPYVNLIFVLLLSRLKNS 761 (947)
T ss_pred hhcHHHHHHHHHHHhhcc
Confidence 578887777777666654
No 24
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=2.5e-18 Score=190.60 Aligned_cols=554 Identities=17% Similarity=0.209 Sum_probs=371.8
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHh--hHHhHHHHHHHHHHHhhCCChhH---HHHHHHHHHHHHHHHH
Q 039062 218 DYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEK--LAPYMQDIYSITAKAVREDEEPV---ALQAIEFWSSICDEEI 292 (871)
Q Consensus 218 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~---~~~a~~~~~~l~~~~~ 292 (871)
..+...+...+.++++..|++++-.|..++.+.+.. ..-+.+++...+...+.+.++-+ ....+...+.+++.
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~-- 894 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDS-- 894 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCc--
Confidence 346777788888999999999999999999876532 33344567776777777766533 33334444444332
Q ss_pred hhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcc-------cCCccc-cccc-----ccHhHHHHHHHHHHHHH
Q 039062 293 DILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQ-------EEDQDQ-EEGA-----WNIAMAGGTCLGLVART 359 (871)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~d~~~-~~~~-----~~~r~~a~~~l~~l~~~ 359 (871)
...+.+ +..|++.++.. .+|.+- +++. ..-.....+-|-.++.-
T Consensus 895 -------------------~~k~~L----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASd 951 (1702)
T KOG0915|consen 895 -------------------SLKKSL----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASD 951 (1702)
T ss_pred -------------------hhHHHH----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhh
Confidence 122232 33333333211 111110 0000 00112234556667776
Q ss_pred cCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhh
Q 039062 360 VGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFE 439 (871)
Q Consensus 360 ~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~ 439 (871)
+|+. ..+..|+.-.-.+..|..|.+|.+.|++|++..+ +.+.||++.++|.+..+- -||++.|+.+-...-+.+..
T Consensus 952 l~qP--dLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~-~kl~p~l~kLIPrLyRY~-yDP~~~Vq~aM~sIW~~Li~ 1027 (1702)
T KOG0915|consen 952 LGQP--DLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAG-EKLEPYLKKLIPRLYRYQ-YDPDKKVQDAMTSIWNALIT 1027 (1702)
T ss_pred cCCh--HHHHHHHHHhhhhchhhcccchhhchHHHHHHHH-HhhhhHHHHhhHHHhhhc-cCCcHHHHHHHHHHHHHhcc
Confidence 6653 2345666555566889999999999999999874 899999999999999999 99999999877666556554
Q ss_pred hhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChh
Q 039062 440 FLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAG 518 (871)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~ 518 (871)
.-. .....|+..++..|+..+.+ .||||+++|.||..+.++- +.+.+...+++++..+.....+-
T Consensus 1028 D~k-------~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~----~~~~~~e~lpelw~~~fRvmDDI--- 1093 (1702)
T KOG0915|consen 1028 DSK-------KVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGR----PFDQVKEKLPELWEAAFRVMDDI--- 1093 (1702)
T ss_pred ChH-------HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCC----ChHHHHHHHHHHHHHHHHHHHHH---
Confidence 432 34578999999999999997 8999999999999998752 24566667777777777776554
Q ss_pred hhhHHHHHHHHHHHHHHhc---C-----CCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 039062 519 ESRLRTAAYETLNEVVRSS---T-----DETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQK 590 (871)
Q Consensus 519 ~~~vr~~a~~~l~~l~~~~---~-----~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 590 (871)
...+|+++-.+...+.+.+ . .+-.+.+..++|.++.- . . ....+++|...+.++..+++.
T Consensus 1094 KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~---g----i-----ms~v~evr~~si~tl~dl~Ks 1161 (1702)
T KOG0915|consen 1094 KESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDE---G----I-----MSKVNEVRRFSIGTLMDLAKS 1161 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhcc---C----c-----ccchHHHHHHHHHHHHHHHHh
Confidence 4478877655555544432 2 34567888888888642 1 0 112346788899999999999
Q ss_pred hCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhh-----------h--------------HHHHHHHHHHHhhhhhhhh
Q 039062 591 LGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHE-----------E--------------AMLAIGALAYAAGLDFAKY 645 (871)
Q Consensus 591 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~-----------~--------------a~~~l~~l~~~~~~~~~~~ 645 (871)
.|.. +.|+++.+++.++..+..-++.+-. + .++++..++..... ..
T Consensus 1162 sg~~------lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~---~v 1232 (1702)
T KOG0915|consen 1162 SGKE------LKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDI---SV 1232 (1702)
T ss_pred chhh------hcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhH---HH
Confidence 9987 9999999999999988764332111 1 12334444433332 23
Q ss_pred hHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhcc
Q 039062 646 MPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGE 725 (871)
Q Consensus 646 l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~ 725 (871)
+..++|.+.+.++..-....|..+...+..++..++.++.||.+.++..++..+++. +..++....+++|.++....+
T Consensus 1233 Leelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dR--Nesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1233 LEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDR--NESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred HHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccc--cHHHHHHHHHHHHHHHhcCCh
Confidence 456788888777765555667788889999999999999999999999999999986 788999999999999988766
Q ss_pred -ChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCC
Q 039062 726 -NFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEK 804 (871)
Q Consensus 726 -~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 804 (871)
++..+++.++-.+. ... ...+..++.++..|... ..+.+..|...|+|.+.--..+.
T Consensus 1311 dq~qKLie~~l~~~l---~k~--------------es~~siscatis~Ian~-----s~e~Lkn~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1311 DQMQKLIETLLADLL---GKD--------------ESLKSISCATISNIANY-----SQEMLKNYASAILPLIFLAMHEE 1368 (1702)
T ss_pred HHHHHHHHHHHHHHh---ccC--------------CCccchhHHHHHHHHHh-----hHHHHHhhHHHHHHHHHHHHhHH
Confidence 57777776654443 221 12234456666654433 34568889999999875443321
Q ss_pred CCCHHHHHHHHHHHHHHHhHh-cccc--cc-cccchHHHHHHHHHHHcCCChhhHHHHHHHHHHHHH
Q 039062 805 DMDELVMKTAIGLLGDLADTL-GSNA--GS-LIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINK 867 (871)
Q Consensus 805 ~~~~~~r~~a~~~l~~i~~~~-~~~~--~~-~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 867 (871)
-+.--.++.++-..+ +.+. .| |++. .+..++....++..+.+|..+..++..+..
T Consensus 1369 ------~Ka~q~Lw~dvW~e~vsggagtvrl~~~e--iLn~iceni~nn~~w~lr~q~Akai~~~a~ 1427 (1702)
T KOG0915|consen 1369 ------EKANQELWNDVWAELVSGGAGTVRLYLLE--ILNLICENITNNESWKLRKQAAKAIRVIAE 1427 (1702)
T ss_pred ------HHHHHHHHHHHHHHhCCCCcchhhhhHHH--HHHHHHHHhccchHHHHHHHHHHHHHHHcc
Confidence 223344455544433 2222 24 6665 477788888877779999999888887653
No 25
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.85 E-value=4.1e-17 Score=193.01 Aligned_cols=723 Identities=14% Similarity=0.080 Sum_probs=443.1
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHh
Q 039062 42 LSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAG 121 (871)
Q Consensus 42 l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~ 121 (871)
+.+-+.+....++.|..|+.-|+.+.+.+.... .. + ......-+.|+..|.+++..++..++.++..++.
T Consensus 18 Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR-----~~---I--a~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~ 87 (2102)
T PLN03200 18 CIEQLRAKSSSPQEKELTTARLLELAKTREEAR-----KA---I--GSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCK 87 (2102)
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHHHhcChHHH-----HH---H--HHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 333444332245667777767766665432110 00 0 0012235678888988889999999988888876
Q ss_pred hhcCCC--CchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccch--hhHHHHHHHHHhhhcCCC-CCHHHHHHH
Q 039062 122 IELPQK--QWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQ--DHVNKILTAVVQGMNASE-MNNDVRLAA 196 (871)
Q Consensus 122 ~~~~~~--~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~--~~~~~i~~~l~~~l~~~~-~~~~vr~~a 196 (871)
.+-... .-...++-|+.++.+++...|+.|..+|..+......+.... -.....++.++..+.+.+ .+..++..+
T Consensus 88 ~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~A 167 (2102)
T PLN03200 88 EEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLL 167 (2102)
T ss_pred CHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHH
Confidence 641100 115677888888888899999999999999876430011100 112556777888887422 133467777
Q ss_pred HHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhC-CCh
Q 039062 197 TRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQ-DIYSITAKAVRE-DEE 274 (871)
Q Consensus 197 l~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~-~~~ 274 (871)
..+|.++....+... ........++.+...+.++++..+..|+.++..++...++.....+. ..++.++..+.+ .+.
T Consensus 168 v~AL~nLs~~~en~~-~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~ 246 (2102)
T PLN03200 168 TGALRNLCGSTDGFW-SATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEV 246 (2102)
T ss_pred HHHHHHHhcCccchH-HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCCh
Confidence 888888765432111 00011235778888888899999999999998888665443222222 457777778865 456
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHH
Q 039062 275 PVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLG 354 (871)
Q Consensus 275 ~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~ 354 (871)
.++..|...+..++....+. ...+.. ..-+|.|++.+.....+-..++..-..+..|..+|.
T Consensus 247 ~VRE~AA~AL~nLAs~s~e~----------------r~~Iv~--aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALs 308 (2102)
T PLN03200 247 SVRAEAAGALEALSSQSKEA----------------KQAIAD--AGGIPALINATVAPSKEFMQGEFAQALQENAMGALA 308 (2102)
T ss_pred HHHHHHHHHHHHHhcCCHHH----------------HHHHHH--CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHH
Confidence 88999999988887642111 111111 133566666554322110001111245666777777
Q ss_pred HHHHHcCCCcccchHHHHHhhhcCC-ChhhHHHHHHHHHHhhcCCC-hhhhhHHH--HHHHHHHHHHccCCCcHHH-HHH
Q 039062 355 LVARTVGDDIVPLVIPFIEENIAKP-DWRQREAATYAFGSILEGPS-PDKLLHIV--NVALSFMLSALTKDPNNHV-KDT 429 (871)
Q Consensus 355 ~l~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~-~~~~~~~l--~~i~~~l~~~l~~d~~~~v-r~~ 429 (871)
.++... +.+++++.+.+.+. +....-.++.++..+...+. .......+ ..+.+.+...+ ++++|.. +..
T Consensus 309 NIcgg~-----~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Ll-r~k~p~~vqe~ 382 (2102)
T PLN03200 309 NICGGM-----SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLL-KPRDTKLVQER 382 (2102)
T ss_pred HHhCCc-----hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHh-CCCCCchhHHH
Confidence 776432 56777777766553 33333344455555533221 11111112 24567888888 8776654 666
Q ss_pred HHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchH--HHHHH
Q 039062 430 TAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFF--QEIVQ 506 (871)
Q Consensus 430 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~--~~il~ 506 (871)
+..+|..+..... ....-......+.|+..+.. +..+++.++++|..++.+-. .....+ ...++
T Consensus 383 V~eALasl~gN~~-------l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~------e~~~aIi~~ggIp 449 (2102)
T PLN03200 383 IIEALASLYGNAY-------LSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKG------GLWEALGGREGVQ 449 (2102)
T ss_pred HHHHHHHhcCChH-------HHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCH------HHHHHHHHcCcHH
Confidence 6666644322211 00011123566777777774 77999999999999985411 111111 12366
Q ss_pred HHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHH
Q 039062 507 SLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMV-LQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQ 585 (871)
Q Consensus 507 ~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 585 (871)
.|+..+.+. +..++..+..+++.+...........+ ...+|.+.+.+... + ..++..+++++.
T Consensus 450 ~LV~LL~s~---s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~--------~-----~~iqeeAawAL~ 513 (2102)
T PLN03200 450 LLISLLGLS---SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG--------S-----QKAKEDSATVLW 513 (2102)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--------C-----HHHHHHHHHHHH
Confidence 677777765 357888999999999865443222222 46788888888542 1 146677999999
Q ss_pred HHHHHhCCCCCchhhhhhhH--HHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcch
Q 039062 586 VIIQKLGSSEPTKYVFMQYA--DQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEY 663 (871)
Q Consensus 586 ~l~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~ 663 (871)
+++.. ..+ ....+ ...++.++++|++.+...++.+..+|..++....... + +.+...+..+ +.
T Consensus 514 NLa~~-~~q------ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---I----~~Lv~LLlsd-d~ 578 (2102)
T PLN03200 514 NLCCH-SED------IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---I----SQLTALLLGD-LP 578 (2102)
T ss_pred HHhCC-cHH------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---H----HHHHHHhcCC-Ch
Confidence 98762 111 33333 2578889999999888999999999999986543321 2 3333445433 45
Q ss_pred hHHHHHHHHHHHHHHHhhhc-cc-cc--HHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChH-HhHHHHHHHH
Q 039062 664 QVCAVTVGVVGDICRALEEK-IL-PY--CDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFE-KYLMYAMPML 738 (871)
Q Consensus 664 ~v~~~a~~~l~~l~~~~~~~-~~-~~--~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~-~~~~~i~~~l 738 (871)
.++..++..++.+....... +. .- ...-++.|.++++++ +..+++.|+++++.++..-...-. -.....+|.+
T Consensus 579 ~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg--s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPL 656 (2102)
T PLN03200 579 ESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS--KEETQEKAASVLADIFSSRQDLCESLATDEIINPC 656 (2102)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHH
Confidence 78888899998886644321 11 00 135678899999988 788999999999999875544322 2234567788
Q ss_pred HHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchH-HHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039062 739 QSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAP-HILQFLDSMYMEKDMDELVMKTAIGL 817 (871)
Q Consensus 739 ~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~~r~~a~~~ 817 (871)
...+... + ..++..+..++..+...... .....++. ..++.+..++++ .+.+++..++..
T Consensus 657 V~LLss~------~-------~~v~keAA~AL~nL~~~~~~----~q~~~~v~~GaV~pL~~LL~~--~d~~v~e~Al~A 717 (2102)
T PLN03200 657 IKLLTNN------T-------EAVATQSARALAALSRSIKE----NRKVSYAAEDAIKPLIKLAKS--SSIEVAEQAVCA 717 (2102)
T ss_pred HHHHhcC------C-------hHHHHHHHHHHHHHHhCCCH----HHHHHHHHcCCHHHHHHHHhC--CChHHHHHHHHH
Confidence 8888764 2 35677888888888864321 11122233 378888888886 478899999999
Q ss_pred HHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHHHH
Q 039062 818 LGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINK 867 (871)
Q Consensus 818 l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 867 (871)
++.++..-... ...... ..|.++...+. +++..+|++|.||+.++-+
T Consensus 718 LanLl~~~e~~-~ei~~~-~~I~~Lv~lLr-~G~~~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 718 LANLLSDPEVA-AEALAE-DIILPLTRVLR-EGTLEGKRNAARALAQLLK 764 (2102)
T ss_pred HHHHHcCchHH-HHHHhc-CcHHHHHHHHH-hCChHHHHHHHHHHHHHHh
Confidence 99999865322 111111 14666666666 5789999999999977643
No 26
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.82 E-value=3.9e-16 Score=157.46 Aligned_cols=634 Identities=12% Similarity=0.082 Sum_probs=391.7
Q ss_pred CCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCC-ChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 039062 103 STVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQL-PAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQ 181 (871)
Q Consensus 103 ~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~ 181 (871)
+.++.||+..+.+.+.++... .-++++|+|.....+. +++.|+.++++.++|+....... -.|+..++.++..
T Consensus 292 ~~deYVRnvt~ra~~vva~al----gv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~--l~hl~~l~~ci~~ 365 (975)
T COG5181 292 SKDEYVRNVTGRAVGVVADAL----GVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSR--LSHLGPLLKCISK 365 (975)
T ss_pred cccHHHHHHHHHHHHHHHHhh----CcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccH--HhhhhhHHHHHHH
Confidence 456899999999999999886 5689999999988886 78999999999999999873333 4788999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH-hHHhhHHhHHH
Q 039062 182 GMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISST-YYEKLAPYMQD 260 (871)
Q Consensus 182 ~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~ 260 (871)
++. |.+..||.-+..+++.+.+..... -. +..+.++..+.+-.+........+-+++++.++-. .|++..-+-.+
T Consensus 366 ~l~--D~~~~vRi~tA~alS~lae~~~Py-gi-e~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre 441 (975)
T COG5181 366 LLK--DRSRFVRIDTANALSYLAELVGPY-GI-EQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTRE 441 (975)
T ss_pred Hhh--ccceeeeehhHhHHHHHHHhcCCc-ch-HHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHH
Confidence 999 889999999999888877654321 11 11244444444433322222222222333222211 23333333446
Q ss_pred HHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhc-C-----CC----------CCCC-C-Cc-hhhhHHh--hhh
Q 039062 261 IYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYG-S-----DF----------TGNS-D-IP-CFYFIKQ--ALP 319 (871)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~-~-----~~----------~~~~-~-~~-~~~~~~~--~~~ 319 (871)
..+.+.+.+++++++.....+.+ ...|........++. . .+ ++++ + +. ..-.... --+
T Consensus 442 ~m~iv~ref~spdeemkk~~l~v-~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~ 520 (975)
T COG5181 442 HMEIVFREFKSPDEEMKKDLLVV-ERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDP 520 (975)
T ss_pred HHHHHHHHhCCchhhcchhHHHH-HHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCCh
Confidence 77777788888888766554433 233432111000000 0 00 0000 0 00 0000000 001
Q ss_pred hhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCc-----ccchHHHHHhhhcCCChhhHHHHHHHHHHh
Q 039062 320 ALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDI-----VPLVIPFIEENIAKPDWRQREAATYAFGSI 394 (871)
Q Consensus 320 ~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~-----~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l 394 (871)
.++..+++... |++ -..|+-++.+..++...+|..- ...++..+...++..+-.+. ..+-+++.+
T Consensus 521 ~v~~kil~~~~---De~------ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~-~il~~f~tv 590 (975)
T COG5181 521 RVSRKILEYYS---DEP------EPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVG-LILPCFSTV 590 (975)
T ss_pred HHHHHHHhhcc---CCc------chhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccccc-EEEecccce
Confidence 11222222111 111 1456666677777766665322 22233333333333221111 112344554
Q ss_pred hcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHH
Q 039062 395 LEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNV 473 (871)
Q Consensus 395 ~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v 473 (871)
.-... -..++|++.++..++..+ +++.|.||..|+...|.++..+.. ......+..+=..|.+.+.. .|.|
T Consensus 591 ~vsl~-~r~kp~l~~ivStiL~~L-~~k~p~vR~~aadl~~sl~~vlk~------c~e~~~l~klg~iLyE~lge~ypEv 662 (975)
T COG5181 591 LVSLE-FRGKPHLSMIVSTILKLL-RSKPPDVRIRAADLMGSLAKVLKA------CGETKELAKLGNILYENLGEDYPEV 662 (975)
T ss_pred eeehh-hccCcchHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHHHh------cchHHHHHHHhHHHHHhcCcccHHH
Confidence 44432 345688999999999999 999999999999998888887752 22234455555566666664 6776
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039062 474 AEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIM 553 (871)
Q Consensus 474 ~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~ 553 (871)
......|+..+..... ...+.|-...|++.+...+.+. +.++....+..++.++...++...+ .+.|-..+
T Consensus 663 Lgsil~Ai~~I~sv~~----~~~mqpPi~~ilP~ltPILrnk---h~Kv~~nti~lvg~I~~~~peyi~~--rEWMRIcf 733 (975)
T COG5181 663 LGSILKAICSIYSVHR----FRSMQPPISGILPSLTPILRNK---HQKVVANTIALVGTICMNSPEYIGV--REWMRICF 733 (975)
T ss_pred HHHHHHHHHHHhhhhc----ccccCCchhhccccccHhhhhh---hHHHhhhHHHHHHHHHhcCcccCCH--HHHHHHHH
Confidence 5555555554443221 4566777888888888888776 5688889999999999988864332 34444444
Q ss_pred HHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHH
Q 039062 554 MELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGA 633 (871)
Q Consensus 554 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~ 633 (871)
+.+.... ..-.+++..+...++.|.+.+|+. .++..++.-|+..+...|...-.+++.
T Consensus 734 eLvd~Lk----------s~nKeiRR~A~~tfG~Is~aiGPq------------dvL~~LlnnLkvqeRq~RvctsvaI~i 791 (975)
T COG5181 734 ELVDSLK----------SWNKEIRRNATETFGCISRAIGPQ------------DVLDILLNNLKVQERQQRVCTSVAISI 791 (975)
T ss_pred HHHHHHH----------HhhHHHHHhhhhhhhhHHhhcCHH------------HHHHHHHhcchHHHHHhhhhhhhhhhh
Confidence 4432211 001257778899999999998875 466677777766555556666667777
Q ss_pred HHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHH
Q 039062 634 LAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIF 713 (871)
Q Consensus 634 l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~ 713 (871)
+++.+|. -.++|.+..-...+ +..|+.-.+..++.+.+..++.-..|+-.+.|.|-+.+.+. +..-|+.+.
T Consensus 792 Vae~cgp------fsVlP~lm~dY~TP-e~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDr--D~vhRqta~ 862 (975)
T COG5181 792 VAEYCGP------FSVLPTLMSDYETP-EANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDR--DPVHRQTAM 862 (975)
T ss_pred hHhhcCc------hhhHHHHHhcccCc-hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc--chHHHHHHH
Confidence 7776663 25778877777644 45888888999999999999888899999999999999887 667788899
Q ss_pred HHHHHHHHhhccC-----hHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCcccccccc
Q 039062 714 SCFGDIALAIGEN-----FEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIP 788 (871)
Q Consensus 714 ~~l~~i~~~~~~~-----~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~ 788 (871)
+.+-.++.+++.- +...+.-++|-+++ ....+.....+++.++.+.++..
T Consensus 863 nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle-----------------~sPhvi~~~~Eg~e~~~~~lg~g-------- 917 (975)
T COG5181 863 NVIRHLVLNCPGTGDEDAAIHLLNLLWPNILE-----------------PSPHVIQSFDEGMESFATVLGSG-------- 917 (975)
T ss_pred HHHHHHhcCCCCcccHHHHHHHHHHhhhhccC-----------------CCcHHHHHHHHHHHHHHHHhccH--------
Confidence 9999998875421 22233333333321 12345556666777787777643
Q ss_pred chHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccc
Q 039062 789 YAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQ 835 (871)
Q Consensus 789 ~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~ 835 (871)
.++..+.+-+=. -+..+|+.-...+..+-....+...||+|.
T Consensus 918 ---~~m~Yv~qGLFH--Ps~~VRk~ywtvyn~myv~~~damvp~ypv 959 (975)
T COG5181 918 ---AMMKYVQQGLFH--PSSTVRKRYWTVYNIMYVFDSDAMVPCYPV 959 (975)
T ss_pred ---HHHHHHHHhccC--chHHHHHHHHHHHhhhhhcccccccccccC
Confidence 566666544433 367788876666666555555667788886
No 27
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=4e-15 Score=165.65 Aligned_cols=596 Identities=15% Similarity=0.198 Sum_probs=382.9
Q ss_pred CCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhc--CC--CCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhh
Q 039062 85 LDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIEL--PQ--KQWPELIVSLLSNVHQLPAHVKQATLETLGYLCE 160 (871)
Q Consensus 85 ~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~--~~--~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~ 160 (871)
.+......+...+...+.+++++.|.+.+.-+-.+.++.. |. ...+++...+...+.+.|+-...-|-+.++-+.+
T Consensus 811 ~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYe 890 (1702)
T KOG0915|consen 811 VNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYE 890 (1702)
T ss_pred cCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEe
Confidence 3444456788888899999999999998887777777653 21 2557777777777777777666667666664433
Q ss_pred ccCCCccchhhHHHHHHHHHhhhcCCC-------CCHHH-------------HHHHHHHHHHhhhcchhcccChhhHHHH
Q 039062 161 EVSPDVVEQDHVNKILTAVVQGMNASE-------MNNDV-------------RLAATRALYNALSFAQANFSNDMERDYI 220 (871)
Q Consensus 161 ~~~~~~~~~~~~~~i~~~l~~~l~~~~-------~~~~v-------------r~~al~~l~~~~~~~~~~~~~~~~~~~i 220 (871)
-. ... .-..++..++..+.... .+.++ .....+=+.++.+ ...+ +.+
T Consensus 891 lg-d~~----~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS----dl~q----PdL 957 (1702)
T KOG0915|consen 891 LG-DSS----LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS----DLGQ----PDL 957 (1702)
T ss_pred cC-Cch----hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh----hcCC----hHH
Confidence 32 222 23344444444443100 00000 0011111111110 0111 112
Q ss_pred HHHHHHhhc-cCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhc
Q 039062 221 MRVVCEATQ-SAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYG 299 (871)
Q Consensus 221 ~~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~ 299 (871)
+=-++++.+ +.-+.-|..|.-.++.+++...+.+.||++++++-+.+.--|++..++..-...|..+..+..
T Consensus 958 VYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k------- 1030 (1702)
T KOG0915|consen 958 VYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSK------- 1030 (1702)
T ss_pred HHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChH-------
Confidence 112222222 234667889999999999999999999999999999998889999999888889988866432
Q ss_pred CCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCC
Q 039062 300 SDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKP 379 (871)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~ 379 (871)
..+..++..|+.- +...+.+.
T Consensus 1031 ------------~~vd~y~neIl~e-----------------------------------------------LL~~lt~k 1051 (1702)
T KOG0915|consen 1031 ------------KVVDEYLNEILDE-----------------------------------------------LLVNLTSK 1051 (1702)
T ss_pred ------------HHHHHHHHHHHHH-----------------------------------------------HHHhccch
Confidence 2233333222222 22355677
Q ss_pred ChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHH---HHHHHhhhhccCCCCCCccchhhH
Q 039062 380 DWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAW---TLGRIFEFLHGSTIGTPIITQANC 456 (871)
Q Consensus 380 ~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~---~l~~~~~~~~~~~~~~~~~~~~~~ 456 (871)
.|++|++++.++..+..+...+.+.+.++++...++..+ +|-...||.++-. ++++++-..... ..+....+.+
T Consensus 1052 ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~--~~~~~~~~~l 1128 (1702)
T KOG0915|consen 1052 EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDV--TNGAKGKEAL 1128 (1702)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhccc--CCcccHHHHH
Confidence 899999999999999998766788899999999999999 9999999987644 455555544321 1234567788
Q ss_pred HHHHHHHHH--hccCChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHH-HHHHHHHHHH
Q 039062 457 QQIITVLLQ--SMKDTPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLR-TAAYETLNEV 533 (871)
Q Consensus 457 ~~il~~l~~--~l~d~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr-~~a~~~l~~l 533 (871)
..++|.++. .+.+-+.||..+...+..+++.. +..+.||++.+++.+++.++.-. +.+- ..++.+.
T Consensus 1129 ~~iLPfLl~~gims~v~evr~~si~tl~dl~Kss-----g~~lkP~~~~LIp~ll~~~s~lE---~~vLnYls~r~~--- 1197 (1702)
T KOG0915|consen 1129 DIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSS-----GKELKPHFPKLIPLLLNAYSELE---PQVLNYLSLRLI--- 1197 (1702)
T ss_pred HHHHHHHhccCcccchHHHHHHHHHHHHHHHHhc-----hhhhcchhhHHHHHHHHHccccc---hHHHHHHHHhhh---
Confidence 889998876 34446789999999999888753 67899999999999999887653 2221 1111110
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHH
Q 039062 534 VRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFL 613 (871)
Q Consensus 534 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~ 613 (871)
..-.+.++.+.....+. ...++++...++.+.. ..+..++|.+.
T Consensus 1198 ---------~~e~ealDt~R~s~aks------------------spmmeTi~~ci~~iD~---------~vLeelip~l~ 1241 (1702)
T KOG0915|consen 1198 ---------NIETEALDTLRASAAKS------------------SPMMETINKCINYIDI---------SVLEELIPRLT 1241 (1702)
T ss_pred ---------hhHHHHHHHHHHhhhcC------------------CcHHHHHHHHHHhhhH---------HHHHHHHHHHH
Confidence 00011111111111000 0133444444444332 35678888888
Q ss_pred HHHccc-CcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhh-cccccHHHH
Q 039062 614 RVFACR-SATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEE-KILPYCDGI 691 (871)
Q Consensus 614 ~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~i 691 (871)
+++..+ .-..|..+...+..++..+|.++.||...++..++..++|.++ .++......+|.+++...+ .+..++..+
T Consensus 1242 el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNe-sv~kafAsAmG~L~k~Ss~dq~qKLie~~ 1320 (1702)
T KOG0915|consen 1242 ELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNE-SVRKAFASAMGYLAKFSSPDQMQKLIETL 1320 (1702)
T ss_pred HHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccH-HHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 888775 3456888889999999999999999999999999999998655 7888888889998887663 566555555
Q ss_pred HHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHH
Q 039062 692 MTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYS 771 (871)
Q Consensus 692 ~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~ 771 (871)
+..++. . ....+..++..+.+|+.+..+.+..|.+.++|.+.=..... ++ ...++++.
T Consensus 1321 l~~~l~---k---~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee------~K----a~q~Lw~d------ 1378 (1702)
T KOG0915|consen 1321 LADLLG---K---DESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEE------EK----ANQELWND------ 1378 (1702)
T ss_pred HHHHhc---c---CCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH------HH----HHHHHHHH------
Confidence 544442 2 22344566677777888888999999999999998665432 11 12233332
Q ss_pred HHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhccccc-ccccc
Q 039062 772 GIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAG-SLIQQ 835 (871)
Q Consensus 772 ~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~-~~l~~ 835 (871)
+...+... ....+.-|.+.++..++....+ +....+|..+...+-.++...-+... |+.-.
T Consensus 1379 -vW~e~vsg-gagtvrl~~~eiLn~iceni~n-n~~w~lr~q~Akai~~~a~~~sss~~~p~ilk 1440 (1702)
T KOG0915|consen 1379 -VWAELVSG-GAGTVRLYLLEILNLICENITN-NESWKLRKQAAKAIRVIAEGLSSSAPIPVILK 1440 (1702)
T ss_pred -HHHHhCCC-CcchhhhhHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHcccccccCChHHHHH
Confidence 33332221 1222333666777776555443 35688899888888888877655443 44443
No 28
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=1.9e-15 Score=155.53 Aligned_cols=516 Identities=14% Similarity=0.155 Sum_probs=334.7
Q ss_pred CCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCC-ChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 039062 103 STVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQL-PAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQ 181 (871)
Q Consensus 103 ~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~ 181 (871)
|+...+|.....+...+.... +.+.-..+++..-+.+.+. +...|++.+...+.+..+. .. - +.....++..++.
T Consensus 28 d~~~~v~~~ml~a~~~~~~~~-~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~-~~-~-d~~~~~~~~~~~~ 103 (569)
T KOG1242|consen 28 DRRIDVRGNMLEAGEAAINQH-GDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHL-QI-V-DPRPISIIEILLE 103 (569)
T ss_pred CcchhhHHhHHHHHHHHHHhh-hHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhc-cc-c-CcchhHHHHHHHH
Confidence 344567765555444433221 1012244566666666553 5667887777777776665 11 1 3344566677777
Q ss_pred hhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHh-hHHhHHH
Q 039062 182 GMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEK-LAPYMQD 260 (871)
Q Consensus 182 ~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~ 260 (871)
.+. -+++.+|.+...|+..+...... .....+...+.+++......-|..+...+..++..++.. +.+ ..
T Consensus 104 ~~~--tps~~~q~~~~~~l~~~~~~~~~-----~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~--~~ 174 (569)
T KOG1242|consen 104 ELD--TPSKSVQRAVSTCLPPLVVLSKG-----LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE--FG 174 (569)
T ss_pred hcC--CCcHHHHHHHHHHhhhHHHHhhc-----cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh--hh
Confidence 777 68999999999999887643221 112567777778777777778888888888887654331 121 13
Q ss_pred HHHHHHHHhhCCChhHHHH-HHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccc
Q 039062 261 IYSITAKAVREDEEPVALQ-AIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQE 339 (871)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~-a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~ 339 (871)
++.-+....++.....+.. ++-.....+..- ....++++..++|.++....+..
T Consensus 175 ~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L-------------------g~~~EPyiv~~lp~il~~~~d~~------ 229 (569)
T KOG1242|consen 175 FLDNLSKAIIDKKSALNREAALLAFEAAQGNL-------------------GPPFEPYIVPILPSILTNFGDKI------ 229 (569)
T ss_pred HHHHHHHHhcccchhhcHHHHHHHHHHHHHhc-------------------CCCCCchHHhhHHHHHHHhhccc------
Confidence 5555555666655443332 222221222210 12344555556666665543211
Q ss_pred cccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHcc
Q 039062 340 EGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALT 419 (871)
Q Consensus 340 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~ 419 (871)
-.+|.+|..+...+..+++..-++.++|.+...+....|+.+.+++..+|.+++.. ++.+...+++++|.+...+
T Consensus 230 ---~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~a-p~qLs~~lp~iiP~lsevl- 304 (569)
T KOG1242|consen 230 ---NKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA-PKQLSLCLPDLIPVLSEVL- 304 (569)
T ss_pred ---hhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-hHHHHHHHhHhhHHHHHHH-
Confidence 26899999999999999877666666666655555558999999999999999886 7899999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCCh-HHHHHHHHHHHHHHhhcccCCCCCCCc
Q 039062 420 KDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTP-NVAEKACGALYFLAQGYEDVGPSSPLT 498 (871)
Q Consensus 420 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~-~v~~~a~~~l~~l~~~~~~~~~~~~l~ 498 (871)
.|.+|.||.++..++-++++...+ .-+..++|.|++++.|.. ++.+ +...|. .. ......-.
T Consensus 305 ~DT~~evr~a~~~~l~~~~svidN----------~dI~~~ip~Lld~l~dp~~~~~e-~~~~L~---~t---tFV~~V~~ 367 (569)
T KOG1242|consen 305 WDTKPEVRKAGIETLLKFGSVIDN----------PDIQKIIPTLLDALADPSCYTPE-CLDSLG---AT---TFVAEVDA 367 (569)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhcc----------HHHHHHHHHHHHHhcCcccchHH-HHHhhc---ce---eeeeeecc
Confidence 999999999999999999988752 348899999999998844 3332 222221 10 00001111
Q ss_pred chHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHH
Q 039062 499 PFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQG 578 (871)
Q Consensus 499 ~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 578 (871)
|-+ .-++|.+...+++-. . ....
T Consensus 368 psL--------------------------------------------almvpiL~R~l~eRs----------t---~~kr 390 (569)
T KOG1242|consen 368 PSL--------------------------------------------ALMVPILKRGLAERS----------T---SIKR 390 (569)
T ss_pred hhH--------------------------------------------HHHHHHHHHHHhhcc----------c---hhhh
Confidence 222 233333333332210 0 1112
Q ss_pred HHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhc
Q 039062 579 LLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQ 658 (871)
Q Consensus 579 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 658 (871)
.++..+.+++.-... +..+.+|++.++|.+-..+.+..+++|.-+..+++.+.+..|..- .+...|.+....+
T Consensus 391 ~t~~IidNm~~LveD----p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~---f~d~~p~l~e~~~ 463 (569)
T KOG1242|consen 391 KTAIIIDNMCKLVED----PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVS---FDDLIPELSETLT 463 (569)
T ss_pred hHHHHHHHHHHhhcC----HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc---ccccccHHHHhhc
Confidence 244444444444411 112788999999999999999889999999999999999988643 2777888777776
Q ss_pred CCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHH
Q 039062 659 NFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPML 738 (871)
Q Consensus 659 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l 738 (871)
+.....-+..+...++......+ ..+...+++.++....+...++.++....+.+.-+-...+..|.+|+-.+++.+
T Consensus 464 ~~k~~~~~~g~aq~l~evl~~~~---v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~ 540 (569)
T KOG1242|consen 464 SEKSLVDRSGAAQDLSEVLAGLG---VEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEF 540 (569)
T ss_pred cchhhhhhHHHhhhHHHHHhccc---chHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHH
Confidence 54333334444455555544433 344567777777766666445668888888888888889999999999999999
Q ss_pred HHHHhhc
Q 039062 739 QSAADLS 745 (871)
Q Consensus 739 ~~~l~~~ 745 (871)
.+.+...
T Consensus 541 ~k~~ad~ 547 (569)
T KOG1242|consen 541 LKGLADN 547 (569)
T ss_pred HHHhhhc
Confidence 9998865
No 29
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=3.7e-15 Score=153.39 Aligned_cols=529 Identities=16% Similarity=0.169 Sum_probs=357.5
Q ss_pred ccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCC
Q 039062 229 QSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVRE-DEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSD 307 (871)
Q Consensus 229 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (871)
.++.++++...++........++.....++.+++. +.+.+ .+..++...+-+.+.++.+-
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~---~~l~~~~~~~~~~~~~v~~~~~a~~~---------------- 87 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFE---QRLNSLHNDNLRNNVVVLEGTLAFHL---------------- 87 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHH---HHhccchhHHHhhhhHHHHHHHHHhc----------------
Confidence 56778888888888888877766654444433333 34433 23344444444444443321
Q ss_pred CchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHH
Q 039062 308 IPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAA 387 (871)
Q Consensus 308 ~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a 387 (871)
....+..-.++..+++.+.. +. -.++.+...|+..+.......-...+.+.+.+.++...-..|..+
T Consensus 88 ----~~~d~~~~~~~~~~~~~~~t----ps-----~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a 154 (569)
T KOG1242|consen 88 ----QIVDPRPISIIEILLEELDT----PS-----KSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGA 154 (569)
T ss_pred ----cccCcchhHHHHHHHHhcCC----Cc-----HHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhh
Confidence 00111111233444433221 11 146677777887776665444445666777777788888889999
Q ss_pred HHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHH-HHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHh
Q 039062 388 TYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNH-VKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQS 466 (871)
Q Consensus 388 ~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~-vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 466 (871)
...+..+..+.+...+.+ ..++..+.... .|.++. .|..+..+....+..++ .....|+-+++|.++..
T Consensus 155 a~~~ag~v~g~~i~~~~~--~~~l~~l~~ai-~dk~~~~~re~~~~a~~~~~~~Lg-------~~~EPyiv~~lp~il~~ 224 (569)
T KOG1242|consen 155 AYGLAGLVNGLGIESLKE--FGFLDNLSKAI-IDKKSALNREAALLAFEAAQGNLG-------PPFEPYIVPILPSILTN 224 (569)
T ss_pred hHHHHHHHcCcHHhhhhh--hhHHHHHHHHh-cccchhhcHHHHHHHHHHHHHhcC-------CCCCchHHhhHHHHHHH
Confidence 999999888764333333 34666777777 776554 45566666666666665 34577999999999999
Q ss_pred ccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHH
Q 039062 467 MKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMV 545 (871)
Q Consensus 467 l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 545 (871)
..| .+.||.++..+...+...+..+ .+...++..+..+. ...| +.+.++++.++.++.+.+....-.+
T Consensus 225 ~~d~~~~Vr~Aa~~a~kai~~~~~~~----aVK~llpsll~~l~----~~kW---rtK~aslellg~m~~~ap~qLs~~l 293 (569)
T KOG1242|consen 225 FGDKINKVREAAVEAAKAIMRCLSAY----AVKLLLPSLLGSLL----EAKW---RTKMASLELLGAMADCAPKQLSLCL 293 (569)
T ss_pred hhccchhhhHHHHHHHHHHHHhcCcc----hhhHhhhhhHHHHH----HHhh---hhHHHHHHHHHHHHHhchHHHHHHH
Confidence 988 7899999999988887766543 23333333333333 2245 4467899999999999999888999
Q ss_pred HHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhh
Q 039062 546 LQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHE 625 (871)
Q Consensus 546 ~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 625 (871)
+.++|.+.+.+.++. ++++..+..|+..+....... .+..++|.++.++.++...+.
T Consensus 294 p~iiP~lsevl~DT~-------------~evr~a~~~~l~~~~svidN~---------dI~~~ip~Lld~l~dp~~~~~- 350 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTK-------------PEVRKAGIETLLKFGSVIDNP---------DIQKIIPTLLDALADPSCYTP- 350 (569)
T ss_pred hHhhHHHHHHHccCC-------------HHHHHHHHHHHHHHHHhhccH---------HHHHHHHHHHHHhcCcccchH-
Confidence 999999999886642 357788889998888776643 477888899999988754333
Q ss_pred hHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHh--hhcccccHHHHHHHHHHHccCCC
Q 039062 626 EAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRAL--EEKILPYCDGIMTQLLKDLSSNQ 703 (871)
Q Consensus 626 ~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~~~~i~~~l~~~l~~~~ 703 (871)
.++..++.-.-. ..--.|-+..++|.+.+.+...+. ..+..++..++++++-. +..+.||++.++|.+-..+.+.
T Consensus 351 e~~~~L~~ttFV-~~V~~psLalmvpiL~R~l~eRst-~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~- 427 (569)
T KOG1242|consen 351 ECLDSLGATTFV-AEVDAPSLALMVPILKRGLAERST-SIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA- 427 (569)
T ss_pred HHHHhhcceeee-eeecchhHHHHHHHHHHHHhhccc-hhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC-
Confidence 333333321100 011125667899999999976654 67788889999999988 4789999999999999999887
Q ss_pred CCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccc
Q 039062 704 LHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKT 783 (871)
Q Consensus 704 ~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~ 783 (871)
.+++|.-+..++|.+.+..|..- ++...|.+.+..... ....-|.+..+.+...+..++..
T Consensus 428 -~PEvR~vaarAL~~l~e~~g~~~---f~d~~p~l~e~~~~~------------k~~~~~~g~aq~l~evl~~~~v~--- 488 (569)
T KOG1242|consen 428 -VPEVRAVAARALGALLERLGEVS---FDDLIPELSETLTSE------------KSLVDRSGAAQDLSEVLAGLGVE--- 488 (569)
T ss_pred -ChhHHHHHHHHHHHHHHHHHhhc---ccccccHHHHhhccc------------hhhhhhHHHhhhHHHHHhcccch---
Confidence 78999999999999999998752 267777777766543 11223445666677776665432
Q ss_pred cccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 039062 784 QLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARL 863 (871)
Q Consensus 784 ~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~ 863 (871)
+...+++.+.........++-++..-+.++.-+-..+|..+.||..+ .+.++++... +.|..++.++..+=.
T Consensus 489 -----~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~--i~~~~~k~~a-d~de~~~~~~~~~~~ 560 (569)
T KOG1242|consen 489 -----KVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHE--ILDEFLKGLA-DNDEKGRDTALEAGE 560 (569)
T ss_pred -----HHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHH--HHHHHHHHhh-hcCCccccchhhhhh
Confidence 34455555544443334456677777888888888899999999998 4777888777 688888888776533
No 30
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=5.2e-11 Score=131.32 Aligned_cols=755 Identities=13% Similarity=0.126 Sum_probs=406.2
Q ss_pred hHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 039062 35 LPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQ 114 (871)
Q Consensus 35 ~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~ 114 (871)
.+.+...+...+...+.+..++..+...|...+.+.. ...|. ....+..+. .++....+..+.+|+.+.+
T Consensus 91 Fs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd-------~~aW~--~~~t~~~~~-~il~~~~h~~pkvRk~a~~ 160 (1176)
T KOG1248|consen 91 FSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQD-------ASAWS--YSSTKTELF-GILAFAAHKKPKVRKAAQR 160 (1176)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcc-------hhhhc--cccHHHHHH-HHHHHHhcCchHHHHHHHH
Confidence 3566666777776555677888888888888876532 47897 344444443 4555566777999999999
Q ss_pred HHHHHHhhh--cCCCCchHHHHHHHHhhc---C----CChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcC
Q 039062 115 VIAKVAGIE--LPQKQWPELIVSLLSNVH---Q----LPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNA 185 (871)
Q Consensus 115 ~l~~i~~~~--~~~~~~~~ll~~L~~~l~---~----~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~ 185 (871)
.+..+...- .|...-|........++. + .........|..|..++..+ | ...+..+...++..+.
T Consensus 161 ~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~-p----~~li~sl~e~lL~i~~- 234 (1176)
T KOG1248|consen 161 GIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTF-P----RPLIKSLCEVLLNITT- 234 (1176)
T ss_pred HHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccC-C----HHHHHHHHHHHHhhcc-
Confidence 999998642 122345544433333321 1 11112234555566555554 3 5567888889999888
Q ss_pred CCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccC-cHHHHHHHHHHH----HHHHHHhHHhhHHhHHH
Q 039062 186 SEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSA-ELKIRQAAFECL----VSISSTYYEKLAPYMQD 260 (871)
Q Consensus 186 ~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~a~~~l----~~l~~~~~~~~~~~~~~ 260 (871)
..+..++..+++|+..+..-.+... ..+....++..+.+.--+. |.-.-..=+..+ ..++....+.....++.
T Consensus 235 -~s~v~v~~~~~q~l~~lf~~~~~~l-~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~ 312 (1176)
T KOG1248|consen 235 -ESPVLVLLEVLQCLHSLFKKHPTAL-AAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPR 312 (1176)
T ss_pred -cchHHHHHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhh
Confidence 7888999999999999876544421 1222234555555543222 211111111111 11222223333444556
Q ss_pred HHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCC-CCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCC----
Q 039062 261 IYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSD-FTGNSDIPCFYFIKQALPALVPLLLEILLKQEED---- 335 (871)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d---- 335 (871)
++..+.....+..+++...+-..+..+........+...+. ....-+. .++.....+-.++..+++.+.+...-
T Consensus 313 ~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~-kf~~~~~~ilqi~s~~fek~G~~s~~~l~~ 391 (1176)
T KOG1248|consen 313 LFSLFFTILESLIEELVQAASQSLKEILKESVTVIDALCSKQLHSLLDY-KFHAVWRFILQILSALFEKCGELSGPELTK 391 (1176)
T ss_pred hhhHHHHHHhcccHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHcc-hHHHHHHHHHHHHHHHHHHhhhhcCHHHHH
Confidence 77777776666766666555555554433211100000000 0000000 00011111111222222222110000
Q ss_pred --------cccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH
Q 039062 336 --------QDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV 407 (871)
Q Consensus 336 --------~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l 407 (871)
...++ ..-+.....|++.-....|.+.+=.++|.=. .-.+.+ ..=.+.|--+=++.....+.-+.
T Consensus 392 ~L~~l~~lr~~~d--~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl-~~~s~~----~~RsWLLPvLR~~i~~A~La~F~ 464 (1176)
T KOG1248|consen 392 TLEGLCDLRASPD--FFHKLQLDQCIGSAVRAMGPERVLTILPLNL-HAESLS----FTRSWLLPVLRDYIIGASLAFFT 464 (1176)
T ss_pred HHHHHHHhhcCCC--CccHHHHHHHHHHHHHhhCHHHHHHHcchhc-cccccc----cchhHhHHHHHHhhccCcHHHHH
Confidence 00001 2222234445555555555433322222211 001100 00011111111111001111122
Q ss_pred HHHHHHHHH------HccCCC--cH-HHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCChHHHHHHH
Q 039062 408 NVALSFMLS------ALTKDP--NN-HVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKAC 478 (871)
Q Consensus 408 ~~i~~~l~~------~l~~d~--~~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~ 478 (871)
..++|..-. .+ +++ .. .++.-.....+-+-.++.. |.....-+..+.+.+...+...+..|...|
T Consensus 465 ~~ivpla~sl~~K~~~l-~~~~~~~~~~~tl~~QLW~LLP~FC~~-----P~Dl~~sF~~la~~l~~al~~~~elr~~Ic 538 (1176)
T KOG1248|consen 465 EYIVPLAMSLQLKAKKL-KEAGSQVSLYDTLVDQLWSLLPGFCNY-----PVDLAESFTDLAPILGAALLKRPELRETIC 538 (1176)
T ss_pred HHHHHHHHHHHHHHHhh-hhccCcHHHHHHHHHHHHHhChhhhCC-----CccHHHHHHHHHHHHHHHHhcchHhHHHHH
Confidence 233332211 12 221 12 2233333333333333332 244455688899999999988889999999
Q ss_pred HHHHHHHhhccc----CCCCCCCcchHHHHHHHHHHhhccCChh---hhhHHHHHHHHHH-HHHHhcCCCcHHHH-----
Q 039062 479 GALYFLAQGYED----VGPSSPLTPFFQEIVQSLLTVTHREDAG---ESRLRTAAYETLN-EVVRSSTDETAPMV----- 545 (871)
Q Consensus 479 ~~l~~l~~~~~~----~~~~~~l~~~~~~il~~l~~~l~~~~~~---~~~vr~~a~~~l~-~l~~~~~~~~~~~~----- 545 (871)
.+|..+++...+ ......+..+..+.++.+.+........ ....|...+..+. ......+.+...-+
T Consensus 539 ~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~ 618 (1176)
T KOG1248|consen 539 NSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAG 618 (1176)
T ss_pred HHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 999999876411 1124567778888888888887654321 1233444444444 33333322111100
Q ss_pred -----------HHHHHHHHHHHHHhhhcc----C------CChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhh
Q 039062 546 -----------LQLVPVIMMELHKTLEGQ----K------LSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQY 604 (871)
Q Consensus 546 -----------~~ll~~l~~~l~~~~~~~----~------~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 604 (871)
....-.+++.+....... . ....+......+|.++...|..++.. +.. .-...+.
T Consensus 619 e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~---~~~~~q~ 694 (1176)
T KOG1248|consen 619 ELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSS-PSG---EGLVEQR 694 (1176)
T ss_pred hHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcC-Cch---hhHHHHH
Confidence 011111111111000000 0 00000000123666677777777665 111 1113456
Q ss_pred HHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHH--HHhhh
Q 039062 605 ADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDIC--RALEE 682 (871)
Q Consensus 605 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~--~~~~~ 682 (871)
...+++.+...+++.....+...+.+|..+.+..+.....+++..+|-++=.++.. +...|..|+.+|-.++ +...+
T Consensus 695 i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~-n~~aR~~Af~lL~~i~~i~~~~d 773 (1176)
T KOG1248|consen 695 IDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEV-NVKARRNAFALLVFIGAIQSSLD 773 (1176)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccc-cHHHHhhHHHHHHHHHHHHhhhc
Confidence 77788888888888888899999999999999999888888888888777666544 4478899999998887 33222
Q ss_pred cc-cc---cHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChH-HhHHHHHHHHHHHHhhcccCCCCChhHHH
Q 039062 683 KI-LP---YCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFE-KYLMYAMPMLQSAADLSAHTANVDDDMTE 757 (871)
Q Consensus 683 ~~-~~---~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~~d~~~~~ 757 (871)
.. .| -+...+..+...+-.. ...++...+-+++.+....+..+. ++++.++..+.-.+...
T Consensus 774 ~g~e~~~~~lnefl~~Isagl~gd--~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~------------ 839 (1176)
T KOG1248|consen 774 DGNEPASAILNEFLSIISAGLVGD--STRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN------------ 839 (1176)
T ss_pred ccccchHHHHHHHHHHHHhhhccc--HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC------------
Confidence 11 22 2333444444333222 122223336677777766665543 78888888888888765
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhccc-ccccccch
Q 039062 758 YTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSN-AGSLIQQS 836 (871)
Q Consensus 758 ~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~-~~~~l~~~ 836 (871)
...++..++..+..++..+. ...+.++.+.+++.+....++ ....+|...-.++..+++.+|-+ +.+|+|.
T Consensus 840 -sreI~kaAI~fikvlv~~~p----e~~l~~~~~~LL~sll~ls~d--~k~~~r~Kvr~LlekLirkfg~~eLe~~~pe- 911 (1176)
T KOG1248|consen 840 -SREIAKAAIGFIKVLVYKFP----EECLSPHLEELLPSLLALSHD--HKIKVRKKVRLLLEKLIRKFGAEELESFLPE- 911 (1176)
T ss_pred -CHHHHHHHHHHHHHHHHcCC----HHHHhhhHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHhCHHHHHhhCHH-
Confidence 36788889998888888763 456889999999999998876 57889999999999999999964 6688886
Q ss_pred HHHHHHHHHHHcC
Q 039062 837 LTSKDFLNECLSS 849 (871)
Q Consensus 837 ~~v~~~l~~~~~~ 849 (871)
-...+|......
T Consensus 912 -e~~klL~nIRK~ 923 (1176)
T KOG1248|consen 912 -EDMKLLTNIRKR 923 (1176)
T ss_pred -HHHHHHHHHHHH
Confidence 367777777644
No 31
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=9.9e-11 Score=126.57 Aligned_cols=604 Identities=14% Similarity=0.171 Sum_probs=341.0
Q ss_pred CCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcc--hh-----cc-cC
Q 039062 142 QLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFA--QA-----NF-SN 213 (871)
Q Consensus 142 ~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~--~~-----~~-~~ 213 (871)
++++..|.+|-.-|..+ .+.++++..+++.+.+...+..||.+|.-.+++.+... .. .+ ..
T Consensus 15 d~d~~~R~~AE~~L~q~-----------~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~ 83 (1010)
T KOG1991|consen 15 DSDAKERKAAEQQLNQL-----------EKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIP 83 (1010)
T ss_pred CCChHHHHHHHHHHHHh-----------hcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCC
Confidence 44588898888888654 33455667777777765667889999999999988532 11 11 22
Q ss_pred hhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH-hHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHH
Q 039062 214 DMERDYIMRVVCEATQSAELKIRQAAFECLVSISST-YYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEI 292 (871)
Q Consensus 214 ~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~ 292 (871)
++.+..+.+.+...+...+.-+|..-..|+..+++. +|..|.. +++.+-..+++.+......|+-++..+++...
T Consensus 84 e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~----l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye 159 (1010)
T KOG1991|consen 84 EEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPG----LLDKIKNLLQSQDANHVYGALLCLYQLFKTYE 159 (1010)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchh----HHHHHHHHhcCcchhhHHHHHHHHHHHHHHHh
Confidence 344566777777776656777888888899777765 5655554 45555557777777777777777777777542
Q ss_pred hhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHH-----------------------------------------------
Q 039062 293 DILEEYGSDFTGNSDIPCFYFIKQALPALVPLL----------------------------------------------- 325 (871)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----------------------------------------------- 325 (871)
++...+ +.. ....+...+|.+....
T Consensus 160 -----~k~~ee-R~~--l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~ 231 (1010)
T KOG1991|consen 160 -----WKKDEE-RQP--LGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELF 231 (1010)
T ss_pred -----hccccc-ccc--HHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHH
Confidence 110000 000 0011111111111111
Q ss_pred HHHHhcc-c-----CCccc--ccccccHhHHHHHHHHHHHHHcCCCcc--c-------------------chHHHHHhhh
Q 039062 326 LEILLKQ-E-----EDQDQ--EEGAWNIAMAGGTCLGLVARTVGDDIV--P-------------------LVIPFIEENI 376 (871)
Q Consensus 326 ~~~l~~~-~-----~d~~~--~~~~~~~r~~a~~~l~~l~~~~~~~~~--~-------------------~l~~~l~~~l 376 (871)
+..+... + .|+++ ...-|..++-|.-.|.++.+.+|+... + .++..+.++-
T Consensus 232 l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~ 311 (1010)
T KOG1991|consen 232 LSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWR 311 (1010)
T ss_pred HHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111100 0 11111 011257778888888888888874321 1 1111111111
Q ss_pred cCCChhh-----------------------------------------------------------------------HH
Q 039062 377 AKPDWRQ-----------------------------------------------------------------------RE 385 (871)
Q Consensus 377 ~~~~~~~-----------------------------------------------------------------------r~ 385 (871)
+ .-|-. +-
T Consensus 312 ~-~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~ 390 (1010)
T KOG1991|consen 312 Q-QLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDT 390 (1010)
T ss_pred h-cccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcH
Confidence 1 11111 23
Q ss_pred HHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHcc---CCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHH
Q 039062 386 AATYAFGSILEGPSPDKLLHIVNVALSFMLSALT---KDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITV 462 (871)
Q Consensus 386 ~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~---~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~ 462 (871)
||..++..++...+++.+.+.++.++..+.+.-+ ...+++-++.|+.++|.+++.+.... .....+=.-+++.
T Consensus 391 Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s----~~~~~mE~flv~h 466 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKS----PYKSQMEYFLVNH 466 (1010)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCC----chHHHHHHHHHHH
Confidence 3333333333332222222222222222221110 12245666778888888876664210 1111111223344
Q ss_pred HHHhccCC-hHHHHHHHHHHHHHHh-hcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcC--
Q 039062 463 LLQSMKDT-PNVAEKACGALYFLAQ-GYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSST-- 538 (871)
Q Consensus 463 l~~~l~d~-~~v~~~a~~~l~~l~~-~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~-- 538 (871)
++..++++ -..|.+|||.++.+++ .+.+ ...+.++++...+++.+.. +-.||..|.-|+..++....
T Consensus 467 VfP~f~s~~g~Lrarac~vl~~~~~~df~d-------~~~l~~ale~t~~~l~~d~--~lPV~VeAalALq~fI~~~~~~ 537 (1010)
T KOG1991|consen 467 VFPEFQSPYGYLRARACWVLSQFSSIDFKD-------PNNLSEALELTHNCLLNDN--ELPVRVEAALALQSFISNQEQA 537 (1010)
T ss_pred hhHhhcCchhHHHHHHHHHHHHHHhccCCC-------hHHHHHHHHHHHHHhccCC--cCchhhHHHHHHHHHHhcchhh
Confidence 44444443 3679999999999973 2322 2345667777777777433 55799999999999999987
Q ss_pred -CCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHH----HHH
Q 039062 539 -DETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMG----LFL 613 (871)
Q Consensus 539 -~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~----~l~ 613 (871)
+.+.++++.+|+.++.+.++.- .| .+..++..++..++.+ +.|++..+.+ .+.
T Consensus 538 ~e~~~~hvp~~mq~lL~L~ne~E-------nd---------~Lt~vme~iV~~fseE------lsPfA~eL~q~La~~F~ 595 (1010)
T KOG1991|consen 538 DEKVSAHVPPIMQELLKLSNEVE-------ND---------DLTNVMEKIVCKFSEE------LSPFAVELCQNLAETFL 595 (1010)
T ss_pred hhhHhhhhhHHHHHHHHHHHhcc-------hh---------HHHHHHHHHHHHHHHh------hchhHHHHHHHHHHHHH
Confidence 3488999999999998887651 11 1567888999999988 8888765554 445
Q ss_pred HHHcc---cCcchhhhHHH------HHHHHHHHhh--hhhhhhh-HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh
Q 039062 614 RVFAC---RSATVHEEAML------AIGALAYAAG--LDFAKYM-PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE 681 (871)
Q Consensus 614 ~~l~~---~~~~~~~~a~~------~l~~l~~~~~--~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 681 (871)
+++++ .+......++. ++..++..+. +.+..++ +.++|.+...+++. -.++-..+++.+..+.- ..
T Consensus 596 k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~-~~ 673 (1010)
T KOG1991|consen 596 KVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTF-LS 673 (1010)
T ss_pred HHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhh-hh
Confidence 56664 22223333333 3344444443 2344444 45677777777643 22444444444443322 12
Q ss_pred hcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChH---HhHHHHHHHHHHHHhhcccCCCCChhHHHH
Q 039062 682 EKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFE---KYLMYAMPMLQSAADLSAHTANVDDDMTEY 758 (871)
Q Consensus 682 ~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~---~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~ 758 (871)
.++.|-.-++.+.+.+.+... ..+--..+.-++.++....+..+. .|...++.++...+..... .|+|
T Consensus 674 ~~Isp~mW~ll~li~e~~~~~--~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~---~D~d---- 744 (1010)
T KOG1991|consen 674 KEISPIMWGLLELILEVFQDD--GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENG---EDSD---- 744 (1010)
T ss_pred cccCHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCC---chHH----
Confidence 456677778888888887765 222233455566665555444443 4667777788877766411 1211
Q ss_pred HHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhH
Q 039062 759 TNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADT 824 (871)
Q Consensus 759 ~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~ 824 (871)
.+.+++.+..++..+++ .+..|++.++......+.....+.+.|..++.++-...-.
T Consensus 745 ----~~~a~kLle~iiL~~kg-----~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyy 801 (1010)
T KOG1991|consen 745 ----CESACKLLEVIILNCKG-----LLDQYIPLFLELALSRLTREVETSELRVMLLEVVINALYY 801 (1010)
T ss_pred ----HHHHHHHHHHHHHHhcC-----cHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc
Confidence 23577778788777643 4566888888777766655345666788777776554443
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.69 E-value=2.3e-13 Score=152.95 Aligned_cols=509 Identities=14% Similarity=0.156 Sum_probs=342.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhh
Q 039062 4 EVTQVLLNAQSIDGTVRKHAEESLKQFQEQ--NLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQR 81 (871)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~A~~~L~~~~~~--~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~ 81 (871)
++..++.... .+...|..|-+.|-.+... +.+.+.....+.+. +.+...|+++-+.+.....
T Consensus 8 el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~--s~~~~~Krl~yl~l~~~~~------------- 71 (526)
T PF01602_consen 8 ELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLIS--SKDLELKRLGYLYLSLYLH------------- 71 (526)
T ss_dssp HHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCS--SSSHHHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhC--CCCHHHHHHHHHHHHHHhh-------------
Confidence 4455555544 4777888888888655443 33444444444444 5588999999999877654
Q ss_pred ccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhc
Q 039062 82 WLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEE 161 (871)
Q Consensus 82 ~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~ 161 (871)
.+++..--+-+.+.+-|.++++.+|..|-.+++.+...+ -.+.+++.+.+++.++++.+|..|+.++.++...
T Consensus 72 ---~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~----~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~ 144 (526)
T PF01602_consen 72 ---EDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPE----MAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK 144 (526)
T ss_dssp ---TSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHH----HHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH
T ss_pred ---cchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccc----hhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc
Confidence 344555567778888899999999999999999987543 5688999999999999999999999999999988
Q ss_pred cCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHH
Q 039062 162 VSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFE 241 (871)
Q Consensus 162 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~ 241 (871)
. |+.+ ... +++.+.+.+. |+++.|+.+|+.++..+ ...+..+. ...+.+...+.+.+..+++..+..+++
T Consensus 145 ~-p~~~-~~~---~~~~l~~lL~--d~~~~V~~~a~~~l~~i-~~~~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~ 214 (526)
T PF01602_consen 145 D-PDLV-EDE---LIPKLKQLLS--DKDPSVVSAALSLLSEI-KCNDDSYK--SLIPKLIRILCQLLSDPDPWLQIKILR 214 (526)
T ss_dssp C-HCCH-HGG---HHHHHHHHTT--HSSHHHHHHHHHHHHHH-HCTHHHHT--THHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred C-HHHH-HHH---HHHHHhhhcc--CCcchhHHHHHHHHHHH-ccCcchhh--hhHHHHHHHhhhcccccchHHHHHHHH
Confidence 7 6554 221 6777777887 89999999999999987 22222221 233666777777778889999999999
Q ss_pred HHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhh
Q 039062 242 CLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPAL 321 (871)
Q Consensus 242 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 321 (871)
++..++...+..-.. ..+++.+...+.+.++.+...|+.++..+.... . .+...
T Consensus 215 ~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~--------------------~----~~~~~ 268 (526)
T PF01602_consen 215 LLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP--------------------E----LLQKA 268 (526)
T ss_dssp HHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH--------------------H----HHHHH
T ss_pred HHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcch--------------------H----HHHhh
Confidence 998776554443311 345666666667777788888888776553321 1 33445
Q ss_pred HHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChh
Q 039062 322 VPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPD 401 (871)
Q Consensus 322 ~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~ 401 (871)
++.+...+.. .+ .++|..+.+++..++...+..+. .....+.....+++..+|..++.++..++.. +
T Consensus 269 ~~~L~~lL~s--~~-------~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~---~ 335 (526)
T PF01602_consen 269 INPLIKLLSS--SD-------PNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE---S 335 (526)
T ss_dssp HHHHHHHHTS--SS-------HHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H---H
T ss_pred HHHHHHHhhc--cc-------chhehhHHHHHHHhhcccchhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccc---c
Confidence 6666666652 22 36888888888888776533332 1111222223377888999999999998873 3
Q ss_pred hhhHHHHHHHHHHHHHccCCC-cHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHH
Q 039062 402 KLLHIVNVALSFMLSALTKDP-NNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACG 479 (871)
Q Consensus 402 ~~~~~l~~i~~~l~~~l~~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~ 479 (871)
... .+++.+...+ .+. ++.+|..++..++.++...+. .....+..+++.+.. ++.+...++.
T Consensus 336 n~~----~Il~eL~~~l-~~~~d~~~~~~~i~~I~~la~~~~~-----------~~~~~v~~l~~ll~~~~~~~~~~~~~ 399 (526)
T PF01602_consen 336 NVK----EILDELLKYL-SELSDPDFRRELIKAIGDLAEKFPP-----------DAEWYVDTLLKLLEISGDYVSNEIIN 399 (526)
T ss_dssp HHH----HHHHHHHHHH-HHC--HHHHHHHHHHHHHHHHHHGS-----------SHHHHHHHHHHHHHCTGGGCHCHHHH
T ss_pred chh----hHHHHHHHHH-HhccchhhhhhHHHHHHHHHhccCc-----------hHHHHHHHHHHhhhhccccccchHHH
Confidence 333 3555555555 444 667999999999999988752 235566777777764 4566677777
Q ss_pred HHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 039062 480 ALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKT 559 (871)
Q Consensus 480 ~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~ 559 (871)
.+..++.+.. + .-..++..+.+.+.+.. ++.++..+++.+|......+. .. ....++..+.+.+..
T Consensus 400 ~i~~ll~~~~-----~----~~~~~l~~L~~~l~~~~--~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~- 465 (526)
T PF01602_consen 400 VIRDLLSNNP-----E----LREKILKKLIELLEDIS--SPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIE- 465 (526)
T ss_dssp HHHHHHHHST-----T----THHHHHHHHHHHHTSSS--SHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHhhcCh-----h----hhHHHHHHHHHHHHHhh--HHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhcc-
Confidence 7777776431 1 13455777777776644 567888999999999888776 11 445555555555432
Q ss_pred hhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHc--ccCcchhhhHHHHHHHH
Q 039062 560 LEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFA--CRSATVHEEAMLAIGAL 634 (871)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~--~~~~~~~~~a~~~l~~l 634 (871)
++ ..++..++.++..+....+.. ...+.+++.+..... +.+.++|+.|...+.-+
T Consensus 466 --------~~----~~vk~~ilt~~~Kl~~~~~~~--------~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 466 --------ES----PEVKLQILTALAKLFKRNPEN--------EVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp --------SH----HHHHHHHHHHHHHHHHHSCST--------THHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred --------cc----HHHHHHHHHHHHHHHhhCCch--------hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 11 246777888888888776643 123467777777777 67889999998776544
No 33
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=5.1e-13 Score=135.65 Aligned_cols=476 Identities=16% Similarity=0.197 Sum_probs=297.2
Q ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHh
Q 039062 21 KHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNT 100 (871)
Q Consensus 21 ~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~ 100 (871)
.+|.++|.+|+.. +.-|..+-+++.. ..+.....+|+..+++++. ..+..+++......|+.++..
T Consensus 2 ~~A~~~L~~FQ~S--~~aW~i~~eiL~~-~~~~~~~~FaaqTlr~Ki~-----------~~F~~Lp~~~~~slrdsl~th 67 (559)
T KOG2081|consen 2 EKANNWLGNFQKS--NDAWQICEEILSQ-KCDVEALLFAAQTLRNKIQ-----------YDFSELPPLTHASLRDSLITH 67 (559)
T ss_pred chHhHHHHHhCCC--hHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHH-----------hhHHhcCcchhHHHHHHHHHH
Confidence 5789999999998 6777777787776 4678899999999999987 466788998889999987776
Q ss_pred hc---CCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCcc--c-------
Q 039062 101 LT---STVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVV--E------- 168 (871)
Q Consensus 101 l~---~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~--~------- 168 (871)
+. +..+.+|.+.+-+++.++-+. | .|.+-+..++....+..+. .-.-++.|..+.++..+-.. +
T Consensus 68 l~~l~~~~~~i~tQL~vavA~Lal~~-~--~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~ 143 (559)
T KOG2081|consen 68 LKELHDHPDVIRTQLAVAVAALALHM-P--EWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLTVGANRRHEF 143 (559)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHh-H--hhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhhhhhhhHHHH
Confidence 55 334589999999999999876 4 8988777777766665444 33456666666555411000 0
Q ss_pred ----hhhHHHHHHHHHhhhcCCCCC-HHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhc--------------
Q 039062 169 ----QDHVNKILTAVVQGMNASEMN-NDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQ-------------- 229 (871)
Q Consensus 169 ----~~~~~~i~~~l~~~l~~~~~~-~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~-------------- 229 (871)
......++..+..++..+|.+ .+.-..+++|++++.....-..+.-.....++..++..++
T Consensus 144 ~~~l~~~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ 223 (559)
T KOG2081|consen 144 IDELAAQVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICA 223 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHH
Confidence 123444455555566544444 6777888899988765211000000000112222222222
Q ss_pred ----------------------------------cCcHHHHHHHHHHHHHHHHHhHHhhHHhH---HHHHHHHHHHhhCC
Q 039062 230 ----------------------------------SAELKIRQAAFECLVSISSTYYEKLAPYM---QDIYSITAKAVRED 272 (871)
Q Consensus 230 ----------------------------------~~~~~~~~~a~~~l~~l~~~~~~~~~~~~---~~l~~~~~~~~~~~ 272 (871)
..|.+.+...++.+..+.+.+...+...- -.+++.++-.....
T Consensus 224 ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~ 303 (559)
T KOG2081|consen 224 LLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHN 303 (559)
T ss_pred HHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCC
Confidence 23444444455555555544333222111 12344444444556
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCc---ccccccccHhHHH
Q 039062 273 EEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQ---DQEEGAWNIAMAG 349 (871)
Q Consensus 273 ~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~---~~~~~~~~~r~~a 349 (871)
+.++...++.+|..+.+.-....+. .....+++++.+++..+....+..++.+ +++.+-...|...
T Consensus 304 ~~evie~SF~fW~~lse~l~~~~~~-----------~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v 372 (559)
T KOG2081|consen 304 DTEVIEASFNFWYSLSEELTLTDDD-----------EALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKV 372 (559)
T ss_pred chhhhhhhHHhhhhhHHHHhccccH-----------HHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHH
Confidence 6678888889999887753211100 0124567888888999988887655211 2222334678888
Q ss_pred HHHHHHHHHHcCC-CcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHH
Q 039062 350 GTCLGLVARTVGD-DIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKD 428 (871)
Q Consensus 350 ~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~ 428 (871)
.+.+..++-..|+ +.+..+...+.+ +++.|+.-+|+++++..++.+..+ .-.+.++.++..+.+.- ...| +|+
T Consensus 373 ~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~-~e~~i~pevl~~i~nlp--~Q~~-~~~ 446 (559)
T KOG2081|consen 373 GDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSP-EENTIMPEVLKLICNLP--EQAP-LRY 446 (559)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCc-cccchHHHHHHHHhCCc--cchh-HHH
Confidence 8999988888864 445544444444 567899999999999999998753 22344556655544322 2233 999
Q ss_pred HHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHH
Q 039062 429 TTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSL 508 (871)
Q Consensus 429 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l 508 (871)
+++..+|.+.+|.. .++..+..++..+...+.... ....++.++..++..+... ...+.|++..++..+
T Consensus 447 ts~ll~g~~~ew~~--------~~p~~le~v~~~~~~~~~~~~-~as~~a~~~~~i~~~c~~~--~~~l~~~~~~l~~~l 515 (559)
T KOG2081|consen 447 TSILLLGEYSEWVE--------QHPELLEPVLRYIRQGLQLKR-LASAAALAFHRICSACRVQ--MTCLIPSLLELIRSL 515 (559)
T ss_pred HHHHHHHHHHHHHH--------hCcHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHH
Confidence 99999999999995 356777888888888776644 7777788888888766432 334455555555554
Q ss_pred HHhhccCChhhhhHHHHHHHHHHHHHHhcCC-CcHHHHHHH
Q 039062 509 LTVTHREDAGESRLRTAAYETLNEVVRSSTD-ETAPMVLQL 548 (871)
Q Consensus 509 ~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~l 548 (871)
.....+. ... ..+..++.++...|. +....+.++
T Consensus 516 ~~~~~~~-----e~a-~l~~~~s~i~~~lp~~k~~~~~~el 550 (559)
T KOG2081|consen 516 DSTQINE-----EAA-CLLQGISLIISNLPAHKAKIALEEL 550 (559)
T ss_pred HHHhccH-----HHH-HHHHHHHHHHhcCCHhhhhHHHHHH
Confidence 4444332 122 266777777777774 334444433
No 34
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.3e-13 Score=138.52 Aligned_cols=385 Identities=14% Similarity=0.093 Sum_probs=284.3
Q ss_pred ccHhHHHHHHHHHHHHHc-CCCc---ccchHH-HHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHH
Q 039062 343 WNIAMAGGTCLGLVARTV-GDDI---VPLVIP-FIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSA 417 (871)
Q Consensus 343 ~~~r~~a~~~l~~l~~~~-~~~~---~~~l~~-~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~ 417 (871)
|.-|++|+.-+..+...+ ...- +..+++ ...+...+++-..|.+++..+.+.+-+.+.+... |+..+++.++.+
T Consensus 14 YekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y~~~iv~Pv~~c 92 (675)
T KOG0212|consen 14 YEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-YLEKIVPPVLNC 92 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-HHHHhhHHHHHh
Confidence 445677776666666543 1111 222333 3445666777778889999999988777645444 999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCC
Q 039062 418 LTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSP 496 (871)
Q Consensus 418 l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~ 496 (871)
+ .|++.+||+.||..+.+++....++ ...+++.++..+-+...| +..|+.+| ..+..+.+...- .+.
T Consensus 93 f-~D~d~~vRyyACEsLYNiaKv~k~~-------v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVt---e~~ 160 (675)
T KOG0212|consen 93 F-SDQDSQVRYYACESLYNIAKVAKGE-------VLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVT---ESA 160 (675)
T ss_pred c-cCccceeeeHhHHHHHHHHHHhccC-------cccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhcc---ccc
Confidence 9 9999999999999999999988643 456888899888888888 45666544 456666654322 112
Q ss_pred CcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHH
Q 039062 497 LTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGEL 576 (871)
Q Consensus 497 l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~ 576 (871)
-.=.++.+++.+-..+... ++..|...++.+..+-...+-++..|++.+++.+++.+.+.. .++
T Consensus 161 ~tFsL~~~ipLL~eriy~~---n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s-------------~eV 224 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVI---NPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSS-------------DEV 224 (675)
T ss_pred cccCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCc-------------HHH
Confidence 1345778888777776655 457899999999998888888899999999999999996531 134
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhh
Q 039062 577 QGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMG 656 (871)
Q Consensus 577 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 656 (871)
+...-.+++.+...+..+. -.-..+...+.+..-++++++.++..|+..+..+++..|..+.+|++.++..++.+
T Consensus 225 r~~~~t~l~~fL~eI~s~P-----~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc 299 (675)
T KOG0212|consen 225 RTLTDTLLSEFLAEIRSSP-----SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPC 299 (675)
T ss_pred HHHHHHHHHHHHHHHhcCc-----cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccC
Confidence 4444556666666655431 11134567778888888889999999999999999999999999999999999999
Q ss_pred hcCCcchhHHHHHHHHHHHHHHHhhhccc---ccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHH
Q 039062 657 LQNFEEYQVCAVTVGVVGDICRALEEKIL---PYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMY 733 (871)
Q Consensus 657 l~~~~~~~v~~~a~~~l~~l~~~~~~~~~---~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~ 733 (871)
+.+++...++..+...-+.+.+-+++... -.+..+++.+.+.+.++ ..+.|..++..+..+-...|.++..+.+.
T Consensus 300 ~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~--~~~tri~~L~Wi~~l~~~~p~ql~~h~~~ 377 (675)
T KOG0212|consen 300 LSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD--REETRIAVLNWIILLYHKAPGQLLVHNDS 377 (675)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHhhCcchhhhhccH
Confidence 98877655666555554444444432111 23568999999999887 67889999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 039062 734 AMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQG 776 (871)
Q Consensus 734 i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~ 776 (871)
+++.+.+.+.+. + ..+-..++..+.+++++
T Consensus 378 if~tLL~tLsd~------s-------d~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 378 IFLTLLKTLSDR------S-------DEVVLLALSLLASICSS 407 (675)
T ss_pred HHHHHHHhhcCc------h-------hHHHHHHHHHHHHHhcC
Confidence 999999999875 2 23444566666666655
No 35
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=6e-14 Score=140.99 Aligned_cols=431 Identities=15% Similarity=0.173 Sum_probs=303.6
Q ss_pred HHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCcc
Q 039062 372 IEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPII 451 (871)
Q Consensus 372 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 451 (871)
+...+++.-+..|.+|..-+..+..++....-...+..++..+...+...++..-|..++-.+...+-..+ ..
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg-------~~ 77 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALG-------IK 77 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhc-------cc
Confidence 34566777788999999999888876422222334566666555544255666566666666555555554 23
Q ss_pred chhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHH
Q 039062 452 TQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETL 530 (871)
Q Consensus 452 ~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l 530 (871)
...|...++|.++.++.| +.+||..||.++.++++.. +..+.+|++.+...+.+...+.+ .++| .+.+.+
T Consensus 78 ~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~-----k~~v~~~Fn~iFdvL~klsaDsd---~~V~-~~aeLL 148 (675)
T KOG0212|consen 78 DAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVA-----KGEVLVYFNEIFDVLCKLSADSD---QNVR-GGAELL 148 (675)
T ss_pred cHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHh-----ccCcccchHHHHHHHHHHhcCCc---cccc-cHHHHH
Confidence 344999999999999998 6799999999999999865 56788999999999999988774 4666 466777
Q ss_pred HHHHHhcCCCc--HHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHH
Q 039062 531 NEVVRSSTDET--APMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQI 608 (871)
Q Consensus 531 ~~l~~~~~~~~--~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i 608 (871)
..+++.....- .=.++.++|.+-+.+.... +..|..+.+.+..+-..-+-+ +-.|.+.+
T Consensus 149 dRLikdIVte~~~tFsL~~~ipLL~eriy~~n-------------~~tR~flv~Wl~~Lds~P~~~------m~~yl~~~ 209 (675)
T KOG0212|consen 149 DRLIKDIVTESASTFSLPEFIPLLRERIYVIN-------------PMTRQFLVSWLYVLDSVPDLE------MISYLPSL 209 (675)
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHhcCC-------------chHHHHHHHHHHHHhcCCcHH------HHhcchHH
Confidence 77777655322 2245788888887776531 123444666665554332223 77899999
Q ss_pred HHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhh-hhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhccccc
Q 039062 609 MGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAK-YMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPY 687 (871)
Q Consensus 609 ~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 687 (871)
++.++++|.++..++|.-+=.+++.+.....+.-.. -.+.+++.++..+.+. ++.++..|+..+..+.+..|.++.+|
T Consensus 210 ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~l~~ 288 (675)
T KOG0212|consen 210 LDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDLLLY 288 (675)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcchhhh
Confidence 999999999999999988888888887766533222 4567888888888866 44899999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHH---hHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHH
Q 039062 688 CDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEK---YLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRN 764 (871)
Q Consensus 688 ~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~---~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~ 764 (871)
...++..++.++.+.+ ...++..+...-+.+.+-+++.... -+..++..+.+.+... ..+-|-
T Consensus 289 ~s~il~~iLpc~s~~e-~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~-------------~~~tri 354 (675)
T KOG0212|consen 289 LSGILTAILPCLSDTE-EMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD-------------REETRI 354 (675)
T ss_pred hhhhhhhcccCCCCCc-cccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc-------------hHHHHH
Confidence 9999999999998763 2246666666555566555543221 2336777777777553 245677
Q ss_pred HHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHH
Q 039062 765 GILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLN 844 (871)
Q Consensus 765 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~ 844 (871)
.+++.+..+.... +..+.-+.+.|.+.++..+.| .++++...++++++.|+..-.+ |.+.. |+..+|+
T Consensus 355 ~~L~Wi~~l~~~~-----p~ql~~h~~~if~tLL~tLsd--~sd~vvl~~L~lla~i~~s~~~---~~~~~--fl~sLL~ 422 (675)
T KOG0212|consen 355 AVLNWIILLYHKA-----PGQLLVHNDSIFLTLLKTLSD--RSDEVVLLALSLLASICSSSNS---PNLRK--FLLSLLE 422 (675)
T ss_pred HHHHHHHHHHhhC-----cchhhhhccHHHHHHHHhhcC--chhHHHHHHHHHHHHHhcCccc---ccHHH--HHHHHHH
Confidence 8888888887774 345666788999999999987 5788999999999999986432 22222 5556666
Q ss_pred HHHcCCChhhHHHHHHHHHHH
Q 039062 845 ECLSSKDHMIKESAEWARLAI 865 (871)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~ 865 (871)
.-.. +..-.+.-|...+++|
T Consensus 423 ~f~e-~~~~l~~Rg~lIIRql 442 (675)
T KOG0212|consen 423 MFKE-DTKLLEVRGNLIIRQL 442 (675)
T ss_pred HHhh-hhHHHHhhhhHHHHHH
Confidence 6654 2334445555555554
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.65 E-value=2.8e-11 Score=136.12 Aligned_cols=495 Identities=17% Similarity=0.162 Sum_probs=296.1
Q ss_pred HHHHHHHHhhcCC--chHHH-HHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccc
Q 039062 92 QIKTCLLNTLTST--VADAR-STSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVE 168 (871)
Q Consensus 92 ~i~~~ll~~l~~~--~~~vr-~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~ 168 (871)
.+.+.+-+.+.+. +..-+ .....++...... .....++..+.+.+.+.+...|.-+...+..+....
T Consensus 4 ~~~~el~~~~~~~~~~~~~~~~~l~kli~~~~~G----~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~------ 73 (526)
T PF01602_consen 4 RISQELAKILNSFKIDISKKKEALKKLIYLMMLG----YDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHED------ 73 (526)
T ss_dssp HHHHHHHHHHHCSSTHHHHHHHHHHHHHHHHHTT-------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS------
T ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC----CCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc------
Confidence 4455555666655 54333 3444444433332 244567788888888888888888888887766554
Q ss_pred hhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Q 039062 169 QDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISS 248 (871)
Q Consensus 169 ~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~ 248 (871)
.+..--+++.+.+-+. ++++.+|..|+++++++.. .+..+.+.+.+.+++.++++.+|+.|+-++..+..
T Consensus 74 ~~~~~l~~n~l~kdl~--~~n~~~~~lAL~~l~~i~~--------~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~ 143 (526)
T PF01602_consen 74 PELLILIINSLQKDLN--SPNPYIRGLALRTLSNIRT--------PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYR 143 (526)
T ss_dssp HHHHHHHHHHHHHHHC--SSSHHHHHHHHHHHHHH-S--------HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhc--CCCHHHHHHHHhhhhhhcc--------cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 2334456677778888 7999999999999999652 23457788889999999999999999999999999
Q ss_pred HhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHH
Q 039062 249 TYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEI 328 (871)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 328 (871)
..|+.+... +++.+...+.+.++.++..|+.++..+ +.. .......++.++..+.+.
T Consensus 144 ~~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~-------------------~~~~~~~~~~~~~~L~~~ 200 (526)
T PF01602_consen 144 KDPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI-KCN-------------------DDSYKSLIPKLIRILCQL 200 (526)
T ss_dssp HCHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCT-------------------HHHHTTHHHHHHHHHHHH
T ss_pred cCHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH-ccC-------------------cchhhhhHHHHHHHhhhc
Confidence 988877663 344444477888889998888887776 210 011113333333333333
Q ss_pred HhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHH
Q 039062 329 LLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVN 408 (871)
Q Consensus 329 l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~ 408 (871)
+.. .+ .|. +...+.++..++... +..... .
T Consensus 201 l~~--~~------~~~---------------------------------------q~~il~~l~~~~~~~-~~~~~~--~ 230 (526)
T PF01602_consen 201 LSD--PD------PWL---------------------------------------QIKILRLLRRYAPME-PEDADK--N 230 (526)
T ss_dssp HTC--CS------HHH---------------------------------------HHHHHHHHTTSTSSS-HHHHHH--H
T ss_pred ccc--cc------hHH---------------------------------------HHHHHHHHHhcccCC-hhhhhH--H
Confidence 211 01 132 222222222222211 010000 2
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhh
Q 039062 409 VALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQG 487 (871)
Q Consensus 409 ~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~ 487 (871)
.+++.+...+ .+.++.|+..++.++..+... ......+++.+.+.+.+ ++.++..+..+|..++..
T Consensus 231 ~~i~~l~~~l-~s~~~~V~~e~~~~i~~l~~~------------~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~ 297 (526)
T PF01602_consen 231 RIIEPLLNLL-QSSSPSVVYEAIRLIIKLSPS------------PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS 297 (526)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHSSS------------HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHh-hccccHHHHHHHHHHHHhhcc------------hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc
Confidence 3445555555 555555555555554432211 11344555555555554 445555555555555332
Q ss_pred cccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCCh
Q 039062 488 YEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSS 567 (871)
Q Consensus 488 ~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~ 567 (871)
. .+.+.. .......+...+ +..+|..+++.+..+++.. -+..+++.+.+.+.+.
T Consensus 298 ~---------~~~v~~-~~~~~~~l~~~~--d~~Ir~~~l~lL~~l~~~~------n~~~Il~eL~~~l~~~-------- 351 (526)
T PF01602_consen 298 N---------PPAVFN-QSLILFFLLYDD--DPSIRKKALDLLYKLANES------NVKEILDELLKYLSEL-------- 351 (526)
T ss_dssp C---------HHHHGT-HHHHHHHHHCSS--SHHHHHHHHHHHHHH--HH------HHHHHHHHHHHHHHHC--------
T ss_pred c---------chhhhh-hhhhhheecCCC--ChhHHHHHHHHHhhccccc------chhhHHHHHHHHHHhc--------
Confidence 1 112211 111122223222 4567777877777777642 2344555555554221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhH
Q 039062 568 DEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMP 647 (871)
Q Consensus 568 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~ 647 (871)
.+. +++..++..+..++..+.. ..+..++.++.++...+..+...+...+..++...++.- .
T Consensus 352 ~d~----~~~~~~i~~I~~la~~~~~----------~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~----~ 413 (526)
T PF01602_consen 352 SDP----DFRRELIKAIGDLAEKFPP----------DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR----E 413 (526)
T ss_dssp --H----HHHHHHHHHHHHHHHHHGS----------SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH----H
T ss_pred cch----hhhhhHHHHHHHHHhccCc----------hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhh----H
Confidence 111 3566688888888887654 356677888888887777788888888888876544322 3
Q ss_pred hHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccC-
Q 039062 648 DFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN- 726 (871)
Q Consensus 648 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~- 726 (871)
.++..+...+.+..++.++..++|++|..+....+ .. ....++..+.+.+... +..+|..++.++..+....+..
T Consensus 414 ~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~--~~~vk~~ilt~~~Kl~~~~~~~~ 489 (526)
T PF01602_consen 414 KILKKLIELLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIEE--SPEVKLQILTALAKLFKRNPENE 489 (526)
T ss_dssp HHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHHHSCSTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhccc--cHHHHHHHHHHHHHHHhhCCchh
Confidence 34555566666556668999999999998887765 11 4677788888877665 5679999999999999887753
Q ss_pred hHHhHHHHHHHHHHHHh
Q 039062 727 FEKYLMYAMPMLQSAAD 743 (871)
Q Consensus 727 ~~~~~~~i~~~l~~~l~ 743 (871)
..+ .+++.+.+...
T Consensus 490 ~~~---~i~~~~~~~~~ 503 (526)
T PF01602_consen 490 VQN---EILQFLLSLAT 503 (526)
T ss_dssp HHH---HHHHHHHCHHH
T ss_pred hHH---HHHHHHHHHhc
Confidence 323 56666666555
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=99.63 E-value=9.6e-11 Score=130.15 Aligned_cols=468 Identities=12% Similarity=0.101 Sum_probs=276.6
Q ss_pred hcCCch-HHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 039062 101 LTSTVA-DARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAV 179 (871)
Q Consensus 101 l~~~~~-~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l 179 (871)
|.+.+. ..+...-.+|+.+... ..-..+++.++.++++.+...|+-....+....+.- + +..--.++.+
T Consensus 41 L~s~~~~~kk~alKkvIa~mt~G----~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~-p-----elalLaINtl 110 (746)
T PTZ00429 41 LNGTDSYRKKAAVKRIIANMTMG----RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ-P-----EKALLAVNTF 110 (746)
T ss_pred HHCCCHHHHHHHHHHHHHHHHCC----CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-h-----HHHHHHHHHH
Confidence 345454 3444555566666543 366788999999999999888887777776654433 2 2233345667
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHH
Q 039062 180 VQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQ 259 (871)
Q Consensus 180 ~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 259 (871)
.+-+. |+++.+|..|+++++.+-. ....+.++..+.+++.++++.||+.|+-|+..+....|+.+.. .
T Consensus 111 ~KDl~--d~Np~IRaLALRtLs~Ir~--------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~ 178 (746)
T PTZ00429 111 LQDTT--NSSPVVRALAVRTMMCIRV--------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--Q 178 (746)
T ss_pred HHHcC--CCCHHHHHHHHHHHHcCCc--------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--c
Confidence 77777 8999999999999988532 2344678888889999999999999999999998877765431 1
Q ss_pred HHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccc
Q 039062 260 DIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQE 339 (871)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~ 339 (871)
.+++.+...+.+.++.+...|+..+..+.+...+ .......++.. ++..+...
T Consensus 179 ~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~----------------~l~l~~~~~~~----Ll~~L~e~------- 231 (746)
T PTZ00429 179 DFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE----------------KIESSNEWVNR----LVYHLPEC------- 231 (746)
T ss_pred chHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch----------------hhHHHHHHHHH----HHHHhhcC-------
Confidence 2233333357789999999999998888653210 01122222222 33332211
Q ss_pred cccccHhHHHHHHHHHHHHHcCC--CcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHH
Q 039062 340 EGAWNIAMAGGTCLGLVARTVGD--DIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSA 417 (871)
Q Consensus 340 ~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~ 417 (871)
++|..- ..|..++...+. .-...++..+...+++.+..+..+++.++-.+...+.++.....+..+-+.++..
T Consensus 232 -~EW~Qi----~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L 306 (746)
T PTZ00429 232 -NEWGQL----YILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL 306 (746)
T ss_pred -ChHHHH----HHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh
Confidence 127442 445555543332 1233566677777888888899998888888876543333333333344444443
Q ss_pred ccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhcccCCCCCCC
Q 039062 418 LTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGALYFLAQGYEDVGPSSPL 497 (871)
Q Consensus 418 l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~~l~~l~~~~~~~~~~~~l 497 (871)
+ ...+.+|+.++..+..+....+ ..+..-+..+.-...|...|+......|..++.. +
T Consensus 307 ~--ss~~eiqyvaLr~I~~i~~~~P-----------~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane-------~-- 364 (746)
T PTZ00429 307 S--RRDAETQYIVCKNIHALLVIFP-----------NLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTP-------S-- 364 (746)
T ss_pred h--CCCccHHHHHHHHHHHHHHHCH-----------HHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCc-------c--
Confidence 4 5677899999988877766443 2233334444444455556776666666666431 1
Q ss_pred cchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHH
Q 039062 498 TPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQ 577 (871)
Q Consensus 498 ~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 577 (871)
.+..|+..|.....+. +..++..++.++|.++...+
T Consensus 365 --Nv~~IL~EL~eYa~d~---D~ef~r~aIrAIg~lA~k~~--------------------------------------- 400 (746)
T PTZ00429 365 --VAPEILKELAEYASGV---DMVFVVEVVRAIASLAIKVD--------------------------------------- 400 (746)
T ss_pred --cHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHhCh---------------------------------------
Confidence 2344444444444333 22344445555554443322
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhh
Q 039062 578 GLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGL 657 (871)
Q Consensus 578 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 657 (871)
..+..+++.++.++..... +...++.++..+++..+... +++.+...+
T Consensus 401 -------------------------~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~------il~~L~~~~ 448 (746)
T PTZ00429 401 -------------------------SVAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL------MLDTLVTDY 448 (746)
T ss_pred -------------------------HHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH------HHHHHHHhh
Confidence 2233444444444443222 22334555555554443321 233333322
Q ss_pred --cCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccCh
Q 039062 658 --QNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENF 727 (871)
Q Consensus 658 --~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~ 727 (871)
..-.+++.+...+|.+|.++..... .+.++..+++.+... +.+||-..+.+...+....+.+.
T Consensus 449 ~~~~i~e~~AKaaiiWILGEy~~~I~~-----a~~~L~~~i~~f~~E--~~~VqlqlLta~vKlfl~~p~~~ 513 (746)
T PTZ00429 449 GADEVVEEEAKVSLLWMLGEYCDFIEN-----GKDIIQRFIDTIMEH--EQRVQLAILSAAVKMFLRDPQGM 513 (746)
T ss_pred cccccccHHHHHHHHHHHHhhHhhHhh-----HHHHHHHHHhhhccC--CHHHHHHHHHHHHHHHhcCcHHH
Confidence 2234557888889999988765432 355666666665555 56788888888888777766543
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=99.63 E-value=5.4e-11 Score=132.13 Aligned_cols=507 Identities=10% Similarity=0.059 Sum_probs=316.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhc
Q 039062 5 VTQVLLNAQSIDGTVRKHAEESLKQFQEQ--NLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRW 82 (871)
Q Consensus 5 l~~~l~~~~s~~~~~r~~A~~~L~~~~~~--~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~ 82 (871)
+.++-..+.+.+...|+.|-+.+-.+... +-..++......+. +.+..+|+++-+.+.++.+
T Consensus 34 ~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~--S~d~elKKLvYLYL~~ya~-------------- 97 (746)
T PTZ00429 34 GAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAP--STDLELKKLVYLYVLSTAR-------------- 97 (746)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcc--------------
Confidence 34455556678888888888888644432 44555555556555 4479999999999987654
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcc
Q 039062 83 LSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEV 162 (871)
Q Consensus 83 ~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~ 162 (871)
..++..--..+.+.+-+.++++.+|..|-++++.|-. | ...+.+++.+.+++.+.++.+|.+|..++.++....
T Consensus 98 --~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~---~-~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 98 --LQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV---S-SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred --cChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc---H-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC
Confidence 2344444567778888999999999888887776643 2 355678888899999999999999999999998876
Q ss_pred CCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHH
Q 039062 163 SPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFEC 242 (871)
Q Consensus 163 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~ 242 (871)
|+.+. ...+++.+...+. |.++.|...|+.++..+....+..+. .....+..++..+.+-++..+...+++
T Consensus 172 -pelv~---~~~~~~~L~~LL~--D~dp~Vv~nAl~aL~eI~~~~~~~l~---l~~~~~~~Ll~~L~e~~EW~Qi~IL~l 242 (746)
T PTZ00429 172 -MQLFY---QQDFKKDLVELLN--DNNPVVASNAAAIVCEVNDYGSEKIE---SSNEWVNRLVYHLPECNEWGQLYILEL 242 (746)
T ss_pred -ccccc---ccchHHHHHHHhc--CCCccHHHHHHHHHHHHHHhCchhhH---HHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 65441 1234445555566 89999999999999997654332211 112234445555554455566666666
Q ss_pred HHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhH
Q 039062 243 LVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALV 322 (871)
Q Consensus 243 l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (871)
+.. ..|.. ......+++.+...+++.++.+...|+.++..+.... .+...+..+..+.
T Consensus 243 L~~---y~P~~-~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~------------------~~~~~~~~~~rl~ 300 (746)
T PTZ00429 243 LAA---QRPSD-KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC------------------SQELIERCTVRVN 300 (746)
T ss_pred HHh---cCCCC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC------------------CHHHHHHHHHHHH
Confidence 643 22211 2223467777777888888999999988876664310 0123333344444
Q ss_pred HHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhh
Q 039062 323 PLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDK 402 (871)
Q Consensus 323 ~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~ 402 (871)
+.++..+. .+ -+++..+...+..+....+.-+.+. +..+-...+++. .+|...+.++..++....
T Consensus 301 ~pLv~L~s---s~-------~eiqyvaLr~I~~i~~~~P~lf~~~-~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~N--- 365 (746)
T PTZ00429 301 TALLTLSR---RD-------AETQYIVCKNIHALLVIFPNLLRTN-LDSFYVRYSDPP-FVKLEKLRLLLKLVTPSV--- 365 (746)
T ss_pred HHHHHhhC---CC-------ccHHHHHHHHHHHHHHHCHHHHHHH-HHhhhcccCCcH-HHHHHHHHHHHHHcCccc---
Confidence 44444432 11 2567777777877777665433332 222222334554 589999999998887532
Q ss_pred hhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCChHHHHHHHHHHH
Q 039062 403 LLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGALY 482 (871)
Q Consensus 403 ~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~~l~ 482 (871)
+..++..+..+. .+.+..++..++.++|+++..++ .....++..|++.+.+...+...++..+.
T Consensus 366 ----v~~IL~EL~eYa-~d~D~ef~r~aIrAIg~lA~k~~-----------~~a~~cV~~Ll~ll~~~~~~v~e~i~vik 429 (746)
T PTZ00429 366 ----APEILKELAEYA-SGVDMVFVVEVVRAIASLAIKVD-----------SVAPDCANLLLQIVDRRPELLPQVVTAAK 429 (746)
T ss_pred ----HHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHHhCh-----------HHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 345667777788 88888999999999999997664 34667888888887764444445677777
Q ss_pred HHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhc
Q 039062 483 FLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEG 562 (871)
Q Consensus 483 ~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 562 (871)
.+.+... +. + ++..++..+......++..|.+.++.+|.+....+. ...++..+++.+..
T Consensus 430 ~IlrkyP-----~~---~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-----a~~~L~~~i~~f~~---- 489 (746)
T PTZ00429 430 DIVRKYP-----EL---L---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-----GKDIIQRFIDTIME---- 489 (746)
T ss_pred HHHHHCc-----cH---H---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-----HHHHHHHHHhhhcc----
Confidence 7766432 11 1 344444433111222667888889999988775542 22333333332211
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHH-c-ccCcchhhhHHHHHHHH
Q 039062 563 QKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVF-A-CRSATVHEEAMLAIGAL 634 (871)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l-~-~~~~~~~~~a~~~l~~l 634 (871)
++. .++..++.+...+.-..+.+ ....+..++..+ + +.++++|..|+..+.-+
T Consensus 490 -----E~~----~VqlqlLta~vKlfl~~p~~----------~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 490 -----HEQ----RVQLAILSAAVKMFLRDPQG----------MEPQLNRVLETVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred -----CCH----HHHHHHHHHHHHHHhcCcHH----------HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 122 35555555555554433322 234455555433 3 35668999998776654
No 39
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=7.5e-14 Score=143.18 Aligned_cols=399 Identities=16% Similarity=0.166 Sum_probs=270.2
Q ss_pred hhhcCCChhhHHHHHHHHHHhhcCCChhhhhHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccc
Q 039062 374 ENIAKPDWRQREAATYAFGSILEGPSPDKLLHI-VNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIIT 452 (871)
Q Consensus 374 ~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~-l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 452 (871)
..+.+.+...+..+...+..+.+......+..- -..++|.++..+..+.+|.++..|.|+|.+++...... ..
T Consensus 73 ~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~------T~ 146 (514)
T KOG0166|consen 73 AALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ------TK 146 (514)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh------cc
Confidence 444555556677777777766654321112222 24788888888834788999999999999999865421 11
Q ss_pred hhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchH--HHHHHHHHHhhccCChhhhhHHHHHHHH
Q 039062 453 QANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFF--QEIVQSLLTVTHREDAGESRLRTAAYET 529 (871)
Q Consensus 453 ~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~--~~il~~l~~~l~~~~~~~~~vr~~a~~~ 529 (871)
...-...+|.+++.+.+ +..|++.|.|+|++++.. +..+..|+ ..++..|+..+...+ .-.....+..+
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagd------s~~~Rd~vl~~g~l~pLl~~l~~~~--~~~~lRn~tW~ 218 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGD------SPDCRDYVLSCGALDPLLRLLNKSD--KLSMLRNATWT 218 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccC------ChHHHHHHHhhcchHHHHHHhcccc--chHHHHHHHHH
Confidence 12223578889999886 789999999999999642 33444444 245666777766654 22456689999
Q ss_pred HHHHHHhc-CCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhH-HH
Q 039062 530 LNEVVRSS-TDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYA-DQ 607 (871)
Q Consensus 530 l~~l~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~ 607 (871)
+..++... |..-...+..++|.+...+... |. ++...+|++++++...-... +.-.. ..
T Consensus 219 LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~---------D~----~Vl~Da~WAlsyLsdg~ne~------iq~vi~~g 279 (514)
T KOG0166|consen 219 LSNLCRGKNPSPPFDVVAPILPALLRLLHST---------DE----EVLTDACWALSYLTDGSNEK------IQMVIDAG 279 (514)
T ss_pred HHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC---------CH----HHHHHHHHHHHHHhcCChHH------HHHHHHcc
Confidence 99999988 4445677889999999888653 22 45677999999998643322 33233 36
Q ss_pred HHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh-HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccc
Q 039062 608 IMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM-PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILP 686 (871)
Q Consensus 608 i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 686 (871)
+++.+..+|...+..++..|+.++|.++...+..-...+ ...+|.+...+.......+++.|+|++++|...-.+++..
T Consensus 280 vv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqa 359 (514)
T KOG0166|consen 280 VVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQA 359 (514)
T ss_pred chHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHH
Confidence 789999999999999999999999999877665444444 4588888888875555579999999999998865555555
Q ss_pred cH-HHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHH--HHHHHHHHHhhcccCCCCChhHHHHHHHHH
Q 039062 687 YC-DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMY--AMPMLQSAADLSAHTANVDDDMTEYTNSLR 763 (871)
Q Consensus 687 ~~-~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~--i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r 763 (871)
.+ ..++|.|+..+++. +..+|..|++++++++.....+-..|+-. +++.+...+... | ..+-
T Consensus 360 Vida~l~p~Li~~l~~~--ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~------D-------~~ii 424 (514)
T KOG0166|consen 360 VIDANLIPVLINLLQTA--EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCP------D-------VKII 424 (514)
T ss_pred HHHcccHHHHHHHHhcc--chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCC------C-------hHHH
Confidence 44 58999999999988 57899999999999888766555555432 566666666433 3 2234
Q ss_pred HHHHHHHHHHhhhccCCccc--cccccchHHH--HHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 039062 764 NGILEAYSGIFQGFKNSPKT--QLLIPYAPHI--LQFLDSMYMEKDMDELVMKTAIGLLGDLA 822 (871)
Q Consensus 764 ~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~i--~~~l~~~~~~~~~~~~~r~~a~~~l~~i~ 822 (871)
..+++++..+++........ .....+++.+ +..+.. +..+ .++++...|+..+..-.
T Consensus 425 ~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~-LQ~h-en~~Iy~~A~~II~~yf 485 (514)
T KOG0166|consen 425 LVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIEN-LQSH-ENEEIYKKAYKIIDTYF 485 (514)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHH-hhcc-ccHHHHHHHHHHHHHhc
Confidence 45777777777653221000 1122222221 222222 3332 46788888887776543
No 40
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.56 E-value=8.1e-11 Score=128.94 Aligned_cols=544 Identities=14% Similarity=0.116 Sum_probs=356.6
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCc-hHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccch
Q 039062 91 TQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQW-PELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQ 169 (871)
Q Consensus 91 ~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~-~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 169 (871)
..+-+.+.+.. +....+...+|.-++.+....+. ..+ .-+++.+..........+|+.+++.+..+.... ++.
T Consensus 120 ~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~-~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~-~~~--- 193 (759)
T KOG0211|consen 120 LELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGG-PEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGL-PKE--- 193 (759)
T ss_pred hhhhhHHHHhc-cchhHHHHHHHHHhcccchhccc-hhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-ChH---
Confidence 34444455555 45568888888888888776544 233 335556666666666778999999998887776 322
Q ss_pred hhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Q 039062 170 DHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISST 249 (871)
Q Consensus 170 ~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 249 (871)
.....+++.+..... +.--.-|..+...++......+. ...+..+.+...++.++..+.+|..+..-+..+++.
T Consensus 194 ~~~~~lv~l~~~l~~--~d~~~sr~sacglf~~~~~~~~~----~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~ 267 (759)
T KOG0211|consen 194 KLREHLVPLLKRLAT--GDWFQSRLSACGLFGKLYVSLPD----DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKV 267 (759)
T ss_pred HHHHHHHHHHHHccc--hhhhhcchhhhhhhHHhccCCCh----HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHH
Confidence 123444444443333 22223456666777665433221 234466778888888899999999999999999887
Q ss_pred hHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHH
Q 039062 250 YYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEIL 329 (871)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 329 (871)
.+.. .....+.+.......++...+|..|++....+.+... ... .....+.+.+++.
T Consensus 268 ~~~~--~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~-----------------~~~---d~~~~~~~~l~~~- 324 (759)
T KOG0211|consen 268 LESE--IVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD-----------------DDD---DVVKSLTESLVQA- 324 (759)
T ss_pred HHHH--HHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC-----------------Cch---hhhhhhhHHHHHH-
Confidence 6552 1122345555556667778899999888777655310 000 1122233444332
Q ss_pred hcccCCcccccccccHhHHHHHHHHHHHHHcCC-CcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChh-hhhHHH
Q 039062 330 LKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGD-DIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPD-KLLHIV 407 (871)
Q Consensus 330 ~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~l 407 (871)
.+ +..|.+|....+....+...+|. ...+...+.....+.+..|..|++...-...+....... ...-..
T Consensus 325 ---~~-----d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~ 396 (759)
T KOG0211|consen 325 ---VE-----DGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPD 396 (759)
T ss_pred ---hc-----ChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccch
Confidence 12 23488988888888888888764 445677777778889999999999887777766653211 111123
Q ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHh
Q 039062 408 NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQ 486 (871)
Q Consensus 408 ~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~ 486 (871)
+.++|.+.... .|.++.||.+.+..+.......+ ....+..++|.+...++| .+.|+....+.+..+-.
T Consensus 397 ~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~---------k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~ 466 (759)
T KOG0211|consen 397 SSILPEVQVLV-LDNALHVRSALASVITGLSPILP---------KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEE 466 (759)
T ss_pred hhhhHHHHHHH-hcccchHHHHHhccccccCccCC---------cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHh
Confidence 55688888888 99999999988776555444332 234556778888888887 78999888876644432
Q ss_pred hcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCC
Q 039062 487 GYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLS 566 (871)
Q Consensus 487 ~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~ 566 (871)
. .+ ...+.-+-+..++.+........ -++|.+.++.+-.++...+. +++..-+..++..|-
T Consensus 467 v-~~---v~g~~~~s~slLp~i~el~~d~~---wRvr~ail~~ip~la~q~~~---~~~~~~~~~l~~~~l--------- 527 (759)
T KOG0211|consen 467 V-ND---VIGISTVSNSLLPAIVELAEDLL---WRVRLAILEYIPQLALQLGV---EFFDEKLAELLRTWL--------- 527 (759)
T ss_pred c-cC---cccchhhhhhhhhhhhhhccchh---HHHHHHHHHHHHHHHHhhhh---HHhhHHHHHHHHhhh---------
Confidence 2 21 22334455566666666555443 37888888888888887763 233222333333321
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh
Q 039062 567 SDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM 646 (871)
Q Consensus 567 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l 646 (871)
.+....++.++..++..++..+|.+ -+...+++.++....+++...|...+.++..++..+|..+. .
T Consensus 528 ---~d~v~~Ir~~aa~~l~~l~~~~G~~--------w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~--~ 594 (759)
T KOG0211|consen 528 ---PDHVYSIREAAARNLPALVETFGSE--------WARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEIT--C 594 (759)
T ss_pred ---hhhHHHHHHHHHHHhHHHHHHhCcc--------hhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHH--H
Confidence 1112357888999999999999944 34567788888887777788999999999999999998764 6
Q ss_pred HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhc
Q 039062 647 PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG 724 (871)
Q Consensus 647 ~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~ 724 (871)
..++|.+.....+. .++||..++..+..+.+.+..... -..+.+.+..+.+++ +.++|..+..+++.+....-
T Consensus 595 ~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~~L~~~~~--~~~v~pll~~L~~d~--~~dvr~~a~~a~~~i~l~~~ 667 (759)
T KOG0211|consen 595 EDLLPVFLDLVKDP-VANVRINVAKHLPKILKLLDESVR--DEEVLPLLETLSSDQ--ELDVRYRAILAFGSIELSRL 667 (759)
T ss_pred HHHhHHHHHhccCC-chhhhhhHHHHHHHHHhhcchHHH--HHHHHHHHHHhccCc--ccchhHHHHHHHHHHHHHHH
Confidence 67788887776655 558999999999998887764222 134555555554555 67899999999988876643
No 41
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=3.9e-12 Score=130.78 Aligned_cols=359 Identities=18% Similarity=0.258 Sum_probs=247.0
Q ss_pred HHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccc
Q 039062 262 YSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEG 341 (871)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~ 341 (871)
.+.....+.+++...+..+...+..+...+ ..+ ..-.-.-..++|.++..+...+ .
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~------------~~p-----pi~~vi~~G~v~~lV~~l~~~~-~------ 123 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKE------------RNP-----PIDEVIQSGVVPRLVEFLSRDD-N------ 123 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccC------------CCC-----CHHHHHHcCcHHHHHHHHccCC-C------
Confidence 444445666777777777766655554422 011 1111222356777777776322 1
Q ss_pred cccHhHHHHHHHHHHHHHcCC---Ccc-cchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH--HHHHHHHH
Q 039062 342 AWNIAMAGGTCLGLVARTVGD---DIV-PLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV--NVALSFML 415 (871)
Q Consensus 342 ~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l--~~i~~~l~ 415 (871)
-.++..|+.+|-.++....+ .++ ....|.+...+.+++-.+|+-|++++|.++... ..+..++ ..+++.++
T Consensus 124 -~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds--~~~Rd~vl~~g~l~pLl 200 (514)
T KOG0166|consen 124 -PTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDS--PDCRDYVLSCGALDPLL 200 (514)
T ss_pred -hhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCC--hHHHHHHHhhcchHHHH
Confidence 15688889999888875432 122 345666778889999999999999999999874 3455554 45677788
Q ss_pred HHccCCCcH-HHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCC
Q 039062 416 SALTKDPNN-HVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGP 493 (871)
Q Consensus 416 ~~l~~d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~ 493 (871)
..+ ..+.+ .....+.|+|++++..... .-.-.....++|.|...+.. ++.|...|||++..+.++-.
T Consensus 201 ~~l-~~~~~~~~lRn~tW~LsNlcrgk~P------~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n---- 269 (514)
T KOG0166|consen 201 RLL-NKSDKLSMLRNATWTLSNLCRGKNP------SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSN---- 269 (514)
T ss_pred HHh-ccccchHHHHHHHHHHHHHHcCCCC------CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh----
Confidence 888 66665 5567788999999998731 23456788999999999986 78999999999999976421
Q ss_pred CCCCcchH-HHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHhhhccCCChhhHH
Q 039062 494 SSPLTPFF-QEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMV-LQLVPVIMMELHKTLEGQKLSSDERE 571 (871)
Q Consensus 494 ~~~l~~~~-~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ 571 (871)
+.+.-.+ -.+++.++.++...+ .+++..|+.++|.++..........+ ...+|.+...+..+ ..
T Consensus 270 -e~iq~vi~~gvv~~LV~lL~~~~---~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s-------~~--- 335 (514)
T KOG0166|consen 270 -EKIQMVIDAGVVPRLVDLLGHSS---PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS-------PK--- 335 (514)
T ss_pred -HHHHHHHHccchHHHHHHHcCCC---cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC-------cc---
Confidence 2222111 255677888888764 47888999999998776654333322 46667777666532 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhH-HHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh--Hh
Q 039062 572 KQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYA-DQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM--PD 648 (871)
Q Consensus 572 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~ 648 (871)
..++..+|+++++|...-... ...+. ..+++.++++++..+..+|.+|..+++.++....+.-..|+ ..
T Consensus 336 --~~ikkEAcW~iSNItAG~~~q------iqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~g 407 (514)
T KOG0166|consen 336 --ESIKKEACWTISNITAGNQEQ------IQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQG 407 (514)
T ss_pred --hhHHHHHHHHHHHhhcCCHHH------HHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcC
Confidence 135667999999998632221 33333 48899999999999999999999999999877666666676 34
Q ss_pred HHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh
Q 039062 649 FYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE 681 (871)
Q Consensus 649 i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 681 (871)
+++.+...|.-. +.++...++..+..+.+...
T Consensus 408 iI~plcdlL~~~-D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 408 IIKPLCDLLTCP-DVKIILVALDGLENILKVGE 439 (514)
T ss_pred CchhhhhcccCC-ChHHHHHHHHHHHHHHHHHH
Confidence 788888887544 44677788888888877655
No 42
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.47 E-value=7.7e-08 Score=103.44 Aligned_cols=680 Identities=13% Similarity=0.093 Sum_probs=365.9
Q ss_pred HHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCC--ChHHHHHHHHHHHHHhhcc-CC--------Cc
Q 039062 98 LNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQL--PAHVKQATLETLGYLCEEV-SP--------DV 166 (871)
Q Consensus 98 l~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~--~~~~r~~al~~l~~l~~~~-~~--------~~ 166 (871)
+....++++.+|..|..-+.... ..+++-..|.+...+. +-..|..|+..|.+..+.. ++ ..
T Consensus 10 L~~~ls~d~~vr~~AE~~l~qle-------~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~ 82 (1005)
T KOG2274|consen 10 LSGSLSADQNVRSQAETQLKQLE-------LTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLI 82 (1005)
T ss_pred HHhhcCCChhHHHHHHHHHhccc-------cchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCc
Confidence 34455678888887765544332 3344666677766655 4467888888887766653 11 11
Q ss_pred cchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 039062 167 VEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSI 246 (871)
Q Consensus 167 ~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l 246 (871)
.+.+....|-..+.+.+- +++..+|.++.-+++.++.+ +..+.|+++++.+..++.+.+..-...|+++|..+
T Consensus 83 ~~e~~K~~IRe~Ll~~l~--~sn~ki~~~vay~is~Ia~~-----D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el 155 (1005)
T KOG2274|consen 83 VSEEVKALIREQLLNLLD--DSNSKIRSAVAYAISSIAAV-----DYPDEWPELVPFILKLLSSGNENSIHGAMRVLAEL 155 (1005)
T ss_pred ccHHHHHHHHHHHHhhhh--ccccccchHHHHHHHHHHhc-----cCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHH
Confidence 111223334445666666 78889999999888887653 22446799999999999988888888999999988
Q ss_pred HHHhHHhhH-----HhHHHHHHHHHHHhhCCChhHHHHHH--HHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhh
Q 039062 247 SSTYYEKLA-----PYMQDIYSITAKAVREDEEPVALQAI--EFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALP 319 (871)
Q Consensus 247 ~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~a~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (871)
....-..-. ..+..+... +..........+..+. ..+...... .....++ .....+.++.
T Consensus 156 ~~ev~~ee~~~~~~~~l~~m~~~-f~~~~~~s~~~~~~aa~~~lf~sc~~l-i~~~~e~-----------~~~~~~~~~s 222 (1005)
T KOG2274|consen 156 SDEVDVEEMFFVGPVSLAEMYRI-FALTIVYSIITRLGAARGKLFTSCLTL-ITNVEEV-----------WAEHVKVFLS 222 (1005)
T ss_pred HHHHHHHHHhcccccchhhhhhh-hhhccccchhHHHHhhhhHHHHHHHHH-HhHHHHH-----------HHHHHHHHHH
Confidence 765321111 111222111 1111222222333322 222211110 0111111 0122333333
Q ss_pred hhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCc-------ccchHHHHHh--------hhcC--CChh
Q 039062 320 ALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDI-------VPLVIPFIEE--------NIAK--PDWR 382 (871)
Q Consensus 320 ~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~-------~~~l~~~l~~--------~l~~--~~~~ 382 (871)
.+++...+.+...-.-.+ -+.|..|....+++..+.+.++... ++.++..+.+ ..+. .+..
T Consensus 223 ~~l~~~~~~l~h~l~~~~--g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~ 300 (1005)
T KOG2274|consen 223 QILNQFMDILEHPLQRND--GSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYD 300 (1005)
T ss_pred HHHHHHHHHHhhhhcccc--cchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcc
Confidence 444433333221111011 1337888888888888888876433 2222222221 1111 0111
Q ss_pred -------hHH----HHHHHHHHhhcCCCh----hhhhHHHHHHHHHHHHHc----------c-------CCC--cHHHHH
Q 039062 383 -------QRE----AATYAFGSILEGPSP----DKLLHIVNVALSFMLSAL----------T-------KDP--NNHVKD 428 (871)
Q Consensus 383 -------~r~----~a~~~l~~l~~~~~~----~~~~~~l~~i~~~l~~~l----------~-------~d~--~~~vr~ 428 (871)
.++ ..+.+++.+..-+.- +.+...++.++..+...+ . .|+ ...+|.
T Consensus 301 ~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~ 380 (1005)
T KOG2274|consen 301 ARYDSDPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARI 380 (1005)
T ss_pred cccCCchhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhh
Confidence 111 111111111111100 111111222222222111 0 111 123444
Q ss_pred HHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhcc---------C--ChHHHHHHHHHHHHHHhhcccCCCCCCC
Q 039062 429 TTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMK---------D--TPNVAEKACGALYFLAQGYEDVGPSSPL 497 (871)
Q Consensus 429 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~---------d--~~~v~~~a~~~l~~l~~~~~~~~~~~~l 497 (871)
.+...+-.+...++. ..+..+....-+.+. . .|+.+++..++...+- .....
T Consensus 381 ~~rd~~~~v~~~f~~----------~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~-------~~~~~ 443 (1005)
T KOG2274|consen 381 SVRDLLLEVITTFGN----------EGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVR-------IDDAN 443 (1005)
T ss_pred hHHHHHHHHHHhccc----------hhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcc-------cCcch
Confidence 444444444444432 222333333222221 1 2455555555443331 12334
Q ss_pred cchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHH
Q 039062 498 TPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQ 577 (871)
Q Consensus 498 ~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 577 (871)
..++..++..+...+...+ .+.+-..++.+++.+.+.... ..+....++....+.+. .+++. -++
T Consensus 444 dd~l~~l~~~~~~~l~~~e--~P~Ll~Ra~~~i~~fs~~~~~-~~~~~~~fl~~~v~~l~---------~~~~~---~~k 508 (1005)
T KOG2274|consen 444 DDKLIELTIMIDNGLVYQE--SPFLLLRAFLTISKFSSSTVI-NPQLLQHFLNATVNALT---------MDVPP---PVK 508 (1005)
T ss_pred HHHHHHHHHHHHhhccccc--CHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhhc---------cCCCC---chh
Confidence 4556666666666665544 334444788888877666432 12233333333333332 12221 233
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh-HhHHHHHHhh
Q 039062 578 GLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM-PDFYKYLEMG 656 (871)
Q Consensus 578 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~ 656 (871)
..++.++...+ +.. .+.+..+.++..++++....+.++-...+++|+.+++.-+ .+.... ..++|..+..
T Consensus 509 i~a~~~~~~~~---~~~-----vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dp-ef~as~~skI~P~~i~l 579 (1005)
T KOG2274|consen 509 ISAVRAFCGYC---KVK-----VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDP-EFAASMESKICPLTINL 579 (1005)
T ss_pred HHHHHHHHhcc---Cce-----eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccCh-hhhhhhhcchhHHHHHH
Confidence 44555444443 333 2677889999999999988888888888999998887654 343333 4466655444
Q ss_pred -hcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCC--CCCcCCchHHHHHHHHHHhhccChH-HhHH
Q 039062 657 -LQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQ--LHRSVKPPIFSCFGDIALAIGENFE-KYLM 732 (871)
Q Consensus 657 -l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~~v~~~~~~~l~~i~~~~~~~~~-~~~~ 732 (871)
++..+++.+...+-.++..+++. .....|+....+|.++..+..+. .....-.-++..+..+.++.++.+. -.+.
T Consensus 580 F~k~s~DP~V~~~~qd~f~el~q~-~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~ 658 (1005)
T KOG2274|consen 580 FLKYSEDPQVASLAQDLFEELLQI-AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC 658 (1005)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH
Confidence 34456777777777777777773 24556777888999999887663 1233444567777778888877755 3567
Q ss_pred HHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhh----ccCCccccccccchHHHHHHHHHHhcCCCCCH
Q 039062 733 YAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQG----FKNSPKTQLLIPYAPHILQFLDSMYMEKDMDE 808 (871)
Q Consensus 733 ~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 808 (871)
..+|.+.++.-.. |+ .+.-+..-+|+.+++.. +..-...+.+. +..|+..+.+++. ++.++
T Consensus 659 ~~FpaVak~tlHs------dD------~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~--~~yImqV~sqLLd-p~~sd 723 (1005)
T KOG2274|consen 659 YAFPAVAKITLHS------DD------HETLQNATECLRALISVTLEQLLTWHDEPGHN--LWYIMQVLSQLLD-PETSD 723 (1005)
T ss_pred HHhHHhHhheeec------CC------hHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc--HHHHHHHHHHHcC-Cccch
Confidence 7888888887443 22 12223455666666554 11100111111 3357777777664 45666
Q ss_pred HHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHH
Q 039062 809 LVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAI 865 (871)
Q Consensus 809 ~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 865 (871)
..-..+-.++-.++..+|++.+|.++++ ...++.++.+-+...+-++=..++.||
T Consensus 724 s~a~~VG~lV~tLit~a~~el~~n~d~I--L~Avisrmq~ae~lsviQsLi~VfahL 778 (1005)
T KOG2274|consen 724 SAAAFVGPLVLTLITHASSELGPNLDQI--LRAVISRLQQAETLSVIQSLIMVFAHL 778 (1005)
T ss_pred hHHHHHhHHHHHHHHHHHHHhchhHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6666778888888889999999999884 888999999878888888888887775
No 43
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=7e-07 Score=99.59 Aligned_cols=705 Identities=13% Similarity=0.130 Sum_probs=361.6
Q ss_pred HHHHHHHHhhc--CCchHHHHHHHHHHHHHHhhhcCCCCch--HHH---HHHHHhhcCCChHHHHHHHHHHHHHhhccCC
Q 039062 92 QIKTCLLNTLT--STVADARSTSSQVIAKVAGIELPQKQWP--ELI---VSLLSNVHQLPAHVKQATLETLGYLCEEVSP 164 (871)
Q Consensus 92 ~i~~~ll~~l~--~~~~~vr~~~a~~l~~i~~~~~~~~~~~--~ll---~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~ 164 (871)
.+.+.+...+. +.+..|++.+..|++.+.+.- .-..|. .-. ..+....-+..+.+|..|.+++..+...- +
T Consensus 93 ~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQ-d~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p-~ 170 (1176)
T KOG1248|consen 93 DTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQ-DASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGP-P 170 (1176)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHc-chhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCC-C
Confidence 44555555555 556899999999999998763 113663 233 33333345668899999999998887652 1
Q ss_pred CccchhhHH--HHHHHHHhhhcCCCCCHHHHHHHHH---HHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHH
Q 039062 165 DVVEQDHVN--KILTAVVQGMNASEMNNDVRLAATR---ALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAA 239 (871)
Q Consensus 165 ~~~~~~~~~--~i~~~l~~~l~~~~~~~~vr~~al~---~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a 239 (871)
--....|-. .....+++.+.+ .-........++ .+...+.. |. ....+.+-..+.......+..++..+
T Consensus 171 ~~~~~~HpA~~~vak~cl~~~e~-~~~~a~~t~v~~~L~Ll~~~~~~----~p-~~li~sl~e~lL~i~~~s~v~v~~~~ 244 (1176)
T KOG1248|consen 171 FAPDAEHPASLSVAKFCLALIES-KLGSAENTTVLRSLMLLRDVLST----FP-RPLIKSLCEVLLNITTESPVLVLLEV 244 (1176)
T ss_pred CCccccchHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHhhcc----CC-HHHHHHHHHHHHhhcccchHHHHHHH
Confidence 111111211 111122222221 111111122222 22222211 11 11224455566666677788899999
Q ss_pred HHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhh
Q 039062 240 FECLVSISSTYYEKLAPYMQ-DIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQAL 318 (871)
Q Consensus 240 ~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (871)
++|+-.+....+..+..... .++..+...--+.. .....-.|..+........-.. .....-..+
T Consensus 245 ~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~---D~~~t~~W~~v~~~~~~~la~~-----------q~~~~~~~~ 310 (1176)
T KOG1248|consen 245 LQCLHSLFKKHPTALAAELNARLLTALMTLSPSEN---DDLLTVAWLKVLNEAHDILATL-----------QEEKALQAL 310 (1176)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCcc---chHHHHHHHHHHHHHHHHHHHh-----------CHHHHHHhh
Confidence 99999999887764333222 22222222211222 2222344555444322211000 011233345
Q ss_pred hhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHH-HHhhhc---CCChhhHHHHHHHHHHh
Q 039062 319 PALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPF-IEENIA---KPDWRQREAATYAFGSI 394 (871)
Q Consensus 319 ~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~-l~~~l~---~~~~~~r~~a~~~l~~l 394 (871)
|.+++.++..+.. +. -.+-.++.+++..+.+.... +.+.+-.. +...++ +.-|+ .++.++..+
T Consensus 311 ~~~~~~~~t~~~s---~~------~e~~q~a~q~l~~il~~sv~-~~~~~c~~~~~~~l~~kf~~~~~---~ilqi~s~~ 377 (1176)
T KOG1248|consen 311 PRLFSLFFTILES---LI------EELVQAASQSLKEILKESVT-VIDALCSKQLHSLLDYKFHAVWR---FILQILSAL 377 (1176)
T ss_pred hhhhhHHHHHHhc---cc------HHHHHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHcchHHHHHH---HHHHHHHHH
Confidence 5666666653221 11 12344555666555443322 22222222 222221 11122 234456666
Q ss_pred hcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccC------------CCCC--------------
Q 039062 395 LEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGS------------TIGT-------------- 448 (871)
Q Consensus 395 ~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~------------~~~~-------------- 448 (871)
.+.|+ +...+++...+..+-..= .+++..-+...=.++|.....++.+ .+.+
T Consensus 378 fek~G-~~s~~~l~~~L~~l~~lr-~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~~RsWLLPvLR~~i 455 (1176)
T KOG1248|consen 378 FEKCG-ELSGPELTKTLEGLCDLR-ASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLSFTRSWLLPVLRDYI 455 (1176)
T ss_pred HHHhh-hhcCHHHHHHHHHHHHhh-cCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhccccccccchhHhHHHHHHhh
Confidence 66665 344455544444433221 2232222222222222222222100 0000
Q ss_pred -CccchhhHHHHHHHHHHhcc------C---ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChh
Q 039062 449 -PIITQANCQQIITVLLQSMK------D---TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAG 518 (871)
Q Consensus 449 -~~~~~~~~~~il~~l~~~l~------d---~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~ 518 (871)
...-.-|.+.++|...+... + +..+-...++-|..+..+++.. +-.+..-+..+-..+...+...
T Consensus 456 ~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~--P~Dl~~sF~~la~~l~~al~~~--- 530 (1176)
T KOG1248|consen 456 IGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNY--PVDLAESFTDLAPILGAALLKR--- 530 (1176)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCC--CccHHHHHHHHHHHHHHHHhcc---
Confidence 00112233334443332211 1 1225555666666666666554 5666666777888888777653
Q ss_pred hhhHHHHHHHHHHHHHHhcC---------CCcHHHHHHHHHHHHHHHHHhhhccCCChhhHH----HHH-----------
Q 039062 519 ESRLRTAAYETLNEVVRSST---------DETAPMVLQLVPVIMMELHKTLEGQKLSSDERE----KQG----------- 574 (871)
Q Consensus 519 ~~~vr~~a~~~l~~l~~~~~---------~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~----~~~----------- 574 (871)
+.+|...+.+|..++.... +....+...++|.+++...+..... -+... .+.
T Consensus 531 -~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~---~~~l~~~~~~L~~i~~~~~~~t~ 606 (1176)
T KOG1248|consen 531 -PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAG---RKILASRSTVLEIIRVDYFTVTP 606 (1176)
T ss_pred -hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccc---cccHHHHHHHHHHHHHHHhhccc
Confidence 4789999999999999851 1245677889999998877642110 00000 000
Q ss_pred -HHHHHHHHHHHHHHHHhCCCCCch------h---hhhh-----hHHHHHHHHHHHHcc-cCcchhhhHHHHHHHHHHH-
Q 039062 575 -ELQGLLCGCLQVIIQKLGSSEPTK------Y---VFMQ-----YADQIMGLFLRVFAC-RSATVHEEAMLAIGALAYA- 637 (871)
Q Consensus 575 -~~~~~~~~~l~~l~~~~~~~~~~~------~---~~~~-----~~~~i~~~l~~~l~~-~~~~~~~~a~~~l~~l~~~- 637 (871)
++.....+.++.++.......... + .+.+ .+..++ .+..-.+. .+..++..++..|..++..
T Consensus 607 ~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~ 685 (1176)
T KOG1248|consen 607 TDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSP 685 (1176)
T ss_pred HHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 011111111111111110000000 0 0000 111122 22222222 2567899999999998876
Q ss_pred hhh-hhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHH
Q 039062 638 AGL-DFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCF 716 (871)
Q Consensus 638 ~~~-~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l 716 (871)
.+. -...++..+...+.+.+++... ..+..++.++..+.+..+.....+.+..++.++=.++.. +...|+.++.+|
T Consensus 686 s~~~~~~q~i~~I~n~L~ds~qs~~~-~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~--n~~aR~~Af~lL 762 (1176)
T KOG1248|consen 686 SGEGLVEQRIDDIFNSLLDSFQSSSS-PAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEV--NVKARRNAFALL 762 (1176)
T ss_pred chhhHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccc--cHHHHhhHHHHH
Confidence 112 2234666777888877776644 688899999999999888555555566666655455444 667888999988
Q ss_pred HHHH--Hhh---ccC-hHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccch
Q 039062 717 GDIA--LAI---GEN-FEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYA 790 (871)
Q Consensus 717 ~~i~--~~~---~~~-~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~ 790 (871)
-.|+ ... |.+ -..-++.+++.+...+.+ |+ ..++...+-++.++++..... .=.+++
T Consensus 763 ~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~g-------d~------~~~~as~Ivai~~il~e~~~~----ld~~~l 825 (1176)
T KOG1248|consen 763 VFIGAIQSSLDDGNEPASAILNEFLSIISAGLVG-------DS------TRVVASDIVAITHILQEFKNI----LDDETL 825 (1176)
T ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHHhhhcc-------cH------HHHHHHHHHHHHHHHHHHhcc----ccHHHH
Confidence 8888 322 211 122456666666665543 21 223333255677777765432 112567
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhccc-ccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHH
Q 039062 791 PHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSN-AGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINKA 868 (871)
Q Consensus 791 ~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~-~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (871)
+.++..+...+.. .+++++++|++++..++..++.. ..|+++. +.+.+-.........+|..+-+-+.+|=+.
T Consensus 826 ~~li~~V~~~L~s--~sreI~kaAI~fikvlv~~~pe~~l~~~~~~---LL~sll~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 826 EKLISMVCLYLAS--NSREIAKAAIGFIKVLVYKFPEECLSPHLEE---LLPSLLALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHcCCHHHHhhhHHH---HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 7888888888875 58999999999999999999987 4577776 444444455455666666666555554433
No 44
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.43 E-value=2.1e-09 Score=118.09 Aligned_cols=540 Identities=15% Similarity=0.138 Sum_probs=342.7
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHH
Q 039062 95 TCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNK 174 (871)
Q Consensus 95 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 174 (871)
..++..+...+-..|.....-++.++...+....--+++|++.+.. .....+...+-.-++.+...... +.+...
T Consensus 85 a~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~----~~~~~~ 159 (759)
T KOG0211|consen 85 AVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGG----PEYAHM 159 (759)
T ss_pred HHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccc----hhHHHH
Confidence 3444555556666677777777888777655334578999999988 55556666666666666554311 334444
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhh
Q 039062 175 ILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKL 254 (871)
Q Consensus 175 i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~ 254 (871)
+.+.+..... +....+|..++..+...+.-.+. ...+..+...+..+..+.-...|..++..+.......++
T Consensus 160 ll~~le~l~~--~eet~vr~k~ve~l~~v~~~~~~----~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~-- 231 (759)
T KOG0211|consen 160 LLPPLELLAT--VEETGVREKAVESLLKVAVGLPK----EKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPD-- 231 (759)
T ss_pred hhHHHHhhhH--HHHHHHHHHHHHHHHHHHHhcCh----HHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCCh--
Confidence 4555555555 67888999999999987654332 222355566665555442233466666766665544332
Q ss_pred HHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccC
Q 039062 255 APYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEE 334 (871)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 334 (871)
.+.-.++.+.+.+..++..+.+|..+..-.+.++..... ......++|...+... |
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---------------------~~~~s~v~~~~~~L~~---D 287 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---------------------EIVKSEVLPTLIQLLR---D 287 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---------------------HHHHhhccHHHhhhhh---c
Confidence 111235666666777888888888777766666553210 1111223333333221 1
Q ss_pred CcccccccccHhHHHHHHHHHHHHHcCC--CcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHH
Q 039062 335 DQDQEEGAWNIAMAGGTCLGLVARTVGD--DIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALS 412 (871)
Q Consensus 335 d~~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~ 412 (871)
|. ..+|.+|...+..+...+.. .....+.+.+.+...+.+|++|+.....+..+....+++.. -....+
T Consensus 288 dq------dsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~---~~~~~~ 358 (759)
T KOG0211|consen 288 DQ------DSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSAT---RTQLVP 358 (759)
T ss_pred ch------hhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccC---cccchh
Confidence 21 37999999999999888753 45556677777778889999999988877777776553211 134566
Q ss_pred HHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccC
Q 039062 413 FMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDV 491 (871)
Q Consensus 413 ~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~ 491 (871)
.....+ +|+...+|.+...-...++.....+ .+.......++|.+.....| +..|+.+.+.....+.....
T Consensus 359 ~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~~~-----~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-- 430 (759)
T KOG0211|consen 359 PVSNLL-KDEEWEVRYAIAKKVQKLACYLNAS-----CYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-- 430 (759)
T ss_pred hHHHHh-cchhhhhhHHhhcchHHHhhhcCcc-----cccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--
Confidence 667788 9999999999888888887776421 23344555678888887777 67888777765544433221
Q ss_pred CCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHhhhccCCChhhH
Q 039062 492 GPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTD-ETAPMVLQLVPVIMMELHKTLEGQKLSSDER 570 (871)
Q Consensus 492 ~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ 570 (871)
.+.. +..+.+.....+++. .+.+|......+..+....+. ...-+.+..+|.+...-.+ .
T Consensus 431 --k~~t---i~~llp~~~~~l~de---~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d-----------~ 491 (759)
T KOG0211|consen 431 --KERT---ISELLPLLIGNLKDE---DPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAED-----------L 491 (759)
T ss_pred --cCcC---ccccChhhhhhcchh---hHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccc-----------h
Confidence 1221 222233333334443 457787777777555554442 3444556777776654322 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHH-HHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhH
Q 039062 571 EKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQ-IMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDF 649 (871)
Q Consensus 571 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i 649 (871)
..+++..+++.+-.++...+.. +..+ .-+.+..-+.+....+|++|...+..++..+|.. -+...+
T Consensus 492 --~wRvr~ail~~ip~la~q~~~~---------~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~--w~~~~~ 558 (759)
T KOG0211|consen 492 --LWRVRLAILEYIPQLALQLGVE---------FFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSE--WARLEE 558 (759)
T ss_pred --hHHHHHHHHHHHHHHHHhhhhH---------HhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcc--hhHHHh
Confidence 1245666677776666665532 2222 2233334455556679999999999999999843 245678
Q ss_pred HHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhcc
Q 039062 650 YKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGE 725 (871)
Q Consensus 650 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~ 725 (871)
+|.++....++ .+..|.+.+.++..++..++..+. ...+++.+.+...++ ..+||-+++..+..+...+..
T Consensus 559 i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~--~~~Llp~~~~l~~D~--vanVR~nvak~L~~i~~~L~~ 629 (759)
T KOG0211|consen 559 IPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEIT--CEDLLPVFLDLVKDP--VANVRINVAKHLPKILKLLDE 629 (759)
T ss_pred hHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHH--HHHHhHHHHHhccCC--chhhhhhHHHHHHHHHhhcch
Confidence 88877776544 578999999999999998885553 467888888877777 678999999999998887754
No 45
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.9e-07 Score=102.60 Aligned_cols=617 Identities=14% Similarity=0.102 Sum_probs=318.2
Q ss_pred hHHHHHHHHHHHHHHhhh-cCCCCchHHHHHHHHhhcCCChH--HHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhh
Q 039062 106 ADARSTSSQVIAKVAGIE-LPQKQWPELIVSLLSNVHQLPAH--VKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQG 182 (871)
Q Consensus 106 ~~vr~~~a~~l~~i~~~~-~~~~~~~~ll~~L~~~l~~~~~~--~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~ 182 (871)
+..|..+|.++++..... .. .....+++.++.+-+...++ .+.+.+..+..+.+..+.+.. -++....++.+-.+
T Consensus 189 ~~~r~~aalllsk~~sR~D~~-~~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~-l~~~~~~~r~L~~~ 266 (1133)
T KOG1943|consen 189 GILRRSAALLLSKLFSRTDVK-DLLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDL-LPYSDTGLRMLSVC 266 (1133)
T ss_pred chhHHHHHHHHHHHcccccHH-HHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhh-HHHhhhhhHhhccc
Confidence 477888888888887542 11 12334444444443333333 345677777777777633222 34444445444444
Q ss_pred hcCCCCCHHHHHHHHHHHHHhh--hcchhc--------------------c------------c----ChhhHHHHHHHH
Q 039062 183 MNASEMNNDVRLAATRALYNAL--SFAQAN--------------------F------------S----NDMERDYIMRVV 224 (871)
Q Consensus 183 l~~~~~~~~vr~~al~~l~~~~--~~~~~~--------------------~------------~----~~~~~~~i~~~l 224 (871)
-.+++...-+|+.-+|+++.+- ...+.. + . ..+..+.++..+
T Consensus 267 ~~~~d~~~llrKllvKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~L 346 (1133)
T KOG1943|consen 267 RESNDGQSLLRKLLVKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHL 346 (1133)
T ss_pred ccccccHhHHHHHHHHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHH
Confidence 3332333567777777777431 111100 0 0 011234567777
Q ss_pred HHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCC-hhHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 039062 225 CEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDE-EPVALQAIEFWSSICDEEIDILEEYGSDFT 303 (871)
Q Consensus 225 ~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~ 303 (871)
++.+.+.|..+|-.|++.++.+.++.|..+.. +++.-++..+.-.+ +..=..|+-++..++...
T Consensus 347 ls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad---~vi~svid~~~p~e~~~aWHgacLaLAELA~rG------------ 411 (1133)
T KOG1943|consen 347 LSALSDTDTVVRWSAAKGLGRVTSRLPPELAD---QVIGSVIDLFNPAEDDSAWHGACLALAELALRG------------ 411 (1133)
T ss_pred HHhccCCcchhhHHHHHHHHHHHccCcHHHHH---HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC------------
Confidence 77788888888888888888888877643332 33333333332212 222234444444443321
Q ss_pred CCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhh
Q 039062 304 GNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQ 383 (871)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 383 (871)
-.....++.++|.+.+.+.++ .++ | . .+..-.+
T Consensus 412 --------lLlps~l~dVvplI~kaL~Yd------------~~~-------------G-------------~-~s~G~~V 444 (1133)
T KOG1943|consen 412 --------LLLPSLLEDVVPLILKALHYD------------VRR-------------G-------------Q-HSVGQHV 444 (1133)
T ss_pred --------CcchHHHHHHHHHHHHHhhhh------------hhh-------------c-------------c-cccccch
Confidence 112223445566665555431 111 0 0 1112369
Q ss_pred HHHHHHHHHHhhcCCChhhhhHHHHHHHHHH-HHHccCCCcHHHHHHHHHHHHHHhhhhccCCCC---------------
Q 039062 384 REAATYAFGSILEGPSPDKLLHIVNVALSFM-LSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIG--------------- 447 (871)
Q Consensus 384 r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l-~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~--------------- 447 (871)
|.+|+++.-+++....+..+++++..+.+.+ ...+ -|+.-.+|.+|.-++-......++-..+
T Consensus 445 RDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~Al-FDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~r 523 (1133)
T KOG1943|consen 445 RDAACYVCWAFARAYSPSDLKPVLQSLASALLIVAL-FDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNR 523 (1133)
T ss_pred HHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHh-cCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhh
Confidence 9999999999999877788899888787655 4566 8999999988888765555443211000
Q ss_pred ---------CCccchhhHHHHHHHHHHh-ccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCC
Q 039062 448 ---------TPIITQANCQQIITVLLQS-MKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRED 516 (871)
Q Consensus 448 ---------~~~~~~~~~~~il~~l~~~-l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~ 516 (871)
.....+.|...++..++.. +.- ++.+|+.++++|..+.....+.... -+++++++ .....
T Consensus 524 sNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~----~~L~~lld----~~ls~- 594 (1133)
T KOG1943|consen 524 SNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLAD----YVLPPLLD----STLSK- 594 (1133)
T ss_pred hhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcc----cchhhhhh----hhcCC-
Confidence 0011233455555555543 222 3577999999999986543222112 33444443 22233
Q ss_pred hhhhhHHHHHHHHHHHHHHhcCCCc--HH-HHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCC
Q 039062 517 AGESRLRTAAYETLNEVVRSSTDET--AP-MVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGS 593 (871)
Q Consensus 517 ~~~~~vr~~a~~~l~~l~~~~~~~~--~~-~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 593 (871)
+...|..++.+.+.++.....-- .. ...+-+.-+.+.+.. ..+....+........+....++.+..
T Consensus 595 --~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~--------~~~~~~~rg~~~lmr~~~~~~Ie~~s~ 664 (1133)
T KOG1943|consen 595 --DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPP--------ICDRYFYRGQGTLMRQATLKFIEQLSL 664 (1133)
T ss_pred --ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccH--------HHHHHhccchHHHHHHHHHHHHHHhhh
Confidence 44678888888888887654211 11 111111111111100 011111111111222344444444443
Q ss_pred CCCchhhhhh-hHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhH-hHHHHHHhhhcCCcchhHHHHHHH
Q 039062 594 SEPTKYVFMQ-YADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMP-DFYKYLEMGLQNFEEYQVCAVTVG 671 (871)
Q Consensus 594 ~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~~v~~~a~~ 671 (871)
.. ...+.. ..+.....+...+..++ .+|+.+..+++.++...-.. -++.. .++...+..+.+..+..+|.-...
T Consensus 665 s~--~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~-d~~~~~~li~~~ls~~~~~~~~~~r~g~~l 740 (1133)
T KOG1943|consen 665 SK--DRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKA-DEGEEAPLITRYLSRLTKCSEERIRRGLIL 740 (1133)
T ss_pred cc--chhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhc-CchhhhHHHHHHHHHhcCchHHHHHHHHHH
Confidence 31 000111 12233333444443334 68899999999998655311 11111 355555555555434345443333
Q ss_pred HHHHHHHHhhhcccc-cHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhcc-ChHHhHHHHHHHHHHHHhhcccCC
Q 039062 672 VVGDICRALEEKILP-YCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGE-NFEKYLMYAMPMLQSAADLSAHTA 749 (871)
Q Consensus 672 ~l~~l~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~ 749 (871)
.++.+.. +.+.- +-..+-..++......- ..+-|...+.++..++...++ .+..-.++++..+.+++.+.....
T Consensus 741 al~~lp~---~~i~~~~q~~lc~~~l~~~p~d~-~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~ 816 (1133)
T KOG1943|consen 741 ALGVLPS---ELIHRHLQEKLCKLVLELLPSDA-WAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDS 816 (1133)
T ss_pred HHccCcH---HhhchHHHHHHHHHHhccCcccc-cHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhccccc
Confidence 3333221 11111 12223333333322221 456788889999999988873 344556677777777776543222
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccc-hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhH
Q 039062 750 NVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPY-APHILQFLDSMYMEKDMDELVMKTAIGLLGDLADT 824 (871)
Q Consensus 750 ~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~ 824 (871)
++|- -.-+|+.++.++..+...++. ++.+.+. +..++..+.+-.-+ .-+.+|..|..|+..+..+
T Consensus 817 rGDV-----GswVReaAm~al~~~~~~l~~---p~~ld~~~i~~~~~~~vqQ~ve--KIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 817 RGDV-----GSWVREAAMKALSSLLDTLSS---PKLLDEDSINRIIRYFVQQAVE--KIDRLRELAASALNQIVVH 882 (1133)
T ss_pred CccH-----HHHHHHHHHHHHHhhhhhhcC---cccccHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHhceeec
Confidence 2231 245899999999988877654 2333322 22333323222222 3445699999999999887
No 46
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.38 E-value=9.6e-12 Score=117.32 Aligned_cols=319 Identities=15% Similarity=0.166 Sum_probs=209.7
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCC
Q 039062 370 PFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGT 448 (871)
Q Consensus 370 ~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 448 (871)
|.+.+.+.+.+-+....|.+-|..+.+.-....+.+.+ ..++|.++..+....+...+..|.|+|.++++....
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~----- 148 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQ----- 148 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCccc-----
Confidence 55666666777777777777777766532212233333 356788888872234445688999999999886532
Q ss_pred CccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHH--HHHHHHHHhhccCChhhhhHHHH
Q 039062 449 PIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQ--EIVQSLLTVTHREDAGESRLRTA 525 (871)
Q Consensus 449 ~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~--~il~~l~~~l~~~~~~~~~vr~~ 525 (871)
...-..-...+|.+++.|.+ +..|++.+.|+|++++.. .+....|+- ..++.++..+.+... +-++-..
T Consensus 149 -QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGD------S~~~RD~vL~~galeplL~ll~ss~~-~ismlRn 220 (526)
T COG5064 149 -QTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGD------SEGCRDYVLQCGALEPLLGLLLSSAI-HISMLRN 220 (526)
T ss_pred -ceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCC------chhHHHHHHhcCchHHHHHHHHhccc-hHHHHHH
Confidence 11111223578899999987 679999999999998632 233333331 234444444443322 3355557
Q ss_pred HHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhh
Q 039062 526 AYETLNEVVRSSTD-ETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQY 604 (871)
Q Consensus 526 a~~~l~~l~~~~~~-~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 604 (871)
+-..++.+.+.... .--..+.+.+|.+.+.+... |+ ++...+|++++.+...-... +...
T Consensus 221 ~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~---------D~----evlvDA~WAiSYlsDg~~E~------i~av 281 (526)
T COG5064 221 ATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSR---------DP----EVLVDACWAISYLSDGPNEK------IQAV 281 (526)
T ss_pred hHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhc---------CH----HHHHHHHHHHHHhccCcHHH------HHHH
Confidence 88899999876542 34456778888888887642 22 35566999999987542221 3233
Q ss_pred HH-HHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhH-hHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhh
Q 039062 605 AD-QIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMP-DFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEE 682 (871)
Q Consensus 605 ~~-~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 682 (871)
++ .+.+.++++|.+++..++..++..+|.++......-...+. ..++.+...++++.+ .+|..|||+++++...-.+
T Consensus 282 ld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke-~irKEaCWTiSNITAGnte 360 (526)
T COG5064 282 LDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKE-NIRKEACWTISNITAGNTE 360 (526)
T ss_pred HhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhh-hhhhhhheeecccccCCHH
Confidence 32 56778999999999999999999999998665433222221 244555555666655 8999999999998665444
Q ss_pred cccccH-HHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhh
Q 039062 683 KILPYC-DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAI 723 (871)
Q Consensus 683 ~~~~~~-~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~ 723 (871)
+++..+ .+++|.|+..++.. +-.+|..|++++++.....
T Consensus 361 qiqavid~nliPpLi~lls~a--e~k~kKEACWAisNatsgg 400 (526)
T COG5064 361 QIQAVIDANLIPPLIHLLSSA--EYKIKKEACWAISNATSGG 400 (526)
T ss_pred HHHHHHhcccchHHHHHHHHH--HHHHHHHHHHHHHhhhccc
Confidence 444333 47788888888876 5678899999999876654
No 47
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.6e-06 Score=92.55 Aligned_cols=648 Identities=13% Similarity=0.136 Sum_probs=329.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCC----C--CChhHHHHHHHHHHcccccchhhhHHHHhhh
Q 039062 8 VLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELAND----D--KPVDSRKLAGLILKNALDAKEQHRKFELVQR 81 (871)
Q Consensus 8 ~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~----~--~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~ 81 (871)
++.-+.+....++++=-+.|.-.-+.+.|.-|..|+.-+.+. + ....++..|-.++|+.=-...+ ...
T Consensus 93 Iv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrS------daL 166 (960)
T KOG1992|consen 93 IVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRS------DAL 166 (960)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCccccc------HHH
Confidence 445566667788888777787666666666666666544432 1 1346777777777763210000 023
Q ss_pred ccCC----C--HHHHHHHHHHHHHhhc--CCchHHHHHHHHHHHHHHhh-------hcCC---CCchHHHHHHHHhhcCC
Q 039062 82 WLSL----D--ANVKTQIKTCLLNTLT--STVADARSTSSQVIAKVAGI-------ELPQ---KQWPELIVSLLSNVHQL 143 (871)
Q Consensus 82 ~~~~----~--~~~~~~i~~~ll~~l~--~~~~~vr~~~a~~l~~i~~~-------~~~~---~~~~~ll~~L~~~l~~~ 143 (871)
|..+ + .+-...+......... +.+....+.+-..+--+++. ++|+ ++-.+.++...+.++..
T Consensus 167 ~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~ 246 (960)
T KOG1992|consen 167 WLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYD 246 (960)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhcc
Confidence 3210 0 0001112222222221 12222222222222223332 2231 12223333444444322
Q ss_pred C-------------hHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCH---HHHHHHHHHHHHhhhcc
Q 039062 144 P-------------AHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNN---DVRLAATRALYNALSFA 207 (871)
Q Consensus 144 ~-------------~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~---~vr~~al~~l~~~~~~~ 207 (871)
+ ...|....+.+.--...+ ++.+ +..+++++......+.+-.+++ .+.-.|++.|.+.....
T Consensus 247 ~p~le~~~ee~~~l~~lka~ICEi~~LY~~kY-eEef-~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~ 324 (960)
T KOG1992|consen 247 NPLLESDEEEATVLDKLKAQICEIFNLYATKY-EEEF-QPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRP 324 (960)
T ss_pred CcccccCcccccHHHHHHHHHHHHHHHHHHhh-HHHH-HhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhh
Confidence 1 123444455555444555 6677 6788888888777776322222 23344566666654321
Q ss_pred h--hcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChh-HHHHHHHHH
Q 039062 208 Q--ANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEP-VALQAIEFW 284 (871)
Q Consensus 208 ~--~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~a~~~~ 284 (871)
. ..|.. +.++..+++...-++-..|..--+.+- +.-++++-+.+...|.+ -|..|++++
T Consensus 325 ~y~~~F~~----~~vl~~i~e~VvlpN~~lR~eDeElFE--------------D~pleYiRRDlEGsDvdTRRR~a~dlv 386 (960)
T KOG1992|consen 325 HYAELFEG----ENVLAQICEKVVLPNLILREEDEELFE--------------DNPLEYIRRDLEGSDVDTRRRAAIDLV 386 (960)
T ss_pred hhHhhhcc----hHHHHHHHHhhcccccccchhhHHHhc--------------cCHHHHHHHhcccCCcchhHHHHHHHH
Confidence 1 11211 445555555544444444433322221 12344444555544444 456788888
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHc----
Q 039062 285 SSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTV---- 360 (871)
Q Consensus 285 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~---- 360 (871)
..+|+... ....+.+...+..++.... .++ -..|.-...|......++...
T Consensus 387 rgL~~~fe-------------------~~vt~v~~~~v~~~l~~y~---~nP---S~nWk~kd~aiyL~talaik~~t~~ 441 (960)
T KOG1992|consen 387 RGLCKNFE-------------------GQVTGVFSSEVQRLLDQYS---KNP---SGNWKKKDRAIYLVTALAIKGQTAK 441 (960)
T ss_pred HHHHHHhc-------------------chhHHHHHHHHHHHHHHhc---cCC---CccccccchhhhhhHHHHhhcchhh
Confidence 88877520 1222233333333333222 222 233877666666665555432
Q ss_pred -CC----Ccc-------cchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHH
Q 039062 361 -GD----DIV-------PLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKD 428 (871)
Q Consensus 361 -~~----~~~-------~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~ 428 (871)
|- ..+ ..+.|.+...-.++.+-.|.+++.-+..+-... -.+++-.++|.++..+ ..+.+.|..
T Consensus 442 ~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql----~~~~lm~~~p~li~~L-~a~s~vvhs 516 (960)
T KOG1992|consen 442 HGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQL----GKEHLMALLPRLIRFL-EAESRVVHS 516 (960)
T ss_pred cceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccC----ChHHHHHHHHHHHHhc-cCcchHHHH
Confidence 11 111 122222222111234555566544333322222 2356778899999999 999999998
Q ss_pred HHHHHHHHHhhhhccC--CCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHH
Q 039062 429 TTAWTLGRIFEFLHGS--TIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIV 505 (871)
Q Consensus 429 ~a~~~l~~~~~~~~~~--~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il 505 (871)
.|+.++.++.....+. ..-++.....+...++..+++.+.- ...--+....++.++.... .+...|+.+.++
T Consensus 517 YAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~-----~~~i~p~~~~~l 591 (960)
T KOG1992|consen 517 YAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISIL-----QSAIIPHAPELL 591 (960)
T ss_pred HHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhC-----HHhhhhhhhHHH
Confidence 8888888877654320 0001122234455566666665552 1111223334444444322 455667777766
Q ss_pred HHHHHhh----ccCChhhhhHHHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHH
Q 039062 506 QSLLTVT----HREDAGESRLRTAAYETLNEVVRSSTDET----APMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQ 577 (871)
Q Consensus 506 ~~l~~~l----~~~~~~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 577 (871)
..+.+.+ +++. ++..-...++.+|.++....+.- ..+...++|.+...+.+.+ .+..
T Consensus 592 ~~Lteiv~~v~KNPs--~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI-------------~Efi 656 (960)
T KOG1992|consen 592 RQLTEIVEEVSKNPS--NPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDI-------------QEFI 656 (960)
T ss_pred HHHHHHHHHHhcCCC--CchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH-------------HHHH
Confidence 6665543 4444 56666789999999999877543 5566677777777764421 2355
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHH-HHcccCcchhhhHHHHHHHHHHHhhhhhh--hhhHhHHHHHH
Q 039062 578 GLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLR-VFACRSATVHEEAMLAIGALAYAAGLDFA--KYMPDFYKYLE 654 (871)
Q Consensus 578 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~-~l~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~l~~i~~~l~ 654 (871)
..++..++.++...+.. +.+.+.++++.+++ .+-+.. .-..+....+.++.+.....+. ..++.++..+-
T Consensus 657 PYvfQlla~lve~~~~~------ip~~~~~l~~~lLsp~lW~r~-gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifq 729 (960)
T KOG1992|consen 657 PYVFQLLAVLVEHSSGT------IPDSYSPLFPPLLSPNLWKRS-GNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQ 729 (960)
T ss_pred HHHHHHHHHHHHhcCCC------CchhHHHHHHHhcCHHHHhhc-CCcHHHHHHHHHHHhcCchhhcccccchhHHHHHH
Confidence 56777888888776653 33344444444432 111111 1123444555555554444444 44566666655
Q ss_pred hhhcCCcchhHHHHHHHHHHHHHHHhh-hcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhcc-ChHHhHH
Q 039062 655 MGLQNFEEYQVCAVTVGVVGDICRALE-EKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGE-NFEKYLM 732 (871)
Q Consensus 655 ~~l~~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~-~~~~~~~ 732 (871)
+.+.++.. + ..++.++..+...++ ..+.||+.++...+++.++++.+..-+|. ...+++.++...|. .+...++
T Consensus 730 kLiaSka~-D--h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~-~~vF~~~~~ik~~~~~l~e~~d 805 (960)
T KOG1992|consen 730 KLIASKAN-D--HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKS-FIVFFSLFTIKKGGLMLAEVID 805 (960)
T ss_pred HHhcCccc-c--hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHHHHHhhhHHHHHHHh
Confidence 55543311 1 147888898888887 56889999999999999998854333333 33444444444443 3445555
Q ss_pred HHHHHHHHHH
Q 039062 733 YAMPMLQSAA 742 (871)
Q Consensus 733 ~i~~~l~~~l 742 (871)
.+=|-+...+
T Consensus 806 ~IQ~~~fg~l 815 (960)
T KOG1992|consen 806 GIQPGMFGML 815 (960)
T ss_pred hcchhHHHHH
Confidence 4444444333
No 48
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=99.32 E-value=2.2e-08 Score=99.51 Aligned_cols=590 Identities=15% Similarity=0.108 Sum_probs=309.3
Q ss_pred ChHHHHHHHHHHHHHhhccCCCccchhhHHHHHH---------HHHhhhcCCCCCHHHHHHHHHHHHHhhhcch------
Q 039062 144 PAHVKQATLETLGYLCEEVSPDVVEQDHVNKILT---------AVVQGMNASEMNNDVRLAATRALYNALSFAQ------ 208 (871)
Q Consensus 144 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~---------~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~------ 208 (871)
...+|.+|+.++..+...++...+ -.++..++| .+.-.++ |+++..|..|++.+..+++-..
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~-ygyw~~~~pd~~~~g~p~l~~l~lk--d~~~~~ra~alqv~~~~l~gsk~fls~a 85 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVL-YGYWSAFIPDTPELGSPSLMTLTLK--DPSPKTRACALQVLSAILEGSKQFLSVA 85 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhh-hceeeeecCCCCCCCCceeeEEecC--CCChhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 457899999999887776621111 112222221 2344666 8999999999999998875322
Q ss_pred -----hcccChh--h---HHHHHHHHHHhh-ccCcHHHHHHHHHHHHHHHHHhHH-hh-HHhHHHHHHHHHHHhhCCChh
Q 039062 209 -----ANFSNDM--E---RDYIMRVVCEAT-QSAELKIRQAAFECLVSISSTYYE-KL-APYMQDIYSITAKAVREDEEP 275 (871)
Q Consensus 209 -----~~~~~~~--~---~~~i~~~l~~~l-~~~~~~~~~~a~~~l~~l~~~~~~-~~-~~~~~~l~~~~~~~~~~~~~~ 275 (871)
+.|..-. . .-.....++..+ ....+.+..++++|+..+++..|- .+ ..++.++.+.+-..+++.|+.
T Consensus 86 ~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~ 165 (728)
T KOG4535|consen 86 EDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVN 165 (728)
T ss_pred hccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 1222100 0 011222333333 234677889999999999987432 22 233445555555567889999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhc--CCCCCCCCCchhhhHHhhhhhhHHHHHHHHhccc-------CCcc-cccccccH
Q 039062 276 VALQAIEFWSSICDEEIDILEEYG--SDFTGNSDIPCFYFIKQALPALVPLLLEILLKQE-------EDQD-QEEGAWNI 345 (871)
Q Consensus 276 ~~~~a~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-------~d~~-~~~~~~~~ 345 (871)
++..++..+..++.... +.++.. -..-..+ .+..-++.+ -|--.+.+...+ .++. ..+..|-+
T Consensus 166 v~vs~l~~~~~~v~t~~-~~pei~~~~~~~~s~----~n~~~~h~s--~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i 238 (728)
T KOG4535|consen 166 VRVSSLTLLGAIVSTHA-PLPEVQLLLQQPCSS----SNSATPHLS--PPDWWKKLPAGPSLEETSVSSPKGSSEPCWLI 238 (728)
T ss_pred hhhHHHHHHHHHHhcCC-CCHHHHHHhcCCCcc----ccccCCCCC--ChHHHHhcCCCchhhhhccCCccCCCCCccee
Confidence 99999988887766421 111100 0000000 000000000 000011111000 0000 00112322
Q ss_pred hHHHHHHHHHHHHHcCCCcccchHHHHHhhhc---CCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCC
Q 039062 346 AMAGGTCLGLVARTVGDDIVPLVIPFIEENIA---KPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDP 422 (871)
Q Consensus 346 r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~---~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~ 422 (871)
+..- .++...+..-+ .......... -++ .+|..++.++..++..+ ....-++-++...+...+ .++
T Consensus 239 ~~~~-----~i~~~~~~~s~--~~~~~~~~~~~~~~ps-~~rle~~qvl~~~a~~~--~~~~~~~~~l~RvI~~~~-~~~ 307 (728)
T KOG4535|consen 239 RLCI-----SIVVLPKEDSC--SGSDAGSAAGSTYEPS-PMRLEALQVLTLLARYF--SMTQAYLMELGRVICKCM-GEA 307 (728)
T ss_pred eeee-----eeeecCCcccc--chhhHHhhhcCccCCc-hhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHccC-CCC
Confidence 2100 00000000000 0000001111 122 46788888898888864 455566778888888899 999
Q ss_pred cHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHH-----HhccC--ChHHHHHHHHHHHHHHhhcccCCCCC
Q 039062 423 NNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLL-----QSMKD--TPNVAEKACGALYFLAQGYEDVGPSS 495 (871)
Q Consensus 423 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~-----~~l~d--~~~v~~~a~~~l~~l~~~~~~~~~~~ 495 (871)
.|.++..+..++..++........+.+...+..-..+.-.++ ...-| .+..+...|.++.++... +.+
T Consensus 308 ~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~-----~f~ 382 (728)
T KOG4535|consen 308 DPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPE-----AFS 382 (728)
T ss_pred ChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCch-----hhc
Confidence 999998888888877765531110001111111111111111 01112 345677888888877431 123
Q ss_pred CCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHH
Q 039062 496 PLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDE-TAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQG 574 (871)
Q Consensus 496 ~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~ 574 (871)
.+.+--.......+.... |..+.-++.+|+.+++.++-+.+-. ..-+...-...+...+.+ .. -
T Consensus 383 ~lpn~~~T~~~~Fl~GC~--d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d-----------~~--l 447 (728)
T KOG4535|consen 383 NLPNDRQTLCITFLLGCN--DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLED-----------KS--L 447 (728)
T ss_pred CCCCcchhhhHHHHhccc--chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhh-----------Hh--H
Confidence 333322233333333333 2225567888888888887776632 122223333333333322 11 1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchhhh-hhhHHHHHHHHHHHHccc---CcchhhhHHHHHHHHHHHhhhhhhhhh----
Q 039062 575 ELQGLLCGCLQVIIQKLGSSEPTKYVF-MQYADQIMGLFLRVFACR---SATVHEEAMLAIGALAYAAGLDFAKYM---- 646 (871)
Q Consensus 575 ~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~i~~~l~~~l~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~l---- 646 (871)
..+.++.+++++|...+-...++...+ ..+...++..+...-... .+.|+..++.+++.+......-..+-+
T Consensus 448 n~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~ 527 (728)
T KOG4535|consen 448 NVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEII 527 (728)
T ss_pred hHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHH
Confidence 356678888888888776542111111 122333444444433322 556999999999999887754333323
Q ss_pred HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh--hcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhc
Q 039062 647 PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE--EKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG 724 (871)
Q Consensus 647 ~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~ 724 (871)
+.-+..+..+..-+...+|+.+++.++|++.++-. -.-.+|.+.+++.|..++.+-. +..+|.+|+.++..-...
T Consensus 528 ~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~-NFKVRi~AA~aL~vp~~r-- 604 (728)
T KOG4535|consen 528 EESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK-NFKVRIRAAAALSVPGKR-- 604 (728)
T ss_pred HHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc-cceEeehhhhhhcCCCCc--
Confidence 33333333333334556899999999999988644 2335788999999988886553 567899999888765443
Q ss_pred cChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccC
Q 039062 725 ENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKN 779 (871)
Q Consensus 725 ~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~ 779 (871)
+++...++-.+..+..++....+. .+.+++.|-+.++.+.+.++.++......
T Consensus 605 e~~~d~~~Lsw~~lv~aLi~s~~~--v~f~eY~~~Dsl~~q~c~av~hll~la~S 657 (728)
T KOG4535|consen 605 EQYGDQYALSWNALVTALQKSEDT--IDFLEYKYCDSLRTQICQALIHLLSLASS 657 (728)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444455555555443100 13334556678899999988888776543
No 49
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2.9e-08 Score=104.74 Aligned_cols=496 Identities=16% Similarity=0.189 Sum_probs=308.2
Q ss_pred HHHhhcCCc-hHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHH
Q 039062 97 LLNTLTSTV-ADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKI 175 (871)
Q Consensus 97 ll~~l~~~~-~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i 175 (871)
|.+.|.+.. ...+.+.-.+|+.||+.. .-.+++|.....+.+.+.++|+-.-.-|-+.++.- |+.- -+
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~----dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeq-pdLA------LL 108 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGK----DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQ-PDLA------LL 108 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCC----cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcC-CCce------ee
Confidence 344566554 566667777888888764 67899999999999999988877666665655554 3321 01
Q ss_pred -HHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhh
Q 039062 176 -LTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKL 254 (871)
Q Consensus 176 -~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~ 254 (871)
+..+-..|. |+++-+|..|+++++.+=- ....+.++-.+.++..++.+-+|+.|..++..+.+..++.-
T Consensus 109 SIntfQk~L~--DpN~LiRasALRvlSsIRv--------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 109 SINTFQKALK--DPNQLIRASALRVLSSIRV--------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred eHHHHHhhhc--CCcHHHHHHHHHHHHhcch--------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 234556777 9999999999999988421 12336677788889999999999999999998876544422
Q ss_pred HHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccC
Q 039062 255 APYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEE 334 (871)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 334 (871)
.++.+.+-..+.|.++-+.-.|.-.+..+|-+..+ .+.+++..+...+.+
T Consensus 179 ----~qL~e~I~~LLaD~splVvgsAv~AF~evCPerld-------------------LIHknyrklC~ll~d------- 228 (968)
T KOG1060|consen 179 ----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLD-------------------LIHKNYRKLCRLLPD------- 228 (968)
T ss_pred ----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHH-------------------HhhHHHHHHHhhccc-------
Confidence 25666666677788887777777777777776433 344444444443321
Q ss_pred CcccccccccHhHHHHHHHHHHHHH-cCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHH
Q 039062 335 DQDQEEGAWNIAMAGGTCLGLVART-VGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSF 413 (871)
Q Consensus 335 d~~~~~~~~~~r~~a~~~l~~l~~~-~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~ 413 (871)
-++|.--. ....|-+-+.. +++... .-..+..+-.+.+-....+ +..+|-...+.+.-++..
T Consensus 229 -----vdeWgQvv-lI~mL~RYAR~~l~~P~~--~~~~~e~n~~~~~~~~~~~---------~~~~P~~~d~D~~lLL~s 291 (968)
T KOG1060|consen 229 -----VDEWGQVV-LINMLTRYARHQLPDPTV--VDSSLEDNGRSCNLKDKYN---------EIRTPYVNDPDLKLLLQS 291 (968)
T ss_pred -----hhhhhHHH-HHHHHHHHHHhcCCCccc--cccccccCccccccccccc---------ccCCCcccCccHHHHHHh
Confidence 11275432 22233333332 122100 0000001101100000000 111121223445667777
Q ss_pred HHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhcccCCC
Q 039062 414 MLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGALYFLAQGYEDVGP 493 (871)
Q Consensus 414 l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~~l~~l~~~~~~~~~ 493 (871)
.-.++ ...++.|..+++.+.-.++.. .....+...|++.|..++.++.-....+..++.. .
T Consensus 292 tkpLl-~S~n~sVVmA~aql~y~lAP~-------------~~~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~-----~ 352 (968)
T KOG1060|consen 292 TKPLL-QSRNPSVVMAVAQLFYHLAPK-------------NQVTKIAKALVRLLRSNREVQYVVLQNIATISIK-----R 352 (968)
T ss_pred ccHHH-hcCCcHHHHHHHhHHHhhCCH-------------HHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHhc-----c
Confidence 77788 889999988888775554432 2346788999998888877777776666666542 2
Q ss_pred CCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHH
Q 039062 494 SSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQ 573 (871)
Q Consensus 494 ~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~ 573 (871)
+..+.||++.+. ....| ...++..=++.|..++....- ..+++.+...++.. |.
T Consensus 353 ~~lF~P~lKsFf------v~ssD--p~~vk~lKleiLs~La~esni------~~ILrE~q~YI~s~---------d~--- 406 (968)
T KOG1060|consen 353 PTLFEPHLKSFF------VRSSD--PTQVKILKLEILSNLANESNI------SEILRELQTYIKSS---------DR--- 406 (968)
T ss_pred hhhhhhhhhceE------eecCC--HHHHHHHHHHHHHHHhhhccH------HHHHHHHHHHHhcC---------ch---
Confidence 677888887654 12333 234566667777777776442 44444444333221 11
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHH
Q 039062 574 GELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYL 653 (871)
Q Consensus 574 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l 653 (871)
++...+..+++..+...+ ...+.+++.++.++.+.+..|..++...|..++..-+..-.. ++..+
T Consensus 407 -~faa~aV~AiGrCA~~~~----------sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~----ii~~L 471 (968)
T KOG1060|consen 407 -SFAAAAVKAIGRCASRIG----------SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE----ILFQL 471 (968)
T ss_pred -hHHHHHHHHHHHHHHhhC----------chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH----HHHHH
Confidence 233445555555555433 356789999999999998889999999999998766543333 33334
Q ss_pred HhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccC
Q 039062 654 EMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN 726 (871)
Q Consensus 654 ~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~ 726 (871)
.+.+.+-..+.-|...+|++|..+...+ ...++++..+.+.+.++ ..++|-.++.....+...-..+
T Consensus 472 a~lldti~vp~ARA~IiWLige~~e~vp----ri~PDVLR~laksFs~E--~~evKlQILnL~aKLyl~~~~~ 538 (968)
T KOG1060|consen 472 ARLLDTILVPAARAGIIWLIGEYCEIVP----RIAPDVLRKLAKSFSDE--GDEVKLQILNLSAKLYLTNIDQ 538 (968)
T ss_pred HHHhhhhhhhhhhceeeeeehhhhhhcc----hhchHHHHHHHHhhccc--cchhhHHHHHhhhhheEechhh
Confidence 4444333344667778899998877633 33578888888888887 6788888888776665544444
No 50
>PRK09687 putative lyase; Provisional
Probab=99.30 E-value=5.2e-10 Score=110.93 Aligned_cols=251 Identities=17% Similarity=0.216 Sum_probs=172.6
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhH
Q 039062 179 VVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYM 258 (871)
Q Consensus 179 l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 258 (871)
+...+. |.+..+|..|+..|..+-. +.++..+..+++++++.+|..++..|+.+-..... .
T Consensus 28 L~~~L~--d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 28 LFRLLD--DHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred HHHHHh--CCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 445555 8999999999999987321 45666677778889999999999999987532100 1
Q ss_pred HHHHHHHHHH-hhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcc
Q 039062 259 QDIYSITAKA-VREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQD 337 (871)
Q Consensus 259 ~~l~~~~~~~-~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~ 337 (871)
...++.+... .+++++.+|..|+..++.++.... ... +..++.+...+. ++
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~-------------------~~~----~~a~~~l~~~~~--D~--- 140 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNP-------------------LYS----PKIVEQSQITAF--DK--- 140 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc-------------------ccc----hHHHHHHHHHhh--CC---
Confidence 2334444434 578889999999999888754210 011 112222222221 11
Q ss_pred cccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHH
Q 039062 338 QEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSA 417 (871)
Q Consensus 338 ~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~ 417 (871)
+|.+|..+..+|+.+.. +..++.+...+.+++|.+|..|+.+||.+.... +...+.++..
T Consensus 141 ----~~~VR~~a~~aLg~~~~-------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---------~~~~~~L~~~ 200 (280)
T PRK09687 141 ----STNVRFAVAFALSVIND-------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---------PDIREAFVAM 200 (280)
T ss_pred ----CHHHHHHHHHHHhccCC-------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---------HHHHHHHHHH
Confidence 27899988888854421 456777888888999999999999999983221 2467778899
Q ss_pred ccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhcccCCCCCCC
Q 039062 418 LTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGALYFLAQGYEDVGPSSPL 497 (871)
Q Consensus 418 l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~~l~~l~~~~~~~~~~~~l 497 (871)
+ .|+++.||..|.++||++.. +..+|.|++.+.+.. ++..++.+|+.+- +
T Consensus 201 L-~D~~~~VR~~A~~aLg~~~~-----------------~~av~~Li~~L~~~~-~~~~a~~ALg~ig---------~-- 250 (280)
T PRK09687 201 L-QDKNEEIRIEAIIGLALRKD-----------------KRVLSVLIKELKKGT-VGDLIIEAAGELG---------D-- 250 (280)
T ss_pred h-cCCChHHHHHHHHHHHccCC-----------------hhHHHHHHHHHcCCc-hHHHHHHHHHhcC---------C--
Confidence 9 99999999999999988532 368888999887743 7778888888772 1
Q ss_pred cchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHH
Q 039062 498 TPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNE 532 (871)
Q Consensus 498 ~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~ 532 (871)
+..++.|...+.... +..++..+.+++..
T Consensus 251 ----~~a~p~L~~l~~~~~--d~~v~~~a~~a~~~ 279 (280)
T PRK09687 251 ----KTLLPVLDTLLYKFD--DNEIITKAIDKLKR 279 (280)
T ss_pred ----HhHHHHHHHHHhhCC--ChhHHHHHHHHHhc
Confidence 234555555555333 56788888877753
No 51
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.30 E-value=6.4e-09 Score=113.22 Aligned_cols=398 Identities=18% Similarity=0.210 Sum_probs=258.0
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHH
Q 039062 97 LLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKIL 176 (871)
Q Consensus 97 ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~ 176 (871)
++.+|.+.+.+.-..++.+|..+.....|....+.+.+.|...+.++++.+|..++..++++.... ......-.-..++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHH
Confidence 778888777666678888999998876554446888999999999999999999999999887654 2211111235678
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHH
Q 039062 177 TAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAP 256 (871)
Q Consensus 177 ~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 256 (871)
+.+..++. +++..|...|++++..+....... . .-+...+...+...+..++..+|..+++++..+++..++.+..
T Consensus 122 ~~i~~~L~--~~d~~Va~~A~~~L~~l~~~~~~~-~-~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 122 PLIIQCLR--DPDLSVAKAAIKALKKLASHPEGL-E-QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred HHHHHHHc--CCcHHHHHHHHHHHHHHhCCchhH-H-HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88889998 899999999999999987643211 0 0001223666667776667889999999999999887776655
Q ss_pred hHH-HHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCC
Q 039062 257 YMQ-DIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEED 335 (871)
Q Consensus 257 ~~~-~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d 335 (871)
... ++++.++..+.++|.=++..|++.+..+++.... .+|+.. ..+++.+.+.+...++|
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g-----------------~~yL~~--~gi~~~L~~~l~~~~~d 258 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG-----------------LQYLEQ--QGIFDKLSNLLQDSEED 258 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH-----------------HHHHHh--CCHHHHHHHHHhccccC
Confidence 543 5888888899998888999999999999884321 122222 24667777766655444
Q ss_pred cccccccccHhH-HHHHHHHHHHHHcCCCc---ccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCC-hhhh----hHH
Q 039062 336 QDQEEGAWNIAM-AGGTCLGLVARTVGDDI---VPLVIPFIEENIAKPDWRQREAATYAFGSILEGPS-PDKL----LHI 406 (871)
Q Consensus 336 ~~~~~~~~~~r~-~a~~~l~~l~~~~~~~~---~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~-~~~~----~~~ 406 (871)
+. - ..+.. ......+.++...+..+ +|.+...+...+.+.+...+.+|+-.+|.++.... ...+ .+.
T Consensus 259 p~--~--~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~ 334 (503)
T PF10508_consen 259 PR--L--SSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPA 334 (503)
T ss_pred Cc--c--cchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchH
Confidence 31 0 11111 12245555555433333 46677777777888999999999999999987531 1222 234
Q ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHH-------------HHHHhccCC-hH
Q 039062 407 VNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIIT-------------VLLQSMKDT-PN 472 (871)
Q Consensus 407 l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~-------------~l~~~l~d~-~~ 472 (871)
+..++..+.... ......+|..++.+++.+...... .....+..+.. .+...++.. |.
T Consensus 335 ~~~~l~~~~~~~-~~~~~~lk~r~l~al~~il~~~~~-------~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~e 406 (503)
T PF10508_consen 335 MKHVLKAIGDAI-KSGSTELKLRALHALASILTSGTD-------RQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPE 406 (503)
T ss_pred HHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHhcCCC-------CchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchH
Confidence 556677777777 777888999999999999754431 11111222222 333334443 78
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhc
Q 039062 473 VAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSS 537 (871)
Q Consensus 473 v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~ 537 (871)
+|.++...|..++..-. +... .-..+.+++.+++.-... ++..+++=+.++..++...
T Consensus 407 lr~a~~~~l~~l~~~~W--g~~~--i~~~~gfie~lldr~~E~---~K~~ke~K~~ii~~l~~~~ 464 (503)
T PF10508_consen 407 LRCAAYRLLQALAAQPW--GQRE--ICSSPGFIEYLLDRSTET---TKEGKEAKYDIIKALAKSS 464 (503)
T ss_pred HHHHHHHHHHHHhcCHH--HHHH--HHhCccHHhhhcCCCCCC---CHHHHHHHHHHHHHHHhcc
Confidence 88888887777764311 0000 001133444444433322 4455555566666666443
No 52
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.29 E-value=7.7e-10 Score=129.69 Aligned_cols=272 Identities=20% Similarity=0.214 Sum_probs=194.4
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHH
Q 039062 94 KTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVN 173 (871)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 173 (871)
.+.|+..|.++++.||..++..|+.+. + ++.++.|...+.++++.+|..|+..|..+.+.. +.
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~----~----~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-~~-------- 685 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETT----P----PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-PP-------- 685 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhc----c----hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-Cc--------
Confidence 356777888999999999999988763 2 567888889999999999999999998876543 11
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHh
Q 039062 174 KILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEK 253 (871)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 253 (871)
.+.+...+. ++++.||.+|+.+|..+-. . . ...+...+.++|+.+|..|+..|..+-.
T Consensus 686 --~~~L~~~L~--~~d~~VR~~A~~aL~~~~~---~-----~-----~~~l~~~L~D~d~~VR~~Av~aL~~~~~----- 743 (897)
T PRK13800 686 --APALRDHLG--SPDPVVRAAALDVLRALRA---G-----D-----AALFAAALGDPDHRVRIEAVRALVSVDD----- 743 (897)
T ss_pred --hHHHHHHhc--CCCHHHHHHHHHHHHhhcc---C-----C-----HHHHHHHhcCCCHHHHHHHHHHHhcccC-----
Confidence 123445666 6899999999999987421 0 0 1234567889999999999999987521
Q ss_pred hHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhccc
Q 039062 254 LAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQE 333 (871)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 333 (871)
. +.+...+.+++.++|..+...+..+.... . ..++.|...+. +
T Consensus 744 ----~----~~l~~~l~D~~~~VR~~aa~aL~~~~~~~-----------------------~----~~~~~L~~ll~--D 786 (897)
T PRK13800 744 ----V----ESVAGAATDENREVRIAVAKGLATLGAGG-----------------------A----PAGDAVRALTG--D 786 (897)
T ss_pred ----c----HHHHHHhcCCCHHHHHHHHHHHHHhcccc-----------------------c----hhHHHHHHHhc--C
Confidence 0 12334678999999999988877664321 0 01333433332 1
Q ss_pred CCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHH
Q 039062 334 EDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSF 413 (871)
Q Consensus 334 ~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~ 413 (871)
+| +.+|.+|..+|..+... +.+.+.+...+.+++|.+|.+|+.+|+.+... ..++.
T Consensus 787 ~d-------~~VR~aA~~aLg~~g~~------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-----------~a~~~ 842 (897)
T PRK13800 787 PD-------PLVRAAALAALAELGCP------PDDVAAATAALRASAWQVRQGAARALAGAAAD-----------VAVPA 842 (897)
T ss_pred CC-------HHHHHHHHHHHHhcCCc------chhHHHHHHHhcCCChHHHHHHHHHHHhcccc-----------chHHH
Confidence 22 57898888887666321 22345577788899999999999999876432 13477
Q ss_pred HHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHH
Q 039062 414 MLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALY 482 (871)
Q Consensus 414 l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~ 482 (871)
+...+ +|+++.||..|.++|+++. .. +...+.|...+.| ++.||..|..+|.
T Consensus 843 L~~~L-~D~~~~VR~~A~~aL~~~~--~~--------------~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 843 LVEAL-TDPHLDVRKAAVLALTRWP--GD--------------PAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHh-cCCCHHHHHHHHHHHhccC--CC--------------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 88899 9999999999999999851 10 2456677777777 7899999998875
No 53
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.2e-06 Score=96.64 Aligned_cols=509 Identities=13% Similarity=0.102 Sum_probs=274.0
Q ss_pred HHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcC-CChHHHHHHHHHHHHHhhccCCCc
Q 039062 88 NVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQ-LPAHVKQATLETLGYLCEEVSPDV 166 (871)
Q Consensus 88 ~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~-~~~~~r~~al~~l~~l~~~~~~~~ 166 (871)
+..+.+...|+..+++.+..||..+|.-++.++... |..--.+.+...+.++.- +++..=++|+.+|..+... ..
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rl-p~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r---Gl 412 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRL-PPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR---GL 412 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccC-cHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc---CC
Confidence 677889999999999999999999999999999886 411112344444443322 2355678999999988764 23
Q ss_pred cchhhHHHHHHHHHhhhcCC------CCCHHHHHHHHHHHHHhhhcch-hcccChhhHHHH-HHHHHHhhccCcHHHHHH
Q 039062 167 VEQDHVNKILTAVVQGMNAS------EMNNDVRLAATRALYNALSFAQ-ANFSNDMERDYI-MRVVCEATQSAELKIRQA 238 (871)
Q Consensus 167 ~~~~~~~~i~~~l~~~l~~~------~~~~~vr~~al~~l~~~~~~~~-~~~~~~~~~~~i-~~~l~~~l~~~~~~~~~~ 238 (871)
+-...++.++|.+.+.+.-. .....||.+|+-.+-.+..... ...+ .....+ ...+...+-|++...|.+
T Consensus 413 Llps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~--p~l~~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 413 LLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLK--PVLQSLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred cchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhh--HHHHHHHHHHHHHHhcCchhhHhHH
Confidence 32566788888888777531 2456799998877766553222 1111 011222 223344566788899999
Q ss_pred HHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhh
Q 039062 239 AFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQAL 318 (871)
Q Consensus 239 a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (871)
|.-++.+.+.+.+.. ||=-.++. ..|.-....--.+|..++..-. + ...|..++
T Consensus 491 AsAAlqE~VGR~~n~--p~Gi~Lis-------~~dy~sV~~rsNcy~~l~~~ia----~------------~~~y~~~~- 544 (1133)
T KOG1943|consen 491 ASAALQENVGRQGNF--PHGISLIS-------TIDYFSVTNRSNCYLDLCVSIA----E------------FSGYREPV- 544 (1133)
T ss_pred HHHHHHHHhccCCCC--CCchhhhh-------hcchhhhhhhhhHHHHHhHHHH----h------------hhhHHHHH-
Confidence 999999988775442 11111111 1111100001123444443210 0 01233333
Q ss_pred hhhHHHHHH-HHhcccCCcccccccc--cHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhh
Q 039062 319 PALVPLLLE-ILLKQEEDQDQEEGAW--NIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSIL 395 (871)
Q Consensus 319 ~~l~~~l~~-~l~~~~~d~~~~~~~~--~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~ 395 (871)
+..++. .+.. | .+|..++.+|..++...++.+....++-+.....+.+...|++...+.+.+.
T Consensus 545 ---f~~L~t~Kv~H-----------Wd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 545 ---FNHLLTKKVCH-----------WDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred ---HHHHHhccccc-----------ccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence 222221 1222 4 4578899999999998887777666665556666777889999999888887
Q ss_pred cCCChhhhhH--------HH---HHHHHHHHHHccCCCc--HHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHH
Q 039062 396 EGPSPDKLLH--------IV---NVALSFMLSALTKDPN--NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITV 462 (871)
Q Consensus 396 ~~~~~~~~~~--------~l---~~i~~~l~~~l~~d~~--~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~ 462 (871)
.++. .+++ .+ +.+++.+...- -+.. ...|.+.+..+.++...... ..........-..
T Consensus 611 ~~~~--~l~~~~~~l~e~~i~~l~~ii~~~~~~~-~~rg~~~lmr~~~~~~Ie~~s~s~~~------~~~~~v~e~~~~l 681 (1133)
T KOG1943|consen 611 GALR--KLEPVIKGLDENRIAGLLSIIPPICDRY-FYRGQGTLMRQATLKFIEQLSLSKDR------LFQDFVIENWQML 681 (1133)
T ss_pred HHhh--hhhhhhhhhHHHHhhhhhhhccHHHHHH-hccchHHHHHHHHHHHHHHhhhccch------hHHHHHHHHHHHH
Confidence 6542 1111 11 11222222111 1111 33455555555544432210 1111222223333
Q ss_pred HHHhccCChHHHHHHHHHHHHHHhhcccCCCCCCCcchH-HHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCc
Q 039062 463 LLQSMKDTPNVAEKACGALYFLAQGYEDVGPSSPLTPFF-QEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDET 541 (871)
Q Consensus 463 l~~~l~d~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~-~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 541 (871)
+.+.+.+...+|..+.+++..++..+-.. .++. .+++...+..+.+.. +..+|.-...+++.+-...-
T Consensus 682 l~~~l~~~n~i~~~av~av~~l~s~y~~~------d~~~~~~li~~~ls~~~~~~--~~~~r~g~~lal~~lp~~~i--- 750 (1133)
T KOG1943|consen 682 LAQNLTLPNQIRDAAVSAVSDLVSTYVKA------DEGEEAPLITRYLSRLTKCS--EERIRRGLILALGVLPSELI--- 750 (1133)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHhc------CchhhhHHHHHHHHHhcCch--HHHHHHHHHHHHccCcHHhh---
Confidence 34444343378999999999988754321 1111 156677777666654 44566555555554432211
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHccc--
Q 039062 542 APMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACR-- 619 (871)
Q Consensus 542 ~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-- 619 (871)
.-..++.+ .+.+-+.. +.+. .++-+.....++..++...+... +....+.+++.+++++++-
T Consensus 751 ~~~~q~~l---c~~~l~~~------p~d~--~a~aR~~~V~al~~v~~~~~~~~-----~~~~~~k~~e~LL~~lddYtt 814 (1133)
T KOG1943|consen 751 HRHLQEKL---CKLVLELL------PSDA--WAEARQQNVKALAHVCKTVTSLL-----FSESIEKFRETLLNALDDYTT 814 (1133)
T ss_pred chHHHHHH---HHHHhccC------cccc--cHHHHHHHHHHHHHHHHHHHHhh-----ccccHHHHHHHHHHHHhhccc
Confidence 11111111 21111111 1111 12334445666666666655221 3445667777777777762
Q ss_pred ------CcchhhhHHHHHHHHHHHhhh-hh-hh-hhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHH
Q 039062 620 ------SATVHEEAMLAIGALAYAAGL-DF-AK-YMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRA 679 (871)
Q Consensus 620 ------~~~~~~~a~~~l~~l~~~~~~-~~-~~-~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 679 (871)
...||++|+.++..+...+.. .+ .+ .+..++-.+++..-++-+ ..|..|+.++..+...
T Consensus 815 d~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKId-rlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 815 DSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKID-RLRELAASALNQIVVH 882 (1133)
T ss_pred ccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhceeec
Confidence 224899999999999877653 11 11 122233323322222222 4467777777766554
No 54
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.1e-05 Score=92.07 Aligned_cols=143 Identities=20% Similarity=0.285 Sum_probs=115.1
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhh
Q 039062 4 EVTQVLLNAQSI--DGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQR 81 (871)
Q Consensus 4 ~l~~~l~~~~s~--~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~ 81 (871)
++..++....+| +++.|.+|.+.+.+++.. ++-+.....++.. +..+.+|++|..+|-+.++. .
T Consensus 11 ~lldavv~~~~~~~s~~~r~eA~~~l~~lke~--~~~~~~~~~iL~~-s~~~~~k~f~Lqlle~vik~-----------~ 76 (1041)
T KOG2020|consen 11 ELLDAVVVTLNPEGSNEERGEAQQILEELKEE--PDSWLQVYLILKL-STNPILKYFALQLLENVIKF-----------R 76 (1041)
T ss_pred HHHHhHHHHhCcccchHHHHHHHHHHHHHHhC--cchHHHHHHHHhc-cCCchhheeeHHHHHHHHHH-----------h
Confidence 456666666554 789999999999999998 6666666677776 46889999999999999874 6
Q ss_pred ccCCCHHHHHHHHHHHHHhhcC----C-----chHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHH
Q 039062 82 WLSLDANVKTQIKTCLLNTLTS----T-----VADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATL 152 (871)
Q Consensus 82 ~~~~~~~~~~~i~~~ll~~l~~----~-----~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al 152 (871)
|+.++.+.+..+|..++..... + ...++.+++.++..|++.+|| +.||++++.+.+... .++..++.++
T Consensus 77 W~~~~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp-~~wp~~i~dl~~~s~-~s~~~~el~m 154 (1041)
T KOG2020|consen 77 WNSLPVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWP-AIWPTFIPDLAQSSK-TSETVCELSM 154 (1041)
T ss_pred cccCCccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHH-hhcchhhhhHHHHhh-cCcccchHHH
Confidence 7788999999999988886442 1 246788999999999999999 799999999999876 3456677778
Q ss_pred HHHHHHhhcc
Q 039062 153 ETLGYLCEEV 162 (871)
Q Consensus 153 ~~l~~l~~~~ 162 (871)
.++..|.++.
T Consensus 155 ~Il~lLsEdv 164 (1041)
T KOG2020|consen 155 IILLLLSEEV 164 (1041)
T ss_pred HHHHHHHHHH
Confidence 8887777764
No 55
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.19 E-value=4.3e-09 Score=123.51 Aligned_cols=275 Identities=18% Similarity=0.201 Sum_probs=193.4
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 039062 38 FLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIA 117 (871)
Q Consensus 38 ~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~ 117 (871)
-+..|...|. +.++.+|..|+..|...- + ....+.|.+.|.+++..||..++..+.
T Consensus 622 ~~~~L~~~L~--D~d~~VR~~Av~~L~~~~------------------~----~~~~~~L~~aL~D~d~~VR~~Aa~aL~ 677 (897)
T PRK13800 622 SVAELAPYLA--DPDPGVRRTAVAVLTETT------------------P----PGFGPALVAALGDGAAAVRRAAAEGLR 677 (897)
T ss_pred hHHHHHHHhc--CCCHHHHHHHHHHHhhhc------------------c----hhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3445666676 458999999999886531 1 235567778899999999999999998
Q ss_pred HHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 039062 118 KVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAAT 197 (871)
Q Consensus 118 ~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al 197 (871)
.+.... + . .+.|...+.++++.+|..++..|..+-... . ..+...+. |+++.||..|+
T Consensus 678 ~l~~~~-~-----~-~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~---------~----~~l~~~L~--D~d~~VR~~Av 735 (897)
T PRK13800 678 ELVEVL-P-----P-APALRDHLGSPDPVVRAAALDVLRALRAGD---------A----ALFAAALG--DPDHRVRIEAV 735 (897)
T ss_pred HHHhcc-C-----c-hHHHHHHhcCCCHHHHHHHHHHHHhhccCC---------H----HHHHHHhc--CCCHHHHHHHH
Confidence 885322 1 1 245566677889999999999998753110 1 13455677 89999999999
Q ss_pred HHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHH
Q 039062 198 RALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVA 277 (871)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 277 (871)
.+|..+- . . +.+...+.++++++|..+...|..+....+. .++.+...++++++.+|
T Consensus 736 ~aL~~~~---~-----~-------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~--------~~~~L~~ll~D~d~~VR 792 (897)
T PRK13800 736 RALVSVD---D-----V-------ESVAGAATDENREVRIAVAKGLATLGAGGAP--------AGDAVRALTGDPDPLVR 792 (897)
T ss_pred HHHhccc---C-----c-------HHHHHHhcCCCHHHHHHHHHHHHHhccccch--------hHHHHHHHhcCCCHHHH
Confidence 9998731 0 0 1245678899999999999999987543221 13344457788999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHH
Q 039062 278 LQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVA 357 (871)
Q Consensus 278 ~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~ 357 (871)
..|+..+..+.... .+.+.+...+. |+ +|.+|.+|..+|..+.
T Consensus 793 ~aA~~aLg~~g~~~----------------------------~~~~~l~~aL~----d~-----d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 793 AAALAALAELGCPP----------------------------DDVAAATAALR----AS-----AWQVRQGAARALAGAA 835 (897)
T ss_pred HHHHHHHHhcCCcc----------------------------hhHHHHHHHhc----CC-----ChHHHHHHHHHHHhcc
Confidence 99998876663310 01122333221 11 2899999999987653
Q ss_pred HHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 039062 358 RTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGR 436 (871)
Q Consensus 358 ~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~ 436 (871)
. +...+.+...+.|++|.+|.+++.+|+.+.. . +...+.+...+ +|+++.||..|..+|..
T Consensus 836 ~-------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~--~--------~~a~~~L~~al-~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 836 A-------DVAVPALVEALTDPHLDVRKAAVLALTRWPG--D--------PAARDALTTAL-TDSDADVRAYARRALAH 896 (897)
T ss_pred c-------cchHHHHHHHhcCCCHHHHHHHHHHHhccCC--C--------HHHHHHHHHHH-hCCCHHHHHHHHHHHhh
Confidence 2 3455777788899999999999999998621 1 12355667888 99999999999998753
No 56
>PRK09687 putative lyase; Provisional
Probab=99.19 E-value=8.1e-09 Score=102.48 Aligned_cols=191 Identities=15% Similarity=0.110 Sum_probs=112.5
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHh
Q 039062 42 LSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAG 121 (871)
Q Consensus 42 l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~ 121 (871)
|...+.+ .+..+|..|+..|+.. . + ..+...+.+++.++++.+|..++.+++.+..
T Consensus 28 L~~~L~d--~d~~vR~~A~~aL~~~-~-----------------~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 28 LFRLLDD--HNSLKRISSIRVLQLR-G-----------------G----QDVFRLAIELCSSKNPIERDIGADILSQLGM 83 (280)
T ss_pred HHHHHhC--CCHHHHHHHHHHHHhc-C-----------------c----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 3344543 3667777777666432 1 1 2344445556667777777777777777643
Q ss_pred hhcCCCCchHHHHHHHHh-hcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 039062 122 IELPQKQWPELIVSLLSN-VHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRAL 200 (871)
Q Consensus 122 ~~~~~~~~~~ll~~L~~~-l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l 200 (871)
.. ..-.+.++.|... +.++++.+|..|..+|+.++... . ......+..+...+. |+++.||..|+.+|
T Consensus 84 ~~---~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~-~-----~~~~~a~~~l~~~~~--D~~~~VR~~a~~aL 152 (280)
T PRK09687 84 AK---RCQDNVFNILNNLALEDKSACVRASAINATGHRCKKN-P-----LYSPKIVEQSQITAF--DKSTNVRFAVAFAL 152 (280)
T ss_pred Cc---cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc-c-----ccchHHHHHHHHHhh--CCCHHHHHHHHHHH
Confidence 21 1134566666655 45566777777777777765432 1 112334444555555 66777777777777
Q ss_pred HHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHH
Q 039062 201 YNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQA 280 (871)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a 280 (871)
+.+- . +..++.+...+.++++++|..|+..|+.+-.. -+...+.++..+.+.+.++|..|
T Consensus 153 g~~~--------~----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~~~~VR~~A 212 (280)
T PRK09687 153 SVIN--------D----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDKNEEIRIEA 212 (280)
T ss_pred hccC--------C----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCCChHHHHHH
Confidence 5421 0 34566677777777777777777777766111 11334445556677777777777
Q ss_pred HHHHHHH
Q 039062 281 IEFWSSI 287 (871)
Q Consensus 281 ~~~~~~l 287 (871)
+..++.+
T Consensus 213 ~~aLg~~ 219 (280)
T PRK09687 213 IIGLALR 219 (280)
T ss_pred HHHHHcc
Confidence 7666554
No 57
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.3e-07 Score=99.13 Aligned_cols=175 Identities=13% Similarity=0.166 Sum_probs=100.1
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChH-HHHHHHHHHHHHhhccCCCccchhhHHH
Q 039062 96 CLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAH-VKQATLETLGYLCEEVSPDVVEQDHVNK 174 (871)
Q Consensus 96 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~-~r~~al~~l~~l~~~~~~~~~~~~~~~~ 174 (871)
.|..-|.++++.|.++|..+|..+|+.. | ..+-.|-|.++..+...+.+ +-...+..|+.+.-.- ......
T Consensus 185 rL~EkLeDpDp~V~SAAV~VICELArKn-P-knyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplE------PRLgKK 256 (877)
T KOG1059|consen 185 RLVEKLEDPDPSVVSAAVSVICELARKN-P-QNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE------PRLGKK 256 (877)
T ss_pred HHHHhccCCCchHHHHHHHHHHHHHhhC-C-cccccccHHHHHHHhccCCCeehHHHHHHHhhccccC------chhhhh
Confidence 3444566666666666666666666665 5 35555555555555433211 2222333333332211 122334
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcch------hcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Q 039062 175 ILTAVVQGMNASEMNNDVRLAATRALYNALSFAQ------ANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISS 248 (871)
Q Consensus 175 i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~------~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~ 248 (871)
+++.+.+.+.+ ..|+..++.++...- ...........-++-+..++.+.|+.++--++-++..++.
T Consensus 257 Lieplt~li~s--------T~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k 328 (877)
T KOG1059|consen 257 LIEPITELMES--------TVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK 328 (877)
T ss_pred hhhHHHHHHHh--------hHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh
Confidence 44444444442 223333333332110 0011111112234555667788899999999999999999
Q ss_pred HhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHH
Q 039062 249 TYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDE 290 (871)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~ 290 (871)
++|..+..|-+-++ +++.|.|+.+|..|++.+..++..
T Consensus 329 tHp~~Vqa~kdlIl----rcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 329 THPKAVQAHKDLIL----RCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred hCHHHHHHhHHHHH----HHhccCCchhHHHHHHHHHHHhhh
Confidence 99988887755444 499999999999999998887664
No 58
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=4e-07 Score=96.48 Aligned_cols=471 Identities=14% Similarity=0.147 Sum_probs=291.6
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhH
Q 039062 179 VVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYM 258 (871)
Q Consensus 179 l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 258 (871)
+.+.|.+ .....+..|++-+-.++.. ... ...+++.+.......+.++++-..--|...++..++.-.-.
T Consensus 40 L~~lLdS--nkd~~KleAmKRIia~iA~---G~d----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLS- 109 (968)
T KOG1060|consen 40 LKQLLDS--NKDSLKLEAMKRIIALIAK---GKD----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLS- 109 (968)
T ss_pred HHHHHhc--cccHHHHHHHHHHHHHHhc---CCc----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeee-
Confidence 3455553 3334555566655554422 221 25566777777777899999998888888887765532211
Q ss_pred HHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCccc
Q 039062 259 QDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQ 338 (871)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~ 338 (871)
+..+-+.+.|+++-+|..|+..+..+= +|.+.|+++-.+.+.-.|+.
T Consensus 110 ---IntfQk~L~DpN~LiRasALRvlSsIR-----------------------------vp~IaPI~llAIk~~~~D~s- 156 (968)
T KOG1060|consen 110 ---INTFQKALKDPNQLIRASALRVLSSIR-----------------------------VPMIAPIMLLAIKKAVTDPS- 156 (968)
T ss_pred ---HHHHHhhhcCCcHHHHHHHHHHHHhcc-----------------------------hhhHHHHHHHHHHHHhcCCc-
Confidence 445556889999999999988876541 22345555444433222221
Q ss_pred ccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHc
Q 039062 339 EEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSAL 418 (871)
Q Consensus 339 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l 418 (871)
-.+|+.|+-++-.+...-++ --+.+...+...+.|.++.+--+|++++..+.... .+.+-++ +..+...+
T Consensus 157 ----~yVRk~AA~AIpKLYsLd~e-~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPer-ldLIHkn----yrklC~ll 226 (968)
T KOG1060|consen 157 ----PYVRKTAAHAIPKLYSLDPE-QKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPER-LDLIHKN----YRKLCRLL 226 (968)
T ss_pred ----HHHHHHHHHhhHHHhcCChh-hHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhH-HHHhhHH----HHHHHhhc
Confidence 26899999888777665443 33478888999999999998888888877765542 2333344 33444555
Q ss_pred cCCCcHHHHHHHHHHHHHHhhhhc-cCC---------------------CCCCccchhhHHHHHHHHHHhccC-ChHHHH
Q 039062 419 TKDPNNHVKDTTAWTLGRIFEFLH-GST---------------------IGTPIITQANCQQIITVLLQSMKD-TPNVAE 475 (871)
Q Consensus 419 ~~d~~~~vr~~a~~~l~~~~~~~~-~~~---------------------~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~ 475 (871)
.|-+..=+-..+..|.+++...- .+. .+.|.....-+.-++...-..+.. ++.|..
T Consensus 227 -~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVm 305 (968)
T KOG1060|consen 227 -PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVM 305 (968)
T ss_pred -cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHH
Confidence 55555555566677777776532 110 001212233344444444445554 788888
Q ss_pred HHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 039062 476 KACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMME 555 (871)
Q Consensus 476 ~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~ 555 (871)
++|.++..++. +. ....|...|+..+... +.++...+.+|..+....+.-|.||+..+.-.
T Consensus 306 A~aql~y~lAP-------~~----~~~~i~kaLvrLLrs~----~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~---- 366 (968)
T KOG1060|consen 306 AVAQLFYHLAP-------KN----QVTKIAKALVRLLRSN----REVQYVVLQNIATISIKRPTLFEPHLKSFFVR---- 366 (968)
T ss_pred HHHhHHHhhCC-------HH----HHHHHHHHHHHHHhcC----CcchhhhHHHHHHHHhcchhhhhhhhhceEee----
Confidence 88888877642 22 3556677777777653 46788999999999999888888887655321
Q ss_pred HHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHH
Q 039062 556 LHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALA 635 (871)
Q Consensus 556 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~ 635 (871)
..|+.. +...=+..|+.++.. .-...|+..+.....+.+..+...+..+||.++
T Consensus 367 -----------ssDp~~---vk~lKleiLs~La~e------------sni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA 420 (968)
T KOG1060|consen 367 -----------SSDPTQ---VKILKLEILSNLANE------------SNISEILRELQTYIKSSDRSFAAAAVKAIGRCA 420 (968)
T ss_pred -----------cCCHHH---HHHHHHHHHHHHhhh------------ccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 122221 122233455555532 234567777777888777777778889999988
Q ss_pred HHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHH
Q 039062 636 YAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSC 715 (871)
Q Consensus 636 ~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~ 715 (871)
...+. .-++++..|+..+++.++ .|...++..|..+.+.-+..- ..++..|.+.+.+-. -...|..++|.
T Consensus 421 ~~~~s----v~~tCL~gLv~Llsshde-~Vv~eaV~vIk~Llq~~p~~h----~~ii~~La~lldti~-vp~ARA~IiWL 490 (968)
T KOG1060|consen 421 SRIGS----VTDTCLNGLVQLLSSHDE-LVVAEAVVVIKRLLQKDPAEH----LEILFQLARLLDTIL-VPAARAGIIWL 490 (968)
T ss_pred HhhCc----hhhHHHHHHHHHHhcccc-hhHHHHHHHHHHHHhhChHHH----HHHHHHHHHHhhhhh-hhhhhceeeee
Confidence 66653 446778888888887755 787888888998888755222 235555555554432 34577788999
Q ss_pred HHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 039062 716 FGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQ 775 (871)
Q Consensus 716 l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~ 775 (871)
+|..+...+ ..++.++..+.+.+... + ..+|-++++....+.-
T Consensus 491 ige~~e~vp----ri~PDVLR~laksFs~E------~-------~evKlQILnL~aKLyl 533 (968)
T KOG1060|consen 491 IGEYCEIVP----RIAPDVLRKLAKSFSDE------G-------DEVKLQILNLSAKLYL 533 (968)
T ss_pred ehhhhhhcc----hhchHHHHHHHHhhccc------c-------chhhHHHHHhhhhheE
Confidence 998777633 23455565665555443 1 3455566665555543
No 59
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.18 E-value=1.4e-07 Score=102.93 Aligned_cols=387 Identities=18% Similarity=0.197 Sum_probs=239.9
Q ss_pred CccHHHHHHHHhcCCCHHHHHHHHHHHHH-HHhhC-hHHHHH-HHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHH
Q 039062 1 MAMEVTQVLLNAQSIDGTVRKHAEESLKQ-FQEQN-LPSFLL-SLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFE 77 (871)
Q Consensus 1 ~~~~l~~~l~~~~s~~~~~r~~A~~~L~~-~~~~~-~~~~~~-~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~ 77 (871)
||+.+...++++.+. +.+.++...++. +...+ ...+.. .++..+.+ + +.+.-..++-+|++.+...
T Consensus 1 ~~~~~~~~l~~l~~~--~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~-~-~~e~v~~~~~iL~~~l~~~------- 69 (503)
T PF10508_consen 1 MEEWINELLEELSSK--AERLEALPELKTELSSSPFLERLPEPVLFDCLNT-S-NREQVELICDILKRLLSAL------- 69 (503)
T ss_pred CchHHHHHHHHHhcc--cchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhh-c-ChHHHHHHHHHHHHHHhcc-------
Confidence 888899999998877 445555555542 22211 112211 14445554 3 2333356667788877531
Q ss_pred HhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCC---CCchHHHHHHHHhhcCCChHHHHHHHHH
Q 039062 78 LVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQ---KQWPELIVSLLSNVHQLPAHVKQATLET 154 (871)
Q Consensus 78 ~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~---~~~~~ll~~L~~~l~~~~~~~r~~al~~ 154 (871)
-.......+++.+..+|.++++.||..++..++.+++..-.. -.-+++++.+..++.+++..+...|..+
T Consensus 70 -------~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~ 142 (503)
T PF10508_consen 70 -------SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKA 142 (503)
T ss_pred -------CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHH
Confidence 122336778889999999999999999999998887643110 1337799999999999999999999999
Q ss_pred HHHHhhccCCCccchhh-HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcH
Q 039062 155 LGYLCEEVSPDVVEQDH-VNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAEL 233 (871)
Q Consensus 155 l~~l~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 233 (871)
|..++..- ..+ ... -..+.+.+...+. .++..+|..++.++..+....+..+..- ....+++.+...+.++|.
T Consensus 143 L~~l~~~~--~~~-~~l~~~~~~~~L~~l~~--~~~~~vR~Rv~el~v~i~~~S~~~~~~~-~~sgll~~ll~eL~~dDi 216 (503)
T PF10508_consen 143 LKKLASHP--EGL-EQLFDSNLLSKLKSLMS--QSSDIVRCRVYELLVEIASHSPEAAEAV-VNSGLLDLLLKELDSDDI 216 (503)
T ss_pred HHHHhCCc--hhH-HHHhCcchHHHHHHHHh--ccCHHHHHHHHHHHHHHHhcCHHHHHHH-HhccHHHHHHHHhcCccH
Confidence 99998753 222 111 1122556666666 5577899999999888765544333211 112378888888888899
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHhHH--HHHHHHHHHhhCCC--h---hHHH-HHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 039062 234 KIRQAAFECLVSISSTYYEKLAPYMQ--DIYSITAKAVREDE--E---PVAL-QAIEFWSSICDEEIDILEEYGSDFTGN 305 (871)
Q Consensus 234 ~~~~~a~~~l~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~--~---~~~~-~a~~~~~~l~~~~~~~~~~~~~~~~~~ 305 (871)
-++..+++++..++..... ..|+. .+++.+...+.+.. + .+.. ..+.|.+.++...
T Consensus 217 Lvqlnalell~~La~~~~g--~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~-------------- 280 (503)
T PF10508_consen 217 LVQLNALELLSELAETPHG--LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS-------------- 280 (503)
T ss_pred HHHHHHHHHHHHHHcChhH--HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC--------------
Confidence 9999999999999984322 33333 35555555554322 2 1221 2234544444310
Q ss_pred CCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHc-CCCcc--------cchHHHHHhhh
Q 039062 306 SDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTV-GDDIV--------PLVIPFIEENI 376 (871)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~-~~~~~--------~~l~~~l~~~l 376 (871)
+..+...+|.++..+.+.+.. .| -+.+..|.++++.++... |..++ ..++..+....
T Consensus 281 -----~~~v~~~~p~~~~~l~~~~~s--~d-------~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~ 346 (503)
T PF10508_consen 281 -----PQEVLELYPAFLERLFSMLES--QD-------PTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAI 346 (503)
T ss_pred -----hHHHHHHHHHHHHHHHHHhCC--CC-------hhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 112233445555555544332 12 256788899999888654 43333 23344444555
Q ss_pred cCCChhhHHHHHHHHHHhhcCCCh---hhhhHHHHHHH---------HHHHHHccCCCcHHHHHHHHHHHHHHhhhhc
Q 039062 377 AKPDWRQREAATYAFGSILEGPSP---DKLLHIVNVAL---------SFMLSALTKDPNNHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 377 ~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~i~---------~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (871)
.+..-..|..++.+++.+...... +.+......++ ..+...+ +.|-|++|.+++..+..++.+-.
T Consensus 347 ~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~-~qPF~elr~a~~~~l~~l~~~~W 423 (503)
T PF10508_consen 347 KSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLL-KQPFPELRCAAYRLLQALAAQPW 423 (503)
T ss_pred cCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHh-cCCchHHHHHHHHHHHHHhcCHH
Confidence 556667899999999999654321 11111111111 1566777 88999999999999999887653
No 60
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.17 E-value=4.7e-10 Score=106.12 Aligned_cols=317 Identities=14% Similarity=0.153 Sum_probs=193.6
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhccc
Q 039062 133 IVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFS 212 (871)
Q Consensus 133 l~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~ 212 (871)
+|.|.+.+.+.+-+....|..-|.++...-...-+..---...+|.+.+++.+ ....-++..|.-++.++.+-...-..
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~-~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDE-IQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHh-cchhHHHHHHHHHHhhhccCcccceE
Confidence 47778878787877777787777776554312222122234567778888853 45556677888888887643211000
Q ss_pred ChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHH--HHHHHHHHHhhCCCh--hHHHHHHHHHHHHH
Q 039062 213 NDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQ--DIYSITAKAVREDEE--PVALQAIEFWSSIC 288 (871)
Q Consensus 213 ~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~--~~~~~a~~~~~~l~ 288 (871)
.. .-...++.+.+++.+++.++|.+++.+|+.++...+.. ..|+- ..++.++..+.+... .+...+--.++.+|
T Consensus 152 vV-vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~-RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc 229 (526)
T COG5064 152 VV-VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC-RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC 229 (526)
T ss_pred EE-EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhH-HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence 00 00234677788888889999999999999998653322 22221 234444445544333 44455555666777
Q ss_pred HHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCC---Ccc
Q 039062 289 DEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGD---DIV 365 (871)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~ 365 (871)
+. +...|..+. +...+|+|.+.+-..+ + .+-..|..++..++....+ .++
T Consensus 230 RG--------------knP~P~w~~----isqalpiL~KLiys~D--~-------evlvDA~WAiSYlsDg~~E~i~avl 282 (526)
T COG5064 230 RG--------------KNPPPDWSN----ISQALPILAKLIYSRD--P-------EVLVDACWAISYLSDGPNEKIQAVL 282 (526)
T ss_pred CC--------------CCCCCchHH----HHHHHHHHHHHHhhcC--H-------HHHHHHHHHHHHhccCcHHHHHHHH
Confidence 62 211122223 3345677766654322 2 2334456666666543221 111
Q ss_pred -cchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhcc
Q 039062 366 -PLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHG 443 (871)
Q Consensus 366 -~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~ 443 (871)
..+.+.+.+.+++++-++.--++..+|.+..+.+ ......+ -..++.+...+ .++...+|..+||+++++......
T Consensus 283 d~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D-~QTqviI~~G~L~a~~~lL-s~~ke~irKEaCWTiSNITAGnte 360 (526)
T COG5064 283 DVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSD-DQTQVIINCGALKAFRSLL-SSPKENIRKEACWTISNITAGNTE 360 (526)
T ss_pred hcCCcHHHHHHhcCccccccCHHHHhhcCeeecCc-cceehheecccHHHHHHHh-cChhhhhhhhhheeecccccCCHH
Confidence 1234446677788888888889999999998753 3333222 35567777778 899999999999999988654321
Q ss_pred CCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhh
Q 039062 444 STIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQG 487 (871)
Q Consensus 444 ~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~ 487 (871)
......-..++|.|+..|.. .-+++..|||++.+...+
T Consensus 361 ------qiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 361 ------QIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ------HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 11122223578888888876 678899999999988654
No 61
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=99.15 E-value=2.7e-05 Score=84.73 Aligned_cols=220 Identities=15% Similarity=0.103 Sum_probs=153.8
Q ss_pred CcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh------hc--c-----cc
Q 039062 620 SATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE------EK--I-----LP 686 (871)
Q Consensus 620 ~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~------~~--~-----~~ 686 (871)
..+.++.++..+..+.+++=-.-.+-...+...++..+++++-..- +...++.+..-.. .. . +.
T Consensus 787 s~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g~~---aa~~fsiim~D~~~~~~r~~~a~~riLykQR 863 (1030)
T KOG1967|consen 787 SLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGPSTGSP---AAKLFSIIMSDSNPLLKRKGHAEPRILYKQR 863 (1030)
T ss_pred CcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCccccch---HHHhhHhhhccChHHhhhccccchhHHHHHH
Confidence 4456778888777777655322222333455556666665433223 3333332221111 01 1 23
Q ss_pred cHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccC-hHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHH
Q 039062 687 YCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN-FEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNG 765 (871)
Q Consensus 687 ~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~-~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~ 765 (871)
++.+++|.+.+.+... ....|...+.+++.+..+.+.. ..|.++.++|.+.+++.-. | ..+|-.
T Consensus 864 fF~~ivP~l~~~~~t~--~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~------D-------~~v~vs 928 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETA--PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMP------D-------VIVRVS 928 (1030)
T ss_pred HHHhhHHHHHHHhccC--CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCC------c-------cchhhh
Confidence 4679999999999855 6779999999999999998865 6699999999999999875 3 346667
Q ss_pred HHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHhHhcc-cccccccchHHHHHHH
Q 039062 766 ILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDM-DELVMKTAIGLLGDLADTLGS-NAGSLIQQSLTSKDFL 843 (871)
Q Consensus 766 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~r~~a~~~l~~i~~~~~~-~~~~~l~~~~~v~~~l 843 (871)
+++++..++... +.....|++.+++.++.+-.+++. .-.+|..|+.|++.+.+..|. ...||-+. |..-+
T Consensus 929 tl~~i~~~l~~~-----~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~---Vl~al 1000 (1030)
T KOG1967|consen 929 TLRTIPMLLTES-----ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPL---VLRAL 1000 (1030)
T ss_pred HhhhhhHHHHhc-----cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHH---HHHHh
Confidence 777887777653 344667899999999998877543 367899999999999997775 46789887 55555
Q ss_pred HHHHcCCChhhHHHHHHHHHHH
Q 039062 844 NECLSSKDHMIKESAEWARLAI 865 (871)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~ 865 (871)
....++...-+|..|+-+++.-
T Consensus 1001 ~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 1001 IKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred hhccCcHHHHHHHHHHHHhhhh
Confidence 6666678889999999888753
No 62
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.09 E-value=4.5e-08 Score=100.62 Aligned_cols=221 Identities=16% Similarity=0.241 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCC-----ChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCC
Q 039062 233 LKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVRED-----EEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSD 307 (871)
Q Consensus 233 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (871)
++++..+++.+....++|.+.+.++++.+++.+|+.+... .+.+...|+.|+..+++... +.
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~-----~~-------- 176 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPH-----HK-------- 176 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHH-----HH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchh-----HH--------
Confidence 4678889999999999999999999999999999988542 23466678999888766321 00
Q ss_pred Cchhhh-HHhhhhhhHH-HHHHHHhcccCC-------cc-------cccccccHhHHHHHHHHHHHHHcCCCcccchHHH
Q 039062 308 IPCFYF-IKQALPALVP-LLLEILLKQEED-------QD-------QEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPF 371 (871)
Q Consensus 308 ~~~~~~-~~~~~~~l~~-~l~~~l~~~~~d-------~~-------~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~ 371 (871)
.-| .++.+..|+. +++..|..+++| +. |..+..+.|.+|.+.+..+++.+++.+.+.+..+
T Consensus 177 ---~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~ 253 (370)
T PF08506_consen 177 ---NLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQY 253 (370)
T ss_dssp ---TTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 001 1333444443 334444433322 11 1224468999999999999999988888877777
Q ss_pred HHhhhc------CCChhhHHHHHHHHHHhhcCCCh-----h------hhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHH
Q 039062 372 IEENIA------KPDWRQREAATYAFGSILEGPSP-----D------KLLHIV-NVALSFMLSALTKDPNNHVKDTTAWT 433 (871)
Q Consensus 372 l~~~l~------~~~~~~r~~a~~~l~~l~~~~~~-----~------~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~ 433 (871)
+...++ +.+|+.+.+|+..+++++..... . .+..++ ..++|.+. .- .+.+|.+|..|++.
T Consensus 254 i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~-~~~~piLka~aik~ 331 (370)
T PF08506_consen 254 IQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PD-VNSHPILKADAIKF 331 (370)
T ss_dssp HHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--S-S-S-HHHHHHHHHH
T ss_pred HHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-cc-CCCCcchHHHHHHH
Confidence 776665 47899999999999999865310 0 122222 23334444 22 46789999999999
Q ss_pred HHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHH
Q 039062 434 LGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGAL 481 (871)
Q Consensus 434 l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l 481 (871)
+..+-..++ ...+..++|.++..|.+ +.-|+..|+.|+
T Consensus 332 ~~~Fr~~l~----------~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 332 LYTFRNQLP----------KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHGGGS-----------HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhhCC----------HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 888877653 56888999999999997 567788887764
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=3.6e-05 Score=82.57 Aligned_cols=432 Identities=14% Similarity=0.181 Sum_probs=242.4
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHH
Q 039062 173 NKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYE 252 (871)
Q Consensus 173 ~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~ 252 (871)
--+...+.+-|+ +++.-+.-.|+-+++++.. .+....+.+-+-++++..++-+|+.|+-|...++...|+
T Consensus 106 lLltNslknDL~--s~nq~vVglAL~alg~i~s--------~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~ 175 (866)
T KOG1062|consen 106 LLLTNSLKNDLN--SSNQYVVGLALCALGNICS--------PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD 175 (866)
T ss_pred HHHHHHHHhhcc--CCCeeehHHHHHHhhccCC--------HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch
Confidence 334455666666 6777777788888888543 234466778888888999999999999999999998888
Q ss_pred hhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcc
Q 039062 253 KLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQ 332 (871)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 332 (871)
...-++..... .+.+.+..+-..++.++..+|+...+. -.+++...+.++..|-+.....
T Consensus 176 l~e~f~~~~~~----lL~ek~hGVL~~~l~l~~e~c~~~~~~----------------l~~fr~l~~~lV~iLk~l~~~~ 235 (866)
T KOG1062|consen 176 LVEHFVIAFRK----LLCEKHHGVLIAGLHLITELCKISPDA----------------LSYFRDLVPSLVKILKQLTNSG 235 (866)
T ss_pred HHHHhhHHHHH----HHhhcCCceeeeHHHHHHHHHhcCHHH----------------HHHHHHHHHHHHHHHHHHhcCC
Confidence 76665554444 566677778788888888888863322 1345556666666655443321
Q ss_pred cCCcccccccccHhHHHHHHHHHHHHHcCCCcccc-hHHHHHhhhcCCChhhHHHHHHHHHHhhcCCCh-hhhh-HHHHH
Q 039062 333 EEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPL-VIPFIEENIAKPDWRQREAATYAFGSILEGPSP-DKLL-HIVNV 409 (871)
Q Consensus 333 ~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-~~~~-~~l~~ 409 (871)
- .++ +++. ..++.++.. ++. +...+...+....+....+|+.++..+.. +... ..+-+
T Consensus 236 y-spe-----ydv~------------gi~dPFLQi~iLr-lLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE 296 (866)
T KOG1062|consen 236 Y-SPE-----YDVH------------GISDPFLQIRILR-LLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYE 296 (866)
T ss_pred C-CCc-----cCcc------------CCCchHHHHHHHH-HHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHH
Confidence 1 111 1111 001111111 111 11222333445555666677777665420 0011 11112
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCCh-HHHHHHHHHHHHHHhhc
Q 039062 410 ALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTP-NVAEKACGALYFLAQGY 488 (871)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~-~v~~~a~~~l~~l~~~~ 488 (871)
.+..+.. -.+++..|..|+.+||+|...-.. .-.|. -+..|...++.++ .|+.
T Consensus 297 ~V~TI~~---I~~~~~LrvlainiLgkFL~n~d~--------NirYv--aLn~L~r~V~~d~~avqr------------- 350 (866)
T KOG1062|consen 297 CVRTIMD---IRSNSGLRVLAINILGKFLLNRDN--------NIRYV--ALNMLLRVVQQDPTAVQR------------- 350 (866)
T ss_pred HHHHHHh---ccCCchHHHHHHHHHHHHhcCCcc--------ceeee--ehhhHHhhhcCCcHHHHH-------------
Confidence 2222221 247778888999998888765431 11121 1333333333222 2221
Q ss_pred ccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChh
Q 039062 489 EDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSD 568 (871)
Q Consensus 489 ~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~ 568 (871)
|- ..++.|++++ |..+|..|++....++.... + ..++..++..+... ++
T Consensus 351 -----------Hr----~tIleCL~Dp---D~SIkrralELs~~lvn~~N--v----~~mv~eLl~fL~~~-------d~ 399 (866)
T KOG1062|consen 351 -----------HR----STILECLKDP---DVSIKRRALELSYALVNESN--V----RVMVKELLEFLESS-------DE 399 (866)
T ss_pred -----------HH----HHHHHHhcCC---cHHHHHHHHHHHHHHhcccc--H----HHHHHHHHHHHHhc-------cH
Confidence 11 1234566666 45788889998888877643 2 33344444444331 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh-H
Q 039062 569 EREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM-P 647 (871)
Q Consensus 569 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l-~ 647 (871)
+.+..+..-+..+++.+.++ -...++.+++.|.....-|+..+...+-.++.........|- .
T Consensus 400 ------~~k~~~as~I~~laEkfaP~----------k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~ 463 (866)
T KOG1062|consen 400 ------DFKADIASKIAELAEKFAPD----------KRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVL 463 (866)
T ss_pred ------HHHHHHHHHHHHHHHhcCCc----------chhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHH
Confidence 24444556666677776554 233445555666665556777777777776655422222222 2
Q ss_pred hHHHHHHhh-hcCCcchhHHHHHHHHHHHHHHHhhh------cccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHH
Q 039062 648 DFYKYLEMG-LQNFEEYQVCAVTVGVVGDICRALEE------KILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIA 720 (871)
Q Consensus 648 ~i~~~l~~~-l~~~~~~~v~~~a~~~l~~l~~~~~~------~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~ 720 (871)
.+.-.+... +.+-+.....+.+.||||....-+-. .....-.+++..+.+.+.+...+..+|..++.++-.+.
T Consensus 464 rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLS 543 (866)
T KOG1062|consen 464 RLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLS 543 (866)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 222222211 11223335688899999987643321 12222367888888887766556778889999998888
Q ss_pred HhhccC
Q 039062 721 LAIGEN 726 (871)
Q Consensus 721 ~~~~~~ 726 (871)
..++..
T Consensus 544 sr~~s~ 549 (866)
T KOG1062|consen 544 SRFHSS 549 (866)
T ss_pred hhcccc
Confidence 877665
No 64
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.04 E-value=0.00013 Score=83.87 Aligned_cols=553 Identities=13% Similarity=0.118 Sum_probs=284.6
Q ss_pred hhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Q 039062 170 DHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISST 249 (871)
Q Consensus 170 ~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 249 (871)
..++.++..++..+. ++...+|..|++|++.+++..+..... +.+...+..-+.+....||.+|++.++.++-.
T Consensus 812 ~sfD~yLk~Il~~l~--e~~ialRtkAlKclS~ive~Dp~vL~~----~dvq~~Vh~R~~DssasVREAaldLvGrfvl~ 885 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVLG--ENAIALRTKALKCLSMIVEADPSVLSR----PDVQEAVHGRLNDSSASVREAALDLVGRFVLS 885 (1692)
T ss_pred HhhHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhcChHhhcC----HHHHHHHHHhhccchhHHHHHHHHHHhhhhhc
Confidence 456777778888888 899999999999999998865544432 56677777778888999999999999999988
Q ss_pred hHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHH
Q 039062 250 YYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEIL 329 (871)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 329 (871)
+++...+|-+.+.+ .+.|+.-.+|..++..+..+|+..+ . ++.+..++.+.+
T Consensus 886 ~~e~~~qyY~~i~e----rIlDtgvsVRKRvIKIlrdic~e~p-------------------d-----f~~i~~~cakml 937 (1692)
T KOG1020|consen 886 IPELIFQYYDQIIE----RILDTGVSVRKRVIKILRDICEETP-------------------D-----FSKIVDMCAKML 937 (1692)
T ss_pred cHHHHHHHHHHHHh----hcCCCchhHHHHHHHHHHHHHHhCC-------------------C-----hhhHHHHHHHHH
Confidence 88877777666665 7788899999999999999988531 1 223345555555
Q ss_pred hcccCCcccccccccHhHHHHHHHHHHHHHcCCCc---------ccchHHHHH-hhhcCCChhhHHHHHHHHHHh----h
Q 039062 330 LKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDI---------VPLVIPFIE-ENIAKPDWRQREAATYAFGSI----L 395 (871)
Q Consensus 330 ~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~---------~~~l~~~l~-~~l~~~~~~~r~~a~~~l~~l----~ 395 (871)
....|++ -++.+-+.+.+..+.-.-.... ++.....+. ......+|...---...-... .
T Consensus 938 rRv~DEE------g~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~ 1011 (1692)
T KOG1020|consen 938 RRVNDEE------GNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMK 1011 (1692)
T ss_pred HHhccch------hHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhh
Confidence 5433322 1344444444433322111110 001111111 111123343221111111111 1
Q ss_pred cCCChhhhhHHHHHHHHHHHHHc-----------cCCCcHHHHH-HHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHH
Q 039062 396 EGPSPDKLLHIVNVALSFMLSAL-----------TKDPNNHVKD-TTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVL 463 (871)
Q Consensus 396 ~~~~~~~~~~~l~~i~~~l~~~l-----------~~d~~~~vr~-~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l 463 (871)
.+.. ......+...+..+..++ ..+.+..+|. +.+.+|..++...+. .....+...+-|.|
T Consensus 1012 ~~~~-~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~------Llt~khv~tL~PYL 1084 (1692)
T KOG1020|consen 1012 ESVK-PVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQ------LLTKKHVITLQPYL 1084 (1692)
T ss_pred hhhh-HHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCch------hccHHHHHHhhhHH
Confidence 1110 110111111222222211 0334445554 445566777766652 33447777778887
Q ss_pred HHhccC--ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCc
Q 039062 464 LQSMKD--TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDET 541 (871)
Q Consensus 464 ~~~l~d--~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 541 (871)
...-.. ..++....+..|.....-+ ...-..++..+=+.|+..+-+.. ...-..+..|++.++......
T Consensus 1085 ~s~~~t~~~~~fl~~vi~Ile~VlPlv-----~~~sesfL~sLEe~L~~~i~k~g---~a~V~~~vsCl~sl~~k~~~~- 1155 (1692)
T KOG1020|consen 1085 TSKASTIEEAQFLYYVIQILECVLPLV-----ANPSESFLASLEEDLLKRIVKMG---MATVVEAVSCLGSLATKRTDG- 1155 (1692)
T ss_pred hccccchHHHHHHHHHHHHHHHHhhhh-----ccchHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHhhhccc-
Confidence 765322 2344444444444333222 11122244444444454444332 233457888999998865432
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCc--hhhhh----hhHHHHHHHHHHH
Q 039062 542 APMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPT--KYVFM----QYADQIMGLFLRV 615 (871)
Q Consensus 542 ~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~----~~~~~i~~~l~~~ 615 (871)
...+..+...+.+.+........ ..-+...++ ...+.+.+++.+++.+.-.... ...+. ...+.++..+.-+
T Consensus 1156 ~~~v~~cf~~~~k~le~~k~s~~-en~~~~~~p-~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f 1233 (1692)
T KOG1020|consen 1156 AKVVKACFSCYLKLLEVIKSSNN-ENADIVNFP-KLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYF 1233 (1692)
T ss_pred hHHHHHHHHHHHHHHHHHHhccc-cccchhhhH-HHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHH
Confidence 23334444444444433211000 011122223 3445888999998865422100 00111 2345566666666
Q ss_pred HcccCcchhhhHHHHHHHHHHHhhhhh-hhhhHhHHHHHHhhhcCCcchhH-HHHHHHHHHHHHHHhhhcccccHHHHHH
Q 039062 616 FACRSATVHEEAMLAIGALAYAAGLDF-AKYMPDFYKYLEMGLQNFEEYQV-CAVTVGVVGDICRALEEKILPYCDGIMT 693 (871)
Q Consensus 616 l~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~l~~i~~~l~~~l~~~~~~~v-~~~a~~~l~~l~~~~~~~~~~~~~~i~~ 693 (871)
....+..+|..|+.++|.++-.-+.-| .+.+..++..++ .+...... +..++..+..+...-...+
T Consensus 1234 ~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~il---a~~n~~~~~ki~~l~n~~~yL~eee~~l--------- 1301 (1692)
T KOG1020|consen 1234 SKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEIL---ADDNSDIKSKIQLLQNLELYLLEEEKKL--------- 1301 (1692)
T ss_pred HHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHH---hhhcccHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 666788899999999999987665544 334444444444 33222122 2333333333222211111
Q ss_pred HHHHHccCCCCCCcCCchHHHHHH---HHHHhhcc------ChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHH
Q 039062 694 QLLKDLSSNQLHRSVKPPIFSCFG---DIALAIGE------NFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRN 764 (871)
Q Consensus 694 ~l~~~l~~~~~~~~v~~~~~~~l~---~i~~~~~~------~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~ 764 (871)
.+...+|. +.+-..-++ ......|. -+..|++.++...+ .. ...+|.
T Consensus 1302 ------~~~~~~w~-~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl----~~-------------d~~~r~ 1357 (1692)
T KOG1020|consen 1302 ------RNKGKNWT-KSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCL----DR-------------DLQVRL 1357 (1692)
T ss_pred ------Hhcccchh-hhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHh----cc-------------chHHHH
Confidence 11100000 000000011 11111111 13345555444333 21 246788
Q ss_pred HHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcc
Q 039062 765 GILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGS 827 (871)
Q Consensus 765 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~ 827 (871)
.+++.+..++..- .+.|- .++|.+..+-.| ....+|.-|-.++.+|-+-+.+
T Consensus 1358 ~aikvl~liL~QG-------LVhP~--~cvPtLIAL~Td--p~~~~r~~Ad~LL~eid~kY~g 1409 (1692)
T KOG1020|consen 1358 VAIKVLKLILNQG-------LVHPV--HCVPTLIALETD--PSQAIRHVADELLKEIDEKYEG 1409 (1692)
T ss_pred HHHHHHHHHHHcc-------CCCcc--chhhhheeecCC--hHHHHHHHHHHHHHHHHHhhHH
Confidence 8888887777651 12222 567777776665 4678899999999999887754
No 65
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=6.6e-05 Score=79.74 Aligned_cols=335 Identities=12% Similarity=0.147 Sum_probs=194.9
Q ss_pred HHHHHHhccCC-hHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcC
Q 039062 460 ITVLLQSMKDT-PNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSST 538 (871)
Q Consensus 460 l~~l~~~l~d~-~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~ 538 (871)
++.++..++++ --.+.+||..+..+-+.+.+ .. .+-++.+...+++++. +-.|+..|..|+..++..-.
T Consensus 462 v~hv~P~f~s~ygfL~Srace~is~~eeDfkd---~~----ill~aye~t~ncl~nn---~lpv~ieAalAlq~fi~~~q 531 (970)
T COG5656 462 VNHVIPAFRSNYGFLKSRACEFISTIEEDFKD---NG----ILLEAYENTHNCLKNN---HLPVMIEAALALQFFIFNEQ 531 (970)
T ss_pred HHHhhHhhcCcccchHHHHHHHHHHHHHhccc---ch----HHHHHHHHHHHHHhcC---CcchhhhHHHHHHHHHhchh
Confidence 33344444443 24588999999888655543 22 3455566666677663 45789999999999998764
Q ss_pred --CCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHH--
Q 039062 539 --DETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLR-- 614 (871)
Q Consensus 539 --~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~-- 614 (871)
+.+..+++.+|+.++..-+.. +- ..+..++..++..++.+ +.|+++.+...+.+
T Consensus 532 ~h~k~sahVp~tmekLLsLSn~f-------ei---------D~LS~vMe~fVe~fseE------Lspfa~eLa~~Lv~qF 589 (970)
T COG5656 532 SHEKFSAHVPETMEKLLSLSNTF-------EI---------DPLSMVMESFVEYFSEE------LSPFAPELAGSLVRQF 589 (970)
T ss_pred hhHHHHhhhhHHHHHHHHhcccc-------cc---------hHHHHHHHHHHHHhHHh------hchhHHHHHHHHHHHH
Confidence 346667777777776654332 11 12557888899998887 88888777766655
Q ss_pred --HHc----cc---CcchhhhHHHH------HHHHHHHhh--hhhhhhh-HhHHHHHHhhhcCCcchhHHHHHHHHHHHH
Q 039062 615 --VFA----CR---SATVHEEAMLA------IGALAYAAG--LDFAKYM-PDFYKYLEMGLQNFEEYQVCAVTVGVVGDI 676 (871)
Q Consensus 615 --~l~----~~---~~~~~~~a~~~------l~~l~~~~~--~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l 676 (871)
+.+ .+ .+.+-+.-+.| +.+++-.+. +.+.+++ ..+.|.+.-.+.+... +.-..|+..+...
T Consensus 590 lkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~-dfy~Ea~dildg~ 668 (970)
T COG5656 590 LKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEIS-DFYQEALDILDGY 668 (970)
T ss_pred HHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHhhh
Confidence 222 22 11122222222 333333332 2344455 3466766666654433 5666777777665
Q ss_pred HHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChH---HhHHHHHHHHHHHHhhcccCCCCCh
Q 039062 677 CRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFE---KYLMYAMPMLQSAADLSAHTANVDD 753 (871)
Q Consensus 677 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~---~~~~~i~~~l~~~l~~~~~~~~~d~ 753 (871)
.-... .+.|-...+.+.+.+++.++.. ..--..+..++.++....+..|. -|...++..+..++... +
T Consensus 669 tf~sk-eI~pimwgi~Ell~~~l~~~~t-~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE------~- 739 (970)
T COG5656 669 TFMSK-EIEPIMWGIFELLLNLLIDEIT-AVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSE------E- 739 (970)
T ss_pred hHHHH-HhhhhhhHHHHHHHhcccccch-hhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcch------h-
Confidence 43333 4556677888888888776632 23345677788888888777665 46666667777776553 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccc
Q 039062 754 DMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLI 833 (871)
Q Consensus 754 ~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l 833 (871)
++..+ +..+++.+..++-.+++. .+..|+|-++..+-..++-.+.....+..+++++-.-.-.-|..-.+++
T Consensus 740 ---n~l~D-~~~vc~i~e~l~Ln~rd~----Ll~qy~plfi~vags~l~~~dElg~~sv~aleliinnli~~P~eTLqiL 811 (970)
T COG5656 740 ---NFLED-FIGVCRIIESLILNIRDE----LLSQYLPLFISVAGSGLKMIDELGPASVYALELIINNLILRPKETLQIL 811 (970)
T ss_pred ---hhHHH-HHHHHHHHHHHHHHccch----hHHhhhHHHHHHHhhhhhccccccchhhhHHHHHHHHHhcChHHHHHHH
Confidence 12222 346788888888887653 4556787777766544332222334466666655443333333333344
Q ss_pred cchHHHHHHHH
Q 039062 834 QQSLTSKDFLN 844 (871)
Q Consensus 834 ~~~~~v~~~l~ 844 (871)
..+-|...++.
T Consensus 812 e~qg~l~~FF~ 822 (970)
T COG5656 812 EEQGYLQSFFE 822 (970)
T ss_pred HHcCcHHHHHH
Confidence 33333333333
No 66
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=99.02 E-value=8e-10 Score=86.64 Aligned_cols=76 Identities=38% Similarity=0.525 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhc
Q 039062 23 AEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLT 102 (871)
Q Consensus 23 A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~ 102 (871)
||++|++++.++ |+|+..|++++.+++.+..+|++|+++|||.|.++|.... ...|..++++.|..||+.+++.|.
T Consensus 1 AE~~L~~~~~~~-p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~---~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQN-PGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSK---QKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSC-TCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHH---HHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhh---ccCCCCCCHHHHHHHHHHHHHHHc
Confidence 899999999998 8999999999988788999999999999999999998654 467889999999999999999874
No 67
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=0.00012 Score=78.58 Aligned_cols=282 Identities=14% Similarity=0.126 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCChH-HHHHHHHHHHHHHhhcccCCCCCCCcchHHHHH
Q 039062 427 KDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPN-VAEKACGALYFLAQGYEDVGPSSPLTPFFQEIV 505 (871)
Q Consensus 427 r~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~-v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il 505 (871)
+.++..+.|..+..+.+- ..+..-....++|.+. .-.++.| +|.+.++.++..+. .......-+...
T Consensus 461 KDAiYaa~g~~a~~l~~~----~dF~~Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvs-------vq~~~e~k~l~Y 528 (978)
T KOG1993|consen 461 KDAIYAAFGLAAYELSNI----LDFDKWLQEALLPELA-NDHGNSRIIRRRVAWILGQWVS-------VQQKLELKPLLY 528 (978)
T ss_pred HHHHHHHHHHHHHHHHhc----CCHHHHHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhh-------eechHhHHHHHH
Confidence 344444555544444321 1222333344555554 1112344 48888898877654 222233344556
Q ss_pred HHHHHhhccCChhhhhHHHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHH
Q 039062 506 QSLLTVTHREDAGESRLRTAAYETLNEVVRSST---DETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCG 582 (871)
Q Consensus 506 ~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (871)
..+++.+.+.+ |.-+|.++..++...++... +.|.||++.+...+++.+...-+ - +.+..++.
T Consensus 529 ~a~lnLL~d~~--D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e------~------Dtk~~VL~ 594 (978)
T KOG1993|consen 529 CAFLNLLQDQN--DLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEE------C------DTKTSVLN 594 (978)
T ss_pred HHHHHhcCccc--cceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhh------h------hhHHHHHH
Confidence 66677777664 56789999999999998765 67899999999999988876421 1 23456889
Q ss_pred HHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHccc--CcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhc--
Q 039062 583 CLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACR--SATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQ-- 658 (871)
Q Consensus 583 ~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-- 658 (871)
.++.++...++. ++|++..++..+-.+.+.. ++-+|.+.+.++..++..+|..-.++.+-++|.+.-+..
T Consensus 595 ~ls~lI~r~~e~------I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~ 668 (978)
T KOG1993|consen 595 LLSTLIERVSEH------IAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPS 668 (978)
T ss_pred HHHHHHHHHHHh------hhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCC
Confidence 999999998876 8899888888877777654 455888889999999999997666666777776654432
Q ss_pred CCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccCh-HHhHHHHHHH
Q 039062 659 NFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENF-EKYLMYAMPM 737 (871)
Q Consensus 659 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~-~~~~~~i~~~ 737 (871)
+++..-....+..+.+....+. ..+.|-+-.++|.++..++.+ .+.-+.++..+...+.-.+..| ..|...++..
T Consensus 669 sP~hv~L~EDgmeLW~~~L~n~-~~l~p~ll~L~p~l~~~iE~s---te~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~ 744 (978)
T KOG1993|consen 669 SPEHVYLLEDGMELWLTTLMNS-QKLTPELLLLFPHLLYIIEQS---TENLPTVLMIISSYILLDNTVFLNDYAFGIFKK 744 (978)
T ss_pred CCceeehhhhHHHHHHHHHhcc-cccCHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 2222234456777777666655 345566667777777777654 3445666666666555545443 3677777777
Q ss_pred HHHHHhh
Q 039062 738 LQSAADL 744 (871)
Q Consensus 738 l~~~l~~ 744 (871)
+.+.+.+
T Consensus 745 ~~~~l~d 751 (978)
T KOG1993|consen 745 LNDLLDD 751 (978)
T ss_pred HHHHHHH
Confidence 7666654
No 68
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=0.00013 Score=77.28 Aligned_cols=252 Identities=15% Similarity=0.244 Sum_probs=161.7
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhh
Q 039062 217 RDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILE 296 (871)
Q Consensus 217 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~ 296 (871)
...+-+-++.++++.-+-+|+.|+-.+-.+...||+.+.+.++.+.+ .+.++|+.+...|..++..+++..
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~E----kLeDpDp~V~SAAV~VICELArKn----- 212 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVE----KLEDPDPSVVSAAVSVICELARKN----- 212 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHH----hccCCCchHHHHHHHHHHHHHhhC-----
Confidence 35567778888888899999999999999999999999999888887 889999999999999988887742
Q ss_pred hhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcC--CCcccchHHHHHh
Q 039062 297 EYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVG--DDIVPLVIPFIEE 374 (871)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~l~~~l~~ 374 (871)
.++|+ .+.|.+++.|+....+ |-+- +.++-++...+ ......+++-+.+
T Consensus 213 -------------PknyL-----~LAP~ffkllttSsNN-------WmLI----KiiKLF~aLtplEPRLgKKLieplt~ 263 (877)
T KOG1059|consen 213 -------------PQNYL-----QLAPLFYKLLVTSSNN-------WVLI----KLLKLFAALTPLEPRLGKKLIEPITE 263 (877)
T ss_pred -------------Ccccc-----cccHHHHHHHhccCCC-------eehH----HHHHHHhhccccCchhhhhhhhHHHH
Confidence 12333 3577788887754333 8653 33444443322 1122233344444
Q ss_pred hhcCCChhhHHHHHHHHHHhhc-----CCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCC
Q 039062 375 NIAKPDWRQREAATYAFGSILE-----GPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTP 449 (871)
Q Consensus 375 ~l~~~~~~~r~~a~~~l~~l~~-----~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 449 (871)
.+.+..- .-.-+-|+..+.. +. ++. ...+.-.+..+-..+ .|.++..++-++.+++.++...+
T Consensus 264 li~sT~A--mSLlYECvNTVVa~s~s~g~-~d~-~asiqLCvqKLr~fi-edsDqNLKYlgLlam~KI~ktHp------- 331 (877)
T KOG1059|consen 264 LMESTVA--MSLLYECVNTVVAVSMSSGM-SDH-SASIQLCVQKLRIFI-EDSDQNLKYLGLLAMSKILKTHP------- 331 (877)
T ss_pred HHHhhHH--HHHHHHHHHHheeehhccCC-CCc-HHHHHHHHHHHhhhh-hcCCccHHHHHHHHHHHHhhhCH-------
Confidence 4433221 0111123333332 22 121 223445667777788 99999999999999999987653
Q ss_pred ccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHH
Q 039062 450 IITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYE 528 (871)
Q Consensus 450 ~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~ 528 (871)
.....--..++++|.| ++.+|.+|...+..++. .+ .+..|+..|+..+...+ ....|...
T Consensus 332 ----~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs-------kk----Nl~eIVk~LM~~~~~ae--~t~yrdel-- 392 (877)
T KOG1059|consen 332 ----KAVQAHKDLILRCLDDKDESIRLRALDLLYGMVS-------KK----NLMEIVKTLMKHVEKAE--GTNYRDEL-- 392 (877)
T ss_pred ----HHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhh-------hh----hHHHHHHHHHHHHHhcc--chhHHHHH--
Confidence 3444555667888888 78999999998887754 22 35566666666655544 22445433
Q ss_pred HHHHHHHhcC
Q 039062 529 TLNEVVRSST 538 (871)
Q Consensus 529 ~l~~l~~~~~ 538 (871)
+..++..+.
T Consensus 393 -l~~II~iCS 401 (877)
T KOG1059|consen 393 -LTRIISICS 401 (877)
T ss_pred -HHHHHHHhh
Confidence 344444443
No 69
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=0.00015 Score=77.96 Aligned_cols=261 Identities=13% Similarity=0.116 Sum_probs=146.4
Q ss_pred hHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCC
Q 039062 368 VIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIG 447 (871)
Q Consensus 368 l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 447 (871)
....+-+++.+.+-+.|+.|+..|..+...- +..+..|= ..++.++ +|+++.+|..|+..+..+..
T Consensus 314 ainiLgkFL~n~d~NirYvaLn~L~r~V~~d-~~avqrHr----~tIleCL-~DpD~SIkrralELs~~lvn-------- 379 (866)
T KOG1062|consen 314 AINILGKFLLNRDNNIRYVALNMLLRVVQQD-PTAVQRHR----STILECL-KDPDVSIKRRALELSYALVN-------- 379 (866)
T ss_pred HHHHHHHHhcCCccceeeeehhhHHhhhcCC-cHHHHHHH----HHHHHHh-cCCcHHHHHHHHHHHHHHhc--------
Confidence 3444556667777789999998888888764 45555553 3567899 99999999999988665542
Q ss_pred CCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHH
Q 039062 448 TPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAA 526 (871)
Q Consensus 448 ~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a 526 (871)
...+..++..++..|.. ++.++..++.-+..+++.+.+. =.=|++.++. ++....+ -++..+
T Consensus 380 -----~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~-----k~W~idtml~-Vl~~aG~------~V~~dv 442 (866)
T KOG1062|consen 380 -----ESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPD-----KRWHIDTMLK-VLKTAGD------FVNDDV 442 (866)
T ss_pred -----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCc-----chhHHHHHHH-HHHhccc------ccchhh
Confidence 33456788888888875 6677777777777777665431 0113333332 2222222 244455
Q ss_pred HHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhH
Q 039062 527 YETLNEVVRSSTDETAP-MVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYA 605 (871)
Q Consensus 527 ~~~l~~l~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 605 (871)
...+-.++......... ....++..+....... .+ . ..+..-+.||++.-..-+-......+....--
T Consensus 443 ~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~-------is-~---e~l~qVa~W~IGEYGdlll~~~~~~~p~~vte 511 (866)
T KOG1062|consen 443 VNNLLRLIANAFQELHEYAVLRLYLALSEDTLLD-------IS-Q---EPLLQVASWCIGEYGDLLLDGANEEEPIKVTE 511 (866)
T ss_pred HHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhh-------hh-h---hhHHHHHHHHhhhhhHHhhcCccccCCCcCCH
Confidence 55555555555322222 2223333322211000 00 1 12344577888766533221100011122223
Q ss_pred HHHHHHHHHHHccc--CcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHH
Q 039062 606 DQIMGLFLRVFACR--SATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGD 675 (871)
Q Consensus 606 ~~i~~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~ 675 (871)
..++..+...+... +..++..++.|+..+...+... .+-+.+++- .+...-+.++++.|++.=.-
T Consensus 512 sdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~-~~ri~~lI~----~~~~s~~~elQQRa~E~~~l 578 (866)
T KOG1062|consen 512 SDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS-SERIKQLIS----SYKSSLDTELQQRAVEYNAL 578 (866)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc-HHHHHHHHH----HhcccccHHHHHHHHHHHHH
Confidence 56777777777653 4567888899998887666543 233333333 23333355788877775433
No 70
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.93 E-value=0.00012 Score=82.49 Aligned_cols=179 Identities=17% Similarity=0.199 Sum_probs=127.5
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchh-HHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCC
Q 039062 624 HEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQ-VCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSN 702 (871)
Q Consensus 624 ~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 702 (871)
|+.|-.+|..+++.+|..+...++.+...++..+++..+.+ .....+.++..+...++..+.+ +.+..+.++....+.
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~ 828 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSI 828 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccc
Confidence 67788899999999999988888999898888887543322 3334455555555555666766 667788888888877
Q ss_pred CCCCcCCchHHHHHHHHHHhhcc-ChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCc
Q 039062 703 QLHRSVKPPIFSCFGDIALAIGE-NFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSP 781 (871)
Q Consensus 703 ~~~~~v~~~~~~~l~~i~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~ 781 (871)
+..+|..++.|++.+.+.... .+.-.++.++|.+- .+.+ ..=|+++...+..+...+
T Consensus 829 --~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~-~~~~---------------~~~r~~a~e~~~~l~~~l---- 886 (1549)
T KOG0392|consen 829 --HIAVRYAAARCIGTMFKSATRETMATVINGFLPLLG-DLDK---------------FVRRQGADELIELLDAVL---- 886 (1549)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-chhh---------------HhhhhhHHHHHHHHHHhh----
Confidence 788999999999999877544 34455555555443 2211 112344555555555443
Q ss_pred cccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhccc
Q 039062 782 KTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSN 828 (871)
Q Consensus 782 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~ 828 (871)
...+.||.+-+++.+.+++.| ..+++|.++..+++.+....|-+
T Consensus 887 -~~~l~~~~~Llv~pllr~msd--~~d~vR~aat~~fa~lip~~~le 930 (1549)
T KOG0392|consen 887 -MVGLVPYNPLLVVPLLRRMSD--QIDSVREAATKVFAKLIPLLPLE 930 (1549)
T ss_pred -cccccccceeehhhhhccccc--chHHHHHHHHHHHHHHhcccccc
Confidence 234778999999999999886 57889999999999999988744
No 71
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.91 E-value=1e-06 Score=88.08 Aligned_cols=514 Identities=14% Similarity=0.115 Sum_probs=261.1
Q ss_pred hHHHHHHHHHHHHHHhhh----cCCCCchHHHHH---------HHHhhcCCChHHHHHHHHHHHHHhhcc----------
Q 039062 106 ADARSTSSQVIAKVAGIE----LPQKQWPELIVS---------LLSNVHQLPAHVKQATLETLGYLCEEV---------- 162 (871)
Q Consensus 106 ~~vr~~~a~~l~~i~~~~----~~~~~~~~ll~~---------L~~~l~~~~~~~r~~al~~l~~l~~~~---------- 162 (871)
..||..+-.++....+.. +. +.|..++|. +.-.+.++++.-|..|+.++..+.+..
T Consensus 10 akvr~~al~~~~~~~~~~~~~~~y-gyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 10 AKVRQGALVCFLSTIKSIEKKVLY-GYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHHHhhHHHHHHHHHhhhhhhhhh-ceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 466666666666554431 11 467666553 233456778888999999988876643
Q ss_pred CCCccch------hhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHH
Q 039062 163 SPDVVEQ------DHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIR 236 (871)
Q Consensus 163 ~~~~~~~------~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 236 (871)
++.-|.. .........++..+.. +.++.+-...++|+.+++...+-.-..-.+...+.+.+...+.+.|+.++
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~-e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~ 167 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVA-ESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVR 167 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChh
Confidence 1222210 1222333445555543 66777888899999999876542211122345678888889999999999
Q ss_pred HHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChh-HHHHHHHHHHHHHHHHHhhhhhhc------CC--------
Q 039062 237 QAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEP-VALQAIEFWSSICDEEIDILEEYG------SD-------- 301 (871)
Q Consensus 237 ~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~a~~~~~~l~~~~~~~~~~~~------~~-------- 301 (871)
..++-.+..++.+... .|.+...++.- -.+.+.. -....-+-|..++.....+.-+.. ..
T Consensus 168 vs~l~~~~~~v~t~~~--~pei~~~~~~~---~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~ 242 (728)
T KOG4535|consen 168 VSSLTLLGAIVSTHAP--LPEVQLLLQQP---CSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCI 242 (728)
T ss_pred hHHHHHHHHHHhcCCC--CHHHHHHhcCC---CccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeee
Confidence 9999999999876311 12222111100 0000000 000111223333221111000000 00
Q ss_pred ------CC------------CCCCC------chh----------hhHHhhhhhhHHHHHHHHhcccCCcccccccccHhH
Q 039062 302 ------FT------------GNSDI------PCF----------YFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAM 347 (871)
Q Consensus 302 ------~~------------~~~~~------~~~----------~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~ 347 (871)
.+ ++... .+. ...+.++-++...+...+ .+-++ .+..
T Consensus 243 ~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~--~~~~p-------~~~l 313 (728)
T KOG4535|consen 243 SIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCM--GEADP-------SIQL 313 (728)
T ss_pred eeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--CCCCh-------HHHH
Confidence 00 00000 011 111222222222222222 11222 2333
Q ss_pred HHHHHHHHHHHHcCCCcccch----------HHHHH------hhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHH
Q 039062 348 AGGTCLGLVARTVGDDIVPLV----------IPFIE------ENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVAL 411 (871)
Q Consensus 348 ~a~~~l~~l~~~~~~~~~~~l----------~~~l~------~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~ 411 (871)
.+..++..+....+.+..|.- .-.+. ..-.+....-+-+.+.++..|.... ...+...-....
T Consensus 314 ~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~-f~~lpn~~~T~~ 392 (728)
T KOG4535|consen 314 HGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEA-FSNLPNDRQTLC 392 (728)
T ss_pred HHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchh-hcCCCCcchhhh
Confidence 456777776665543332211 11110 0111222334555666666655432 122211112344
Q ss_pred HHHHHHccCC-CcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcc
Q 039062 412 SFMLSALTKD-PNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYE 489 (871)
Q Consensus 412 ~~l~~~l~~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~ 489 (871)
+.++.+. +| .+..|+.+|..+++-+.-+-.. .....+.......++..+.| .-.+|+.++|+++++.+.+-
T Consensus 393 ~~Fl~GC-~d~~~~lv~~aA~Ra~~VyVLHp~l------r~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~ 465 (728)
T KOG4535|consen 393 ITFLLGC-NDSKNRLVKAAASRALGVYVLHPCL------RQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALI 465 (728)
T ss_pred HHHHhcc-cchHHHHHHHHHHhhceeEEeccch------hhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHH
Confidence 5555566 54 4555788888886655443321 11234556667777778877 56889999999999988765
Q ss_pred cCCC--CCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCCh
Q 039062 490 DVGP--SSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSS 567 (871)
Q Consensus 490 ~~~~--~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~ 567 (871)
...+ .+.-..+....+..+.......+....+|+..++.+++++......-..+-+..+++.-+..+-...
T Consensus 466 ~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v------- 538 (728)
T KOG4535|consen 466 VNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTV------- 538 (728)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccce-------
Confidence 4321 1122233344454555444444333568999999999999876543222222333332222211110
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcc-cCcchhhhHHHHHHHHHHHhhhhhhhhh
Q 039062 568 DEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFAC-RSATVHEEAMLAIGALAYAAGLDFAKYM 646 (871)
Q Consensus 568 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~l 646 (871)
-..-...++-.+|.+++++.+.-.-. -.-.++++.+++.+..++.+ .+..+|-.|..++..-.+- .++...+
T Consensus 539 -~~~~~~kV~WNaCya~gNLfkn~a~~----lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r--e~~~d~~ 611 (728)
T KOG4535|consen 539 -LTEAAMKVRWNACYAMGNLFKNPALP----LQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR--EQYGDQY 611 (728)
T ss_pred -ecccccccchHHHHHHHHhhcCcccc----ccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc--ccchhHH
Confidence 00011247778999999998642210 00235788899999998877 4778998888877765433 2344445
Q ss_pred HhHHHHHHhhh
Q 039062 647 PDFYKYLEMGL 657 (871)
Q Consensus 647 ~~i~~~l~~~l 657 (871)
+-.+..++..+
T Consensus 612 ~Lsw~~lv~aL 622 (728)
T KOG4535|consen 612 ALSWNALVTAL 622 (728)
T ss_pred hHHHHHHHHHH
Confidence 54555444444
No 72
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=6.2e-06 Score=88.41 Aligned_cols=254 Identities=15% Similarity=0.110 Sum_probs=164.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCC--CCChhHHHHHHHHHHcccccchhhhHHHHhhhc
Q 039062 5 VTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELAND--DKPVDSRKLAGLILKNALDAKEQHRKFELVQRW 82 (871)
Q Consensus 5 l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~--~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~ 82 (871)
|-.++..+...|-+.++....+|..+...+|...+. ..+.+... +.++-+|.+|.......=
T Consensus 51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~-avnt~~kD~~d~np~iR~lAlrtm~~l~--------------- 114 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAIL-AVNTFLKDCEDPNPLIRALALRTMGCLR--------------- 114 (734)
T ss_pred hHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHh-hhhhhhccCCCCCHHHHHHHhhceeeEe---------------
Confidence 455667777778889999999998877765444333 33333332 457788888875553311
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcc
Q 039062 83 LSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEV 162 (871)
Q Consensus 83 ~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~ 162 (871)
-+....++.+.+.+++.+.++.+|+.++.+++.+.......-.-..+++.|..++.++++.+...|+.++..|.+.-
T Consensus 115 ---v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 115 ---VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred ---ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 13345678889999999999999999999999998765222234668888888888999999999999999999876
Q ss_pred CCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHH
Q 039062 163 SPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFEC 242 (871)
Q Consensus 163 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~ 242 (871)
++.........+...++..++ +.+.=-+...++++.. +.+... .....+++.+...+++.++.+...+.+.
T Consensus 192 -~~~~~~~l~~~~~~~lL~al~--ec~EW~qi~IL~~l~~---y~p~d~---~ea~~i~~r~~p~Lqh~n~avvlsavKv 262 (734)
T KOG1061|consen 192 -PSVNLLELNPQLINKLLEALN--ECTEWGQIFILDCLAE---YVPKDS---REAEDICERLTPRLQHANSAVVLSAVKV 262 (734)
T ss_pred -CCCCcccccHHHHHHHHHHHH--HhhhhhHHHHHHHHHh---cCCCCc---hhHHHHHHHhhhhhccCCcceEeehHHH
Confidence 432112223344444555554 3333334455555555 433221 2236688888888888888888899999
Q ss_pred HHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHH
Q 039062 243 LVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSI 287 (871)
Q Consensus 243 l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l 287 (871)
+..++......-......+.+.+...+.... ++...|+.-+..+
T Consensus 263 ~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~li 306 (734)
T KOG1061|consen 263 ILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLI 306 (734)
T ss_pred HHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHH
Confidence 8888876655333333344443333333333 5555555544333
No 73
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.90 E-value=2.9e-07 Score=102.07 Aligned_cols=317 Identities=14% Similarity=0.157 Sum_probs=201.8
Q ss_pred HHHHHHHhhcCC-ChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhc
Q 039062 132 LIVSLLSNVHQL-PAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQAN 210 (871)
Q Consensus 132 ll~~L~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 210 (871)
+++.+..++.+- ..+-|..|++.+..+...... ...++.++|-++.++. |+..+||..|+.++..++....+.
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d----e~~LDRVlPY~v~l~~--Ds~a~Vra~Al~Tlt~~L~~Vr~~ 496 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD----EVKLDRVLPYFVHLLM--DSEADVRATALETLTELLALVRDI 496 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch----HHHHhhhHHHHHHHhc--CchHHHHHHHHHHHHHHHhhccCC
Confidence 455566665553 345677899999888776522 3568899999999998 999999999999999988765432
Q ss_pred cc--ChhhHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHH
Q 039062 211 FS--NDMERDYIMRVVCEATQS-AELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSI 287 (871)
Q Consensus 211 ~~--~~~~~~~i~~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l 287 (871)
.- ...+.+++++.+..++.+ ....+|.+-..+|..++...+.++.--. .+-. -....+++.+. .
T Consensus 497 ~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q-~~~~--~g~~n~~nset----------~ 563 (1431)
T KOG1240|consen 497 PPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQ-ELRQ--AGMLNDPNSET----------A 563 (1431)
T ss_pred CcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHH-HHHh--cccccCccccc----------c
Confidence 21 112447788888888887 5567888888999999987655433110 0000 00012222210 0
Q ss_pred HHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCC-ccc
Q 039062 288 CDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDD-IVP 366 (871)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~ 366 (871)
.+.. .......+...+-......++. .+ -.+|++-.+.|..||..+|++ --+
T Consensus 564 ~~~~------------------~~~~~~~L~~~V~~~v~sLlsd--~~-------~~Vkr~Lle~i~~LC~FFGk~ksND 616 (1431)
T KOG1240|consen 564 PEQN------------------YNTELQALHHTVEQMVSSLLSD--SP-------PIVKRALLESIIPLCVFFGKEKSND 616 (1431)
T ss_pred cccc------------------cchHHHHHHHHHHHHHHHHHcC--Cc-------hHHHHHHHHHHHHHHHHhhhccccc
Confidence 0000 0001111111111112222221 11 267888888899999999854 345
Q ss_pred chHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCC
Q 039062 367 LVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTI 446 (871)
Q Consensus 367 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~ 446 (871)
.+++++..++++.+|..|-+-+.-+.-++-..+...+.++ ++|.+.+.+ .|+.+.|-..|+.++..+++.-
T Consensus 617 ~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~sey---llPLl~Q~l-tD~EE~Viv~aL~~ls~Lik~~----- 687 (1431)
T KOG1240|consen 617 VILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEY---LLPLLQQGL-TDGEEAVIVSALGSLSILIKLG----- 687 (1431)
T ss_pred chHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHH---HHHHHHHhc-cCcchhhHHHHHHHHHHHHHhc-----
Confidence 7888999999999999998844444433333333334544 689999999 9999999999999998888754
Q ss_pred CCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHH
Q 039062 447 GTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQ 506 (871)
Q Consensus 447 ~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~ 506 (871)
.....+..+++......|.- +.-||.++|..+....+.+...-..-.+.|++.+.+.
T Consensus 688 ---ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 688 ---LLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred ---ccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 34455666666666666653 5678999999888887766543223345555555544
No 74
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.90 E-value=0.00014 Score=74.81 Aligned_cols=477 Identities=13% Similarity=0.098 Sum_probs=249.6
Q ss_pred CCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCc-HHHHHHHHHH
Q 039062 164 PDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAE-LKIRQAAFEC 242 (871)
Q Consensus 164 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~~~~~a~~~ 242 (871)
++.+.+.....++-.+.+.++ +.++.+|.....++..+-....+. -.....++.-++.+. ..+|-.|++.
T Consensus 55 ge~f~e~~at~lff~i~KlFQ--hkd~~Lrq~VY~aIkelS~~tedv-------lm~tssiMkD~~~g~~~~~kp~AiRs 125 (898)
T COG5240 55 GELFPEATATNLFFAILKLFQ--HKDLYLRQCVYSAIKELSKLTEDV-------LMGTSSIMKDLNGGVPDDVKPMAIRS 125 (898)
T ss_pred cccchhhHHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHhhcchhh-------hHHHHHHHHhhccCCccccccHHHHH
Confidence 455544556677777888888 899999988777776643321110 112333444444443 3778888888
Q ss_pred HHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhH
Q 039062 243 LVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALV 322 (871)
Q Consensus 243 l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (871)
|..++... .+..+=.++.+++-+....++..|+..-..+..... ...+....+.-
T Consensus 126 L~~Vid~~------tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~-------------------~~~~rw~ne~q 180 (898)
T COG5240 126 LFSVIDGE------TVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNF-------------------NQTKRWLNETQ 180 (898)
T ss_pred HHHhcCcc------hhhhHHHHhhhhccccchhhhhhHHHHhhhhccccH-------------------HHHHHHHHHHH
Confidence 87776431 111222233345556666666666554333322111 11111111111
Q ss_pred HHHHHHHhcccCCcc-cccccccHhHHHHHHHHHHHHHcC-CCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCCh
Q 039062 323 PLLLEILLKQEEDQD-QEEGAWNIAMAGGTCLGLVARTVG-DDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSP 400 (871)
Q Consensus 323 ~~l~~~l~~~~~d~~-~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~ 400 (871)
...+..-+ .+.... .+.....-...-.-+|+-+.+.-. +.+. .+..+.....+...+...|.+..+..+.+-.
T Consensus 181 eav~~l~q-~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma--~lklv~hf~~n~smknq~a~V~lvr~~~~ll-- 255 (898)
T COG5240 181 EAVLDLKQ-FPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMA--QLKLVEHFRGNASMKNQLAGVLLVRATVELL-- 255 (898)
T ss_pred HHHhhHhh-CcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHH--HHHHHHHhhcccccccchhheehHHHHHHHH--
Confidence 22222111 110000 000000001112344555544321 1111 1111222222234555666666666666544
Q ss_pred hhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCC-hHHHHHHHH
Q 039062 401 DKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDT-PNVAEKACG 479 (871)
Q Consensus 401 ~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-~~v~~~a~~ 479 (871)
+.-.+.+.++.|++-..+ .|....|.-.+.+++.+++...- .+++.++.+..|-..|... ...|-.|..
T Consensus 256 ~~n~q~~~q~rpfL~~wl-s~k~emV~lE~Ar~v~~~~~~nv---------~~~~~~~~vs~L~~fL~s~rv~~rFsA~R 325 (898)
T COG5240 256 KENSQALLQLRPFLNSWL-SDKFEMVFLEAARAVCALSEENV---------GSQFVDQTVSSLRTFLKSTRVVLRFSAMR 325 (898)
T ss_pred HhChHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHHHHHhcc---------CHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 223345677888888889 88888888888888777766542 3567777787777777653 234777888
Q ss_pred HHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 039062 480 ALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKT 559 (871)
Q Consensus 480 ~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~ 559 (871)
.|..++...... -..-.+-++.++ .+. -|.-+..||.++.++-.++...-+-..++.++..+.+.
T Consensus 326 iln~lam~~P~k--v~vcN~evEsLI-------sd~------Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~ 390 (898)
T COG5240 326 ILNQLAMKYPQK--VSVCNKEVESLI-------SDE------NRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDG 390 (898)
T ss_pred HHHHHHhhCCce--eeecChhHHHHh-------hcc------cccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccC
Confidence 888887543221 111122333333 221 24456777888888766544333333444444333221
Q ss_pred hhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHH-cccCcchhhhHHHHHHHHHHHh
Q 039062 560 LEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVF-ACRSATVHEEAMLAIGALAYAA 638 (871)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l-~~~~~~~~~~a~~~l~~l~~~~ 638 (871)
....++.++..++..++.. ...++ +.+...| +.+..+.+.++..+++.+.+..
T Consensus 391 ----------------FKiI~ida~rsLsl~Fp~k------~~s~l----~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~ 444 (898)
T COG5240 391 ----------------FKIIAIDALRSLSLLFPSK------KLSYL----DFLGSSLLQEGGLEFKKYMVDAISDAMEND 444 (898)
T ss_pred ----------------ceEEeHHHHHHHHhhCcHH------HHHHH----HHHHHHHHhcccchHHHHHHHHHHHHHhhC
Confidence 2233667777777776654 22333 3333332 3456677888888888888766
Q ss_pred hhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhc--ccccHHHHHHHHHHHccCCCCCCcCCchHHHHH
Q 039062 639 GLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEK--ILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCF 716 (871)
Q Consensus 639 ~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~--~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l 716 (871)
++.-.. .+..+.....+- +.-+.++..|+.+.+..+.. -..|+..+.+.++ |. +.-+|.+|+.|+
T Consensus 445 p~skEr----aLe~LC~fIEDc---ey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i--LE----N~ivRsaAv~aL 511 (898)
T COG5240 445 PDSKER----ALEVLCTFIEDC---EYHQITVRILGILGREGPRAKTPGKYVRHIYNRLI--LE----NNIVRSAAVQAL 511 (898)
T ss_pred chHHHH----HHHHHHHHHhhc---chhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH--Hh----hhHHHHHHHHHH
Confidence 543333 334444444333 33334677777776666532 2335555655543 22 456899999999
Q ss_pred HHHHHhhccChHHhHHHHHHHHHHHHhhc
Q 039062 717 GDIALAIGENFEKYLMYAMPMLQSAADLS 745 (871)
Q Consensus 717 ~~i~~~~~~~~~~~~~~i~~~l~~~l~~~ 745 (871)
..++.+....+.| ..+...+..++++.
T Consensus 512 skf~ln~~d~~~~--~sv~~~lkRclnD~ 538 (898)
T COG5240 512 SKFALNISDVVSP--QSVENALKRCLNDQ 538 (898)
T ss_pred HHhccCccccccH--HHHHHHHHHHhhcc
Confidence 9988887765443 23334455566554
No 75
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.89 E-value=1.5e-06 Score=92.92 Aligned_cols=380 Identities=16% Similarity=0.164 Sum_probs=221.2
Q ss_pred HHHHHhhcCCCh---HHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhc
Q 039062 134 VSLLSNVHQLPA---HVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQAN 210 (871)
Q Consensus 134 ~~L~~~l~~~~~---~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 210 (871)
|.++..+.+.+. ......+.++..++.. ++.+ ......++..+.....+ +.+...-..++.++..++......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~-~~~~~~ll~kl~~~~~~-~~~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTS--PQIL-ETLSIRLLNKLSIVCQS-ESSSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHH-HHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHhcccc
Confidence 556666666543 4567788888888775 2333 34445555555555543 347777788888888887654332
Q ss_pred c--cChh-hHH-HHHHHHHHhh----c-cC--cHHHHHHHHHHHHHHHHHhHH-hhHHhHHHHHHHHHHH-----hhCCC
Q 039062 211 F--SNDM-ERD-YIMRVVCEAT----Q-SA--ELKIRQAAFECLVSISSTYYE-KLAPYMQDIYSITAKA-----VREDE 273 (871)
Q Consensus 211 ~--~~~~-~~~-~i~~~l~~~l----~-~~--~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~ 273 (871)
. .... +.+ .+++.+++.. . +. ++.+-..+...+..++...+. .-...+..++..+... +....
T Consensus 78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~ 157 (415)
T PF12460_consen 78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSS 157 (415)
T ss_pred cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccc
Confidence 2 1111 112 1444444432 1 11 234444444444444443222 2222233344433300 00000
Q ss_pred h---hHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHH
Q 039062 274 E---PVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGG 350 (871)
Q Consensus 274 ~---~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~ 350 (871)
. +.....+..+..+... + ++....+ ....++..+++.....++ ...|.++.
T Consensus 158 ~~~~~~~~~~~~l~~~il~~---l----------~~~~~~~-----~~~~ll~~l~~~~~~~~~--------~~~~~~~~ 211 (415)
T PF12460_consen 158 STISEQQSRLVILFSAILCS---L----------RKDVSLP-----DLEELLQSLLNLALSSED--------EFSRLAAL 211 (415)
T ss_pred cccccccccHHHHHHHHHHc---C----------CcccCcc-----CHHHHHHHHHHHHHcCCC--------hHHHHHHH
Confidence 0 0111111111121110 0 0000000 122244444444433222 25788889
Q ss_pred HHHHHHHHHcC-CCcccchHHHHHhhh-cCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHH
Q 039062 351 TCLGLVARTVG-DDIVPLVIPFIEENI-AKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKD 428 (871)
Q Consensus 351 ~~l~~l~~~~~-~~~~~~l~~~l~~~l-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~ 428 (871)
+++..+++.++ +..+..++..+.... .+.....|..++..+..++.+.- -.-.+....++..++..+ .| +.+..
T Consensus 212 ~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv-~R~~~~~~~~~~~L~~lL-~~--~~~g~ 287 (415)
T PF12460_consen 212 QLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALV-MRGHPLATELLDKLLELL-SS--PELGQ 287 (415)
T ss_pred HHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHH-HcCCchHHHHHHHHHHHh-CC--hhhHH
Confidence 99999999874 334445555554444 33445566777777766666531 112234456777888888 66 67778
Q ss_pred HHHHHHHHHhhhhccCCC------CCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchH
Q 039062 429 TTAWTLGRIFEFLHGSTI------GTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFF 501 (871)
Q Consensus 429 ~a~~~l~~~~~~~~~~~~------~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~ 501 (871)
.+..+++-+....+.-.. ....+.++++..++|.+++...+ +...+.....+|..+.+++. ...+.+++
T Consensus 288 ~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP----~~vl~~~l 363 (415)
T PF12460_consen 288 QAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP----KSVLLPEL 363 (415)
T ss_pred HHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC----HHHHHHHH
Confidence 888888777766321111 12345678899999999998886 44477788888998888753 67899999
Q ss_pred HHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 039062 502 QEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMM 554 (871)
Q Consensus 502 ~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~ 554 (871)
+.+++.+++.+..++ ..++..++.++..++...++.+.++++.++|.+++
T Consensus 364 ~~LlPLLlqsL~~~~---~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 364 PTLLPLLLQSLSLPD---ADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 999999999997774 47899999999999999988888999999998875
No 76
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.85 E-value=0.00062 Score=78.58 Aligned_cols=145 Identities=14% Similarity=0.224 Sum_probs=108.9
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCC-CCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchh
Q 039062 92 QIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQ-KQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQD 170 (871)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~-~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~ 170 (871)
.....++..++++...+|..|-.|++.|+..+ |. -.-|++...+...+.+....+|++|++.+++.+-.. + +
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~D-p~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~-~-----e 888 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEAD-PSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI-P-----E 888 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcC-hHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc-H-----H
Confidence 34456777788777999999999999999987 42 355888888888888888999999999999877665 3 4
Q ss_pred hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Q 039062 171 HVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISST 249 (871)
Q Consensus 171 ~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 249 (871)
...+++..+...+. |++..||+.+++++..+..-.++ |. .+..+..-++...++++..+++-+++.+..+.=.
T Consensus 889 ~~~qyY~~i~erIl--DtgvsVRKRvIKIlrdic~e~pd-f~---~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 889 LIFQYYDQIIERIL--DTGVSVRKRVIKILRDICEETPD-FS---KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred HHHHHHHHHHhhcC--CCchhHHHHHHHHHHHHHHhCCC-hh---hHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 45566666677777 99999999999999997653332 21 2244455555566766666889999988887643
No 77
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.5e-07 Score=90.41 Aligned_cols=416 Identities=16% Similarity=0.127 Sum_probs=249.3
Q ss_pred HHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHH
Q 039062 386 AATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQ 465 (871)
Q Consensus 386 ~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 465 (871)
.+..++..+.+. .+...-.+....++..+ +++.+.++.++..++|+++-...+- .--.-+..+=+.+.+
T Consensus 66 saalafAeitek----~vr~Vsres~epvl~ll-qs~d~~Iq~aa~~alGnlAVn~enk------~liv~l~Gl~~Li~q 134 (550)
T KOG4224|consen 66 SAALAFAEITEK----GVRRVSRESNEPVLALL-QSCDKCIQCAAGEALGNLAVNMENK------GLIVSLLGLDLLILQ 134 (550)
T ss_pred HHHHHHHHHHHH----HHHHhhhhhhhHHHHHH-hCcchhhhhhhhhhhccceeccCCc------eEEEeccChHHHHHH
Confidence 334455555542 12222234566677788 9999999999999999988766421 011112233345677
Q ss_pred hccCChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHH
Q 039062 466 SMKDTPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMV 545 (871)
Q Consensus 466 ~l~d~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 545 (871)
.+.|+..||..+..|+.+++.- .+. +..+.. ..-+..+.+ +.+.. +..+|..+..++..+.......-.-..
T Consensus 135 mmtd~vevqcnaVgCitnLaT~-d~n--k~kiA~--sGaL~pltr-Laksk--dirvqrnatgaLlnmThs~EnRr~LV~ 206 (550)
T KOG4224|consen 135 MMTDGVEVQCNAVGCITNLATF-DSN--KVKIAR--SGALEPLTR-LAKSK--DIRVQRNATGALLNMTHSRENRRVLVH 206 (550)
T ss_pred hcCCCcEEEeeehhhhhhhhcc-ccc--hhhhhh--ccchhhhHh-hcccc--hhhHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 7778777777777777777542 110 111110 011222333 23322 567888898888888765543222223
Q ss_pred HHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhh
Q 039062 546 LQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHE 625 (871)
Q Consensus 546 ~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 625 (871)
..-+|.+...+... |. .++-.++.+++.|+-.-.. +-.+.+--+.+++.++.++.++++.++-
T Consensus 207 aG~lpvLVsll~s~---------d~----dvqyycttaisnIaVd~~~----Rk~Laqaep~lv~~Lv~Lmd~~s~kvkc 269 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSG---------DL----DVQYYCTTAISNIAVDRRA----RKILAQAEPKLVPALVDLMDDGSDKVKC 269 (550)
T ss_pred cCCchhhhhhhccC---------Ch----hHHHHHHHHhhhhhhhHHH----HHHHHhcccchHHHHHHHHhCCChHHHH
Confidence 45567777766442 11 3455577777776532110 0113333467899999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhhhhh-HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCC
Q 039062 626 EAMLAIGALAYAAGLDFAKYM-PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQL 704 (871)
Q Consensus 626 ~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 704 (871)
.|-.+++.++..... ..+.. ..-+|.+++.++++.. ......+.|+.+++-+-.....---..++..|+++++-.+
T Consensus 270 qA~lALrnlasdt~Y-q~eiv~ag~lP~lv~Llqs~~~-plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~d- 346 (550)
T KOG4224|consen 270 QAGLALRNLASDTEY-QREIVEAGSLPLLVELLQSPMG-PLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGD- 346 (550)
T ss_pred HHHHHHhhhcccchh-hhHHHhcCCchHHHHHHhCcch-hHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCC-
Confidence 999999988754432 22222 3467888888876654 3444556677666554332111001245666778777664
Q ss_pred CCcCCchHHHHHHHHHHhhccChHHhHH-HHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccc
Q 039062 705 HRSVKPPIFSCFGDIALAIGENFEKYLM-YAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKT 783 (871)
Q Consensus 705 ~~~v~~~~~~~l~~i~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~ 783 (871)
+.+++-.|.+++-+++.+...+...+.+ .-+|.+...+.+. ..++|+.+.-|+..+.-.
T Consensus 347 nEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~-------------pvsvqseisac~a~Lal~------- 406 (550)
T KOG4224|consen 347 NEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG-------------PVSVQSEISACIAQLALN------- 406 (550)
T ss_pred chhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-------------ChhHHHHHHHHHHHHHhc-------
Confidence 4568899999999999876654333332 3456666666543 145666666666555432
Q ss_pred cccccchH--HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcc------ccc-ccccchHHHHHHHHHHHcCCChhh
Q 039062 784 QLLIPYAP--HILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGS------NAG-SLIQQSLTSKDFLNECLSSKDHMI 854 (871)
Q Consensus 784 ~~~~~~~~--~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~------~~~-~~l~~~~~v~~~l~~~~~~~~~~~ 854 (871)
+.++.++- .|++.+.....+ .+.++|-.+...+++++..... .|. |. .. +.-.|.....+++..+
T Consensus 407 d~~k~~lld~gi~~iLIp~t~s--~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~-~g---i~g~L~Rfl~S~~~tf 480 (550)
T KOG4224|consen 407 DNDKEALLDSGIIPILIPWTGS--ESEEVRGNAAAALINLSSDVEHYARVIEAWDHPV-QG---IQGRLARFLASHELTF 480 (550)
T ss_pred cccHHHHhhcCCcceeecccCc--cchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcc-hh---HHHHHHHHHhhhHHHH
Confidence 12222221 467777777654 5888998888888887765432 122 32 22 5666777777889999
Q ss_pred HHHHHHHHHHHH
Q 039062 855 KESAEWARLAIN 866 (871)
Q Consensus 855 ~~~~~~~~~~~~ 866 (871)
|..|.|++.++-
T Consensus 481 ~hia~wTI~qLl 492 (550)
T KOG4224|consen 481 RHIARWTIQQLL 492 (550)
T ss_pred HHHHHHHHHHHH
Confidence 999999998874
No 78
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=3.4e-07 Score=88.07 Aligned_cols=420 Identities=14% Similarity=0.079 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhh
Q 039062 234 KIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYF 313 (871)
Q Consensus 234 ~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (871)
+.+..+.-.+..+.+..-. ..-.+..+.+...+++.++.+...+.+.++.++-.. +.. ..
T Consensus 62 nlqrsaalafAeitek~vr---~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~------------enk-----~l 121 (550)
T KOG4224|consen 62 NLQRSAALAFAEITEKGVR---RVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNM------------ENK-----GL 121 (550)
T ss_pred ccchHHHHHHHHHHHHHHH---HhhhhhhhHHHHHHhCcchhhhhhhhhhhccceecc------------CCc-----eE
Confidence 3444555555555543222 222345556666778888888888877777664421 110 11
Q ss_pred HHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCC----cccchHHHHHhhhcCCChhhHHHHHH
Q 039062 314 IKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDD----IVPLVIPFIEENIAKPDWRQREAATY 389 (871)
Q Consensus 314 ~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~ 389 (871)
+-. +..+-+.+.+.|+.. -.++.-+..|+-.++..-..+ -...+.|.+. .-++.+-++|.-+.-
T Consensus 122 iv~-l~Gl~~Li~qmmtd~----------vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltr-Lakskdirvqrnatg 189 (550)
T KOG4224|consen 122 IVS-LLGLDLLILQMMTDG----------VEVQCNAVGCITNLATFDSNKVKIARSGALEPLTR-LAKSKDIRVQRNATG 189 (550)
T ss_pred EEe-ccChHHHHHHhcCCC----------cEEEeeehhhhhhhhccccchhhhhhccchhhhHh-hcccchhhHHHHHHH
Confidence 111 112223333333211 123444556666665542111 1123334333 334555566776666
Q ss_pred HHHHhhcCCChhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhcc
Q 039062 390 AFGSILEGPSPDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMK 468 (871)
Q Consensus 390 ~l~~l~~~~~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 468 (871)
++..+.... +.-...+ ..-+|.++..+ ...++.||+.++.+++.++-.-... ..-.+.-+.++|.|++.+.
T Consensus 190 aLlnmThs~--EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd~~~R-----k~Laqaep~lv~~Lv~Lmd 261 (550)
T KOG4224|consen 190 ALLNMTHSR--ENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVDRRAR-----KILAQAEPKLVPALVDLMD 261 (550)
T ss_pred HHHHhhhhh--hhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhhHHHH-----HHHHhcccchHHHHHHHHh
Confidence 666665532 2222222 35689999999 9999999999999999988653210 1112233568999999998
Q ss_pred C-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHH-HHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHH
Q 039062 469 D-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQ-EIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVL 546 (871)
Q Consensus 469 d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~-~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 546 (871)
+ +++|+-.|..+|.++... .+...+.++ .-++.++++++++- -..-.+...||..+.-+......-.=.
T Consensus 262 ~~s~kvkcqA~lALrnlasd------t~Yq~eiv~ag~lP~lv~Llqs~~---~plilasVaCIrnisihplNe~lI~da 332 (550)
T KOG4224|consen 262 DGSDKVKCQAGLALRNLASD------TEYQREIVEAGSLPLLVELLQSPM---GPLILASVACIRNISIHPLNEVLIADA 332 (550)
T ss_pred CCChHHHHHHHHHHhhhccc------chhhhHHHhcCCchHHHHHHhCcc---hhHHHHHHHHHhhcccccCcccceecc
Confidence 7 789999999999998642 222222221 22445666666543 133345666666666555433222224
Q ss_pred HHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhh-HHHHHHHHHHHHcccCcchhh
Q 039062 547 QLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQY-ADQIMGLFLRVFACRSATVHE 625 (871)
Q Consensus 547 ~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~~ 625 (871)
.++.++...+.-. |.+ +++.++.+++-.++...... ...+ -..-++.+..++-+..-.+++
T Consensus 333 gfl~pLVrlL~~~---------dnE---eiqchAvstLrnLAasse~n------~~~i~esgAi~kl~eL~lD~pvsvqs 394 (550)
T KOG4224|consen 333 GFLRPLVRLLRAG---------DNE---EIQCHAVSTLRNLAASSEHN------VSVIRESGAIPKLIELLLDGPVSVQS 394 (550)
T ss_pred cchhHHHHHHhcC---------Cch---hhhhhHHHHHHHHhhhhhhh------hHHHhhcCchHHHHHHHhcCChhHHH
Confidence 4666677666532 121 46777888888888755443 2222 235678888888887777888
Q ss_pred hHHHHHHHHHHHhhhhhhhhh--HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhh------cccccHHHHHHHHHH
Q 039062 626 EAMLAIGALAYAAGLDFAKYM--PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEE------KILPYCDGIMTQLLK 697 (871)
Q Consensus 626 ~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~------~~~~~~~~i~~~l~~ 697 (871)
..-.+++.++.. +.+..++ ..++|.++....+.. .+++.+|...+++++..... ....-...+-..|.+
T Consensus 395 eisac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s-~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~R 471 (550)
T KOG4224|consen 395 EISACIAQLALN--DNDKEALLDSGIIPILIPWTGSES-EEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLAR 471 (550)
T ss_pred HHHHHHHHHHhc--cccHHHHhhcCCcceeecccCccc-hhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHH
Confidence 777777766532 3333333 347787777776554 48999999999988775431 111112445555666
Q ss_pred HccCCCCCCcCCchHHHHHHHHHHhhcc
Q 039062 698 DLSSNQLHRSVKPPIFSCFGDIALAIGE 725 (871)
Q Consensus 698 ~l~~~~~~~~v~~~~~~~l~~i~~~~~~ 725 (871)
.+.+. ...++.-+.+++.++......
T Consensus 472 fl~S~--~~tf~hia~wTI~qLle~h~~ 497 (550)
T KOG4224|consen 472 FLASH--ELTFRHIARWTIQQLLEDHDL 497 (550)
T ss_pred HHhhh--HHHHHHHHHHHHHHHHHhCCc
Confidence 65554 344556666666666655443
No 79
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.77 E-value=7.9e-06 Score=87.46 Aligned_cols=383 Identities=15% Similarity=0.180 Sum_probs=233.3
Q ss_pred HHHHHHccCCCcH---HHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC------ChHHHHHHHHHHH
Q 039062 412 SFMLSALTKDPNN---HVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD------TPNVAEKACGALY 482 (871)
Q Consensus 412 ~~l~~~l~~d~~~---~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d------~~~v~~~a~~~l~ 482 (871)
|.++..+ .|..+ .-...++.+++.++... ..+..+++.++..+.. +.......+.++.
T Consensus 2 p~ll~~L-pd~~~~~~~~~~~~L~~l~~ls~~~------------~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~ 68 (415)
T PF12460_consen 2 PALLALL-PDSDSSTDSNYERILEALAALSTSP------------QILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQ 68 (415)
T ss_pred chHHhhC-CCCCCcchhHHHHHHHHHHHHHCCh------------hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 5566667 55544 33555666666665433 3456666666666552 3344556667777
Q ss_pred HHHhhcccCCCCCCCcchHHH-HHHHHHHhhccCCh----hhhhHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHH
Q 039062 483 FLAQGYEDVGPSSPLTPFFQE-IVQSLLTVTHREDA----GESRLRTAAYETLNEVVRSSTDE-TAPMVLQLVPVIMMEL 556 (871)
Q Consensus 483 ~l~~~~~~~~~~~~l~~~~~~-il~~l~~~l~~~~~----~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll~~l~~~l 556 (871)
.+.+............-|.+. +++.+.+..-.... .+..+-..+...++.++...+.. -...+..+...+..
T Consensus 69 ~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~-- 146 (415)
T PF12460_consen 69 SLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLS-- 146 (415)
T ss_pred HHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcc--
Confidence 776654332101233344443 66666665432210 02344455556666666666632 22333444443330
Q ss_pred HHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHccc-CcchhhhHHHHHHHHH
Q 039062 557 HKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACR-SATVHEEAMLAIGALA 635 (871)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~a~~~l~~l~ 635 (871)
..... +....... ...........+..+...+.++. ..+....++..++...... +...|..++.+++.++
T Consensus 147 ~~~~~-~~~~~~~~--~~~~~~~~~~l~~~il~~l~~~~-----~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~Lv 218 (415)
T PF12460_consen 147 PKSFS-PFQPSSST--ISEQQSRLVILFSAILCSLRKDV-----SLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLV 218 (415)
T ss_pred ccccC-CCCccccc--cccccccHHHHHHHHHHcCCccc-----CccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 00000 00000000 00012235555667777777662 2245666788887766554 5668889999999999
Q ss_pred HHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHH
Q 039062 636 YAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSC 715 (871)
Q Consensus 636 ~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~ 715 (871)
...+.+ +.+..++..+.....+......+..++..+..+.++.--.-.|....+++.+++.++++ ++...++.+
T Consensus 219 NK~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~----~~g~~aA~~ 292 (415)
T PF12460_consen 219 NKWPDD--DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSSP----ELGQQAAKA 292 (415)
T ss_pred cCCCCh--hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCCh----hhHHHHHHH
Confidence 875322 13444444444444223344677788888888888766455577788889999988864 466788888
Q ss_pred HHHHHHhhcc--------C-----hHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCcc
Q 039062 716 FGDIALAIGE--------N-----FEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPK 782 (871)
Q Consensus 716 l~~i~~~~~~--------~-----~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~ 782 (871)
++.+..-.+. . -..++..++|.+.+.+... + ...|...+.++..+++.+.
T Consensus 293 f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~------~-------~~~k~~yL~ALs~ll~~vP---- 355 (415)
T PF12460_consen 293 FGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA------D-------DEIKSNYLTALSHLLKNVP---- 355 (415)
T ss_pred HhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc------C-------hhhHHHHHHHHHHHHhhCC----
Confidence 8887765221 1 1257778888888887765 2 2367788999999999864
Q ss_pred ccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHH
Q 039062 783 TQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLN 844 (871)
Q Consensus 783 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~ 844 (871)
.+.+.++++.++|.+++.+.- .+.+++.+++.++..+...-++-+.+++.. +|..+++
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~--~~~~v~~s~L~tL~~~l~~~~~~i~~hl~s--LI~~LL~ 413 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSL--PDADVLLSSLETLKMILEEAPELISEHLSS--LIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHcCHHHHHHHHHH--HHHHHHh
Confidence 456779999999999999865 467799999999999999988778888887 4666554
No 80
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=3.1e-05 Score=82.25 Aligned_cols=419 Identities=12% Similarity=0.155 Sum_probs=237.3
Q ss_pred HHHHHHHHH-cCCCcccchH-HHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHH
Q 039062 351 TCLGLVART-VGDDIVPLVI-PFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKD 428 (871)
Q Consensus 351 ~~l~~l~~~-~~~~~~~~l~-~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~ 428 (871)
++++.+... ..++-+|.++ ..+...+-+.+-..+..-++-+..+-...+...+.+.+--+.+.+-+-| ++||+.||.
T Consensus 39 eamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDL-QHPNEyiRG 117 (948)
T KOG1058|consen 39 EAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDL-QHPNEYIRG 117 (948)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhc-cCchHhhcc
Confidence 445544433 3344445444 4445556666656666544444443332211233344555667888899 999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHH
Q 039062 429 TTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQS 507 (871)
Q Consensus 429 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~ 507 (871)
..++.+.++ ..++.+++++|.+..++.- ++.||..|..|+..+..+ .+.+.|-.++++..
T Consensus 118 ~TLRFLckL-------------kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~------~~~L~pDapeLi~~ 178 (948)
T KOG1058|consen 118 STLRFLCKL-------------KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN------FEHLIPDAPELIES 178 (948)
T ss_pred hhhhhhhhc-------------CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh------hhhhcCChHHHHHH
Confidence 998776543 3467889999999999985 899999999999988764 46677888888876
Q ss_pred HHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHH
Q 039062 508 LLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVI 587 (871)
Q Consensus 508 l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 587 (871)
.+..=. ++..+..|+-.|-.. -++.-..|+..-+..+-. | + ..++..+.+.+...
T Consensus 179 fL~~e~-----DpsCkRNAFi~L~~~---D~ErAl~Yl~~~idqi~~-~-----------~-----~~LqlViVE~Irkv 233 (948)
T KOG1058|consen 179 FLLTEQ-----DPSCKRNAFLMLFTT---DPERALNYLLSNIDQIPS-F-----------N-----DSLQLVIVELIRKV 233 (948)
T ss_pred HHHhcc-----CchhHHHHHHHHHhc---CHHHHHHHHHhhHhhccC-c-----------c-----HHHHHHHHHHHHHH
Confidence 665433 334555555444332 121112222211111100 0 0 01222233333333
Q ss_pred HHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHH
Q 039062 588 IQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCA 667 (871)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~ 667 (871)
+..-+ ..-...+..++.+|.+.++.++-+|...+..+.. .+..+.+-....+..+.+-- +-.++-
T Consensus 234 ~~~~p----------~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk~Aa~~~i~l~~kes----dnnvkl 298 (948)
T KOG1058|consen 234 CLANP----------AEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALKAAASTYIDLLVKES----DNNVKL 298 (948)
T ss_pred HhcCH----------HHhhHHHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHHHHHHHHHHHHHhcc----Ccchhh
Confidence 32111 1123445667777777766665554444433321 12233333444455444332 223433
Q ss_pred HHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhccc
Q 039062 668 VTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAH 747 (871)
Q Consensus 668 ~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 747 (871)
..+.-|..+... -...+.+++-.+++.++.+ +-++|.-++...-.++.+- -+++++..+.+-+..+.+
T Consensus 299 Ivldrl~~l~~~----~~~il~~l~mDvLrvLss~--dldvr~Ktldi~ldLvssr------Nvediv~~Lkke~~kT~~ 366 (948)
T KOG1058|consen 299 IVLDRLSELKAL----HEKILQGLIMDVLRVLSSP--DLDVRSKTLDIALDLVSSR------NVEDIVQFLKKEVMKTHN 366 (948)
T ss_pred hhHHHHHHHhhh----hHHHHHHHHHHHHHHcCcc--cccHHHHHHHHHHhhhhhc------cHHHHHHHHHHHHHhccc
Confidence 334444444311 1122345556667888888 6789988888766665543 467788888877766532
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcc
Q 039062 748 TANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGS 827 (871)
Q Consensus 748 ~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~ 827 (871)
.+.++ ...-|+-.++++....-. |..+...+++.++..+.| .++......+.++......++
T Consensus 367 ~e~d~------~~~yRqlLiktih~cav~---------Fp~~aatvV~~ll~fisD--~N~~aas~vl~FvrE~iek~p- 428 (948)
T KOG1058|consen 367 EESDD------NGKYRQLLIKTIHACAVK---------FPEVAATVVSLLLDFISD--SNEAAASDVLMFVREAIEKFP- 428 (948)
T ss_pred ccccc------chHHHHHHHHHHHHHhhc---------ChHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhCc-
Confidence 21111 244577777777666543 555677899999999887 355566667778888777764
Q ss_pred cccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 039062 828 NAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLA 864 (871)
Q Consensus 828 ~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~ 864 (871)
-|... .+..++....+=+...+-..|.|+.|.
T Consensus 429 ----~Lr~~-ii~~l~~~~~~irS~ki~rgalwi~Ge 460 (948)
T KOG1058|consen 429 ----NLRAS-IIEKLLETFPQIRSSKICRGALWILGE 460 (948)
T ss_pred ----hHHHH-HHHHHHHhhhhhcccccchhHHHHHHH
Confidence 33332 355555555544556677778888775
No 81
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.76 E-value=7.5e-08 Score=77.22 Aligned_cols=92 Identities=17% Similarity=0.152 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHH
Q 039062 383 QREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITV 462 (871)
Q Consensus 383 ~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~ 462 (871)
.|++++.++.+++.+.+ ....++++.+++.++.++ .|++++||+.|+.++.+++....+ ....++..+++.
T Consensus 2 ~R~ggli~Laa~ai~l~-~~~~~~l~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~-------~~l~~f~~IF~~ 72 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALG-KDISKYLDEILPPVLKCF-DDQDSRVRYYACEALYNISKVARG-------EILPYFNEIFDA 72 (97)
T ss_pred chhHHHHHHHHHHHHch-HhHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 69999999999999985 678999999999999999 999999999999999999998863 235589999999
Q ss_pred HHHhccC-ChHHHHHHHHHHHHH
Q 039062 463 LLQSMKD-TPNVAEKACGALYFL 484 (871)
Q Consensus 463 l~~~l~d-~~~v~~~a~~~l~~l 484 (871)
|.+.+.| +++|+.+|.. |.++
T Consensus 73 L~kl~~D~d~~Vr~~a~~-Ld~l 94 (97)
T PF12755_consen 73 LCKLSADPDENVRSAAEL-LDRL 94 (97)
T ss_pred HHHHHcCCchhHHHHHHH-HHHH
Confidence 9999998 7899887744 4444
No 82
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.72 E-value=2.6e-07 Score=90.70 Aligned_cols=189 Identities=16% Similarity=0.235 Sum_probs=133.5
Q ss_pred cccCcchhhhHHHHHHHHHHHh-----hhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHH
Q 039062 617 ACRSATVHEEAMLAIGALAYAA-----GLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGI 691 (871)
Q Consensus 617 ~~~~~~~~~~a~~~l~~l~~~~-----~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i 691 (871)
.+.++..|..++.-+..++... .+.+.+.+..+++.+...+.+... .+...|+.+++.++..++..+.+|++.+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs-~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRS-KVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 4468889999999999998876 234445556666777777765433 6888999999999999999999999999
Q ss_pred HHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHH-HHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHH
Q 039062 692 MTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYA-MPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAY 770 (871)
Q Consensus 692 ~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i-~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~ 770 (871)
++.|++.+.+. ...++..+..++..++..++ +.+.+ .+.+......+ ...+|..+++.+
T Consensus 96 l~~Ll~~~~~~--~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~K-------------n~~vR~~~~~~l 155 (228)
T PF12348_consen 96 LPPLLKKLGDS--KKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSK-------------NPQVREECAEWL 155 (228)
T ss_dssp HHHHHHGGG-----HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S--------------HHHHHHHHHHH
T ss_pred HHHHHHHHccc--cHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCC-------------CHHHHHHHHHHH
Confidence 99999999987 67789999999999998776 23355 55666666554 478999999999
Q ss_pred HHHhhhccCCcccccccc--chHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhccccc
Q 039062 771 SGIFQGFKNSPKTQLLIP--YAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAG 830 (871)
Q Consensus 771 ~~l~~~~~~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~ 830 (871)
..++...+.. ...+.. .++.+.+.+...+.| .+.++|..|-.++..+.+.+|....
T Consensus 156 ~~~l~~~~~~--~~~l~~~~~~~~l~~~l~~~l~D--~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 156 AIILEKWGSD--SSVLQKSAFLKQLVKALVKLLSD--ADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp HHHHTT-------GGG--HHHHHHHHHHHHHHHTS--S-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred HHHHHHccch--HhhhcccchHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 9999887622 122332 357899999999997 5799999999999999999987543
No 83
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.70 E-value=4.7e-07 Score=88.85 Aligned_cols=183 Identities=18% Similarity=0.242 Sum_probs=126.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHh-h----hcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHH
Q 039062 658 QNFEEYQVCAVTVGVVGDICRAL-E----EKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLM 732 (871)
Q Consensus 658 ~~~~~~~v~~~a~~~l~~l~~~~-~----~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~ 732 (871)
..+.+|+.|..|+..+..++... . +.+.+.+..++..+...+.+. ...+-..++.+++.++..+|..|.+|++
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~--Rs~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL--RSKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-----HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 34568999999999999998876 1 223333445556777777766 5667889999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHH-HHHHHHHhcCCCCCHHHH
Q 039062 733 YAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHI-LQFLDSMYMEKDMDELVM 811 (871)
Q Consensus 733 ~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i-~~~l~~~~~~~~~~~~~r 811 (871)
.++|.+++.+... ...+|+.+..++..++...+ +.+.+ ...+....++ .+..+|
T Consensus 94 ~~l~~Ll~~~~~~-------------~~~i~~~a~~~L~~i~~~~~----------~~~~~~~~~l~~~~~~--Kn~~vR 148 (228)
T PF12348_consen 94 ILLPPLLKKLGDS-------------KKFIREAANNALDAIIESCS----------YSPKILLEILSQGLKS--KNPQVR 148 (228)
T ss_dssp HHHHHHHHGGG----------------HHHHHHHHHHHHHHHTTS-----------H--HHHHHHHHHHTT---S-HHHH
T ss_pred HHHHHHHHHHccc-------------cHHHHHHHHHHHHHHHHHCC----------cHHHHHHHHHHHHHhC--CCHHHH
Confidence 9999999988764 35688899999999988753 12245 5555555554 679999
Q ss_pred HHHHHHHHHHHhHhc---cccccc--ccchHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHhc
Q 039062 812 KTAIGLLGDLADTLG---SNAGSL--IQQSLTSKDFLNECLSSKDHMIKESAEWARLAINKAIS 870 (871)
Q Consensus 812 ~~a~~~l~~i~~~~~---~~~~~~--l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (871)
..++.++..+...+| ..+.+. ++. +.+.+....++.++++|++|..++..+....+
T Consensus 149 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~---l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 149 EECAEWLAIILEKWGSDSSVLQKSAFLKQ---LVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHHHHTT-----GGG--HHHHHH---HHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHccchHhhhcccchHHH---HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 999999999999998 333322 233 56677777778999999999999998877654
No 84
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.68 E-value=0.00074 Score=69.79 Aligned_cols=418 Identities=13% Similarity=0.076 Sum_probs=219.2
Q ss_pred HHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCC---------
Q 039062 351 TCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKD--------- 421 (871)
Q Consensus 351 ~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d--------- 421 (871)
.++..+....+....+.+-.++.+.+-++....|-+|+..-..+.... ......+.++.-..++..- +-
T Consensus 121 ~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~-~~~~~rw~ne~qeav~~l~-q~p~~~~n~gy 198 (898)
T COG5240 121 MAIRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNN-FNQTKRWLNETQEAVLDLK-QFPNQHGNEGY 198 (898)
T ss_pred HHHHHHHHhcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhcccc-HHHHHHHHHHHHHHHhhHh-hCcCccCCccc
Confidence 456677777777788888888888888888888888776666665543 3555555544444443322 21
Q ss_pred ---CcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCChHHH--HHH---HHHHHHHHhhcccCCC
Q 039062 422 ---PNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVA--EKA---CGALYFLAQGYEDVGP 493 (871)
Q Consensus 422 ---~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~--~~a---~~~l~~l~~~~~~~~~ 493 (871)
.++.-++-|+-.|.++-..- ...+..+++.+..+..+. .+. ..+...+.. +
T Consensus 199 ~Pn~~~isqYHalGlLyq~kr~d---------------kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~---~--- 257 (898)
T COG5240 199 EPNGNPISQYHALGLLYQSKRTD---------------KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLK---E--- 257 (898)
T ss_pred CCCCChHHHHHHHHHHHHHhccc---------------HHHHHHHHHHhhcccccccchhheehHHHHHHHHH---h---
Confidence 23445555544443332211 122233333333221110 000 111111211 1
Q ss_pred CCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHH
Q 039062 494 SSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQ 573 (871)
Q Consensus 494 ~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~ 573 (871)
-..++.++.+.|-..+++. -..+...+..+++.+...- --.+++++.+..+...+..+ +
T Consensus 258 ---n~q~~~q~rpfL~~wls~k---~emV~lE~Ar~v~~~~~~n--v~~~~~~~~vs~L~~fL~s~----------r--- 316 (898)
T COG5240 258 ---NSQALLQLRPFLNSWLSDK---FEMVFLEAARAVCALSEEN--VGSQFVDQTVSSLRTFLKST----------R--- 316 (898)
T ss_pred ---ChHHHHHHHHHHHHHhcCc---chhhhHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcc----------h---
Confidence 1122333333333333332 1245556667777666543 12234445555444444332 1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHH
Q 039062 574 GELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYL 653 (871)
Q Consensus 574 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l 653 (871)
...|-.+++.++.++...+.. . ..+.. .+-.+.++.+ |.-+.-|+..+.+.-.+.-..-+-..+|.+
T Consensus 317 v~~rFsA~Riln~lam~~P~k------v-~vcN~---evEsLIsd~N---r~IstyAITtLLKTGt~e~idrLv~~I~sf 383 (898)
T COG5240 317 VVLRFSAMRILNQLAMKYPQK------V-SVCNK---EVESLISDEN---RTISTYAITTLLKTGTEETIDRLVNLIPSF 383 (898)
T ss_pred HHHHHHHHHHHHHHHhhCCce------e-eecCh---hHHHHhhccc---ccchHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence 124556888888888776643 1 11111 1122233322 444555677776554332222222333333
Q ss_pred HhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHH
Q 039062 654 EMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMY 733 (871)
Q Consensus 654 ~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~ 733 (871)
++.+++ ..+..++.++..++-.++..-..|++-+...|++ .. .-+.|.+++.++.++....++.- +.
T Consensus 384 vhD~SD----~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~----eG-g~eFK~~~Vdaisd~~~~~p~sk----Er 450 (898)
T COG5240 384 VHDMSD----GFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ----EG-GLEFKKYMVDAISDAMENDPDSK----ER 450 (898)
T ss_pred HHhhcc----CceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh----cc-cchHHHHHHHHHHHHHhhCchHH----HH
Confidence 333332 2344566667767666665444444444444333 22 56788889999998888766432 23
Q ss_pred HHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHH
Q 039062 734 AMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKT 813 (871)
Q Consensus 734 i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~ 813 (871)
.+..+-..+.+ .+|. +.+++.++-|-....+ .+.-..|+..|++.+. +. +.-+|.+
T Consensus 451 aLe~LC~fIED-----------cey~----~I~vrIL~iLG~EgP~---a~~P~~yvrhIyNR~i--LE----N~ivRsa 506 (898)
T COG5240 451 ALEVLCTFIED-----------CEYH----QITVRILGILGREGPR---AKTPGKYVRHIYNRLI--LE----NNIVRSA 506 (898)
T ss_pred HHHHHHHHHhh-----------cchh----HHHHHHHHHhcccCCC---CCCcchHHHHHHHHHH--Hh----hhHHHHH
Confidence 33334333332 2231 1233333333322222 2233346666766543 22 2448999
Q ss_pred HHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHHHH
Q 039062 814 AIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINK 867 (871)
Q Consensus 814 a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 867 (871)
|+.++...+....+ +..+++ |..+|+.+..+.|..+|+.|+++++.|++
T Consensus 507 Av~aLskf~ln~~d---~~~~~s--v~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 507 AVQALSKFALNISD---VVSPQS--VENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred HHHHHHHhccCccc---cccHHH--HHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 99999888776654 666775 99999999999999999999999999874
No 85
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=0.00019 Score=76.53 Aligned_cols=432 Identities=12% Similarity=0.126 Sum_probs=231.4
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCH--
Q 039062 10 LNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDA-- 87 (871)
Q Consensus 10 ~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~-- 87 (871)
+.+-+++.+.+-.|-+.+-..-.+. +.+...++.|+.- ..+.+.. .||+++-..|+-. ++.+.
T Consensus 27 ~~Lek~~~~~KIeamK~ii~~mlnG-e~~p~Llm~IiRf-vlps~~~-----elKKLly~ywE~v--------PKt~~dg 91 (948)
T KOG1058|consen 27 EKLEKGDDEVKIEAMKKIIALMLNG-EDLPSLLMTIIRF-VLPSRNH-----ELKKLLYYYWELV--------PKTDSDG 91 (948)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHcC-CCchHHHHHHhhe-eeccCch-----HHHHHHHHHHHHc--------cccCCCc
Confidence 3445566677777766664332221 4444455555432 1122211 3445444444311 11111
Q ss_pred ---HHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCC
Q 039062 88 ---NVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSP 164 (871)
Q Consensus 88 ---~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~ 164 (871)
+..--+.+..-+-|++|+..||...-+.+.++-. | +-...++|.+.+++......+|..|..++..|.... .
T Consensus 92 kl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE---~-ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~-~ 166 (948)
T KOG1058|consen 92 KLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKE---P-ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF-E 166 (948)
T ss_pred ccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCc---H-HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh-h
Confidence 1222355555566889999999766555554422 2 345668899999999999999999999998887764 2
Q ss_pred CccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 039062 165 DVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLV 244 (871)
Q Consensus 165 ~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~ 244 (871)
..+ +..+.++..++. . +.++..+..|+-.|...- + +--.+++. ..+..+.+-++.++...++.+.
T Consensus 167 ~L~--pDapeLi~~fL~---~-e~DpsCkRNAFi~L~~~D---~-----ErAl~Yl~-~~idqi~~~~~~LqlViVE~Ir 231 (948)
T KOG1058|consen 167 HLI--PDAPELIESFLL---T-EQDPSCKRNAFLMLFTTD---P-----ERALNYLL-SNIDQIPSFNDSLQLVIVELIR 231 (948)
T ss_pred hhc--CChHHHHHHHHH---h-ccCchhHHHHHHHHHhcC---H-----HHHHHHHH-hhHhhccCccHHHHHHHHHHHH
Confidence 222 333444433332 2 677778877776665521 1 00012222 2222233335666777777777
Q ss_pred HHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHH
Q 039062 245 SISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPL 324 (871)
Q Consensus 245 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (871)
..+...|..-..++. .+...+.+.++.++..|...+..+... +..++.....++..
T Consensus 232 kv~~~~p~~~~~~i~----~i~~lL~stssaV~fEaa~tlv~lS~~--------------------p~alk~Aa~~~i~l 287 (948)
T KOG1058|consen 232 KVCLANPAEKARYIR----CIYNLLSSTSSAVIFEAAGTLVTLSND--------------------PTALKAAASTYIDL 287 (948)
T ss_pred HHHhcCHHHhhHHHH----HHHHHHhcCCchhhhhhcceEEEccCC--------------------HHHHHHHHHHHHHH
Confidence 777665655455444 444466666777776665554444332 22344433333333
Q ss_pred HHHHHhcccCCcccccccccHhHHHHHHHHHHHHHc--CCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhh
Q 039062 325 LLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTV--GDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDK 402 (871)
Q Consensus 325 l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~ 402 (871)
+. +..+ .+++- -.++++...- ...++..+.--+...+++++..+|.-++...-.++++...+.
T Consensus 288 ~~----kesd--------nnvkl---Ivldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNved 352 (948)
T KOG1058|consen 288 LV----KESD--------NNVKL---IVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVED 352 (948)
T ss_pred HH----hccC--------cchhh---hhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHH
Confidence 32 2211 23332 2334444332 233444444445567788999999998877777776543333
Q ss_pred hhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHH
Q 039062 403 LLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGAL 481 (871)
Q Consensus 403 ~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l 481 (871)
+..++..=+...-..- .|.+...|..-..++...+..++ .+...+++.+++.+.| ++.........+
T Consensus 353 iv~~Lkke~~kT~~~e-~d~~~~yRqlLiktih~cav~Fp-----------~~aatvV~~ll~fisD~N~~aas~vl~Fv 420 (948)
T KOG1058|consen 353 IVQFLKKEVMKTHNEE-SDDNGKYRQLLIKTIHACAVKFP-----------EVAATVVSLLLDFISDSNEAAASDVLMFV 420 (948)
T ss_pred HHHHHHHHHHhccccc-cccchHHHHHHHHHHHHHhhcCh-----------HHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3333321111111111 45566678877777777766553 5678999999999998 555333333333
Q ss_pred HHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcC
Q 039062 482 YFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSST 538 (871)
Q Consensus 482 ~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~ 538 (871)
...++.+ ...-..|+..++..+..-. ..++...+++.+|..+....
T Consensus 421 rE~iek~---------p~Lr~~ii~~l~~~~~~ir--S~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 421 REAIEKF---------PNLRASIIEKLLETFPQIR--SSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHhC---------chHHHHHHHHHHHhhhhhc--ccccchhHHHHHHHHHhhhH
Confidence 3333322 2223345555555443322 23445577777777766543
No 86
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.0025 Score=67.80 Aligned_cols=240 Identities=12% Similarity=0.119 Sum_probs=153.8
Q ss_pred hhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhh--hhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHh
Q 039062 603 QYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAG--LDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRAL 680 (871)
Q Consensus 603 ~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 680 (871)
..+...++.+..++.+.+..+|--+++.++.++..-. +.+..+ ...++..++.+.|..+|+.|+.+|-.++..-
T Consensus 325 ~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h----~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 325 ELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH----QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH----HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 4566778888899998888899888888888876522 123334 4444556664556689999999988776543
Q ss_pred hhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhccc--------CCCCC
Q 039062 681 EEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAH--------TANVD 752 (871)
Q Consensus 681 ~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~--------~~~~d 752 (871)
. ..+|+..+++.+.+. +..+|+....-++.++..+-.++.-|++-+++.+.-+-....+ .-.+.
T Consensus 401 N------ak~IV~elLqYL~tA--d~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNn 472 (938)
T KOG1077|consen 401 N------AKQIVAELLQYLETA--DYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNN 472 (938)
T ss_pred h------HHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecc
Confidence 2 467888888888876 6789999999999999999999999999999888754322210 00112
Q ss_pred hhHHHH----------HHHHHHHHHHHHHHHhhhccCCc-cccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 039062 753 DDMTEY----------TNSLRNGILEAYSGIFQGFKNSP-KTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDL 821 (871)
Q Consensus 753 ~~~~~~----------~~~~r~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i 821 (871)
||...| .....+.++++-+-++..++.-. ..+...| ...+..+..-+. --+...|...+.++-.+
T Consensus 473 edlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~--~~qFsllh~K~~--~~s~~tr~lLLtTyiKl 548 (938)
T KOG1077|consen 473 EDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSP--AVQFSLLHEKLH--LCSPVTRALLLTTYIKL 548 (938)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCCh--HHHHHHHHHHhc--cCChhHHHHHHHHHHHH
Confidence 222222 12333455555455555544320 0001111 122233333333 24566788888888888
Q ss_pred HhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHH
Q 039062 822 ADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAI 865 (871)
Q Consensus 822 ~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 865 (871)
+..+ |.+... |..++..-.+.-|.++++-|.+=+.-+
T Consensus 549 ~nl~-----PEi~~~--v~~vFq~~~n~~D~ElQqRa~EYLql~ 585 (938)
T KOG1077|consen 549 INLF-----PEIKSN--VQKVFQLYSNLIDVELQQRAVEYLQLS 585 (938)
T ss_pred HhhC-----hhhhHH--HHHHHHhhcccCCHHHHHHHHHHHHHH
Confidence 8776 556653 778888777778999998887765544
No 87
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=7.3e-05 Score=80.46 Aligned_cols=431 Identities=18% Similarity=0.239 Sum_probs=245.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHH-HHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhcc
Q 039062 5 VTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLS-LSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWL 83 (871)
Q Consensus 5 l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~-l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~ 83 (871)
+...+....++|+.+|..|-+.+..+.-....+|+.- +...+. +.++.+|..|++...++.....
T Consensus 88 vnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~--d~~~yvRktaa~~vakl~~~~~------------ 153 (734)
T KOG1061|consen 88 VNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLK--DDDPYVRKTAAVCVAKLFDIDP------------ 153 (734)
T ss_pred hhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhcc--CCChhHHHHHHHHHHHhhcCCh------------
Confidence 3456677889999999999998876655322333332 333333 4578999999988877654221
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCc----hHHHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 039062 84 SLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQW----PELIVSLLSNVHQLPAHVKQATLETLGYLC 159 (871)
Q Consensus 84 ~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~----~~ll~~L~~~l~~~~~~~r~~al~~l~~l~ 159 (871)
.-.....+...|-..+.++++.|-..+..++..|.... +.... +.++..++..+..-++- +-+.++..+.
T Consensus 154 --~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~-~~~~~~~l~~~~~~~lL~al~ec~EW---~qi~IL~~l~ 227 (734)
T KOG1061|consen 154 --DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH-PSVNLLELNPQLINKLLEALNECTEW---GQIFILDCLA 227 (734)
T ss_pred --hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC-CCCCcccccHHHHHHHHHHHHHhhhh---hHHHHHHHHH
Confidence 11112345556666777888988888888888888765 21122 44555555544333322 2344555555
Q ss_pred hccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHH
Q 039062 160 EEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAA 239 (871)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a 239 (871)
+.. |+. ......++..+...+. +.+..|-..+.+.+...+.+... + .......+-+.+..++..+ +++.-.+
T Consensus 228 ~y~-p~d--~~ea~~i~~r~~p~Lq--h~n~avvlsavKv~l~~~~~~~~-~-~~~~~~K~~~pl~tlls~~-~e~qyva 299 (734)
T KOG1061|consen 228 EYV-PKD--SREAEDICERLTPRLQ--HANSAVVLSAVKVILQLVKYLKQ-V-NELLFKKVAPPLVTLLSSE-SEIQYVA 299 (734)
T ss_pred hcC-CCC--chhHHHHHHHhhhhhc--cCCcceEeehHHHHHHHHHHHHH-H-HHHHHHHhcccceeeeccc-chhhHHH
Confidence 555 322 2345678888888888 88888999999999888776543 1 1111233333344444443 4888888
Q ss_pred HHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhh
Q 039062 240 FECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALP 319 (871)
Q Consensus 240 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (871)
+.-+.-++...|..+...+..++- . -++--.+...-++++..++..+ .+.
T Consensus 300 LrNi~lil~~~p~~~~~~~~~Ff~----k-ynDPiYvK~eKleil~~la~~~-------------------------nl~ 349 (734)
T KOG1061|consen 300 LRNINLILQKRPEILKVEIKVFFC----K-YNDPIYVKLEKLEILIELANDA-------------------------NLA 349 (734)
T ss_pred HhhHHHHHHhChHHHHhHhHeeee----e-cCCchhhHHHHHHHHHHHhhHh-------------------------HHH
Confidence 888888888888765544332221 1 1222245555566665554432 112
Q ss_pred hhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCC--cccchHHHHHhhhcCCChhhHHHHHHHHHHhhcC
Q 039062 320 ALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDD--IVPLVIPFIEENIAKPDWRQREAATYAFGSILEG 397 (871)
Q Consensus 320 ~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 397 (871)
+++.-+...-+ +.| -...+.+.++++.++-...+. +++.+++.+... .+. +-..++..+..+...
T Consensus 350 qvl~El~eYat--evD-------~~fvrkaIraig~~aik~e~~~~cv~~lLell~~~---~~y-vvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 350 QVLAELKEYAT--EVD-------VDFVRKAVRAIGRLAIKAEQSNDCVSILLELLETK---VDY-VVQEAIVVIRDILRK 416 (734)
T ss_pred HHHHHHHHhhh--hhC-------HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhc---ccc-eeeehhHHHHhhhhc
Confidence 22333322111 111 123445778888888776544 444444444322 222 333345566666665
Q ss_pred CChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHH
Q 039062 398 PSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEK 476 (871)
Q Consensus 398 ~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~ 476 (871)
+ +... ..+++.+-..++.=.+|+.|.+-.|.+|++++.+++ ...++..+++.+.| ...|+..
T Consensus 417 y-P~~~----~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~------------a~elL~~f~en~~dE~~~Vql~ 479 (734)
T KOG1061|consen 417 Y-PNKY----ESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN------------ALELLESFLENFKDETAEVQLE 479 (734)
T ss_pred C-CCch----hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc------------HHHHHHHHHhhcccchHHHHHH
Confidence 4 3332 233444333331225788999999999999998862 35677788888877 4556554
Q ss_pred HHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhh-ccCChhhhhHHHHHHHHHHHHH
Q 039062 477 ACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVT-HREDAGESRLRTAAYETLNEVV 534 (871)
Q Consensus 477 a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l-~~~~~~~~~vr~~a~~~l~~l~ 534 (871)
-..+...+.-.- +. --+.+++.++... .+.+ ++.+|..++.....+.
T Consensus 480 LLta~ik~Fl~~-----p~----~tq~~l~~vL~~~~~d~~--~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 480 LLTAAIKLFLKK-----PT----ETQELLQGVLPLATADTD--NPDLRDRGLIYWRLLS 527 (734)
T ss_pred HHHHHHHHHhcC-----Cc----cHHHHHHHHHhhhhcccc--ChhhhhhHHHHHHHhh
Confidence 443333332110 11 2455566655543 3333 6678877766554444
No 88
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.51 E-value=3.9e-05 Score=85.83 Aligned_cols=281 Identities=15% Similarity=0.146 Sum_probs=179.5
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCc--cc-hhhHHHHHHHHHhh
Q 039062 106 ADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDV--VE-QDHVNKILTAVVQG 182 (871)
Q Consensus 106 ~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~--~~-~~~~~~i~~~l~~~ 182 (871)
..-+..|-..+..++..--.+.....++|.++.++.++...+|..|++++..+.... .+. .+ .-..+-|+|.+...
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~V-r~~~~~daniF~eYlfP~L~~l 515 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALV-RDIPPSDANIFPEYLFPHLNHL 515 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhc-cCCCcccchhhHhhhhhhhHhh
Confidence 345556666666666654333567889999999999999999999999999877654 221 11 11234566777766
Q ss_pred hcCCC-CCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHH---h--hccCcHHHHHHHHHHHHHHHHHhHHhhHH
Q 039062 183 MNASE-MNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCE---A--TQSAELKIRQAAFECLVSISSTYYEKLAP 256 (871)
Q Consensus 183 l~~~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~---~--l~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 256 (871)
+. | ....||.+-..++..++... -.++...++ . +++++.+ ...-..+......
T Consensus 516 ~~--d~~~~~vRiayAsnla~LA~tA----------~rFle~~q~~~~~g~~n~~nse---------t~~~~~~~~~~~~ 574 (1431)
T KOG1240|consen 516 LN--DSSAQIVRIAYASNLAQLAKTA----------YRFLELTQELRQAGMLNDPNSE---------TAPEQNYNTELQA 574 (1431)
T ss_pred hc--cCccceehhhHHhhHHHHHHHH----------HHHHHHHHHHHhcccccCcccc---------cccccccchHHHH
Confidence 66 5 66678988888888866432 122222222 1 2333322 0000111122222
Q ss_pred hHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHh-hhhhhHHHHHHHHhcccCC
Q 039062 257 YMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQ-ALPALVPLLLEILLKQEED 335 (871)
Q Consensus 257 ~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~l~~~~~d 335 (871)
.+..+-+.+...+.++.+-++..-++.+..+|-. |.+. .-.-|++.|...|.+.
T Consensus 575 L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F----------------------FGk~ksND~iLshLiTfLNDk--- 629 (1431)
T KOG1240|consen 575 LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVF----------------------FGKEKSNDVILSHLITFLNDK--- 629 (1431)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH----------------------hhhcccccchHHHHHHHhcCc---
Confidence 2223333444455666666777667776666653 1111 1123456665555321
Q ss_pred cccccccccHhHHHHHHHHHHHHHcCCC-cccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHH
Q 039062 336 QDQEEGAWNIAMAGGTCLGLVARTVGDD-IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFM 414 (871)
Q Consensus 336 ~~~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l 414 (871)
+|.+|.+-.+.+..++-..|.. +-..++|.+.+.++|++.-+-..|+.++..+.+.. -.-++++.+++..+
T Consensus 630 ------Dw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~K~~v~~i~~~v 701 (1431)
T KOG1240|consen 630 ------DWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLRKPAVKDILQDV 701 (1431)
T ss_pred ------cHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccchHHHHHHHHhh
Confidence 2999976666665555666755 55688999999999999899999999999988752 23345677888889
Q ss_pred HHHccCCCcHHHHHHHHHHHHHHhhhhc
Q 039062 415 LSALTKDPNNHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 415 ~~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (871)
...+ .+||-.||.+++..|..+...+.
T Consensus 702 ~PlL-~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 702 LPLL-CHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred hhhe-eCchHHHHHHHHHHHHHHHhhhh
Confidence 9999 99999999999998888777664
No 89
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.43 E-value=2.3e-06 Score=68.75 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhh
Q 039062 578 GLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGL 657 (871)
Q Consensus 578 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 657 (871)
...+.+++.++..++.. ..+|.+.|++.++.+++++++.+|-.|++++..+++..+..+.+|++.+++.+.+.+
T Consensus 4 ~ggli~Laa~ai~l~~~------~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKD------ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLS 77 (97)
T ss_pred hHHHHHHHHHHHHchHh------HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888877 889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhHHHHHHHHHHHH
Q 039062 658 QNFEEYQVCAVTVGVVGDI 676 (871)
Q Consensus 658 ~~~~~~~v~~~a~~~l~~l 676 (871)
.|.+. .||..| ..+..+
T Consensus 78 ~D~d~-~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 78 ADPDE-NVRSAA-ELLDRL 94 (97)
T ss_pred cCCch-hHHHHH-HHHHHH
Confidence 87754 777655 555544
No 90
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=0.0011 Score=70.05 Aligned_cols=292 Identities=16% Similarity=0.153 Sum_probs=170.1
Q ss_pred CCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHH
Q 039062 187 EMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITA 266 (871)
Q Consensus 187 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~ 266 (871)
+.+...|..+......+... +.... .........+.....+.|..+|.+|++.|..+-+. - +.-..+.+...
T Consensus 169 ~~s~~~~~~~~~~~~~lg~~-~ss~~--~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg--~---kL~~~~Y~~A~ 240 (823)
T KOG2259|consen 169 ISSTGNRLLLYCFHLPLGVS-PSSLT--HDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEG--F---KLSKACYSRAV 240 (823)
T ss_pred cccccchHHHHHHhhhcccC-CCccc--ccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc--c---cccHHHHHHHH
Confidence 34445555555444443221 22222 23355666677788888999999999999988762 1 22234566666
Q ss_pred HHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHh
Q 039062 267 KAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIA 346 (871)
Q Consensus 267 ~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r 346 (871)
..+.|+++++|..|+..+..++...+.. . +.... ........+..+...+ . |.+|.+|
T Consensus 241 ~~lsD~~e~VR~aAvqlv~v~gn~~p~~--~-----e~e~~--e~kl~D~aF~~vC~~v----~---------D~sl~VR 298 (823)
T KOG2259|consen 241 KHLSDDYEDVRKAAVQLVSVWGNRCPAP--L-----ERESE--EEKLKDAAFSSVCRAV----R---------DRSLSVR 298 (823)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhcCCCc--c-----cchhh--hhhhHHHHHHHHHHHH----h---------cCceeee
Confidence 7888999999999866544333311000 0 00000 0122333333333332 1 1236777
Q ss_pred HHHHHHHHHHHHHcC--------CCcccch-----------------------------------------H-----HHH
Q 039062 347 MAGGTCLGLVARTVG--------DDIVPLV-----------------------------------------I-----PFI 372 (871)
Q Consensus 347 ~~a~~~l~~l~~~~~--------~~~~~~l-----------------------------------------~-----~~l 372 (871)
..|+++|+.+-.... ++++..+ + ..+
T Consensus 299 V~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~ 378 (823)
T KOG2259|consen 299 VEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGAL 378 (823)
T ss_pred ehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhcccccccccccccccee
Confidence 777777665533221 1110000 0 000
Q ss_pred HhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccc
Q 039062 373 EENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIIT 452 (871)
Q Consensus 373 ~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 452 (871)
...+.+.-..+|.+|...++.++.+. +.. -...+.++...+ +|+...||.-|+.+|..++.+.. ..
T Consensus 379 VhGlEDEf~EVR~AAV~Sl~~La~ss-P~F----A~~aldfLvDMf-NDE~~~VRL~ai~aL~~Is~~l~--------i~ 444 (823)
T KOG2259|consen 379 VHGLEDEFYEVRRAAVASLCSLATSS-PGF----AVRALDFLVDMF-NDEIEVVRLKAIFALTMISVHLA--------IR 444 (823)
T ss_pred eeechHHHHHHHHHHHHHHHHHHcCC-CCc----HHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhe--------ec
Confidence 00111122568999999999999874 333 234577888889 99999999999999999998864 33
Q ss_pred hhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHH
Q 039062 453 QANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLN 531 (871)
Q Consensus 453 ~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~ 531 (871)
+..++.++..|.| +++||++.-..|... .-.-..-+...+..+++.+..+. .=|...+.|++
T Consensus 445 ----eeql~~il~~L~D~s~dvRe~l~elL~~~---------~~~d~~~i~m~v~~lL~~L~kyP----qDrd~i~~cm~ 507 (823)
T KOG2259|consen 445 ----EEQLRQILESLEDRSVDVREALRELLKNA---------RVSDLECIDMCVAHLLKNLGKYP----QDRDEILRCMG 507 (823)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHHHhc---------CCCcHHHHHHHHHHHHHHhhhCC----CCcHHHHHHHH
Confidence 3566677777777 788888766655432 11122356677777777777653 23567888898
Q ss_pred HHHHhcCC
Q 039062 532 EVVRSSTD 539 (871)
Q Consensus 532 ~l~~~~~~ 539 (871)
.+.+..+.
T Consensus 508 ~iGqnH~~ 515 (823)
T KOG2259|consen 508 RIGQNHRR 515 (823)
T ss_pred HHhccChh
Confidence 88877664
No 91
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=0.00059 Score=73.95 Aligned_cols=417 Identities=15% Similarity=0.131 Sum_probs=235.0
Q ss_pred ChhhHHHHHHHHHHhhcCCChhhhhHH-HHHHHHHHHHHccCCC-cHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHH
Q 039062 380 DWRQREAATYAFGSILEGPSPDKLLHI-VNVALSFMLSALTKDP-NNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQ 457 (871)
Q Consensus 380 ~~~~r~~a~~~l~~l~~~~~~~~~~~~-l~~i~~~l~~~l~~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 457 (871)
+...+..++.-+..+..-...+.+..+ +..++|.++..+ +++ ++.+...||++|..+++.++.. ..-....
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL-~~E~n~DIMl~AcRaltyl~evlP~S------~a~vV~~ 253 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALL-SHEHNFDIMLLACRALTYLCEVLPRS------SAIVVDE 253 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHhhccch------hheeecc
Confidence 444444444444444332222333322 478899999999 765 7899999999999999999742 1122233
Q ss_pred HHHHHHHHhccC--ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHH
Q 039062 458 QIITVLLQSMKD--TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVR 535 (871)
Q Consensus 458 ~il~~l~~~l~d--~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~ 535 (871)
..+|.|+..|.- --.|.+.+..+|..+...-. ...|..---..+-..++.+ ...++..|+.....++.
T Consensus 254 ~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~----~AiL~AG~l~a~LsylDFF------Si~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 254 HAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP----KAILQAGALSAVLSYLDFF------SIHAQRVALAIAANCCK 323 (1051)
T ss_pred cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc----HHHHhcccHHHHHHHHHHH------HHHHHHHHHHHHHHHHh
Confidence 577888777764 45789999999888865321 2222211111121222223 23567788888889999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhH-HHHHHHHHH
Q 039062 536 SSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYA-DQIMGLFLR 614 (871)
Q Consensus 536 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~i~~~l~~ 614 (871)
..+.+-..++-+.+|.|..++... |+ .....+|.|+..++..+.+. .+.+.+.+ ..++..+.+
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~--------D~-----k~ies~~ic~~ri~d~f~h~---~~kLdql~s~dLi~~~~q 387 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQ--------DK-----KPIESVCICLTRIADGFQHG---PDKLDQLCSHDLITNIQQ 387 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhc--------cc-----hhHHHHHHHHHHHHHhcccC---hHHHHHHhchhHHHHHHH
Confidence 888877788888999999988653 22 23455888999998887654 22244433 467777777
Q ss_pred HHcccCc----chhhhHHHHHHHHHHHhhhhhhhhh-HhHHHHHHhhhcCCc--------c-----hhHHHHHHHHHHHH
Q 039062 615 VFACRSA----TVHEEAMLAIGALAYAAGLDFAKYM-PDFYKYLEMGLQNFE--------E-----YQVCAVTVGVVGDI 676 (871)
Q Consensus 615 ~l~~~~~----~~~~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~--------~-----~~v~~~a~~~l~~l 676 (871)
++.-... .+....+..+..++....-.+.-.+ ..|...+...+.... + +.-.-.....+..+
T Consensus 388 Llsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eL 467 (1051)
T KOG0168|consen 388 LLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIEL 467 (1051)
T ss_pred HHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHhee
Confidence 7776533 3444445555555544333332222 234444443332110 0 00000111111111
Q ss_pred HHHhh--------------------hccccc---------HHHHHHHHHHHccCCCCCC--cCCchHHHHHHHHHHhhcc
Q 039062 677 CRALE--------------------EKILPY---------CDGIMTQLLKDLSSNQLHR--SVKPPIFSCFGDIALAIGE 725 (871)
Q Consensus 677 ~~~~~--------------------~~~~~~---------~~~i~~~l~~~l~~~~~~~--~v~~~~~~~l~~i~~~~~~ 725 (871)
....+ +.+.+| ..++...++..++..+-.. .-+.....+=..+...-++
T Consensus 468 lp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpe 547 (1051)
T KOG0168|consen 468 LPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPE 547 (1051)
T ss_pred ecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHH
Confidence 11111 111111 1233333444333321000 0011111222223334445
Q ss_pred ChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchH--HHHHHHHHHhcC
Q 039062 726 NFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAP--HILQFLDSMYME 803 (871)
Q Consensus 726 ~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~i~~~l~~~~~~ 803 (871)
.+..|...++|.+.+.+.... + ..+|..++.++..++.... .+.+...+. .+-..+..++..
T Consensus 548 l~q~F~~~llpVLveVYsSsA-----~-------~~VR~kcL~Ailrlvy~s~----seli~slLk~~~vSS~lAG~lss 611 (1051)
T KOG0168|consen 548 LLQSFGKDLLPVLVEVYSSSA-----N-------PDVRYKCLSAILRLVYFSN----SELIGSLLKNTNVSSHLAGMLSS 611 (1051)
T ss_pred HHHHHHHHHHHHHHHHHhccC-----C-------chhhHHHHHHHHHHHhhCC----HHHHHHHHhcchHHHHHHhhhhc
Confidence 577899999999999998864 2 3578888888888876532 222222222 345566677765
Q ss_pred CCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHc
Q 039062 804 KDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLS 848 (871)
Q Consensus 804 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~ 848 (871)
.+..+.--|+....-+.+-+++-|.|++... =|+..++.+..
T Consensus 612 --kD~~vlVgALQvAEiLmeKlpd~F~~~F~RE-GV~~~v~~L~~ 653 (1051)
T KOG0168|consen 612 --KDLTVLVGALQVAEILMEKLPDTFSPSFRRE-GVFHAVKQLSV 653 (1051)
T ss_pred --CCCeeEeehHHHHHHHHHHhHHHhhhhHhhh-hHHHHHHHHhc
Confidence 3455777788888888999999899887653 56666777664
No 92
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.38 E-value=1e-06 Score=63.24 Aligned_cols=55 Identities=33% Similarity=0.591 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 039062 381 WRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRI 437 (871)
Q Consensus 381 ~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~ 437 (871)
|.+|.+|+.+||.+++.. ++.+.++++.+++.+...+ +|+++.||..|+++||++
T Consensus 1 p~vR~~A~~aLg~l~~~~-~~~~~~~~~~~~~~L~~~L-~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGC-PELLQPYLPELLPALIPLL-QDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTT-HHHHHHHHHHHHHHHHHHT-TSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhccc-HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHhcC
Confidence 899999999999999887 5888999999999999999 999999999999999864
No 93
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.37 E-value=0.00011 Score=77.61 Aligned_cols=235 Identities=11% Similarity=0.142 Sum_probs=166.6
Q ss_pred CCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHH
Q 039062 493 PSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREK 572 (871)
Q Consensus 493 ~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~ 572 (871)
++..+.|+.+.++..|+..+..... .--+....|+-.++...++...++...+++.+...+..... ++.+
T Consensus 16 ~~~di~p~~~~ll~~Lf~~i~~~~s---~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~k-------NPsn 85 (435)
T PF03378_consen 16 SKADIQPFAQQLLQNLFALIEKPGS---AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSK-------NPSN 85 (435)
T ss_dssp -GGGTTCCHHHHHHHHHHHHHTT-S---TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHT-------S---
T ss_pred CHHHhhhhHHHHHHHHHHHHhcCCC---ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-------CCCC
Confidence 3678899999999999999876532 11257889999999999999999999999999988876532 2221
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhh-hhhhhhhHhHHH
Q 039062 573 QGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAG-LDFAKYMPDFYK 651 (871)
Q Consensus 573 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~l~~i~~ 651 (871)
+..-....++++.+++..... ..+....+-+.+++.+..+|+..-.+...+++..++.++.... ..+.+.+..++|
T Consensus 86 -P~FnHylFEsi~~lir~~~~~--~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~ 162 (435)
T PF03378_consen 86 -PRFNHYLFESIGALIRFVCEA--DPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFP 162 (435)
T ss_dssp -HHHHHHHHHHHHHHHHHS-GG--GHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHH
T ss_pred -cchhhhHHHHHHHHHHhccCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 345566889999999876643 1223456778899999999998877888999999999998887 566667777777
Q ss_pred HHHhhhcCCcchhHHHHHHHHHHHHHHHhhhccc--ccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccC-hH
Q 039062 652 YLEMGLQNFEEYQVCAVTVGVVGDICRALEEKIL--PYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN-FE 728 (871)
Q Consensus 652 ~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~-~~ 728 (871)
.++.-.--.....+ -....+|..+.+..+..+. +++..++...-+++.+.. --..++..+..|..+++.. +.
T Consensus 163 ~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~----~D~~gF~LL~~iv~~~p~~~l~ 237 (435)
T PF03378_consen 163 PLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA----NDHYGFDLLESIVENLPPEALE 237 (435)
T ss_dssp HHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT----CHHHHHHHHHHHHHHS-HHHHG
T ss_pred HHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC----cchHHHHHHHHHHHHCCHHHHH
Confidence 76643211111122 3456678888887776553 567788888777777652 2267899999999999874 78
Q ss_pred HhHHHHHHHHHHHHhhc
Q 039062 729 KYLMYAMPMLQSAADLS 745 (871)
Q Consensus 729 ~~~~~i~~~l~~~l~~~ 745 (871)
||+..++..+...++..
T Consensus 238 ~yl~~I~~lll~RLq~s 254 (435)
T PF03378_consen 238 PYLKQIFTLLLTRLQSS 254 (435)
T ss_dssp GGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999999875
No 94
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00019 Score=73.07 Aligned_cols=316 Identities=12% Similarity=0.080 Sum_probs=191.4
Q ss_pred HHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHH
Q 039062 353 LGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAW 432 (871)
Q Consensus 353 l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~ 432 (871)
+.+.+...++..++.++..+-....+..|+.|......+..+....-.. -...+..++..+.... .||+..+|..|+.
T Consensus 203 lqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~-~~~lL~s~~~~la~ka-~dp~a~~r~~a~r 280 (533)
T KOG2032|consen 203 LQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPKELD-KTGLLGSVLLSLANKA-TDPSAKSRGMACR 280 (533)
T ss_pred HHHHHHhhCCccHHHHHhhcccccchhcccchHHHHHHHHHHhCccccc-ccccHHHHHHHHHHhc-cCchhHHHHHHHH
Confidence 4444455555555556555555666778999999887777777642111 1134567777788888 9999999999999
Q ss_pred HHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHH
Q 039062 433 TLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD--TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLT 510 (871)
Q Consensus 433 ~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~ 510 (871)
.|++.++..+ .....+...++..++..|-| +..|.-.+..+|..+.+... ...+.+|+-++.-.+..
T Consensus 281 ~L~~~as~~P-------~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~----~~~l~~~~l~ialrlR~ 349 (533)
T KOG2032|consen 281 GLGNTASGAP-------DKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS----NDDLESYLLNIALRLRT 349 (533)
T ss_pred HHHHHhccCc-------HHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh----hcchhhhchhHHHHHHH
Confidence 9999999865 34567788899999998886 56888888888887776543 57899999999988888
Q ss_pred hhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHH-----HHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHH
Q 039062 511 VTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVL-----QLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQ 585 (871)
Q Consensus 511 ~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-----~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 585 (871)
.+.+.+ .++|.+++..++.+....+.....++- .+.|.++.+. + ..+. ...+..
T Consensus 350 l~~se~---~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~-d---------~~p~--------va~ACr 408 (533)
T KOG2032|consen 350 LFDSED---DKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQ-D---------PNPY--------VARACR 408 (533)
T ss_pred HHHhcC---hhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeC-C---------CChH--------HHHHHH
Confidence 888774 589999999999999998865443332 2223333221 1 1111 222333
Q ss_pred HHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHh----hhcCCc
Q 039062 586 VIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEM----GLQNFE 661 (871)
Q Consensus 586 ~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~----~l~~~~ 661 (871)
...+.+++.- ..+-....++.. + +.+- .-+..+-...-....++.+.+.-.+.. .++..
T Consensus 409 ~~~~~c~p~l-----~rke~~~~~q~~---l-d~~~-------~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~ss- 471 (533)
T KOG2032|consen 409 SELRTCYPNL-----VRKELYHLFQES---L-DTDM-------ARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSS- 471 (533)
T ss_pred HHHHhcCchh-----HHHHHHHHHhhh---h-HHhH-------HHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecc-
Confidence 3444444330 111111112211 1 1000 011111111001233334443333322 12222
Q ss_pred chhHHHHHHHHHHHHHHHhhhcccccH--HHHHHHHHHHccCCCCCCcCCchHHHHHHHHHH
Q 039062 662 EYQVCAVTVGVVGDICRALEEKILPYC--DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIAL 721 (871)
Q Consensus 662 ~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~ 721 (871)
-..+|..+...-+.+.-...+...++. .++...+-....++ ..+++..+..+++.+..
T Consensus 472 we~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp--~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 472 WEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDP--RPEVTDSARKALDLLSV 531 (533)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCC--CchhHHHHHHHhhhHhh
Confidence 226777777777777666665555443 46666666666666 78888888888887653
No 95
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.30 E-value=0.00024 Score=79.00 Aligned_cols=374 Identities=14% Similarity=0.163 Sum_probs=195.5
Q ss_pred HHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHH
Q 039062 384 REAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVL 463 (871)
Q Consensus 384 r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l 463 (871)
-+.++++|..+++... ....-.-..+++.+++.+ +..+..+...+..+|.+++-... ......-..+++.|
T Consensus 266 lrv~~~lLlNLAed~~-ve~kM~~~~iV~~Lv~~L-dr~n~ellil~v~fLkkLSi~~E-------NK~~m~~~giV~kL 336 (708)
T PF05804_consen 266 LRVAFYLLLNLAEDPR-VELKMVNKGIVSLLVKCL-DRENEELLILAVTFLKKLSIFKE-------NKDEMAESGIVEKL 336 (708)
T ss_pred HHHHHHHHHHHhcChH-HHHHHHhcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHH-------HHHHHHHcCCHHHH
Confidence 3466788999998752 222212257889999999 88899999989899888876543 11222334577888
Q ss_pred HHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcH
Q 039062 464 LQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETA 542 (871)
Q Consensus 464 ~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 542 (871)
.+.+.. +..++..+..+|.++.-. ..+|.....
T Consensus 337 ~kLl~s~~~~l~~~aLrlL~NLSfd--------------------------------~~~R~~mV~-------------- 370 (708)
T PF05804_consen 337 LKLLPSENEDLVNVALRLLFNLSFD--------------------------------PELRSQMVS-------------- 370 (708)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhCcC--------------------------------HHHHHHHHH--------------
Confidence 877764 567777777777777421 111111000
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcc-cCc
Q 039062 543 PMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFAC-RSA 621 (871)
Q Consensus 543 ~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~ 621 (871)
..++|.+...+.+. ..+..++..+..++. ++..+..| .+ ...++.++.++-. ++.
T Consensus 371 ---~GlIPkLv~LL~d~---------------~~~~val~iLy~LS~----dd~~r~~f-~~-TdcIp~L~~~Ll~~~~~ 426 (708)
T PF05804_consen 371 ---LGLIPKLVELLKDP---------------NFREVALKILYNLSM----DDEARSMF-AY-TDCIPQLMQMLLENSEE 426 (708)
T ss_pred ---CCCcHHHHHHhCCC---------------chHHHHHHHHHHhcc----CHhhHHHH-hh-cchHHHHHHHHHhCCCc
Confidence 11222233222210 001112222222211 00000001 11 1244555554433 333
Q ss_pred chhhhHHHHHHHHHHHhhhhhhhhh-HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHcc
Q 039062 622 TVHEEAMLAIGALAYAAGLDFAKYM-PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLS 700 (871)
Q Consensus 622 ~~~~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 700 (871)
.+...++.++..++..-.. ..-.+ ...++.+++......++ ..+.++.+++++-+. ...-+...+..+...+.
T Consensus 427 ~v~~eliaL~iNLa~~~rn-aqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~-~k~~f~~~i~~L~~~v~ 500 (708)
T PF05804_consen 427 EVQLELIALLINLALNKRN-AQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGP-LKELFVDFIGDLAKIVS 500 (708)
T ss_pred cccHHHHHHHHHHhcCHHH-HHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCch-HHHHHHHHHHHHHHHhh
Confidence 4444444444444422211 11111 13344444443323232 244567777766532 22222334444445555
Q ss_pred CCCCCCcCCchHHHHHHHHHHhh--ccChHHhHH--HHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 039062 701 SNQLHRSVKPPIFSCFGDIALAI--GENFEKYLM--YAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQG 776 (871)
Q Consensus 701 ~~~~~~~v~~~~~~~l~~i~~~~--~~~~~~~~~--~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~ 776 (871)
..+ +. ...+.|+|.++.-. +.++..++. .++|.+.+.+.... .++ ++.-.++..++.++..
T Consensus 501 ~~~-~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~----~~d-------Dl~LE~Vi~~gtla~d 565 (708)
T PF05804_consen 501 SGD-SE---EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGA----SED-------DLLLEVVILLGTLASD 565 (708)
T ss_pred cCC-cH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCC----CCh-------HHHHHHHHHHHHHHCC
Confidence 442 22 45666666666543 335677775 48888888886542 121 2333455555555432
Q ss_pred ccCCccccccccch--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhh
Q 039062 777 FKNSPKTQLLIPYA--PHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMI 854 (871)
Q Consensus 777 ~~~~~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~ 854 (871)
+...+.+ ..+++.+..+++....|+++...++-+|..+..+ +......+.+...+..++. +..+++..+
T Consensus 566 -------~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylid-L~~d~N~~i 636 (708)
T PF05804_consen 566 -------PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLID-LMHDKNAEI 636 (708)
T ss_pred -------HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHH-HhcCCCHHH
Confidence 1111221 2567777777776667899999999999999887 3444444443333444444 444789999
Q ss_pred HHHHHHHHHHHH
Q 039062 855 KESAEWARLAIN 866 (871)
Q Consensus 855 ~~~~~~~~~~~~ 866 (871)
|+.|..++.-|.
T Consensus 637 r~~~d~~Ldii~ 648 (708)
T PF05804_consen 637 RKVCDNALDIIA 648 (708)
T ss_pred HHHHHHHHHHHH
Confidence 999998887664
No 96
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.29 E-value=0.011 Score=65.34 Aligned_cols=157 Identities=13% Similarity=0.194 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCc
Q 039062 542 APMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSA 621 (871)
Q Consensus 542 ~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 621 (871)
+.++..+.|.+.+.+... +. ..+.....+++.+....+.. .+.|..+.++|.+++.|.-+|.
T Consensus 862 QRfF~~ivP~l~~~~~t~--------~~-----~~K~~yl~~LshVl~~vP~~-----vllp~~~~LlPLLLq~Ls~~D~ 923 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETA--------PG-----SQKHNYLEALSHVLTNVPKQ-----VLLPQFPMLLPLLLQALSMPDV 923 (1030)
T ss_pred HHHHHhhHHHHHHHhccC--------Cc-----cchhHHHHHHHHHHhcCCHH-----hhccchhhHHHHHHHhcCCCcc
Confidence 356678888888877621 11 12344677888888776654 4789999999999999999999
Q ss_pred chhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcc--hhHHHHHHHHHHHHHHHhh-hcccccHHHHHHHHHHH
Q 039062 622 TVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEE--YQVCAVTVGVVGDICRALE-EKILPYCDGIMTQLLKD 698 (871)
Q Consensus 622 ~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~--~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~ 698 (871)
.+|-.++.++..+....+.-...|+.+++|.++..-.+.+. ..+|..|+.+++.+.+..+ ..+.+|.+.++..+...
T Consensus 924 ~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~ 1003 (1030)
T KOG1967|consen 924 IVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKI 1003 (1030)
T ss_pred chhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhc
Confidence 99999999999999999888889999999999977665543 5789999999999999777 67899999999999999
Q ss_pred ccCCCCCCcCCchHHHHHHH
Q 039062 699 LSSNQLHRSVKPPIFSCFGD 718 (871)
Q Consensus 699 l~~~~~~~~v~~~~~~~l~~ 718 (871)
|+++ ..-+|..|..+=+.
T Consensus 1004 LdDk--KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 1004 LDDK--KRLVRKEAVDTRQN 1021 (1030)
T ss_pred cCcH--HHHHHHHHHHHhhh
Confidence 9988 78888888877554
No 97
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.27 E-value=5.2e-06 Score=75.22 Aligned_cols=130 Identities=25% Similarity=0.397 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCC----ccc-----------hh
Q 039062 106 ADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPD----VVE-----------QD 170 (871)
Q Consensus 106 ~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~----~~~-----------~~ 170 (871)
+.|++++|.+++.++..+|| ..||++++.+.+.+++ ++.....++.+|..+.++. .+ ..+ ..
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P-~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi-~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWP-QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEI-TDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHH-HTSHCCHSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCh-hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHH-HhhhchhhhHHHHHHHHHHHHH
Confidence 46899999999999999999 7999999999999887 5777888999999988887 32 111 13
Q ss_pred hHHHHHHHHHhhhcCCCCC--HHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 039062 171 HVNKILTAVVQGMNASEMN--NDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECL 243 (871)
Q Consensus 171 ~~~~i~~~l~~~l~~~~~~--~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l 243 (871)
..+.++..+.+.+...... ..+...+++|+.+++.+.+..... ...+++.+++.+++ ++.+..|++||
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~---~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELII---NSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHH---SSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhc---cHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 4566666666666642222 889999999999999876532211 13378888888864 45588998886
No 98
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=0.0056 Score=58.99 Aligned_cols=295 Identities=19% Similarity=0.212 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccch---hhHHHHHHHHHhhhcC
Q 039062 109 RSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQ---DHVNKILTAVVQGMNA 185 (871)
Q Consensus 109 r~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~---~~~~~i~~~l~~~l~~ 185 (871)
...+..|+..+++..+|-.--|++.+.|...+..++..++.-++..++.+.+.+...-.+. -.-..+++.++.++.
T Consensus 60 ttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg- 138 (524)
T KOG4413|consen 60 TTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG- 138 (524)
T ss_pred hhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc-
Confidence 3446778888888777755668899999999999999999999999999999873221111 123567788888888
Q ss_pred CCCCHHHHHHHHHHHHHhhhcchh---cccChhhHH-HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhH-HH
Q 039062 186 SEMNNDVRLAATRALYNALSFAQA---NFSNDMERD-YIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYM-QD 260 (871)
Q Consensus 186 ~~~~~~vr~~al~~l~~~~~~~~~---~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~ 260 (871)
..+..|.++|++.++.+..+... .|..+..-+ ...+.... -+.-.|...++.+..+.+..|......- ..
T Consensus 139 -geddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaak----cndiaRvRVleLIieifSiSpesaneckkSG 213 (524)
T KOG4413|consen 139 -GEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAK----CNDIARVRVLELIIEIFSISPESANECKKSG 213 (524)
T ss_pred -CCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhh----hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhh
Confidence 68889999999999997654321 111110000 01111111 1234566777777777776665544332 25
Q ss_pred HHHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhh--hhHHHHHHHHhcccCCcc
Q 039062 261 IYSITAKAVRE-DEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALP--ALVPLLLEILLKQEEDQD 337 (871)
Q Consensus 261 l~~~~~~~~~~-~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~l~~~l~~~~~d~~ 337 (871)
++..+...++. .|.-++..+++....+++.+ +.+++++ .++..+.+.+.-.+.|+
T Consensus 214 LldlLeaElkGteDtLVianciElvteLaete---------------------HgreflaQeglIdlicnIIsGadsdP- 271 (524)
T KOG4413|consen 214 LLDLLEAELKGTEDTLVIANCIELVTELAETE---------------------HGREFLAQEGLIDLICNIISGADSDP- 271 (524)
T ss_pred HHHHHHHHhcCCcceeehhhHHHHHHHHHHHh---------------------hhhhhcchhhHHHHHHHHhhCCCCCc-
Confidence 77777777765 55557778899988888764 2233332 45666666666544443
Q ss_pred cccccccHhHHHHHHHHHHHHHcCCC---------cccchHHHH---HhhhcCCChhhHHHHHHHHHHhhcCCChhh-hh
Q 039062 338 QEEGAWNIAMAGGTCLGLVARTVGDD---------IVPLVIPFI---EENIAKPDWRQREAATYAFGSILEGPSPDK-LL 404 (871)
Q Consensus 338 ~~~~~~~~r~~a~~~l~~l~~~~~~~---------~~~~l~~~l---~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~-~~ 404 (871)
|.- ..++..+.+.+|+. +...+.-++ .+.+...++...++|+-++|.+.++..... +.
T Consensus 272 -----fek----fralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlll 342 (524)
T KOG4413|consen 272 -----FEK----FRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLL 342 (524)
T ss_pred -----HHH----HHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHh
Confidence 111 22344444444432 111222222 344556778899999999999987652122 11
Q ss_pred HHHHHHHHHHHHHccCCCcHH-HHHHHHHHHHHHhhhh
Q 039062 405 HIVNVALSFMLSALTKDPNNH-VKDTTAWTLGRIFEFL 441 (871)
Q Consensus 405 ~~l~~i~~~l~~~l~~d~~~~-vr~~a~~~l~~~~~~~ 441 (871)
..-+.-...++... -|.+.. -+.+++++|..++...
T Consensus 343 kTgppaaehllara-fdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 343 KTGPPAAEHLLARA-FDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred ccCChHHHHHHHHH-hcccccchHHHHHHHHHHhhccc
Confidence 11122344455554 454432 3577888888887765
No 99
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.24 E-value=5.9e-06 Score=71.73 Aligned_cols=109 Identities=18% Similarity=0.253 Sum_probs=86.0
Q ss_pred hHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHH-HHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCC
Q 039062 368 VIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVN-VALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTI 446 (871)
Q Consensus 368 l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~-~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~ 446 (871)
+++.+.+.+.+.+|..|+.++.+++.++... +......+. .+++.+++.+ .|++++++..+++++++++...+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l-~~~~~~v~~~a~~~L~~l~~~~~---- 81 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLL-KSEDEEVVKAALWALRNLAAGPE---- 81 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHH-hCCCHHHHHHHHHHHHHHccCcH----
Confidence 4566666777888999999999999999874 344444454 7899999999 99999999999999999987653
Q ss_pred CCCccchhhH-HHHHHHHHHhccC-ChHHHHHHHHHHHHHH
Q 039062 447 GTPIITQANC-QQIITVLLQSMKD-TPNVAEKACGALYFLA 485 (871)
Q Consensus 447 ~~~~~~~~~~-~~il~~l~~~l~d-~~~v~~~a~~~l~~l~ 485 (871)
....... ..+++.+.+.+.+ +..++..++++|.+++
T Consensus 82 ---~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 ---DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred ---HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 1122222 2478899998886 7899999999999885
No 100
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.23 E-value=8.1e-05 Score=75.07 Aligned_cols=203 Identities=15% Similarity=0.191 Sum_probs=135.0
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHHHhhhhccCCCC
Q 039062 369 IPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKD-PNNHVKDTTAWTLGRIFEFLHGSTIG 447 (871)
Q Consensus 369 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d-~~~~vr~~a~~~l~~~~~~~~~~~~~ 447 (871)
...+.+.-.+..-..|+.|+.-+..+...-...--.+|+.+++-.++.-+ .| .++..|..|++.|+.++..-+.
T Consensus 289 ~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL-~d~~~~~~k~laLrvL~~ml~~Q~~---- 363 (516)
T KOG2956|consen 289 ADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVL-SDSEDEIIKKLALRVLREMLTNQPA---- 363 (516)
T ss_pred HHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-ccchhhHHHHHHHHHHHHHHHhchH----
Confidence 33344433444566788888745444433224455678888998899999 87 6777889999998888765531
Q ss_pred CCccchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHH
Q 039062 448 TPIITQANCQQIITVLLQSMKDTPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAY 527 (871)
Q Consensus 448 ~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~ 527 (871)
.+..+.+..+..++....+.+ +.-+|.++-
T Consensus 364 ------------------------------------------------~l~DstE~ai~K~Leaa~ds~--~~v~~~Aee 393 (516)
T KOG2956|consen 364 ------------------------------------------------RLFDSTEIAICKVLEAAKDSQ--DEVMRVAEE 393 (516)
T ss_pred ------------------------------------------------hhhchHHHHHHHHHHHHhCCc--hhHHHHHHH
Confidence 111223333344444444443 445666667
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHH
Q 039062 528 ETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQ 607 (871)
Q Consensus 528 ~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 607 (871)
+|+..+.++.|...... +-|.++. +|++. ...++.++..+++.+..+. +.+.++.
T Consensus 394 d~~~~las~~P~~~I~~---i~~~Ilt------------~D~~~-----~~~~iKm~Tkl~e~l~~Ee-----L~~ll~d 448 (516)
T KOG2956|consen 394 DCLTTLASHLPLQCIVN---ISPLILT------------ADEPR-----AVAVIKMLTKLFERLSAEE-----LLNLLPD 448 (516)
T ss_pred HHHHHHHhhCchhHHHH---HhhHHhc------------CcchH-----HHHHHHHHHHHHhhcCHHH-----HHHhhhh
Confidence 77777777777533222 2222222 23332 2236678888888887653 7788999
Q ss_pred HHHHHHHHHcccCcchhhhHHHHHHHHHHHhh-hhhhhhhHhHHH
Q 039062 608 IMGLFLRVFACRSATVHEEAMLAIGALAYAAG-LDFAKYMPDFYK 651 (871)
Q Consensus 608 i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~l~~i~~ 651 (871)
+.|.+++..++.++.||..+.-+|-.++...| +.+.||+.++-.
T Consensus 449 iaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~ 493 (516)
T KOG2956|consen 449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTS 493 (516)
T ss_pred hhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccH
Confidence 99999999999999999999999999999999 899999976433
No 101
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=0.026 Score=61.02 Aligned_cols=211 Identities=13% Similarity=0.045 Sum_probs=117.0
Q ss_pred CcchhhhHHHHHHHHHHHhhhhhhh----------hhHhHHHHHHhh-hcCCcchhHHHHHHHHHHHHHHHhh--hcccc
Q 039062 620 SATVHEEAMLAIGALAYAAGLDFAK----------YMPDFYKYLEMG-LQNFEEYQVCAVTVGVVGDICRALE--EKILP 686 (871)
Q Consensus 620 ~~~~~~~a~~~l~~l~~~~~~~~~~----------~l~~i~~~l~~~-l~~~~~~~v~~~a~~~l~~l~~~~~--~~~~~ 686 (871)
++...|.|+..+..+..+++..-.. .+...++.+... +...+... .++..+..+.+... ..-..
T Consensus 453 swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~l---VqLlfmE~ivRY~kff~~esq 529 (980)
T KOG2021|consen 453 SWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHEL---VQLLFMELIVRYNKFFSTESQ 529 (980)
T ss_pred hHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchH---HHHHHHHHHHHHHHHHhcchh
Confidence 4556777888888777776532111 122333433322 22232223 35555555555432 11122
Q ss_pred cHHHHHHHHHHH--ccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccC-----------C----
Q 039062 687 YCDGIMTQLLKD--LSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHT-----------A---- 749 (871)
Q Consensus 687 ~~~~i~~~l~~~--l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~-----------~---- 749 (871)
+.+-++...++- +.+. +..||..+...+.++.+.++..+.||++.++..+.+.+.....+ +
T Consensus 530 ~ip~vL~aFld~rglhn~--ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqly 607 (980)
T KOG2021|consen 530 KIPLVLNAFLDSRGLHNK--NENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLY 607 (980)
T ss_pred hhHHHHHHHccchhcccc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccce
Confidence 334444444332 2233 67899999999999999999999999999999999988322110 0
Q ss_pred ------------CC-------------ChhHHHHHHHH-----------HHH------HHHHHHHHhhhccCCcc-ccc-
Q 039062 750 ------------NV-------------DDDMTEYTNSL-----------RNG------ILEAYSGIFQGFKNSPK-TQL- 785 (871)
Q Consensus 750 ------------~~-------------d~~~~~~~~~~-----------r~~------~~~~~~~l~~~~~~~~~-~~~- 785 (871)
+. ++++.+....+ ... ++.+++.+.+....... .+.
T Consensus 608 IfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qv 687 (980)
T KOG2021|consen 608 IFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQV 687 (980)
T ss_pred eeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcc
Confidence 00 11111100000 001 12223333333222100 000
Q ss_pred -cccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccc
Q 039062 786 -LIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQ 835 (871)
Q Consensus 786 -~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~ 835 (871)
..-.+..+...++..+......+.+|.+.-.++++++-.+|+...||+|+
T Consensus 688 g~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipk 738 (980)
T KOG2021|consen 688 GNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPK 738 (980)
T ss_pred cHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHH
Confidence 11124456666666666666778899999999999999999999999986
No 102
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=98.08 E-value=0.00099 Score=65.36 Aligned_cols=246 Identities=16% Similarity=0.182 Sum_probs=162.3
Q ss_pred HHhhhcCCChhhHHHHHHHHHHhhcCCChhhhh-HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCc
Q 039062 372 IEENIAKPDWRQREAATYAFGSILEGPSPDKLL-HIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPI 450 (871)
Q Consensus 372 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 450 (871)
+..+++++++..|..|+.+|+.+.+...++.+. ..+..++.+....+ .|.. .+..+ +.++..+.... .
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl-~D~~-~~~~~-l~gl~~L~~~~--------~ 72 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL-DDHA-CVQPA-LKGLLALVKMK--------N 72 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh-ccHh-hHHHH-HHHHHHHHhCc--------C
Confidence 567889999999999999999999887544443 45677888888888 5443 34444 66666665322 2
Q ss_pred cchhhHHHHHHHHHHhccC---ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHH
Q 039062 451 ITQANCQQIITVLLQSMKD---TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAY 527 (871)
Q Consensus 451 ~~~~~~~~il~~l~~~l~d---~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~ 527 (871)
........++..+.+...- ....|..+...+..+.++.. +.+...-..++..++..+.... |++--..++
T Consensus 73 ~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~-----~~l~~~~~~fv~~~i~~~~gEk--DPRnLl~~F 145 (262)
T PF14500_consen 73 FSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR-----EALQSMGDDFVYGFIQLIDGEK--DPRNLLLSF 145 (262)
T ss_pred CChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH-----HHHHhchhHHHHHHHHHhccCC--CHHHHHHHH
Confidence 3344566777777765542 24667788888888877643 2233444567777777777665 566566788
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCC-ChhhH--HHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhh
Q 039062 528 ETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKL-SSDER--EKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQY 604 (871)
Q Consensus 528 ~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 604 (871)
+.+..++...+. ....+.+++.+..++...-. ..+|+ ..-.+++..+..|+.+ -..+
T Consensus 146 ~l~~~i~~~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s--------------~~~f 205 (262)
T PF14500_consen 146 KLLKVILQEFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS--------------TPLF 205 (262)
T ss_pred HHHHHHHHhccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC--------------cHhh
Confidence 888888877762 44455555555555432110 11222 1111344444445431 2345
Q ss_pred HHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhh-hhhhhhHhHHHHHHh
Q 039062 605 ADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGL-DFAKYMPDFYKYLEM 655 (871)
Q Consensus 605 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~l~~i~~~l~~ 655 (871)
++..++.++.-|.++...++..++..+..++...|. .+.+|+..++..+..
T Consensus 206 a~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 206 APFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 678899999999998888999999999999998885 578899888887653
No 103
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.033 Score=61.51 Aligned_cols=258 Identities=14% Similarity=0.170 Sum_probs=166.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHH-cccCcchhhhHHHHHHHHHHHhhhhhhhhhH
Q 039062 569 EREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVF-ACRSATVHEEAMLAIGALAYAAGLDFAKYMP 647 (871)
Q Consensus 569 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~ 647 (871)
+++... .....+-++..++..++.. ..+.++.++..+...= ...+..+-..+...+|.++..+++.- -|++
T Consensus 477 ~p~s~~-~tEaci~~~~sva~~~~~t------~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P-~~ln 548 (982)
T KOG2022|consen 477 DPDSLN-RTEACIFQFQSVAEYLGET------ESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP-MYLN 548 (982)
T ss_pred CchHHH-HHHHHHHHHHHHHhhcCcc------hhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC-cccC
Confidence 444332 3344677888888888876 4444444443333221 11255677788889999998887643 3778
Q ss_pred hHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhc-cC
Q 039062 648 DFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG-EN 726 (871)
Q Consensus 648 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~-~~ 726 (871)
..+|.+++.+.+. +.-..+...+..+++.+++++.||.++++...-+.+...+.....|...+.++|-+..... +.
T Consensus 549 ~sl~~L~~~Lh~s---k~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe 625 (982)
T KOG2022|consen 549 PSLPLLFQGLHNS---KESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEE 625 (982)
T ss_pred chHHHHHHHhcCc---hHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHh
Confidence 8899999998644 4555677889999999999999999999999999888776666788889999999988876 44
Q ss_pred hHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHH-HHHHHHHHhhhccCC-----cccc----------ccccch
Q 039062 727 FEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNG-ILEAYSGIFQGFKNS-----PKTQ----------LLIPYA 790 (871)
Q Consensus 727 ~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~-~~~~~~~l~~~~~~~-----~~~~----------~~~~~~ 790 (871)
...|+..++..+...++..-.++-++. .+.+|-. -+.+++.|...+... .... .+....
T Consensus 626 ~~kyl~~lin~il~qle~~l~~~i~~~-----e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~ 700 (982)
T KOG2022|consen 626 IPKYLMKLINPILSQLEINLAPGIDDQ-----ENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVL 700 (982)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCH-----HHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHH
Confidence 567888888777777765421111222 1222211 123556666665432 0000 112234
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccc-cccccchHHHHHHHHH
Q 039062 791 PHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNA-GSLIQQSLTSKDFLNE 845 (871)
Q Consensus 791 ~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~-~~~l~~~~~v~~~l~~ 845 (871)
..+++++.+.++---...++...++..++.=.+..++.| .|++++ +.+++-.
T Consensus 701 ~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~---l~~Fi~r 753 (982)
T KOG2022|consen 701 QKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPS---LCPFIVR 753 (982)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHH---HHHHHHH
Confidence 456666655543212345577777777766677777778 688887 6666555
No 104
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.028 Score=60.22 Aligned_cols=323 Identities=11% Similarity=0.118 Sum_probs=177.1
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhccc
Q 039062 133 IVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFS 212 (871)
Q Consensus 133 l~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~ 212 (871)
+..+.+-+.+.++....-|+.+++.+-+. +..+.+.+.+-+.+.+++...-||+.|.-|+..+....++...
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~r--------e~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~ 184 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSR--------EMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN 184 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccH--------hHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC
Confidence 34455556666777777788888876432 2233334444566666688889999999999998765554433
Q ss_pred ChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHH----HHHHHHHHHhhC---------CChhHHHH
Q 039062 213 NDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQ----DIYSITAKAVRE---------DEEPVALQ 279 (871)
Q Consensus 213 ~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~----~l~~~~~~~~~~---------~~~~~~~~ 279 (871)
. ....+-+..++.+.+-.+-.++...+..++++.|+.....+. .+...+...-.+ +.+-....
T Consensus 185 ~----~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 185 P----GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred h----hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 2 234555666777777677778888888888876655444333 333332222112 22333333
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCccccc-ccccHhHHH-HHHHHHHH
Q 039062 280 AIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEE-GAWNIAMAG-GTCLGLVA 357 (871)
Q Consensus 280 a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~-~~~~~r~~a-~~~l~~l~ 357 (871)
.+..+..+ .. .+++ -.+.-+.+++..+++. ..+-++.-+ ...+...+. .+++ .++
T Consensus 261 l~rlLq~~-p~------------~~D~------~~r~~l~evl~~iLnk---~~~~~~~k~vq~~na~naVLFeaI-~l~ 317 (938)
T KOG1077|consen 261 LLRLLQIY-PT------------PEDP------STRARLNEVLERILNK---AQEPPKSKKVQHSNAKNAVLFEAI-SLA 317 (938)
T ss_pred HHHHHHhC-CC------------CCCc------hHHHHHHHHHHHHHhc---cccCccccchHhhhhHHHHHHHHH-HHH
Confidence 33333222 00 0000 1111111222222222 111111000 001111111 1222 222
Q ss_pred HHcC--CCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCC-ChhhhhHHHHHHHHHHHHHccC-CCcHHHHHHHHHH
Q 039062 358 RTVG--DDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGP-SPDKLLHIVNVALSFMLSALTK-DPNNHVKDTTAWT 433 (871)
Q Consensus 358 ~~~~--~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~-~~~~~~~~l~~i~~~l~~~l~~-d~~~~vr~~a~~~ 433 (871)
-... ++.+......+.+.+++.+.+.|+-|+..+..++... ..+.++.| ...++..+ + +.+..||..+...
T Consensus 318 ~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h----~d~Ii~sL-kterDvSirrravDL 392 (938)
T KOG1077|consen 318 IHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH----QDTIINSL-KTERDVSIRRRAVDL 392 (938)
T ss_pred HHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH----HHHHHHHh-ccccchHHHHHHHHH
Confidence 2221 3344455566777888888999999998888887652 12344444 45566777 6 8888999999999
Q ss_pred HHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhh
Q 039062 434 LGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVT 512 (871)
Q Consensus 434 l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l 512 (871)
|..++..- ....++..+++.+.. ++.+|+....-..-+++.+. ..+.=|++-+++ |+...
T Consensus 393 LY~mcD~~-------------Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyA-----tDy~WyVdviLq-Liria 453 (938)
T KOG1077|consen 393 LYAMCDVS-------------NAKQIVAELLQYLETADYSIREEIVLKVAILAEKYA-----TDYSWYVDVILQ-LIRIA 453 (938)
T ss_pred HHHHhchh-------------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc-----CCcchhHHHHHH-HHHHh
Confidence 98887654 346788888887774 66777766555555665542 234445555444 44444
Q ss_pred cc
Q 039062 513 HR 514 (871)
Q Consensus 513 ~~ 514 (871)
.+
T Consensus 454 gd 455 (938)
T KOG1077|consen 454 GD 455 (938)
T ss_pred cc
Confidence 43
No 105
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=98.04 E-value=0.0012 Score=64.72 Aligned_cols=243 Identities=14% Similarity=0.160 Sum_probs=153.0
Q ss_pred HHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhcccCCC
Q 039062 414 MLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGALYFLAQGYEDVGP 493 (871)
Q Consensus 414 l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~~l~~l~~~~~~~~~ 493 (871)
+-..+ .++++.+|..|+.+|+.+.+.++.. ........-++..+...+.|...+... ..++..+...
T Consensus 4 Lg~~L-tsed~~~R~ka~~~Ls~vL~~lp~~-----~L~~~ev~~L~~F~~~rl~D~~~~~~~-l~gl~~L~~~------ 70 (262)
T PF14500_consen 4 LGEYL-TSEDPIIRAKALELLSEVLERLPPD-----FLSRQEVQVLLDFFCSRLDDHACVQPA-LKGLLALVKM------ 70 (262)
T ss_pred hhhhh-CCCCHHHHHHHHHHHHHHHHhCCHh-----hccHHHHHHHHHHHHHHhccHhhHHHH-HHHHHHHHhC------
Confidence 34567 8999999999999999999988632 234556667777778888665555544 6666666632
Q ss_pred CCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHH
Q 039062 494 SSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQ 573 (871)
Q Consensus 494 ~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~ 573 (871)
...-......++..+.+...-... ....|..++..+..++..........-..++..+++.++. +.||
T Consensus 71 ~~~~~~~~~~i~~~l~~~~~~q~~-~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~g--------EkDP--- 138 (262)
T PF14500_consen 71 KNFSPESAVKILRSLFQNVDVQSL-PQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDG--------EKDP--- 138 (262)
T ss_pred cCCChhhHHHHHHHHHHhCChhhh-hHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhcc--------CCCH---
Confidence 122223456666666654332222 4577999999999999887654444445566666666543 4454
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHH----ccc-Ccc---hhhhHHHHHHHHHHHhhhhhhhh
Q 039062 574 GELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVF----ACR-SAT---VHEEAMLAIGALAYAAGLDFAKY 645 (871)
Q Consensus 574 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l----~~~-~~~---~~~~a~~~l~~l~~~~~~~~~~~ 645 (871)
+-...++..+..+...+. +.++.+.+++.+.-.+ ..+ +.+ .++.--.++..+..+. +. |
T Consensus 139 -RnLl~~F~l~~~i~~~~~--------~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~-~~---f 205 (262)
T PF14500_consen 139 -RNLLLSFKLLKVILQEFD--------ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST-PL---F 205 (262)
T ss_pred -HHHHHHHHHHHHHHHhcc--------cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc-Hh---h
Confidence 334456677777777665 3456666666554433 111 221 3344444444443221 22 3
Q ss_pred hHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh-hcccccHHHHHHHH
Q 039062 646 MPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE-EKILPYCDGIMTQL 695 (871)
Q Consensus 646 l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l 695 (871)
-+..+|.++..+.+. ...++..++.+|..++...+ ..+.+|...+-..+
T Consensus 206 a~~~~p~LleKL~s~-~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 206 APFAFPLLLEKLDST-SPSVKLDSLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 466788888888766 44788899999999888887 45777766665544
No 106
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.03 E-value=0.00018 Score=76.15 Aligned_cols=235 Identities=14% Similarity=0.146 Sum_probs=150.3
Q ss_pred hhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhh----cCCcchhHHHHHHHHHH
Q 039062 599 YVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGL----QNFEEYQVCAVTVGVVG 674 (871)
Q Consensus 599 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l----~~~~~~~v~~~a~~~l~ 674 (871)
..+.|++.+++..++..+..+.+.--+..+.++-+++...++.+.|+...+++.+...+ +|+.++..---.+++++
T Consensus 18 ~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~ 97 (435)
T PF03378_consen 18 ADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIG 97 (435)
T ss_dssp GGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Confidence 34788999999999999988665455678999999999999888888877777665554 56777777677889999
Q ss_pred HHHHHhhh----cccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhc-cChHHhHHHHHHHHHHHHhhcccCC
Q 039062 675 DICRALEE----KILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG-ENFEKYLMYAMPMLQSAADLSAHTA 749 (871)
Q Consensus 675 ~l~~~~~~----~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~ 749 (871)
.+.+...+ .+..+-+.++|.+...|+.+ -.+.-++++..++.+....+ ..+.+....++|.+....-..
T Consensus 98 ~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~d--V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe---- 171 (435)
T PF03378_consen 98 ALIRFVCEADPEAVSQFEEALFPPFQEILQQD--VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWE---- 171 (435)
T ss_dssp HHHHHS-GGGHH---HHHHHHHHHHHHHHHTT---TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGG----
T ss_pred HHHHhccCCChhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhc----
Confidence 98887542 23345577888888888766 45677888888888888776 444444445555544222111
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhhccCCcccccc--ccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcc
Q 039062 750 NVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLL--IPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGS 827 (871)
Q Consensus 750 ~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~ 827 (871)
- .+-+-++..+++++-.. .+..+ ..++..++..+.+++.... . -..+|.++..|...++.
T Consensus 172 ------------~-~gniPalvrLL~a~i~k-~~~~i~~~~~l~~iLgvFQkLi~sk~-~---D~~gF~LL~~iv~~~p~ 233 (435)
T PF03378_consen 172 ------------R-RGNIPALVRLLQAYIKK-DPSFIVANNQLEPILGVFQKLIASKA-N---DHYGFDLLESIVENLPP 233 (435)
T ss_dssp ------------S-TTTHHHHHHHHHHHHHH-HGGG----S-CHHHHHHHHHHHT-TT-C---HHHHHHHHHHHHHHS-H
T ss_pred ------------c-CCCcCcHHHHHHHHHHh-CchhhcchhhHHHHHHHHHHHHCCCC-c---chHHHHHHHHHHHHCCH
Confidence 1 11223344444432211 12222 2567788898888887532 2 25689999999999998
Q ss_pred c-ccccccchHHHHHHHHHHHcCCChhhHHHHH
Q 039062 828 N-AGSLIQQSLTSKDFLNECLSSKDHMIKESAE 859 (871)
Q Consensus 828 ~-~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~ 859 (871)
+ ..||+++ ++.-++..+.+++.....+.-.
T Consensus 234 ~~l~~yl~~--I~~lll~RLq~skT~kf~~~fv 264 (435)
T PF03378_consen 234 EALEPYLKQ--IFTLLLTRLQSSKTEKFVKRFV 264 (435)
T ss_dssp HHHGGGHHH--HHHHHHHHHHHC--HHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHhhCCcHHHHHHHH
Confidence 5 6899998 3667788988887766655443
No 107
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.0012 Score=72.00 Aligned_cols=232 Identities=15% Similarity=0.142 Sum_probs=168.1
Q ss_pred HHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccH
Q 039062 609 MGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYC 688 (871)
Q Consensus 609 ~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 688 (871)
++..+..+.++..++|.+++..+..+++.-...-.-+-..++...+..+++.+. -+--+|+..+..++...+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds-yvyLnaI~gv~~Lcevy~------- 800 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS-YVYLNAIRGVVSLCEVYP------- 800 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc-eeeHHHHHHHHHHHHhcc-------
Confidence 555666677777889999999999998755443334556788888999987755 354455665555555443
Q ss_pred HHHHHHHHHHccCCCCC--CcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHH
Q 039062 689 DGIMTQLLKDLSSNQLH--RSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGI 766 (871)
Q Consensus 689 ~~i~~~l~~~l~~~~~~--~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~ 766 (871)
.++++.+.+...+.+.. .+.+-.+-.+++.++...|+-+..|...+.......... + ....|.+.
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvre--------p-----d~~~RaSS 867 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVRE--------P-----DHEFRASS 867 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCC--------c-----hHHHHHhH
Confidence 56667777644433212 355666779999999999999999999888877776652 2 25678899
Q ss_pred HHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccc----cchHHHHHH
Q 039062 767 LEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLI----QQSLTSKDF 842 (871)
Q Consensus 767 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l----~~~~~v~~~ 842 (871)
+..++.+++..... ...++.+....+..+.+- +.+.-+|++|.-++..+....|.+..|.+ .+ ....+
T Consensus 868 ~a~lg~Lcq~~a~~-----vsd~~~ev~~~Il~l~~~-d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~D--l~~tl 939 (982)
T KOG4653|consen 868 LANLGQLCQLLAFQ-----VSDFFHEVLQLILSLETT-DGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLID--LDETL 939 (982)
T ss_pred HHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHcc-CCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHH--HHHHH
Confidence 99999999886543 223555666666665543 46777899999999999999999888854 33 36667
Q ss_pred HHHHHcCCChhhHHHHHHHHHHHHHHh
Q 039062 843 LNECLSSKDHMIKESAEWARLAINKAI 869 (871)
Q Consensus 843 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (871)
+....+.+|..+|-.|.-+...|+.++
T Consensus 940 ~~~vr~~~dd~~klhaql~leei~a~l 966 (982)
T KOG4653|consen 940 LSYVRQHDDDGLKLHAQLCLEEIQAAL 966 (982)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence 777777788889999999988888775
No 108
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.96 E-value=0.00034 Score=78.58 Aligned_cols=194 Identities=16% Similarity=0.159 Sum_probs=142.8
Q ss_pred hHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHc-cCCCCCCcCCchHHHHHHHHHHhhc
Q 039062 646 MPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDL-SSNQLHRSVKPPIFSCFGDIALAIG 724 (871)
Q Consensus 646 l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l-~~~~~~~~v~~~~~~~l~~i~~~~~ 724 (871)
++.+.+.+...+.+ ..|+.|..|+.-+...+..-+.........++-.++... .+. +..+...++.++..|+..++
T Consensus 251 ~~ki~~~l~t~~~s-~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDa--N~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 251 LSKITKNLETEMLS-KKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDA--NINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhcChHHHHhhhc-cchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCc--chhHHHHHHHHHHHHHHhcc
Confidence 45566666666654 478999999988888777665223333334444444443 333 56677889999999999999
Q ss_pred cChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCC
Q 039062 725 ENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEK 804 (871)
Q Consensus 725 ~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 804 (871)
..|.+|...++|.+++.+... ...+|+.++.++..++.... +..++..+...+++
T Consensus 328 ~~~~~~~~~v~p~lld~lkek-------------k~~l~d~l~~~~d~~~ns~~-----------l~~~~~~I~e~lk~- 382 (815)
T KOG1820|consen 328 PLFRKYAKNVFPSLLDRLKEK-------------KSELRDALLKALDAILNSTP-----------LSKMSEAILEALKG- 382 (815)
T ss_pred hhhHHHHHhhcchHHHHhhhc-------------cHHHHHHHHHHHHHHHhccc-----------HHHHHHHHHHHhcC-
Confidence 999999999999999999775 25677777777777766422 33677788888886
Q ss_pred CCCHHHHHHHHHHHHHHHhHhcc-cccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHhc
Q 039062 805 DMDELVMKTAIGLLGDLADTLGS-NAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINKAIS 870 (871)
Q Consensus 805 ~~~~~~r~~a~~~l~~i~~~~~~-~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (871)
.+..+|..+..++....+..++ ....+..+. +.+.+.....+.|.+||.+|..++..+.+++|
T Consensus 383 -knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~--l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 383 -KNPQIKGECLLLLDRKLRKLGPKTVEKETVKT--LVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred -CChhhHHHHHHHHHHHHhhcCCcCcchhhHHH--HhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 5788999999999999999984 333444442 55566666667899999999999999999887
No 109
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.047 Score=58.17 Aligned_cols=253 Identities=16% Similarity=0.214 Sum_probs=169.2
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhc
Q 039062 4 EVTQVLLNA-QSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRW 82 (871)
Q Consensus 4 ~l~~~l~~~-~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~ 82 (871)
++..+-+.+ .+.|+..|-+||+.|.++..+ |+++..+.-++.+. ..+-...+|+..|-+.+.++.
T Consensus 6 qLe~lCk~LY~s~D~~~R~~AE~~L~e~s~s--peclskCqlll~~g-s~pYs~mlAst~L~Klvs~~t----------- 71 (1082)
T KOG1410|consen 6 QLESLCKDLYESTDPTARHRAEKALAELSES--PECLSKCQLLLERG-SYPYSQMLASTCLMKLVSRKT----------- 71 (1082)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHccC--HHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHcCCC-----------
Confidence 344444444 467999999999999999998 99999988888884 456667788888877776432
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCc----hHHHHHHHHHHHHHHhhhcCCC-----CchHHHHHHHHhhcCCChHHHHHHHH
Q 039062 83 LSLDANVKTQIKTCLLNTLTSTV----ADARSTSSQVIAKVAGIELPQK-----QWPELIVSLLSNVHQLPAHVKQATLE 153 (871)
Q Consensus 83 ~~~~~~~~~~i~~~ll~~l~~~~----~~vr~~~a~~l~~i~~~~~~~~-----~~~~ll~~L~~~l~~~~~~~r~~al~ 153 (871)
.++.+++-.||+-+++.+.... +-|-.++.+.++.+.+..|-.. .+-+.+..+...++.++.+...-++.
T Consensus 72 -~lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~ 150 (1082)
T KOG1410|consen 72 -PLPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQ 150 (1082)
T ss_pred -CCcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHH
Confidence 4788999999999999998743 5777888999999998876421 34578888888888888888888999
Q ss_pred HHHHHhhccC-CCc-------------cchhhHHHHHHHHHhhhcC------CC-CCHHHHHHHHHHHHHhhhc--chhc
Q 039062 154 TLGYLCEEVS-PDV-------------VEQDHVNKILTAVVQGMNA------SE-MNNDVRLAATRALYNALSF--AQAN 210 (871)
Q Consensus 154 ~l~~l~~~~~-~~~-------------~~~~~~~~i~~~l~~~l~~------~~-~~~~vr~~al~~l~~~~~~--~~~~ 210 (871)
+|..+..+.. ++. |..+.+-+++..-+..++. +| ....+...+++.-.+++.+ .+..
T Consensus 151 iLsqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss 230 (1082)
T KOG1410|consen 151 ILSQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSS 230 (1082)
T ss_pred HHHHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccc
Confidence 9999988762 111 1012223333333333331 11 1233445556555555433 2221
Q ss_pred ccC-----------hhhH-----HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhh-----HHhHHHHHHHHHHHh
Q 039062 211 FSN-----------DMER-----DYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKL-----APYMQDIYSITAKAV 269 (871)
Q Consensus 211 ~~~-----------~~~~-----~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~-----~~~~~~l~~~~~~~~ 269 (871)
.+. ..++ ...++..+....+-.+..-..++.|+..+++.....+ ..|+..+++-+-+.+
T Consensus 231 ~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il 310 (1082)
T KOG1410|consen 231 TDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRIL 310 (1082)
T ss_pred cccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 110 0111 2367888888887778888999999999998744333 345555666555555
Q ss_pred hC
Q 039062 270 RE 271 (871)
Q Consensus 270 ~~ 271 (871)
.+
T Consensus 311 ~n 312 (1082)
T KOG1410|consen 311 EN 312 (1082)
T ss_pred hC
Confidence 43
No 110
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.056 Score=58.97 Aligned_cols=414 Identities=12% Similarity=0.100 Sum_probs=216.3
Q ss_pred HHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHH
Q 039062 350 GTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDT 429 (871)
Q Consensus 350 ~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~ 429 (871)
..++..|+...+...+..+-.++++.+-+.+..++-+|+..=..+.... ++.+..+ ...+.... .+.+..+++-
T Consensus 118 ~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~~~-~~~vkrw----~neiqea~-~s~~~m~QyH 191 (865)
T KOG1078|consen 118 AAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPIS-FDVVKRW----ANEVQEAV-NSDNIMVQYH 191 (865)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhccc-HHHHHHH----HHhhhhcc-CcHHHHHHHH
Confidence 3556677777777777888888888888888777777665444444432 2333333 33344455 5566678888
Q ss_pred HHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHH
Q 039062 430 TAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLL 509 (871)
Q Consensus 430 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~ 509 (871)
|+-.+.++-.... -....++..+.+....++ -+.|..+...++.+.+ ..+...++.+.+-
T Consensus 192 alglLyqirk~dr-----------la~sklv~~~~~~~~~~~---~A~~~lir~~~~~l~~------~~~~~s~~~~fl~ 251 (865)
T KOG1078|consen 192 ALGLLYQIRKNDR-----------LAVSKLVQKFTRGSLKSP---LAVCMLIRIASELLKE------NQQADSPLFPFLE 251 (865)
T ss_pred HHHHHHHHHhhhH-----------HHHHHHHHHHccccccch---hHHHHHHHHHHHHhhh------cccchhhHHHHHH
Confidence 8777766644221 112223333222111111 1112211111111111 1233334444444
Q ss_pred HhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHH
Q 039062 510 TVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQ 589 (871)
Q Consensus 510 ~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 589 (871)
.++.+. ...+...+..++..+....+..+.|.+ ..+..++... . .-+|-.+...+..++.
T Consensus 252 s~l~~K---~emV~~EaArai~~l~~~~~r~l~pav-s~Lq~flssp-----------~-----~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 252 SCLRHK---SEMVIYEAARAIVSLPNTNSRELAPAV-SVLQLFLSSP-----------K-----VALRFAAVRTLNKVAM 311 (865)
T ss_pred HHHhch---hHHHHHHHHHHHhhccccCHhhcchHH-HHHHHHhcCc-----------H-----HHHHHHHHHHHHHHHH
Confidence 455543 235556677777777766665555522 2222222211 1 1356668888888887
Q ss_pred HhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHH
Q 039062 590 KLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVT 669 (871)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a 669 (871)
..+..- ..+.. .+-.+..+. -|.-+-.++..+.+.-.+.- +..++..+.....+-++ +.+...
T Consensus 312 ~~P~~v-------~~cN~---elE~lItd~---NrsIat~AITtLLKTG~e~s---v~rLm~qI~~fv~disD-eFKivv 374 (865)
T KOG1078|consen 312 KHPQAV-------TVCNL---DLESLITDS---NRSIATLAITTLLKTGTESS---VDRLMKQISSFVSDISD-EFKIVV 374 (865)
T ss_pred hCCccc-------cccch---hHHhhhccc---ccchhHHHHHHHHHhcchhH---HHHHHHHHHHHHHhccc-cceEEe
Confidence 765431 00110 111122222 24455566776665443322 22333332222222111 233334
Q ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCC
Q 039062 670 VGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTA 749 (871)
Q Consensus 670 ~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 749 (871)
+..+..++..++.. -...++.|.+.|.++. .-+-|.+++.++..++...+..=.+-+..+...+.++-
T Consensus 375 vdai~sLc~~fp~k----~~~~m~FL~~~Lr~eG-g~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce------- 442 (865)
T KOG1078|consen 375 VDAIRSLCLKFPRK----HTVMMNFLSNMLREEG-GFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCE------- 442 (865)
T ss_pred HHHHHHHHhhccHH----HHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhcc-------
Confidence 44555555544421 1344555555555532 56778888999998888766554444444444443221
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccc
Q 039062 750 NVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNA 829 (871)
Q Consensus 750 ~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~ 829 (871)
.+.-+...+.-+....... ..=..|+..|++.+. +. +.-+|.+|..++..++ .++
T Consensus 443 ------------~~~i~~rILhlLG~EgP~a---~~Pskyir~iyNRvi--LE----n~ivRaaAv~alaKfg--~~~-- 497 (865)
T KOG1078|consen 443 ------------FTQIAVRILHLLGKEGPKA---PNPSKYIRFIYNRVI--LE----NAIVRAAAVSALAKFG--AQD-- 497 (865)
T ss_pred ------------chHHHHHHHHHHhccCCCC---CCcchhhHHHhhhhh--hh----hhhhHHHHHHHHHHHh--cCC--
Confidence 1222444444444443322 122235555655432 22 3558999999999998 222
Q ss_pred cccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHHH
Q 039062 830 GSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAIN 866 (871)
Q Consensus 830 ~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~ 866 (871)
+.++.+ |.-+++.+..+.|..+|+.|.+++..++
T Consensus 498 -~~l~~s--I~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 498 -VVLLPS--ILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred -CCcccc--HHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 344443 8889999999999999999999999887
No 111
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.92 E-value=0.0011 Score=67.31 Aligned_cols=192 Identities=15% Similarity=0.194 Sum_probs=133.4
Q ss_pred HHHHHHHHhhccCcHHHHHHHHH-HHHHHHHHhHHhhHHhHHHHHHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHhhhh
Q 039062 219 YIMRVVCEATQSAELKIRQAAFE-CLVSISSTYYEKLAPYMQDIYSITAKAVRE-DEEPVALQAIEFWSSICDEEIDILE 296 (871)
Q Consensus 219 ~i~~~l~~~l~~~~~~~~~~a~~-~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~a~~~~~~l~~~~~~~~~ 296 (871)
.+.+.+.+.-.++..+-++.|+. ....+++.....|.+|+.+++..++..+.+ .++..+..|+..+..+++......
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l- 365 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL- 365 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh-
Confidence 34444444444445566777776 555555666788999999999999999987 777889999999999988643221
Q ss_pred hhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhh
Q 039062 297 EYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENI 376 (871)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l 376 (871)
+...+..+..++..- .+..+ -..+.++..|+..++...|-..+..+.+.|..
T Consensus 366 --------------~DstE~ai~K~Leaa-------~ds~~-----~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt-- 417 (516)
T KOG2956|consen 366 --------------FDSTEIAICKVLEAA-------KDSQD-----EVMRVAEEDCLTTLASHLPLQCIVNISPLILT-- 417 (516)
T ss_pred --------------hchHHHHHHHHHHHH-------hCCch-----hHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc--
Confidence 122333333322221 11111 15677777888888888886665555555543
Q ss_pred cCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhc
Q 039062 377 AKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 377 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (871)
.+...--+++..+..+.+....+.+...++.+.|.+++.. +.++..||.+|..||-.+....+
T Consensus 418 --~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay-~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 418 --ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAY-DSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred --CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHh-cCchHHhhhhHHHhHHHHHHHHh
Confidence 3434444555688888888777888888999999999999 99999999999999988877765
No 112
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.91 E-value=0.16 Score=64.33 Aligned_cols=551 Identities=14% Similarity=0.181 Sum_probs=285.7
Q ss_pred chHHHHH-HHHhhcCCChHHHHHHHHHHHHHhhccCCC--ccc---hhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 039062 129 WPELIVS-LLSNVHQLPAHVKQATLETLGYLCEEVSPD--VVE---QDHVNKILTAVVQGMNASEMNNDVRLAATRALYN 202 (871)
Q Consensus 129 ~~~ll~~-L~~~l~~~~~~~r~~al~~l~~l~~~~~~~--~~~---~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~ 202 (871)
...++.. +...+...+...|..+..++..++... .. ..+ .+.+..++..+..+-.. ++++.+|...+..+..
T Consensus 478 ~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~-~~~~~~~~~~~~~v~~vl~~ll~~aia-~~~~~i~~~v~~~l~~ 555 (2341)
T KOG0891|consen 478 LTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYD-IICSQTSPHALQVVKEVLSALLTVAIA-DTDPDIRIRVLSSLNE 555 (2341)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-hhhhcccchHHHHHHHHHHHHHHHhcc-CCCcchhhhHHhhhcc
Confidence 3444544 333445567778887766665555443 11 000 12244445555544443 8888888888777661
Q ss_pred hhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhh-CCChhHHHHHH
Q 039062 203 ALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVR-EDEEPVALQAI 281 (871)
Q Consensus 203 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~a~ 281 (871)
.|....-.+..+..++..+.++.-..+..+...+..+....|.++.+++....--+.+.+. +...-+...+.
T Consensus 556 -------~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a 628 (2341)
T KOG0891|consen 556 -------RFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESA 628 (2341)
T ss_pred -------chhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHH
Confidence 1211112245566677777777778888888888888887777777766543221111111 11111111111
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcC
Q 039062 282 EFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVG 361 (871)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~ 361 (871)
.-...+... .+-.+.++...++..+...+...+ ..+-+++..+++.|+...|
T Consensus 629 ~~~~~~i~~-------------------~~~~i~~~v~~~l~~~~~~~~~~~---------s~~~~~~~~~~~eL~~v~g 680 (2341)
T KOG0891|consen 629 KLLCELIIS-------------------SPVLISPYVGPILLVLLPKLQDPS---------SGVEKAVLETIGELCAVGG 680 (2341)
T ss_pred HHhhHHHHH-------------------HHHHHHhhcCchHHHHHHHHhccc---------hhhHHHHHHHHHHHHHhcc
Confidence 100001000 012233333333333333333211 2456677889999999888
Q ss_pred CCc---ccchHHHHHhhhcC-CChhhHHHHHHHHHHhhcCCChhhhhHH--HHHHHHHHHHHccCC-CcHHHHHHHHHHH
Q 039062 362 DDI---VPLVIPFIEENIAK-PDWRQREAATYAFGSILEGPSPDKLLHI--VNVALSFMLSALTKD-PNNHVKDTTAWTL 434 (871)
Q Consensus 362 ~~~---~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~--l~~i~~~l~~~l~~d-~~~~vr~~a~~~l 434 (871)
..+ ....++.+.+.+.+ .+...|.+++..++.+.+..+. .+.++ .|.++..++..+ +. ....+|..+...+
T Consensus 681 ~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~-~v~p~~~~P~ll~~l~~~~-~te~~~~ir~~~v~~~ 758 (2341)
T KOG0891|consen 681 EEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGY-VVDPYLDYPELLDILINIL-KTEQSSTIRREAIRLL 758 (2341)
T ss_pred chhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccce-EecccccChHHHHHHHHHH-hHhhhhHHHHHHHHHh
Confidence 433 23444444444433 4567889999999999876542 23333 256666666555 43 3456788888888
Q ss_pred HHHhhhhccCCCCCCccchhhHHHHHHHH--HHhccCChHHHHHHHHHHHHHHhhcccCCCCCCCcchHH-HHHHHHHHh
Q 039062 435 GRIFEFLHGSTIGTPIITQANCQQIITVL--LQSMKDTPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQ-EIVQSLLTV 511 (871)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~il~~l--~~~l~d~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~-~il~~l~~~ 511 (871)
|..+...+ +........ .+......+... ....+...+.. .. ..+++ .-+..+...
T Consensus 759 g~~g~~d~------------~~~~~~~~~~~~~~~~~~~k~~~----~~~~~~~~~~~----~~-~e~~p~v~I~~l~~~ 817 (2341)
T KOG0891|consen 759 GLLGALDP------------YKHKVTEGTSASKISSEQIKSDI----DISLLESGVNP----SN-DEYYPAVTIHALMGI 817 (2341)
T ss_pred hhhcccch------------hHHHHHhhhhhHhhhhccccccc----hHHHHHhhhhh----hh-hhhhhHHHHHHHhhh
Confidence 85544332 112211111 111111000000 01111111111 11 11111 112233333
Q ss_pred hccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 039062 512 THREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKL 591 (871)
Q Consensus 512 l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 591 (871)
+.++. ...--.....++-.+....+..+..+.++++|.++...... +.+.+.. ...-+.......
T Consensus 818 l~d~~--~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~------~~~~~~f-------~~~q~~~~~~~~ 882 (2341)
T KOG0891|consen 818 LKDPS--LSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSC------PPNLREF-------YFQQLTSLVAIV 882 (2341)
T ss_pred hhhhh--hHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhc------CcchhHH-------HHHhhhhhhhcc
Confidence 33332 11122356667777777777888899999999988776532 1222211 111111111111
Q ss_pred CCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHH
Q 039062 592 GSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVG 671 (871)
Q Consensus 592 ~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~ 671 (871)
... ..++.+.+...+..... .+..+.......+..+...++..|..|++..++..+.... .+....+.....
T Consensus 883 ~~h------~~~~~~~i~~~i~~~~~-~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l~~~~-~~~s~~~~~~~~ 954 (2341)
T KOG0891|consen 883 RQH------IRPYMESIFTLIKDFWP-PDTSLQITIISLIEDIAVALGGEFKKYLPELLPTMLTVLQ-HDKSKDRVVSRK 954 (2341)
T ss_pred chh------HhhhhhhHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchheeec-ccccchHHHHHH
Confidence 111 33344444443333332 2233444557778888888889999999998888776663 322223222222
Q ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCC
Q 039062 672 VVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANV 751 (871)
Q Consensus 672 ~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 751 (871)
..+. ....+.....|..-+.+.+++.+.+......++..+..+.+..+... .+..|...+...+...+...
T Consensus 955 ~~~~-~~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~--~~~~~~s~i~~~~~r~l~~s------ 1025 (2341)
T KOG0891|consen 955 VLQS-LQKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQV--DLSEYASRIIHPLVRVLSSS------ 1025 (2341)
T ss_pred hhHH-HHhcCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhh--HHHHHHHHHHHHHHHhhccc------
Confidence 2222 23334555666677788888888877555567777777777766543 45677777777776666542
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhccC
Q 039062 752 DDDMTEYTNSLRNGILEAYSGIFQGFKN 779 (871)
Q Consensus 752 d~~~~~~~~~~r~~~~~~~~~l~~~~~~ 779 (871)
.+++..+...++.+...++.
T Consensus 1026 --------~el~~~~~~~l~~l~~~~~~ 1045 (2341)
T KOG0891|consen 1026 --------PELRDVIMDTLIALVKQLGK 1045 (2341)
T ss_pred --------hhHHHHHHHHHHHHHHhhcC
Confidence 35666677777777777553
No 113
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.0077 Score=58.06 Aligned_cols=291 Identities=13% Similarity=0.139 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHc-CCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH----HHHHHHHHHHccCCCc
Q 039062 349 GGTCLGLVARTV-GDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV----NVALSFMLSALTKDPN 423 (871)
Q Consensus 349 a~~~l~~l~~~~-~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l----~~i~~~l~~~l~~d~~ 423 (871)
...||.++.+.. |..+.|.+.+-++..+-.++-.++.-++.-++.+.+.|+...+.+.+ ..+++.++.++ -.++
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI-gged 141 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI-GGED 141 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH-cCCc
Confidence 567888887765 78889999999999998888899999999999999998644555433 47889999999 9999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHH-hccC-----------ChHHHHHHHHHHHHHHhhcccC
Q 039062 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQ-SMKD-----------TPNVAEKACGALYFLAQGYEDV 491 (871)
Q Consensus 424 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~-~l~d-----------~~~v~~~a~~~l~~l~~~~~~~ 491 (871)
..|..+|...+.+++..-. -+..++. .+.| +.-+|.+....+..+.. ++
T Consensus 142 deVAkAAiesikrialfpa----------------aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifS-iS-- 202 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALFPA----------------ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFS-IS-- 202 (524)
T ss_pred HHHHHHHHHHHHHHHhcHH----------------HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHh-cC--
Confidence 9999999999998875432 1111111 1111 22233344443333321 11
Q ss_pred CCCCCCcchH--HHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHHHHHhhhccCCCh
Q 039062 492 GPSSPLTPFF--QEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMV--LQLVPVIMMELHKTLEGQKLSS 567 (871)
Q Consensus 492 ~~~~~l~~~~--~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~~~~ 567 (871)
+. ...+. ..++..+..-+.... +.-++..+++....+...-- -.+|+ ..+++.+.+++... +
T Consensus 203 --pe-saneckkSGLldlLeaElkGte--DtLVianciElvteLaeteH--greflaQeglIdlicnIIsGa-------d 268 (524)
T KOG4413|consen 203 --PE-SANECKKSGLLDLLEAELKGTE--DTLVIANCIELVTELAETEH--GREFLAQEGLIDLICNIISGA-------D 268 (524)
T ss_pred --HH-HHhHhhhhhHHHHHHHHhcCCc--ceeehhhHHHHHHHHHHHhh--hhhhcchhhHHHHHHHHhhCC-------C
Confidence 00 11111 233444444343322 44567677777777766432 22333 35666666666432 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCC---CchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhh-hhhh
Q 039062 568 DEREKQGELQGLLCGCLQVIIQKLGSSE---PTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAG-LDFA 643 (871)
Q Consensus 568 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~---~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~ 643 (871)
.++. . -+.++-...+.+++.. ......-.-+...+...++..+.+++...+.|+.++|.+-.... .++.
T Consensus 269 sdPf--e-----kfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadll 341 (524)
T KOG4413|consen 269 SDPF--E-----KFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLL 341 (524)
T ss_pred CCcH--H-----HHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHH
Confidence 2332 1 1223334444444431 00111222233445666777777899999999999998764432 2221
Q ss_pred -hhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHh
Q 039062 644 -KYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRAL 680 (871)
Q Consensus 644 -~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 680 (871)
.--+.-...++...-+.+...-+..++.++..++...
T Consensus 342 lkTgppaaehllarafdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 342 LKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred hccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence 1112122223222222222233446677777765543
No 114
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.079 Score=59.13 Aligned_cols=213 Identities=15% Similarity=0.096 Sum_probs=133.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCC--CCChhHHHHHHHHHHcccccchhhhHHHHhhhc
Q 039062 5 VTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELAND--DKPVDSRKLAGLILKNALDAKEQHRKFELVQRW 82 (871)
Q Consensus 5 l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~--~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~ 82 (871)
+..+++.+.+-|.+.++.-.-+|..+.+.+|. -.....+.+.+. +.++.+|.+|...+... +
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P~-~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-~-------------- 120 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKPE-LALLAVNTIQKDLQDPNEEIRGFALRTLSLL-R-------------- 120 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH-HHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-C--------------
Confidence 56778888888999999999999988887654 444444444332 56789999998777442 1
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchH--HHHHHHHhhcCCChHHHHHHHHHHHHHhh
Q 039062 83 LSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPE--LIVSLLSNVHQLPAHVKQATLETLGYLCE 160 (871)
Q Consensus 83 ~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~--ll~~L~~~l~~~~~~~r~~al~~l~~l~~ 160 (871)
.++...++-..+.+++.++++.||+.|+-++..+.+.+ + ..+++ ++..+...+.++++.+..+|+..+..+..
T Consensus 121 ---~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-~-~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 121 ---VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-K-DLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred ---hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-H-hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 23445677788889999999999999999999999876 3 24444 45556666778899999999999998876
Q ss_pred ccCCCccchhhHHHHHHHHHhhhcC-CCC-CHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHH
Q 039062 161 EVSPDVVEQDHVNKILTAVVQGMNA-SEM-NNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQA 238 (871)
Q Consensus 161 ~~~~~~~~~~~~~~i~~~l~~~l~~-~~~-~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~ 238 (871)
+. . ..+...+...+-+..-. ... ..-++..-+..+.. +.+.... ....+...+....+..++.+-..
T Consensus 196 e~-a----~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~---~~~~~~~---s~~~~~~~~~~~~~~~n~~vl~~ 264 (757)
T COG5096 196 EL-A----HGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTE---RVPTTPD---SAEDFEERLSPPLQHNNAEVLLI 264 (757)
T ss_pred hh-h----hhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHc---cCCCCCC---cHHHHHHhccchhhhCcHHHHHH
Confidence 52 1 33444444333332210 011 12333333333333 2221111 11233334444445566666666
Q ss_pred HHHHHHHHHHH
Q 039062 239 AFECLVSISST 249 (871)
Q Consensus 239 a~~~l~~l~~~ 249 (871)
++..+..+...
T Consensus 265 av~~i~~l~~~ 275 (757)
T COG5096 265 AVKVILRLLVF 275 (757)
T ss_pred HHHHHHHHhhh
Confidence 66666665543
No 115
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.87 E-value=0.00082 Score=62.37 Aligned_cols=133 Identities=14% Similarity=0.144 Sum_probs=97.1
Q ss_pred ChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHH
Q 039062 144 PAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRV 223 (871)
Q Consensus 144 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~ 223 (871)
++.+|..++.+++.++..+ | ...+...+.+...+. |+++.||..|+.++.+++... +.. .+..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-~-----~~ve~~~~~l~~~L~--D~~~~VR~~al~~Ls~Li~~d---~ik--~k~~l~~~ 67 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-P-----NLVEPYLPNLYKCLR--DEDPLVRKTALLVLSHLILED---MIK--VKGQLFSR 67 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-c-----HHHHhHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHcC---cee--ehhhhhHH
Confidence 4678999999999999888 4 345666777888888 899999999999999987531 111 22556566
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHHHH-hHHhhHHhHHHHHHHHHHHhh-----CCChhHHHHHHHHHHHHHH
Q 039062 224 VCEATQSAELKIRQAAFECLVSISST-YYEKLAPYMQDIYSITAKAVR-----EDEEPVALQAIEFWSSICD 289 (871)
Q Consensus 224 l~~~l~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~a~~~~~~l~~ 289 (871)
+..++.|+++++|..|..++..+... .+..+..++.+++..+-...+ ..+.+-+...+.++.....
T Consensus 68 ~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 68 ILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 67788999999999999999999988 677777776666664333222 2344556666676665544
No 116
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.0059 Score=66.61 Aligned_cols=421 Identities=16% Similarity=0.168 Sum_probs=210.8
Q ss_pred cHHHHHHHHHHHHHHHHHhHH-hhHHh-HHHHHHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCC
Q 039062 232 ELKIRQAAFECLVSISSTYYE-KLAPY-MQDIYSITAKAVRE-DEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDI 308 (871)
Q Consensus 232 ~~~~~~~a~~~l~~l~~~~~~-~~~~~-~~~l~~~~~~~~~~-~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 308 (871)
|+..+..++.-|.+++..-.+ .+..+ ++.+++.+...+++ .+.++-..|+.++..+|+.-+
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP---------------- 244 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP---------------- 244 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc----------------
Confidence 666666666666555543222 22211 34567777777765 467899999999999988531
Q ss_pred chhhhHHhhhh-hhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCccc-----chHHHHHhhhcCCChh
Q 039062 309 PCFYFIKQALP-ALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVP-----LVIPFIEENIAKPDWR 382 (871)
Q Consensus 309 ~~~~~~~~~~~-~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-----~l~~~l~~~l~~~~~~ 382 (871)
.-...++. ..+|+++..|..-+ -..+...+.++|..|+...|..++. .++.|+.-+ .-.
T Consensus 245 ---~S~a~vV~~~aIPvl~~kL~~Ie--------yiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFF----Si~ 309 (1051)
T KOG0168|consen 245 ---RSSAIVVDEHAIPVLLEKLLTIE--------YIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFF----SIH 309 (1051)
T ss_pred ---chhheeecccchHHHHHhhhhhh--------hhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHH----HHH
Confidence 11111111 24666666554311 1246666778888888887766543 233333222 123
Q ss_pred hHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHH
Q 039062 383 QREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITV 462 (871)
Q Consensus 383 ~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~ 462 (871)
.++.|+...........++.+. ++-+.+|.+.+.+ ...+..+-..++-|+.++++.+..... ...+-.-..++..
T Consensus 310 aQR~AlaiaaN~Cksi~sd~f~-~v~ealPlL~~lL-s~~D~k~ies~~ic~~ri~d~f~h~~~---kLdql~s~dLi~~ 384 (1051)
T KOG0168|consen 310 AQRVALAIAANCCKSIRSDEFH-FVMEALPLLTPLL-SYQDKKPIESVCICLTRIADGFQHGPD---KLDQLCSHDLITN 384 (1051)
T ss_pred HHHHHHHHHHHHHhcCCCccch-HHHHHHHHHHHHH-hhccchhHHHHHHHHHHHHHhcccChH---HHHHHhchhHHHH
Confidence 5566666666666665444443 4567789888899 888888888888899999887753200 0111112234444
Q ss_pred HHHhccCCh-----HHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChh------hh--hHHHHHHHH
Q 039062 463 LLQSMKDTP-----NVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAG------ES--RLRTAAYET 529 (871)
Q Consensus 463 l~~~l~d~~-----~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~------~~--~vr~~a~~~ 529 (871)
..+.+.-++ .+....+..|..++.+ ++.....-+...|...+...+..+... +. ..-...+..
T Consensus 385 ~~qLlsvt~t~Ls~~~~~~vIrmls~msS~----~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~ 460 (1051)
T KOG0168|consen 385 IQQLLSVTPTILSNGTYTGVIRMLSLMSSG----SPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYEL 460 (1051)
T ss_pred HHHHHhcCcccccccchhHHHHHHHHHccC----ChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHH
Confidence 444443111 2222222333322221 111111112233333333333222100 00 000122333
Q ss_pred HHHHHHhcC---CC-cHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHH---HHHHHHHH-------HHHHHHH------
Q 039062 530 LNEVVRSST---DE-TAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQG---ELQGLLCG-------CLQVIIQ------ 589 (871)
Q Consensus 530 l~~l~~~~~---~~-~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~l~~l~~------ 589 (871)
.+.++...+ .. +......+.-.+.+.-+.... + ..|++...+ .+-.+++. +-.....
T Consensus 461 ~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~-~--~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~ 537 (1051)
T KOG0168|consen 461 TSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLW-Q--WRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSA 537 (1051)
T ss_pred HHHHheeecCCcccceeehhhhhhcccccccccccc-c--CccccccccccchhhhhhhhhhccCcccchhhhhhcCCch
Confidence 333333322 11 000111111111111100000 0 001110000 00000000 0000000
Q ss_pred ---HhCCCCCchhhhhhhHHHHHHHHHHHHccc-CcchhhhHHHHHHHHHHHhhhhhh-hhhH--hHHHHHHhhhcCCcc
Q 039062 590 ---KLGSSEPTKYVFMQYADQIMGLFLRVFACR-SATVHEEAMLAIGALAYAAGLDFA-KYMP--DFYKYLEMGLQNFEE 662 (871)
Q Consensus 590 ---~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~-~~l~--~i~~~l~~~l~~~~~ 662 (871)
.++. .++.+..+...+++.+++++.+. +..||..++.+|.+++......+. ..+. .+-..+-..+. .++
T Consensus 538 r~~~l~n---qpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~ls-skD 613 (1051)
T KOG0168|consen 538 REGLLKN---QPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLS-SKD 613 (1051)
T ss_pred hhhhhhc---CHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhh-cCC
Confidence 1111 13457778889999999999885 788999999999999988765432 2221 23334444444 345
Q ss_pred hhHHHHHHHHHHHHHHHhhhcccccH--HHHHHHHHHHc
Q 039062 663 YQVCAVTVGVVGDICRALEEKILPYC--DGIMTQLLKDL 699 (871)
Q Consensus 663 ~~v~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l 699 (871)
..+..-|+.+...+++.+++.|.+++ ..++..+-++.
T Consensus 614 ~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~ 652 (1051)
T KOG0168|consen 614 LTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLS 652 (1051)
T ss_pred CeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHh
Confidence 67888899999999999998888876 45555554443
No 117
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.86 E-value=0.21 Score=63.45 Aligned_cols=116 Identities=16% Similarity=0.294 Sum_probs=84.2
Q ss_pred hhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHh
Q 039062 601 FMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRAL 680 (871)
Q Consensus 601 ~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 680 (871)
+.+|..+++..++..+.+.++.+-..+..+++.++...|..+..+....++.+.+.+.+......|.++..+++.+...-
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 55677888888899999888888888999999999999988877778778888878776666677788888888888776
Q ss_pred hhcccccH--HHHHHHHHHHccCCCCCCcCCchHHHHHH
Q 039062 681 EEKILPYC--DGIMTQLLKDLSSNQLHRSVKPPIFSCFG 717 (871)
Q Consensus 681 ~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~~~~~~~l~ 717 (871)
+-.+.||. +.++..+.+.+.... ...+|..++..+|
T Consensus 722 ~~~v~p~~~~P~ll~~l~~~~~te~-~~~ir~~~v~~~g 759 (2341)
T KOG0891|consen 722 GYVVDPYLDYPELLDILINILKTEQ-SSTIRREAIRLLG 759 (2341)
T ss_pred ceEecccccChHHHHHHHHHHhHhh-hhHHHHHHHHHhh
Confidence 65555553 566666665554332 2334444444333
No 118
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.017 Score=59.41 Aligned_cols=278 Identities=18% Similarity=0.210 Sum_probs=157.8
Q ss_pred HHHHHHHhhhcCCCCc-----hHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCC
Q 039062 114 QVIAKVAGIELPQKQW-----PELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEM 188 (871)
Q Consensus 114 ~~l~~i~~~~~~~~~~-----~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 188 (871)
.-++.++....+..-| .+++-.+.+...+++...|.-|+.+|+...+.. |+.. ..|...++..++..+-. +.
T Consensus 236 td~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~-P~kv-~th~~~~ldaii~gL~D-~~ 312 (533)
T KOG2032|consen 236 TDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGA-PDKV-RTHKTTQLDAIIRGLYD-DL 312 (533)
T ss_pred HHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccC-cHHH-HHhHHHHHHHHHHHHhc-CC
Confidence 3344455544442223 345555556667788889999999999998887 6555 67888888888877775 45
Q ss_pred CHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHH---HHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHH-
Q 039062 189 NNDVRLAATRALYNALSFAQANFSNDMERDYIMRVV---CEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQ-DIYS- 263 (871)
Q Consensus 189 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l---~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~- 263 (871)
+.+|...|+++|....+.... + ...++++++. .....+.+++.|..++..++.+....+..+..++- ++.+
T Consensus 313 ~~~V~leam~~Lt~v~~~~~~-~---~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~ 388 (533)
T KOG2032|consen 313 NEEVQLEAMKCLTMVLEKASN-D---DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKR 388 (533)
T ss_pred ccHHHHHHHHHHHHHHHhhhh-c---chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhc
Confidence 689999999999987764321 1 1224445444 34566789999999999999999876655554433 2221
Q ss_pred --HHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccc
Q 039062 264 --ITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEG 341 (871)
Q Consensus 264 --~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~ 341 (871)
.+.-.++++++.+... +......|- +++....+...++..++ .+
T Consensus 389 ~~~lllhl~d~~p~va~A-Cr~~~~~c~---------------------p~l~rke~~~~~q~~ld------~~------ 434 (533)
T KOG2032|consen 389 LAPLLLHLQDPNPYVARA-CRSELRTCY---------------------PNLVRKELYHLFQESLD------TD------ 434 (533)
T ss_pred cccceeeeCCCChHHHHH-HHHHHHhcC---------------------chhHHHHHHHHHhhhhH------Hh------
Confidence 1222346677665443 333222222 12222222222221111 00
Q ss_pred cccHhHHHHHHHHHHHHHcCCCcccchHHHHH---hhhcCCCh-hhHHHHHHHHHHhhcCCChhhhhHHH--HHHHHHHH
Q 039062 342 AWNIAMAGGTCLGLVARTVGDDIVPLVIPFIE---ENIAKPDW-RQREAATYAFGSILEGPSPDKLLHIV--NVALSFML 415 (871)
Q Consensus 342 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~---~~l~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~~l--~~i~~~l~ 415 (871)
..+. .......+.... .+.|.+.-++. ..+-+..| .+|.++....+.+..+.. ...-++. ..+...+.
T Consensus 435 --~~~~--q~Fyn~~c~~L~-~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~-~~~c~~~d~~qL~~~ls 508 (533)
T KOG2032|consen 435 --MARF--QAFYNQWCIQLN-HIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLV-RAACSSADGLQLRSSLS 508 (533)
T ss_pred --HHHH--HHHHHHHHHHHh-hhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhH-HHHHHHhhHHHHHHHHH
Confidence 1111 111111111111 12233333322 22335678 778887777777766543 2222222 34555666
Q ss_pred HHccCCCcHHHHHHHHHHHHHHhh
Q 039062 416 SALTKDPNNHVKDTTAWTLGRIFE 439 (871)
Q Consensus 416 ~~l~~d~~~~vr~~a~~~l~~~~~ 439 (871)
... .||-|+|+..+..+++....
T Consensus 509 ~l~-~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 509 TLW-RDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHc-cCCCchhHHHHHHHhhhHhh
Confidence 666 99999999999999887653
No 119
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.089 Score=57.49 Aligned_cols=472 Identities=14% Similarity=0.155 Sum_probs=236.9
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccC
Q 039062 84 SLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVS 163 (871)
Q Consensus 84 ~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~ 163 (871)
.++...-.++.=.+.+++++.+..+|+..--++..+.... ..---....+..-.+..++..|..|++.|-++...-
T Consensus 56 ~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~is---edviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~- 131 (865)
T KOG1078|consen 56 HFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKIS---EDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGT- 131 (865)
T ss_pred ccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccc---hhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcc-
Confidence 4566666677778888999999999988776666665432 111112334444444456677888888887775532
Q ss_pred CCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 039062 164 PDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECL 243 (871)
Q Consensus 164 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l 243 (871)
. ...+=..+.+++- +.++.++.+|+-.-.+++.... .......+.+.+...+.+.-++-.|+..+
T Consensus 132 ---m----~~~iery~kqaiv--d~~~avSsaalvss~hll~~~~------~~vkrw~neiqea~~s~~~m~QyHalglL 196 (865)
T KOG1078|consen 132 ---M----LQAIERYMKQAIV--DKNPAVSSAALVSSYHLLPISF------DVVKRWANEVQEAVNSDNIMVQYHALGLL 196 (865)
T ss_pred ---h----hHHHHHHHHhHee--ccccccchHHHHHHhhhhcccH------HHHHHHHHhhhhccCcHHHHHHHHHHHHH
Confidence 1 1222223344555 6777777776655555433211 11133344455555555555666777777
Q ss_pred HHHHHHhHHhhHHhHHHHHHHHHH-HhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhH
Q 039062 244 VSISSTYYEKLAPYMQDIYSITAK-AVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALV 322 (871)
Q Consensus 244 ~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (871)
..+.++..-.+. .+++.+.. .+.++-. + + .+..+.. +..++ .......+.
T Consensus 197 yqirk~drla~s----klv~~~~~~~~~~~~A--~--~--~lir~~~---~~l~~----------------~~~~~s~~~ 247 (865)
T KOG1078|consen 197 YQIRKNDRLAVS----KLVQKFTRGSLKSPLA--V--C--MLIRIAS---ELLKE----------------NQQADSPLF 247 (865)
T ss_pred HHHHhhhHHHHH----HHHHHHccccccchhH--H--H--HHHHHHH---HHhhh----------------cccchhhHH
Confidence 666543222111 22332222 1111110 0 0 0111111 01100 011111233
Q ss_pred HHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhh
Q 039062 323 PLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDK 402 (871)
Q Consensus 323 ~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~ 402 (871)
+.+-.++....+ .+...|+.++..+....+..+-| ....++..++++..-.|.+|...+..++-.. |..
T Consensus 248 ~fl~s~l~~K~e---------mV~~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm~~-P~~ 316 (865)
T KOG1078|consen 248 PFLESCLRHKSE---------MVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAMKH-PQA 316 (865)
T ss_pred HHHHHHHhchhH---------HHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhC-Ccc
Confidence 333333332110 23344566777776666666666 5666777888899999999999999888653 232
Q ss_pred hhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHh---ccCC-hHHHHHHH
Q 039062 403 LLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQS---MKDT-PNVAEKAC 478 (871)
Q Consensus 403 ~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~---l~d~-~~v~~~a~ 478 (871)
+.. .-..+-+.. .|.|..+-.-|..++-+-+. ......++..+... +.|+ ..|...|.
T Consensus 317 v~~----cN~elE~lI-td~NrsIat~AITtLLKTG~-------------e~sv~rLm~qI~~fv~disDeFKivvvdai 378 (865)
T KOG1078|consen 317 VTV----CNLDLESLI-TDSNRSIATLAITTLLKTGT-------------ESSVDRLMKQISSFVSDISDEFKIVVVDAI 378 (865)
T ss_pred ccc----cchhHHhhh-cccccchhHHHHHHHHHhcc-------------hhHHHHHHHHHHHHHHhccccceEEeHHHH
Confidence 211 112333445 66665555444444332221 22233444444333 4342 33344444
Q ss_pred HHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 039062 479 GALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHK 558 (871)
Q Consensus 479 ~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~ 558 (871)
.+|... +.. --..++..|.+.+.+.. .-..+.+.++++..++...+..-.+-+ ..+++.+.+
T Consensus 379 ~sLc~~---fp~---------k~~~~m~FL~~~Lr~eG--g~e~K~aivd~Ii~iie~~pdsKe~~L----~~LCefIED 440 (865)
T KOG1078|consen 379 RSLCLK---FPR---------KHTVMMNFLSNMLREEG--GFEFKRAIVDAIIDIIEENPDSKERGL----EHLCEFIED 440 (865)
T ss_pred HHHHhh---ccH---------HHHHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHHhCcchhhHHH----HHHHHHHHh
Confidence 444322 211 11122333333333322 234566888888888887665333333 333443332
Q ss_pred hhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHh
Q 039062 559 TLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAA 638 (871)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 638 (871)
. + ....+...+..+..-.+.. +.=..|...+.+.++ -.+..+|.+|..++..+. .
T Consensus 441 c-----------e----~~~i~~rILhlLG~EgP~a----~~Pskyir~iyNRvi----LEn~ivRaaAv~alaKfg--~ 495 (865)
T KOG1078|consen 441 C-----------E----FTQIAVRILHLLGKEGPKA----PNPSKYIRFIYNRVI----LENAIVRAAAVSALAKFG--A 495 (865)
T ss_pred c-----------c----chHHHHHHHHHHhccCCCC----CCcchhhHHHhhhhh----hhhhhhHHHHHHHHHHHh--c
Confidence 2 1 1112333444333332221 112235555555433 235668889999988887 2
Q ss_pred hhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHH
Q 039062 639 GLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICR 678 (871)
Q Consensus 639 ~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 678 (871)
+. ....+.+...+.+++.|.++ ++|..|-..+..+-.
T Consensus 496 ~~--~~l~~sI~vllkRc~~D~Dd-evRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 496 QD--VVLLPSILVLLKRCLNDSDD-EVRDRATFYLKNLEE 532 (865)
T ss_pred CC--CCccccHHHHHHHHhcCchH-HHHHHHHHHHHHhhh
Confidence 21 12345666677777777755 899888877776653
No 120
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=0.17 Score=60.38 Aligned_cols=369 Identities=12% Similarity=0.090 Sum_probs=192.5
Q ss_pred HHHHHHHHH--hhcCCchHHHHHHHHHHHHHHhhhcCCCCch-----HHHHHHHHhhcC----CCh--HHHHHHHHHHHH
Q 039062 91 TQIKTCLLN--TLTSTVADARSTSSQVIAKVAGIELPQKQWP-----ELIVSLLSNVHQ----LPA--HVKQATLETLGY 157 (871)
Q Consensus 91 ~~i~~~ll~--~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~-----~ll~~L~~~l~~----~~~--~~r~~al~~l~~ 157 (871)
.-++..|++ .|.+++..||--.|-|++.|.+.+.|+.-++ +.+..++..+.. .++ ..+..-++.+..
T Consensus 47 ~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~ 126 (1266)
T KOG1525|consen 47 LPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAK 126 (1266)
T ss_pred HHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHH
Confidence 344555555 4778899999999999999999988854442 233333332221 122 234444555544
Q ss_pred Hhhcc-CCCcc-chhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHH
Q 039062 158 LCEEV-SPDVV-EQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKI 235 (871)
Q Consensus 158 l~~~~-~~~~~-~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 235 (871)
+. .+ --+.- .+..+..++..++...+ ++.+.--..-+.++..++.- .+ .....++.+++.-+-.+..+.
T Consensus 127 ~k-~~l~~~l~d~~e~~~~~f~~f~d~~~--~~~~~~v~~~~~i~~~li~e----~d--~v~~e~L~~ll~~lv~~~~~~ 197 (1266)
T KOG1525|consen 127 VK-FCLLMLLEDCQELVHELFRTFFDLAR--KGHPKKVFNMLDIAIMLITE----ED--TVQSELLDVLLENLVKPGRDT 197 (1266)
T ss_pred hH-HHheeeccchHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHh----hc--cchHHHHHHHHHHhccCCCCc
Confidence 33 11 00000 13456667777777776 33222222233333333221 11 112557777777665556666
Q ss_pred HHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHH
Q 039062 236 RQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIK 315 (871)
Q Consensus 236 ~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (871)
...|...=..++...+..+.+.+..++.-.+..-.+.....+..-.+.+..+.. ...
T Consensus 198 ~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~-----------------------~~p 254 (1266)
T KOG1525|consen 198 IKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWR-----------------------IAP 254 (1266)
T ss_pred cHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHH-----------------------hhH
Confidence 667776666677666666665554444322222111111222222233322222 233
Q ss_pred hhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCC---CcccchHHHHHhhhcCCChhhHHHHHHHHH
Q 039062 316 QALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGD---DIVPLVIPFIEENIAKPDWRQREAATYAFG 392 (871)
Q Consensus 316 ~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~ 392 (871)
..+..++|.|...|... +. ..|..|...++.+....+. +..+.++......+.+.+..+|.+.+....
T Consensus 255 ~ll~~vip~l~~eL~se--~~-------~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~ 325 (1266)
T KOG1525|consen 255 QLLLAVIPQLEFELLSE--QE-------EVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIK 325 (1266)
T ss_pred HHHHHHHHHHHHHHhcc--hH-------HHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhH
Confidence 44555677776666532 21 4688888888887664432 334566666666778888899999777665
Q ss_pred HhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-Ch
Q 039062 393 SILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TP 471 (871)
Q Consensus 393 ~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~ 471 (871)
...-+. +..... ..+.-.+-... -|++.++|..+.-....+. .+...+.+.++..+.+.+.| .+
T Consensus 326 ~~l~~~-~~~~~~--~~~~~~l~~~~-~D~~~rir~~v~i~~~~v~-----------~~~l~~~~~ll~~~~eR~rDKk~ 390 (1266)
T KOG1525|consen 326 QCLLNN-PSIAKA--STILLALRERD-LDEDVRVRTQVVIVACDVM-----------KFKLVYIPLLLKLVAERLRDKKI 390 (1266)
T ss_pred HHHhcC-chhhhH--HHHHHHHHhhc-CChhhhheeeEEEEEeehh-----------HhhhhhhHHHHHHHHHHHhhhhH
Confidence 554432 222111 11222222233 3444444432221111111 11223344477777777777 79
Q ss_pred HHHHHHHHHHHHHHhh--cccCCCCCCCcchHHHHHHHHHHhhccC
Q 039062 472 NVAEKACGALYFLAQG--YEDVGPSSPLTPFFQEIVQSLLTVTHRE 515 (871)
Q Consensus 472 ~v~~~a~~~l~~l~~~--~~~~~~~~~l~~~~~~il~~l~~~l~~~ 515 (871)
+||..|...|..+-++ +...-....+.+-+..|-..++.++-..
T Consensus 391 ~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~ 436 (1266)
T KOG1525|consen 391 KVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYEN 436 (1266)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhc
Confidence 9999999999888774 1111124556666666666666665443
No 121
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.0039 Score=65.99 Aligned_cols=304 Identities=16% Similarity=0.147 Sum_probs=179.1
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcc
Q 039062 132 LIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANF 211 (871)
Q Consensus 132 ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~ 211 (871)
+..-+.....+.+..+|..|++.+-.+.+.. +....+++.....+. |....||.+|++.+..+....+...
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-------kL~~~~Y~~A~~~ls--D~~e~VR~aAvqlv~v~gn~~p~~~ 269 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGF-------KLSKACYSRAVKHLS--DDYEDVRKAAVQLVSVWGNRCPAPL 269 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccc-------cccHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3333666666777778888888877665532 233455667777888 8999999999999988776543111
Q ss_pred c--C--hhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHH-hhCCChhHHHHHHHHHH
Q 039062 212 S--N--DMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQ-DIYSITAKA-VREDEEPVALQAIEFWS 285 (871)
Q Consensus 212 ~--~--~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~-~~~~~~~~~~~a~~~~~ 285 (871)
. . ....+..+..++..+.+.+..+|..|.+.|+.+-....+++.+-++ +++.-.-+- .....+.. ..+-.-|+
T Consensus 270 e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~-l~s~GewS 348 (823)
T KOG2259|consen 270 ERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKA-LYSSGEWS 348 (823)
T ss_pred cchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHH-HHhcCCcc
Confidence 1 1 1123567788888899999999999999999876655444443332 122200000 00000000 00000010
Q ss_pred HHHHHHHhhhhhhcCCCCCCCC--CchhhhHHhhhhhhHHH-HHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCC
Q 039062 286 SICDEEIDILEEYGSDFTGNSD--IPCFYFIKQALPALVPL-LLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGD 362 (871)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~-l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~ 362 (871)
.- .++. ++... ...--..++|. .+..+...- +|+-+.+|.+|...+..++..-|+
T Consensus 349 sG----------------k~~~advpsee-~d~~~~siI~sGACGA~VhGl-----EDEf~EVR~AAV~Sl~~La~ssP~ 406 (823)
T KOG2259|consen 349 SG----------------KEWNADVPSEE-DDEEEESIIPSGACGALVHGL-----EDEFYEVRRAAVASLCSLATSSPG 406 (823)
T ss_pred cC----------------ccccccCchhh-ccccccccccccccceeeeec-----hHHHHHHHHHHHHHHHHHHcCCCC
Confidence 00 0000 00000 00000001110 000000000 123368999999999999876553
Q ss_pred CcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhc
Q 039062 363 DIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 363 ~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (871)
+-...+.++...+++..-.+|.-|+.++..|+.... .- .+.++.++..+ .|.++.||.+.-..|+..-
T Consensus 407 -FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~--i~----eeql~~il~~L-~D~s~dvRe~l~elL~~~~---- 474 (823)
T KOG2259|consen 407 -FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA--IR----EEQLRQILESL-EDRSVDVREALRELLKNAR---- 474 (823)
T ss_pred -cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe--ec----HHHHHHHHHHH-HhcCHHHHHHHHHHHHhcC----
Confidence 344667888889999888899999999999998742 11 34577788899 9999999998877765421
Q ss_pred cCCCCCCccchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHh
Q 039062 443 GSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGALYFLAQ 486 (871)
Q Consensus 443 ~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~~l~~l~~ 486 (871)
....+-+...+..+++.+..-|.-+.....|+..+.+
T Consensus 475 -------~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iGq 511 (823)
T KOG2259|consen 475 -------VSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGRIGQ 511 (823)
T ss_pred -------CCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHhc
Confidence 1234566777788888777555445555666766644
No 122
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.0048 Score=67.45 Aligned_cols=232 Identities=17% Similarity=0.173 Sum_probs=161.4
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhc
Q 039062 410 ALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGY 488 (871)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~ 488 (871)
-++..+..+ .|+-+.+|..++..+..+.+.-. .....+-..++...+..++| ++-|--.|+..+..+|+.+
T Consensus 728 ~~qeai~sl-~d~qvpik~~gL~~l~~l~e~r~-------~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy 799 (982)
T KOG4653|consen 728 PLQEAISSL-HDDQVPIKGYGLQMLRHLIEKRK-------KATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY 799 (982)
T ss_pred HHHHHHHHh-cCCcccchHHHHHHHHHHHHhcc-------hhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc
Confidence 466778888 99999999999999999888432 12344567889999999997 7788888888888888754
Q ss_pred ccCCCCCCCcchHHHHHHHHHHhhccCC-hhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCCh
Q 039062 489 EDVGPSSPLTPFFQEIVQSLLTVTHRED-AGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSS 567 (871)
Q Consensus 489 ~~~~~~~~l~~~~~~il~~l~~~l~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~ 567 (871)
. +.+++.+.....+.. ......|...-+++..++...|+-+..|...++..++....+
T Consensus 800 ~------------e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvre--------- 858 (982)
T KOG4653|consen 800 P------------EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVRE--------- 858 (982)
T ss_pred c------------hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCC---------
Confidence 2 234444444222111 001234455669999999999999999999888888776542
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHccc-CcchhhhHHHHHHHHHHHhhhhhhhhh
Q 039062 568 DEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACR-SATVHEEAMLAIGALAYAAGLDFAKYM 646 (871)
Q Consensus 568 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~l 646 (871)
++ ...|...+..++.++...... ...++..++..++...... ...+|++|...+..+....|.++.|++
T Consensus 859 --pd--~~~RaSS~a~lg~Lcq~~a~~------vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpil 928 (982)
T KOG4653|consen 859 --PD--HEFRASSLANLGQLCQLLAFQ------VSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPIL 928 (982)
T ss_pred --ch--HHHHHhHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHH
Confidence 22 245677888888888876644 4456677777777766653 556999999999999999998888855
Q ss_pred H----hHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHh
Q 039062 647 P----DFYKYLEMGLQNFEEYQVCAVTVGVVGDICRAL 680 (871)
Q Consensus 647 ~----~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 680 (871)
. .....+.....+.++..++..|..++..+-..+
T Consensus 929 r~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l 966 (982)
T KOG4653|consen 929 RLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAAL 966 (982)
T ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence 3 333344444444555456667777666554433
No 123
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.76 E-value=0.12 Score=57.78 Aligned_cols=166 Identities=13% Similarity=0.111 Sum_probs=109.7
Q ss_pred CCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHH
Q 039062 187 EMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITA 266 (871)
Q Consensus 187 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~ 266 (871)
+.+...|..|++-+-.-+....+ ...+++-+...+...|.++++-..--|..+.+..|+... -.++.+.
T Consensus 30 s~n~~~kidAmK~iIa~M~~G~d-------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l----LavNti~ 98 (757)
T COG5096 30 SSNDYKKIDAMKKIIAQMSLGED-------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL----LAVNTIQ 98 (757)
T ss_pred ccChHHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHH
Confidence 56777888888766554432211 244555555555577899988888877777776663322 3455566
Q ss_pred HHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHh
Q 039062 267 KAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIA 346 (871)
Q Consensus 267 ~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r 346 (871)
.-++++++.+|..|+.+++.+-.. .+++.+++.+.+.+.+. . -.+|
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~~-------------------------el~~~~~~~ik~~l~d~--~-------ayVR 144 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRVK-------------------------ELLGNIIDPIKKLLTDP--H-------AYVR 144 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcChH-------------------------HHHHHHHHHHHHHccCC--c-------HHHH
Confidence 688899999999999998777432 23334455555554321 1 2689
Q ss_pred HHHHHHHHHHHHHcCCCcccc-hHHHHHhhhcCCChhhHHHHHHHHHHhhcC
Q 039062 347 MAGGTCLGLVARTVGDDIVPL-VIPFIEENIAKPDWRQREAATYAFGSILEG 397 (871)
Q Consensus 347 ~~a~~~l~~l~~~~~~~~~~~-l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 397 (871)
+.|+-|+..+.+.-++.+-.. ....+...+.+.++.+...|+..+..+-..
T Consensus 145 k~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 145 KTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 999999888876554444334 455566677889999999988877776554
No 124
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.74 E-value=0.02 Score=64.10 Aligned_cols=374 Identities=14% Similarity=0.140 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhh
Q 039062 233 LKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFY 312 (871)
Q Consensus 233 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (871)
..+...++..|..+++.......-.-..++..+...+...+.++...++.|+..++-... ++.
T Consensus 263 eqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E-----------------NK~ 325 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKE-----------------NKD 325 (708)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------------HHH
Confidence 344456777788787764333222234678888888888888888888888887753210 011
Q ss_pred hHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcC--CCc-ccchHHHHHhhhcCCChhhHHHHHH
Q 039062 313 FIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVG--DDI-VPLVIPFIEENIAKPDWRQREAATY 389 (871)
Q Consensus 313 ~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~-~~~l~~~l~~~l~~~~~~~r~~a~~ 389 (871)
.+ .-..+++.+...+... +. .....+..+|..++..-. ..+ --.++|.+...+.+++ .|..++.
T Consensus 326 ~m--~~~giV~kL~kLl~s~--~~-------~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~ 392 (708)
T PF05804_consen 326 EM--AESGIVEKLLKLLPSE--NE-------DLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALK 392 (708)
T ss_pred HH--HHcCCHHHHHHHhcCC--CH-------HHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHH
Confidence 11 1124566666665431 11 345555666655543211 111 1123444444555543 5667788
Q ss_pred HHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHH-HHHHHHHHhcc
Q 039062 390 AFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQ-QIITVLLQSMK 468 (871)
Q Consensus 390 ~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-~il~~l~~~l~ 468 (871)
+|..++..-..+.+-. ..+.+|.+...+...+.+++....+..+.+++..-.. .+...+ ..++.|++...
T Consensus 393 iLy~LS~dd~~r~~f~-~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn--------aqlm~~g~gL~~L~~ra~ 463 (708)
T PF05804_consen 393 ILYNLSMDDEARSMFA-YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN--------AQLMCEGNGLQSLMKRAL 463 (708)
T ss_pred HHHHhccCHhhHHHHh-hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH--------HHHHHhcCcHHHHHHHHH
Confidence 8888876421111111 1245666666541445666665555555555543321 011111 22344443222
Q ss_pred CChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcC--CCcHHHHH
Q 039062 469 DTPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSST--DETAPMVL 546 (871)
Q Consensus 469 d~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~ 546 (871)
.... .-....+.++..+- ......+.+.+..+...+...+ + -+..++|+|.+..-.- .....++.
T Consensus 464 ~~~D--~lLlKlIRNiS~h~------~~~k~~f~~~i~~L~~~v~~~~--~---ee~~vE~LGiLaNL~~~~ld~~~ll~ 530 (708)
T PF05804_consen 464 KTRD--PLLLKLIRNISQHD------GPLKELFVDFIGDLAKIVSSGD--S---EEFVVECLGILANLTIPDLDWAQLLQ 530 (708)
T ss_pred hccc--HHHHHHHHHHHhcC------chHHHHHHHHHHHHHHHhhcCC--c---HHHHHHHHHHHHhcccCCcCHHHHHH
Confidence 1100 01123444554431 1233333444444445555443 2 2468888888887653 34556664
Q ss_pred --HHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhH--HHHHHHHHHHHccc--C
Q 039062 547 --QLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYA--DQIMGLFLRVFACR--S 620 (871)
Q Consensus 547 --~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~--~ 620 (871)
.++|.+.+.+.... +.+| +...++-.++.++. .+. .++.+ ..+++.++.+|+.. |
T Consensus 531 ~~~llp~L~~~L~~g~-----~~dD------l~LE~Vi~~gtla~--d~~------~A~lL~~sgli~~Li~LL~~kqeD 591 (708)
T PF05804_consen 531 EYNLLPWLKDLLKPGA-----SEDD------LLLEVVILLGTLAS--DPE------CAPLLAKSGLIPTLIELLNAKQED 591 (708)
T ss_pred hCCHHHHHHHHhCCCC-----CChH------HHHHHHHHHHHHHC--CHH------HHHHHHhCChHHHHHHHHHhhCch
Confidence 68888888775431 1222 22223333343331 111 33333 37788888888774 4
Q ss_pred cchhhhHHHHHHHHHHHhhhhhhhhh--HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHH
Q 039062 621 ATVHEEAMLAIGALAYAAGLDFAKYM--PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRA 679 (871)
Q Consensus 621 ~~~~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 679 (871)
.+..-..+-++..++.+- +.....+ ..+...++..+.+++. .+|..|=.+|..++..
T Consensus 592 dE~VlQil~~f~~ll~h~-~tr~~ll~~~~~~~ylidL~~d~N~-~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 592 DEIVLQILYVFYQLLFHE-ETREVLLKETEIPAYLIDLMHDKNA-EIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHHHHHHHHHHHHHcCh-HHHHHHHhccchHHHHHHHhcCCCH-HHHHHHHHHHHHHHHh
Confidence 556666666777776552 2221122 3577888888887644 7888777777766554
No 125
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.70 E-value=5.3e-05 Score=54.34 Aligned_cols=54 Identities=28% Similarity=0.372 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHH
Q 039062 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFL 484 (871)
Q Consensus 424 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l 484 (871)
|.||..|+++||+++...+ .....+.+.+++.|...+.| ++.||.+|+++|.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~-------~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCP-------ELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTH-------HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccH-------HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6899999999999877664 34567899999999999997 789999999999754
No 126
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.69 E-value=0.0078 Score=64.62 Aligned_cols=133 Identities=17% Similarity=0.218 Sum_probs=87.1
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHH
Q 039062 96 CLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKI 175 (871)
Q Consensus 96 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i 175 (871)
.++.+.. .+...+..+|+.|..+++. +| .--.+.++.++.++.+.+..+|..|+..|-.+|..- .++...+
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~-FP-~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~------~~~v~kv 97 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKH-FP-DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN------PEHVSKV 97 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC--G-GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--------T-HHHH
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhh-Ch-hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH------HHHHhHH
Confidence 4455544 3578999999999999977 46 344568999999999999999999999999998875 4556778
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhc---cCcHHHHHHHHHHHHHHHH
Q 039062 176 LTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQ---SAELKIRQAAFECLVSISS 248 (871)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~---~~~~~~~~~a~~~l~~l~~ 248 (871)
...|.+.|.+ .++.-+..+=++|..++...+ ...+..++..+. ..++.+|..++..|..-+.
T Consensus 98 aDvL~QlL~t--dd~~E~~~v~~sL~~ll~~d~---------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~ 162 (556)
T PF05918_consen 98 ADVLVQLLQT--DDPVELDAVKNSLMSLLKQDP---------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLK 162 (556)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHHHHHH-H---------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhc--ccHHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHh
Confidence 8888888884 555555556666666544322 334444444443 4678899999988865443
No 127
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.66 E-value=0.00059 Score=76.74 Aligned_cols=204 Identities=13% Similarity=0.126 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhh-hhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhc
Q 039062 605 ADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAG-LDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEK 683 (871)
Q Consensus 605 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~ 683 (871)
.+.+-+.+..-+.+.++.-|.+|+..+...+..-+ .....|...+...+.....|. +..+...+..+|..++..++..
T Consensus 251 ~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDa-N~~v~~~aa~~l~~ia~~lr~~ 329 (815)
T KOG1820|consen 251 LSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDA-NINVVMLAAQILELIAKKLRPL 329 (815)
T ss_pred hhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCc-chhHHHHHHHHHHHHHHhcchh
Confidence 34455556666667788889999888888776665 233345555555555555554 4478889999999999999999
Q ss_pred ccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHH
Q 039062 684 ILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLR 763 (871)
Q Consensus 684 ~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r 763 (871)
+.+|...+.+.+++.+.+. ...+|..+..++..++..+ .+..+.+.+...+... ...+|
T Consensus 330 ~~~~~~~v~p~lld~lkek--k~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~k-------------np~~k 388 (815)
T KOG1820|consen 330 FRKYAKNVFPSLLDRLKEK--KSELRDALLKALDAILNST------PLSKMSEAILEALKGK-------------NPQIK 388 (815)
T ss_pred hHHHHHhhcchHHHHhhhc--cHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCC-------------ChhhH
Confidence 9999999999999999877 6778888888887777733 3667788888888775 25677
Q ss_pred HHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhccc-ccccccc
Q 039062 764 NGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSN-AGSLIQQ 835 (871)
Q Consensus 764 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~-~~~~l~~ 835 (871)
..+...+...+..++.. .....-+..+.+.+.....| .+.+||.+|+++++.+.+.+|.+ +..+|.+
T Consensus 389 ~~~~~~l~r~~~~~~~~---~~~~~t~~~l~p~~~~~~~D--~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~ 456 (815)
T KOG1820|consen 389 GECLLLLDRKLRKLGPK---TVEKETVKTLVPHLIKHIND--TDKDVRKAALEAVAAVMKVHGEEVFKKLLKD 456 (815)
T ss_pred HHHHHHHHHHHhhcCCc---CcchhhHHHHhHHHhhhccC--CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 78888888888876532 23444566788888888776 68999999999999999999976 4466655
No 128
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.65 E-value=0.081 Score=58.11 Aligned_cols=384 Identities=13% Similarity=0.125 Sum_probs=195.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhh-----ChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHh
Q 039062 5 VTQVLLNAQSIDGTVRKHAEESLKQFQEQ-----NLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELV 79 (871)
Q Consensus 5 l~~~l~~~~s~~~~~r~~A~~~L~~~~~~-----~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~ 79 (871)
|..+|..+-|+...+|+..-+-|+.+..- +..--+..|+....+++.+.-+|+++.++++.-+.
T Consensus 25 L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~----------- 93 (501)
T PF13001_consen 25 LPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD----------- 93 (501)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh-----------
Confidence 55677888899999999999999765442 11122445667777766689999999999987665
Q ss_pred hhccCCCHHHHHHHHHHHHHhhcCCc---hHHHHHHHHHHHHHHhhh----cCCCCchHHHHHHHHhhcCCChHHHHHHH
Q 039062 80 QRWLSLDANVKTQIKTCLLNTLTSTV---ADARSTSSQVIAKVAGIE----LPQKQWPELIVSLLSNVHQLPAHVKQATL 152 (871)
Q Consensus 80 ~~~~~~~~~~~~~i~~~ll~~l~~~~---~~vr~~~a~~l~~i~~~~----~~~~~~~~ll~~L~~~l~~~~~~~r~~al 152 (871)
+++.+.+..+.+.+++++.... .......+..+-...+.. .| ..|.+.-........-.+.......+
T Consensus 94 ----Rl~~~e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l~ 168 (501)
T PF13001_consen 94 ----RLDDEERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEP-PRGSKEDEKFRDSLGLSDFCDDVFLA 168 (501)
T ss_pred ----cCCHHHHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccc-cccchhhhcHHHHHhhcchHHHHHcc
Confidence 5889999999999999998532 222223333332223221 11 12212111111110000000000000
Q ss_pred HHHHHHh----------hcc---CCCccch----------------hhHHHHHHHHHhhhcC----------------CC
Q 039062 153 ETLGYLC----------EEV---SPDVVEQ----------------DHVNKILTAVVQGMNA----------------SE 187 (871)
Q Consensus 153 ~~l~~l~----------~~~---~~~~~~~----------------~~~~~i~~~l~~~l~~----------------~~ 187 (871)
.-+.... ... .+..++. ..+.+.=-.+++.+.+ .|
T Consensus 169 ~~~~~~~~l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~d~~~~~~~liAsad 248 (501)
T PF13001_consen 169 PWFSKFLLLQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFPDEERFPPLLIASAD 248 (501)
T ss_pred hhhccccccccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCCcHhHHhheeeEEeC
Confidence 0000000 000 0011100 0011000011111111 14
Q ss_pred CCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhc-----------cCcHHHHHHHHHHHHHHHHHhHHhhHH
Q 039062 188 MNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQ-----------SAELKIRQAAFECLVSISSTYYEKLAP 256 (871)
Q Consensus 188 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~-----------~~~~~~~~~a~~~l~~l~~~~~~~~~~ 256 (871)
++..|...|-..+..+... ++. ..+++.++.+.. -.++.+|...+..|..-... ..
T Consensus 249 ~~~~V~~~ae~~LKr~~~~----~ed----~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A-----a~ 315 (501)
T PF13001_consen 249 SNSSVSDRAEDLLKRLSVS----LED----PDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA-----AT 315 (501)
T ss_pred CcchHHHHHHHHHhhcCCC----CCC----HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH-----Hh
Confidence 5555666666666553221 222 334444444333 23566777777766653221 22
Q ss_pred hHHHHHHHHHHHhhCC--ChhHHHHHHHHH---HHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhc
Q 039062 257 YMQDIYSITAKAVRED--EEPVALQAIEFW---SSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLK 331 (871)
Q Consensus 257 ~~~~l~~~~~~~~~~~--~~~~~~~a~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 331 (871)
..+.+++++...+.+. +...+..++.|+ ....... ....++.+-+.+...+...+..
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~------------------~~~~l~~l~~~i~~~g~p~~~~ 377 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHI------------------SPQILKLLRPVILSQGWPLIQD 377 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhc------------------CHHHHHHHHHHHHhcCcccccc
Confidence 3345666666777666 556777788887 4443321 0122222222233333333310
Q ss_pred ccCCcccccccccHhHHHHHHHHHHHHHcCCCccc--chHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhh---HH
Q 039062 332 QEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVP--LVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLL---HI 406 (871)
Q Consensus 332 ~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~--~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~---~~ 406 (871)
+.......+.-..|..+.++|+.++...+..+.. .++.++-..+.++....|-+.-.+++.++.... ..-. ..
T Consensus 378 -~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~-~~~~~~~~~ 455 (501)
T PF13001_consen 378 -SSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK-DLPDDEDEQ 455 (501)
T ss_pred -ccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh-ccccchhHH
Confidence 0111111223478999999999999998766533 356666666777788888888888888887642 2111 11
Q ss_pred HHHHHHHH-HHHccCCCcHHHHHHHHHHHHHHh
Q 039062 407 VNVALSFM-LSALTKDPNNHVKDTTAWTLGRIF 438 (871)
Q Consensus 407 l~~i~~~l-~~~l~~d~~~~vr~~a~~~l~~~~ 438 (871)
.......+ .... .+....+|++|++-..+..
T Consensus 456 ~~~~~~~l~~~~~-~~~~~~~R~~avk~an~~f 487 (501)
T PF13001_consen 456 KRLLLELLLLSYI-QSEVRSCRYAAVKYANACF 487 (501)
T ss_pred HHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhC
Confidence 12222223 3334 5666778888876655443
No 129
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.58 E-value=0.00083 Score=54.10 Aligned_cols=84 Identities=30% Similarity=0.403 Sum_probs=64.9
Q ss_pred HHHHhhh-cCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCC
Q 039062 370 PFIEENI-AKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGT 448 (871)
Q Consensus 370 ~~l~~~l-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 448 (871)
+.+.+.+ ++++|.+|..++.+++.+ + -+..++.+...+ +|+++.||..++++||++..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~----~-------~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL----G-------DPEAIPALIELL-KDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC----T-------HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHH---------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc----C-------CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC---------
Confidence 4555566 789999999999999832 1 125688889999 99999999999999998742
Q ss_pred CccchhhHHHHHHHHHHhccC--ChHHHHHHHHHHH
Q 039062 449 PIITQANCQQIITVLLQSMKD--TPNVAEKACGALY 482 (871)
Q Consensus 449 ~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~~l~ 482 (871)
+..++.|.+.+.+ ++.||..|+.+|+
T Consensus 61 --------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3567778887775 4567888888773
No 130
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.57 E-value=0.059 Score=66.80 Aligned_cols=194 Identities=11% Similarity=0.101 Sum_probs=121.9
Q ss_pred ChhHHHHHHHHHHcccccchhhhHHHHhhhccCCC-HHHHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHHhhhcC--CC
Q 039062 52 PVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLD-ANVKTQIKTCLLNTLTS-TVADARSTSSQVIAKVAGIELP--QK 127 (871)
Q Consensus 52 ~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~ll~~l~~-~~~~vr~~~a~~l~~i~~~~~~--~~ 127 (871)
+..++.+|.-.||+.-.+.-+ +..++ ...+..+...+...+.+ .+..+|..+.+|+..+...... ..
T Consensus 1150 n~~va~fAidsLrQLs~kfle---------~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkS 1220 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLE---------REELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKS 1220 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcc---------hhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 456778887777764322110 00011 11122233344444544 3479999999999988655432 26
Q ss_pred CchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccc---hhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhh
Q 039062 128 QWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVE---QDHVNKILTAVVQGMNASEMNNDVRLAATRALYNAL 204 (871)
Q Consensus 128 ~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~---~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (871)
+|..++..+-....+..+.....|..++..|+.+. -..+. ...+..++.++....++ ..+.++-..|+..|..+.
T Consensus 1221 GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~-f~~l~~~~~~~F~DlV~cL~~Fa~q-~~~~nISL~AI~lL~~~~ 1298 (1780)
T PLN03076 1221 GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY-FPYITETETTTFTDCVNCLIAFTNS-RFNKDISLNAIAFLRFCA 1298 (1780)
T ss_pred CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh-hhhccccchhHHHHHHHHHHHHHhC-cCcccccHHHHHHHHHHH
Confidence 99999999998888888888888999999888764 22121 35667777777776654 445677777888777653
Q ss_pred hcchhc------------------------------c-cCh---hhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHh
Q 039062 205 SFAQAN------------------------------F-SND---MERDYIMRVVCEATQSAELKIRQAAFECLVSISSTY 250 (871)
Q Consensus 205 ~~~~~~------------------------------~-~~~---~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 250 (871)
.+.... + ..+ ..|-.++..+.....++++++|..|++.|-.++..+
T Consensus 1299 ~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~y 1378 (1780)
T PLN03076 1299 TKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNH 1378 (1780)
T ss_pred HHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence 322000 0 000 122334555556667889999999999999999887
Q ss_pred HHhhHH
Q 039062 251 YEKLAP 256 (871)
Q Consensus 251 ~~~~~~ 256 (871)
+..+.+
T Consensus 1379 G~~Fs~ 1384 (1780)
T PLN03076 1379 GHLFSL 1384 (1780)
T ss_pred hccCCH
Confidence 655544
No 131
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.53 E-value=0.04 Score=57.33 Aligned_cols=280 Identities=13% Similarity=0.109 Sum_probs=144.1
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhcc-----CCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHH
Q 039062 540 ETAPMVLQLVPVIMMELHKTLEGQ-----KLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLR 614 (871)
Q Consensus 540 ~~~~~~~~ll~~l~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~ 614 (871)
++.+++..-+...++.+...+..+ ...++++.....++..+|+.+...+++.+.. +.+|++.++..+.+
T Consensus 71 DLPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~------f~~~l~~fv~~vw~ 144 (370)
T PF08506_consen 71 DLPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEE------FEPFLPTFVQAVWN 144 (370)
T ss_dssp S--HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 445555544555544444433211 1122334445678888999999998887765 88999999988888
Q ss_pred HHcccCcc-----hhhhHHHHHHHHHHHhhh--hh--hhhhHhHHHHH-HhhhcCCcchhHHHHHHHHHHHHHHHhhhcc
Q 039062 615 VFACRSAT-----VHEEAMLAIGALAYAAGL--DF--AKYMPDFYKYL-EMGLQNFEEYQVCAVTVGVVGDICRALEEKI 684 (871)
Q Consensus 615 ~l~~~~~~-----~~~~a~~~l~~l~~~~~~--~~--~~~l~~i~~~l-~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~ 684 (871)
+|..-... +...++..|+.++..... -| .++++.++..+ +..+.-.+ ++.
T Consensus 145 lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e--------------------~D~ 204 (370)
T PF08506_consen 145 LLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLRE--------------------EDE 204 (370)
T ss_dssp HHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--H--------------------HHH
T ss_pred HHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCH--------------------HHH
Confidence 88663222 333455555554432211 11 23444444422 22221111 111
Q ss_pred cccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHH
Q 039062 685 LPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRN 764 (871)
Q Consensus 685 ~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~ 764 (871)
.-|-++=.+.+-+-++.++ ...-|.+|...+-.+++..+....+.+...+..+.+.....+ . ..+.-|.
T Consensus 205 ElfEddP~EYIrrd~e~sd-~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~-----~-----~~w~~KD 273 (370)
T PF08506_consen 205 ELFEDDPEEYIRRDLEGSD-SDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNP-----S-----NNWRSKD 273 (370)
T ss_dssp HHHHHSHHHHHHHHSCSS----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-----T-----T-HHHHH
T ss_pred HHHccCHHHHHHhhccccc-cCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCC-----c-----ccHHHHH
Confidence 1112233334444444332 345677888999998888776655555554544444333321 1 1256788
Q ss_pred HHHHHHHHHhhhccCCc-cccc---cccchHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHH
Q 039062 765 GILEAYSGIFQGFKNSP-KTQL---LIPYAPHILQFLDSMYM-EKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTS 839 (871)
Q Consensus 765 ~~~~~~~~l~~~~~~~~-~~~~---~~~~~~~i~~~l~~~~~-~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v 839 (871)
+++..++++........ +... ..+..+.+...+..-++ +.+..+-+|..|+.++......++++ .+.. +
T Consensus 274 ~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~---~l~~---~ 347 (370)
T PF08506_consen 274 GALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKE---QLLQ---I 347 (370)
T ss_dssp HHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HH---HHHH---H
T ss_pred HHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHH---HHHH---H
Confidence 89999988887653210 1111 22222223333333343 33455666888888888777776542 3333 4
Q ss_pred HHHHHHHHcCCChhhHHHHHHHH
Q 039062 840 KDFLNECLSSKDHMIKESAEWAR 862 (871)
Q Consensus 840 ~~~l~~~~~~~~~~~~~~~~~~~ 862 (871)
.+.+-....+.+..|+..|++|+
T Consensus 348 ~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 348 FPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcchhhhhhhhC
Confidence 45555566678999999998874
No 132
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.50 E-value=0.15 Score=51.91 Aligned_cols=196 Identities=16% Similarity=0.138 Sum_probs=126.8
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHH--hHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhc
Q 039062 222 RVVCEATQSAELKIRQAAFECLVSISST--YYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYG 299 (871)
Q Consensus 222 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~ 299 (871)
.-.+..+.+.....|..++..+..++.. .++++..+...++..+...++....+-+..|+.++..++-.-
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl-------- 117 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL-------- 117 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc--------
Confidence 3344455666789999999999998866 356777777789999999987655444445555554443320
Q ss_pred CCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCC--ccc---chHH--HH
Q 039062 300 SDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDD--IVP---LVIP--FI 372 (871)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~--~~~---~l~~--~l 372 (871)
| ...-...++..+.|.|...+...... -..|.++..||+.++-..+.. -.. ..++ |.
T Consensus 118 ----g-----~g~~~~ei~~~~~~~L~~~l~d~s~~-------~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~ 181 (309)
T PF05004_consen 118 ----G-----AGEDSEEIFEELKPVLKRILTDSSAS-------PKARAACLEALAICTFVGGSDEEETEELMESLESIFL 181 (309)
T ss_pred ----C-----CCccHHHHHHHHHHHHHHHHhCCccc-------hHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Confidence 0 00113344555666666655432111 256777777887776654432 122 2223 11
Q ss_pred HhhhcC----------CChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhc
Q 039062 373 EENIAK----------PDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 373 ~~~l~~----------~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (871)
...... ++..+.-+|+.+++.+...+....+...+...+|.+...| ..++..||.+|-.+|+-+.+...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL-~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 182 LSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELL-DSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh
Confidence 111111 2356889999999999988754456677788899999999 99999999999999888777653
No 133
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.50 E-value=0.13 Score=55.23 Aligned_cols=143 Identities=14% Similarity=0.111 Sum_probs=97.9
Q ss_pred CChhhHHHHHHHHHHhhcCCChhhhhHHH--HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhH
Q 039062 379 PDWRQREAATYAFGSILEGPSPDKLLHIV--NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANC 456 (871)
Q Consensus 379 ~~~~~r~~a~~~l~~l~~~~~~~~~~~~l--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 456 (871)
.+-..+.||+.++-.++... +.+..-+ ..+...+++.+ .||...|..+++-++.++.-.+.+ ....++
T Consensus 389 kd~~~~aaa~l~~~s~srsV--~aL~tg~~~~dv~~plvqll-~dp~~~i~~~~lgai~NlVmefs~-------~kskfl 458 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSV--SALRTGLKRNDVAQPLVQLL-MDPEIMIMGITLGAICNLVMEFSN-------LKSKFL 458 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHH--HHHHcCCccchhHHHHHHHh-hCcchhHHHHHHHHHHHHHhhccc-------HHHHHH
Confidence 34567889999998887764 2222112 35677788888 999999999999998888777652 223333
Q ss_pred H-HHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHH
Q 039062 457 Q-QIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVV 534 (871)
Q Consensus 457 ~-~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~ 534 (871)
. ..+..+.+.+.+ .+.+|..+.|+|..++=+..+ .....++-.--.+.+....+++++ .|+++++..+..+.
T Consensus 459 ~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de---~~k~~~~~ki~a~~i~~l~nd~d~---~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 459 RNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE---EEKFQLLAKIPANLILDLINDPDW---AVQEQCFQLLRNLT 532 (678)
T ss_pred HcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH---HHHHHHHHHhhHHHHHHHHhCCCH---HHHHHHHHHHHHhh
Confidence 3 467777887777 678999999999988654432 222333434445556666777754 78889988888876
Q ss_pred Hhc
Q 039062 535 RSS 537 (871)
Q Consensus 535 ~~~ 537 (871)
-..
T Consensus 533 c~~ 535 (678)
T KOG1293|consen 533 CNS 535 (678)
T ss_pred cCc
Confidence 543
No 134
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.48 E-value=0.0028 Score=61.74 Aligned_cols=191 Identities=14% Similarity=0.176 Sum_probs=112.1
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHH--HHHHHHHHhccC-ChHHHHHHHHHHHHHHh
Q 039062 410 ALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQ--QIITVLLQSMKD-TPNVAEKACGALYFLAQ 486 (871)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~--~il~~l~~~l~d-~~~v~~~a~~~l~~l~~ 486 (871)
-++.++..|....+|.++..+..+++..+.+-. ....+. ..++.+...+.+ ++.++..|.+++.++..
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~---------nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~ 83 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPF---------NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV 83 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChh---------HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC
Confidence 456677777235689999999999999765432 222222 357777888876 78999999999988854
Q ss_pred hcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCC
Q 039062 487 GYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLS 566 (871)
Q Consensus 487 ~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~ 566 (871)
+.+. ...+..|+..+++.+... .+ +..++.+
T Consensus 84 ~~en---~~~Ik~~i~~Vc~~~~s~----~l-ns~~Q~a----------------------------------------- 114 (254)
T PF04826_consen 84 NDEN---QEQIKMYIPQVCEETVSS----PL-NSEVQLA----------------------------------------- 114 (254)
T ss_pred Chhh---HHHHHHHHHHHHHHHhcC----CC-CCHHHHH-----------------------------------------
Confidence 3221 122223333333222211 11 2223333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhh-
Q 039062 567 SDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKY- 645 (871)
Q Consensus 567 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~- 645 (871)
++..|..+.. ..+ ........++.++.+|..++..++..++.+|..++.. +...+.
T Consensus 115 -------------gLrlL~nLtv--~~~------~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n--p~~~~~L 171 (254)
T PF04826_consen 115 -------------GLRLLTNLTV--TND------YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN--PDMTREL 171 (254)
T ss_pred -------------HHHHHHccCC--Ccc------hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC--HHHHHHH
Confidence 3344444321 111 2222334455667777777777888888888888743 222222
Q ss_pred h-HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh
Q 039062 646 M-PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE 681 (871)
Q Consensus 646 l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 681 (871)
+ .+..+.++..+......++...++..++++.....
T Consensus 172 l~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 172 LSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred HhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 2 34566666666655556777888888888877765
No 135
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.48 E-value=0.008 Score=58.59 Aligned_cols=220 Identities=14% Similarity=0.132 Sum_probs=129.9
Q ss_pred HHhhhc-CCChhhHHHHHHHHHHhhcCCChhhhhHHH--HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCC
Q 039062 372 IEENIA-KPDWRQREAATYAFGSILEGPSPDKLLHIV--NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGT 448 (871)
Q Consensus 372 l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 448 (871)
+...+. +.++..++.++.+++..+... .-...+ -..++.+...+ .+|++.+|..|++++.+++....+
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~---~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~en----- 87 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFP---FNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDEN----- 87 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccCh---hHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChhh-----
Confidence 333444 467889999999998876532 222233 24688889999 999999999999999998876542
Q ss_pred CccchhhHHHHHHHHHHhccC---ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHH
Q 039062 449 PIITQANCQQIITVLLQSMKD---TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTA 525 (871)
Q Consensus 449 ~~~~~~~~~~il~~l~~~l~d---~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~ 525 (871)
...++..++.+.+.+.. +..++.++..+|.++.- .+.....+...++.++.++... +..+|..
T Consensus 88 ----~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-------~~~~~~~l~~~i~~ll~LL~~G---~~~~k~~ 153 (254)
T PF04826_consen 88 ----QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-------TNDYHHMLANYIPDLLSLLSSG---SEKTKVQ 153 (254)
T ss_pred ----HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-------CcchhhhHHhhHHHHHHHHHcC---ChHHHHH
Confidence 22334444444443332 56888888888888742 1222223334455555666655 3468888
Q ss_pred HHHHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCc-------
Q 039062 526 AYETLNEVVRSSTDETAPMV-LQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPT------- 597 (871)
Q Consensus 526 a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~------- 597 (871)
++.+|..+...... ....+ .+.++.++..++.. .+. ++...++..+.+|...+.++...
T Consensus 154 vLk~L~nLS~np~~-~~~Ll~~q~~~~~~~Lf~~~--------~~~----~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~ 220 (254)
T PF04826_consen 154 VLKVLVNLSENPDM-TRELLSAQVLSSFLSLFNSS--------ESK----ENLLRVLTFFENINENIKKEAYVFVQDDFS 220 (254)
T ss_pred HHHHHHHhccCHHH-HHHHHhccchhHHHHHHccC--------Ccc----HHHHHHHHHHHHHHHhhCcccceeccccCC
Confidence 99998888765331 11111 34555566666442 112 24445777778887777654210
Q ss_pred -hhhhhh--hHHHHHHHHHHHHcccCcchhhhH
Q 039062 598 -KYVFMQ--YADQIMGLFLRVFACRSATVHEEA 627 (871)
Q Consensus 598 -~~~~~~--~~~~i~~~l~~~l~~~~~~~~~~a 627 (871)
.+.+.- -...+-+.+..+..++|.+||+.+
T Consensus 221 ~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 221 EDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred chhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 011110 123445555666666666666543
No 136
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.47 E-value=0.15 Score=53.38 Aligned_cols=278 Identities=21% Similarity=0.194 Sum_probs=170.7
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 039062 37 SFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVI 116 (871)
Q Consensus 37 ~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l 116 (871)
.....+...+.++ +..+|..|+..++..= -....+.+...+.++++.+|..++.++
T Consensus 43 ~~~~~~~~~l~~~--~~~vr~~aa~~l~~~~----------------------~~~av~~l~~~l~d~~~~vr~~a~~aL 98 (335)
T COG1413 43 EAADELLKLLEDE--DLLVRLSAAVALGELG----------------------SEEAVPLLRELLSDEDPRVRDAAADAL 98 (335)
T ss_pred hhHHHHHHHHcCC--CHHHHHHHHHHHhhhc----------------------hHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3455566667764 7889988887764421 134556778899999999999998855
Q ss_pred HHHHhhhcCCCCchHHHHHHHHhhc-CCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCC---------
Q 039062 117 AKVAGIELPQKQWPELIVSLLSNVH-QLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNAS--------- 186 (871)
Q Consensus 117 ~~i~~~~~~~~~~~~ll~~L~~~l~-~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~--------- 186 (871)
+.+ .-++.++.+...+. +++..+|..+..+|+.+-..- . +..++..+..+
T Consensus 99 g~~--------~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~--------a----~~~l~~~l~~~~~~~a~~~~ 158 (335)
T COG1413 99 GEL--------GDPEAVPPLVELLENDENEGVRAAAARALGKLGDER--------A----LDPLLEALQDEDSGSAAAAL 158 (335)
T ss_pred Hcc--------CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh--------h----hHHHHHHhccchhhhhhhhc
Confidence 544 34666777777777 588899999999998764422 1 12233333311
Q ss_pred -CCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHH
Q 039062 187 -EMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSIT 265 (871)
Q Consensus 187 -~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~ 265 (871)
.....+|..+...+..+-. +.....+...+.+.+..+|..+...+..+.... ..+...+
T Consensus 159 ~~~~~~~r~~a~~~l~~~~~------------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l 218 (335)
T COG1413 159 DAALLDVRAAAAEALGELGD------------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLL 218 (335)
T ss_pred cchHHHHHHHHHHHHHHcCC------------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHH
Confidence 1223678888887776321 344556667777778899999999999887543 2344555
Q ss_pred HHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccH
Q 039062 266 AKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNI 345 (871)
Q Consensus 266 ~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~ 345 (871)
...+.+.+..+|..++..++.+... .. .+.+...+.. ++ |..
T Consensus 219 ~~~~~~~~~~vr~~~~~~l~~~~~~-------------------------~~----~~~l~~~l~~--~~-------~~~ 260 (335)
T COG1413 219 VKALSDESLEVRKAALLALGEIGDE-------------------------EA----VDALAKALED--ED-------VIL 260 (335)
T ss_pred HHHhcCCCHHHHHHHHHHhcccCcc-------------------------hh----HHHHHHHHhc--cc-------hHH
Confidence 5677888889998887776554221 11 2222222211 11 334
Q ss_pred hHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHH
Q 039062 346 AMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNH 425 (871)
Q Consensus 346 r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~ 425 (871)
+..+...+. ..-.......+...+.+.+|..|..+...++.+..... ....+... .+....
T Consensus 261 ~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~a~~~~~-~~~~~~ 321 (335)
T COG1413 261 ALLAAAALG-------ALDLAEAALPLLLLLIDEANAVRLEAALALGQIGQEKA-----------VAALLLAL-EDGDAD 321 (335)
T ss_pred HHHHHHHhc-------ccCchhhHHHHHHHhhcchhhHHHHHHHHHHhhcccch-----------HHHHHHHh-cCCchh
Confidence 333333332 11112233344556678889999999888888877642 12223344 666677
Q ss_pred HHHHHHHHHH
Q 039062 426 VKDTTAWTLG 435 (871)
Q Consensus 426 vr~~a~~~l~ 435 (871)
+|..+...+.
T Consensus 322 ~~~~~~~~~~ 331 (335)
T COG1413 322 VRKAALILLE 331 (335)
T ss_pred hHHHHHHHHH
Confidence 7766665543
No 137
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.46 E-value=0.068 Score=66.31 Aligned_cols=321 Identities=14% Similarity=0.139 Sum_probs=183.3
Q ss_pred CchH----HHHHHHHhhcCCChHHHHHHHHHHHHHhhccC-CCccch-hhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 039062 128 QWPE----LIVSLLSNVHQLPAHVKQATLETLGYLCEEVS-PDVVEQ-DHVNKILTAVVQGMNASEMNNDVRLAATRALY 201 (871)
Q Consensus 128 ~~~~----ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~-~~~~~~-~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~ 201 (871)
.|+. +-+.+.....+++..++..|+..|.+++..+- .+.+.. ..-..++..+...+.. ..+.++|...++|+.
T Consensus 1130 ~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~-s~~~eVrE~ILeCv~ 1208 (1780)
T PLN03076 1130 VWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRK-SNAVEIRELIIRCVS 1208 (1780)
T ss_pred ehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHh-cCchHHHHHHHHHHH
Confidence 5665 44444444445566788888888888776541 111211 2234566666666654 578899999999999
Q ss_pred HhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhH----HhHHHHHHHHHHHhhC-CChhH
Q 039062 202 NALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLA----PYMQDIYSITAKAVRE-DEEPV 276 (871)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~----~~~~~l~~~~~~~~~~-~~~~~ 276 (871)
+++........ .-|..++.++.....++++.+...|++.+..+++.+...+. ..+..++..+...... .+.++
T Consensus 1209 qmI~s~~~nIk--SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nI 1286 (1780)
T PLN03076 1209 QMVLSRVNNVK--SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDI 1286 (1780)
T ss_pred HHHHHHHhhhh--cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccc
Confidence 98865443332 24577888887777788899999999999988876554333 3444555544444433 34678
Q ss_pred HHHHHHHHHHHHHHHHhh-hh-----hhcCC-------C-CCCCCCchhhhHHhhhhhhHHHHHHH--HhcccCCccccc
Q 039062 277 ALQAIEFWSSICDEEIDI-LE-----EYGSD-------F-TGNSDIPCFYFIKQALPALVPLLLEI--LLKQEEDQDQEE 340 (871)
Q Consensus 277 ~~~a~~~~~~l~~~~~~~-~~-----~~~~~-------~-~~~~~~~~~~~~~~~~~~l~~~l~~~--l~~~~~d~~~~~ 340 (871)
...|++++..++..-.+. .. +.... . .+........-......-.+|.|... +.. +++
T Consensus 1287 SL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~-D~R----- 1360 (1780)
T PLN03076 1287 SLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSF-DPR----- 1360 (1780)
T ss_pred cHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhc-CCc-----
Confidence 888888776554432110 00 00000 0 00000000000001112234444332 111 122
Q ss_pred ccccHhHHHHHHHHHHHHHcCCCccc---------chHHHHHhhh---c--------------C------CChhhHHHHH
Q 039062 341 GAWNIAMAGGTCLGLVARTVGDDIVP---------LVIPFIEENI---A--------------K------PDWRQREAAT 388 (871)
Q Consensus 341 ~~~~~r~~a~~~l~~l~~~~~~~~~~---------~l~~~l~~~l---~--------------~------~~~~~r~~a~ 388 (871)
-.+|..|...|-.+...+|..+-+ .++|.+...- . + ..|- .++..
T Consensus 1361 --lEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl-~eT~~ 1437 (1780)
T PLN03076 1361 --PEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL-YETCT 1437 (1780)
T ss_pred --HHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH-HHHHH
Confidence 268999999988888877765432 3444433210 0 0 1243 45556
Q ss_pred HHHHHhhcCCC--hhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHh
Q 039062 389 YAFGSILEGPS--PDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQS 466 (871)
Q Consensus 389 ~~l~~l~~~~~--~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 466 (871)
.++..+++-.. .+.+...++.++..+..++ ..++..+-..+..|+.++...... .+.++....++..+.+.
T Consensus 1438 ~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci-~q~n~~la~ig~~~l~~li~~ng~------~F~~~~W~~i~~~~~~l 1510 (1780)
T PLN03076 1438 LALQLVVDLFVKFYPTVNPLLKKVLMLLVSFI-KRPHQSLAGIGIAAFVRLMSNAGH------LFSDEKWLEVVLSLKEA 1510 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHhhc------cCCHHHHHHHHHHHHHH
Confidence 66666655431 3455566777888888888 888888888888888888877652 44555555555555444
Q ss_pred c
Q 039062 467 M 467 (871)
Q Consensus 467 l 467 (871)
+
T Consensus 1511 f 1511 (1780)
T PLN03076 1511 A 1511 (1780)
T ss_pred H
Confidence 3
No 138
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.46 E-value=0.0017 Score=58.40 Aligned_cols=91 Identities=15% Similarity=0.205 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHcccCcchhhhHHHHHHHHHHH-hhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHH---HHHh
Q 039062 605 ADQIMGLFLRVFACRSATVHEEAMLAIGALAYA-AGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDI---CRAL 680 (871)
Q Consensus 605 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l---~~~~ 680 (871)
++..++.+..-+...+.+.+--|...+..++.. .++.+.|.++++++.+..++... +.++...++.+|..+ ...+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhh
Confidence 346677777777777777888888899999888 77889999999999999999755 559999999999999 6677
Q ss_pred hhcccccHHHHHHHHH
Q 039062 681 EEKILPYCDGIMTQLL 696 (871)
Q Consensus 681 ~~~~~~~~~~i~~~l~ 696 (871)
|+.+.||..++++.+-
T Consensus 115 G~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLN 130 (183)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 8999999999999875
No 139
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.45 E-value=0.011 Score=54.82 Aligned_cols=108 Identities=12% Similarity=0.138 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCc-hH
Q 039062 53 VDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQW-PE 131 (871)
Q Consensus 53 ~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~-~~ 131 (871)
+.+|..+.+.+..+..++ +...+...+.+...|.|+++.||..+..+++.+...++- .| +.
T Consensus 2 ~~vR~n~i~~l~DL~~r~----------------~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i--k~k~~ 63 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRY----------------PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI--KVKGQ 63 (178)
T ss_pred HHHHHHHHHHHHHHHHhC----------------cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce--eehhh
Confidence 678888888887765432 223345667888999999999999999999999887644 44 55
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 039062 132 LIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAV 179 (871)
Q Consensus 132 ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l 179 (871)
++..+..++.++++.+|..|..+|..+.....+..+ ...+..++..+
T Consensus 64 l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i-~~~~~e~i~~l 110 (178)
T PF12717_consen 64 LFSRILKLLVDENPEIRSLARSFFSELLKKRNPNII-YNNFPELISSL 110 (178)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHHH
Confidence 668888999999999999999999998887424444 34444444333
No 140
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.42 E-value=0.051 Score=57.28 Aligned_cols=242 Identities=12% Similarity=-0.003 Sum_probs=148.9
Q ss_pred hHHHHHHHHhhc-CCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcch
Q 039062 130 PELIVSLLSNVH-QLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQ 208 (871)
Q Consensus 130 ~~ll~~L~~~l~-~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 208 (871)
+..++.+...+. +++..++..+...+... . . ...+..++..+. +.+..||..+.++|+.+-
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~---~------~---~~~~~~L~~~L~--d~~~~vr~aaa~ALg~i~---- 114 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ---E------D---ALDLRSVLAVLQ--AGPEGLCAGIQAALGWLG---- 114 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc---C------C---hHHHHHHHHHhc--CCCHHHHHHHHHHHhcCC----
Confidence 455666666663 45566665555444311 0 1 112566777777 788899999999998631
Q ss_pred hcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHH
Q 039062 209 ANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSIC 288 (871)
Q Consensus 209 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~ 288 (871)
.+.....+...+.++++.+|..++..+...-.. -.+.+...+++.++.++..|+..++.+.
T Consensus 115 --------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-----------~~~~L~~~L~d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 115 --------GRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-----------PGPALEAALTHEDALVRAAALRALGELP 175 (410)
T ss_pred --------chHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-----------hHHHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence 145667778888889999998888766652111 1223344677899999999999887764
Q ss_pred HHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccch
Q 039062 289 DEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLV 368 (871)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l 368 (871)
... .+|.|...+ .+.+ -.+|.+|..++..+.. +..
T Consensus 176 ~~~-----------------------------a~~~L~~al--~d~~-------~~VR~aA~~al~~lG~-------~~A 210 (410)
T TIGR02270 176 RRL-----------------------------SESTLRLYL--RDSD-------PEVRFAALEAGLLAGS-------RLA 210 (410)
T ss_pred ccc-----------------------------chHHHHHHH--cCCC-------HHHHHHHHHHHHHcCC-------HhH
Confidence 421 122232222 2222 2689888888855532 223
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCC
Q 039062 369 IPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGT 448 (871)
Q Consensus 369 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 448 (871)
.+.+......+.+..+.....++... -. +..++.+...+ +|+. +|..+++++|.+..
T Consensus 211 ~~~l~~~~~~~g~~~~~~l~~~lal~---~~--------~~a~~~L~~ll-~d~~--vr~~a~~AlG~lg~--------- 267 (410)
T TIGR02270 211 WGVCRRFQVLEGGPHRQRLLVLLAVA---GG--------PDAQAWLRELL-QAAA--TRREALRAVGLVGD--------- 267 (410)
T ss_pred HHHHHHHHhccCccHHHHHHHHHHhC---Cc--------hhHHHHHHHHh-cChh--hHHHHHHHHHHcCC---------
Confidence 33344433444455554444344333 11 14567777888 7765 99999999997643
Q ss_pred CccchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Q 039062 449 PIITQANCQQIITVLLQSMKDTPNVAEKACGALYFLA 485 (871)
Q Consensus 449 ~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~~l~~l~ 485 (871)
+..++.|++.+.|.+ ++..|-.++..+.
T Consensus 268 --------p~av~~L~~~l~d~~-~aR~A~eA~~~It 295 (410)
T TIGR02270 268 --------VEAAPWCLEAMREPP-WARLAGEAFSLIT 295 (410)
T ss_pred --------cchHHHHHHHhcCcH-HHHHHHHHHHHhh
Confidence 246778888887655 7777888877764
No 141
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.41 E-value=0.00019 Score=62.17 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhH-hHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhccc
Q 039062 607 QIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMP-DFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKIL 685 (871)
Q Consensus 607 ~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~ 685 (871)
.+++.+..++.+.+..++..++.+++.++.........++. .++|.+...+.++ +..++..++++++.++...+....
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcHHHHH
Confidence 36778888888888899999999999999765444444454 7888888888765 569999999999999876543222
Q ss_pred ccH-HHHHHHHHHHccCCCCCCcCCchHHHHHHHHH
Q 039062 686 PYC-DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIA 720 (871)
Q Consensus 686 ~~~-~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~ 720 (871)
... .++++.+.+.+++. +..++..++.++.+++
T Consensus 86 ~~~~~g~l~~l~~~l~~~--~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSS--NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcC--CHHHHHHHHHHHHHhh
Confidence 222 35788888888877 6788999999998875
No 142
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.41 E-value=0.0065 Score=55.27 Aligned_cols=136 Identities=10% Similarity=0.052 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhh-hhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh
Q 039062 603 QYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAG-LDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE 681 (871)
Q Consensus 603 ~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 681 (871)
.....++..+..++++++..-|-.++..++.++...+ +-|..+....+..++..++..+...+...++.++..+.....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3567788889999999888889999999999999885 455588889999999999988888899999999999988764
Q ss_pred -------hcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHH
Q 039062 682 -------EKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAA 742 (871)
Q Consensus 682 -------~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l 742 (871)
+...|.++.+++.+++.++. ......++.++..+...++.-|.||..++-..+...+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD----SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 34578889999999998774 3466789999999999999999999998877666543
No 143
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.38 E-value=0.048 Score=55.40 Aligned_cols=195 Identities=12% Similarity=0.143 Sum_probs=128.8
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHHhhhc-C---CCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhh
Q 039062 96 CLLNTLTSTVADARSTSSQVIAKVAGIEL-P---QKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDH 171 (871)
Q Consensus 96 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~~-~---~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 171 (871)
..+..+.+.....|..+-..+..+....+ + ...+..+++.+...+..++...+..|+++++-++-.+.+..-....
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 34445566667888777666666654432 2 1355778899999998877666777888888777665211111456
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhh--c----------cCcHHHHHHH
Q 039062 172 VNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEAT--Q----------SAELKIRQAA 239 (871)
Q Consensus 172 ~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l--~----------~~~~~~~~~a 239 (871)
+..+.|.+...+.....++.+|.+++.+|+-+.-+...........-..++.++... + .+++.+..+|
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 777888888888854556788999999988876443322211110113344333321 1 1246799999
Q ss_pred HHHHHHHHHHhHH-hhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHH
Q 039062 240 FECLVSISSTYYE-KLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDE 290 (871)
Q Consensus 240 ~~~l~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~ 290 (871)
+..|+-++...+. .+...+...++.+...+.+.+.++|..|-+.+..+.+.
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999988877655 34555666777788888999999999999888777554
No 144
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.37 E-value=0.00034 Score=42.73 Aligned_cols=30 Identities=37% Similarity=0.540 Sum_probs=26.7
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHhhh
Q 039062 410 ALSFMLSALTKDPNNHVKDTTAWTLGRIFEF 440 (871)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~ 440 (871)
++|.+++.+ +|++++||.+|+++++.+++.
T Consensus 1 llp~l~~~l-~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLL-NDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHH-T-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHc-CCCCHHHHHHHHHHHHHHHhh
Confidence 578899999 999999999999999999875
No 145
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.36 E-value=0.5 Score=54.86 Aligned_cols=158 Identities=12% Similarity=0.202 Sum_probs=113.9
Q ss_pred CCch--HHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHH-----hhhc---CCCCCHHHHHHH
Q 039062 127 KQWP--ELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVV-----QGMN---ASEMNNDVRLAA 196 (871)
Q Consensus 127 ~~~~--~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~-----~~l~---~~~~~~~vr~~a 196 (871)
..|| .++..|.+.+-+++++.|+++-.++..+.+.. .+..+....+.++..++ ..+. ++.--..||.++
T Consensus 71 ~~w~f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h-~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~c 149 (1549)
T KOG0392|consen 71 RQWPFLSFLEELVNDLFEPQWEIRHGAAIALREILKTH-GDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREAC 149 (1549)
T ss_pred ccccHHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHH
Confidence 5775 58899999999999999999999999888876 44444444444443332 1222 112345799999
Q ss_pred HHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhH
Q 039062 197 TRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPV 276 (871)
Q Consensus 197 l~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 276 (871)
.++|..++.+... ......++++.+.+..+.+++|...+..+...+..+.+.+...+..+++.++..+.+.+.++
T Consensus 150 aq~L~~~l~~~~~-----s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv 224 (1549)
T KOG0392|consen 150 AQALGAYLKHMDE-----SLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDV 224 (1549)
T ss_pred HHHHHHHHHhhhh-----HhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHH
Confidence 9999997765432 22356777777777777899998888888777766666666666678888888999999999
Q ss_pred HHHHHHHHHHHHHH
Q 039062 277 ALQAIEFWSSICDE 290 (871)
Q Consensus 277 ~~~a~~~~~~l~~~ 290 (871)
+..|..++..+...
T Consensus 225 ~~~aa~~l~~~~s~ 238 (1549)
T KOG0392|consen 225 RSVAAQFLVPAPSI 238 (1549)
T ss_pred HHHHHHHhhhhhHH
Confidence 98888887766554
No 146
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.29 Score=51.75 Aligned_cols=243 Identities=13% Similarity=0.114 Sum_probs=149.7
Q ss_pred HHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhh-----hhhhh---HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHH
Q 039062 607 QIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLD-----FAKYM---PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICR 678 (871)
Q Consensus 607 ~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~-----~~~~l---~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 678 (871)
+++..+++.++ +....+.|..++..+....... +.+.+ +.+++...+.....++.+-+.+.+..+..++.
T Consensus 199 pLi~l~F~sl~--~~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~e 276 (559)
T KOG2081|consen 199 PLITLAFRSLS--DDELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGE 276 (559)
T ss_pred HHHHHHHHHcc--cchhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHH
Confidence 56677777776 5667888888888877665421 22222 23455544444444555655555666665555
Q ss_pred Hhhhcc---cccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhc--------cChHHhHHHHHHHHHHHHhhccc
Q 039062 679 ALEEKI---LPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG--------ENFEKYLMYAMPMLQSAADLSAH 747 (871)
Q Consensus 679 ~~~~~~---~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~--------~~~~~~~~~i~~~l~~~l~~~~~ 747 (871)
..-..+ ..+.-.++..++-.-..+ +.++-+..+..-..+...+- .-|.||..+++..+....+..++
T Consensus 277 af~~~i~~np~~~l~~vellLl~~~h~--~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~ 354 (559)
T KOG2081|consen 277 AFVVLISTNPEEFLRIVELLLLVAGHN--DTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPD 354 (559)
T ss_pred HHHHHHhhCCCcchhHHHHHHHhccCC--chhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCc
Confidence 443111 112234444444444444 45676776766666554432 24789999999999998887653
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcc
Q 039062 748 TANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGS 827 (871)
Q Consensus 748 ~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~ 827 (871)
.+.--||..+ ....|..+.+.+.....-+|++ ..++.+...++.++.+.+..++++-++..+++.+..
T Consensus 355 ~~~l~Ee~~~-f~~fR~~v~dvl~Dv~~iigs~-----------e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~ 422 (559)
T KOG2081|consen 355 QFDLPEEESE-FFEFRLKVGDVLKDVAFIIGSD-----------ECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSP 422 (559)
T ss_pred cccCccchhH-HHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCc
Confidence 2211111112 3566777777777766666554 344444444444567899999999999999999887
Q ss_pred cccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHhc
Q 039062 828 NAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINKAIS 870 (871)
Q Consensus 828 ~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (871)
+-.+-+|. |.+++..+-. -.++|.++.--+|.+.+.+.
T Consensus 423 ~e~~i~pe---vl~~i~nlp~--Q~~~~~ts~ll~g~~~ew~~ 460 (559)
T KOG2081|consen 423 EENTIMPE---VLKLICNLPE--QAPLRYTSILLLGEYSEWVE 460 (559)
T ss_pred cccchHHH---HHHHHhCCcc--chhHHHHHHHHHHHHHHHHH
Confidence 77777776 5555555543 34599999988888887764
No 147
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.64 Score=55.69 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=85.5
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhc
Q 039062 220 IMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYG 299 (871)
Q Consensus 220 i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~ 299 (871)
+++-+-.-+..++.++|..|...++.+.......+..--+.+...++..+.+...++|..++++.....-..
T Consensus 260 vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~-------- 331 (1266)
T KOG1525|consen 260 VIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNN-------- 331 (1266)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcC--------
Confidence 344444456677899999999999999988766666555567777777888999999999888755432211
Q ss_pred CCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCC
Q 039062 300 SDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKP 379 (871)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~ 379 (871)
+...+. ... ...+...+-|+++ ++|....-..-.... +.-.+.+.++.++.+++.+.
T Consensus 332 -----------~~~~~~----~~~--~~~l~~~~~D~~~-----rir~~v~i~~~~v~~-~~l~~~~~ll~~~~eR~rDK 388 (1266)
T KOG1525|consen 332 -----------PSIAKA----STI--LLALRERDLDEDV-----RVRTQVVIVACDVMK-FKLVYIPLLLKLVAERLRDK 388 (1266)
T ss_pred -----------chhhhH----HHH--HHHHHhhcCChhh-----hheeeEEEEEeehhH-hhhhhhHHHHHHHHHHHhhh
Confidence 011111 000 1111112222211 222110000000000 00112233788888999999
Q ss_pred ChhhHHHHHHHHHHhhcC
Q 039062 380 DWRQREAATYAFGSILEG 397 (871)
Q Consensus 380 ~~~~r~~a~~~l~~l~~~ 397 (871)
.|++|.-|+.-+..+...
T Consensus 389 k~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 389 KIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999999988888763
No 148
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.32 E-value=0.32 Score=52.70 Aligned_cols=312 Identities=14% Similarity=0.157 Sum_probs=151.5
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcC
Q 039062 221 MRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGS 300 (871)
Q Consensus 221 ~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~ 300 (871)
...++.... .+.+.+.-|.+.+..+.+.+|+.-..-++.+++ ...+++..+|..|+.-+..+|...
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~D----LcEDed~~iR~~aik~lp~~ck~~--------- 90 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLD----LCEDEDVQIRKQAIKGLPQLCKDN--------- 90 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHH----HHT-SSHHHHHHHHHHGGGG--T----------
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH----HHhcccHHHHHHHHHhHHHHHHhH---------
Confidence 334445555 468889999999888887777766665555555 668999999999999999988752
Q ss_pred CCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCC
Q 039062 301 DFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPD 380 (871)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~ 380 (871)
..+++.+..+|.+.|.. ||. ......-.+|..+...-+...+..++..+... .+.+
T Consensus 91 --------------~~~v~kvaDvL~QlL~t--dd~-------~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~d 146 (556)
T PF05918_consen 91 --------------PEHVSKVADVLVQLLQT--DDP-------VELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGD 146 (556)
T ss_dssp ---------------T-HHHHHHHHHHHTT-----H-------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-
T ss_pred --------------HHHHhHHHHHHHHHHhc--ccH-------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCc
Confidence 23455678888887763 222 22333445666665554444444444444321 1334
Q ss_pred hhhHHHHHHHHHHhhcCCChhhhh--HHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHH
Q 039062 381 WRQREAATYAFGSILEGPSPDKLL--HIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQ 457 (871)
Q Consensus 381 ~~~r~~a~~~l~~l~~~~~~~~~~--~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 457 (871)
-.+|+-++..+..=......+.+. ..+ ..++..+.+.| .|-.. .-+..+-.+...+.--. ......-..
T Consensus 147 e~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL-~DVTa----eEF~l~m~lL~~lk~~~---~~~t~~g~q 218 (556)
T PF05918_consen 147 EQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVL-QDVTA----EEFELFMSLLKSLKIYG---GKQTIEGRQ 218 (556)
T ss_dssp HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHC-TT--H----HHHHHHHHHHHTSGG------GSSHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHH-HhccH----HHHHHHHHHHHhCcccc---ccCChHHHH
Confidence 567888776664433332223333 223 33455666677 66322 22222223333322000 011233445
Q ss_pred HHHHHHHHhcc-C------ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHH
Q 039062 458 QIITVLLQSMK-D------TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETL 530 (871)
Q Consensus 458 ~il~~l~~~l~-d------~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l 530 (871)
.+++.+.+... + ++....+...|+..-..-+.. .-.-..++.-++..++..+.+-+ ...|...+.++
T Consensus 219 eLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~---~v~Sskfv~y~~~kvlP~l~~l~---e~~kl~lLk~l 292 (556)
T PF05918_consen 219 ELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSR---GVSSSKFVNYMCEKVLPKLSDLP---EDRKLDLLKLL 292 (556)
T ss_dssp HHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BT---TB--HHHHHHHHHHTCCCTT--------HHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcC---CCChHHHHHHHHHHhcCChhhCC---hHHHHHHHHHH
Confidence 56666665442 1 123333344444332222222 22234566666666666555542 24566788888
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 039062 531 NEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSS 594 (871)
Q Consensus 531 ~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 594 (871)
..++..++..- ..++++.+.+.+..++.. +...+.+....++|+-.....++..
T Consensus 293 AE~s~~~~~~d---~~~~L~~i~~~L~~ymP~-------~~~~~~l~fs~vEcLL~afh~La~k 346 (556)
T PF05918_consen 293 AELSPFCGAQD---ARQLLPSIFQLLKKYMPS-------KKTEPKLQFSYVECLLYAFHQLARK 346 (556)
T ss_dssp HHHHTT----T---HHHHHHHHHHHHHTTS-----------------HHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCccc---HHHHHHHHHHHHHHhCCC-------CCCCCcccchHhhHHHHHHHHHhhh
Confidence 88888877321 456667777777665421 1111234444556655555454443
No 149
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.26 E-value=0.51 Score=52.93 Aligned_cols=140 Identities=10% Similarity=0.197 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHccc-CcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHH
Q 039062 576 LQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACR-SATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLE 654 (871)
Q Consensus 576 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~ 654 (871)
++....-++..++-.-+ ..+...+|.+.+-|+.+ ...+|.....+++.++..... .++.-+|.+.
T Consensus 947 vra~~vvTlakmcLah~----------~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa----m~d~YiP~I~ 1012 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHD----------RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA----MTDRYIPMIA 1012 (1529)
T ss_pred HHHHHHHHHHHHHhhhh----------HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH----HHHHhhHHHH
Confidence 55555566666654322 34556777777777764 335788888888888865543 3455567777
Q ss_pred hhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChH--HhHH
Q 039062 655 MGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFE--KYLM 732 (871)
Q Consensus 655 ~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~--~~~~ 732 (871)
..|.|+. .-+|..++..|..+.+. ++..|-+.++-.++-.+-+. +..+|..+=.+++.+...-.+.|. .|++
T Consensus 1013 ~~L~Dp~-~iVRrqt~ilL~rLLq~---~~vKw~G~Lf~Rf~l~l~D~--~edIr~~a~f~~~~vL~~~~P~~f~~~FVe 1086 (1529)
T KOG0413|consen 1013 ASLCDPS-VIVRRQTIILLARLLQF---GIVKWNGELFIRFMLALLDA--NEDIRNDAKFYISEVLQSEEPNFFPLNFVE 1086 (1529)
T ss_pred HHhcCch-HHHHHHHHHHHHHHHhh---hhhhcchhhHHHHHHHHccc--CHHHHHHHHHHHHHHHhhcCccchHHHHHH
Confidence 7888764 47999999999888663 45555565555544444444 578999999999999887666544 3455
Q ss_pred HHH
Q 039062 733 YAM 735 (871)
Q Consensus 733 ~i~ 735 (871)
.++
T Consensus 1087 ~i~ 1089 (1529)
T KOG0413|consen 1087 YII 1089 (1529)
T ss_pred HHH
Confidence 443
No 150
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=97.22 E-value=0.027 Score=59.94 Aligned_cols=266 Identities=14% Similarity=0.147 Sum_probs=149.1
Q ss_pred hcCCChhhHHHHHHHHHHhhcCCChhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchh
Q 039062 376 IAKPDWRQREAATYAFGSILEGPSPDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQA 454 (871)
Q Consensus 376 l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 454 (871)
..+++|..-......|..+......+....++ ..++..++..+ +.++|+-|......+.++...+. .....
T Consensus 99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~-~S~D~rER~~lk~~l~~iy~k~~-------~~r~~ 170 (409)
T PF01603_consen 99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELF-DSPDPRERDYLKTILHRIYGKFP-------NLRSF 170 (409)
T ss_dssp ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTT-TSSTHHHHHHHHHHHHHHHHH-T-------TTHHH
T ss_pred ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhh-------hhHHH
Confidence 34567887777777887777764322233344 36778889999 99999999999999888776654 22333
Q ss_pred hHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHhhcccCCCCCCCcc-hHHHHHHHHHHhhccCChhhhhHHHHHHHHHH
Q 039062 455 NCQQIITVLLQSMKD--TPNVAEKACGALYFLAQGYEDVGPSSPLTP-FFQEIVQSLLTVTHREDAGESRLRTAAYETLN 531 (871)
Q Consensus 455 ~~~~il~~l~~~l~d--~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~-~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~ 531 (871)
....+-..+.+.+.+ .+.-.......++.+..++. -.+.+ +..-+...++.+.+... -.........|+.
T Consensus 171 Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~-----~plk~eh~~fl~~vllPLh~~~~--~~~y~~~L~~~~~ 243 (409)
T PF01603_consen 171 IRKSINNIFYRFIYETERHNGIAELLEILGSIINGFA-----VPLKEEHKQFLRKVLLPLHKSPH--LSSYHQQLSYCVV 243 (409)
T ss_dssp HHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT-------SS--HHHHHHHHHTTGGGGGSTG--GGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC-----CCCcHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHH
Confidence 333444444555443 23334455566666665432 22333 33333333444443332 2233456666777
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHH
Q 039062 532 EVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGL 611 (871)
Q Consensus 532 ~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~ 611 (871)
.++..-+. ....++..++..|-.. ++. -....+.-+..+...+++. .+.+...+++..
T Consensus 244 ~f~~kdp~----l~~~~i~~llk~WP~t---------~s~----Kev~FL~el~~il~~~~~~-----~f~~i~~~lf~~ 301 (409)
T PF01603_consen 244 QFLEKDPS----LAEPVIKGLLKHWPKT---------NSQ----KEVLFLNELEEILEVLPPE-----EFQKIMVPLFKR 301 (409)
T ss_dssp HHHHH-GG----GHHHHHHHHHHHS-SS----------HH----HHHHHHHHHHHHHTT--HH-----HHHHHHHHHHHH
T ss_pred HHHHhCch----hHHHHHHHHHHhCCCC---------Cch----hHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHH
Confidence 77665443 3344445555555322 111 1112445555555544432 378888999999
Q ss_pred HHHHHcccCcchhhhHHHHHHHH--HHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHH
Q 039062 612 FLRVFACRSATVHEEAMLAIGAL--AYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICR 678 (871)
Q Consensus 612 l~~~l~~~~~~~~~~a~~~l~~l--~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 678 (871)
+..++++.+..|-+.|+..|..= +......-...++.++|.+.+..++.-+..++..|..++..+..
T Consensus 302 la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 302 LAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999998776542 33333333334455555555555545455788888888876644
No 151
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.21 E-value=0.0068 Score=55.13 Aligned_cols=137 Identities=15% Similarity=0.118 Sum_probs=106.2
Q ss_pred CchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcc
Q 039062 128 QWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFA 207 (871)
Q Consensus 128 ~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 207 (871)
.++.+...+...+++.++..|-.|+..++.+++..+++.+ ..+....+..++..++. ..+..++..++.++..++.+.
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l-~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEIL-LSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHh
Confidence 4566777788888888899999999999999998756666 67778888899999987 566788999999999998765
Q ss_pred hhcccC-hh----hHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHH
Q 039062 208 QANFSN-DM----ERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKA 268 (871)
Q Consensus 208 ~~~~~~-~~----~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 268 (871)
.+..+. .+ ..+.+++.+.+.+++ ......+++++..++..+|..+.|+..++-..+...
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 433221 11 124566777776664 567889999999999999999999988876665544
No 152
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.21 E-value=0.092 Score=55.03 Aligned_cols=247 Identities=22% Similarity=0.236 Sum_probs=150.7
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchh
Q 039062 130 PELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQA 209 (871)
Q Consensus 130 ~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 209 (871)
+...+.+.+.+.+++..+|..+...++.+ .....++.+...+. +.++.+|..|..+++.+-.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~------------~~~~av~~l~~~l~--d~~~~vr~~a~~aLg~~~~---- 103 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGEL------------GSEEAVPLLRELLS--DEDPRVRDAAADALGELGD---- 103 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhh------------chHHHHHHHHHHhc--CCCHHHHHHHHHHHHccCC----
Confidence 46678888888888888999888886542 23445667777887 8899999999998877321
Q ss_pred cccChhhHHHHHHHHHHhhc-cCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCCh------------hH
Q 039062 210 NFSNDMERDYIMRVVCEATQ-SAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEE------------PV 276 (871)
Q Consensus 210 ~~~~~~~~~~i~~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------~~ 276 (871)
+..++.+...+. +++..+|..+...|..+-.... +..++. .+.+... .+
T Consensus 104 --------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a------~~~l~~----~l~~~~~~~a~~~~~~~~~~~ 165 (335)
T COG1413 104 --------PEAVPPLVELLENDENEGVRAAAARALGKLGDERA------LDPLLE----ALQDEDSGSAAAALDAALLDV 165 (335)
T ss_pred --------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh------hHHHHH----HhccchhhhhhhhccchHHHH
Confidence 334445555555 6899999999999998765422 222333 3333221 23
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHH
Q 039062 277 ALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLV 356 (871)
Q Consensus 277 ~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l 356 (871)
+..+...+..+.. +...+.+...+.. .+ ..+|.+|..+|+.+
T Consensus 166 r~~a~~~l~~~~~-----------------------------~~~~~~l~~~l~~----~~-----~~vr~~Aa~aL~~~ 207 (335)
T COG1413 166 RAAAAEALGELGD-----------------------------PEAIPLLIELLED----ED-----ADVRRAAASALGQL 207 (335)
T ss_pred HHHHHHHHHHcCC-----------------------------hhhhHHHHHHHhC----ch-----HHHHHHHHHHHHHh
Confidence 4444443333322 1123333333321 11 26888888888777
Q ss_pred HHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 039062 357 ARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGR 436 (871)
Q Consensus 357 ~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~ 436 (871)
.... ..+.+.+...+.+++|.+|..++..++.+.... ..+.+...+ .+.++.++..+...++.
T Consensus 208 ~~~~-----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~-----------~~~~l~~~l-~~~~~~~~~~~~~~~~~ 270 (335)
T COG1413 208 GSEN-----VEAADLLVKALSDESLEVRKAALLALGEIGDEE-----------AVDALAKAL-EDEDVILALLAAAALGA 270 (335)
T ss_pred hcch-----hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcch-----------hHHHHHHHH-hccchHHHHHHHHHhcc
Confidence 6543 355566777888999999999888887765532 234455666 77777776666555441
Q ss_pred HhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHH
Q 039062 437 IFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFL 484 (871)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l 484 (871)
. . ...-...+...+.+ .+.++..+..++..+
T Consensus 271 ~---~--------------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 302 (335)
T COG1413 271 L---D--------------LAEAALPLLLLLIDEANAVRLEAALALGQI 302 (335)
T ss_pred c---C--------------chhhHHHHHHHhhcchhhHHHHHHHHHHhh
Confidence 1 0 01222233333334 677777777777665
No 153
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.28 Score=53.84 Aligned_cols=335 Identities=12% Similarity=0.107 Sum_probs=189.8
Q ss_pred HHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHH
Q 039062 503 EIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCG 582 (871)
Q Consensus 503 ~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (871)
+-++.|++...+... ..=|..|+.+|..+.+.... .....=|+++++.++.- -.|+ ++...+++
T Consensus 22 ETI~kLcDRvessTL--~eDRR~A~rgLKa~srkYR~---~Vga~Gmk~li~vL~~D-------~~D~----E~ik~~Ld 85 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTL--LEDRRDAVRGLKAFSRKYRE---EVGAQGMKPLIQVLQRD-------YMDP----EIIKYALD 85 (970)
T ss_pred hHHHHHHHHHhhccc--hhhHHHHHHHHHHHHHHHHH---HHHHcccHHHHHHHhhc-------cCCH----HHHHHHHH
Confidence 334444444443331 23367888888888887653 22344566666666542 1222 34455666
Q ss_pred HHHHHHHHhCC----CCCc-hhhhhhh-H------HHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhh---hH
Q 039062 583 CLQVIIQKLGS----SEPT-KYVFMQY-A------DQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKY---MP 647 (871)
Q Consensus 583 ~l~~l~~~~~~----~~~~-~~~~~~~-~------~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~---l~ 647 (871)
++-.+...=.. ++++ .+.+.-. + +..+..++..+...|..||.+++..++++..+-|...... .|
T Consensus 86 Tl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P 165 (970)
T KOG0946|consen 86 TLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSP 165 (970)
T ss_pred HHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCc
Confidence 65555443210 0111 1111111 1 3456778888888899999999999999999988766543 36
Q ss_pred hHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh--hcccccHHHHHHHHHHHccCCC-CCC-cCCchHHHHHHHHHHhh
Q 039062 648 DFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE--EKILPYCDGIMTQLLKDLSSNQ-LHR-SVKPPIFSCFGDIALAI 723 (871)
Q Consensus 648 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~~-~~~-~v~~~~~~~l~~i~~~~ 723 (871)
.-+..+...+.|..+ .+|..++-+|..+.+..+ ..+.. +.+++..|+.++.... .+. -|-..++..+-.+.+..
T Consensus 166 ~gIS~lmdlL~DsrE-~IRNe~iLlL~eL~k~n~~IQKlVA-FENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 166 MGISKLMDLLRDSRE-PIRNEAILLLSELVKDNSSIQKLVA-FENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred hhHHHHHHHHhhhhh-hhchhHHHHHHHHHccCchHHHHHH-HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 777778888877655 689999999999988765 22222 4788888888887663 222 35566777777777665
Q ss_pred ccC--hH---HhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccc-----c-chHH
Q 039062 724 GEN--FE---KYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLI-----P-YAPH 792 (871)
Q Consensus 724 ~~~--~~---~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~-----~-~~~~ 792 (871)
.++ |. .|++.+...+.-..-. |+|...+ ..-|-..+.++..++..+-......... - .-..
T Consensus 244 ~SNQ~~FrE~~~i~rL~klL~~f~~~-------d~Ev~~W-~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ 315 (970)
T KOG0946|consen 244 ISNQNFFREGSYIPRLLKLLSVFEFG-------DGEVFGW-STQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSH 315 (970)
T ss_pred cchhhHHhccccHHHHHhhcCccccc-------Ccccccc-cHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcc
Confidence 432 22 3555544333221111 2221222 1223333333434444432220111110 0 1125
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHh-------cccccccccc--hHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 039062 793 ILQFLDSMYMEKDMDELVMKTAIGLLGDLADTL-------GSNAGSLIQQ--SLTSKDFLNECLSSKDHMIKESAEWARL 863 (871)
Q Consensus 793 i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~-------~~~~~~~l~~--~~~v~~~l~~~~~~~~~~~~~~~~~~~~ 863 (871)
++..++.++..+....+++.-++.+.+.+++.. ++-..|+.++ ...|.-++....+.-....|=++.|-++
T Consensus 316 ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~ 395 (970)
T KOG0946|consen 316 LLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFR 395 (970)
T ss_pred hHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHH
Confidence 778888888765578889999999999988743 3344466663 1123333444443455677777766554
No 154
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.18 E-value=0.76 Score=53.19 Aligned_cols=109 Identities=15% Similarity=0.200 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHcc----cCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHh
Q 039062 605 ADQIMGLFLRVFAC----RSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRAL 680 (871)
Q Consensus 605 ~~~i~~~l~~~l~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 680 (871)
+..+.|.+...... +++.++.+|..+++++.-... .|+..-+|.++..+.....+.+|.+++-.+|+++-.+
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 44455555555543 367799999999999875443 3556666777777776777899999999999998887
Q ss_pred hhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhh
Q 039062 681 EEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAI 723 (871)
Q Consensus 681 ~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~ 723 (871)
+.-+.| +.+.|...+.++ +..+|..|+..++.+..+-
T Consensus 993 pnlie~----~T~~Ly~rL~D~--~~~vRkta~lvlshLILnd 1029 (1251)
T KOG0414|consen 993 PNLIEP----WTEHLYRRLRDE--SPSVRKTALLVLSHLILND 1029 (1251)
T ss_pred ccccch----hhHHHHHHhcCc--cHHHHHHHHHHHHHHHHhh
Confidence 765554 466777888887 7899999999999987653
No 155
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.16 E-value=0.56 Score=51.26 Aligned_cols=274 Identities=9% Similarity=0.026 Sum_probs=145.0
Q ss_pred HhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCC-ChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCc
Q 039062 345 IAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKP-DWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423 (871)
Q Consensus 345 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~ 423 (871)
-|..|.+-+......++-.-++.++...+..+... ....|.+++..+.+.++..+ ......=..++..+...- .+++
T Consensus 6 ~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~-~~~~~~R~~fF~~I~~~~-~~~d 83 (464)
T PF11864_consen 6 ERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQD-SSSGLMRAEFFRDISDPS-NDDD 83 (464)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHHhcCC-Cchh
Confidence 35445555555555555555667777777776653 35689999999999998753 211111122333333333 3444
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCCh------------------------HHHHHHHH
Q 039062 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTP------------------------NVAEKACG 479 (871)
Q Consensus 424 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~------------------------~v~~~a~~ 479 (871)
-..|-.++.+|.+=+..+. .+...+.|.+.+.+..-. ........
T Consensus 84 ~~~~l~aL~~LT~~Grdi~-----------~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 84 FDLRLEALIALTDNGRDID-----------FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred HHHHHHHHHHHHcCCcCch-----------hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 4567777777766554442 122344444444442100 00112222
Q ss_pred HHHHHHhhcccCCCCCCCc-chHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 039062 480 ALYFLAQGYEDVGPSSPLT-PFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHK 558 (871)
Q Consensus 480 ~l~~l~~~~~~~~~~~~l~-~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~ 558 (871)
.+..|..++-.. +...+. ..+..++..++....+... ...+ ..++..+..++.... --.+.+..++..|....+.
T Consensus 153 ~ll~~l~nviKf-n~~~l~e~~i~~lv~~i~~iC~~Ts~-~~di-~~~L~vldaii~y~~-iP~~sl~~~i~vLCsi~~~ 228 (464)
T PF11864_consen 153 DLLQFLVNVIKF-NFNYLDEDEISSLVDQICTICKSTSS-EDDI-EACLSVLDAIITYGD-IPSESLSPCIEVLCSIVNS 228 (464)
T ss_pred HHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHhccCc-HHHH-HHHHHHHHHHHHcCc-CChHHHHHHHHHHhhHhcc
Confidence 333333333332 133333 5677777777776554442 2233 577778887777322 1123444455555544321
Q ss_pred hhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHccc------CcchhhhHHHHHH
Q 039062 559 TLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACR------SATVHEEAMLAIG 632 (871)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~------~~~~~~~a~~~l~ 632 (871)
. .+...+..++.++++. +.....+..++.+|.++ +..+...|+..++
T Consensus 229 ~---------------~l~~~~w~~m~nL~~S------------~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~ 281 (464)
T PF11864_consen 229 V---------------SLCKPSWRTMRNLLKS------------HLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLR 281 (464)
T ss_pred c---------------ccchhHHHHHHHHHcC------------ccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHH
Confidence 1 2333455666666532 23455677777777322 2335567888888
Q ss_pred HHHHHhhhhhhhh--hH--hHHHHHHhhhcCCcc
Q 039062 633 ALAYAAGLDFAKY--MP--DFYKYLEMGLQNFEE 662 (871)
Q Consensus 633 ~l~~~~~~~~~~~--l~--~i~~~l~~~l~~~~~ 662 (871)
.++-..++.-.|. +. .++|.+...++..+.
T Consensus 282 ~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~ 315 (464)
T PF11864_consen 282 MLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSP 315 (464)
T ss_pred HHHhccccCCcceecccHHHHHHHHHHHHhCCCC
Confidence 8887765433332 22 388888888875543
No 156
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=1.7 Score=56.57 Aligned_cols=503 Identities=14% Similarity=0.135 Sum_probs=239.8
Q ss_pred CchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccc---hhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhh
Q 039062 128 QWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVE---QDHVNKILTAVVQGMNASEMNNDVRLAATRALYNAL 204 (871)
Q Consensus 128 ~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~---~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (871)
..|-|+.-|.-++.. +++.+-.++++|...+....|+.+. .+..+.+++.+...+.. -++..+-..|+++++.+-
T Consensus 718 ylp~LM~PLv~aLkg-s~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~-~~~~s~s~~a~rILGKlg 795 (3550)
T KOG0889|consen 718 YLPLLMKPLVFALKG-SPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRP-VPNYSYSHRALRILGKLG 795 (3550)
T ss_pred hhhhhhhHHHHHhcC-CHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHhhc
Confidence 567777777776655 4567778999998888877677662 34455666677777763 236778889999999975
Q ss_pred hcchhcc--------------------cChh-------hHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHHh---HH
Q 039062 205 SFAQANF--------------------SNDM-------ERDYIMRVVCEATQS--AELKIRQAAFECLVSISSTY---YE 252 (871)
Q Consensus 205 ~~~~~~~--------------------~~~~-------~~~~i~~~l~~~l~~--~~~~~~~~a~~~l~~l~~~~---~~ 252 (871)
....... +... -...++...+..+.+ .|+..|..+...+....... ..
T Consensus 796 G~NRq~l~~~q~l~~~~~~~~~~~l~~s~~~~~~~~~lp~~~~i~sA~~~l~s~~~d~~~~~qa~~~l~~~~~~~~~~~~ 875 (3550)
T KOG0889|consen 796 GRNRQFLKRPQDLEEIDEDDIDIRLVFSFKGLAHPLLLPLSKLIRSAFDALVSPNSDPFYRKQAFKYLRCDLLLMVNLSA 875 (3550)
T ss_pred CcchhhcccccccccccCccccceEEEeccccCccccCchHHHHHHHHHHHhCccCCcchHHHHHHHHHHHHHHHHhhhc
Confidence 3321100 0000 013455555665543 35666777766554433221 10
Q ss_pred hhHHhHHHHHHH-------HHHHh------------------------------hCCChhHHHHHHHHHHHHHHHHH--h
Q 039062 253 KLAPYMQDIYSI-------TAKAV------------------------------REDEEPVALQAIEFWSSICDEEI--D 293 (871)
Q Consensus 253 ~~~~~~~~l~~~-------~~~~~------------------------------~~~~~~~~~~a~~~~~~l~~~~~--~ 293 (871)
.+......+... ..... .....+.|..|..+...+++... .
T Consensus 876 ~~~~~~~~l~~~~~~~i~~~~e~~~~n~~~~~~~~~~~~a~~~~~~~~l~~~~~a~~~~elr~~a~~~~~~il~~f~~~~ 955 (3550)
T KOG0889|consen 876 DFKSSIRQLLTLVVWSIDLRLECCEINLDLTERYKSQDYSDRSIFVNALISLFYATSCKELRDEAQDFLEAILRHFALHG 955 (3550)
T ss_pred cchhhHHHHHHhhcchHHHhhHhhhccccccccccccchhHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHH
Confidence 111111111111 11000 00111233333333333333210 0
Q ss_pred hhhhhcC-----CCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHH----HcCCC-
Q 039062 294 ILEEYGS-----DFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVAR----TVGDD- 363 (871)
Q Consensus 294 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~----~~~~~- 363 (871)
.....+. ...++. ......+.+ ...++.+...++..+ -..+.++..++..+.. .+|+.
T Consensus 956 ~~~~~~~~~~~~~~~~~~-~~~~~~lD~--~i~ldal~~~l~~~~---------~~~~~~g~~~l~~i~~~~~~~l~~~~ 1023 (3550)
T KOG0889|consen 956 VVLYTGSNQLKHSNFGSN-LQYKKMLDP--STFLDALVESLSHEN---------SEMRPAGVRALKVIFSTSTLILGSPE 1023 (3550)
T ss_pred HHHhhcchhccccccccc-cccccccCH--HHHHHHHHHHHhccc---------hhhhhhHHHHHHHHHHHHHHhhcCcc
Confidence 0000000 000000 000011111 123566666665321 2456667777766644 33422
Q ss_pred ------cccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHH--------HHH
Q 039062 364 ------IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHV--------KDT 429 (871)
Q Consensus 364 ------~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~v--------r~~ 429 (871)
+++.+++.+.+...++.|+.|.+++..++.+.+......+-.+...++..+...+ .|...++ +..
T Consensus 1024 ~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl-~d~~~e~~~~~~~~~~~~ 1102 (3550)
T KOG0889|consen 1024 RAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVL-KDTESEVSSLPLDEAKDI 1102 (3550)
T ss_pred hhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhh-cCCccccccchHHHHHHH
Confidence 3445555556666678999999999999999987632223334445566555555 5543222 222
Q ss_pred HHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHH
Q 039062 430 TAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSL 508 (871)
Q Consensus 430 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l 508 (871)
....+..+...... ..........++..+...+.+ +..||+.+..+|..+.+.... .+...+.+.-+.+
T Consensus 1103 l~~ll~~~~~~~~~-----~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~-----~v~~L~~p~K~~l 1172 (3550)
T KOG0889|consen 1103 LMDILRVIFIDELA-----EEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGK-----SVVKLLEPFKDVL 1172 (3550)
T ss_pred HHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCC-----cHHHHHHHHHHHH
Confidence 22222222222111 122334556677777777765 789999999999999876422 2222233322222
Q ss_pred -HHhhccCC-hhhhhHHHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHH---hhhc-cCCC--hhhHHHHHHHHH
Q 039062 509 -LTVTHRED-AGESRLRTAAYETLNEVVRSSTDE--TAPMVLQLVPVIMMELHK---TLEG-QKLS--SDEREKQGELQG 578 (871)
Q Consensus 509 -~~~l~~~~-~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~ll~~l~~~l~~---~~~~-~~~~--~~~~~~~~~~~~ 578 (871)
......+- ......+...++++...+...+.- +.+-+..+.-.+...... .... .-++ ...+. ...++.
T Consensus 1173 l~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~-l~~Lr~ 1251 (3550)
T KOG0889|consen 1173 LSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSS-LVRLRV 1251 (3550)
T ss_pred hccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccc-cccchh
Confidence 22222211 002244556667777766666532 222222211221111111 0000 0000 00000 111333
Q ss_pred HHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhc
Q 039062 579 LLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQ 658 (871)
Q Consensus 579 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 658 (871)
.+...+........- ..+...++-+.++..+...+....+++.+.+..++......-..--...+...+-.++..+.
T Consensus 1252 ~ci~ll~~~~~~~d~---~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~ 1328 (3550)
T KOG0889|consen 1252 ACIKLLAACMKLSDF---RTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLS 1328 (3550)
T ss_pred HHHHHHHHHHhcccc---cchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhh
Confidence 333333332222221 12225567788999999999988888888887777666533111112334444433444444
Q ss_pred C
Q 039062 659 N 659 (871)
Q Consensus 659 ~ 659 (871)
+
T Consensus 1329 d 1329 (3550)
T KOG0889|consen 1329 D 1329 (3550)
T ss_pred H
Confidence 3
No 157
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.14 E-value=0.29 Score=51.73 Aligned_cols=242 Identities=14% Similarity=0.068 Sum_probs=150.5
Q ss_pred HHHHHHHHhhc-CCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchh
Q 039062 92 QIKTCLLNTLT-STVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQD 170 (871)
Q Consensus 92 ~i~~~ll~~l~-~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~ 170 (871)
.....++..|. ++++.++..++..+. .. .-+..+..++..+.++++.+|.++...|+.+-
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~---~~-----~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~----------- 114 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL---AQ-----EDALDLRSVLAVLQAGPEGLCAGIQAALGWLG----------- 114 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh---cc-----CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-----------
Confidence 34566777884 556777654433321 11 11334888999999999999999999997532
Q ss_pred hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHh
Q 039062 171 HVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTY 250 (871)
Q Consensus 171 ~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 250 (871)
.+...+.+...+. +.++.+|..++.++...- ..-.+.+...++++++.+|..++.+++.+-..
T Consensus 115 -~~~a~~~L~~~L~--~~~p~vR~aal~al~~r~-------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~- 177 (410)
T TIGR02270 115 -GRQAEPWLEPLLA--ASEPPGRAIGLAALGAHR-------------HDPGPALEAALTHEDALVRAAALRALGELPRR- 177 (410)
T ss_pred -chHHHHHHHHHhc--CCChHHHHHHHHHHHhhc-------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-
Confidence 2233445666777 789999999998777621 11123566667799999999999999987532
Q ss_pred HHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHh
Q 039062 251 YEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILL 330 (871)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 330 (871)
...+. +...+.+.++.+|..|+..+..+.... . .+.+.....
T Consensus 178 -----~a~~~----L~~al~d~~~~VR~aA~~al~~lG~~~-------------------------A----~~~l~~~~~ 219 (410)
T TIGR02270 178 -----LSEST----LRLYLRDSDPEVRFAALEAGLLAGSRL-------------------------A----WGVCRRFQV 219 (410)
T ss_pred -----cchHH----HHHHHcCCCHHHHHHHHHHHHHcCCHh-------------------------H----HHHHHHHHh
Confidence 11122 224578999999999998876553311 1 122222111
Q ss_pred cccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHH
Q 039062 331 KQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVA 410 (871)
Q Consensus 331 ~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i 410 (871)
..+ +..+..+...+... |. +...+.+...+.++. +|..++.++|.+.... .
T Consensus 220 --~~g-------~~~~~~l~~~lal~----~~---~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p~-----------a 270 (410)
T TIGR02270 220 --LEG-------GPHRQRLLVLLAVA----GG---PDAQAWLRELLQAAA--TRREALRAVGLVGDVE-----------A 270 (410)
T ss_pred --ccC-------ccHHHHHHHHHHhC----Cc---hhHHHHHHHHhcChh--hHHHHHHHHHHcCCcc-----------h
Confidence 111 12222111222111 22 256666666666654 8999999999877642 3
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHhh
Q 039062 411 LSFMLSALTKDPNNHVKDTTAWTLGRIFE 439 (871)
Q Consensus 411 ~~~l~~~l~~d~~~~vr~~a~~~l~~~~~ 439 (871)
++.++..+ .|+. ++..|-.++.++..
T Consensus 271 v~~L~~~l-~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 271 APWCLEAM-REPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHHh-cCcH--HHHHHHHHHHHhhC
Confidence 66677778 6554 88888888877765
No 158
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.09 E-value=0.77 Score=51.64 Aligned_cols=142 Identities=17% Similarity=0.245 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHh
Q 039062 664 QVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAAD 743 (871)
Q Consensus 664 ~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~ 743 (871)
.+|..+.-+++.++-.-+.- ....||.+.+-|.-.+ ...+|.+.+-++++++.++......| +|.+...+.
T Consensus 946 ~vra~~vvTlakmcLah~~L----aKr~~P~lvkeLe~~~-~~aiRnNiV~am~D~C~~YTam~d~Y----iP~I~~~L~ 1016 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRL----AKRLMPMLVKELEYNT-AHAIRNNIVLAMGDICSSYTAMTDRY----IPMIAASLC 1016 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhhh-HHHHhcceeeeehhhHHHHHHHHHHh----hHHHHHHhc
Confidence 56778888888887765432 3456777777776553 56789999999999999876544444 455555554
Q ss_pred hcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHH-HHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 039062 744 LSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPH-ILQFLDSMYMEKDMDELVMKTAIGLLGDLA 822 (871)
Q Consensus 744 ~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~ 822 (871)
+ + ..-+|.+++..+..|++- .+..|-.. ++.+++..+. .++++|..|=-+|+.+.
T Consensus 1017 D--------p-----~~iVRrqt~ilL~rLLq~--------~~vKw~G~Lf~Rf~l~l~D---~~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1017 D--------P-----SVIVRRQTIILLARLLQF--------GIVKWNGELFIRFMLALLD---ANEDIRNDAKFYISEVL 1072 (1529)
T ss_pred C--------c-----hHHHHHHHHHHHHHHHhh--------hhhhcchhhHHHHHHHHcc---cCHHHHHHHHHHHHHHH
Confidence 3 2 256888999989988875 13333333 4455555553 57889999999999999
Q ss_pred hHhcccccccccchHHHHHH
Q 039062 823 DTLGSNAGSLIQQSLTSKDF 842 (871)
Q Consensus 823 ~~~~~~~~~~l~~~~~v~~~ 842 (871)
+.-.+.|. +.. ||..+
T Consensus 1073 ~~~~P~~f---~~~-FVe~i 1088 (1529)
T KOG0413|consen 1073 QSEEPNFF---PLN-FVEYI 1088 (1529)
T ss_pred hhcCccch---HHH-HHHHH
Confidence 87655443 222 66655
No 159
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.57 Score=55.78 Aligned_cols=62 Identities=21% Similarity=0.163 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHhc
Q 039062 806 MDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINKAIS 870 (871)
Q Consensus 806 ~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (871)
.+...|..|+..+..+....|.++.+.+++ ..|+|.++..+.|..+.--+...++.++.++|
T Consensus 1553 s~~~~r~~ai~~~~~l~~~lge~~~~lL~q---~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lG 1614 (1621)
T KOG1837|consen 1553 SSRKARYLAIIQVKLLYTKLGENVIVLLPQ---SIPFLAELMEDEDDEVECLCQKLIRQLEEVLG 1614 (1621)
T ss_pred ccHHHHHHHHHHHHHHHHHhcchhHHhhhh---hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999998 67899999988888888888889999999887
No 160
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.07 E-value=0.0083 Score=54.67 Aligned_cols=141 Identities=17% Similarity=0.207 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhhccCCCccchhhHHHHHHH-----------HHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChh
Q 039062 147 VKQATLETLGYLCEEVSPDVVEQDHVNKILTA-----------VVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDM 215 (871)
Q Consensus 147 ~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~-----------l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 215 (871)
+|.+|+.+|+.+++..++..+ ..++..++|. ++..+.. |+++.+|.+|+.++..+++.....+...+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l-~~yW~~llP~~~~~~~~~~~sLlt~il~-Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae 79 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSL-FGYWPALLPDSVLQGRPATPSLLTCILK-DPSPKVRAAAASALAALLEGSKPFLAQAE 79 (182)
T ss_pred hhHHHHHHHHHHHHhcCCcee-HhhHHHHCCCCCCcCCCCCcchhHHHHc-CCchhHHHHHHHHHHHHHHccHHHHHHHH
Confidence 577888888888877534444 4455544442 2222222 89999999999999998864332211110
Q ss_pred ------------------hHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHHHHHh-HHhh-HHhHHHHHHHHHHHhhCCCh
Q 039062 216 ------------------ERDYIMRVVCEATQS-AELKIRQAAFECLVSISSTY-YEKL-APYMQDIYSITAKAVREDEE 274 (871)
Q Consensus 216 ------------------~~~~i~~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~-~~~~-~~~~~~l~~~~~~~~~~~~~ 274 (871)
....+-..+...++. .+..+....++|+..+++.. |..+ ...+..++..+...+.+.|.
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence 011233444445543 46778889999999999873 3333 34455667766667778888
Q ss_pred hHHHHHHHHHHHHHH
Q 039062 275 PVALQAIEFWSSICD 289 (871)
Q Consensus 275 ~~~~~a~~~~~~l~~ 289 (871)
+++..++.+++.+..
T Consensus 160 ~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 160 NVRVAALSCLGALLS 174 (182)
T ss_pred cHHHHHHHHHHHHHc
Confidence 999998888877755
No 161
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.06 E-value=0.0092 Score=47.92 Aligned_cols=86 Identities=22% Similarity=0.303 Sum_probs=66.8
Q ss_pred HHHHHhh-cCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHH
Q 039062 95 TCLLNTL-TSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVN 173 (871)
Q Consensus 95 ~~ll~~l-~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 173 (871)
+.|++.| .++++.+|..++.+++.+ .-++.++.|...+.++++.+|..|..+++.+- .+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------------~~ 61 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL--------GDPEAIPALIELLKDEDPMVRRAAARALGRIG------------DP 61 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC--------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------------HH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc--------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------------CH
Confidence 3577777 788899999999988822 33688999999999999999999999998652 23
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 039062 174 KILTAVVQGMNASEMNNDVRLAATRALY 201 (871)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~ 201 (871)
..++.+...+.+ +.+..+|..|+.+|+
T Consensus 62 ~~~~~L~~~l~~-~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQD-DDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCcHHHHHHHHhhcC
Confidence 455566777774 567888999998874
No 162
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.73 Score=50.78 Aligned_cols=113 Identities=14% Similarity=0.180 Sum_probs=83.6
Q ss_pred chHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH---HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhcc
Q 039062 367 LVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV---NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHG 443 (871)
Q Consensus 367 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l---~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~ 443 (871)
..+..+...+...+..+|..++..+.++....+ ..+...+ |.-+..+...+ .|....||..++..|..+....+.
T Consensus 122 d~I~lll~~~e~~DF~VR~~aIqLlsalls~r~-~e~q~~ll~~P~gIS~lmdlL-~DsrE~IRNe~iLlL~eL~k~n~~ 199 (970)
T KOG0946|consen 122 DNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP-TELQDALLVSPMGISKLMDLL-RDSREPIRNEAILLLSELVKDNSS 199 (970)
T ss_pred hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC-HHHHHHHHHCchhHHHHHHHH-hhhhhhhchhHHHHHHHHHccCch
Confidence 344555566666788999999999999999874 4544433 66778888899 999999999999999888876642
Q ss_pred CCCCCCccchhhHHHHHHHHHHhccCC-----hHHHHHHHHHHHHHHhh
Q 039062 444 STIGTPIITQANCQQIITVLLQSMKDT-----PNVAEKACGALYFLAQG 487 (871)
Q Consensus 444 ~~~~~~~~~~~~~~~il~~l~~~l~d~-----~~v~~~a~~~l~~l~~~ 487 (871)
.-.-..+++++..|+..+... .-|.+.|...|.++.++
T Consensus 200 ------IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 200 ------IQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence 112346677888888887742 35677787878777654
No 163
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.04 E-value=0.0012 Score=59.40 Aligned_cols=96 Identities=18% Similarity=0.238 Sum_probs=79.8
Q ss_pred HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHH-hhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHH---HHh
Q 039062 647 PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRA-LEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDI---ALA 722 (871)
Q Consensus 647 ~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i---~~~ 722 (871)
+..+|.++..+...+. ..+-.|...+.++.+. .++.+.|.+++++..+-..|++. +.++...++.++..+ ...
T Consensus 37 ~~~Lpif~dGL~Et~~-Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr--~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEH-PYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR--DPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred hhHHHHHHhhhhccCc-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhh
Confidence 4567777778876655 5666778888888888 66889999999999999999988 788999999999999 777
Q ss_pred hccChHHhHHHHHHHHHHHHhhc
Q 039062 723 IGENFEKYLMYAMPMLQSAADLS 745 (871)
Q Consensus 723 ~~~~~~~~~~~i~~~l~~~l~~~ 745 (871)
.|+.+.||..+++|.+.-..+.+
T Consensus 114 vG~aLvPyyrqLLp~ln~f~~k~ 136 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVLNLFKNKN 136 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999998555544
No 164
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.89 Score=49.74 Aligned_cols=281 Identities=16% Similarity=0.156 Sum_probs=160.3
Q ss_pred hHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHH
Q 039062 383 QREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITV 462 (871)
Q Consensus 383 ~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~ 462 (871)
..=+|++++|-|--+.+ ....+| +...+...+++.||.-+|.-+|-.+-... . ..+.+.
T Consensus 395 ~EGGalyAlGLIhA~hG-~~~~~y-------L~~~Lk~~~~e~v~hG~cLGlGLa~mGSa---------~----~eiYe~ 453 (929)
T KOG2062|consen 395 KEGGALYALGLIHANHG-RGITDY-------LLQQLKTAENEVVRHGACLGLGLAGMGSA---------N----EEIYEK 453 (929)
T ss_pred cccchhhhhhccccCcC-ccHHHH-------HHHHHHhccchhhhhhhhhhccchhcccc---------c----HHHHHH
Confidence 34457788888876654 333333 44444134578899999888775543322 1 356666
Q ss_pred HHHhccCChHH-HHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCc
Q 039062 463 LLQSMKDTPNV-AEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDET 541 (871)
Q Consensus 463 l~~~l~d~~~v-~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 541 (871)
+-..+..+..| -++|..+++-+.-+- .-.+.++.+.......+ +.++.....-.|....-...+..
T Consensus 454 lKevLy~D~AvsGEAAgi~MGl~mlGt-----------~~~eaiedm~~Ya~ETQ--Heki~RGl~vGiaL~~ygrqe~A 520 (929)
T KOG2062|consen 454 LKEVLYNDSAVSGEAAGIAMGLLMLGT-----------ANQEAIEDMLTYAQETQ--HEKIIRGLAVGIALVVYGRQEDA 520 (929)
T ss_pred HHHHHhccchhhhhHHHHhhhhHhhCc-----------CcHHHHHHHHHHhhhhh--HHHHHHHHHHhHHHHHhhhhhhh
Confidence 66666644444 445555555443221 12345555555555554 33343333333333333222333
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHH-HcccC
Q 039062 542 APMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRV-FACRS 620 (871)
Q Consensus 542 ~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~-l~~~~ 620 (871)
.+++.+++. +.|+ -+|. -+.+.......|.. -...+..+++. .++.+
T Consensus 521 d~lI~el~~----------------dkdp----ilR~--~Gm~t~alAy~GTg----------nnkair~lLh~aVsD~n 568 (929)
T KOG2062|consen 521 DPLIKELLR----------------DKDP----ILRY--GGMYTLALAYVGTG----------NNKAIRRLLHVAVSDVN 568 (929)
T ss_pred HHHHHHHhc----------------CCch----hhhh--hhHHHHHHHHhccC----------chhhHHHhhcccccccc
Confidence 333332211 2222 2332 22222222333322 12345555554 66778
Q ss_pred cchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHcc
Q 039062 621 ATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLS 700 (871)
Q Consensus 621 ~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 700 (871)
.+||++|..+||-++..-+ ..+|..+..|...-++.||..+.-+||..|...|. ..-+..|-...+
T Consensus 569 DDVrRaAVialGFVl~~dp--------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~------~eAi~lLepl~~ 634 (929)
T KOG2062|consen 569 DDVRRAAVIALGFVLFRDP--------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL------KEAINLLEPLTS 634 (929)
T ss_pred hHHHHHHHHHheeeEecCh--------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc------HHHHHHHhhhhc
Confidence 8999999999998774433 23333444454455679999999999988776662 222333333334
Q ss_pred CCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhc
Q 039062 701 SNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLS 745 (871)
Q Consensus 701 ~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~ 745 (871)
++ ..-||+.|+.+++-|..-..+...|-+..+-+.+.+.+.++
T Consensus 635 D~--~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 635 DP--VDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred Ch--HHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 44 45699999999999999888888888888888888888775
No 165
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.92 E-value=0.0081 Score=54.74 Aligned_cols=142 Identities=15% Similarity=0.156 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHhhhcCC---CCchHHHHHH------------HHhhcCCChHHHHHHHHHHHHHhhccCCCc-----
Q 039062 107 DARSTSSQVIAKVAGIELPQ---KQWPELIVSL------------LSNVHQLPAHVKQATLETLGYLCEEVSPDV----- 166 (871)
Q Consensus 107 ~vr~~~a~~l~~i~~~~~~~---~~~~~ll~~L------------~~~l~~~~~~~r~~al~~l~~l~~~~~~~~----- 166 (871)
.||..+..++..+++..-+. +.|+.++|.- .-.+.++++.+|.+|+.++..+.+.. ...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs-k~~L~~Ae 79 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS-KPFLAQAE 79 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc-HHHHHHHH
Confidence 37888999999999883232 4788877754 22345678899999999999888764 111
Q ss_pred --------cc------hhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCc
Q 039062 167 --------VE------QDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAE 232 (871)
Q Consensus 167 --------~~------~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~ 232 (871)
|. ..-..++...++..+.. +.+..+....+||+..++...+-.--..+....++..+...+.+.|
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~-E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQA-EKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence 10 01233444566677765 6777888899999999987655332334455777888888888899
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 039062 233 LKIRQAAFECLVSISSTY 250 (871)
Q Consensus 233 ~~~~~~a~~~l~~l~~~~ 250 (871)
.+++..++-+++.++...
T Consensus 159 ~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CcHHHHHHHHHHHHHcCC
Confidence 999999999999888653
No 166
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.90 E-value=0.032 Score=50.25 Aligned_cols=151 Identities=15% Similarity=0.176 Sum_probs=92.5
Q ss_pred hHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhcc
Q 039062 646 MPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGE 725 (871)
Q Consensus 646 l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~ 725 (871)
.|.+++.+.+.++.+.++.+|..++.++|.+ ..+.||.-.-+..- .+.. ..........-........+.
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGil-----GALDP~~~k~~~~~---~~~~--~~~~~~~~~~~~~l~~~~~~~ 77 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGIL-----GALDPYKHKSIQKS---LDSK--SSENSNDESTDISLPMMGISP 77 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-----cccCcHHHhccccc---CCcc--ccccccccchhhHHhhccCCC
Confidence 3789999999999887899999999999987 34666543311111 1100 000000001111111222222
Q ss_pred ChHHhHH-HHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCC
Q 039062 726 NFEKYLM-YAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEK 804 (871)
Q Consensus 726 ~~~~~~~-~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 804 (871)
....|.+ -++..+...+++. ....-+..+++++..+++.++. ...||++++++.++..++..
T Consensus 78 ~~ee~y~~vvi~~L~~iL~D~------------sLs~~h~~vv~ai~~If~~l~~-----~cv~~L~~viP~~l~~i~~~ 140 (160)
T PF11865_consen 78 SSEEYYPTVVINALMRILRDP------------SLSSHHTAVVQAIMYIFKSLGL-----KCVPYLPQVIPIFLRVIRTC 140 (160)
T ss_pred chHHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHHHHHhcCc-----CchhHHHHHhHHHHHHHHhC
Confidence 3333433 3456667766543 1344455788888888877543 25899999999999998853
Q ss_pred CCCHHHHHHHHHHHHHHHhHh
Q 039062 805 DMDELVMKTAIGLLGDLADTL 825 (871)
Q Consensus 805 ~~~~~~r~~a~~~l~~i~~~~ 825 (871)
++..++..+.-++.+....
T Consensus 141 --~~~~~e~~~~qL~~lv~iv 159 (160)
T PF11865_consen 141 --PDSLREFYFQQLADLVSIV 159 (160)
T ss_pred --CHHHHHHHHHHHHHHHHHh
Confidence 4488999888888887654
No 167
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.90 E-value=0.92 Score=49.41 Aligned_cols=107 Identities=21% Similarity=0.210 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHH
Q 039062 406 IVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFL 484 (871)
Q Consensus 406 ~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l 484 (871)
.+..++.+++.+. ..++..||..++..|..+..... ......+..+...+...+.| .|.||..|..+|..+
T Consensus 82 lV~~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~-------eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrl 153 (892)
T KOG2025|consen 82 LVAGTFYHLLRGT-ESKDKKVRFRVLQILALLSDENA-------EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRL 153 (892)
T ss_pred HHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHhcccc-------ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 5677889999999 99999999999999999887554 45677888899999999988 899999999999988
Q ss_pred HhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHH
Q 039062 485 AQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLN 531 (871)
Q Consensus 485 ~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~ 531 (871)
=+. ...+-. ++...+...+++.. ++.||.+++.+|.
T Consensus 154 Q~d--------~~dee~-~v~n~l~~liqnDp--S~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 154 QGD--------PKDEEC-PVVNLLKDLIQNDP--SDEVRRAALSNIS 189 (892)
T ss_pred hcC--------CCCCcc-cHHHHHHHHHhcCC--cHHHHHHHHHhhc
Confidence 421 111111 23444445555443 5689998887765
No 168
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.89 E-value=0.057 Score=60.73 Aligned_cols=223 Identities=17% Similarity=0.201 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHH----hhhhhhcCCCCCCCCCch
Q 039062 236 RQAAFECLVSISSTYYEKLAPYMQ-DIYSITAKAVREDEEPVALQAIEFWSSICDEEI----DILEEYGSDFTGNSDIPC 310 (871)
Q Consensus 236 ~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~ 310 (871)
|..|+..|+.++.--+-.+.--+. .|+++++..++++-.+.+-.-.-.|..+..... +++++.. .
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g----------~ 556 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENG----------Y 556 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccC----------c
Confidence 667788888777543322221122 689999999999888887766666766643211 1221100 0
Q ss_pred hhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcC--CC--cccchHHHHHhhhcC-CChhhHH
Q 039062 311 FYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVG--DD--IVPLVIPFIEENIAK-PDWRQRE 385 (871)
Q Consensus 311 ~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~--~~--~~~~l~~~l~~~l~~-~~~~~r~ 385 (871)
..|++. +-|. +.-+ -.-|.-|+-.|..++..+. ++ +-+.++..+.+.+++ ++|-.|+
T Consensus 557 ~YF~~v----L~~~-------~~~~-------~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQ 618 (1387)
T KOG1517|consen 557 KYFLQV----LDPS-------QAIP-------PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQ 618 (1387)
T ss_pred eeEEEE----ecCc-------CCCC-------HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHH
Confidence 011110 0010 0000 0245556777888887763 22 235677777888888 4799999
Q ss_pred HHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCC--------C-ccchhhH
Q 039062 386 AATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGT--------P-IITQANC 456 (871)
Q Consensus 386 ~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~--------~-~~~~~~~ 456 (871)
=.+.|||.+=+........-.=......++..+ .|+.|+||.+|..+||.+........+.. . .......
T Consensus 619 W~~icLG~LW~d~~~Arw~G~r~~AhekL~~~L-sD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~ 697 (1387)
T KOG1517|consen 619 WLCICLGRLWEDYDEARWSGRRDNAHEKLILLL-SDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSI 697 (1387)
T ss_pred HHHHHHHHHhhhcchhhhccccccHHHHHHHHh-cCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhH
Confidence 999999999886532111111123456778889 99999999999999999988642110000 0 0001123
Q ss_pred HHHHH----HHHHhccC-ChHHHHHHHHHHHHHHhh
Q 039062 457 QQIIT----VLLQSMKD-TPNVAEKACGALYFLAQG 487 (871)
Q Consensus 457 ~~il~----~l~~~l~d-~~~v~~~a~~~l~~l~~~ 487 (871)
+..++ .++..++| .+-|+.....+|..++-+
T Consensus 698 E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 698 EDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred HHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 33333 55566666 677888888888777654
No 169
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.87 E-value=0.0015 Score=39.79 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=26.5
Q ss_pred hHHHHHhhhcCCChhhHHHHHHHHHHhhcCC
Q 039062 368 VIPFIEENIAKPDWRQREAATYAFGSILEGP 398 (871)
Q Consensus 368 l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~ 398 (871)
++|.+.+.++|++|++|.+|+.+++.+++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 4678889999999999999999999998753
No 170
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.86 E-value=0.057 Score=60.76 Aligned_cols=227 Identities=17% Similarity=0.145 Sum_probs=151.5
Q ss_pred cHHHHHHHHhcCCC-HHHHHH---HHHHHHHH--------HhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccc
Q 039062 3 MEVTQVLLNAQSID-GTVRKH---AEESLKQF--------QEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAK 70 (871)
Q Consensus 3 ~~l~~~l~~~~s~~-~~~r~~---A~~~L~~~--------~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~ 70 (871)
+-|.|+-+.+++++ .+.|-- =+++|+.| ....||+-++..+++|.+ +--|.=|+++|.+++.-
T Consensus 426 ~cLsqlp~~ild~~~~~f~~~s~FFteQLTAFevWLd~gse~r~PPeQLPiVLQVLLS----QvHRlRAL~LL~RFLDl- 500 (1387)
T KOG1517|consen 426 ICLSQLPQLILDAESTDFRHVSPFFTEQLTAFEVWLDYGSESRTPPEQLPIVLQVLLS----QVHRLRALVLLARFLDL- 500 (1387)
T ss_pred HHHHHhHHHHhccCccccccCCchHHHHHHHHHHHHHhccccCCChHhcchHHHHHHH----HHHHHHHHHHHHHHhcc-
Confidence 33556666677764 444431 23444433 223789999999999997 35677788999998874
Q ss_pred hhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHH-----HHHhhcC-C-
Q 039062 71 EQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVS-----LLSNVHQ-L- 143 (871)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~-----L~~~l~~-~- 143 (871)
-.|- .+-.--..|.+-++++|+++..++|..++-+-++|...+ | ..--+|++. .++.+.+ +
T Consensus 501 ---------GpWA-V~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~-SCQ~dLvKe~g~~YF~~vL~~~~~ 568 (1387)
T KOG1517|consen 501 ---------GPWA-VDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD-P-SCQADLVKENGYKYFLQVLDPSQA 568 (1387)
T ss_pred ---------chhh-hhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC-c-hhHHHHHhccCceeEEEEecCcCC
Confidence 2342 222233467788889999999999999999999999887 4 233455544 2222222 1
Q ss_pred -ChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcch-hcccChhhHHHHH
Q 039062 144 -PAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQ-ANFSNDMERDYIM 221 (871)
Q Consensus 144 -~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~-~~~~~~~~~~~i~ 221 (871)
++++|.-|.-+|..++..+ +-.-..-.-.+++..++..+++ ++.+-+|.-.+.||+.+-+-.. ..+ ...++.-.
T Consensus 569 ~~~EqrtmaAFVLAviv~nf-~lGQ~acl~~~li~iCle~lnd-~~~pLLrQW~~icLG~LW~d~~~Arw--~G~r~~Ah 644 (1387)
T KOG1517|consen 569 IPPEQRTMAAFVLAVIVRNF-KLGQKACLNGNLIGICLEHLND-DPEPLLRQWLCICLGRLWEDYDEARW--SGRRDNAH 644 (1387)
T ss_pred CCHHHHHHHHHHHHHHHccc-chhHHHhccccHHHHHHHHhcC-CccHHHHHHHHHHHHHHhhhcchhhh--ccccccHH
Confidence 4578888888888888876 2111011234566778888883 2478999999999999754211 111 11224456
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHHh
Q 039062 222 RVVCEATQSAELKIRQAAFECLVSISSTY 250 (871)
Q Consensus 222 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 250 (871)
+.+...+.++-++||.+|+-+|+.++...
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 67788888899999999999999999863
No 171
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=2 Score=52.60 Aligned_cols=239 Identities=14% Similarity=0.133 Sum_probs=145.1
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHhh
Q 039062 410 ALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD--TPNVAEKACGALYFLAQG 487 (871)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~~l~~l~~~ 487 (871)
.+..+...+ ..++|..|-++..++++++...+ ...+...+...+++.+.+ ++.-|..-..+++.+-+.
T Consensus 877 ~~~l~~~sl-~~~~p~~rc~~~ea~arLaq~v~---------~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhky 946 (2067)
T KOG1822|consen 877 ALTLIVNSL-INPNPKLRCAAAEALARLAQVVG---------SAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKY 946 (2067)
T ss_pred HHHHHhhhh-ccCChHHHHHHHHHHHHHHHhcc---------ccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence 345566777 88999999999999999998875 345777888888888886 444455555666666554
Q ss_pred cccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCCh
Q 039062 488 YEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSS 567 (871)
Q Consensus 488 ~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~ 567 (871)
.+..++ ..++..-+..++....++. .+.|+..++.++..++...+..+..++...+..+...+-..
T Consensus 947 vgs~~s----~qhl~t~v~illal~~Ds~--~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~-------- 1012 (2067)
T KOG1822|consen 947 VGSIGS----GQHLNTSVSILLALATDST--SPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSV-------- 1012 (2067)
T ss_pred ccCCCC----chhcccHHHHHHHHhhcCC--CchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCC--------
Confidence 433222 2345555556666666554 56899999999999999999888888888877777665332
Q ss_pred hhHHHHHHHHHHHHHHHH------HHHHHhCCCCCc---hhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHh
Q 039062 568 DEREKQGELQGLLCGCLQ------VIIQKLGSSEPT---KYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAA 638 (871)
Q Consensus 568 ~~~~~~~~~~~~~~~~l~------~l~~~~~~~~~~---~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 638 (871)
+....++....-+|+. .+++.+|++-.+ ++....+-...+-...-.+..++..+.-.++.++..+.-..
T Consensus 1013 --p~~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFa 1090 (2067)
T KOG1822|consen 1013 --PTSHVEVHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFA 1090 (2067)
T ss_pred --CcchhhhhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhc
Confidence 1111233333445555 677777655100 00111222222323333334446677888888888876444
Q ss_pred hhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHH
Q 039062 639 GLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDIC 677 (871)
Q Consensus 639 ~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~ 677 (871)
+. .-.++.+++.+...+...-- -.|...+.++..+.
T Consensus 1091 pr--~~n~~~lV~~L~~~l~s~~~-i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1091 PR--HVNLDSLVLQLCSLLSSSYL-ILRRASFSCLRQLV 1126 (2067)
T ss_pred ch--hccHHHHHHHHHHHhcchhh-hhhhhHHhhhhHHh
Confidence 33 12345666666665544321 23344455544443
No 172
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.85 E-value=0.038 Score=55.57 Aligned_cols=178 Identities=16% Similarity=0.208 Sum_probs=115.7
Q ss_pred CChhhHHHHH-HHHHHhhc-CCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhH
Q 039062 379 PDWRQREAAT-YAFGSILE-GPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANC 456 (871)
Q Consensus 379 ~~~~~r~~a~-~~l~~l~~-~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 456 (871)
..|+...+.. .++.-+.. ......++.+.+-++|.++..+ +|..+.+|..++.++..+....+.... .........
T Consensus 87 ~~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~ll-DD~~~~~K~~G~~lL~~ll~~~~~~~~-~~L~~tGl~ 164 (282)
T PF10521_consen 87 QPWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLL-DDYSPEIKIQGCQLLHHLLEKVPAAEW-DILRRTGLF 164 (282)
T ss_pred CCcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHh-cCCCHHHHHHHHHHHHHHHHhCChhhh-HHHHHcChH
Confidence 3677655322 34443333 4445678889999999999999 999999999999999999987653200 000111223
Q ss_pred HHHHHHHHHhcc--------C-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHH-HHHHHhhccCC-hhhhhHHHH
Q 039062 457 QQIITVLLQSMK--------D-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIV-QSLLTVTHRED-AGESRLRTA 525 (871)
Q Consensus 457 ~~il~~l~~~l~--------d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il-~~l~~~l~~~~-~~~~~vr~~ 525 (871)
+.+-+++..++. + ...+-..+..|+..++....... ...-...+..++ +.++..+.... ..+..++..
T Consensus 165 ~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~-~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ 243 (282)
T PF10521_consen 165 SVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDD-SNPRSTWLDKILREGILSSMEHESSFSYPRLRTV 243 (282)
T ss_pred HHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCC-cccchHHHHHHHHHHHhhhceeccccCchhHHHH
Confidence 334445555554 2 45677788888888876532211 222233343443 33555443322 113688999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Q 039062 526 AYETLNEVVRSSTDETAPMVLQLVPVIMMELHKT 559 (871)
Q Consensus 526 a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~ 559 (871)
.++.+..+++..|.....+++.+++.+.+.+.+.
T Consensus 244 ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 244 LLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999998877653
No 173
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=96.84 E-value=0.084 Score=56.52 Aligned_cols=202 Identities=15% Similarity=0.170 Sum_probs=114.1
Q ss_pred cccHhHHHHHHHHHHHHHcCCCcccchHH-HHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccC
Q 039062 342 AWNIAMAGGTCLGLVARTVGDDIVPLVIP-FIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTK 420 (871)
Q Consensus 342 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~-~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~ 420 (871)
.++-|..|+++|+.++..++..-+..++. .+..+++++.-..|..+..++...+.........+..+.+.+.+...+ .
T Consensus 100 v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L-~ 178 (441)
T PF12054_consen 100 VIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL-E 178 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH-c
Confidence 35778899999999999998777777776 588899998888999999999999876531111111344555666666 5
Q ss_pred CCc-----------HHHHHHHHHHHHHHhhhhc---cCC-------CC----C-CccchhhHHH----HHHHHHHhccCC
Q 039062 421 DPN-----------NHVKDTTAWTLGRIFEFLH---GST-------IG----T-PIITQANCQQ----IITVLLQSMKDT 470 (871)
Q Consensus 421 d~~-----------~~vr~~a~~~l~~~~~~~~---~~~-------~~----~-~~~~~~~~~~----il~~l~~~l~d~ 470 (871)
++. .++|..+-..+..+...-. ..+ +. . ..+.-+.... .++.+.+.+...
T Consensus 179 ~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~~ 258 (441)
T PF12054_consen 179 NPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSPS 258 (441)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 332 2345555444444433321 000 00 0 0111122222 233333333211
Q ss_pred -------------------------------hHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhh
Q 039062 471 -------------------------------PNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGE 519 (871)
Q Consensus 471 -------------------------------~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~ 519 (871)
-+|+...+.++..+ ..+.+-+.+++..|++.++..+ +
T Consensus 259 ~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l----------~~lP~KLnPiIrpLMdSIK~Ee--n 326 (441)
T PF12054_consen 259 QKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVAL----------GGLPKKLNPIIRPLMDSIKREE--N 326 (441)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------ccCCCCccHHHHHHHHHhhccc--c
Confidence 12333334444333 2344445566666666666665 5
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 039062 520 SRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMEL 556 (871)
Q Consensus 520 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l 556 (871)
..++..+..++..++..+...-..-.++++..|+..+
T Consensus 327 ~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~fl 363 (441)
T PF12054_consen 327 ELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFL 363 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhh
Confidence 6788888899988888766433333355555555544
No 174
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=96.81 E-value=0.0068 Score=54.05 Aligned_cols=132 Identities=10% Similarity=0.061 Sum_probs=95.7
Q ss_pred hhhhhHhHHHHHHhhhcC-----------------CcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCC
Q 039062 642 FAKYMPDFYKYLEMGLQN-----------------FEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQL 704 (871)
Q Consensus 642 ~~~~l~~i~~~l~~~l~~-----------------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 704 (871)
+.|+++.++|.+..-..- ++..++|..|++++-.+...+...+. +..+++.+...+.+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D--- 77 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD--- 77 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS---
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC---
Confidence 457788899988865532 24578999999999999887765554 67788899998876
Q ss_pred CCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccC
Q 039062 705 HRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKN 779 (871)
Q Consensus 705 ~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~ 779 (871)
+.++|.-+...+..++...+..+.+.++.+.+.+...+..+...+....| .|-..+...+++++...+-..+..
T Consensus 78 ~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE-~Ek~~E~~rs~lr~~~~l~~~i~~ 151 (169)
T PF08623_consen 78 EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQE-IEKQQELIRSVLRAVKALNSKIPG 151 (169)
T ss_dssp -HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHH-HHHHHHHHHHHHHHHHHH-HSSTS
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCccccc-HHHHHHHHHHHHHHHHHHHHhCcc
Confidence 46789999999999999999888899999999999999876443222223 344577778889988888555543
No 175
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.80 E-value=1.1 Score=48.88 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHh--hhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccC
Q 039062 86 DANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAG--IELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVS 163 (871)
Q Consensus 86 ~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~--~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~ 163 (871)
..+..+.+...++++..+++..||...+++|+.+.. ...+..-+..+...|...+.+-.+.+|..|+.+|.++-+.-.
T Consensus 79 e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~ 158 (892)
T KOG2025|consen 79 EEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK 158 (892)
T ss_pred hhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC
Confidence 345667777788888888999999999999999987 334434556677777777888888999999999998764320
Q ss_pred CCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 039062 164 PDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYN 202 (871)
Q Consensus 164 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~ 202 (871)
.+. -.++..+...+.+ ||+++||.+|+.++..
T Consensus 159 dee------~~v~n~l~~liqn-DpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 159 DEE------CPVVNLLKDLIQN-DPSDEVRRAALSNISV 190 (892)
T ss_pred CCc------ccHHHHHHHHHhc-CCcHHHHHHHHHhhcc
Confidence 111 1233444455554 9999999999987755
No 176
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.79 E-value=0.59 Score=49.27 Aligned_cols=271 Identities=12% Similarity=0.081 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHccc-CcchhhhHHHHHHHHHHHhh--hhhhhhhHhHHHH
Q 039062 576 LQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACR-SATVHEEAMLAIGALAYAAG--LDFAKYMPDFYKY 652 (871)
Q Consensus 576 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~--~~~~~~l~~i~~~ 652 (871)
+...++..++.++.. +... ......+.+++.+...+..+ +...+..++.++..++..-. ..|.. ...++.
T Consensus 117 i~~~a~~iLt~l~~~-~~~~----~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~--~~~v~~ 189 (429)
T cd00256 117 IVHMSFSILAKLACF-GLAK----MEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL--ADGVPT 189 (429)
T ss_pred HHHHHHHHHHHHHhc-Cccc----cchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH--ccCHHH
Confidence 344566777766542 2211 01223344556666666654 34556667777777764432 12211 124555
Q ss_pred HHhhhcCCc-chhHHHH---HHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccC--
Q 039062 653 LEMGLQNFE-EYQVCAV---TVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN-- 726 (871)
Q Consensus 653 l~~~l~~~~-~~~v~~~---a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~-- 726 (871)
+...++... +.+.... ++|++.--.. ..+.+.. .++++.+.+.++... ...+-+-++.++-++.......
T Consensus 190 L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~--~~~i~~l~~i~k~s~-KEKvvRv~l~~l~Nll~~~~~~~~ 265 (429)
T cd00256 190 LVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKR--LSLIQDLSDILKEST-KEKVIRIVLAIFRNLISKRVDREV 265 (429)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhcc--ccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhhcccccch
Confidence 555554332 2344333 3333332111 1122211 467888888887663 2334455666777766643211
Q ss_pred hHHhHHHHH----HHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHH------hhhccCC-----c-c-ccc----
Q 039062 727 FEKYLMYAM----PMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGI------FQGFKNS-----P-K-TQL---- 785 (871)
Q Consensus 727 ~~~~~~~i~----~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l------~~~~~~~-----~-~-~~~---- 785 (871)
-..+...++ +.+.+.+.... =.|+|..+-...+++..-+.+..+ ...+... + . .+.
T Consensus 266 ~~~~~~~mv~~~l~~~l~~L~~rk---~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 266 KKTAALQMVQCKVLKTLQSLEQRK---YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred hhhHHHHHHHcChHHHHHHHhcCC---CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 112222222 22333333321 136655544333433222222111 1111110 1 1 112
Q ss_pred ----cccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhc--ccccccccchHHHHHHHHHHHcCCChhhHHHHH
Q 039062 786 ----LIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLG--SNAGSLIQQSLTSKDFLNECLSSKDHMIKESAE 859 (871)
Q Consensus 786 ----~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~--~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~ 859 (871)
|...--.++..+..++... .++.+..-|+.=+|..++.+| ......+.. +..+.++..++|++||..|.
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s-~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~----K~~vM~Lm~h~d~~Vr~eAL 417 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETS-VDPIILAVACHDIGEYVRHYPRGKDVVEQLGG----KQRVMRLLNHEDPNVRYEAL 417 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcC-CCcceeehhhhhHHHHHHHCccHHHHHHHcCc----HHHHHHHhcCCCHHHHHHHH
Confidence 2222235677778887542 456666777778899999974 445455553 56677777789999999999
Q ss_pred HHHHHH
Q 039062 860 WARLAI 865 (871)
Q Consensus 860 ~~~~~~ 865 (871)
.|.+.|
T Consensus 418 ~avQkl 423 (429)
T cd00256 418 LAVQKL 423 (429)
T ss_pred HHHHHH
Confidence 988865
No 177
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.072 Score=51.63 Aligned_cols=143 Identities=20% Similarity=0.294 Sum_probs=106.3
Q ss_pred HhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccc
Q 039062 373 EENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIIT 452 (871)
Q Consensus 373 ~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 452 (871)
...+.+.+|.....++..+..+++.- ++.+.+.+..++-.+.+.+ +++...|-.+|+.+++.+.+.+.. ..
T Consensus 94 l~~L~s~dW~~~vdgLn~irrLs~fh-~e~l~~~L~~vii~vvksl-KNlRS~VsraA~~t~~difs~ln~-------~i 164 (334)
T KOG2933|consen 94 LKKLSSDDWEDKVDGLNSIRRLSEFH-PESLNPMLHEVIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNN-------SI 164 (334)
T ss_pred HHHhchHHHHHHhhhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 34567889999999999999998875 5778888889999999999 999999999999999999988852 22
Q ss_pred hhhHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHH
Q 039062 453 QANCQQIITVLLQSMK-DTPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLN 531 (871)
Q Consensus 453 ~~~~~~il~~l~~~l~-d~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~ 531 (871)
...++..+..|+..-. |+.-|++.|-.+|..++.+..+ ..+++.|+.++.+. ++++|..+..++.
T Consensus 165 ~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-----------~~~L~~L~~~~~~~---n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 165 DQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-----------QKLLRKLIPILQHS---NPRVRAKAALCFS 230 (334)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-----------HHHHHHHHHHHhhh---chhhhhhhhcccc
Confidence 3344555555444333 4667899999999999876542 24556666666655 3467777777777
Q ss_pred HHHHhcC
Q 039062 532 EVVRSST 538 (871)
Q Consensus 532 ~l~~~~~ 538 (871)
..+...+
T Consensus 231 ~~v~rl~ 237 (334)
T KOG2933|consen 231 RCVIRLG 237 (334)
T ss_pred ccceecc
Confidence 7666655
No 178
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=1.1 Score=53.53 Aligned_cols=102 Identities=14% Similarity=0.177 Sum_probs=71.2
Q ss_pred CCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccc
Q 039062 708 VKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLI 787 (871)
Q Consensus 708 v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~ 787 (871)
+-...+.++++++...+.++.|+..+++..-. ++ ....|--++..+..+...++ +...
T Consensus 1520 v~~~li~~i~~~~~a~~~d~~pl~~k~l~~tr------------ss-----~~~~r~~ai~~~~~l~~~lg-----e~~~ 1577 (1621)
T KOG1837|consen 1520 VSKLLIAEIASDSVADKDDLKPLNQKILKKTR------------SS-----SRKARYLAIIQVKLLYTKLG-----ENVI 1577 (1621)
T ss_pred HHHHHHHHHHhhccCChhhhHHHHHHHHHHhc------------cc-----cHHHHHHHHHHHHHHHHHhc-----chhH
Confidence 44556777777777777665555554433222 10 23455566777777777754 4477
Q ss_pred cchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccc
Q 039062 788 PYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLI 833 (871)
Q Consensus 788 ~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l 833 (871)
+.+++++|++..+++| .++++-..+-.++..+=..+|..++.|+
T Consensus 1578 ~lL~q~iPfLaEL~ED--~~~~Ve~~~q~li~q~e~~lGE~l~~y~ 1621 (1621)
T KOG1837|consen 1578 VLLPQSIPFLAELMED--EDDEVECLCQKLIRQLEEVLGEPLQSYL 1621 (1621)
T ss_pred HhhhhhhHHHHHHHhh--hHHHHHHHHHHHHHHHHHHhchhhhhcC
Confidence 8889999999999987 5788888888888888888998777664
No 179
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.65 E-value=1.3 Score=47.85 Aligned_cols=140 Identities=9% Similarity=0.142 Sum_probs=96.3
Q ss_pred hhhHHHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 039062 519 ESRLRTAAYETLNEVVRSST---DETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSE 595 (871)
Q Consensus 519 ~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 595 (871)
+...+.+++.|+-.+..... ..+ --..++.++++.+.+. +. .+...+++++.+++-.+++-
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~--~~~dv~~plvqll~dp--------~~-----~i~~~~lgai~NlVmefs~~- 453 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGL--KRNDVAQPLVQLLMDP--------EI-----MIMGITLGAICNLVMEFSNL- 453 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCC--ccchhHHHHHHHhhCc--------ch-----hHHHHHHHHHHHHHhhcccH-
Confidence 44677788888888876653 111 1134445555554321 11 35667888888888877753
Q ss_pred Cchhhhhhh-HHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhh-hhhHhHHHHHHhhhcCCcchhHHHHHHHHH
Q 039062 596 PTKYVFMQY-ADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFA-KYMPDFYKYLEMGLQNFEEYQVCAVTVGVV 673 (871)
Q Consensus 596 ~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l 673 (871)
-..+ ....++.+...+.+.+..+|..++.++..+.....+.+. ..+..+--..+..+.+++++.|++.++.++
T Consensus 454 -----kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqll 528 (678)
T KOG1293|consen 454 -----KSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLL 528 (678)
T ss_pred -----HHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 2223 346788899999999999999999999999877766543 344556555666666777999999999999
Q ss_pred HHHHHH
Q 039062 674 GDICRA 679 (871)
Q Consensus 674 ~~l~~~ 679 (871)
.++.-.
T Consensus 529 RNl~c~ 534 (678)
T KOG1293|consen 529 RNLTCN 534 (678)
T ss_pred HHhhcC
Confidence 887554
No 180
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.60 E-value=0.025 Score=46.83 Aligned_cols=95 Identities=18% Similarity=0.192 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHHcc----cCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHH
Q 039062 603 QYADQIMGLFLRVFAC----RSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICR 678 (871)
Q Consensus 603 ~~~~~i~~~l~~~l~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 678 (871)
+++-.++..+-..+++ .+...+..++.+++.+++..|+.+..+.++++-.|...+..+ +.+..|+++...+.+
T Consensus 7 ~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~---~l~~~al~~W~~fi~ 83 (107)
T PF08064_consen 7 PHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP---ELREEALSCWNCFIK 83 (107)
T ss_pred HHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh---hhHHHHHHHHHHHHH
Confidence 3334444444444444 234468889999999999878888888888888887777544 789999999999999
Q ss_pred Hhh-hcccccHHHHHHHHHHHcc
Q 039062 679 ALE-EKILPYCDGIMTQLLKDLS 700 (871)
Q Consensus 679 ~~~-~~~~~~~~~i~~~l~~~l~ 700 (871)
.++ +++.|.+++++..++..++
T Consensus 84 ~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 84 TLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HCCHHHHHHHHHHHHHHHHHhcc
Confidence 998 6788888888888887654
No 181
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.60 E-value=0.43 Score=50.92 Aligned_cols=261 Identities=14% Similarity=0.125 Sum_probs=133.7
Q ss_pred CCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHH
Q 039062 187 EMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITA 266 (871)
Q Consensus 187 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~ 266 (871)
++++.--..+.+.+..++...+........-..++..++..+.++|+.-|......+..+...++....-....+...+.
T Consensus 101 e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~ 180 (409)
T PF01603_consen 101 EPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFY 180 (409)
T ss_dssp -TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45555555566666665544321111111225678889999999999999999999988887765443333334444444
Q ss_pred HHhhC-CChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccH
Q 039062 267 KAVRE-DEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNI 345 (871)
Q Consensus 267 ~~~~~-~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~ 345 (871)
+.+.. .........+++++.+...-.....+ ....++. ..++|.. .... - ...
T Consensus 181 ~fi~e~~~~~gI~elLeil~sii~gf~~plk~-----------eh~~fl~---~vllPLh----~~~~-~-------~~y 234 (409)
T PF01603_consen 181 RFIYETERHNGIAELLEILGSIINGFAVPLKE-----------EHKQFLR---KVLLPLH----KSPH-L-------SSY 234 (409)
T ss_dssp HHHHTTS--STHHHHHHHHHHHHTT--SS--H-----------HHHHHHH---HTTGGGG----GSTG-G-------GGT
T ss_pred HHhcCcccccCHHHHHHHHHHHHhccCCCCcH-----------HHHHHHH---HHHHHHh----cCCc-H-------HHH
Confidence 44443 33334445677777765521100000 0011111 1122221 1000 0 011
Q ss_pred hHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHH
Q 039062 346 AMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNH 425 (871)
Q Consensus 346 r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~ 425 (871)
...-..|+..+...-+. ....++..+..+.--.+....-..+.-+..+.+.+.+..+......++..+..++ .++|..
T Consensus 235 ~~~L~~~~~~f~~kdp~-l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci-~S~h~q 312 (409)
T PF01603_consen 235 HQQLSYCVVQFLEKDPS-LAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCI-SSPHFQ 312 (409)
T ss_dssp HHHHHHHHHHHHHH-GG-GHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHH-TSSSHH
T ss_pred HHHHHHHHHHHHHhCch-hHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh-CCCCHH
Confidence 22223344444333221 1122222222222222333334445677777887766777888889999999999 999999
Q ss_pred HHHHHHHHHHH--HhhhhccCCCCCCccchhhHHHHHHHHHHhcc----CC--hHHHHHHHHHHHHHHh
Q 039062 426 VKDTTAWTLGR--IFEFLHGSTIGTPIITQANCQQIITVLLQSMK----DT--PNVAEKACGALYFLAQ 486 (871)
Q Consensus 426 vr~~a~~~l~~--~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~----d~--~~v~~~a~~~l~~l~~ 486 (871)
|-..|+..+.+ +...+. .+...++|.+...+. .+ ..|+..++.++..+.+
T Consensus 313 VAErAl~~w~n~~~~~li~-----------~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 313 VAERALYFWNNEYFLSLIS-----------QNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHHGGGGSHHHHHHHH-----------CTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCHHHHHHHH-----------hChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 98888766422 222221 233455555555543 33 4789999998887754
No 182
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.56 E-value=0.37 Score=49.16 Aligned_cols=112 Identities=19% Similarity=0.357 Sum_probs=81.5
Q ss_pred hHHHHHHH-HhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcch
Q 039062 130 PELIVSLL-SNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQ 208 (871)
Q Consensus 130 ~~ll~~L~-~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 208 (871)
.++++.|+ ..++++++.+|+.|+++++-.+-.. .+...+.++.+.+.+. ..+..+|..|++++..++...+
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld------~~~a~~~l~l~~~~~~--~~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLD------KELAKEHLPLFLQALQ--KDDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC------hHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHcC
Confidence 36676655 6778889999999999999766543 2334444556666665 4589999999999999876443
Q ss_pred hc-ccCh------hhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Q 039062 209 AN-FSND------MERDYIMRVVCEATQSAELKIRQAAFECLVSISST 249 (871)
Q Consensus 209 ~~-~~~~------~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 249 (871)
.. +... .....+.+.+...+.+.+++++..+++.+.++.-.
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 97 IDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred chhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 22 2211 12256888888888888999999999999998854
No 183
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.45 E-value=1.3 Score=46.70 Aligned_cols=309 Identities=14% Similarity=0.146 Sum_probs=151.2
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCC-cHHHHHHHHHHHHHHhhhhccCCCC
Q 039062 369 IPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDP-NNHVKDTTAWTLGRIFEFLHGSTIG 447 (871)
Q Consensus 369 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~-~~~vr~~a~~~l~~~~~~~~~~~~~ 447 (871)
.+++. .+++++|.+...++.+++.++...........++.+++.+...+ ..+ +...+..++.+++.+...-.
T Consensus 104 ~~fl~-lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l-~~~~~~~~~~~~v~~L~~LL~~~~----- 176 (429)
T cd00256 104 EPFFN-LLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQL-NNITNNDYVQTAARCLQMLLRVDE----- 176 (429)
T ss_pred HHHHH-HHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHh-hccCCcchHHHHHHHHHHHhCCch-----
Confidence 44444 66778999999999999999864321222234455666677777 544 35667777788877765432
Q ss_pred CCccchhhH-HHHHHHHHHhccC---ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHH
Q 039062 448 TPIITQANC-QQIITVLLQSMKD---TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLR 523 (871)
Q Consensus 448 ~~~~~~~~~-~~il~~l~~~l~d---~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr 523 (871)
....+. ...++.|...+.. +...+-.++.++--+. +.+.. .+.+ +. ..+++.+.+.++... -.++-
T Consensus 177 ---~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLS--F~~~~-~~~~-~~-~~~i~~l~~i~k~s~--KEKvv 246 (429)
T cd00256 177 ---YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLT--FNPHA-AEVL-KR-LSLIQDLSDILKEST--KEKVI 246 (429)
T ss_pred ---HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHh--ccHHH-HHhh-cc-ccHHHHHHHHHHhhh--hHHHH
Confidence 111111 1234455554443 2344555554443331 11100 0111 11 345666666665443 22344
Q ss_pred HHHHHHHHHHHHhcCCC--cHHHHHHHH----HHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Q 039062 524 TAAYETLNEVVRSSTDE--TAPMVLQLV----PVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPT 597 (871)
Q Consensus 524 ~~a~~~l~~l~~~~~~~--~~~~~~~ll----~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 597 (871)
..++.++-.++...... ...+...++ +.+++.+..-. - +++|- ..++ ..+-+.+..-++.+..
T Consensus 247 Rv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk---~-~DedL--~edl-~~L~e~L~~~~k~lts---- 315 (429)
T cd00256 247 RIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK---Y-DDEDL--TDDL-KFLTEELKNSVQDLSS---- 315 (429)
T ss_pred HHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC---C-CcHHH--HHHH-HHHHHHHHHHHHHcCC----
Confidence 46777888888754311 111212222 22233332211 0 12221 1111 1122333333333221
Q ss_pred hhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHH
Q 039062 598 KYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDIC 677 (871)
Q Consensus 598 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~ 677 (871)
|..|...+....+. -++++..- ..|..=+..+.++ =-.++..|.+.+...+++.+...||.=+|.++
T Consensus 316 ---fD~Y~~El~sg~L~-----WSp~H~se-~FW~EN~~kf~~~----~~~llk~L~~iL~~s~d~~~laVAc~Dige~v 382 (429)
T cd00256 316 ---FDEYKSELRSGRLH-----WSPVHKSE-KFWRENADRLNEK----NYELLKILIHLLETSVDPIILAVACHDIGEYV 382 (429)
T ss_pred ---HHHHHHHHhcCCcc-----CCCCCCCc-hHHHHHHHHHHhc----chHHHHHHHHHHhcCCCcceeehhhhhHHHHH
Confidence 55666655544332 11222211 1122222222221 12344555555544456677778888899999
Q ss_pred HHhhh--cccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHH
Q 039062 678 RALEE--KILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIAL 721 (871)
Q Consensus 678 ~~~~~--~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~ 721 (871)
+..+. .+...+ ..=..+.+++.++ +.+||..|+.|++.+..
T Consensus 383 r~~P~gr~i~~~l-g~K~~vM~Lm~h~--d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 383 RHYPRGKDVVEQL-GGKQRVMRLLNHE--DPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHCccHHHHHHHc-CcHHHHHHHhcCC--CHHHHHHHHHHHHHHHH
Confidence 98752 121111 1233466777777 78999999999998754
No 184
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.44 E-value=0.047 Score=44.81 Aligned_cols=94 Identities=18% Similarity=0.251 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHHcccC--c--chhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHH
Q 039062 603 QYADQIMGLFLRVFACRS--A--TVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICR 678 (871)
Q Consensus 603 ~~~~~i~~~l~~~l~~~~--~--~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 678 (871)
+++-.++..+-..+++.+ . .-|..++.+++.+++..|..+..+.|+++-.|..++..+ +.+..|+.++..+.+
T Consensus 7 ~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~---eL~~~al~~W~~~i~ 83 (107)
T smart00802 7 DHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP---ELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHH
Confidence 344444555555555433 2 347889999999999999888888899888888888643 699999999999999
Q ss_pred Hhh-hcccccHHHHHHHHHHHc
Q 039062 679 ALE-EKILPYCDGIMTQLLKDL 699 (871)
Q Consensus 679 ~~~-~~~~~~~~~i~~~l~~~l 699 (871)
.++ +++.+.+++++..++..+
T Consensus 84 ~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 84 TLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred hCCHHHHHHHHHHHHHHHHHhc
Confidence 988 567777777777777654
No 185
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.083 Score=52.68 Aligned_cols=182 Identities=10% Similarity=-0.002 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhH-hHHHHHHhhh
Q 039062 579 LLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMP-DFYKYLEMGL 657 (871)
Q Consensus 579 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l 657 (871)
.++.-+..++..+.... .+.+ -.-+..++..+++.+..+|+.|..++|.++...+..-...+. ..++.|+..+
T Consensus 102 ~ald~Le~lve~iDnAn----dl~~--~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 102 DALDNLEELVEDIDNAN----DLIS--LGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHhhhhHH----hHhh--ccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 36666666666655320 0111 123445555889999999999999999999887754333332 3777788888
Q ss_pred cCCcchhHHHHHHHHHHHHHHHhhhcccccHH-HHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHH
Q 039062 658 QNFEEYQVCAVTVGVVGDICRALEEKILPYCD-GIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMP 736 (871)
Q Consensus 658 ~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~ 736 (871)
..++...+|..|+..++.++++.......++. .=...|.+.+++++.+...+.-++..++.+...-...-.-.-+..++
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~ 255 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ 255 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence 76666688999999999999987643332221 11556777788765466677888888888887765543333334444
Q ss_pred HHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcc
Q 039062 737 MLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFK 778 (871)
Q Consensus 737 ~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~ 778 (871)
.....+... . ..++++.++.++..++....
T Consensus 256 ~~~~~l~~~------l------~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 256 RVLENLISS------L------DFEVNEAALTALLSLLSELS 285 (342)
T ss_pred HHHHHHhhc------c------chhhhHHHHHHHHHHHHHHh
Confidence 444444433 1 13455566666666655543
No 186
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.33 E-value=0.33 Score=49.58 Aligned_cols=112 Identities=14% Similarity=0.152 Sum_probs=85.8
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccch-
Q 039062 91 TQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQ- 169 (871)
Q Consensus 91 ~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~- 169 (871)
.-+...++.++.++++.||..+..|++..+-.+. ..-.+.++.+.+.++.+++.++..|+.++..+.-....+.+..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 3444555589999999999999999999987762 2335678888888877788899999999998887764444421
Q ss_pred ------hhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhc
Q 039062 170 ------DHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSF 206 (871)
Q Consensus 170 ------~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 206 (871)
.....+...+...+. +.++++|..|.+.+..++-.
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLD--SENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hccCccchHhHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhc
Confidence 123567778888888 56889999999999998743
No 187
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.33 E-value=0.054 Score=48.85 Aligned_cols=152 Identities=15% Similarity=0.249 Sum_probs=93.0
Q ss_pred cch--HHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHH
Q 039062 498 TPF--FQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGE 575 (871)
Q Consensus 498 ~~~--~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~ 575 (871)
.|| .+++++.++..++... +..+|..++.++|.+-.--| |..+....-.. ... ...+.+..
T Consensus 3 ~PY~~yP~LL~~L~~iLk~e~--s~~iR~E~lr~lGilGALDP-----~~~k~~~~~~~---~~~--~~~~~~~~----- 65 (160)
T PF11865_consen 3 DPYLDYPELLDILLNILKTEQ--SQSIRREALRVLGILGALDP-----YKHKSIQKSLD---SKS--SENSNDES----- 65 (160)
T ss_pred chHHHhHHHHHHHHHHHHhCC--CHHHHHHHHHHhhhccccCc-----HHHhcccccCC---ccc--cccccccc-----
Confidence 355 3688999999988775 57899999999998865433 21110000000 000 00000000
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhhhh-hHHHHHHHHHHHHcccC-cchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHH
Q 039062 576 LQGLLCGCLQVIIQKLGSSEPTKYVFMQ-YADQIMGLFLRVFACRS-ATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYL 653 (871)
Q Consensus 576 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l 653 (871)
... ..+.....+. ... |..-.++.++..|+++. ..-+..++.++..+.+..|....+|+++++|.+
T Consensus 66 -----~~~-~l~~~~~~~~------~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~ 133 (160)
T PF11865_consen 66 -----TDI-SLPMMGISPS------SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIF 133 (160)
T ss_pred -----hhh-HHhhccCCCc------hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHH
Confidence 000 0011111111 222 33456788888888853 334567888999999999988899999999999
Q ss_pred HhhhcCCcchhHHHHHHHHHHHHHHH
Q 039062 654 EMGLQNFEEYQVCAVTVGVVGDICRA 679 (871)
Q Consensus 654 ~~~l~~~~~~~v~~~a~~~l~~l~~~ 679 (871)
+..+++.++ ..++..+.-|+.+...
T Consensus 134 l~~i~~~~~-~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 134 LRVIRTCPD-SLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHhCCH-HHHHHHHHHHHHHHHH
Confidence 999986655 7777777777776553
No 188
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.24 E-value=2.4 Score=46.19 Aligned_cols=165 Identities=11% Similarity=0.093 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHccc-cc---chhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 039062 36 PSFLLSLSGELANDDKPVDSRKLAGLILKNAL-DA---KEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARST 111 (871)
Q Consensus 36 ~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i-~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~ 111 (871)
.+|...+..++.++=.......--...|++.. .. +.+-....+....+.++|...-.-...+..+|.+++--+|..
T Consensus 239 s~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~ 318 (1128)
T COG5098 239 SGLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCC 318 (1128)
T ss_pred HHHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHH
Confidence 56666666666553222222222234455432 11 111111222233445667666555667788888988888877
Q ss_pred HHHHHHHHHhhhcC----C----CCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhh
Q 039062 112 SSQVIAKVAGIELP----Q----KQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGM 183 (871)
Q Consensus 112 ~a~~l~~i~~~~~~----~----~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l 183 (871)
..++.+.+...... . .....++..+.+.+++..+..|..|+.++..|+..- ..+ ...-..+...+...+
T Consensus 319 ~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~--sk~-~~~r~ev~~lv~r~l 395 (1128)
T COG5098 319 FLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN--SKT-VGRRHEVIRLVGRRL 395 (1128)
T ss_pred HHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc--ccc-cchHHHHHHHHHHHh
Confidence 77777766543211 0 244567778888888999999999999999998863 222 334455666667777
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q 039062 184 NASEMNNDVRLAATRALYNALS 205 (871)
Q Consensus 184 ~~~~~~~~vr~~al~~l~~~~~ 205 (871)
. |.+..||..|++.++.++.
T Consensus 396 q--Drss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 396 Q--DRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred h--hhhHHHHHHHHHHHHHHHh
Confidence 7 8999999999999999864
No 189
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.18 E-value=0.25 Score=49.60 Aligned_cols=216 Identities=17% Similarity=0.162 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHhC-CCCCchhhhhhhHHHHHHHHHHHHccc-CcchhhhHHHHHHHHHHHhhh-hhhhhhHhHHHHHHhh
Q 039062 580 LCGCLQVIIQKLG-SSEPTKYVFMQYADQIMGLFLRVFACR-SATVHEEAMLAIGALAYAAGL-DFAKYMPDFYKYLEMG 656 (871)
Q Consensus 580 ~~~~l~~l~~~~~-~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~-~~~~~l~~i~~~l~~~ 656 (871)
.+.+++.+.+.+. .. +.....|.-..+-..+-++|+-. ...|+..|++....+.+..|+ .+...++-..|.++..
T Consensus 28 ~is~L~kL~k~lq~~~--~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl 105 (307)
T PF04118_consen 28 YISFLGKLLKALQNSN--NQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPL 105 (307)
T ss_pred HHHHHHHHHHHHhccC--CCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHH
Confidence 4455666666555 21 11124456667888888998875 557999999999999999885 4455555555555545
Q ss_pred hcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHH
Q 039062 657 LQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMP 736 (871)
Q Consensus 657 l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~ 736 (871)
+... ...||-..+..+....-.++..+.|.+..++..++..+.++ ..+....+...+..+...+|.. .++.
T Consensus 106 ~~~a-si~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede--~sE~~~~~~~ll~~l~~~v~~~------~F~~ 176 (307)
T PF04118_consen 106 FSYA-SIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDE--GSEFFDRTLKLLDKLKEAVGDK------YFWQ 176 (307)
T ss_pred HHHH-HHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccC--CchHHHHHHHHHHHHHHhcChh------HHHH
Confidence 4432 34788888888887766667788888899999999999877 6888999999999999998877 3444
Q ss_pred HHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcc------CC-ccccccccchHHHHHHHHHHhcCCCCCHH
Q 039062 737 MLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFK------NS-PKTQLLIPYAPHILQFLDSMYMEKDMDEL 809 (871)
Q Consensus 737 ~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~------~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 809 (871)
.+-.++-.. ...|.+++..+..-+.... .. .....+.+-..-++..+...+.| .+-=
T Consensus 177 ~lwl~ii~s--------------p~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D--~~iL 240 (307)
T PF04118_consen 177 CLWLCIITS--------------PSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLED--ENIL 240 (307)
T ss_pred HHHHHHhcC--------------cchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCC--chHH
Confidence 444444443 3466666665555444332 00 01112334444567777787876 3455
Q ss_pred HHHHHHHHHHHHH
Q 039062 810 VMKTAIGLLGDLA 822 (871)
Q Consensus 810 ~r~~a~~~l~~i~ 822 (871)
|++.++.++-.-.
T Consensus 241 VqR~~LDlLl~~~ 253 (307)
T PF04118_consen 241 VQRGFLDLLLSHF 253 (307)
T ss_pred HHHHHHHHHHHhC
Confidence 5777777665433
No 190
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.17 E-value=0.18 Score=52.97 Aligned_cols=178 Identities=13% Similarity=0.174 Sum_probs=98.0
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHhhhhhh
Q 039062 220 IMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVRE-DEEPVALQAIEFWSSICDEEIDILEEY 298 (871)
Q Consensus 220 i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~a~~~~~~l~~~~~~~~~~~ 298 (871)
+++-+.+.+.+.++..|..|+++|.. .+-+..+++++...+.+ ....+....++.+..+.+....+.+
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T---------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~-- 276 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET---------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD-- 276 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc---------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc--
Confidence 45555555556789999999998864 12233334433333321 1112222223333333332211211
Q ss_pred cCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcc-cccccccHhHHHHHHHHHHHHHcCCC---cccchHHHHHh
Q 039062 299 GSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQD-QEEGAWNIAMAGGTCLGLVARTVGDD---IVPLVIPFIEE 374 (871)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~-~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~l~~~l~~ 374 (871)
.+ .-++.+++-.++|.++.++....-... +.+..|.+|.-|+..+..++..++.. .-+.+..++..
T Consensus 277 ------Np----~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k 346 (576)
T KOG2549|consen 277 ------NP----NIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSK 346 (576)
T ss_pred ------CC----ccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 11 124555666666666554432211111 22345999999999999999998754 45667777777
Q ss_pred hhcC--CChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHc
Q 039062 375 NIAK--PDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSAL 418 (871)
Q Consensus 375 ~l~~--~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l 418 (871)
.+.+ ..|..+|+++..|..+....-...+.+.+......+...+
T Consensus 347 ~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l 392 (576)
T KOG2549|consen 347 ALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVL 392 (576)
T ss_pred HhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhc
Confidence 7666 5799999999999888764322223334444444443334
No 191
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.43 Score=46.50 Aligned_cols=182 Identities=14% Similarity=0.131 Sum_probs=122.2
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhh
Q 039062 218 DYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEE 297 (871)
Q Consensus 218 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~ 297 (871)
+..+...+..+.+.|+......+..+..+...+++.+.+.+..++-.+...+++....+...|+..+..+....
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~l------ 160 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSL------ 160 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH------
Confidence 44566666777888999999999999999999999999999998888889999999999998888877776532
Q ss_pred hcCCCCCCCCCchhhhHHhhhhhhHHHHHHHH-hcccCCcccccccccHhHHHHHHHHHHHHHc-CCCcccchHHHHHhh
Q 039062 298 YGSDFTGNSDIPCFYFIKQALPALVPLLLEIL-LKQEEDQDQEEGAWNIAMAGGTCLGLVARTV-GDDIVPLVIPFIEEN 375 (871)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~-~~~~~~~l~~~l~~~ 375 (871)
.+.+.. .+..++..| ....+|. -=+|..|.++|..+.... +...++.+.+.
T Consensus 161 -------------n~~i~~----~ld~lv~~Ll~ka~~dn------rFvreda~kAL~aMV~~vtp~~~L~~L~~~---- 213 (334)
T KOG2933|consen 161 -------------NNSIDQ----ELDDLVTQLLHKASQDN------RFVREDAEKALVAMVNHVTPQKLLRKLIPI---- 213 (334)
T ss_pred -------------HHHHHH----HHHHHHHHHHhhhcccc------hHHHHHHHHHHHHHHhccChHHHHHHHHHH----
Confidence 011211 233333322 2222221 236778888998888766 45555555555
Q ss_pred hcCCChhhHHHHHHHHHHhhcCCCh-hhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 039062 376 IAKPDWRQREAATYAFGSILEGPSP-DKLLHIVNVALSFMLSALTKDPNNHVKDTTAWT 433 (871)
Q Consensus 376 l~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~ 433 (871)
+.+.+.++|..+..++.....-.+. ....+++....+.+...+ .|.-|.+|.++-..
T Consensus 214 ~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~-~d~Lp~~~~~a~~~ 271 (334)
T KOG2933|consen 214 LQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQG-SDKLPELREAARFV 271 (334)
T ss_pred HhhhchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhh-cccccccccchhHH
Confidence 4555567887777776655543321 222334456677777777 88888887666544
No 192
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.06 E-value=0.3 Score=51.48 Aligned_cols=135 Identities=10% Similarity=0.137 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCC---cchhHHHHHHHHHHHHHHHhhh
Q 039062 606 DQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNF---EEYQVCAVTVGVVGDICRALEE 682 (871)
Q Consensus 606 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~---~~~~v~~~a~~~l~~l~~~~~~ 682 (871)
+-.++.+.+.+...+...|..|+..|.. ...+..++|.++..+....+.. .+.......+.++-.+.++-.-
T Consensus 206 QlYy~~It~a~~g~~~~~r~eAL~sL~T-----DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 206 QLYYKEITEACTGSDEPLRQEALQSLET-----DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcc-----CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 3445555555555677788888766542 2233333444444444433322 2333333344444444444344
Q ss_pred cccccHHHHHHHHHHHccCC--------CCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhc
Q 039062 683 KILPYCDGIMTQLLKDLSSN--------QLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLS 745 (871)
Q Consensus 683 ~~~~~~~~i~~~l~~~l~~~--------~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~ 745 (871)
.+.||+..++|.++.++-.. +.+|.+|..++..++.++..++......-+.+...+.+.+.+.
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDN 351 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 68899999999999887432 2267899999999999999999887777788888888888664
No 193
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=96.03 E-value=0.46 Score=48.75 Aligned_cols=148 Identities=11% Similarity=0.157 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHhhccCChhhhhHHH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHH
Q 039062 500 FFQEIVQSLLTVTHREDAGESRLRT-AAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQG 578 (871)
Q Consensus 500 ~~~~il~~l~~~l~~~~~~~~~vr~-~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 578 (871)
+++++++.++.-.++. .+..|+ .++.++++++...+....+.++.++..+++.--.-. .+|-..+|+.+.
T Consensus 68 ~i~~l~~~vL~DY~~~---~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI------~~d~~~yPe~r~ 138 (319)
T PF08767_consen 68 FIPPLLDAVLGDYQNS---VPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMI------NKDFEEYPEHRV 138 (319)
T ss_dssp THHHHHHHHHHHHHHS----GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHH------SSTSSSSHHHHH
T ss_pred HHHHHHHHHHHHHhcC---CccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH------HhhhhhChHHHH
Confidence 4455555444433332 233443 578888888888876555555555555443322221 112223456676
Q ss_pred HHHHHHHHHHHHhCCCCCchhhhh----hhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhh---h----h-hhhh
Q 039062 579 LLCGCLQVIIQKLGSSEPTKYVFM----QYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGL---D----F-AKYM 646 (871)
Q Consensus 579 ~~~~~l~~l~~~~~~~~~~~~~~~----~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~---~----~-~~~l 646 (871)
.....+..+++.+... +. .....+++.+.-.+++.+.++.+.++.++..++..... . | ..|+
T Consensus 139 ~ff~LL~~i~~~~f~~------l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~ 212 (319)
T PF08767_consen 139 NFFKLLRAINEHCFPA------LLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYY 212 (319)
T ss_dssp HHHHHHHHHHHHHTHH------HHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHH------HHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6777777777764322 22 23566777888888888889999999999999877754 2 2 2234
Q ss_pred HhHHHHHHhhhcCCcc
Q 039062 647 PDFYKYLEMGLQNFEE 662 (871)
Q Consensus 647 ~~i~~~l~~~l~~~~~ 662 (871)
-.++..++..+.|...
T Consensus 213 ~~il~~if~vltD~~H 228 (319)
T PF08767_consen 213 LDILQDIFSVLTDSDH 228 (319)
T ss_dssp HHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHHHCccc
Confidence 4455555666665543
No 194
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=96.01 E-value=0.48 Score=42.00 Aligned_cols=153 Identities=15% Similarity=0.140 Sum_probs=91.5
Q ss_pred HHHHHHHHhhcCCc--hHHHHHHHHHHHHHHhhh--cCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCcc
Q 039062 92 QIKTCLLNTLTSTV--ADARSTSSQVIAKVAGIE--LPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVV 167 (871)
Q Consensus 92 ~i~~~ll~~l~~~~--~~vr~~~a~~l~~i~~~~--~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~ 167 (871)
.+++.|+.+|..++ ...-+.++++++.+|... ++.+.|++|.+.+.... ..++ ..|+.++..+......+.+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhhHH
Confidence 57888999988765 345566777777776544 46689999998777654 2222 4578888777633224555
Q ss_pred chhhHHHHHHHHHhhhcCCC-CCHHHHHHHH-HHHHHhhhcchhcccC---hhhHHHHHHHHHHhhccCcH-HHHHHHHH
Q 039062 168 EQDHVNKILTAVVQGMNASE-MNNDVRLAAT-RALYNALSFAQANFSN---DMERDYIMRVVCEATQSAEL-KIRQAAFE 241 (871)
Q Consensus 168 ~~~~~~~i~~~l~~~l~~~~-~~~~vr~~al-~~l~~~~~~~~~~~~~---~~~~~~i~~~l~~~l~~~~~-~~~~~a~~ 241 (871)
.+.+..+++.+.+.+.+|. .+.+....|+ .++...+......... .+..+.+++.+.+.+..+.. ..-..+++
T Consensus 79 -~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~ 157 (174)
T PF04510_consen 79 -IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLR 157 (174)
T ss_pred -HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 6788889999999998542 1222223333 2333344332211110 11223455556666665555 66677777
Q ss_pred HHHHHHHH
Q 039062 242 CLVSISST 249 (871)
Q Consensus 242 ~l~~l~~~ 249 (871)
-+..+++.
T Consensus 158 ~~e~~v~~ 165 (174)
T PF04510_consen 158 DFESFVSR 165 (174)
T ss_pred HHHHHHHH
Confidence 77776654
No 195
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=95.95 E-value=1.4 Score=45.14 Aligned_cols=145 Identities=8% Similarity=0.082 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhh-hHHHHHHHHHHHhhhhhhhhhHhHHHHHH
Q 039062 576 LQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHE-EAMLAIGALAYAAGLDFAKYMPDFYKYLE 654 (871)
Q Consensus 576 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~-~a~~~l~~l~~~~~~~~~~~l~~i~~~l~ 654 (871)
++..++..+...+...... ......++++++..++.-.+.+.+..|+ .++.+++.++...++.+.++++.++..+.
T Consensus 43 iKkeIL~Li~t~i~~~~~~---~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDP---EEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-H---HHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3344555555555443321 2223456677777777777777777786 57889999999999988888887776665
Q ss_pred hhh----cC--CcchhHHHHHHHHHHHHHHHhhhccc----ccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhc
Q 039062 655 MGL----QN--FEEYQVCAVTVGVVGDICRALEEKIL----PYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG 724 (871)
Q Consensus 655 ~~l----~~--~~~~~v~~~a~~~l~~l~~~~~~~~~----~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~ 724 (871)
... .+ .+-++.|..-+.++..+.+.+...+. ..+..++..+.-.+++. ..++...++.++..+.....
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~--~~~I~~~~L~~l~~ll~~~~ 197 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT--NREISETGLNILLELLNNVS 197 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHH
Confidence 443 22 23478999999999999998654332 23467788888888887 78888999999999888765
Q ss_pred c
Q 039062 725 E 725 (871)
Q Consensus 725 ~ 725 (871)
.
T Consensus 198 ~ 198 (319)
T PF08767_consen 198 K 198 (319)
T ss_dssp H
T ss_pred h
Confidence 5
No 196
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.87 Score=45.71 Aligned_cols=142 Identities=12% Similarity=0.155 Sum_probs=91.9
Q ss_pred ChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHH
Q 039062 144 PAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRV 223 (871)
Q Consensus 144 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~ 223 (871)
+...++.|+.-|..+++.+ ..-.+-.....+.+ ++..++ +++..+|..|...++.++...+..-..... ...++.
T Consensus 96 ~le~ke~ald~Le~lve~i-DnAndl~~~ggl~~-ll~~l~--~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E-~~~L~~ 170 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDI-DNANDLISLGGLVP-LLGYLE--NSDAELRELAARVIGTAVQNNPKSQEQVIE-LGALSK 170 (342)
T ss_pred CHHHHHHHHHHHHHHHHhh-hhHHhHhhccCHHH-HHHHhc--CCcHHHHHHHHHHHHHHHhcCHHHHHHHHH-cccHHH
Confidence 5678899999999999887 21110112233333 344777 899999999999999998776543211111 225666
Q ss_pred HHHhhc-cCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhC--CChhHHHHHHHHHHHHHHH
Q 039062 224 VCEATQ-SAELKIRQAAFECLVSISSTYYEKLAPYMQ-DIYSITAKAVRE--DEEPVALQAIEFWSSICDE 290 (871)
Q Consensus 224 l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~--~~~~~~~~a~~~~~~l~~~ 290 (871)
++..+. +.+..+|..|+-++..++.+++.-...++. .=+..+...+++ .+...+..++.++..+...
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 666554 445678899999999999887655554443 114444556766 4555666777777776654
No 197
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=95.74 E-value=0.16 Score=59.46 Aligned_cols=320 Identities=16% Similarity=0.164 Sum_probs=156.3
Q ss_pred HHhhccCChhhhhHHHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHHHHHhhhc-cCCChhhHHHHHHHHHH
Q 039062 509 LTVTHREDAGESRLRTAAYETLNEVVRSSTDE--------TAPMVLQLVPVIMMELHKTLEG-QKLSSDEREKQGELQGL 579 (871)
Q Consensus 509 ~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~~~ll~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~ 579 (871)
++.+.-++..+.+.|..|-.+|-.|+..-++. ....+.+|.......| ...+. .-...++++ ...
T Consensus 241 vQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~-~~lqar~~~~apa~~-----~H~ 314 (2195)
T KOG2122|consen 241 VQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCW-TWLQARGPAIAPASD-----EHQ 314 (2195)
T ss_pred HHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCccc-----chh
Confidence 33333333335678889999999999887742 2222333333222222 21111 112223332 223
Q ss_pred HHHHHHHHHHH-hCCCCCchhhhhhhHH--HHHHHHHHHHcc--------c----CcchhhhHHHHHHHHHHHhhh--hh
Q 039062 580 LCGCLQVIIQK-LGSSEPTKYVFMQYAD--QIMGLFLRVFAC--------R----SATVHEEAMLAIGALAYAAGL--DF 642 (871)
Q Consensus 580 ~~~~l~~l~~~-~~~~~~~~~~~~~~~~--~i~~~l~~~l~~--------~----~~~~~~~a~~~l~~l~~~~~~--~~ 642 (871)
+|.++..|.+. |+.+ ...... ..++.|-+++.- . ...+|.++..+|.++...--. ..
T Consensus 315 lcaA~~~lMK~SFDEE------hR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~ 388 (2195)
T KOG2122|consen 315 LCAALCTLMKLSFDEE------HRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKAT 388 (2195)
T ss_pred hHHHHHHHHHhhccHH------HHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhh
Confidence 55666655542 3332 222211 123333333221 1 224888899898888632211 11
Q ss_pred hhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHH---HHHHHHHHHccCCCCCCcCCchHHHHHHHH
Q 039062 643 AKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCD---GIMTQLLKDLSSNQLHRSVKPPIFSCFGDI 719 (871)
Q Consensus 643 ~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~---~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i 719 (871)
.--...++..++..|....+ ++.+....+|.++.=.....+...+. .+.....-.+.+. .......++++|.++
T Consensus 389 LCs~rgfMeavVAQL~s~pe-eL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~--kEsTLKavLSALWNL 465 (2195)
T KOG2122|consen 389 LCSQRGFMEAVVAQLISAPE-ELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNK--KESTLKAVLSALWNL 465 (2195)
T ss_pred hhhhhhHHHHHHHHHhcChH-HHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhc--ccchHHHHHHHHhhh
Confidence 11235677777777765433 56555555555543332222322221 2222222223322 223445778888888
Q ss_pred HHhhccChHHh--HHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCC-----ccccccccchHH
Q 039062 720 ALAIGENFEKY--LMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNS-----PKTQLLIPYAPH 792 (871)
Q Consensus 720 ~~~~~~~~~~~--~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~ 792 (871)
.-++.++=..+ ++..+.+|+-.|..... .+.+ .+++.-++|+..++.. ...+.+..+ .
T Consensus 466 SAHcteNKA~iCaVDGALaFLVg~LSY~~q-----------s~tL--aIIEsaGGILRNVSS~IAt~E~yRQILR~~--N 530 (2195)
T KOG2122|consen 466 SAHCTENKAEICAVDGALAFLVGTLSYEGQ-----------SNTL--AIIESAGGILRNVSSLIATCEDYRQILRRH--N 530 (2195)
T ss_pred hhcccccchhhhcccchHHHHHhhccccCC-----------cchh--hhhhcCccHHHHHHhHhhccchHHHHHHHh--h
Confidence 88877654333 45666677666654311 1111 2334444444443321 012222222 5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHHHH
Q 039062 793 ILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWAR 862 (871)
Q Consensus 793 i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~ 862 (871)
++..+++.|+. .+-.+...+++.|.++..-.+.+- .||-+.-.|..+.+-+. ++..++-..++.|+
T Consensus 531 CLq~LLQ~LKS--~SLTiVSNaCGTLWNLSAR~p~DQ-q~LwD~gAv~mLrnLIh-SKhkMIa~GSaaAL 596 (2195)
T KOG2122|consen 531 CLQTLLQHLKS--HSLTIVSNACGTLWNLSARSPEDQ-QMLWDDGAVPMLRNLIH-SKHKMIAMGSAAAL 596 (2195)
T ss_pred HHHHHHHHhhh--cceEEeecchhhhhhhhcCCHHHH-HHHHhcccHHHHHHHHh-hhhhhhhhhHHHHH
Confidence 77788888875 456678889999999988765432 23322224554454444 55555544444444
No 198
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.13 Score=53.99 Aligned_cols=152 Identities=15% Similarity=0.177 Sum_probs=105.2
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHH-ccCCCcHHHHHHHHHHHHHHhhhhccCCCCC
Q 039062 370 PFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSA-LTKDPNNHVKDTTAWTLGRIFEFLHGSTIGT 448 (871)
Q Consensus 370 ~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~-l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 448 (871)
.++.+.+.+.+...|+++.+.++.--.+.+. ..++..++.. . .|.+..||.+|..+||-++-.-.
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn-------~~vv~~lLh~av-sD~nDDVrRAAViAlGfvc~~D~------ 584 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTGN-------LGVVSTLLHYAV-SDGNDDVRRAAVIALGFVCCDDR------ 584 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCCc-------chhHhhhheeec-ccCchHHHHHHHHheeeeEecCc------
Confidence 4566777788888899988877765554431 1234444554 5 89999999999999887764432
Q ss_pred CccchhhHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHH
Q 039062 449 PIITQANCQQIITVLLQSMKD--TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAA 526 (871)
Q Consensus 449 ~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a 526 (871)
..++..++.|.+ ++.||...+.+|+-.|.+-.. ...-.+++. +..+. ..-||..|
T Consensus 585 ---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~--------~~a~diL~~---L~~D~---~dfVRQ~A 641 (926)
T COG5116 585 ---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD--------KVATDILEA---LMYDT---NDFVRQSA 641 (926)
T ss_pred ---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc--------HHHHHHHHH---HhhCc---HHHHHHHH
Confidence 456666666665 689999999999988764321 111222222 22333 45799999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 039062 527 YETLNEVVRSSTDETAPMVLQLVPVIMMELHK 558 (871)
Q Consensus 527 ~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~ 558 (871)
+-+++-+.-.+.+...|-+..+...+.+.+.+
T Consensus 642 mIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~ 673 (926)
T COG5116 642 MIAVGMILMQCNPELNPNVKRIIKKFNRVIVD 673 (926)
T ss_pred HHHHHHHHhhcCcccChhHHHHHHHHHHHHhh
Confidence 99999999998888888888877777776654
No 199
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.69 E-value=0.3 Score=53.24 Aligned_cols=191 Identities=18% Similarity=0.213 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhh
Q 039062 216 ERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDIL 295 (871)
Q Consensus 216 ~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~ 295 (871)
+...+++.+.++....|..+|...++-+..++....+. ..-+++++.+...+.+.++.+|..++.++..++..-
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~--~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL---- 400 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQ--ILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKL---- 400 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHH--hhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhh----
Confidence 44568899999999899999988777777666543321 112468888888999999999999999988876631
Q ss_pred hhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchH-HHHHh
Q 039062 296 EEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVI-PFIEE 374 (871)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~ 374 (871)
....+ =..++..+...-.|++ -.+|.-...|++.++......+...++ .....
T Consensus 401 ------------------~~~~L---n~Ellr~~ar~q~d~~-----~~irtntticlgki~~~l~~~~R~~vL~~aftr 454 (690)
T KOG1243|consen 401 ------------------SKRNL---NGELLRYLARLQPDEH-----GGIRTNTTICLGKIAPHLAASVRKRVLASAFTR 454 (690)
T ss_pred ------------------chhhh---cHHHHHHHHhhCcccc-----Ccccccceeeecccccccchhhhccccchhhhh
Confidence 11111 0112222222111222 134544556676666554322222111 11222
Q ss_pred hhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhc
Q 039062 375 NIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 375 ~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (871)
.+.|+-...|.++++++.+..+... ....-..++|.+.... .|++..||..|..++..+.....
T Consensus 455 alkdpf~paR~a~v~~l~at~~~~~---~~~va~kIlp~l~pl~-vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 455 ALKDPFVPARKAGVLALAATQEYFD---QSEVANKILPSLVPLT-VDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hhcCCCCCchhhhhHHHhhcccccc---hhhhhhhccccccccc-cCcccchhhHHHHHHHHHHhhhh
Confidence 5667777889999999888777542 2334467888888888 99999999999999877766553
No 200
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.69 E-value=1 Score=49.61 Aligned_cols=212 Identities=13% Similarity=0.163 Sum_probs=132.1
Q ss_pred CCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhc--C---------CchHHHHHHHHHHHH
Q 039062 50 DKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLT--S---------TVADARSTSSQVIAK 118 (871)
Q Consensus 50 ~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~--~---------~~~~vr~~~a~~l~~ 118 (871)
+....+-..|-.+||+.-. .|. +++ +.+.|+.... . .++.+|..+-..+.+
T Consensus 248 d~~~~V~~~ae~~LKr~~~------------~~e--d~~----~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~k 309 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSV------------SLE--DPD----LVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSK 309 (501)
T ss_pred CCcchHHHHHHHHHhhcCC------------CCC--CHH----HHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHH
Confidence 4567888888889988643 232 222 3334444433 1 124555554444443
Q ss_pred HHhhhcCCCCchHHHHHHHHhhcCC--ChHHHHHHHHHH---HHHhhccCCCccchhhHHHHHHHHHhhhc------CCC
Q 039062 119 VAGIELPQKQWPELIVSLLSNVHQL--PAHVKQATLETL---GYLCEEVSPDVVEQDHVNKILTAVVQGMN------ASE 187 (871)
Q Consensus 119 i~~~~~~~~~~~~ll~~L~~~l~~~--~~~~r~~al~~l---~~l~~~~~~~~~~~~~~~~i~~~l~~~l~------~~~ 187 (871)
=.... ...|..+..+...+.+. +...|..++..+ ...+..+.+..+ ....+.|...++..+. +..
T Consensus 310 S~~Aa---~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~ 385 (501)
T PF13001_consen 310 SVIAA---TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSS 385 (501)
T ss_pred hHHHH---hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCc
Confidence 22211 46688888888888887 556778888888 777777633333 3344555555555662 224
Q ss_pred CCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhH-H--hHHHHHHH
Q 039062 188 MNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLA-P--YMQDIYSI 264 (871)
Q Consensus 188 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~-~--~~~~l~~~ 264 (871)
.+...|..+.++++.+....+..+..+ -.++.-++..+.++++++|..+-++|..++..+...-. + ........
T Consensus 386 ~~~~lR~~aYe~lG~L~~~~p~l~~~d---~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~ 462 (501)
T PF13001_consen 386 EDIELRSLAYETLGLLAKRAPSLFSKD---LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLEL 462 (501)
T ss_pred ccHHHHHHHHHHHHHHHccCccccccc---HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 688999999999999988776655332 45677788888888999999999999999988765443 1 11222222
Q ss_pred HHH-HhhCCChhHHHHHHHHHHH
Q 039062 265 TAK-AVREDEEPVALQAIEFWSS 286 (871)
Q Consensus 265 ~~~-~~~~~~~~~~~~a~~~~~~ 286 (871)
++. ...+....+|..|+.+...
T Consensus 463 l~~~~~~~~~~~~R~~avk~an~ 485 (501)
T PF13001_consen 463 LLLSYIQSEVRSCRYAAVKYANA 485 (501)
T ss_pred HHHhhccchhHHHHHHHHHHHHH
Confidence 222 2234445566666665433
No 201
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.62 E-value=0.57 Score=45.08 Aligned_cols=118 Identities=9% Similarity=0.104 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcC---------CcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHH
Q 039062 628 MLAIGALAYAAGLDFAKYMPDFYKYLEMGLQN---------FEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKD 698 (871)
Q Consensus 628 ~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~---------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~ 698 (871)
+....++.+.-.--+-||+.+++|.++.++-. .+...+|..|..+++..+..++......-+.+...+++.
T Consensus 257 ~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKa 336 (450)
T COG5095 257 VMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKA 336 (450)
T ss_pred HHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHH
Confidence 33344443322223468999999998877632 223458889999999999988865555557777777777
Q ss_pred ccCCCCCCcCCchHHHHHHHHHHhhcc-ChHHhHHHHHHHHHHHHhhc
Q 039062 699 LSSNQLHRSVKPPIFSCFGDIALAIGE-NFEKYLMYAMPMLQSAADLS 745 (871)
Q Consensus 699 l~~~~~~~~v~~~~~~~l~~i~~~~~~-~~~~~~~~i~~~l~~~l~~~ 745 (871)
+-+.+-.....-.++.+++.+....-. -..|-++.....+.+.+.+.
T Consensus 337 fLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle~~ 384 (450)
T COG5095 337 FLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLEKG 384 (450)
T ss_pred HHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHhcc
Confidence 655432333445667777766554322 12344444444455555553
No 202
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.25 Score=50.17 Aligned_cols=134 Identities=18% Similarity=0.181 Sum_probs=103.6
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchh
Q 039062 130 PELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQA 209 (871)
Q Consensus 130 ~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 209 (871)
..-+..|+..+...+..+|..|+..+..+.... |..+ ..+...+++.+...+. |.+..||....+.+..++.....
T Consensus 57 ~ltlkeLl~qlkHhNakvRkdal~glkd~l~s~-p~~l-~~~~~~ll~~~~~~i~--D~~~~vR~~~~qll~~~i~~~~~ 132 (393)
T KOG2149|consen 57 GLTLKELLSQLKHHNAKVRKDALNGLKDLLKSH-PAEL-QSHLYALLQKLRELIL--DDDSLVRDALYQLLDSLILPACK 132 (393)
T ss_pred cccHHHHHhhhcCchHhhhHHHHHHHHHHHHhC-hHHH-HHHHHHHHHHhhhhhc--CccccHHHHHHHHHHHHHhhcch
Confidence 334566677778889999999999999988876 6666 6788888998888888 89999999999999987765432
Q ss_pred cccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHH
Q 039062 210 NFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKA 268 (871)
Q Consensus 210 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 268 (871)
.. .......++..+..++..--+++|..++..+.-++..+|+.+..+...+++.+...
T Consensus 133 e~-~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~ 190 (393)
T KOG2149|consen 133 ED-QSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDV 190 (393)
T ss_pred hh-hcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 22 12233567777777888888999999999999999999887776665555544433
No 203
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.56 E-value=4.6 Score=44.10 Aligned_cols=128 Identities=13% Similarity=0.141 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhh-hh----HHHHHHHHHHHHHccCCCc
Q 039062 349 GGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDK-LL----HIVNVALSFMLSALTKDPN 423 (871)
Q Consensus 349 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~-~~----~~l~~i~~~l~~~l~~d~~ 423 (871)
....+..+++..|.-++.. +..+.+.+.+.+...|.+.+.+.+.+......+. +. ..+..++..+...+ .|.+
T Consensus 282 islFl~kls~l~p~i~lrq-~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl-~D~~ 359 (1128)
T COG5098 282 ISLFLNKLSELSPGIMLRQ-YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERL-SDTY 359 (1128)
T ss_pred HHHHHHHHhhcCchHHHHH-HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHh-hccc
Confidence 4456667776665544433 3445567888999999999999999887643222 33 34567788888899 9999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHh
Q 039062 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQ 486 (871)
Q Consensus 424 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~ 486 (871)
|.+|.-|++.+..++..-. .....-..+.......++| +..||..|+..+..+..
T Consensus 360 py~RtKalqv~~kifdl~s--------k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 360 PYTRTKALQVLEKIFDLNS--------KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred hHHHHHHHHHHHHHHhCcc--------cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 9999999999988886542 2233445777888888888 67889999988776654
No 204
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.51 E-value=0.13 Score=42.71 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=66.3
Q ss_pred CcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhcc-ChHHhHHHHHHHH
Q 039062 660 FEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGE-NFEKYLMYAMPML 738 (871)
Q Consensus 660 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~-~~~~~~~~i~~~l 738 (871)
......+..++..++.+.+..++.+..+.++++..|-..++.+ +++..++.+...+...+++ ++.|++++++-.+
T Consensus 26 ~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~----~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l 101 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP----ELREEALSCWNCFIKTLDEEDLGPLLDQIFAIL 101 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh----hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 4566788899999999999777888888999999998888754 6889999999999999985 5778888887777
Q ss_pred HHHH
Q 039062 739 QSAA 742 (871)
Q Consensus 739 ~~~l 742 (871)
.+..
T Consensus 102 ~~~~ 105 (107)
T PF08064_consen 102 LPLW 105 (107)
T ss_pred HHhc
Confidence 6544
No 205
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=8.3 Score=46.67 Aligned_cols=171 Identities=12% Similarity=0.120 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHHHc-CCCcccchHHHHHhh-hcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCc
Q 039062 346 AMAGGTCLGLVARTV-GDDIVPLVIPFIEEN-IAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423 (871)
Q Consensus 346 r~~a~~~l~~l~~~~-~~~~~~~l~~~l~~~-l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~ 423 (871)
..++..|.+.++..+ +....+.++..+... ..+..|++|.+.+..+....-.-..-.......++-..+...+ .|..
T Consensus 1504 ~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l-~D~~ 1582 (1710)
T KOG1851|consen 1504 KNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLL-NDDQ 1582 (1710)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH-cchH
Confidence 445666666666655 566778888887743 3457899999988888776643211233455678888888999 9998
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC--ChHH-HHHHHHHHHHHHhhcccCCCCCCCcch
Q 039062 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD--TPNV-AEKACGALYFLAQGYEDVGPSSPLTPF 500 (871)
Q Consensus 424 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v-~~~a~~~l~~l~~~~~~~~~~~~l~~~ 500 (871)
..||..|..+|+.+...-.. .... ..-.......+. ...+ ..+|.-.|+.++-.+ +..+.-+
T Consensus 1583 i~vre~Aa~~Lsgl~~~s~~------~~~~----~k~d~~~~~~~s~s~~~i~~HgavlgLgA~Vlaf-----Py~vP~w 1647 (1710)
T KOG1851|consen 1583 IEVREEAAKCLSGLLQGSKF------QFVS----DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAF-----PYVVPLW 1647 (1710)
T ss_pred HHHHHHHHHHHHHHHhcccc------ccch----HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhc-----cccchhh
Confidence 88999999998877654321 1111 011111111111 1222 345556677666543 4444456
Q ss_pred HHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHh
Q 039062 501 FQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRS 536 (871)
Q Consensus 501 ~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~ 536 (871)
++..+..+....+++. .++.++-.++..+-..
T Consensus 1648 ip~~L~~Ls~fa~e~~----~i~~tvkktvseFrrt 1679 (1710)
T KOG1851|consen 1648 IPKPLMNLSSFARESA----AIKQTVKKTVSEFRRT 1679 (1710)
T ss_pred hHHHHHHHHhhcCCch----HHHHHHHHHHHHHHHH
Confidence 6666665555555442 3455555555444443
No 206
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=95.49 E-value=4.6 Score=43.58 Aligned_cols=225 Identities=13% Similarity=0.114 Sum_probs=122.4
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhc
Q 039062 220 IMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYG 299 (871)
Q Consensus 220 i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~ 299 (871)
++..+......++..-++.|-+.|..+-+ .|+.|.. .+.+++ .+..++....|+..+..+....-.+.++.
T Consensus 15 llDkVVttfyqg~g~~q~qAq~iLtkFq~-~PdaWtk-ad~IL~------~S~~pqskyiALs~LdklIttkWkllp~~- 85 (1053)
T COG5101 15 LLDKVVTTFYQGDGRKQEQAQRILTKFQE-LPDAWTK-ADYILN------NSKLPQSKYIALSLLDKLITTKWKLLPEG- 85 (1053)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHh-CchHHHH-HHHHHh------cccCcchhhhHHHHHHHHHHhhhhhCCcH-
Confidence 33334333334566667778787777654 3444443 122333 45566666777777777766432222210
Q ss_pred CCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHH-------HHHHHHHHcCCCcccchHHHH
Q 039062 300 SDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGT-------CLGLVARTVGDDIVPLVIPFI 372 (871)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~-------~l~~l~~~~~~~~~~~l~~~l 372 (871)
.+.-++.+ ++..+.+. ..|+ .+|..--. .|-.+.+.-...-||.++|-+
T Consensus 86 ----------~r~GiRny---vv~~vI~~----s~dd-------~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpel 141 (1053)
T COG5101 86 ----------MRQGIRNY---VVQLVIEK----SQDD-------KVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPEL 141 (1053)
T ss_pred ----------HHHHHHHH---HHHHHHHh----cccH-------HHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHH
Confidence 01122222 22222221 1111 22221111 222222222233466666665
Q ss_pred HhhhcCCChhhHHHHHHHHHHhhcCC---Ch------------hhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 039062 373 EENIAKPDWRQREAATYAFGSILEGP---SP------------DKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRI 437 (871)
Q Consensus 373 ~~~l~~~~~~~r~~a~~~l~~l~~~~---~~------------~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~ 437 (871)
....+ .+..+.+-.+.++..+.+.. +. ..+...+++++..+.+-++...++..-.+.+..+-++
T Consensus 142 i~~S~-~s~~vCeNnmivLklLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrf 220 (1053)
T COG5101 142 INVSQ-ISMEVCENNMIVLKLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRF 220 (1053)
T ss_pred Hhhcc-chHHHHhccHHHHHHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 43322 44556666666666665532 11 1223345666666666664566777888999999999
Q ss_pred hhhhccCCCCCCccchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHh
Q 039062 438 FEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGALYFLAQ 486 (871)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~~l~~l~~ 486 (871)
++|++ ..--+...++..+...+...|..|..+..||..+++
T Consensus 221 l~wiP--------l~yIfeTnIieLv~~~f~s~pd~r~~tl~CLtEi~~ 261 (1053)
T COG5101 221 LEWIP--------LDYIFETNIIELVLEHFNSMPDTRVATLSCLTEIVD 261 (1053)
T ss_pred HhhCc--------hhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 99996 234566788888888888888888888888887765
No 207
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.43 E-value=5.2 Score=43.83 Aligned_cols=295 Identities=13% Similarity=0.165 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHH
Q 039062 146 HVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVC 225 (871)
Q Consensus 146 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~ 225 (871)
..|..|++-+......+ + -.....+.......+.. +.+.+.|.++++.+..++...... ....+..+.+.+.
T Consensus 5 ~~R~~a~~~l~~~i~~~-~----~~~i~~iW~~~~DLi~~-~~p~e~R~~~~~ll~~~i~~~~~~--~~~~R~~fF~~I~ 76 (464)
T PF11864_consen 5 SERIKAAEELCESIQKY-P----LSSIEEIWYAAKDLIDP-NQPSEARRAALELLIACIKRQDSS--SGLMRAEFFRDIS 76 (464)
T ss_pred HHHHHHHHHHHHHHHhC-C----chHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHccccc--cHHHHHHHHHHHh
Confidence 45667777777766655 2 24455666555666653 567889999999999998764331 1234556666664
Q ss_pred HhhccCcHHHHHHHHHHHHHHHHH---hHHhhHHhHHHHHHHHHHHhh-------C-------------CChhHHHHHHH
Q 039062 226 EATQSAELKIRQAAFECLVSISST---YYEKLAPYMQDIYSITAKAVR-------E-------------DEEPVALQAIE 282 (871)
Q Consensus 226 ~~l~~~~~~~~~~a~~~l~~l~~~---~~~~~~~~~~~l~~~~~~~~~-------~-------------~~~~~~~~a~~ 282 (871)
..-.++|-+.+..++..|+.=... +...+.+.+..-+..+++... . .+.......+.
T Consensus 77 ~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 156 (464)
T PF11864_consen 77 DPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQ 156 (464)
T ss_pred cCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHH
Confidence 443444555566666555531111 111222222222222221110 0 01122223344
Q ss_pred HHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHH--Hc
Q 039062 283 FWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVAR--TV 360 (871)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~--~~ 360 (871)
++..+++... ..+-+..+..++..++.....+...+ .+ .++...++.+.. .+
T Consensus 157 ~l~nviKfn~------------------~~l~e~~i~~lv~~i~~iC~~Ts~~~-------di-~~~L~vldaii~y~~i 210 (464)
T PF11864_consen 157 FLVNVIKFNF------------------NYLDEDEISSLVDQICTICKSTSSED-------DI-EACLSVLDAIITYGDI 210 (464)
T ss_pred HHHHHHhcCC------------------CCCCHHHHHHHHHHHHHHHhccCcHH-------HH-HHHHHHHHHHHHcCcC
Confidence 4444433210 01112333344444444433222211 12 445677777766 34
Q ss_pred CCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHH--HHccCCCcHHHHHHHHHHHHHHh
Q 039062 361 GDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFML--SALTKDPNNHVKDTTAWTLGRIF 438 (871)
Q Consensus 361 ~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~--~~l~~d~~~~vr~~a~~~l~~~~ 438 (871)
|...++.++..+....+.. .....+-.++..+..+-.... .+..+...+. ..- ..++..+-..|+..++.+.
T Consensus 211 P~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~~---~i~~L~~iL~~~~~~-~~~~~~~lRGAv~~l~~ll 284 (464)
T PF11864_consen 211 PSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGHS---AIRTLCDILRSPDPQ-NKRDINVLRGAVFFLRMLL 284 (464)
T ss_pred ChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHHH---HHHHHHHHHcccCcc-ccccHHHHhhHHHHHHHHH
Confidence 6777777777776554433 233344447777775421111 1222333221 111 2234445456666666655
Q ss_pred hhhccCCCCCCccchhhHHH--HHHHHHHhccC-ChHHHHHHHHHHHHHH
Q 039062 439 EFLHGSTIGTPIITQANCQQ--IITVLLQSMKD-TPNVAEKACGALYFLA 485 (871)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~--il~~l~~~l~d-~~~v~~~a~~~l~~l~ 485 (871)
-..++. ....-.+.. +++.+...++. +++|-.....++.++.
T Consensus 285 ~~~~~~-----~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 285 WGSGEQ-----GYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred hccccC-----CcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 444211 122222334 99999999984 6677666666666666
No 208
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.43 E-value=0.82 Score=48.51 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcC--CCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCc
Q 039062 89 VKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELP--QKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDV 166 (871)
Q Consensus 89 ~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~--~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~ 166 (871)
..+.+...+++++.+++..||....++++.+...-.+ ..-+..++..|...+-+-...+|..|+.+|.++-+..
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~---- 163 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME---- 163 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc----
Confidence 3455566777788889999999999999988765422 1234556666666666667789999999998875432
Q ss_pred cchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 039062 167 VEQDHVNKILTAVVQGMNASEMNNDVRLAATRALY 201 (871)
Q Consensus 167 ~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~ 201 (871)
...-..+...+...+++ ||+.+||.+|+--+.
T Consensus 164 --~neen~~~n~l~~~vqn-DPS~EVRr~allni~ 195 (885)
T COG5218 164 --LNEENRIVNLLKDIVQN-DPSDEVRRLALLNIS 195 (885)
T ss_pred --CChHHHHHHHHHHHHhc-CcHHHHHHHHHHHee
Confidence 12233444445555554 999999999886543
No 209
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.37 E-value=0.16 Score=41.71 Aligned_cols=93 Identities=12% Similarity=0.144 Sum_probs=71.1
Q ss_pred hhHhHHHHHHhhhcCCc---chhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHH
Q 039062 645 YMPDFYKYLEMGLQNFE---EYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIAL 721 (871)
Q Consensus 645 ~l~~i~~~l~~~l~~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~ 721 (871)
++=.++..+-..+.+.+ ....+..++..++.+.+..+..+..+.++++..|...++. ++++..++.|...+..
T Consensus 8 ~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~----~eL~~~al~~W~~~i~ 83 (107)
T smart00802 8 HFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI----PELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----hhHHHHHHHHHHHHHH
Confidence 33344555555554443 4567889999999999988888888899999999988874 4589999999999999
Q ss_pred hhcc-ChHHhHHHHHHHHHHH
Q 039062 722 AIGE-NFEKYLMYAMPMLQSA 741 (871)
Q Consensus 722 ~~~~-~~~~~~~~i~~~l~~~ 741 (871)
.+.+ +..+.+++++-.+.+.
T Consensus 84 ~L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 84 TLKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred hCCHHHHHHHHHHHHHHHHHh
Confidence 9875 4667777777666654
No 210
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.32 E-value=3.4 Score=47.62 Aligned_cols=105 Identities=20% Similarity=0.218 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCC---ChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCC
Q 039062 346 AMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKP---DWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDP 422 (871)
Q Consensus 346 r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~---~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~ 422 (871)
+..+.++|+.+.. |..++.+...+.+. ....|.+|+++|..++..+ ++.+.+.+ ++.+.. ...
T Consensus 507 ~~~~LkaLgN~g~-------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l---~~I~~n---~~e 572 (618)
T PF01347_consen 507 KIVYLKALGNLGH-------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREIL---LPIFMN---TTE 572 (618)
T ss_dssp HHHHHHHHHHHT--------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHH---HHHHH----TTS
T ss_pred HHHHHHHhhccCC-------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHH---HHHhcC---CCC
Confidence 4445566655532 45555665555543 5688999999999887765 44443332 232221 346
Q ss_pred cHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC--ChHHHHHHHHH
Q 039062 423 NNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD--TPNVAEKACGA 480 (871)
Q Consensus 423 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~~ 480 (871)
+++||-+|+..|-+ ..+. ..++..+...+.. +..|.....+.
T Consensus 573 ~~EvRiaA~~~lm~---~~P~-------------~~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 573 DPEVRIAAYLILMR---CNPS-------------PSVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp -HHHHHHHHHHHHH---T----------------HHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred ChhHHHHHHHHHHh---cCCC-------------HHHHHHHHHHHhhCchHHHHHHHHHh
Confidence 77899999877543 2121 2455566666653 45565554443
No 211
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.30 E-value=0.82 Score=50.19 Aligned_cols=116 Identities=9% Similarity=0.134 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcc
Q 039062 543 PMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSAT 622 (871)
Q Consensus 543 ~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 622 (871)
.|...++|.+...++... +. ++...+++-+..|.+.++.+ .+.+.+++.|+..+++.+..
T Consensus 345 ~~~~~~~p~l~pi~~~~~---------~~---~~~l~i~e~mdlL~~Kt~~e--------~~~~~IlplL~~S~~~~~~~ 404 (700)
T KOG2137|consen 345 EFGPKMLPALKPIYSASD---------PK---QALLFILENMDLLKEKTPPE--------EVKEKILPLLYRSLEDSDVQ 404 (700)
T ss_pred hhhhhhhHHHHHHhccCC---------cc---cchhhHHhhHHHHHhhCChH--------HHHHHHHHHHHHHhcCcchh
Confidence 455666777766665321 10 23334666777788877755 46788999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhh-HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh
Q 039062 623 VHEEAMLAIGALAYAAGLDFAKYM-PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE 681 (871)
Q Consensus 623 ~~~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 681 (871)
+++.++..+..+++.+.- +++ ..++|.+......+....++.+++.|++.+++.+.
T Consensus 405 iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 405 IQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred hHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH
Confidence 999999999999988763 333 45778777666556677899999999999987765
No 212
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.30 E-value=0.27 Score=50.85 Aligned_cols=84 Identities=13% Similarity=0.269 Sum_probs=56.3
Q ss_pred hHHhhhhhhHHHHHHHHhcccCCcc-cccccccHhHHHHHHHHHHHHHcCCC---cccchHHHHHhhhcCC--ChhhHHH
Q 039062 313 FIKQALPALVPLLLEILLKQEEDQD-QEEGAWNIAMAGGTCLGLVARTVGDD---IVPLVIPFIEENIAKP--DWRQREA 386 (871)
Q Consensus 313 ~~~~~~~~l~~~l~~~l~~~~~d~~-~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~l~~~l~~~l~~~--~~~~r~~ 386 (871)
++.+++-.++|.++.++....-... +.++.|.+|..|+..+..++..++.. +.|.+...+.+.+.++ ....+++
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YG 330 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYG 330 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhH
Confidence 4556666667766665543221111 12456999999999999999999744 4566666666666553 3455999
Q ss_pred HHHHHHHhhc
Q 039062 387 ATYAFGSILE 396 (871)
Q Consensus 387 a~~~l~~l~~ 396 (871)
|+..++.+..
T Consensus 331 Ai~GL~~lG~ 340 (343)
T cd08050 331 AIVGLSALGP 340 (343)
T ss_pred HHHHHHHhCc
Confidence 9999988864
No 213
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=10 Score=46.00 Aligned_cols=151 Identities=14% Similarity=0.066 Sum_probs=88.9
Q ss_pred HHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhc-cChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHH
Q 039062 689 DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG-ENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGIL 767 (871)
Q Consensus 689 ~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~ 767 (871)
+.++..+.....++ ..+.+|..++..+....-..- .......+.+...+...+.+. ..++|+.+.
T Consensus 1525 ~e~l~~l~~~~~~~-~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~-------------~i~vre~Aa 1590 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADS-STWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDD-------------QIEVREEAA 1590 (1710)
T ss_pred HHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcch-------------HHHHHHHHH
Confidence 45555555422222 268898888887776553321 134456677777777777542 256999999
Q ss_pred HHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHH
Q 039062 768 EAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECL 847 (871)
Q Consensus 768 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~ 847 (871)
+++.+++++-... + .+...............+....-.|+--+|.++-.+|=.+-- |+...|..+.
T Consensus 1591 ~~Lsgl~~~s~~~-----~---~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~------wip~~L~~Ls 1656 (1710)
T KOG1851|consen 1591 KCLSGLLQGSKFQ-----F---VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPL------WIPKPLMNLS 1656 (1710)
T ss_pred HHHHHHHhccccc-----c---chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchh------hhHHHHHHHH
Confidence 9999999873221 1 222222322222222234444667788889998888543333 4444444444
Q ss_pred cC--CChhhHHHHHHHHHHHHH
Q 039062 848 SS--KDHMIKESAEWARLAINK 867 (871)
Q Consensus 848 ~~--~~~~~~~~~~~~~~~~~~ 867 (871)
.. +...+++++..+...-++
T Consensus 1657 ~fa~e~~~i~~tvkktvseFrr 1678 (1710)
T KOG1851|consen 1657 SFARESAAIKQTVKKTVSEFRR 1678 (1710)
T ss_pred hhcCCchHHHHHHHHHHHHHHH
Confidence 32 447888888887765554
No 214
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=5.5 Score=43.69 Aligned_cols=150 Identities=11% Similarity=0.074 Sum_probs=95.1
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHhH-----HhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhh
Q 039062 220 IMRVVCEATQSAELKIRQAAFECLVSISSTYY-----EKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDI 294 (871)
Q Consensus 220 i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~ 294 (871)
.-+.+++.++.++..+|..|+..+..+.-... +.+...++.-+..+...+.++-+.+|..|+.-+..+....
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f--- 251 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF--- 251 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH---
Confidence 45667888999999999999999887764321 2233444555667777889999999998877655543321
Q ss_pred hhhhcCCCCCCCCCchhhhHHhhhh-hhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHc-CCCcccchHHHH
Q 039062 295 LEEYGSDFTGNSDIPCFYFIKQALP-ALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTV-GDDIVPLVIPFI 372 (871)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~-~~~~~~~l~~~l 372 (871)
-..+| .++.-++..+. ++ -..|....+|-+..++|-.+...- ....+..++|.+
T Consensus 252 --------------------We~iP~~i~~~ll~kI~---d~-~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal 307 (1005)
T KOG1949|consen 252 --------------------WEMIPPTILIDLLKKIT---DE-LAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPAL 307 (1005)
T ss_pred --------------------HHHcCHHHHHHHHHHHH---HH-hhhccchheehhHhcCcHHHHcCccchhHHHHHHHhc
Confidence 11111 22222222111 00 000112367877788887776543 345567777877
Q ss_pred HhhhcCCChhhHHHHHHHHHHhhc
Q 039062 373 EENIAKPDWRQREAATYAFGSILE 396 (871)
Q Consensus 373 ~~~l~~~~~~~r~~a~~~l~~l~~ 396 (871)
...+.+..-++|-|+...+..+-.
T Consensus 308 ~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 308 RYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred chhhhccchhHHHHHHHHHHHHHh
Confidence 778888888999998887776654
No 215
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=7.1 Score=43.18 Aligned_cols=287 Identities=18% Similarity=0.200 Sum_probs=149.9
Q ss_pred HHHHHHHHHhccC--ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHH
Q 039062 457 QQIITVLLQSMKD--TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVV 534 (871)
Q Consensus 457 ~~il~~l~~~l~d--~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~ 534 (871)
..+...|.+.|.. ++.|+..+|.-|+-..-+ ..=..+++.+-..+...+ .-.-++|--++|-+.
T Consensus 412 ~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mG-----------Sa~~eiYe~lKevLy~D~---AvsGEAAgi~MGl~m 477 (929)
T KOG2062|consen 412 RGITDYLLQQLKTAENEVVRHGACLGLGLAGMG-----------SANEEIYEKLKEVLYNDS---AVSGEAAGIAMGLLM 477 (929)
T ss_pred ccHHHHHHHHHHhccchhhhhhhhhhccchhcc-----------cccHHHHHHHHHHHhccc---hhhhhHHHHhhhhHh
Confidence 4567777777774 678898888877643211 112345555555544432 223456666666665
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHH
Q 039062 535 RSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLR 614 (871)
Q Consensus 535 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~ 614 (871)
-.... .+.+.-++..-.++ +...-.|+.+.+ ++. ..++.+ ..+++++ -+
T Consensus 478 lGt~~------~eaiedm~~Ya~ET-----------QHeki~RGl~vG-iaL--~~ygrq--------e~Ad~lI---~e 526 (929)
T KOG2062|consen 478 LGTAN------QEAIEDMLTYAQET-----------QHEKIIRGLAVG-IAL--VVYGRQ--------EDADPLI---KE 526 (929)
T ss_pred hCcCc------HHHHHHHHHHhhhh-----------hHHHHHHHHHHh-HHH--HHhhhh--------hhhHHHH---HH
Confidence 54432 22222222222111 111112222221 111 122322 1233333 34
Q ss_pred HHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHH
Q 039062 615 VFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQ 694 (871)
Q Consensus 615 ~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~ 694 (871)
++.+.++-+|...+-.++.-- .|..=...+.++++. ..+|.++ +||..|+-.||-++-.-+ +..+.
T Consensus 527 l~~dkdpilR~~Gm~t~alAy--~GTgnnkair~lLh~---aVsD~nD-DVrRaAVialGFVl~~dp--------~~~~s 592 (929)
T KOG2062|consen 527 LLRDKDPILRYGGMYTLALAY--VGTGNNKAIRRLLHV---AVSDVND-DVRRAAVIALGFVLFRDP--------EQLPS 592 (929)
T ss_pred HhcCCchhhhhhhHHHHHHHH--hccCchhhHHHhhcc---cccccch-HHHHHHHHHheeeEecCh--------hhchH
Confidence 555667777776655443322 222222233344332 2444444 899999999997644433 33334
Q ss_pred HHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 039062 695 LLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIF 774 (871)
Q Consensus 695 l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~ 774 (871)
.+..|+.+- +.-||-.++.++|-.+...|.. ..+..|..... | ...-+|++++-++.-+.
T Consensus 593 ~V~lLses~-N~HVRyGaA~ALGIaCAGtG~~------eAi~lLepl~~--------D-----~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 593 TVSLLSESY-NPHVRYGAAMALGIACAGTGLK------EAINLLEPLTS--------D-----PVDFVRQGALIALAMIM 652 (929)
T ss_pred HHHHHhhhc-ChhhhhhHHHHHhhhhcCCCcH------HHHHHHhhhhc--------C-----hHHHHHHHHHHHHHHHH
Confidence 444444332 5779999999999988888864 22222222221 2 23568999998887766
Q ss_pred hhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhccc
Q 039062 775 QGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSN 828 (871)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~ 828 (871)
-.. .+...|-+..|...+.+...|. ..+.+.+....+=..|...-|.+
T Consensus 653 ~Q~-----t~~~~pkv~~frk~l~kvI~dK-hEd~~aK~GAilAqGildaGGrN 700 (929)
T KOG2062|consen 653 IQQ-----TEQLCPKVNGFRKQLEKVINDK-HEDGMAKFGAILAQGILDAGGRN 700 (929)
T ss_pred Hhc-----ccccCchHHHHHHHHHHHhhhh-hhHHHHHHHHHHHhhhhhcCCce
Confidence 552 3456677778888888887763 34444444433334444444543
No 216
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.88 E-value=2.7 Score=46.36 Aligned_cols=206 Identities=13% Similarity=0.128 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcC
Q 039062 580 LCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQN 659 (871)
Q Consensus 580 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~ 659 (871)
.+..|+.++..++.. -....+++.+...+. +..+....+..+-.|+... .-..|.+.++|.|...++.
T Consensus 293 Flk~Ls~~ip~fp~r--------v~~~kiLP~L~~el~--n~~~vp~~LP~v~~i~~~~--s~~~~~~~~~p~l~pi~~~ 360 (700)
T KOG2137|consen 293 FLKGLSKLIPTFPAR--------VLFQKILPTLVAELV--NTKMVPIVLPLVLLIAEGL--SQNEFGPKMLPALKPIYSA 360 (700)
T ss_pred HHHHHHHhhccCCHH--------HHHHhhhhHHHHHhc--cccccccccchhhhhhhcc--chhhhhhhhhHHHHHHhcc
Confidence 444455555554422 234556666666553 2233344444444444333 3345677778877777764
Q ss_pred CcchhHHHHHHHHHHHHHHHhh-hcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHH
Q 039062 660 FEEYQVCAVTVGVVGDICRALE-EKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPML 738 (871)
Q Consensus 660 ~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l 738 (871)
.+..+....-+.-+..|.+..+ +++ ...+++.|...+++. +..+.+.++..+..++..+.-.+ .-..++|.+
T Consensus 361 ~~~~~~~l~i~e~mdlL~~Kt~~e~~---~~~IlplL~~S~~~~--~~~iQ~~~L~~lptv~e~iD~~~--vk~~ilP~l 433 (700)
T KOG2137|consen 361 SDPKQALLFILENMDLLKEKTPPEEV---KEKILPLLYRSLEDS--DVQIQELALQILPTVAESIDVPF--VKQAILPRL 433 (700)
T ss_pred CCcccchhhHHhhHHHHHhhCChHHH---HHHHHHHHHHHhcCc--chhhHHHHHHhhhHHHHhccHHH--HHHHHHHHh
Confidence 4333444444444555555554 333 478999999999887 67788889999999888876322 223566666
Q ss_pred HHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCC-CCCHHHHHHHHHH
Q 039062 739 QSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEK-DMDELVMKTAIGL 817 (871)
Q Consensus 739 ~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~r~~a~~~ 817 (871)
....-.+ ....+|.+++.|+..+++.+... .+++.+..+++.. .++..+....+..
T Consensus 434 ~~l~~~t------------t~~~vkvn~L~c~~~l~q~lD~~-----------~v~d~~lpi~~~~~~~dp~iv~~~~~i 490 (700)
T KOG2137|consen 434 KNLAFKT------------TNLYVKVNVLPCLAGLIQRLDKA-----------AVLDELLPILKCIKTRDPAIVMGFLRI 490 (700)
T ss_pred hcchhcc------------cchHHHHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 6553332 12567889999999999776433 2333333332221 2466677777777
Q ss_pred HHHHHhHhcc
Q 039062 818 LGDLADTLGS 827 (871)
Q Consensus 818 l~~i~~~~~~ 827 (871)
+..++..-..
T Consensus 491 ~~~l~~~~~~ 500 (700)
T KOG2137|consen 491 YEALALIIYS 500 (700)
T ss_pred HHHHHhhccc
Confidence 7666654433
No 217
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.88 E-value=0.41 Score=48.23 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=102.6
Q ss_pred hhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhh----h--hhhHhHHHHHHhhhc-------CCcchhHHH
Q 039062 601 FMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDF----A--KYMPDFYKYLEMGLQ-------NFEEYQVCA 667 (871)
Q Consensus 601 ~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~----~--~~l~~i~~~l~~~l~-------~~~~~~v~~ 667 (871)
+..+.+-++|.++.++++.+..+|..++.++..++...+... . ...+.+-+.+..++- ..+...+..
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~ 192 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQ 192 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHH
Confidence 778889999999999999999999999999999998776433 1 122334444444443 134456777
Q ss_pred HHHHHHHHHHHHhh-hcccc---cHHHHH-HHHHHHccCCCC--CCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHH
Q 039062 668 VTVGVVGDICRALE-EKILP---YCDGIM-TQLLKDLSSNQL--HRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQS 740 (871)
Q Consensus 668 ~a~~~l~~l~~~~~-~~~~~---~~~~i~-~~l~~~l~~~~~--~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~ 740 (871)
.+..++-.+++... ..-.+ .+..++ +.++..+..... ...++...+..+..+...+|.....|+..+++.+.+
T Consensus 193 ~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~ 272 (282)
T PF10521_consen 193 AAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQ 272 (282)
T ss_pred HHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 88888888877642 11112 233333 335555544432 366778889999999999999999999999999999
Q ss_pred HHhhc
Q 039062 741 AADLS 745 (871)
Q Consensus 741 ~l~~~ 745 (871)
.+.+-
T Consensus 273 ~l~np 277 (282)
T PF10521_consen 273 ILENP 277 (282)
T ss_pred HhcCC
Confidence 77653
No 218
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.82 E-value=11 Score=44.30 Aligned_cols=182 Identities=14% Similarity=0.191 Sum_probs=120.5
Q ss_pred hhHhHHHHHHhhhcCC---cchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHH
Q 039062 645 YMPDFYKYLEMGLQNF---EEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIAL 721 (871)
Q Consensus 645 ~l~~i~~~l~~~l~~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~ 721 (871)
.+..+.|.+....+++ .+++++.+|.-+++.+.-... .|...-++.|+..+...+ ++.+|.+++-++|+++.
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp-~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSP-SPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCC-Cceeeecchheccchhh
Confidence 4567788887777653 357889999999988755432 234566677777777443 67899999999999999
Q ss_pred hhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHh
Q 039062 722 AIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMY 801 (871)
Q Consensus 722 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 801 (871)
.++.-+.|+-+.++..+. |+ ...+|++++-++..|+-. ..-.++-|+.. +..++
T Consensus 991 ~fpnlie~~T~~Ly~rL~------------D~-----~~~vRkta~lvlshLILn-----dmiKVKGql~e----MA~cl 1044 (1251)
T KOG0414|consen 991 RFPNLIEPWTEHLYRRLR------------DE-----SPSVRKTALLVLSHLILN-----DMIKVKGQLSE----MALCL 1044 (1251)
T ss_pred hcccccchhhHHHHHHhc------------Cc-----cHHHHHHHHHHHHHHHHh-----hhhHhcccHHH----HHHHh
Confidence 999888887777766655 33 368999999999998765 22223444433 34456
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcC--CChhhHHHHHHHHHHHH
Q 039062 802 MEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSS--KDHMIKESAEWARLAIN 866 (871)
Q Consensus 802 ~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~--~~~~~~~~~~~~~~~~~ 866 (871)
.| .+++++..|=.+|..+..-- +.+-..|| +++..+.+- +....+....+-++.|.
T Consensus 1045 ~D--~~~~IsdlAk~FF~Els~k~-n~iynlLP------dil~~Ls~~~l~~~~~~~vm~~li~~ik 1102 (1251)
T KOG0414|consen 1045 ED--PNAEISDLAKSFFKELSSKG-NTIYNLLP------DILSRLSNGNLEEESYKTVMEFLIGLIK 1102 (1251)
T ss_pred cC--CcHHHHHHHHHHHHHhhhcc-cchhhhch------HHHHhhccCcccchhhHHHHHHHHHHhc
Confidence 65 46888888887887777643 33333444 344444422 23455555555555543
No 219
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.76 E-value=0.42 Score=38.17 Aligned_cols=76 Identities=12% Similarity=0.147 Sum_probs=60.4
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhH
Q 039062 176 LTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLA 255 (871)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~ 255 (871)
+...+..+. |+.+.+|..++..+..++.... ......+.++..+...++++|+-+.-.|++++..++..+|....
T Consensus 5 ~~~al~~L~--dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl 79 (92)
T PF10363_consen 5 LQEALSDLN--DPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVL 79 (92)
T ss_pred HHHHHHHcc--CCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHH
Confidence 344555666 7888999999999999987543 12233478999999999999999999999999999998887444
Q ss_pred H
Q 039062 256 P 256 (871)
Q Consensus 256 ~ 256 (871)
+
T Consensus 80 ~ 80 (92)
T PF10363_consen 80 P 80 (92)
T ss_pred H
Confidence 3
No 220
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.75 E-value=4.1 Score=39.06 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=77.4
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 039062 40 LSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKV 119 (871)
Q Consensus 40 ~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i 119 (871)
..+.+++.+.+.+.+-|.=|...||+..... ....+.+...+++...+...+.+++..
T Consensus 6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~----------------------~i~~i~ka~~d~s~llkhe~ay~LgQ~ 63 (289)
T KOG0567|consen 6 ETIGNILVNKSQPLQNRFRALFNLRNLLGPA----------------------AIKAITKAFIDDSALLKHELAYVLGQM 63 (289)
T ss_pred HHHHHHHcCccHHHHHHHHHHHhhhccCChH----------------------HHHHHHHhcccchhhhccchhhhhhhh
Confidence 3455777777778888888888888866421 144556666666666666666665544
Q ss_pred HhhhcCCCCchHHHHHHHHhhcCC--ChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 039062 120 AGIELPQKQWPELIVSLLSNVHQL--PAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAAT 197 (871)
Q Consensus 120 ~~~~~~~~~~~~ll~~L~~~l~~~--~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al 197 (871)
+..+-++.|...+.+. .+.+|+.|-.+|+.+.. ++ .++.+.+..+ |+-..||..+.
T Consensus 64 --------~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~---~~---------~~~~l~k~~~--dp~~~v~ETc~ 121 (289)
T KOG0567|consen 64 --------QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD---PE---------SLEILTKYIK--DPCKEVRETCE 121 (289)
T ss_pred --------ccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc---hh---------hHHHHHHHhc--CCccccchHHH
Confidence 2245677777777665 46789999999987652 22 1222333443 78888888766
Q ss_pred HHHHHh
Q 039062 198 RALYNA 203 (871)
Q Consensus 198 ~~l~~~ 203 (871)
.++..+
T Consensus 122 lAi~rl 127 (289)
T KOG0567|consen 122 LAIKRL 127 (289)
T ss_pred HHHHHH
Confidence 666653
No 221
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.69 E-value=4.3 Score=38.96 Aligned_cols=60 Identities=22% Similarity=0.311 Sum_probs=46.2
Q ss_pred cchHHHHHhhhcC--CChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 039062 366 PLVIPFIEENIAK--PDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRI 437 (871)
Q Consensus 366 ~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~ 437 (871)
|.-+|.+.+.+.+ .++.+|..++.+||.++.. + .++.+...+ .|+.+.||..|..++.-.
T Consensus 217 ~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---~--------~~~vL~e~~-~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 217 PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE---D--------CVEVLKEYL-GDEERVVRESCEVALDML 278 (289)
T ss_pred hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---H--------HHHHHHHHc-CCcHHHHHHHHHHHHHHH
Confidence 5556777666655 6789999999999999873 2 355667788 999999999988876543
No 222
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.69 E-value=0.91 Score=43.77 Aligned_cols=100 Identities=17% Similarity=0.187 Sum_probs=62.6
Q ss_pred hHHhHHHHHHHHHHHHhhcc-cCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCC
Q 039062 727 FEKYLMYAMPMLQSAADLSA-HTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKD 805 (871)
Q Consensus 727 ~~~~~~~i~~~l~~~l~~~~-~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 805 (871)
..||+.++||.+..++-.+. +. ++++.|+ -.+|.-+...+.-.+..++.. ....-+.+...+++.+-|.+
T Consensus 271 vdPY~hqlmPSilTcliakklg~---~p~dhe~-~alRd~AA~ll~yV~~~F~~~-----YktLkPRvtrTllKafLD~~ 341 (450)
T COG5095 271 VDPYLHQLMPSILTCLIAKKLGN---VPDDHEH-YALRDVAADLLKYVFSNFSSS-----YKTLKPRVTRTLLKAFLDRE 341 (450)
T ss_pred ecHHHHHHHHHHHHHHHHHHhcC---CCcchhH-HHHHHHHHHHHHHHHhhhhHh-----hhhhchHHHHHHHHHHHhcc
Confidence 35999999999998886532 11 2222333 478877777777777665443 44445577777777665555
Q ss_pred CCHHHHHHHHHHHHHHHhHhcccc-cccccc
Q 039062 806 MDELVMKTAIGLLGDLADTLGSNA-GSLIQQ 835 (871)
Q Consensus 806 ~~~~~r~~a~~~l~~i~~~~~~~~-~~~l~~ 835 (871)
...+..-.|+.++..+.+..-.-+ .|.+..
T Consensus 342 k~~sT~YGalkgls~l~ke~ir~~i~pn~~~ 372 (450)
T COG5095 342 KTESTQYGALKGLSILSKEVIRTVIKPNADY 372 (450)
T ss_pred cccchhhhhhhhhhhhchhheeeeeccchHH
Confidence 666677777777777766543332 244443
No 223
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.54 E-value=6.5 Score=40.42 Aligned_cols=189 Identities=11% Similarity=0.168 Sum_probs=117.4
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCC----------CCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcc
Q 039062 93 IKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQ----------KQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEV 162 (871)
Q Consensus 93 i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~----------~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~ 162 (871)
+...|+..|..-+-+.|+.++++.+.+.+...+. .+||+++..|+.....++-..- +-..|...+..-
T Consensus 77 ll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~--~g~mlRec~k~e 154 (335)
T PF08569_consen 77 LLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALN--CGDMLRECIKHE 154 (335)
T ss_dssp HHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHH--HHHHHHHHTTSH
T ss_pred HHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccch--HHHHHHHHHhhH
Confidence 3444556666666677777777777777654221 3568899999888876653221 111121111110
Q ss_pred C-CC-ccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhc---ccChhhHHHHHHHHHHhhccCcHHHHH
Q 039062 163 S-PD-VVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQAN---FSNDMERDYIMRVVCEATQSAELKIRQ 237 (871)
Q Consensus 163 ~-~~-~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~---~~~~~~~~~i~~~l~~~l~~~~~~~~~ 237 (871)
. .. .+..+.+ -.+++... .++-+|-.-|+.++..++...... |. ....+.++...-.++.+++-=.|.
T Consensus 155 ~l~~~iL~~~~f----~~ff~~~~--~~~Fdiasdaf~t~~~llt~hk~~~a~fl-~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 155 SLAKIILYSECF----WKFFKYVQ--LPNFDIASDAFSTFKELLTRHKKLVAEFL-SNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp HHHHHHHTSGGG----GGHHHHTT--SSSHHHHHHHHHHHHHHHHSSHHHHHHHH-HHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HHHHHHhCcHHH----HHHHHHhc--CCccHhHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHHHccCCCeEeeh
Confidence 0 00 0111122 23456666 688899999999998876543211 11 112366778888889999999999
Q ss_pred HHHHHHHHHHHH--hHHhhHHhHH--HHHHHHHHHhhCCChhHHHHHHHHHHHHHHH
Q 039062 238 AAFECLVSISST--YYEKLAPYMQ--DIYSITAKAVREDEEPVALQAIEFWSSICDE 290 (871)
Q Consensus 238 ~a~~~l~~l~~~--~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~ 290 (871)
++++.|++++.. ....+..|+. .-+.+++..+++....++..|...+..++..
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 999999999975 4566677775 5788888899999999999999988877664
No 224
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=94.52 E-value=3.8 Score=38.44 Aligned_cols=182 Identities=13% Similarity=0.130 Sum_probs=110.6
Q ss_pred cchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHc
Q 039062 621 ATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEK-ILPYCDGIMTQLLKDL 699 (871)
Q Consensus 621 ~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~i~~~l~~~l 699 (871)
......++.+++.+...+|....+++..++..+.+.-.+.+ ...+..+=.++|...+.+|.. +. +++|.- +
T Consensus 14 ~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~-f~~~~~~e~~lgaAi~amGpe~vL----~~lPLn---l 85 (198)
T PF08161_consen 14 QHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESED-FSFRKELEQVLGAAIRAMGPEQVL----SILPLN---L 85 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCC-cchHHHHHHHHHHHHHHCCHHHHH----HHCCCC---c
Confidence 34567788899999999998888888888888887665554 578888889999999988822 21 112211 1
Q ss_pred cCCCCCCcCCchHHHHHHHHHHh-hccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcc
Q 039062 700 SSNQLHRSVKPPIFSCFGDIALA-IGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFK 778 (871)
Q Consensus 700 ~~~~~~~~v~~~~~~~l~~i~~~-~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~ 778 (871)
..+ ......-.+.+.-+-.+ .+..+.-|.+.++|.....-+...+.....+. ....+-++...-+..++..++
T Consensus 86 ~~~---~~~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~---~~ak~~~~l~~QlWslLP~FC 159 (198)
T PF08161_consen 86 DNA---DDSQPGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKS---VEAKIYETLVQQLWSLLPGFC 159 (198)
T ss_pred cCC---CcCCcccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHHHhHHhc
Confidence 111 11122334444444444 34567777888888776555443210000100 112222456667778888877
Q ss_pred CCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 039062 779 NSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDL 821 (871)
Q Consensus 779 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i 821 (871)
+. +..+...++.+.+.+.+.+.+ ..++|..++..+..+
T Consensus 160 ~~--P~D~~~~F~~~a~~L~~~L~~---~~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 160 NY--PTDLAESFPSFAKLLGNALYD---QPDLRPIICQALRRL 197 (198)
T ss_pred CC--cccHHHHHHHHHHHHHHHHhc---CcchHHHHHHHHHHH
Confidence 65 333444557788888888875 366888877776654
No 225
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.52 E-value=1.6 Score=49.67 Aligned_cols=138 Identities=19% Similarity=0.146 Sum_probs=79.6
Q ss_pred CcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcC-CChhh------hhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 039062 363 DIVPLVIPFIEENIAKPDWRQREAATYAFGSILEG-PSPDK------LLHIVNVALSFMLSALTKDPNNHVKDTTAWTLG 435 (871)
Q Consensus 363 ~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~-~~~~~------~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~ 435 (871)
+.+..+++++..-...++...|.+++.+++.+... |.... ...+++.+...+-... .+.+...+...+++||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~LkaLG 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAV-SKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH-hcCCchheeeHHHhhh
Confidence 34444455444333335678899999999999863 31110 1233333444444444 4556667788899999
Q ss_pred HHhhhhccCCCCCCccchhhHHHHHHHHHHhcc-C---ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHh
Q 039062 436 RIFEFLHGSTIGTPIITQANCQQIITVLLQSMK-D---TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTV 511 (871)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d---~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~ 511 (871)
+++... .++.+...+. + ++.+|..|+++|..++.... . .+-+.++..
T Consensus 472 N~g~~~-----------------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p-----~-------~v~~~l~~i 522 (574)
T smart00638 472 NAGHPS-----------------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP-----R-------KVQEVLLPI 522 (574)
T ss_pred ccCChh-----------------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc-----h-------HHHHHHHHH
Confidence 876432 2233333332 2 46899999999998865432 1 233334444
Q ss_pred hccCChhhhhHHHHHHHHHH
Q 039062 512 THREDAGESRLRTAAYETLN 531 (871)
Q Consensus 512 l~~~~~~~~~vr~~a~~~l~ 531 (871)
+.+... +..+|.+|+..+-
T Consensus 523 ~~n~~e-~~EvRiaA~~~lm 541 (574)
T smart00638 523 YLNRAE-PPEVRMAAVLVLM 541 (574)
T ss_pred HcCCCC-ChHHHHHHHHHHH
Confidence 444443 6689988776654
No 226
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=1.1 Score=48.82 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=107.2
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCC-------CchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccC
Q 039062 91 TQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQK-------QWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVS 163 (871)
Q Consensus 91 ~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~-------~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~ 163 (871)
.-.+..|++.|.-++..||..|+.++-..+-..-|.. ....-+..|..++.++-+.+|-.|...+.++...+
T Consensus 173 rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f- 251 (1005)
T KOG1949|consen 173 RLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF- 251 (1005)
T ss_pred HHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-
Confidence 4566778888999999999999999888876554421 11333456777788888888887777666655544
Q ss_pred CCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 039062 164 PDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECL 243 (871)
Q Consensus 164 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l 243 (871)
.+.+...-+..++..+..-+.- |+..+||-++++++.-++..... ......+++.+-..+++....+|.++++.+
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~-dt~s~VR~svf~gl~~~l~np~s----h~~le~~Lpal~~~l~D~se~VRvA~vd~l 326 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAF-DTSSDVRCSVFKGLPMILDNPLS----HPLLEQLLPALRYSLHDNSEKVRVAFVDML 326 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhh-ccchheehhHhcCcHHHHcCccc----hhHHHHHHHhcchhhhccchhHHHHHHHHH
Confidence 3444333445556666655553 67779999999999886643211 123466778777888999999999999999
Q ss_pred HHHHHH
Q 039062 244 VSISST 249 (871)
Q Consensus 244 ~~l~~~ 249 (871)
..+-..
T Consensus 327 l~ik~v 332 (1005)
T KOG1949|consen 327 LKIKAV 332 (1005)
T ss_pred HHHHhh
Confidence 877654
No 227
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=12 Score=43.06 Aligned_cols=288 Identities=14% Similarity=0.086 Sum_probs=144.7
Q ss_pred HHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHH
Q 039062 430 TAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLL 509 (871)
Q Consensus 430 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~ 509 (871)
++..+|.++...+. .+......-+.|.+.+....++.++..|..|+..++..+.-..+...+....+-++..+-
T Consensus 568 ~ld~I~~~a~~~g~------~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla 641 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMGE------EFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLA 641 (1014)
T ss_pred hhhhhHHHHHHhHH------HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHH
Confidence 34456666666541 222333333444444444447888888999999998876432222333333444455555
Q ss_pred HhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHH
Q 039062 510 TVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQ 589 (871)
Q Consensus 510 ~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 589 (871)
..++... +-.++-..+..+.........+++..+++.++..+..+-.. + .......+.++..
T Consensus 642 ~~L~~~~-----~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~-------~------~~~~~~ll~s~ik 703 (1014)
T KOG4524|consen 642 LRLNTSG-----MSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGY-------S------CLQFFQLLHSIIK 703 (1014)
T ss_pred HHhccCC-----CCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhccc-------c------hhHHHHHHHHHHH
Confidence 5554332 12245556666777777778889999888888877664210 0 0112222333333
Q ss_pred HhCCCCCchhhhhhhHHHHHHHHHHHHccc------Ccchhhh----HHH--HHHHHHHHh-------------------
Q 039062 590 KLGSSEPTKYVFMQYADQIMGLFLRVFACR------SATVHEE----AML--AIGALAYAA------------------- 638 (871)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~------~~~~~~~----a~~--~l~~l~~~~------------------- 638 (871)
.++.....+.......+.....--..++.- .....+. ... -...+....
T Consensus 704 ~~~~~~~~~~il~~~~d~~~~~~~k~l~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~ede 783 (1014)
T KOG4524|consen 704 EMKKKYINDEILGHIADQHISQSTKVLNELPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDE 783 (1014)
T ss_pred HHhhccccchhhHHHHHHHHHHHHHHhhcchhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCcccc
Confidence 322110000000011111111111100000 0000000 000 000000000
Q ss_pred ---hhhhhh-------hhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHH---hhhcccccHHHHHHHHHHHccCCCCC
Q 039062 639 ---GLDFAK-------YMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRA---LEEKILPYCDGIMTQLLKDLSSNQLH 705 (871)
Q Consensus 639 ---~~~~~~-------~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~---~~~~~~~~~~~i~~~l~~~l~~~~~~ 705 (871)
..+..| .+.+|+....+.++ ++...+|..++.++.....- .+..+.|.+.+.=+.++..+... +
T Consensus 784 ns~~~d~ep~~~~qv~iv~kIl~r~~~~LS-~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k--~ 860 (1014)
T KOG4524|consen 784 NSEYTDTEPILPDQVKIVLKILGRGIHLLS-HESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCK--D 860 (1014)
T ss_pred ccCCCCCCCCCChHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcC--c
Confidence 000111 22334444455554 34557888888888754333 33556777777777788887776 5
Q ss_pred CcCCchHHHHHHHHHHhhccChH-HhHHHHHHHHHHHHhh
Q 039062 706 RSVKPPIFSCFGDIALAIGENFE-KYLMYAMPMLQSAADL 744 (871)
Q Consensus 706 ~~v~~~~~~~l~~i~~~~~~~~~-~~~~~i~~~l~~~l~~ 744 (871)
.-+-..|+.|+..++...|+-+. .++..++|.+...+.+
T Consensus 861 ~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 861 PLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 66778899999999999987433 6778888888766654
No 228
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.25 E-value=2.9 Score=43.07 Aligned_cols=227 Identities=13% Similarity=0.095 Sum_probs=114.0
Q ss_pred cCcchhhhHHHHHHHHHHHhhh---hhhhhhH----hHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHH
Q 039062 619 RSATVHEEAMLAIGALAYAAGL---DFAKYMP----DFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGI 691 (871)
Q Consensus 619 ~~~~~~~~a~~~l~~l~~~~~~---~~~~~l~----~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i 691 (871)
++.++.+.++..+..++...+. .|..+-. ..+..+++.+... +..+...|+..+..++...+.........+
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~ 147 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRSEKLVKEA 147 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT--HHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccccchHHHH
Confidence 3556677777777777665542 1111111 1444555555544 668888899999988776654433322345
Q ss_pred HHHHHHHccCCCC--CCcCCchHHHHHHHHHHhhc--cChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHH
Q 039062 692 MTQLLKDLSSNQL--HRSVKPPIFSCFGDIALAIG--ENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGIL 767 (871)
Q Consensus 692 ~~~l~~~l~~~~~--~~~v~~~~~~~l~~i~~~~~--~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~ 767 (871)
++.+++.+.+... +.+....++.+++.+...-. ..|.. ...++.+.+.+...... ... ....+.-.++
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~--~~~----~~~Ql~Y~~l 219 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATN--SNS----SGIQLQYQAL 219 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhccc--CCC----CchhHHHHHH
Confidence 5555555443210 34566778888888875422 12221 45555555555211000 000 1123333344
Q ss_pred HHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccc-cccchHHHHHHHHHH
Q 039062 768 EAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGS-LIQQSLTSKDFLNEC 846 (871)
Q Consensus 768 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~-~l~~~~~v~~~l~~~ 846 (871)
-+++.+- +... ..+.+... .+++.+..++++. ..+.+.+-++.++-+++...++.+.+ .+... +.+++..+
T Consensus 220 l~lWlLS--F~~~-~~~~~~~~--~~i~~L~~i~~~~-~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~--~l~~l~~L 291 (312)
T PF03224_consen 220 LCLWLLS--FEPE-IAEELNKK--YLIPLLADILKDS-IKEKVVRVSLAILRNLLSKAPKSNIELMVLCG--LLKTLQNL 291 (312)
T ss_dssp HHHHHHT--TSHH-HHHHHHTT--SHHHHHHHHHHH---SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHh--cCHH-HHHHHhcc--chHHHHHHHHHhc-ccchHHHHHHHHHHHHHhccHHHHHHHHHHcc--HHHHHHHH
Confidence 4444332 1111 11223221 1778888887763 57788888999999999877665442 23322 45566666
Q ss_pred HcC--CChhhHHHHHHHH
Q 039062 847 LSS--KDHMIKESAEWAR 862 (871)
Q Consensus 847 ~~~--~~~~~~~~~~~~~ 862 (871)
... .|+++.+--.+-.
T Consensus 292 ~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 292 SERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp HSS--SSHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHH
Confidence 533 7888877655543
No 229
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.21 E-value=1.1 Score=46.41 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccch
Q 039062 711 PIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYA 790 (871)
Q Consensus 711 ~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~ 790 (871)
..+..+..+..+-.-.+.+|+-+++|.++.++-...-....+ .+.++.+|+-+.+.+..++..++.. .....
T Consensus 236 ~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~---~~~h~~LRd~AA~ll~~i~~~f~~~-----y~~l~ 307 (343)
T cd08050 236 YLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPP---DDNHWALRDYAARLLAQICRKFSTS-----YNTLQ 307 (343)
T ss_pred HHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCC---CchHHHHHHHHHHHHHHHHHHcCCC-----CCcHH
Confidence 334444444444445678999999999999986542111110 1136999999999999999987654 22235
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 039062 791 PHILQFLDSMYMEKDMDELVMKTAIGLLGDL 821 (871)
Q Consensus 791 ~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i 821 (871)
+.++..+.+.+.|+...-...-.|+..+..+
T Consensus 308 ~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 308 PRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 5788888888887655554444444444443
No 230
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.16 E-value=2.2 Score=43.03 Aligned_cols=168 Identities=15% Similarity=0.092 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHhh--hhhhhhhH---hHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh-hcccccHHHHHHHHHHHc
Q 039062 626 EAMLAIGALAYAAG--LDFAKYMP---DFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE-EKILPYCDGIMTQLLKDL 699 (871)
Q Consensus 626 ~a~~~l~~l~~~~~--~~~~~~l~---~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l 699 (871)
....+++.+.+.+. ..-.+++| .+...+.+++.-.=...|...|+++.+.+.+.++ +.+...+.-..+-|+..+
T Consensus 27 D~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~ 106 (307)
T PF04118_consen 27 DYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLF 106 (307)
T ss_pred HHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHH
Confidence 34555555555554 22223443 4566666676543334688889999999888887 456666666666677777
Q ss_pred cCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccC
Q 039062 700 SSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKN 779 (871)
Q Consensus 700 ~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~ 779 (871)
... ...||...+..+......+|..+.|.+..++..+...+... . .+..+.+.+.+..+...++.
T Consensus 107 ~~a--si~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede------~-------sE~~~~~~~ll~~l~~~v~~ 171 (307)
T PF04118_consen 107 SYA--SIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDE------G-------SEFFDRTLKLLDKLKEAVGD 171 (307)
T ss_pred HHH--HHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccC------C-------chHHHHHHHHHHHHHHhcCh
Confidence 666 56799999999999888888888888888888888777532 1 22334455566666655543
Q ss_pred CccccccccchHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHh
Q 039062 780 SPKTQLLIPYAPHILQFL-DSMYMEKDMDELVMKTAIGLLGDLAD 823 (871)
Q Consensus 780 ~~~~~~~~~~~~~i~~~l-~~~~~~~~~~~~~r~~a~~~l~~i~~ 823 (871)
. .++..+ ..+++ +++.|..|+..+..-.-
T Consensus 172 ~-----------~F~~~lwl~ii~----sp~~Rl~al~~l~~~l~ 201 (307)
T PF04118_consen 172 K-----------YFWQCLWLCIIT----SPSRRLGALNYLLRRLP 201 (307)
T ss_pred h-----------HHHHHHHHHHhc----CcchhHHHHHHHHHhCC
Confidence 2 334333 23333 45578877776654433
No 231
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.03 E-value=9.5 Score=40.33 Aligned_cols=308 Identities=12% Similarity=0.066 Sum_probs=157.8
Q ss_pred hhhHHHHHHHHHHHHHc-----cCCC-cHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC---ChH
Q 039062 402 KLLHIVNVALSFMLSAL-----TKDP-NNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD---TPN 472 (871)
Q Consensus 402 ~~~~~l~~i~~~l~~~l-----~~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d---~~~ 472 (871)
.+.+.++.++..+...+ ..|| +.++-..|++++|.+..+..-. .....++..-++...+..+.+ +..
T Consensus 32 ~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~----~~l~~d~~~~~i~~~i~~l~~~~~~K~ 107 (372)
T PF12231_consen 32 ALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV----STLSDDFASFIIDHSIESLQNPNSPKS 107 (372)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH----hhCChHHHHHHHHHHHHHHcCCCCCHH
Confidence 34555666666665555 1233 6677888999998877543200 012233444577777777764 234
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhcc-CChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 039062 473 VAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHR-EDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPV 551 (871)
Q Consensus 473 v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~-~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~ 551 (871)
+.....++|.. +++ +...+.......+-..+..+.+ .. ...+-...+.++..++...|..+......-+|.
T Consensus 108 i~~~~l~~ls~--Q~f----~~~~~~~~~~~~l~~~l~~i~~~~~--s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~ 179 (372)
T PF12231_consen 108 ICTHYLWCLSD--QKF----SPKIMTSDRVERLLAALHNIKNRFP--SKSIISERLNIYKRLLSQFPQQMIKHADIWFPI 179 (372)
T ss_pred HHHHHHHHHHc--CCC----CCcccchhhHHHHHHHHHHhhccCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555531 222 2344444444333333333332 22 345667889999999999998887777777777
Q ss_pred HHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCc--chhhhHHH
Q 039062 552 IMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSA--TVHEEAML 629 (871)
Q Consensus 552 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~--~~~~~a~~ 629 (871)
++..+-... ..++..+..+...+...++++ ..+...+...++.... .+.+....
T Consensus 180 l~~~l~~~~-------------k~ir~~a~~l~~~~~~~l~~~-----------~~~s~~~~~~~~~~~~~~~~~~~~~~ 235 (372)
T PF12231_consen 180 LFPDLLSSA-------------KDIRTKAISLLLEAKKCLGPN-----------KELSKSVLEDLQRSLENGKLIQLYCE 235 (372)
T ss_pred HHHHHhhcc-------------hHHHHHHHHHHHHHHHHhChh-----------HHHHHHHHHHhccccccccHHHHHHH
Confidence 776654321 134555666665555555543 1112222222222100 22222222
Q ss_pred HHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCC
Q 039062 630 AIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVK 709 (871)
Q Consensus 630 ~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~ 709 (871)
-+..+...- +-.++.++++..++..+.+.- -+-.++++.++...-.+++++ +..+|
T Consensus 236 ~L~~mi~~~--~~~~~a~~iW~~~i~LL~~~~--------------------~~~w~~~n~wL~v~e~cFn~~--d~~~k 291 (372)
T PF12231_consen 236 RLKEMIKSK--DEYKLAMQIWSVVILLLGSSR--------------------LDSWEHLNEWLKVPEKCFNSS--DPQVK 291 (372)
T ss_pred HHHHHHhCc--CCcchHHHHHHHHHHHhCCch--------------------hhccHhHhHHHHHHHHHhcCC--CHHHH
Confidence 233332211 112334444444444443210 012234566666666677766 56777
Q ss_pred chHHHHHHHHHHhhccC---hHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhc
Q 039062 710 PPIFSCFGDIALAIGEN---FEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGF 777 (871)
Q Consensus 710 ~~~~~~l~~i~~~~~~~---~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~ 777 (871)
..|+.+-..++-....+ ....+.-+..++...+.... .+. ....++..++..++.++...
T Consensus 292 ~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~----~~~----~~~~~~~~ll~~l~~lly~~ 354 (372)
T PF12231_consen 292 IQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREK----SSK----TKEEVWWYLLYSLCNLLYYA 354 (372)
T ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccc----ccc----ccHHHHHHHHHHHhchHHHH
Confidence 77777777766644332 22344444445544444321 010 01267777888887777654
No 232
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=93.98 E-value=8 Score=39.32 Aligned_cols=257 Identities=11% Similarity=0.160 Sum_probs=129.5
Q ss_pred ChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchH
Q 039062 52 PVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPE 131 (871)
Q Consensus 52 ~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ 131 (871)
....+++|+.++-+++++ |+.+..+.. ++-+.+..+.+-.||++|..-+-.+++.+ ..+.
T Consensus 37 ~~k~k~lasq~ip~~fk~------------fp~la~~a~----da~~d~~ed~d~~ir~qaik~lp~fc~~d----~~~r 96 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKH------------FPSLADEAI----DAQLDLCEDDDVGIRRQAIKGLPLFCKGD----ALSR 96 (460)
T ss_pred chHHHHHHHHHHHHHHhh------------CchhhhHHH----HhhhccccccchhhHHHHHhccchhccCc----hhhh
Confidence 467788999999888763 444443322 23345566667788888777666666553 2233
Q ss_pred HHHHHHHhh------------cCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 039062 132 LIVSLLSNV------------HQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRA 199 (871)
Q Consensus 132 ll~~L~~~l------------~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~ 199 (871)
..+.|.+++ ...++.+|+.++..+..=.-.+.++.+..+.-..++..+.+.+. |...+=-...++.
T Consensus 97 v~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~--dVtgeef~lfm~~ 174 (460)
T KOG2213|consen 97 VNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALE--DVTGEEFTLFMDI 174 (460)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHH--hccHHHHHHHHHH
Confidence 333333332 22366788888877765333333566644444566777777777 5554433445555
Q ss_pred HHHhhhcchhcccChhhHHHHHHH---HHHh--hccCcHHHHHHHHHHHHHHHHHhH-----HhhHHhHH-HHHHHHHHH
Q 039062 200 LYNALSFAQANFSNDMERDYIMRV---VCEA--TQSAELKIRQAAFECLVSISSTYY-----EKLAPYMQ-DIYSITAKA 268 (871)
Q Consensus 200 l~~~~~~~~~~~~~~~~~~~i~~~---l~~~--l~~~~~~~~~~a~~~l~~l~~~~~-----~~~~~~~~-~l~~~~~~~ 268 (871)
|+++-.+.... .+.....+.+. +-.. ....|++....-+.|+..-+-.+. ..+..|+. .+++ .
T Consensus 175 L~~lk~~~~k~--~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip----~ 248 (460)
T KOG2213|consen 175 LASLKSLQTKA--GEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIP----H 248 (460)
T ss_pred HHhhhcccCCC--CHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcc----c
Confidence 55543221110 01111112111 1111 344577777777777765443221 11222221 1222 1
Q ss_pred hhC-CChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhH
Q 039062 269 VRE-DEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAM 347 (871)
Q Consensus 269 ~~~-~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~ 347 (871)
-.+ ..++.+ ++++..+++..... ..+-.+..+|.++..|...|-..++.+ + ...
T Consensus 249 ~fdkl~e~rk---L~lLK~lAEMss~t---------------taq~a~q~Lpsi~elLk~yMpa~kt~e---e----~~f 303 (460)
T KOG2213|consen 249 HFDKLTEERK---LDLLKALAEMSSYT---------------TAQAARQMLPSIVELLKEYMPAPKTGE---E----MQF 303 (460)
T ss_pred ccccchHHHH---HHHHHHHHHhCccc---------------hHHHHHHHHHHHHHHHHHhcccCCccH---H----HHH
Confidence 111 112333 45555666532111 124466777888888877765442221 1 222
Q ss_pred HHHHHHHHHHHHcC
Q 039062 348 AGGTCLGLVARTVG 361 (871)
Q Consensus 348 ~a~~~l~~l~~~~~ 361 (871)
...+|+..+-..+|
T Consensus 304 syvEClly~~h~Lg 317 (460)
T KOG2213|consen 304 SYVECLLYALHHLG 317 (460)
T ss_pred HHHHHHHHHHHHHh
Confidence 33566665555554
No 233
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.85 E-value=9.1 Score=39.48 Aligned_cols=203 Identities=10% Similarity=0.093 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 039062 36 PSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQV 115 (871)
Q Consensus 36 ~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~ 115 (871)
+.+...+.+++.... .++.-+....++-.++....+.. ..+..-....++..-...+..|.+.+..+-.+.+.+
T Consensus 64 ~~~v~~fi~LlS~~~-kdd~v~yvL~li~DmLs~d~sr~-----~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~I 137 (442)
T KOG2759|consen 64 AQYVKTFINLLSHID-KDDTVQYVLTLIDDMLSEDRSRV-----DLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRI 137 (442)
T ss_pred HHHHHHHHHHhchhh-hHHHHHHHHHHHHHHHhhCchHH-----HHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHH
Confidence 466667777776644 34445566767766665332211 111111111222223346777888888888889999
Q ss_pred HHHHHhhhc---CCCCchHHHHHHHHhhcC-CChHHHHHHHHHHHHHhhccC-C-CccchhhHHHHHHHHHhhhcCCCCC
Q 039062 116 IAKVAGIEL---PQKQWPELIVSLLSNVHQ-LPAHVKQATLETLGYLCEEVS-P-DVVEQDHVNKILTAVVQGMNASEMN 189 (871)
Q Consensus 116 l~~i~~~~~---~~~~~~~ll~~L~~~l~~-~~~~~r~~al~~l~~l~~~~~-~-~~~~~~~~~~i~~~l~~~l~~~~~~ 189 (871)
++.++...- +.....-....|...+++ .+..-+..+.+||+.+...-. . ......-...+++.+. ++..+
T Consensus 138 ls~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~----s~~~~ 213 (442)
T KOG2759|consen 138 LSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA----STKCG 213 (442)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh----ccCcc
Confidence 999987641 111223344555555555 455667788889988766420 0 0111112222333332 33678
Q ss_pred HHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccC-cHHHHHHHHHHHHHHHHHh
Q 039062 190 NDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSA-ELKIRQAAFECLVSISSTY 250 (871)
Q Consensus 190 ~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~ 250 (871)
.+++...+-|+=.+. |.+..- ...-.-.+++.+...+.+. -+++-.-++..+..++...
T Consensus 214 ~QlQYqsifciWlLt-Fn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~ 273 (442)
T KOG2759|consen 214 FQLQYQSIFCIWLLT-FNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG 273 (442)
T ss_pred hhHHHHHHHHHHHhh-cCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 888877777665543 222111 0000112444555544421 2344444455555555443
No 234
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.76 E-value=15 Score=41.85 Aligned_cols=168 Identities=18% Similarity=0.186 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhcc----CcHHHHHHHHHHHHHHHHHhHHh--------hHHhHHHHHHHHHHHhhCCChhHHHHHHHHHH
Q 039062 218 DYIMRVVCEATQS----AELKIRQAAFECLVSISSTYYEK--------LAPYMQDIYSITAKAVREDEEPVALQAIEFWS 285 (871)
Q Consensus 218 ~~i~~~l~~~l~~----~~~~~~~~a~~~l~~l~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~ 285 (871)
..+++.+++++.+ +.+.++..++-.++.++..+... ...+++.+.+.+-.+....+.+-+..++..++
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 4455556565543 35678889999999888753221 12222333333333333344444444455544
Q ss_pred HHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcc
Q 039062 286 SICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIV 365 (871)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 365 (871)
.++. +..++.+...+. .+.. ..-.+|.+|..+|..++...+..+.
T Consensus 472 N~g~-----------------------------~~~i~~l~~~l~-~~~~-----~~~~iR~~Av~Alr~~a~~~p~~v~ 516 (574)
T smart00638 472 NAGH-----------------------------PSSIKVLEPYLE-GAEP-----LSTFIRLAAILALRNLAKRDPRKVQ 516 (574)
T ss_pred ccCC-----------------------------hhHHHHHHHhcC-CCCC-----CCHHHHHHHHHHHHHHHHhCchHHH
Confidence 4322 112233332222 1111 1136899999999999988888777
Q ss_pred cchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHH
Q 039062 366 PLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAW 432 (871)
Q Consensus 366 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~ 432 (871)
+.+++..... +.+..+|.+|+.++- ..- |. ...+..+...+..+++..|+.....
T Consensus 517 ~~l~~i~~n~--~e~~EvRiaA~~~lm---~t~-P~------~~~l~~ia~~l~~E~~~QV~sfv~S 571 (574)
T smart00638 517 EVLLPIYLNR--AEPPEVRMAAVLVLM---ETK-PS------VALLQRIAELLNKEPNLQVASFVYS 571 (574)
T ss_pred HHHHHHHcCC--CCChHHHHHHHHHHH---hcC-CC------HHHHHHHHHHHhhcCcHHHHHHhHH
Confidence 7777776432 345678999765443 321 11 1123333333326777777765543
No 235
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.74 E-value=0.98 Score=46.05 Aligned_cols=133 Identities=9% Similarity=0.099 Sum_probs=105.0
Q ss_pred HHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh-hccccc
Q 039062 609 MGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE-EKILPY 687 (871)
Q Consensus 609 ~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~ 687 (871)
+..++..+...+..+|..|+.-+..+..........++..+++.+.....|. +..+|...+.++..++.... +.+.|+
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDD-DSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcchhhhcch
Confidence 4455666777788999999999998888755555556667777777777655 44899999988888655544 668899
Q ss_pred HHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhh
Q 039062 688 CDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADL 744 (871)
Q Consensus 688 ~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~ 744 (871)
+.-+++.+...+.+. ..+++..++..+..++..+++.|..+...+++.+...+..
T Consensus 139 ~~l~~~yi~~AMThi--t~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~ 193 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHI--TPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISK 193 (393)
T ss_pred HHHHHHHHHHHHhhc--cHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 999999999998877 6889999999999999999998888877777776665544
No 236
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=93.65 E-value=0.26 Score=53.71 Aligned_cols=186 Identities=16% Similarity=0.123 Sum_probs=112.4
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCH-HHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 039062 37 SFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDA-NVKTQIKTCLLNTLTSTVADARSTSSQV 115 (871)
Q Consensus 37 ~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~ll~~l~~~~~~vr~~~a~~ 115 (871)
.++..+++++..+ +.++|..-+..+-+++. .+++ .....|...+..++.+.++.+|.+...+
T Consensus 330 ~i~p~l~kLF~~~--Dr~iR~~LL~~i~~~i~---------------~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlks 392 (690)
T KOG1243|consen 330 RIIPVLLKLFKSP--DRQIRLLLLQYIEKYID---------------HLTKQILNDQIFPHVALGFLDTNATLREQTLKS 392 (690)
T ss_pred chhhhHHHHhcCc--chHHHHHHHHhHHHHhh---------------hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHH
Confidence 3556666666643 55666554444444333 2443 3345677777777888888888877777
Q ss_pred HHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHH
Q 039062 116 IAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLA 195 (871)
Q Consensus 116 l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~ 195 (871)
+..++...-++.--.+++..+-..-.+.....|-....|++.+.....+.. .-..+..++...+. |+-..-|.+
T Consensus 393 m~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralk--dpf~paR~a 466 (690)
T KOG1243|consen 393 MAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALK--DPFVPARKA 466 (690)
T ss_pred HHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhc--CCCCCchhh
Confidence 777777653322334566666554444445566666667766655442111 11122233444555 666677778
Q ss_pred HHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Q 039062 196 ATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISST 249 (871)
Q Consensus 196 al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 249 (871)
++..+....++ +...+....+++.+.....+++..+|..+...+......
T Consensus 467 ~v~~l~at~~~----~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 467 GVLALAATQEY----FDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEK 516 (690)
T ss_pred hhHHHhhcccc----cchhhhhhhccccccccccCcccchhhHHHHHHHHHHhh
Confidence 77777664443 333334466788888888888899999999888877655
No 237
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.53 E-value=0.94 Score=36.19 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=64.0
Q ss_pred HHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCcc
Q 039062 372 IEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPII 451 (871)
Q Consensus 372 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 451 (871)
....++|+..-+|-.|+..+..+.+... ......+.++..++..+ +|+++.|--+|+.++..++...+
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L-~d~DsyVYL~aI~~L~~La~~~p--------- 75 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQL-KDEDSYVYLNAIKGLAALADRHP--------- 75 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHc-CCCCchHHHHHHHHHHHHHHHCh---------
Confidence 4456688888899999999999998742 23445688999999999 99999999999999999998875
Q ss_pred chhhHHHHHHHHHHhcc
Q 039062 452 TQANCQQIITVLLQSMK 468 (871)
Q Consensus 452 ~~~~~~~il~~l~~~l~ 468 (871)
..+++.|++...
T Consensus 76 -----~~vl~~L~~~y~ 87 (92)
T PF10363_consen 76 -----DEVLPILLDEYA 87 (92)
T ss_pred -----HHHHHHHHHHHh
Confidence 246666665443
No 238
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=93.53 E-value=11 Score=39.50 Aligned_cols=152 Identities=12% Similarity=0.149 Sum_probs=95.8
Q ss_pred CCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCC--ccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhh
Q 039062 127 KQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPD--VVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNAL 204 (871)
Q Consensus 127 ~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~--~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (871)
-.|..+.+.+...+-+++..+|.+|++++.++.... .. .+.+-+.+.+ +...+..+.....=|..|++.+..++
T Consensus 21 ~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~---ii~SL~~~~~~~~ER~QALkliR~~l 96 (371)
T PF14664_consen 21 LVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIF---IIRSLDRDNKNDVEREQALKLIRAFL 96 (371)
T ss_pred hhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchh---hHhhhcccCCChHHHHHHHHHHHHHH
Confidence 478888888887666666889999999999987753 11 1101122222 23344432345556889999999998
Q ss_pred hcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHH--hHHHHHHHHHHHhhCCChhHHHHHHH
Q 039062 205 SFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAP--YMQDIYSITAKAVREDEEPVALQAIE 282 (871)
Q Consensus 205 ~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~a~~ 282 (871)
...... ...-..++..+.....+++...|..|++++.+++-..|+.+.. -+..+++ .+.+...++....+.
T Consensus 97 ~~~~~~---~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~----~l~d~~~~~~~~l~~ 169 (371)
T PF14664_consen 97 EIKKGP---KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLR----ALIDGSFSISESLLD 169 (371)
T ss_pred HhcCCc---ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHH----HHHhccHhHHHHHHH
Confidence 763211 1122567888888888889999999999999999888776432 2333444 444333334334444
Q ss_pred HHHHHHH
Q 039062 283 FWSSICD 289 (871)
Q Consensus 283 ~~~~l~~ 289 (871)
.+..+.+
T Consensus 170 ~lL~lLd 176 (371)
T PF14664_consen 170 TLLYLLD 176 (371)
T ss_pred HHHHHhC
Confidence 4444433
No 239
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=93.35 E-value=11 Score=38.90 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=89.3
Q ss_pred cchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH-HHHHHHHHHHc----cCCCcHHHHHHHHHHHHHHhhh
Q 039062 366 PLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV-NVALSFMLSAL----TKDPNNHVKDTTAWTLGRIFEF 440 (871)
Q Consensus 366 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l-~~i~~~l~~~l----~~d~~~~vr~~a~~~l~~~~~~ 440 (871)
|.++.++..++.|.+-...-++..++|.+++.- +.....+ +++++.++..+ ..|.+-+++.+++.+|.++.--
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D--~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP 391 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRD--DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP 391 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc
Confidence 568888999999988888999999999999852 2222222 35566666555 1356778889999998887654
Q ss_pred hccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhh
Q 039062 441 LHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGE 519 (871)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~ 519 (871)
.+ ......-..+.++++..++- .|.|.-.-...+.-+.++.+.- ...+... +.++..+..-.+++|.
T Consensus 392 v~-------nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~--a~eL~kn-~~l~ekLv~Wsks~D~-- 459 (604)
T KOG4500|consen 392 VS-------NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYI--ACELAKN-PELFEKLVDWSKSPDF-- 459 (604)
T ss_pred CC-------chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHH--HHHHhcC-HHHHHHHHHhhhCCcc--
Confidence 32 11111112466667777764 5666555555555444321100 0000000 3455566666555542
Q ss_pred hhHHHHHHHHHHHHHHh
Q 039062 520 SRLRTAAYETLNEVVRS 536 (871)
Q Consensus 520 ~~vr~~a~~~l~~l~~~ 536 (871)
..+--.....+..++++
T Consensus 460 aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 460 AGVAGESNRLLLGLIKH 476 (604)
T ss_pred chhhhhhhHHHHHHHHh
Confidence 22333444455555554
No 240
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=93.11 E-value=0.38 Score=43.20 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHH
Q 039062 187 EMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITA 266 (871)
Q Consensus 187 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~ 266 (871)
|...++|++|.+|++.++....... ....+++.+...+.+ +.+++.-++..+..++...|..+.+.++.+++.+-
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~----~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~ 112 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRI----DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLR 112 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-----HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 5678999999999999987543322 235678888888887 89999999999999999999988888777766555
Q ss_pred HHh
Q 039062 267 KAV 269 (871)
Q Consensus 267 ~~~ 269 (871)
..+
T Consensus 113 ~~L 115 (169)
T PF08623_consen 113 KTL 115 (169)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 241
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.09 E-value=9.3 Score=37.27 Aligned_cols=197 Identities=15% Similarity=0.166 Sum_probs=106.6
Q ss_pred cCCCHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHH
Q 039062 13 QSIDGTVRKHAEESLKQFQEQN---LPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANV 89 (871)
Q Consensus 13 ~s~~~~~r~~A~~~L~~~~~~~---~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~ 89 (871)
...+++.....-+.|-++...+ .+-++..+......+ ....+.++..++-...+..+ ..| +..
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~--~~~~~~~~~rLl~~lw~~~~--------r~f----~~L 76 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQG--SLELRYVALRLLTLLWKAND--------RHF----PFL 76 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCC--chhHHHHHHHHHHHHHHhCc--------hHH----HHH
Confidence 4467888888888887766552 234555554444432 33444555555544333211 111 222
Q ss_pred HHHHHHHHHHh---hcCCc--hHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhh-cCCChHHHHHHHHHHHHHhhccC
Q 039062 90 KTQIKTCLLNT---LTSTV--ADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNV-HQLPAHVKQATLETLGYLCEEVS 163 (871)
Q Consensus 90 ~~~i~~~ll~~---l~~~~--~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l-~~~~~~~r~~al~~l~~l~~~~~ 163 (871)
+..+....++. ..+.+ .+.....+..+..+++.. | +.|+++++.+..++ .+.++..+..+++.+..+|+.-
T Consensus 77 ~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~-p-~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~- 153 (234)
T PF12530_consen 77 QPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSR-P-DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE- 153 (234)
T ss_pred HHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhC-h-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh-
Confidence 22233322221 12222 455566677888888876 7 49999999999999 7778889999999999999643
Q ss_pred CCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcch-hcccChhhHHHHHHHHHHhhccCcH
Q 039062 164 PDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQ-ANFSNDMERDYIMRVVCEATQSAEL 233 (871)
Q Consensus 164 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~-~~~~~~~~~~~i~~~l~~~l~~~~~ 233 (871)
.+ .+......+.+.+.. +..+.+-+.-...+.-+ .... +.-..+.....++..+.+.....+.
T Consensus 154 --vv---d~~s~w~vl~~~l~~-~~rp~v~~~l~~l~~l~-~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 154 --VV---DFYSAWKVLQKKLSL-DYRPLVLKSLCSLFALV-PQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred --hc---cHHHHHHHHHHhcCC-ccchHHHHHHHHHHHHh-ccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 22 122222333333432 55666554433333321 1111 1111122335567777777665553
No 242
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=92.38 E-value=9.6 Score=40.01 Aligned_cols=224 Identities=15% Similarity=0.098 Sum_probs=130.4
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHH---------HHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhh
Q 039062 11 NAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSG---------ELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQR 81 (871)
Q Consensus 11 ~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~---------il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~ 81 (871)
.++++++++|..|.+-+.-+-.+ +.++..+.+ -+..++.....|.-|..+.|..+..+. .
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~---------~ 101 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK---------G 101 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC---------C
Confidence 57788899999999999776665 555554443 133334457788889989888875321 1
Q ss_pred ccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCC-CCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhh
Q 039062 82 WLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQ-KQWPELIVSLLSNVHQLPAHVKQATLETLGYLCE 160 (871)
Q Consensus 82 ~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~-~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~ 160 (871)
-..++ ..+...++....+++...|..+-+++..++-.. |. -.+-+-+..|.+.+.++....-+..+.++-++.+
T Consensus 102 ~~~~~----~~vvralvaiae~~~D~lr~~cletL~El~l~~-P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 102 PKEIP----RGVVRALVAIAEHEDDRLRRICLETLCELALLN-PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD 176 (371)
T ss_pred cccCC----HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC-HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence 11233 456667778888888899999999999998765 31 0112223444554444443455556666666655
Q ss_pred ccC-CCccc-hhhHHHHHHHHHhhh-cCCCCCH--HHHHHHHHHHHHhhhcchhcc--cChhhHHHHHHHHHHhhccCcH
Q 039062 161 EVS-PDVVE-QDHVNKILTAVVQGM-NASEMNN--DVRLAATRALYNALSFAQANF--SNDMERDYIMRVVCEATQSAEL 233 (871)
Q Consensus 161 ~~~-~~~~~-~~~~~~i~~~l~~~l-~~~~~~~--~vr~~al~~l~~~~~~~~~~~--~~~~~~~~i~~~l~~~l~~~~~ 233 (871)
.-. ...+. ...++.++..+...- .....+. +.-..+.+++..++...++.+ .... -.-+..+...+..+.+
T Consensus 177 ~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~--~~~lksLv~~L~~p~~ 254 (371)
T PF14664_consen 177 SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND--FRGLKSLVDSLRLPNP 254 (371)
T ss_pred CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC--chHHHHHHHHHcCCCH
Confidence 421 11111 123455555555441 0001222 233344444544443222221 1111 1346667788888999
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 039062 234 KIRQAAFECLVSISSTYYE 252 (871)
Q Consensus 234 ~~~~~a~~~l~~l~~~~~~ 252 (871)
++|...++.+..+....+.
T Consensus 255 ~ir~~Ildll~dllrik~p 273 (371)
T PF14664_consen 255 EIRKAILDLLFDLLRIKPP 273 (371)
T ss_pred HHHHHHHHHHHHHHCCCCC
Confidence 9999999999998876444
No 243
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.01 E-value=2.9 Score=44.36 Aligned_cols=153 Identities=18% Similarity=0.130 Sum_probs=96.5
Q ss_pred hhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHh-hcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 039062 100 TLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSN-VHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTA 178 (871)
Q Consensus 100 ~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~-l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~ 178 (871)
.+.+.++.+|-.-+-.++.-.. + ..-...+..++.. +++.++++|.+|.-+++-+|-.- ++ .+...
T Consensus 524 ll~d~ds~lRy~G~fs~alAy~---G-Tgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-~~-----~lv~t--- 590 (926)
T COG5116 524 LLYDKDSILRYNGVFSLALAYV---G-TGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-RD-----LLVGT--- 590 (926)
T ss_pred HhcCchHHhhhccHHHHHHHHh---c-CCcchhHhhhheeecccCchHHHHHHHHheeeeEecC-cc-----hhhHH---
Confidence 3444556666544433333222 2 2334566666665 56678889999999888766543 22 22233
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhH
Q 039062 179 VVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYM 258 (871)
Q Consensus 179 l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 258 (871)
++.+.. .-+..||....-+|+-.....+. ..-.+++-.+..++..-+|+.|+-.+.-+.-.+.+.+.|.+
T Consensus 591 -velLs~-shN~hVR~g~AvaLGiacag~G~--------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v 660 (926)
T COG5116 591 -VELLSE-SHNFHVRAGVAVALGIACAGTGD--------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV 660 (926)
T ss_pred -HHHhhh-ccchhhhhhhHHHhhhhhcCCcc--------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH
Confidence 333432 46778888777777664432221 23345555666777888999999999988888888888888
Q ss_pred HHHHHHHHHHhhCCChh
Q 039062 259 QDIYSITAKAVREDEEP 275 (871)
Q Consensus 259 ~~l~~~~~~~~~~~~~~ 275 (871)
..+..-+.+.+.+..++
T Consensus 661 ~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 661 KRIIKKFNRVIVDKHES 677 (926)
T ss_pred HHHHHHHHHHHhhhhHh
Confidence 88888888777665543
No 244
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.76 E-value=4.8 Score=41.48 Aligned_cols=184 Identities=11% Similarity=0.033 Sum_probs=88.8
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 039062 519 ESRLRTAAYETLNEVVRSSTDETAPMVLQ--------LVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQK 590 (871)
Q Consensus 519 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--------ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 590 (871)
+..+...++..++.++...+.. .+.+.. ...++++.++. .|. .+...++..++.++..
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~-~~~~~~~~~~~~~~~~~~fl~ll~~--------~D~-----~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSR-VELFLELAKQDDSDPYSPFLKLLDR--------NDS-----FIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSS-HHHHHHHHH-TTH--HHHHHHH-S---------SSH-----HHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHhcCHHH-HHHHHHhcccccchhHHHHHHHhcC--------CCH-----HHHHHHHHHHHHHHHc
Confidence 3456778888899988887732 222221 34445554432 122 2445577777777665
Q ss_pred hCCCCCchhhhhhhHHHHHHHHHHHHcc----cCcchhhhHHHHHHHHHHHhh--hhhhhhhHhHHHHHHhhh------c
Q 039062 591 LGSSEPTKYVFMQYADQIMGLFLRVFAC----RSATVHEEAMLAIGALAYAAG--LDFAKYMPDFYKYLEMGL------Q 658 (871)
Q Consensus 591 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~----~~~~~~~~a~~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l------~ 658 (871)
-+.. .......+++.++..+.+ ++.+++..++.+++.+++.-. ..|.. ...++.+...+ .
T Consensus 136 ~~~~------~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~~ 207 (312)
T PF03224_consen 136 GPKR------SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATNS 207 (312)
T ss_dssp TTT--------HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH------
T ss_pred CCcc------ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhcccC
Confidence 4433 222123445555555543 455677888888888874322 22221 44555555555 2
Q ss_pred CCcchhHHHHHH---HHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChH
Q 039062 659 NFEEYQVCAVTV---GVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFE 728 (871)
Q Consensus 659 ~~~~~~v~~~a~---~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~ 728 (871)
+....++...++ |++.--....+.-...+ +++.+.+.++... ...+-+-++.++-++.......+.
T Consensus 208 ~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~-KEKvvRv~la~l~Nl~~~~~~~~~ 276 (312)
T PF03224_consen 208 NSSGIQLQYQALLCLWLLSFEPEIAEELNKKY---LIPLLADILKDSI-KEKVVRVSLAILRNLLSKAPKSNI 276 (312)
T ss_dssp ---HHHHHHHHHHHHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH---SHHHHHHHHHHHHHTTSSSSTTHH
T ss_pred CCCchhHHHHHHHHHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcc-cchHHHHHHHHHHHHHhccHHHHH
Confidence 333344444333 33321111111212222 7788888777653 233445567777777766655433
No 245
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=19 Score=43.92 Aligned_cols=224 Identities=13% Similarity=0.108 Sum_probs=129.0
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHh
Q 039062 178 AVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPY 257 (871)
Q Consensus 178 ~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 257 (871)
.+++.+. ..++..|..|+..++.++.-.+..... ...+.....+.+++.+.+..+|....+.+..++......+.||
T Consensus 45 ~I~kkL~--KkD~~TK~KaL~eL~eli~~~~~e~~~-~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 45 IIVKKLL--KRDETTKIKALQELSELIDTSDTEELK-GILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHh--ccChHHHHHHHHhHHHhcccccchHHh-hhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3444444 578889999999999987643221100 1123445566777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCc-
Q 039062 258 MQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQ- 336 (871)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~- 336 (871)
++.++++.+-...+.+..+...|...+......+.. ++.....-+.+.+.+.+.+.....+.
T Consensus 122 LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~-----------------~~v~~~c~~~i~~~~~~~~~~~~~~sl 184 (1312)
T KOG0803|consen 122 LKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKD-----------------RHVWFKCDPEIFYLVTEILVKETPDSL 184 (1312)
T ss_pred HHhhhhhhhheecccchHHHHHHHHHHHhhcChhhh-----------------HHHHHHhhHHHHHHHHHHHhccCcccc
Confidence 999999888888888777777666554333221100 11111112344455444433211111
Q ss_pred c------cccccc---cHhHHHHHHHHHHHHHcCCC--cc---cc-----hHHHHHhhhcCCChhhHHHHHHHHHHhhcC
Q 039062 337 D------QEEGAW---NIAMAGGTCLGLVARTVGDD--IV---PL-----VIPFIEENIAKPDWRQREAATYAFGSILEG 397 (871)
Q Consensus 337 ~------~~~~~~---~~r~~a~~~l~~l~~~~~~~--~~---~~-----l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 397 (871)
. .++.+. ++-..+..++..+....|+. .. +. --+.+-..+.+..+.+|.+...++..+...
T Consensus 185 Sd~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~ 264 (1312)
T KOG0803|consen 185 SDLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDD 264 (1312)
T ss_pred chhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhh
Confidence 1 111111 33334445555555444422 11 11 112233445566778888888888888887
Q ss_pred CChhh-hhHHHHHHHHHHHHHccCCCc
Q 039062 398 PSPDK-LLHIVNVALSFMLSALTKDPN 423 (871)
Q Consensus 398 ~~~~~-~~~~l~~i~~~l~~~l~~d~~ 423 (871)
. +.. +......+-+.+.... .+.+
T Consensus 265 i-~~~~~~~~~~~l~~~~~~~~-~~~d 289 (1312)
T KOG0803|consen 265 I-LNRVMESEKNYLKPVLLGSI-DSLD 289 (1312)
T ss_pred h-HHhcchhhhhHhhHHHHccc-cccc
Confidence 5 233 3333334445555555 4444
No 246
>PF05536 Neurochondrin: Neurochondrin
Probab=91.65 E-value=26 Score=39.11 Aligned_cols=185 Identities=14% Similarity=0.101 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHH
Q 039062 474 AEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMV-LQLVPVI 552 (871)
Q Consensus 474 ~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l 552 (871)
+.-|...|..|+. .+ .-.-.|-+-.-++.+++.+.+.+ +..+...++.+|..++.+ ++.....+ ...++.+
T Consensus 74 ~~LavsvL~~f~~--~~---~~a~~~~~~~~IP~Lle~l~~~s--~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L 145 (543)
T PF05536_consen 74 LSLAVSVLAAFCR--DP---ELASSPQMVSRIPLLLEILSSSS--DLETVDDALQCLLAIASS-PEGAKALLESGAVPAL 145 (543)
T ss_pred HHHHHHHHHHHcC--Ch---hhhcCHHHHHHHHHHHHHHHcCC--chhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHH
Confidence 5556667777764 11 12223666777888888887664 335667899999999843 32222222 3566666
Q ss_pred HHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHH
Q 039062 553 MMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIG 632 (871)
Q Consensus 553 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~ 632 (871)
.+.+.+.. .....++..+..++...+.+. -.........+++.+-..+.......+-..+..++
T Consensus 146 ~ei~~~~~--------------~~~E~Al~lL~~Lls~~~~~~--~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~ 209 (543)
T PF05536_consen 146 CEIIPNQS--------------FQMEIALNLLLNLLSRLGQKS--WAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLS 209 (543)
T ss_pred HHHHHhCc--------------chHHHHHHHHHHHHHhcchhh--hhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 66664421 122335666666666555321 00022334456666666666655566777788888
Q ss_pred HHHHHhhh------hhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhh
Q 039062 633 ALAYAAGL------DFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEE 682 (871)
Q Consensus 633 ~l~~~~~~------~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 682 (871)
.+....+. .-......+...+...+++.-.+.-|..++.+.+.+.+..|.
T Consensus 210 ~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 210 AFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred HhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Confidence 88766631 112245567777777888877778899999999999888773
No 247
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=91.61 E-value=24 Score=38.88 Aligned_cols=210 Identities=12% Similarity=0.095 Sum_probs=106.2
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHccC
Q 039062 623 VHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEK-ILPYCDGIMTQLLKDLSS 701 (871)
Q Consensus 623 ~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~i~~~l~~~l~~ 701 (871)
+-...+..+..++..+ -.|...+..++..++..-... +..+|..|+-++.+++...... +.+.+.... +..+.+
T Consensus 258 ~~~~~L~~l~~l~~~~-~~f~k~lk~liK~~V~vWstg-e~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY---~afv~n 332 (661)
T KOG2256|consen 258 VLAFTLRHLTVLVPFL-ATFPKLLKKLIKAVVHVWSTG-EESLRVLAFLCLIDLCRKFKSTCLDPVLKTMY---LAFVRN 332 (661)
T ss_pred HHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHheeeccC-CcchhhHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHh
Confidence 3333344444444322 233344455555555444333 5589999999999998877643 333332222 222222
Q ss_pred CCCCCcCCchHHHHHHHHHH-hhcc-------ChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHH
Q 039062 702 NQLHRSVKPPIFSCFGDIAL-AIGE-------NFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGI 773 (871)
Q Consensus 702 ~~~~~~v~~~~~~~l~~i~~-~~~~-------~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l 773 (871)
......-...-++++..-.. -++- .-.-|+.++--.|.+++... ..+........ +.+.|+--.
T Consensus 333 sk~~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRnam~~k------~K~s~~~VYnW--qfi~cL~lW 404 (661)
T KOG2256|consen 333 SKFVTVNTLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRNAMITK------NKESVQSVYNW--QYVHCLDLW 404 (661)
T ss_pred CCCCCCcccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhcC------CHHHHHHHHHH--HHHHHHHHH
Confidence 21100001112222222221 1221 12357777777777777665 22222211111 223333222
Q ss_pred hhhcc-CCccccccccchHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcC
Q 039062 774 FQGFK-NSPKTQLLIPYAPHILQFLDSMYME--KDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSS 849 (871)
Q Consensus 774 ~~~~~-~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~ 849 (871)
+..++ .....+.+.|.+..+++.++++.+- ...--.+|..++..+-.+++..|- |.|-.+++.++|.+...+
T Consensus 405 ~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg~----fIPi~~ll~Eml~~~~~n 479 (661)
T KOG2256|consen 405 LRVISFANGSASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSGT----FIPLSPLLVEMLKSVTFN 479 (661)
T ss_pred HHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcCc----eeecHHHHHHHHHHhhcc
Confidence 22222 1113456778888888888776543 234556799989998888887753 444433577777777744
No 248
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=91.25 E-value=20 Score=37.10 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=52.3
Q ss_pred hHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhc---ccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHh
Q 039062 648 DFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEK---ILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALA 722 (871)
Q Consensus 648 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~---~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~ 722 (871)
.++..|++.++..+++.+...|+.=+|.+++..++. +..|- -=..+.++++++ +++||-.|+.|+..+..+
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~g--gKe~vM~Llnh~--d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYG--GKERVMNLLNHE--DPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhc--hHHHHHHHhcCC--CchHHHHHHHHHHHHHhh
Confidence 467777777877777788888998899999987742 22221 223567778888 789999999999887654
No 249
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=91.25 E-value=11 Score=42.35 Aligned_cols=116 Identities=10% Similarity=0.170 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhH-------HHHHHHHHHHHhhcccCCCCChhHHHHHH
Q 039062 688 CDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYL-------MYAMPMLQSAADLSAHTANVDDDMTEYTN 760 (871)
Q Consensus 688 ~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~-------~~i~~~l~~~l~~~~~~~~~d~~~~~~~~ 760 (871)
-+.++..-+.++.... +...-++++.++.+++...+. +..|+ +..+|.+.+.+... |++
T Consensus 516 ~p~vVr~Yl~Ll~~s~-n~~TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~------~~~------ 581 (717)
T KOG1048|consen 516 HPSVVRPYLLLLALSK-NDNTLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRND------DSD------ 581 (717)
T ss_pred cHHHHHHHHHHHHHhc-chHHHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcC------Cch------
Confidence 3666666455554221 455667788888887765442 22232 34467788888764 321
Q ss_pred HHHHHHHHHHHHHhhhccCC-ccccccccchHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHhHh
Q 039062 761 SLRNGILEAYSGIFQGFKNS-PKTQLLIPYAPHILQFLDSMYMEK----DMDELVMKTAIGLLGDLADTL 825 (871)
Q Consensus 761 ~~r~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~r~~a~~~l~~i~~~~ 825 (871)
++.+..+.+..+..+ ...+.+.. ..++-+..++.+. ..++++..+++..+..|...-
T Consensus 582 -----vv~s~a~~LrNls~d~rnk~ligk---~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~ 643 (717)
T KOG1048|consen 582 -----VVRSAAGALRNLSRDIRNKELIGK---YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN 643 (717)
T ss_pred -----HHHHHHHHHhhhccCchhhhhhhc---chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh
Confidence 333344444444332 12222332 3455666666542 256888888999999988543
No 250
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=91.22 E-value=0.46 Score=31.19 Aligned_cols=29 Identities=28% Similarity=0.620 Sum_probs=26.9
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHh
Q 039062 409 VALSFMLSALTKDPNNHVKDTTAWTLGRIF 438 (871)
Q Consensus 409 ~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~ 438 (871)
..+|.++..+ .++++.++..|+|+|++++
T Consensus 12 g~i~~Lv~ll-~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLL-KSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHT-TSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHH-cCCCHHHHHHHHHHHHHHh
Confidence 5789999999 9999999999999999886
No 251
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=91.15 E-value=16 Score=35.66 Aligned_cols=208 Identities=17% Similarity=0.138 Sum_probs=107.9
Q ss_pred HHHHHhccC--ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcC
Q 039062 461 TVLLQSMKD--TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSST 538 (871)
Q Consensus 461 ~~l~~~l~d--~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~ 538 (871)
|.++..+.+ +++++.....+|-.++.+ + - ...+.+++.+........ ...+..+...+..+...-+
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~-------~-~-~~~~~v~~~L~~L~~~~~---~~~~~~~~rLl~~lw~~~~ 70 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACH-------K-N-VCVPPVLQTLVSLVEQGS---LELRYVALRLLTLLWKAND 70 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhcc-------C-c-cchhHHHHHHHHHHcCCc---hhHHHHHHHHHHHHHHhCc
Confidence 444443443 677888888888777642 2 1 445566666666665543 2334456666777766655
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHH-c
Q 039062 539 DETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVF-A 617 (871)
Q Consensus 539 ~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l-~ 617 (871)
..+ +++..++..+.-...... ..++. . .+.......++..++...+. ...++++.+..++ +
T Consensus 71 r~f-~~L~~~L~~~~~r~~~~~-----~~~~~-~-~~~~i~~a~s~~~ic~~~p~----------~g~~ll~~ls~~L~~ 132 (234)
T PF12530_consen 71 RHF-PFLQPLLLLLILRIPSSF-----SSKDE-F-WECLISIAASIRDICCSRPD----------HGVDLLPLLSGCLNQ 132 (234)
T ss_pred hHH-HHHHHHHHHHHhhccccc-----CCCcc-h-HHHHHHHHHHHHHHHHhChh----------hHHHHHHHHHHHHhc
Confidence 433 444444333222211111 01111 1 11222233455566655332 4567888888888 6
Q ss_pred ccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh--hcccccHHHHHHHH
Q 039062 618 CRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE--EKILPYCDGIMTQL 695 (871)
Q Consensus 618 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~i~~~l 695 (871)
+.+..++..+++++..++..---++.+.. ..+.+.+..+..+.+....++.++-+....- +.......+++..+
T Consensus 133 ~~~~~~~alale~l~~Lc~~~vvd~~s~w----~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~l 208 (234)
T PF12530_consen 133 SCDEVAQALALEALAPLCEAEVVDFYSAW----KVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLL 208 (234)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccHHHHH----HHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHH
Confidence 66777788889999988844333443333 3333344445455555544444443222111 22233345666666
Q ss_pred HHHccCC
Q 039062 696 LKDLSSN 702 (871)
Q Consensus 696 ~~~l~~~ 702 (871)
.+.....
T Consensus 209 W~~~~~~ 215 (234)
T PF12530_consen 209 WEYTSSS 215 (234)
T ss_pred Hhhcccc
Confidence 6665554
No 252
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=90.88 E-value=24 Score=37.32 Aligned_cols=141 Identities=8% Similarity=0.106 Sum_probs=90.5
Q ss_pred ChHHHHHHHHHHHHHhhccC-CCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHH
Q 039062 144 PAHVKQATLETLGYLCEEVS-PDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMR 222 (871)
Q Consensus 144 ~~~~r~~al~~l~~l~~~~~-~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~ 222 (871)
+......|+++++.+.-.-. ...++.+...-++...+..+..+..+..+...++.+++.- ..+..+........++.
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q--~f~~~~~~~~~~~~l~~ 136 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ--KFSPKIMTSDRVERLLA 136 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CCCCcccchhhHHHHHH
Confidence 44566789999988764310 1223233334467777777765567778888888888762 11211211122234555
Q ss_pred HHHHhhc-cCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHH
Q 039062 223 VVCEATQ-SAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSS 286 (871)
Q Consensus 223 ~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~ 286 (871)
.+...-+ -+...+-...+.++..++..+|..+..+...=++.++..+-+....++..|+.+...
T Consensus 137 ~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~ 201 (372)
T PF12231_consen 137 ALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLE 201 (372)
T ss_pred HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 5544433 345677788899999999999999998888777777777777777888877665433
No 253
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.79 E-value=9.2 Score=45.66 Aligned_cols=192 Identities=13% Similarity=0.132 Sum_probs=110.1
Q ss_pred chhhhHHHHHHHHHHHhhhhhhhhh-----HhHHHHHHhhhcCCcchhHHHH---HHHHHHHHHHH-h---hhccccc--
Q 039062 622 TVHEEAMLAIGALAYAAGLDFAKYM-----PDFYKYLEMGLQNFEEYQVCAV---TVGVVGDICRA-L---EEKILPY-- 687 (871)
Q Consensus 622 ~~~~~a~~~l~~l~~~~~~~~~~~l-----~~i~~~l~~~l~~~~~~~v~~~---a~~~l~~l~~~-~---~~~~~~~-- 687 (871)
.+..-++.++.-+. .+|.+-+ ..+++.+....++..+..+--. -+|+++++.+. . +++...|
T Consensus 901 ~ivrlgf~~lrlIs----sDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~ 976 (1610)
T KOG1848|consen 901 KIVRLGFSCLRLIS----SDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNS 976 (1610)
T ss_pred hHHHhhhhhhhhhh----hcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcc
Confidence 34444555554443 3443333 3456666655555555455443 45667777765 1 1222111
Q ss_pred ------------------HHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHH--hHHHHHHHHHHHHhhccc
Q 039062 688 ------------------CDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEK--YLMYAMPMLQSAADLSAH 747 (871)
Q Consensus 688 ------------------~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~--~~~~i~~~l~~~l~~~~~ 747 (871)
.--++..|.++..++ ..+||..|+.++-+|..+.|..+.+ +-.-+...+...+...+.
T Consensus 977 ~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ds--r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~ 1054 (1610)
T KOG1848|consen 977 VEDLYSSMKSKEILPEVLWIMLLVHLADLCEDS--RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPI 1054 (1610)
T ss_pred hhhhcccccchhhhhhHHHHHHHHHHHHHhccc--hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccc
Confidence 112333445555555 6789999999999999999998887 666666666666654332
Q ss_pred CCC---CChhHHHHHHHHHHHHHHHHHHHhhhccCC----ccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 039062 748 TAN---VDDDMTEYTNSLRNGILEAYSGIFQGFKNS----PKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGD 820 (871)
Q Consensus 748 ~~~---~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~ 820 (871)
+.. ..+++ ....-++.+-++++++.-+... ..-..|..-.+.++.++.....+ .++++..+++.++.+
T Consensus 1055 q~~~ewngkei---qkqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~--~s~e~slsai~~~qe 1129 (1610)
T KOG1848|consen 1055 QNVSEWNGKEI---QKQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSD--ISPEISLSAIKALQE 1129 (1610)
T ss_pred cchhhhcchhH---hhhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc--CChHhHHHHHHHHHH
Confidence 110 11111 1233456677777777665432 00112334455666666666665 578899999999988
Q ss_pred HHhH
Q 039062 821 LADT 824 (871)
Q Consensus 821 i~~~ 824 (871)
+...
T Consensus 1130 ll~s 1133 (1610)
T KOG1848|consen 1130 LLFS 1133 (1610)
T ss_pred HHHH
Confidence 8764
No 254
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=90.62 E-value=3.3 Score=36.96 Aligned_cols=156 Identities=12% Similarity=0.132 Sum_probs=83.8
Q ss_pred hHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcc-----cccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHH-H
Q 039062 648 DFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKI-----LPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIA-L 721 (871)
Q Consensus 648 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~-----~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~-~ 721 (871)
.+=|.++.+++.. .+....+..|+.+...+...+ .+| +++-+.++..-.+ .-..|+..+..+. .
T Consensus 3 eikplLIsCL~~q---~~k~s~~KiL~~iVs~Va~~v~~~~~~~W-~eL~d~Ils~~~~------e~~kA~~IF~~L~~~ 72 (174)
T PF04510_consen 3 EIKPLLISCLTMQ---ETKESDFKILRRIVSHVAYEVFDLQEGGW-DELSDCILSLSEN------EPVKAFHIFICLPMP 72 (174)
T ss_pred chHHHHHHHHHhh---cccHhHHHHHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHhhcc------chHHHHHHHHhCCch
Confidence 4567778887644 334455566666665554332 122 3444554443221 1256677777777 4
Q ss_pred hhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHh
Q 039062 722 AIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMY 801 (871)
Q Consensus 722 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 801 (871)
..|+-+.|+++.++|.+.+.+.... +.|..++.-.+. .++...++.+......+.+...++.++..+..+.
T Consensus 73 l~~efl~~~~~~L~~~~~~~L~~p~-----~~d~~~W~LAl~----~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV 143 (174)
T PF04510_consen 73 LYGEFLIPFMENLLPEISKVLLPPE-----EVDVEDWVLALT----GAVCMAIQLLESSMRVDLVKELLPKMVKSVKELV 143 (174)
T ss_pred hhhhHHHHHHHHHHHHHHHHcCCch-----hccHHHHHHHHH----HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 4566677999999999999987642 111112222222 2223333443333223445555556666666666
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh
Q 039062 802 MEKDMDELVMKTAIGLLGDLAD 823 (871)
Q Consensus 802 ~~~~~~~~~r~~a~~~l~~i~~ 823 (871)
..+ ...++...++.-+..+.+
T Consensus 144 ~~g-~E~~~l~rgl~~~e~~v~ 164 (174)
T PF04510_consen 144 ERG-MEVGFLRRGLRDFESFVS 164 (174)
T ss_pred Hcc-cHHHHHHHHHHHHHHHHH
Confidence 543 333566666766665554
No 255
>PF05536 Neurochondrin: Neurochondrin
Probab=90.21 E-value=35 Score=38.11 Aligned_cols=186 Identities=16% Similarity=0.108 Sum_probs=109.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHH
Q 039062 274 EPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCL 353 (871)
Q Consensus 274 ~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l 353 (871)
...+..|+..+..+|..+ ++.. .+++. .-+|.+++.+.+.++ -.....+.+||
T Consensus 71 ~~~~~LavsvL~~f~~~~-~~a~-------------~~~~~-----~~IP~Lle~l~~~s~--------~~~v~dalqcL 123 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRDP-ELAS-------------SPQMV-----SRIPLLLEILSSSSD--------LETVDDALQCL 123 (543)
T ss_pred HHHHHHHHHHHHHHcCCh-hhhc-------------CHHHH-----HHHHHHHHHHHcCCc--------hhHHHHHHHHH
Confidence 457777888888887732 1100 11222 347888888775433 12344567777
Q ss_pred HHHHHHc-CCCc-c-cchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhh---hHHHHHHHHHHHHHccCCCcHHHH
Q 039062 354 GLVARTV-GDDI-V-PLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKL---LHIVNVALSFMLSALTKDPNNHVK 427 (871)
Q Consensus 354 ~~l~~~~-~~~~-~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~---~~~l~~i~~~l~~~l~~d~~~~vr 427 (871)
..++..- |... + ...++.+.+.+.+ ....++.++.++..+....+.+.. ...+..+++.+-..+ ...+...+
T Consensus 124 ~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~f-s~~~~~~k 201 (543)
T PF05536_consen 124 LAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDF-SSFHGEDK 201 (543)
T ss_pred HHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHH-HhhccchH
Confidence 7777432 2211 1 1233334333333 345678888888887765432222 234556777777777 77777778
Q ss_pred HHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHhhcc
Q 039062 428 DTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD--TPNVAEKACGALYFLAQGYE 489 (871)
Q Consensus 428 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~~l~~l~~~~~ 489 (871)
...+..|+.+....+.. +......+.....+...+...++. .+.-|..+......+.+.++
T Consensus 202 fell~~L~~~L~~~~~~-~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 202 FELLEFLSAFLPRSPIL-PLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HHHHHHHHHhcCcCCcc-ccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 88888888888776310 001123456777788888887775 45667777666666666543
No 256
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.21 E-value=23 Score=43.56 Aligned_cols=159 Identities=16% Similarity=0.177 Sum_probs=89.4
Q ss_pred chHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccch--hhHHHHHHHHHhh
Q 039062 105 VADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQ--DHVNKILTAVVQG 182 (871)
Q Consensus 105 ~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~--~~~~~i~~~l~~~ 182 (871)
+..||..+.+|++.- . ..+|..++..+-....+.+....+.+......+........+++ ..+..-+.++...
T Consensus 1050 s~~Irelv~rC~~~n--i---kSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F 1124 (1514)
T KOG0929|consen 1050 SAEIRELVVRCISSN--I---KSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEEF 1124 (1514)
T ss_pred cchhHHHHHhhhhhh--h---hhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHH
Confidence 467888888888822 1 15899999998888888888888888888886666552334421 2334444444444
Q ss_pred hcCCCCCHHHHHHHHHHHHHhhhcchh-----ccc------Chhh---HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Q 039062 183 MNASEMNNDVRLAATRALYNALSFAQA-----NFS------NDME---RDYIMRVVCEATQSAELKIRQAAFECLVSISS 248 (871)
Q Consensus 183 l~~~~~~~~vr~~al~~l~~~~~~~~~-----~~~------~~~~---~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~ 248 (871)
.++ ...+..-..+++.+..++..... .+. .+.+ |-.++-.+.....+...++|..+++.+-.+..
T Consensus 1125 ~~~-~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~ 1203 (1514)
T KOG0929|consen 1125 TKN-LGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILK 1203 (1514)
T ss_pred HHh-cCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHH
Confidence 432 11222222222222222211110 011 0111 11223333334446788999999999999999
Q ss_pred HhHHhhHHhH-HHHHHHHHHHh
Q 039062 249 TYYEKLAPYM-QDIYSITAKAV 269 (871)
Q Consensus 249 ~~~~~~~~~~-~~l~~~~~~~~ 269 (871)
.+++.+.+.. ..++..++..+
T Consensus 1204 ~~g~~F~~~~We~v~~~~fpIF 1225 (1514)
T KOG0929|consen 1204 EHGDDFSKEFWEDVFRILFPIF 1225 (1514)
T ss_pred hhhhhccHHHHHHHHHheeecc
Confidence 9887766554 35555444444
No 257
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=89.67 E-value=1.8 Score=38.75 Aligned_cols=126 Identities=13% Similarity=0.106 Sum_probs=78.7
Q ss_pred HhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCCh---------------hhhhHHHHH
Q 039062 345 IAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSP---------------DKLLHIVNV 409 (871)
Q Consensus 345 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---------------~~~~~~l~~ 409 (871)
++...+.++..++......-+|.+++.+.+.+++ +...+...+.++..+.+.... +.+....+.
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~ 82 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPD 82 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHH
Confidence 3445567777777766555678888877777666 456777778888777664310 012333455
Q ss_pred HHHHHHHHccCCC----cHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCChHHHHHHHHHH
Q 039062 410 ALSFMLSALTKDP----NNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGAL 481 (871)
Q Consensus 410 i~~~l~~~l~~d~----~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~~l 481 (871)
+++.+.+.+ ... ++.+...++.+++.+..+.+.. .-.-.++++.+++.+. ++..+..|+.+|
T Consensus 83 i~~~l~~~l-~~~~~~~~~~~~~~~L~~l~s~i~~~~~~--------~i~~~~~l~~~~~~l~-~~~~~~~A~~cl 148 (148)
T PF08389_consen 83 ILEILSQIL-SQSSSEANEELVKAALKCLKSWISWIPIE--------LIINSNLLNLIFQLLQ-SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHH-HHHCHCCHHHHHHHHHHHHHHHTTTS-HH--------HHHSSSHHHHHHHHTT-SCCCHHHHHHHH
T ss_pred HHHHHHHHH-HhhccccHHHHHHHHHHHHHHHHHhCCHH--------HhccHHHHHHHHHHcC-CHHHHHHHHHhC
Confidence 666666555 332 2788899999999988876411 1111247778888774 445577777764
No 258
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.45 E-value=48 Score=38.52 Aligned_cols=273 Identities=10% Similarity=0.099 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhh
Q 039062 525 AAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQY 604 (871)
Q Consensus 525 ~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 604 (871)
-+++.++.++...+..|.+.+-..+-+++..+.... ..+...+-.|+..++..++... +...+..-
T Consensus 567 i~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s-------------~~is~vA~sc~~~I~~a~~y~s-~~~lI~en 632 (1014)
T KOG4524|consen 567 IVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPS-------------EAISQVAQSCALRIADALNYGS-PPHLIREN 632 (1014)
T ss_pred hhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCch-------------HHHHHHHHHHHHHHHHHcCCCC-hHHHHHhh
Confidence 467888888888888776655444444444432211 1234446788889999888652 11122222
Q ss_pred HHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcc
Q 039062 605 ADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKI 684 (871)
Q Consensus 605 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~ 684 (871)
.+-+++.+-..++. ..+...+-..+..++...+....|++..++..+...+....... ...-+..+-.+.+..+...
T Consensus 633 ~DYlv~sla~~L~~--~~~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~-~~~~~~ll~s~ik~~~~~~ 709 (1014)
T KOG4524|consen 633 VDYLVNSLALRLNT--SGMSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYS-CLQFFQLLHSIIKEMKKKY 709 (1014)
T ss_pred hHHHHHHHHHHhcc--CCCCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHhhcc
Confidence 33444444444442 33445566667777777777778899999998888876554432 1222233333333333111
Q ss_pred cccHHHHHHHHHHHccCCC-CCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhh-c-----cc--CC---CCC
Q 039062 685 LPYCDGIMTQLLKDLSSNQ-LHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADL-S-----AH--TA---NVD 752 (871)
Q Consensus 685 ~~~~~~i~~~l~~~l~~~~-~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~-~-----~~--~~---~~d 752 (871)
... .++..+.+...... .....++..+....+... .|...+.+......-. + ++ ++ .++
T Consensus 710 ~~~--~il~~~~d~~~~~~~k~l~e~p~~~~e~~n~~~-------d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~ 780 (1014)
T KOG4524|consen 710 IND--EILGHIADQHISQSTKVLNELPTQVKELINDEN-------DLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEV 780 (1014)
T ss_pred ccc--hhhHHHHHHHHHHHHHHhhcchhhHHHhhhhHH-------HHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCc
Confidence 110 11211111111110 000112333332222222 1233333332222111 0 00 00 000
Q ss_pred h--------------hHHH---------------HHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcC
Q 039062 753 D--------------DMTE---------------YTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYME 803 (871)
Q Consensus 753 ~--------------~~~~---------------~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 803 (871)
+ +-++ ....+|-.+++++...+.-+.. ....+.|.+.+.++.+..++.+
T Consensus 781 edens~~~d~ep~~~~qv~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~--~~n~LlPlvhq~W~~vie~~~~ 858 (1014)
T KOG4524|consen 781 EDENSEYTDTEPILPDQVKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLAT--YHNLLLPLVHQTWPSVIECLLC 858 (1014)
T ss_pred cccccCCCCCCCCCChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhc--cchhHhHHHHhhhhHHHHHHhc
Confidence 0 0000 0234556666666554443332 3556888899999999888875
Q ss_pred CCCCHHHHHHHHHHHHHHHhHhcc
Q 039062 804 KDMDELVMKTAIGLLGDLADTLGS 827 (871)
Q Consensus 804 ~~~~~~~r~~a~~~l~~i~~~~~~ 827 (871)
.++-+...|+.|+-.++...|+
T Consensus 859 --k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 859 --KDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred --CchHHHHHHHHHHHHHHHHhhh
Confidence 5788899999999999999886
No 259
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=88.94 E-value=31 Score=35.63 Aligned_cols=191 Identities=9% Similarity=0.112 Sum_probs=105.8
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhH--------HhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHH
Q 039062 218 DYIMRVVCEATQSAELKIRQAAFECLVSISSTYY--------EKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICD 289 (871)
Q Consensus 218 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 289 (871)
..++..+...+..-+.+.|+.+...+..+..... +++..+-++++..++.+-.++ ++...+-..+-..++
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~--dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENP--DIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGST--TTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCc--cccchHHHHHHHHHh
Confidence 4455566666666788899999999988886531 123333356777666666544 344443333333332
Q ss_pred HHHhhhhhhcCCCCCCCCCchhhhHHhhh-hhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcC-------
Q 039062 290 EEIDILEEYGSDFTGNSDIPCFYFIKQAL-PALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVG------- 361 (871)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~------- 361 (871)
.+ ...+.++ +..+..+++.+.. ..+.+...|...+..+-....
T Consensus 153 ~e--------------------~l~~~iL~~~~f~~ff~~~~~---------~~Fdiasdaf~t~~~llt~hk~~~a~fl 203 (335)
T PF08569_consen 153 HE--------------------SLAKIILYSECFWKFFKYVQL---------PNFDIASDAFSTFKELLTRHKKLVAEFL 203 (335)
T ss_dssp SH--------------------HHHHHHHTSGGGGGHHHHTTS---------SSHHHHHHHHHHHHHHHHSSHHHHHHHH
T ss_pred hH--------------------HHHHHHhCcHHHHHHHHHhcC---------CccHhHHHHHHHHHHHHhccHHHHHHHH
Confidence 21 0111110 1111122222211 114454444444444332211
Q ss_pred CCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCC-hhhhhHHH--HHHHHHHHHHccCCCcHHHHHHHHHHHHHHh
Q 039062 362 DDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPS-PDKLLHIV--NVALSFMLSALTKDPNNHVKDTTAWTLGRIF 438 (871)
Q Consensus 362 ~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~l--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~ 438 (871)
..-+..++......+.++++-.|.-++..||.+..... ...+..|+ +.-+..+...+ +|++..+|..|+.+.--+.
T Consensus 204 ~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL-~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 204 SNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLL-RDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp HHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHT-T-S-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHh-cCcchhhhHHHHHHHHHHH
Confidence 11234566677788889999999999999999987532 23455665 56678888999 9999999999998877665
Q ss_pred hh
Q 039062 439 EF 440 (871)
Q Consensus 439 ~~ 440 (871)
..
T Consensus 283 AN 284 (335)
T PF08569_consen 283 AN 284 (335)
T ss_dssp H-
T ss_pred hC
Confidence 54
No 260
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.19 E-value=83 Score=39.72 Aligned_cols=192 Identities=13% Similarity=0.087 Sum_probs=120.5
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCC--c-hHHHHHHHHH
Q 039062 39 LLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTST--V-ADARSTSSQV 115 (871)
Q Consensus 39 ~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~--~-~~vr~~~a~~ 115 (871)
...|...+.+ ...+.+|++.++.+.+.+. .|...+....-.-.+- .+.+. + +.-...+..+
T Consensus 53 ~~~l~s~~~~-~~~~p~rkL~s~~i~rl~~------------~gd~f~~~~~l~~c~d---~l~d~~~~~~q~k~~a~~~ 116 (2067)
T KOG1822|consen 53 EQQLISRLTN-GAGPPTRKLISVAIARLIS------------NGDSFSLYSRLNSCND---FLSDGSPSDPQRKLAALSC 116 (2067)
T ss_pred HHHHHHHHcc-CCCchhHHHHHHHHHHHHh------------ccchhhHHHHHHHhhh---hhhcCCCccHHHHHhhccc
Confidence 3445555666 5678999999999988775 2444444333332222 23343 2 3444556677
Q ss_pred HHHHHhhhcCC--CCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHH
Q 039062 116 IAKVAGIELPQ--KQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVR 193 (871)
Q Consensus 116 l~~i~~~~~~~--~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr 193 (871)
++.....+.+. ....+.+..+.+.........|...+..+...+..+....-.......+.-.....+. +.+..||
T Consensus 117 l~~~y~~~g~~~~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~ll--d~s~~v~ 194 (2067)
T KOG1822|consen 117 LGSLYEHYGRMIGRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLL--DRSFNVK 194 (2067)
T ss_pred hHHHHHHhhHhhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhh--hhhHHHH
Confidence 88887766442 2456777777776666556677777778877777662111102233444444455555 7788899
Q ss_pred HHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Q 039062 194 LAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISST 249 (871)
Q Consensus 194 ~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 249 (871)
.++.+|+..+....+..+.. .+.+......+......+..+|....+++..+...
T Consensus 195 iaa~rc~~a~s~~~~~~~~~-Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~ 249 (2067)
T KOG1822|consen 195 IAAARCLKAFSNLGGPGLGT-SELETLASYCFKGIEISNSEVRCAVAEFLGSLLAL 249 (2067)
T ss_pred HHhHHHHHHHHhhcCccccc-hhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhc
Confidence 99999999987665554432 22244555566667777888999988998888765
No 261
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.17 E-value=1.8 Score=36.22 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=40.5
Q ss_pred hHHHHHHHHhhcC-CChHHHHHHHHHHHHHhhccCCCccchhhH--HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhh
Q 039062 130 PELIVSLLSNVHQ-LPAHVKQATLETLGYLCEEVSPDVVEQDHV--NKILTAVVQGMNASEMNNDVRLAATRALYNALS 205 (871)
Q Consensus 130 ~~ll~~L~~~l~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (871)
-+++..|.+.+.. .++....-|+.=++.++... |..- ... -+.-..++..+. +++++||..|+.|++.++.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~-p~gr--~ii~~lg~K~~vM~Lm~--h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY-PNGR--NIIEKLGAKERVMELMN--HEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GGGH--HHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHC-hhHH--HHHHhcChHHHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence 4455666665533 23334444555566666655 4321 111 122345677777 8999999999999999764
No 262
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.04 E-value=44 Score=36.32 Aligned_cols=117 Identities=9% Similarity=0.097 Sum_probs=75.2
Q ss_pred hhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchh-cccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Q 039062 169 QDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQA-NFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSIS 247 (871)
Q Consensus 169 ~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~-~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~ 247 (871)
...+..++..++.+=++ + .+-...++.+..++.|... ..........++..+...+.++|..+|..+++.+..+.
T Consensus 44 ~~~flr~vn~IL~~Kk~--~--si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~ 119 (885)
T COG5218 44 SEEFLRVVNTILACKKN--P--SIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLS 119 (885)
T ss_pred HHHHHHHHHHhhccccC--C--CcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHH
Confidence 34455556666655442 2 2223456667777665432 22223344566777778888899999999999999888
Q ss_pred HHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHH
Q 039062 248 STYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICD 289 (871)
Q Consensus 248 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 289 (871)
....+.-......++.-+...+-+.++.+|.+|+.++..+-+
T Consensus 120 d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 120 DVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE 161 (885)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 765443333344556655566677888999999988777654
No 263
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.02 E-value=26 Score=42.83 Aligned_cols=233 Identities=12% Similarity=0.076 Sum_probs=132.5
Q ss_pred HHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhh-hHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhccc
Q 039062 607 QIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKY-MPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKIL 685 (871)
Q Consensus 607 ~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~ 685 (871)
.=+..+++-+...|...+..|+.-++.++.......... ++.......+... +.+..||.....++..+...++..+.
T Consensus 41 sel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~-d~~~~VR~~t~~v~s~l~t~lkk~ls 119 (1312)
T KOG0803|consen 41 SELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLII-DEDRTVRLLTHDVFSKLLTKLKKKLS 119 (1312)
T ss_pred HHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 335556666666788889999999999887654332222 3333333333443 44679999999999999999999999
Q ss_pred ccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHH-----hHHHHHHHHHHHHhhc-ccCCCC----ChhH
Q 039062 686 PYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEK-----YLMYAMPMLQSAADLS-AHTANV----DDDM 755 (871)
Q Consensus 686 ~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~-----~~~~i~~~l~~~l~~~-~~~~~~----d~~~ 755 (871)
||+..+++..+-...+. ...+ +..+...+-....+...+ +-+.+.+.+.+.+-.. ++.-.+ ..|+
T Consensus 120 p~LK~li~~wl~~~~d~--~~~v---s~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee 194 (1312)
T KOG0803|consen 120 PFLKSLIPPWLGGQFDL--DYPV---SEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEE 194 (1312)
T ss_pred HHHHhhhhhhhheeccc--chHH---HHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHH
Confidence 99999999877654443 2333 333334443344343333 3345556666554433 211000 1111
Q ss_pred HH-HHHHHHHHHHHHHHHHhhhccCCcc----ccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhccccc
Q 039062 756 TE-YTNSLRNGILEAYSGIFQGFKNSPK----TQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAG 830 (871)
Q Consensus 756 ~~-~~~~~r~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~ 830 (871)
.| ....+...++.++..+....+..+. .+.++.+.. -..+-..++. ..++++.+.++++-.++.....-+.
T Consensus 195 ~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s--~~~fWk~~~~--k~~~i~~~~~ell~~l~~~i~~~~~ 270 (1312)
T KOG0803|consen 195 LESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLS--SEKFWKLLKS--KSPSIKVALLELLLSLIDDILNRVM 270 (1312)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhh--HHHHHHHhcC--CCcchhHHHHHHHHHHHhhhHHhcc
Confidence 11 1244555667777777766554311 111221111 1223344443 4677899999888888887765544
Q ss_pred ccccchHHHHHHHHHHHcCCC
Q 039062 831 SLIQQSLTSKDFLNECLSSKD 851 (871)
Q Consensus 831 ~~l~~~~~v~~~l~~~~~~~~ 851 (871)
++-.. .+.+.+.....+.|
T Consensus 271 ~~~~~--~l~~~~~~~~~~~d 289 (1312)
T KOG0803|consen 271 ESEKN--YLKPVLLGSIDSLD 289 (1312)
T ss_pred hhhhh--HhhHHHHccccccc
Confidence 44444 25555555544444
No 264
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=87.90 E-value=7.1 Score=36.48 Aligned_cols=80 Identities=18% Similarity=0.158 Sum_probs=60.7
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhH
Q 039062 176 LTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLA 255 (871)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~ 255 (871)
++.+++.+. +++..+|..|++.+..++.. .+... ...++.++.+..++++.+|..|...+..+.++++..+.
T Consensus 10 l~~Il~~~~--~~~~~vr~~Al~~l~~il~q---GLvnP---~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 10 LKNILELCL--SSDDSVRLAALQVLELILRQ---GLVNP---KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHHHhc---CCCCh---HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 344445555 78999999999999997653 22221 45688888888999999999999999999999988877
Q ss_pred HhHHHHHH
Q 039062 256 PYMQDIYS 263 (871)
Q Consensus 256 ~~~~~l~~ 263 (871)
....+=+.
T Consensus 82 ~~~~~gi~ 89 (187)
T PF12830_consen 82 SRYSEGIR 89 (187)
T ss_pred HHHHHHHH
Confidence 65544333
No 265
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=87.67 E-value=25 Score=33.08 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhh
Q 039062 577 QGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLD 641 (871)
Q Consensus 577 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 641 (871)
-..++.+++.+...++.. ..+++.+++..+..+-++.+...++.+=.++|..+.++|++
T Consensus 17 w~~vl~v~s~lf~~lg~~------~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe 75 (198)
T PF08161_consen 17 WPEVLNVLSALFEKLGER------SSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPE 75 (198)
T ss_pred HHHHHHHHHHHHHHHhhh------ccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHH
Confidence 345778888899998876 56788888888888888878888999999999999999964
No 266
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=87.66 E-value=16 Score=41.83 Aligned_cols=95 Identities=13% Similarity=0.076 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhH-hHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh
Q 039062 603 QYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMP-DFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE 681 (871)
Q Consensus 603 ~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 681 (871)
|+-..++..+-..+..+ ..|-.++..|+.++..-+..+..... .+++.|++++.-+.+..+...|+.+|..+...++
T Consensus 66 P~~K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 66 PHDKHLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred ccHHHHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 45566777777777754 46889999999999887766655554 5888899998866676788899999999999998
Q ss_pred hcccccHHHHHHHHHHHc
Q 039062 682 EKILPYCDGIMTQLLKDL 699 (871)
Q Consensus 682 ~~~~~~~~~i~~~l~~~l 699 (871)
..+.+|+++++..+.+++
T Consensus 144 ~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 144 SSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 899999999999988877
No 267
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.84 E-value=2.5 Score=38.77 Aligned_cols=93 Identities=17% Similarity=0.248 Sum_probs=69.9
Q ss_pred HHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh---hcc
Q 039062 608 IMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE---EKI 684 (871)
Q Consensus 608 i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~---~~~ 684 (871)
.++.+..-|...+.+.|--|-.-+..+.-..|+.+.|.+|+++..|...+...+ .++...++.+|+.+....+ ..+
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd-~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRD-DEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhccccchhh
Confidence 344455555555666777777788888888899999999999999999987654 4888888988888876544 678
Q ss_pred cccHHHHHHHHHHHccCC
Q 039062 685 LPYCDGIMTQLLKDLSSN 702 (871)
Q Consensus 685 ~~~~~~i~~~l~~~l~~~ 702 (871)
.||..++++.+ +.+++.
T Consensus 194 VPfYRQlLp~~-n~~k~~ 210 (262)
T KOG3961|consen 194 VPFYRQLLPVL-NTFKNS 210 (262)
T ss_pred hhHHHHhhhhh-hhhccc
Confidence 88888888874 444444
No 268
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=86.54 E-value=1.8 Score=34.70 Aligned_cols=56 Identities=9% Similarity=0.188 Sum_probs=45.5
Q ss_pred ccccHhHHHHHHHHHHHHHcCCC---cccchHHHHHhhhcC--CChhhHHHHHHHHHHhhc
Q 039062 341 GAWNIAMAGGTCLGLVARTVGDD---IVPLVIPFIEENIAK--PDWRQREAATYAFGSILE 396 (871)
Q Consensus 341 ~~~~~r~~a~~~l~~l~~~~~~~---~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~ 396 (871)
+.|.+|..|++.|..++..++.. +-|.+...+.+.+.| ..+..+++|+..+..+..
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 35999999999999999999743 567777777777765 457889999999999844
No 269
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=86.42 E-value=28 Score=32.48 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=56.8
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCcc
Q 039062 95 TCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVV 167 (871)
Q Consensus 95 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~ 167 (871)
+.+++...+++..+|..+.+++..+.+..+- +=.+.+|.++.+.+++++.+|..|...+..+.+.. ++.+
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv--nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~-~s~v 80 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLV--NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH-ESLV 80 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC--ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh-HHHH
Confidence 4566777788899999999999999987542 11468899999999999999999999999998877 5444
No 270
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.64 E-value=3.7 Score=37.73 Aligned_cols=89 Identities=18% Similarity=0.223 Sum_probs=68.0
Q ss_pred HHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhh---ccC
Q 039062 650 YKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAI---GEN 726 (871)
Q Consensus 650 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~---~~~ 726 (871)
+|.+...+...+ ...+-.|-.-+.++....++.+.|.+++++..|-..|... +.++...++.++..+.... |..
T Consensus 116 Lp~F~dGL~e~~-hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~tr--d~ev~~~~Lkvlq~lv~~~~~vG~a 192 (262)
T KOG3961|consen 116 LPLFFDGLAETD-HPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTR--DDEVICRTLKVLQQLVVSVGCVGAA 192 (262)
T ss_pred HHHHhhhhhhcC-CCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHhccccchh
Confidence 344444444332 2455566666778888888999999999999999999887 7788899999999888764 578
Q ss_pred hHHhHHHHHHHHHHH
Q 039062 727 FEKYLMYAMPMLQSA 741 (871)
Q Consensus 727 ~~~~~~~i~~~l~~~ 741 (871)
+.||.-+++|.+.-.
T Consensus 193 LVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 193 LVPFYRQLLPVLNTF 207 (262)
T ss_pred hhhHHHHhhhhhhhh
Confidence 999999999987643
No 271
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.55 E-value=1.6e+02 Score=40.19 Aligned_cols=184 Identities=13% Similarity=0.137 Sum_probs=104.0
Q ss_pred HHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccC---CCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHH
Q 039062 458 QIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDV---GPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEV 533 (871)
Q Consensus 458 ~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~---~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l 533 (871)
..++++..++.. +..++.....++..+....... .....-.|.++.+++.+....-++.| .-|...+.+|+.+
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~w---y~k~gG~~gI~~l 1060 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTW---YAKDGGVNGIKCL 1060 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhH---HHHcCCCceeeee
Confidence 467888888873 6666666666666554322111 11345568888889888888877765 3455677777777
Q ss_pred HHhcCCC-cHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHH
Q 039062 534 VRSSTDE-TAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLF 612 (871)
Q Consensus 534 ~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l 612 (871)
+...+.. ..++...++..++..+.+... +................+..........+ .-......++..+
T Consensus 1061 ~~~~~~~~l~d~~~d~~~~l~fvl~d~~~-----e~~~~~~~~~~~~l~~ll~~~~~~~~~~~----~~~~~~~~~~~~l 1131 (3550)
T KOG0889|consen 1061 IESMPSLWLLDFQVDILKALFFVLKDTES-----EVSSLPLDEAKDILMDILRVIFIDELAEE----ERAKSAMNVFSPL 1131 (3550)
T ss_pred hhhchHHHHHHHHHHHhhhHHHhhcCCcc-----ccccchHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHH
Confidence 7777732 233444455555555443311 00000000111122222222222222110 0123456677777
Q ss_pred HHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHH
Q 039062 613 LRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYL 653 (871)
Q Consensus 613 ~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l 653 (871)
..-+-+++..||+.+..++..+....|......+...-..+
T Consensus 1132 v~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~l 1172 (3550)
T KOG0889|consen 1132 VLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVL 1172 (3550)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 77777788899999999999999988766665555444443
No 272
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=85.42 E-value=1.8 Score=28.28 Aligned_cols=28 Identities=43% Similarity=0.368 Sum_probs=24.8
Q ss_pred HHHHHHHHhccC-ChHHHHHHHHHHHHHH
Q 039062 458 QIITVLLQSMKD-TPNVAEKACGALYFLA 485 (871)
Q Consensus 458 ~il~~l~~~l~d-~~~v~~~a~~~l~~l~ 485 (871)
..+|.|++.+.+ ++.+++.|+++|.+++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 478999999986 7899999999999985
No 273
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=84.91 E-value=81 Score=36.37 Aligned_cols=132 Identities=16% Similarity=0.143 Sum_probs=74.8
Q ss_pred HHHHHHHhhcC----CchHHHHHHHHHHHHHHhhhcCC------------CCchHHHHHHHH----hhcCCChHHHHHHH
Q 039062 93 IKTCLLNTLTS----TVADARSTSSQVIAKVAGIELPQ------------KQWPELIVSLLS----NVHQLPAHVKQATL 152 (871)
Q Consensus 93 i~~~ll~~l~~----~~~~vr~~~a~~l~~i~~~~~~~------------~~~~~ll~~L~~----~l~~~~~~~r~~al 152 (871)
+...++.++.. .++.++..+...++.++...... ..-.++++.+.+ .....+...+..++
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 33344444443 34678888888888887654332 111233333333 33445667788889
Q ss_pred HHHHHHhhccCCCccchhhHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhc--
Q 039062 153 ETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNAS-EMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQ-- 229 (871)
Q Consensus 153 ~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~-- 229 (871)
.+|+.+-- +..++.+...+... +.+..+|.+|+.++..+....+ +.+.+.+.....
T Consensus 512 kaLgN~g~------------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~---------~~v~~~l~~I~~n~ 570 (618)
T PF01347_consen 512 KALGNLGH------------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP---------EKVREILLPIFMNT 570 (618)
T ss_dssp HHHHHHT-------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H---------HHHHHHHHHHHH-T
T ss_pred HHhhccCC------------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc---------HHHHHHHHHHhcCC
Confidence 99987521 22344555666532 4578999999999987644322 234444444432
Q ss_pred cCcHHHHHHHHHHHHH
Q 039062 230 SAELKIRQAAFECLVS 245 (871)
Q Consensus 230 ~~~~~~~~~a~~~l~~ 245 (871)
..+.++|.+|+..|..
T Consensus 571 ~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 571 TEDPEVRIAAYLILMR 586 (618)
T ss_dssp TS-HHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHh
Confidence 3478899999877664
No 274
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.24 E-value=49 Score=33.29 Aligned_cols=300 Identities=12% Similarity=0.137 Sum_probs=148.4
Q ss_pred CCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhc--cCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHH
Q 039062 187 EMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQ--SAELKIRQAAFECLVSISSTYYEKLAPYMQ-DIYS 263 (871)
Q Consensus 187 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~ 263 (871)
.++..+-..++.++..+..-.++.++-+ -++++...+. .++.++-...+.++..-+-.+...-..+++ .+.+
T Consensus 118 ~~~~~~l~ksL~al~~lt~~qpdl~da~-----g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHKQPDLFDAE-----AMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred CCchhHHHHHHHHHHHhhcCCcchhccc-----cHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 5777788888888888776655544322 3444555443 346677777777776655432221122233 4666
Q ss_pred HHHHHhhCCCh-hHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCc---hhhhHHhhhh-hhHHHHHHHHhcccCCccc
Q 039062 264 ITAKAVREDEE-PVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIP---CFYFIKQALP-ALVPLLLEILLKQEEDQDQ 338 (871)
Q Consensus 264 ~~~~~~~~~~~-~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~l~~~l~~~l~~~~~d~~~ 338 (871)
++...+..... .+.......+..+.-. ++-.++ ...+.+.+.. .++..|.+.+...- |++
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~d-------------DDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~-dp~- 257 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTD-------------DDIRVVFGQAHGHARTIAKEGILTALTEALQAGI-DPD- 257 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCC-------------CceeeecchhhHHHHHHHHhhhHHHHHHHHHccC-Ccc-
Confidence 66666654332 2333333333222111 111111 1123333322 23444545443221 121
Q ss_pred ccccccHhHHHHHHHHHHH------HHcC-CCcccchHHHHHhhhcCCChhhH---HHHHHHHHHhhcCCChhhhhHHH-
Q 039062 339 EEGAWNIAMAGGTCLGLVA------RTVG-DDIVPLVIPFIEENIAKPDWRQR---EAATYAFGSILEGPSPDKLLHIV- 407 (871)
Q Consensus 339 ~~~~~~~r~~a~~~l~~l~------~~~~-~~~~~~l~~~l~~~l~~~~~~~r---~~a~~~l~~l~~~~~~~~~~~~l- 407 (871)
.-..+..+|+.++ .... ..-+..++..+.. +.+-..| ..++..|.+++.+ +..+..+
T Consensus 258 ------~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d---~n~~~~r~l~k~~lslLralAG~---DsvKs~IV 325 (461)
T KOG4199|consen 258 ------SLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDD---SNEQGNRTLAKTCLSLLRALAGS---DSVKSTIV 325 (461)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhh---hchhhHHHHHHHHHHHHHHHhCC---CchHHHHH
Confidence 2222333444443 2221 1112233333332 1344555 3445566666653 3333333
Q ss_pred -HHHHHHHHHHcc-CCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHH-HHHHHHHHhccCCh---HHHHHHHHHH
Q 039062 408 -NVALSFMLSALT-KDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQ-QIITVLLQSMKDTP---NVAEKACGAL 481 (871)
Q Consensus 408 -~~i~~~l~~~l~-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-~il~~l~~~l~d~~---~v~~~a~~~l 481 (871)
....+.++..+. -..+|.|-..++.++..++-..+. ....+++ ..-...++.++..| .|+..+|+.+
T Consensus 326 ~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pd-------hsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~I 398 (461)
T KOG4199|consen 326 EKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPD-------HSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMI 398 (461)
T ss_pred HhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcc-------hHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 223333333321 236788888888888888766542 2222222 23344566776544 6899999999
Q ss_pred HHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHH
Q 039062 482 YFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEV 533 (871)
Q Consensus 482 ~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l 533 (871)
.+++-.- .+.-.+++..=++.|+...... ++..+..+-.++..+
T Consensus 399 RNiv~rs-----~~~~~~~l~~GiE~Li~~A~~~---h~tce~~akaALRDL 442 (461)
T KOG4199|consen 399 RNIVVRS-----AENRTILLANGIEKLIRTAKAN---HETCEAAAKAALRDL 442 (461)
T ss_pred HHHHHhh-----hhccchHHhccHHHHHHHHHhc---CccHHHHHHHHHHhc
Confidence 9997642 3455566666666666665544 345555555555443
No 275
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=84.13 E-value=29 Score=30.64 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh--HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh
Q 039062 605 ADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM--PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE 681 (871)
Q Consensus 605 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 681 (871)
....+..|..-+++.++.+.-.|+..+..+++.+|..|...+ ..++..+.+.+.......|+...+.++..-...+.
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 346677777888888888999999999999999998886554 45777777777765566899999999998887776
No 276
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=84.09 E-value=24 Score=31.46 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhhcc--CCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHH
Q 039062 146 HVKQATLETLGYLCEEV--SPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRV 223 (871)
Q Consensus 146 ~~r~~al~~l~~l~~~~--~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~ 223 (871)
..-..++.++..+.+.- +.+.+ .+.++..+....+.+..+..+...|+..|-+++...+..+... ..+--++.
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l----~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V-~~evt~~~ 106 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTL----SDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLV-EQEVTLES 106 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhc----cHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHH-hccCCHHH
Confidence 34456788888888852 12333 3455555556665534578889999999999886544322111 11223667
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHHHHhHH
Q 039062 224 VCEATQSAELKIRQAAFECLVSISSTYYE 252 (871)
Q Consensus 224 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~ 252 (871)
+...++..+++++..++..+.++..+.++
T Consensus 107 Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 107 LIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 77778888999999999999998876544
No 277
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=83.92 E-value=16 Score=32.19 Aligned_cols=74 Identities=11% Similarity=0.015 Sum_probs=59.4
Q ss_pred chHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH--HHHHHHHHHHccCC-CcHHHHHHHHHHHHHHhhhhc
Q 039062 367 LVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV--NVALSFMLSALTKD-PNNHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 367 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l--~~i~~~l~~~l~~d-~~~~vr~~a~~~l~~~~~~~~ 442 (871)
..+..|...+.+.++++...|+.++.+++.+|+ ..+...+ ..++..+...+ .+ .++.|+..++..+...+..+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG-~~fh~evask~Fl~eL~kl~-~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCG-KRFHQEVASRDFTQELKKLI-NDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHhhHHHHHHHHHHh-cccCCHHHHHHHHHHHHHHHHHhC
Confidence 456667788888899999999999999999997 4444333 46677777777 66 789999999999999888775
No 278
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=83.90 E-value=16 Score=32.14 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh--HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhh
Q 039062 605 ADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM--PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEE 682 (871)
Q Consensus 605 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 682 (871)
....+..+..-++..++.+.-.|+..|..+++.+|..|...+ ..++..+.+.+.+.....|+..++.++..-...++.
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 346677777778888888999999999999999998776544 457777777776555678999999999988877764
No 279
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=83.58 E-value=23 Score=31.15 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh--HhHHHHHHhhhcCCcchh---HHHHHHHHHHHHHH
Q 039062 604 YADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM--PDFYKYLEMGLQNFEEYQ---VCAVTVGVVGDICR 678 (871)
Q Consensus 604 ~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~---v~~~a~~~l~~l~~ 678 (871)
.....+..|..-|.+.++.++-.|+..+..+++.+|..|...+ ..++..+.+.+.+..... |+..++.++..-..
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3456777888888888889999999999999999998887655 457777777665443333 89999999988888
Q ss_pred Hhh
Q 039062 679 ALE 681 (871)
Q Consensus 679 ~~~ 681 (871)
.++
T Consensus 119 ~f~ 121 (140)
T PF00790_consen 119 AFK 121 (140)
T ss_dssp HTT
T ss_pred HHC
Confidence 774
No 280
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=83.29 E-value=61 Score=33.66 Aligned_cols=89 Identities=15% Similarity=0.198 Sum_probs=58.8
Q ss_pred HHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHH--HHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhc
Q 039062 390 AFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTT--AWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSM 467 (871)
Q Consensus 390 ~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a--~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 467 (871)
-++.+.+...+..+...+..++..+..++ .++|-.|.+.| +|....+...+. ......++.++|+|.+..
T Consensus 322 ElEEILe~iep~eFqk~~~PLf~qia~c~-sS~HFQVAEraL~~wnNe~i~~Li~-------~n~~~ilPiiFpaLyr~s 393 (457)
T KOG2085|consen 322 ELEEILEVIEPSEFQKIMVPLFRQIARCV-SSPHFQVAERALYLWNNEYIRSLIS-------QNAEVILPIVFPALYRNS 393 (457)
T ss_pred hHHHHHHhcCHHHHHHHhHHHHHHHHHHc-CChhHHHHHHHHHHHhhHHHHHHHH-------hccceeeehhhHHHHHHH
Confidence 44555555556667777788899999999 99999986555 444443444443 234567788888888887
Q ss_pred cCChH--HHHHHHHHHHHHHh
Q 039062 468 KDTPN--VAEKACGALYFLAQ 486 (871)
Q Consensus 468 ~d~~~--v~~~a~~~l~~l~~ 486 (871)
+.+|+ +..-.+..+..|++
T Consensus 394 k~hWN~~i~~l~~nvlk~f~e 414 (457)
T KOG2085|consen 394 KSHWNQAIHNLILNVLKTFME 414 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 77665 45555566666654
No 281
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=82.29 E-value=79 Score=34.28 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHHhhcCCChhhhhHHHHHHHH-HHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHH
Q 039062 381 WRQREAATYAFGSILEGPSPDKLLHIVNVALS-FMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQI 459 (871)
Q Consensus 381 ~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~-~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 459 (871)
++.|.+|..+||.++....... +..++. .+..+| ++++..-|..+..++..++...... ......+.+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~----~~~~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~------~~~~~~~~l 169 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESS----LQEIFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKER------NPSPPPQAL 169 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCccc------cCCccHHHH
Confidence 6889999999999998763222 333443 588889 9999888999999999888877532 111113455
Q ss_pred HHHHHHhccC--C----------hHHHHHHHHHHHHHHh
Q 039062 460 ITVLLQSMKD--T----------PNVAEKACGALYFLAQ 486 (871)
Q Consensus 460 l~~l~~~l~d--~----------~~v~~~a~~~l~~l~~ 486 (871)
.+.|...|.+ . .+++..|-..+..|.+
T Consensus 170 ~~~L~~~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~ 208 (441)
T PF12054_consen 170 SPRLLEILENPEPPYYDELVPSLKRLRTECQQLLATFRD 208 (441)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666662 1 3556666666665544
No 282
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=82.17 E-value=15 Score=33.66 Aligned_cols=98 Identities=8% Similarity=0.104 Sum_probs=67.6
Q ss_pred hhhhHHHHHHHHHHHhhhhhh------hhh----HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHH
Q 039062 623 VHEEAMLAIGALAYAAGLDFA------KYM----PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIM 692 (871)
Q Consensus 623 ~~~~a~~~l~~l~~~~~~~~~------~~l----~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~ 692 (871)
.+.-+++.+..+....|..+. .+. ..+++.+.+.+.+.+ ..+...++.++..+...++..+..-+.-++
T Consensus 38 ~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~~~~~Lk~ele~~l 116 (168)
T PF12783_consen 38 SKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSRFRSHLKLELEVFL 116 (168)
T ss_pred HHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777776655 222 357777877776654 688888999999998888877776677777
Q ss_pred HHHHH-HccCCCCCCcCCchHHHHHHHHHH
Q 039062 693 TQLLK-DLSSNQLHRSVKPPIFSCFGDIAL 721 (871)
Q Consensus 693 ~~l~~-~l~~~~~~~~v~~~~~~~l~~i~~ 721 (871)
+.++. .+++++....-|..++.++..++.
T Consensus 117 ~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 117 SHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 77666 555443223456667777777665
No 283
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=81.83 E-value=13 Score=30.50 Aligned_cols=61 Identities=10% Similarity=-0.021 Sum_probs=50.9
Q ss_pred hhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhh-hhhhhHhHHHHHHhhhcC
Q 039062 599 YVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLD-FAKYMPDFYKYLEMGLQN 659 (871)
Q Consensus 599 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~l~~i~~~l~~~l~~ 659 (871)
..+.|+++.++..+...+.+-..++|..++..+..+++..++. +..+..++++.....+..
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 3477888888888888888888999999999999999999988 666777788877776653
No 284
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=81.68 E-value=3.9 Score=33.56 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=52.5
Q ss_pred CCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHh
Q 039062 494 SSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDE-TAPMVLQLVPVIMMELHKT 559 (871)
Q Consensus 494 ~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll~~l~~~l~~~ 559 (871)
++.+.||++.++..+...+..- .+.+|..++..+..+++.+|.. +..+..++++.++..+...
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi---~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHI---SPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhC---CHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 4567889999998888888766 4689999999999999999987 6777788888888877654
No 285
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=81.62 E-value=55 Score=32.01 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=58.8
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchh-------------cccC---------------hhhHHHHHHHHH
Q 039062 174 KILTAVVQGMNASEMNNDVRLAATRALYNALSFAQA-------------NFSN---------------DMERDYIMRVVC 225 (871)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~-------------~~~~---------------~~~~~~i~~~l~ 225 (871)
.+-..++..+. +.++.+|..|+|.+..++..... .++. +.+...++..++
T Consensus 43 ~lK~~Il~~~~--~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll 120 (239)
T PF11935_consen 43 ELKDRILSLWD--SENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLL 120 (239)
T ss_dssp HHHHHHHHGGG--SSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 33445666666 56889999999999888743211 0110 112245777888
Q ss_pred HhhccCc--HHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHH
Q 039062 226 EATQSAE--LKIRQAAFECLVSISSTYYEKLAPYMQDIYSI 264 (871)
Q Consensus 226 ~~l~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~ 264 (871)
..+.++. +.+...++.+|..+++..|.+....++.+..+
T Consensus 121 ~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~ 161 (239)
T PF11935_consen 121 DVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSF 161 (239)
T ss_dssp HHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHH
T ss_pred HHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 8776554 77888899999999999888877655555443
No 286
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=81.47 E-value=43 Score=30.63 Aligned_cols=102 Identities=14% Similarity=0.183 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHHhhhcchhcccCh----h----hHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHH
Q 039062 189 NNDVRLAATRALYNALSFAQANFSND----M----ERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQD 260 (871)
Q Consensus 189 ~~~vr~~al~~l~~~~~~~~~~~~~~----~----~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 260 (871)
+...|..+++.+..+++..+..+... . .+..+.+.+.+.+.++++.+...+++.+..++..+...+...++.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788888888877666555411 1 234566666676666778999999999999999888888888887
Q ss_pred HHHHHHH-HhhCCC--hhHHHHHHHHHHHHHHH
Q 039062 261 IYSITAK-AVREDE--EPVALQAIEFWSSICDE 290 (871)
Q Consensus 261 l~~~~~~-~~~~~~--~~~~~~a~~~~~~l~~~ 290 (871)
++..+.. .+.++. ..-+..+++.+..++..
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 7777766 444333 35677789998888874
No 287
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=81.47 E-value=19 Score=31.38 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh--HhHHHHHHhhhcCCcchh-HHHHHHHHHHHHHHHhh
Q 039062 606 DQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM--PDFYKYLEMGLQNFEEYQ-VCAVTVGVVGDICRALE 681 (871)
Q Consensus 606 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~-v~~~a~~~l~~l~~~~~ 681 (871)
...+..+..-++.+++.+.-.|+..+..+++.+|..|...+ ..++..+...+.+..... |+..++.++..-...+.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 45667777778888888999999999999999999886555 347777777776654444 88899998888877775
No 288
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=81.35 E-value=20 Score=28.25 Aligned_cols=67 Identities=16% Similarity=0.311 Sum_probs=51.5
Q ss_pred HHHHHHHHHh-hccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHH
Q 039062 218 DYIMRVVCEA-TQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFW 284 (871)
Q Consensus 218 ~~i~~~l~~~-l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~ 284 (871)
..++.-+... ....+.++|...++|+..++...+..+..-=+.++..+.....+.++++...|.+.+
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4455444444 344688999999999999999998888777778888888888888888777776654
No 289
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=81.18 E-value=7.8 Score=30.57 Aligned_cols=71 Identities=11% Similarity=0.043 Sum_probs=52.0
Q ss_pred chHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 039062 789 YAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARL 863 (871)
Q Consensus 789 ~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~ 863 (871)
+-..++..+..++.+ ..+.++|...+.|+..++...|+.+..=-+. |..++..+..+.+..+-..|-....
T Consensus 14 fQ~~fL~Pf~~i~~~-~~~~~vre~il~ci~qil~~~~~~i~SGW~~---if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSN-NPSIDVRELILECILQILQSRGENIKSGWKV---IFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHhHHHHHhccHH---HHHHHHHHHhCCCccHHHHHHHHHh
Confidence 344677777777654 3688999999999999999888765533332 7788888888777777777655544
No 290
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=81.12 E-value=31 Score=35.64 Aligned_cols=91 Identities=12% Similarity=0.126 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHH--HHHHhhhhhhhhhHhHHHHHHhhhc
Q 039062 581 CGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGA--LAYAAGLDFAKYMPDFYKYLEMGLQ 658 (871)
Q Consensus 581 ~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~--l~~~~~~~~~~~l~~i~~~l~~~l~ 658 (871)
+.-+..+.....+. .|.....+++..+-.++++++..|-+.|+..|.. +.....+.-...+|.++|.|.+..+
T Consensus 320 L~ElEEILe~iep~-----eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk 394 (457)
T KOG2085|consen 320 LNELEEILEVIEPS-----EFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSK 394 (457)
T ss_pred HhhHHHHHHhcCHH-----HHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHH
Confidence 34455555555433 2777788999999999999988899988877654 3444444444566777777777655
Q ss_pred CCcchhHHHHHHHHHHHH
Q 039062 659 NFEEYQVCAVTVGVVGDI 676 (871)
Q Consensus 659 ~~~~~~v~~~a~~~l~~l 676 (871)
..-+..+...++.++..+
T Consensus 395 ~hWN~~i~~l~~nvlk~f 412 (457)
T KOG2085|consen 395 SHWNQAIHNLILNVLKTF 412 (457)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 433323333333434333
No 291
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=80.93 E-value=2.9 Score=27.58 Aligned_cols=41 Identities=22% Similarity=0.426 Sum_probs=28.5
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 039062 154 TLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRAL 200 (871)
Q Consensus 154 ~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l 200 (871)
+++.+.+.- |..++ .+.+...+...+. |+++.||.+|++.+
T Consensus 2 ~l~~iv~~d-p~ll~---~~~v~~~i~~rl~--D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKD-PTLLD---SSDVQSAIIRRLS--DSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcC-ccccc---hHHHHHHHHHHhc--CCChHHHHHHHHHC
Confidence 345555544 55542 2366777888888 99999999998753
No 292
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=80.19 E-value=14 Score=32.63 Aligned_cols=90 Identities=12% Similarity=0.133 Sum_probs=63.1
Q ss_pred hHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccH--HHHHHHHHHHccCCCCCCc--CCchHHHHHHHHHH
Q 039062 646 MPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYC--DGIMTQLLKDLSSNQLHRS--VKPPIFSCFGDIAL 721 (871)
Q Consensus 646 l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~--v~~~~~~~l~~i~~ 721 (871)
-...+..|.+.+.. .++.+...|+.++..+.+++|..|...+ ..+++.+...+.+...... ||..++..+..-+.
T Consensus 40 ~kea~~~l~krl~~-~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 40 AKEAARALRKRLKH-GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 34566777777775 4668999999999999999997765543 5678888887776543333 88888888888888
Q ss_pred hhccC-hHHhHHHHHH
Q 039062 722 AIGEN-FEKYLMYAMP 736 (871)
Q Consensus 722 ~~~~~-~~~~~~~i~~ 736 (871)
.++.. -.+++..++.
T Consensus 119 ~f~~~~~~~~i~~~y~ 134 (140)
T PF00790_consen 119 AFKSDPELSLIQDTYK 134 (140)
T ss_dssp HTTTSTTGHHHHHHHH
T ss_pred HHCCCCCchHHHHHHH
Confidence 87542 2234444433
No 293
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=78.98 E-value=6 Score=33.18 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhccc--ccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHH
Q 039062 792 HILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSN--AGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAI 865 (871)
Q Consensus 792 ~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~--~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 865 (871)
.++..|..++... .++.+..-|+.=||.+++.+|.. +..-+. ++..+..+..+.|++||..|..|.+.|
T Consensus 43 ~llk~L~~lL~~s-~d~~~laVac~Dig~~vr~~p~gr~ii~~lg----~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLDKS-DDPTTLAVACHDIGEFVRHYPNGRNIIEKLG----AKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH-SH-HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHS----HHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcceeehhhcchHHHHHHChhHHHHHHhcC----hHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 6888888888542 36666777888899999998654 333343 567888888889999999999888765
No 294
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=78.85 E-value=3.4 Score=27.24 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=29.1
Q ss_pred HHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 039062 199 ALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECL 243 (871)
Q Consensus 199 ~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l 243 (871)
+++.++...+.... .+.+.+.+...+.++++.+|.++++.+
T Consensus 2 ~l~~iv~~dp~ll~----~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLD----SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccc----hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45555554443332 257888889999999999999998864
No 295
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=78.59 E-value=49 Score=38.07 Aligned_cols=153 Identities=14% Similarity=0.181 Sum_probs=94.0
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHH
Q 039062 96 CLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKI 175 (871)
Q Consensus 96 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i 175 (871)
.|+..|.+.+-.+...+-..+-.....+ .-+-++..|+...-+.+.. .++.+|..+ - ..+-..+
T Consensus 8 ~l~~~l~s~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~y~~~t~s~---~~~~il~~~---~------~P~~K~~ 71 (668)
T PF04388_consen 8 ELLSLLESNDLSVLEEIKALLQELLNSD----REPWLVNGLVDYYLSTNSQ---RALEILVGV---Q------EPHDKHL 71 (668)
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHhhcc----chHHHHHHHHHHHhhcCcH---HHHHHHHhc---C------CccHHHH
Confidence 4556666666444444444444443332 2244566666654333211 234444322 1 3445566
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhc-cCcHHHHHHHHHHHHHHHHHhHHhh
Q 039062 176 LTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQ-SAELKIRQAAFECLVSISSTYYEKL 254 (871)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~ 254 (871)
+..+-..+. .+.-|..++..|+.++...+.-. .......++..++.++. +.+.-+...|+.+|..++-..|..+
T Consensus 72 ~~~l~~~~~----~~~~Rl~~L~Ll~~~v~~qp~~l-~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l 146 (668)
T PF04388_consen 72 FDKLNDYFV----KPSYRLQALTLLGHFVRSQPPWL-YKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSL 146 (668)
T ss_pred HHHHHHHHc----CchhHHHHHHHHHHHHhcCCchH-HHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchh
Confidence 667777776 34688999999999886533211 11111345666666654 6677788899999999999999999
Q ss_pred HHhHHHHHHHHHHHh
Q 039062 255 APYMQDIYSITAKAV 269 (871)
Q Consensus 255 ~~~~~~l~~~~~~~~ 269 (871)
.+|++.++.++.+.+
T Consensus 147 ~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 147 GPHLPDLFNIFGRLL 161 (668)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999887776
No 296
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=78.04 E-value=28 Score=29.38 Aligned_cols=74 Identities=11% Similarity=-0.010 Sum_probs=51.0
Q ss_pred CcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHH--HHHHHHHH----Hc-cCCCcHHHHHHHHHHHH
Q 039062 363 DIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVN--VALSFMLS----AL-TKDPNNHVKDTTAWTLG 435 (871)
Q Consensus 363 ~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~--~i~~~l~~----~l-~~d~~~~vr~~a~~~l~ 435 (871)
.....+...+...+.+.+|++..-|+.++..++.+++ +.+..++. ..+..++. .. ..+.+..||..+...+.
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g-~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCG-ERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc-HHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 3456788888899999999999999999999999987 44444432 22222222 11 13557889988887765
Q ss_pred HH
Q 039062 436 RI 437 (871)
Q Consensus 436 ~~ 437 (871)
..
T Consensus 112 ~w 113 (115)
T cd00197 112 LW 113 (115)
T ss_pred HH
Confidence 43
No 297
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=77.67 E-value=95 Score=32.42 Aligned_cols=87 Identities=17% Similarity=0.121 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHH
Q 039062 383 QREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITV 462 (871)
Q Consensus 383 ~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~ 462 (871)
.|...+.++..+.. . . + -..++..+.+.+.++.|+......+.+++.-..... ...-+.++..
T Consensus 3 ~r~~~~~~L~~l~~-~--~-~---s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~----------~~~~~~~~~~ 65 (339)
T PF12074_consen 3 QRVLHASMLSSLPS-S--S-L---SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLS----------SELPKKVVDA 65 (339)
T ss_pred HHHHHHHHHHhCCC-c--c-h---HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhC----------cCCCHHHHHH
Confidence 45555556665554 2 1 2 234445555555367888888888888777666552 1223688889
Q ss_pred HHHhccC-ChHHHHHHHHHHHHHHh
Q 039062 463 LLQSMKD-TPNVAEKACGALYFLAQ 486 (871)
Q Consensus 463 l~~~l~d-~~~v~~~a~~~l~~l~~ 486 (871)
+.+.+++ .+.+|..-+.++...+.
T Consensus 66 ~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 66 FKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 9999997 45588777777766654
No 298
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=77.61 E-value=53 Score=29.43 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCc---chhh-hHHHHHHHHHHHhhhhhhhhhHhH
Q 039062 574 GELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSA---TVHE-EAMLAIGALAYAAGLDFAKYMPDF 649 (871)
Q Consensus 574 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~---~~~~-~a~~~l~~l~~~~~~~~~~~l~~i 649 (871)
..+-..+++++..++-+++... |.|..-.+++.-..-+...+. ..|. .-+..+..+...++.-+.||...+
T Consensus 35 ~~vE~~v~~~~~~lV~KLnE~~-----FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~l 109 (153)
T PF08146_consen 35 DEVESSVISAFVSLVLKLNEAT-----FRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYL 109 (153)
T ss_pred HHHHHHHHHHHHHHHHHcccch-----hHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566678899999999998764 888888888877665544322 2232 346678888888888999999998
Q ss_pred HHHHHhhhcC
Q 039062 650 YKYLEMGLQN 659 (871)
Q Consensus 650 ~~~l~~~l~~ 659 (871)
++.....|+.
T Consensus 110 l~~~~~~L~~ 119 (153)
T PF08146_consen 110 LDNAVDLLKQ 119 (153)
T ss_pred HHHHHHHHHH
Confidence 8887777753
No 299
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=77.56 E-value=25 Score=30.61 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=58.0
Q ss_pred hHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccH--HHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhcc
Q 039062 648 DFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYC--DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGE 725 (871)
Q Consensus 648 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~ 725 (871)
..+..|.+.+.+. ++.+...|+.++..+++++|..|...+ ..+++.|...++.......|+..++..+..-+..++.
T Consensus 37 ~a~r~l~krl~~~-n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 37 DAVRLLKKRLNNK-NPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 4566666777754 568888999999999999997765543 5688888888877653334888888888888887753
No 300
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=77.48 E-value=31 Score=30.08 Aligned_cols=78 Identities=12% Similarity=0.054 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh-H-hHHHHHHhhhcC--CcchhHHHHHHHHHHHHHHHh
Q 039062 605 ADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM-P-DFYKYLEMGLQN--FEEYQVCAVTVGVVGDICRAL 680 (871)
Q Consensus 605 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l-~-~i~~~l~~~l~~--~~~~~v~~~a~~~l~~l~~~~ 680 (871)
....+..|..-++.+++.++-.|+.+|..+++.+|..|...+ . .++..+.+.+.+ ..+..|+..++.++..-...+
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 345677777888888888999999999999999998776544 2 455556666654 345689999999999888877
Q ss_pred hh
Q 039062 681 EE 682 (871)
Q Consensus 681 ~~ 682 (871)
+.
T Consensus 115 ~~ 116 (133)
T cd03561 115 GG 116 (133)
T ss_pred cC
Confidence 64
No 301
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.46 E-value=2e+02 Score=36.02 Aligned_cols=103 Identities=15% Similarity=0.285 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhc----------cCcH--HHHHHHHHHHHHHHHHhHHhh
Q 039062 187 EMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQ----------SAEL--KIRQAAFECLVSISSTYYEKL 254 (871)
Q Consensus 187 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~----------~~~~--~~~~~a~~~l~~l~~~~~~~~ 254 (871)
+....+|..+++.+..++.-.++.|.. .+|..++.+++.... ..++ .....|+..+..+...+++.+
T Consensus 1185 ~~~~~vr~~al~vlF~il~~~g~~F~~-~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l 1263 (1514)
T KOG0929|consen 1185 DYRLEVRKRALEVLFDILKEHGDDFSK-EFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQL 1263 (1514)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhhccH-HHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999988766767764 456666666655432 1111 234577777788888888888
Q ss_pred HHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHH
Q 039062 255 APYMQDIYSITAKAVREDEEPVALQAIEFWSSICDE 290 (871)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~ 290 (871)
...++.++..+..+++.++..+......++..+...
T Consensus 1264 ~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~ 1299 (1514)
T KOG0929|consen 1264 NNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSS 1299 (1514)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHh
Confidence 888889999898999998888887777777776553
No 302
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=77.12 E-value=9.2 Score=34.47 Aligned_cols=129 Identities=14% Similarity=0.113 Sum_probs=83.2
Q ss_pred cHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH--HHHHHHHHHHccC-
Q 039062 344 NIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV--NVALSFMLSALTK- 420 (871)
Q Consensus 344 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l--~~i~~~l~~~l~~- 420 (871)
++|..+.-++..+.+..++.+-..+..++...+...+......++.++..+..+. ++.....+ +.+++.+.... .
T Consensus 20 ~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~-~dv~~~l~~~eg~~~~l~~~~-~~ 97 (157)
T PF11701_consen 20 EVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGP-PDVGSELFLSEGFLESLLPLA-SR 97 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT-HHHHHHHCCTTTHHHHHHHHH-H-
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCC-HHHHHHHHhhhhHHHHHHHHH-hc
Confidence 5777777777777666666666777788887777655556777777888887775 45444332 45666677666 5
Q ss_pred -CCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC--ChH-HHHHHHHHHH
Q 039062 421 -DPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD--TPN-VAEKACGALY 482 (871)
Q Consensus 421 -d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~-v~~~a~~~l~ 482 (871)
..+..+..+++.++..-+..-. .........++.|.+..+. +.. ++..|...|.
T Consensus 98 ~~~~~~~~~~~lell~aAc~d~~--------~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 98 KSKDRKVQKAALELLSAACIDKS--------CRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CTS-HHHHHHHHHHHHHHTTSHH--------HHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccHH--------HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 6788889999999877665432 1233445556666666643 344 6666666553
No 303
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=76.73 E-value=17 Score=31.68 Aligned_cols=80 Identities=15% Similarity=0.073 Sum_probs=58.9
Q ss_pred CchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhH-HHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHhhh
Q 039062 128 QWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHV-NKILTAVVQGMNAS-EMNNDVRLAATRALYNALS 205 (871)
Q Consensus 128 ~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~~i~~~l~~~l~~~-~~~~~vr~~al~~l~~~~~ 205 (871)
.=.+.+..|...+.++++.+...|+.++..++..+ +..|..... ..++..+...+.+. ..+..||..++..+..|..
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNc-g~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNC-GKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC-ChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 44678888999999999999999999999999998 554422211 24444455555532 5788999999999999876
Q ss_pred cch
Q 039062 206 FAQ 208 (871)
Q Consensus 206 ~~~ 208 (871)
..+
T Consensus 113 ~f~ 115 (133)
T cd03561 113 SFG 115 (133)
T ss_pred Hhc
Confidence 543
No 304
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=76.59 E-value=5.7 Score=31.52 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhh
Q 039062 382 RQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFL 441 (871)
Q Consensus 382 ~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~ 441 (871)
..|.+++..|+++.... +-.+.++++.++..+.... .| ...|+.++-.+++.+-...
T Consensus 4 ~~rH~~VLGL~Alv~a~-Py~vP~w~P~~l~~La~~~-~~-~~~I~~tvk~tl~eFkrtH 60 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAF-PYDVPPWMPEVLEELARHA-ND-PQPIRTTVKKTLSEFKRTH 60 (90)
T ss_dssp HHHHHHHHHHHHHHTT--S--SS-HHHHHHHHHHTTS-SS--SSHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHh-CC-CchHHHHHHHHHHHHHHhC
Confidence 46899999999999987 6777889999999888888 76 4458888888888876654
No 305
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=76.07 E-value=43 Score=29.55 Aligned_cols=75 Identities=7% Similarity=0.005 Sum_probs=57.9
Q ss_pred chHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH--HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhc
Q 039062 367 LVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV--NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 367 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (871)
.....|...+.+.++++...|+.++..++.+|+ ..+...+ ..++..+...+....++.|+..++..+...+..+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG-~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCG-THFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC-HHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 456667888888999999999999999999997 4443333 45666666666236788999999999988888775
No 306
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=75.52 E-value=21 Score=30.49 Aligned_cols=73 Identities=16% Similarity=0.244 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 039062 405 HIVNVALSFMLSALTK-DPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGALYF 483 (871)
Q Consensus 405 ~~l~~i~~~l~~~l~~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~~l~~ 483 (871)
.+++.++|.+...+ . ...++.|.+++..++.++...+ ..++.+..++..+.+....... ...+..++..
T Consensus 2 ~~l~~lLP~l~~~L-~~s~~~d~~~a~ymIl~~La~k~~--------L~~~~l~~l~~~i~~~~~~~~~-~~~~l~~L~~ 71 (121)
T PF12397_consen 2 DILPRLLPFLLKGL-KSSSSPDLQAAAYMILSVLASKVP--------LSDEVLNALMESILKNWTQETV-QRQALICLIV 71 (121)
T ss_pred cHHHHHHHHHHHHH-ccCCcHHHHHHHHHHHHHHHhhcC--------CcHHHHHHHHHHHHhccccchh-HHHHHHHHHH
Confidence 35788999999999 7 8889999999999999998774 3455555666665555443222 4566666776
Q ss_pred HHhh
Q 039062 484 LAQG 487 (871)
Q Consensus 484 l~~~ 487 (871)
+++.
T Consensus 72 l~q~ 75 (121)
T PF12397_consen 72 LCQS 75 (121)
T ss_pred HHHc
Confidence 6653
No 307
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=75.37 E-value=19 Score=30.57 Aligned_cols=88 Identities=20% Similarity=0.261 Sum_probs=56.9
Q ss_pred HHHHHhhhcCC-CCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccc---hhhHHHHHHHHHhhhcC------
Q 039062 116 IAKVAGIELPQ-KQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVE---QDHVNKILTAVVQGMNA------ 185 (871)
Q Consensus 116 l~~i~~~~~~~-~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~---~~~~~~i~~~l~~~l~~------ 185 (871)
+..|+...+.. ....++...|...+++.++.++..+|++|.++|... ++.|- +.+.. ++..+.++-..
T Consensus 22 ~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G-~~~f~~~~~~~~~-~Ik~~~~f~g~~Dp~~G 99 (122)
T cd03572 22 YEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG-NSDFKRELQRNSA-QIRECANYKGPPDPLKG 99 (122)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC-CHHHHHHHHHhHH-HHHHHHHcCCCCCcccC
Confidence 34444443322 467889999999999989999999999999999987 43331 12222 23333332221
Q ss_pred CCCCHHHHHHHHHHHHHhhh
Q 039062 186 SEMNNDVRLAATRALYNALS 205 (871)
Q Consensus 186 ~~~~~~vr~~al~~l~~~~~ 205 (871)
.++...||..|-+++..+..
T Consensus 100 d~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 100 DSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred cchhHHHHHHHHHHHHHHhc
Confidence 23567788888888776543
No 308
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.80 E-value=2.2e+02 Score=35.09 Aligned_cols=153 Identities=12% Similarity=0.179 Sum_probs=94.2
Q ss_pred cCCchHHHHHHHHHHHHHHhhhcC--CCCchHHHHHHHHhhcCCCh---HHHHHHHHHHHHHhhccCCCccchhhHHHHH
Q 039062 102 TSTVADARSTSSQVIAKVAGIELP--QKQWPELIVSLLSNVHQLPA---HVKQATLETLGYLCEEVSPDVVEQDHVNKIL 176 (871)
Q Consensus 102 ~~~~~~vr~~~a~~l~~i~~~~~~--~~~~~~ll~~L~~~l~~~~~---~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~ 176 (871)
.++..++|...-.++-.|....+. -..|+.+++.|-.....+.+ .+..-+..+|.-++.+. -..+.......++
T Consensus 852 s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDf-LqSLp~sci~~li 930 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDF-LQSLPTSCILDLI 930 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcc-hhcCChHHHHHHH
Confidence 344456666555666666654322 13599998888866655532 34456777787777665 2223345566666
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchh-ccc------------------------ChhhHHHHHHHHHHhhccC
Q 039062 177 TAVVQGMNASEMNNDVRLAATRALYNALSFAQA-NFS------------------------NDMERDYIMRVVCEATQSA 231 (871)
Q Consensus 177 ~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~-~~~------------------------~~~~~~~i~~~l~~~l~~~ 231 (871)
..+....++ ..+.++-..|+..+=.+-.+... .++ .+..|-.++..+.++..++
T Consensus 931 dtl~~fs~Q-ktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ds 1009 (1610)
T KOG1848|consen 931 DTLLVFSRQ-KTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDS 1009 (1610)
T ss_pred HHHHHHHhh-hccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccc
Confidence 666665554 56667777777655444333211 000 0112233566677777888
Q ss_pred cHHHHHHHHHHHHHHHHHhHHhhHH
Q 039062 232 ELKIRQAAFECLVSISSTYYEKLAP 256 (871)
Q Consensus 232 ~~~~~~~a~~~l~~l~~~~~~~~~~ 256 (871)
.++||..|++++-.++..++..+.+
T Consensus 1010 r~eVRngAvqtlfri~~Shg~~l~~ 1034 (1610)
T KOG1848|consen 1010 RAEVRNGAVQTLFRIFNSHGSKLGT 1034 (1610)
T ss_pred hHHHhhhHHHHHHHHHhhhcccCCh
Confidence 8999999999999999887665554
No 309
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=74.79 E-value=93 Score=30.87 Aligned_cols=193 Identities=15% Similarity=0.151 Sum_probs=102.4
Q ss_pred hhHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhcccCC--CC-CCCcchHHHHHHHHHHhhccCC-hh-hhhHHHHHHH
Q 039062 454 ANCQQIITVLLQSMKDTPNVAEKACGALYFLAQGYEDVG--PS-SPLTPFFQEIVQSLLTVTHRED-AG-ESRLRTAAYE 528 (871)
Q Consensus 454 ~~~~~il~~l~~~l~d~~~v~~~a~~~l~~l~~~~~~~~--~~-~~l~~~~~~il~~l~~~l~~~~-~~-~~~vr~~a~~ 528 (871)
..++.+-+.+++++.. +.-.+.+...|..+...-.+.. +. ..+.-.+-..++.++..+.+++ .. ++.++ ...+
T Consensus 60 ~~f~Glq~Ll~KGL~S-s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~-~~A~ 137 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRS-SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECI-EIAE 137 (262)
T ss_pred CCchhHHHHHhCccCC-CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHH-HHHH
Confidence 4567788888888764 2223344555666654322211 11 1122223344455555555443 00 12333 4556
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHH
Q 039062 529 TLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQI 608 (871)
Q Consensus 529 ~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i 608 (871)
.|+.+++..+. +-+..++..+.+. .. .+.++ . +-..+..+...+ +..+..++
T Consensus 138 ~La~~a~~~~~---~~La~il~~ya~~-------~f---r~~~d---f---l~~v~~~l~~~f---------~P~~~~~~ 189 (262)
T PF14225_consen 138 ALAQVAEAQGL---PNLARILSSYAKG-------RF---RDKDD---F---LSQVVSYLREAF---------FPDHEFQI 189 (262)
T ss_pred HHHHHHHhCCC---ccHHHHHHHHHhc-------CC---CCHHH---H---HHHHHHHHHHHh---------CchhHHHH
Confidence 66666655442 2222232222211 00 01111 1 122333333333 23456788
Q ss_pred HHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh
Q 039062 609 MGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE 681 (871)
Q Consensus 609 ~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 681 (871)
+..++.++.++...+|...+..|..+.....-. .|+-++++..+.+.++.+ ....|+.++..+....+
T Consensus 190 l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~----~~~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 190 LTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTD----LWMEALEVLDEIVTRSG 257 (262)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCc----cHHHHHHHHHHHHhhcc
Confidence 888999999888889999999999998776533 346677888888887632 34457777766655544
No 310
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=74.66 E-value=1.1e+02 Score=31.83 Aligned_cols=114 Identities=15% Similarity=0.143 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHH
Q 039062 147 VKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCE 226 (871)
Q Consensus 147 ~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~ 226 (871)
.|.....+|..+.. . .....++..+...+.. +.+.......++++.....+... +.-+.+++.+..
T Consensus 3 ~r~~~~~~L~~l~~-~-------~~s~~i~~~l~~~~~K-E~nE~aL~~~l~al~~~~~~~~~-----~~~~~~~~~~~k 68 (339)
T PF12074_consen 3 QRVLHASMLSSLPS-S-------SLSSKIVQGLSPLLSK-ESNEAALSALLSALFKHLFFLSS-----ELPKKVVDAFKK 68 (339)
T ss_pred HHHHHHHHHHhCCC-c-------chHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHhCc-----CCCHHHHHHHHH
Confidence 45555555554432 1 1345666666666664 78889999999999998766521 122678888888
Q ss_pred hhccCcHHHHHHHHHHHHHHHH-----HhHHhhHHhHHHHHHHHHHHhhCCCh
Q 039062 227 ATQSAELKIRQAAFECLVSISS-----TYYEKLAPYMQDIYSITAKAVREDEE 274 (871)
Q Consensus 227 ~l~~~~~~~~~~a~~~l~~l~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~ 274 (871)
.+.+..+.+|+.-+.++...+. .......+.++.+++.+-....++-.
T Consensus 69 Gl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~ 121 (339)
T PF12074_consen 69 GLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQ 121 (339)
T ss_pred HhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 8888888899999999998875 23455566667777777666666544
No 311
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=74.61 E-value=2.5e+02 Score=35.75 Aligned_cols=117 Identities=18% Similarity=0.246 Sum_probs=74.0
Q ss_pred hhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHH
Q 039062 402 KLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGA 480 (871)
Q Consensus 402 ~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~ 480 (871)
.+..|++.++...-..+ ..+++.|+..+......+...+. ..+-+.++..|+..+.+ +..-...|...
T Consensus 428 vL~~~f~siL~la~~Ll-~S~e~~v~~FG~~~Y~~lF~~fd----------s~~qqeVv~~Lvthi~sg~~~ev~~aL~v 496 (1426)
T PF14631_consen 428 VLKDYFPSILSLAQSLL-RSKEPSVREFGSHLYKYLFKEFD----------SYCQQEVVGALVTHIGSGNSQEVDAALDV 496 (1426)
T ss_dssp HHTTSHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHHHSS-----------HHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHhhcc----------chhHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 35556777787777888 99999999888877666665542 12335678888777653 33333566777
Q ss_pred HHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcC
Q 039062 481 LYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSST 538 (871)
Q Consensus 481 l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~ 538 (871)
|..++... ++.+.|| ..++..+++.+.+-. ...+| .++..++.++-..+
T Consensus 497 L~~L~~~~-----~~~l~~f-a~~l~giLD~l~~Ls--~~qiR-~lf~il~~La~~~~ 545 (1426)
T PF14631_consen 497 LCELAEKN-----PSELQPF-ATFLKGILDYLDNLS--LQQIR-KLFDILCTLAFSDS 545 (1426)
T ss_dssp HHHHHHH------HHHHHHT-HHHHHGGGGGGGG----HHHHH-HHHHHHHHHHHHHS
T ss_pred HHHHHhcc-----HHHHHHH-HHHHHHHHHHHhcCC--HHHHH-HHHHHHHHHhcCCc
Confidence 77777542 3445555 344555666666554 45666 57888888876554
No 312
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=74.46 E-value=5.3 Score=25.79 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=24.9
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHh
Q 039062 410 ALSFMLSALTKDPNNHVKDTTAWTLGRIF 438 (871)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~~~ 438 (871)
.++.++..+ .++++.++..++|+|++++
T Consensus 13 ~i~~L~~ll-~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELL-KSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHH-cCCCHHHHHHHHHHHHHHc
Confidence 578888889 8889999999999999875
No 313
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=74.44 E-value=10 Score=30.41 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=45.4
Q ss_pred CcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHH
Q 039062 660 FEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIA 720 (871)
Q Consensus 660 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~ 720 (871)
.+.+.+|..|..+++.+++.++......-+.++..+.+.+.+++.+....-.|+.++..+.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 4578999999999999999988665555578999999999877434444455666665543
No 314
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.15 E-value=1e+02 Score=31.12 Aligned_cols=312 Identities=14% Similarity=0.137 Sum_probs=166.3
Q ss_pred CCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhc
Q 039062 127 KQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSF 206 (871)
Q Consensus 127 ~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 206 (871)
..++-++..+. ..++++......++.++..+...- |+.++.+-..-++ ..+..+..+.++-...+.++......
T Consensus 104 ga~~~~it~~~-la~~~~~~~l~ksL~al~~lt~~q-pdl~da~g~~vvv----~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 104 GAHDALITLLE-LAESPNESVLKKSLEAINSLTHKQ-PDLFDAEAMAVVL----KLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred CCcchhhhHHH-HhhCCchhHHHHHHHHHHHhhcCC-cchhccccHHHHH----HHHhcccchHHHHHHHHHHHHHHHHH
Confidence 34555555444 467788888889999999988777 7777444444333 33333246777888888887774322
Q ss_pred chhcccChhh-HHHHHHHHHHhhccC-cHHHHHHHHHHHHHHHHH---------hHHhhHHhHH-HHHHHHHHHhh-CCC
Q 039062 207 AQANFSNDME-RDYIMRVVCEATQSA-ELKIRQAAFECLVSISST---------YYEKLAPYMQ-DIYSITAKAVR-EDE 273 (871)
Q Consensus 207 ~~~~~~~~~~-~~~i~~~l~~~l~~~-~~~~~~~a~~~l~~l~~~---------~~~~~~~~~~-~l~~~~~~~~~-~~~ 273 (871)
.. ...+.+ ...+++.+.+.+... ..++...++..+..+.-. .+.+-..... .++..+...++ -.+
T Consensus 178 hE--~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~d 255 (461)
T KOG4199|consen 178 HE--VNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGID 255 (461)
T ss_pred hH--HHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCC
Confidence 11 000001 123455555554432 234666677777665522 1111111111 12333333333 123
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhh-hhHHHHHHHHhcccCCcccccccccHhHHHHHH
Q 039062 274 EPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALP-ALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTC 352 (871)
Q Consensus 274 ~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~ 352 (871)
+++-......+..++-.. .+.+.+.. .=+..++..|.+..++ ..|..+..|
T Consensus 256 p~~L~~l~~tl~~lAVr~--------------------E~C~~I~e~GGl~tl~~~i~d~n~~--------~~r~l~k~~ 307 (461)
T KOG4199|consen 256 PDSLVSLSTTLKALAVRD--------------------EICKSIAESGGLDTLLRCIDDSNEQ--------GNRTLAKTC 307 (461)
T ss_pred ccHHHHHHHHHHHHHHHH--------------------HHHHHHHHccCHHHHHHHHhhhchh--------hHHHHHHHH
Confidence 444444444555443221 01111100 1134455555332221 456666677
Q ss_pred HHHHHHHcCCC----------cccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHH-HHHHHHHHHccCC
Q 039062 353 LGLVARTVGDD----------IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVN-VALSFMLSALTKD 421 (871)
Q Consensus 353 l~~l~~~~~~~----------~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~-~i~~~l~~~l~~d 421 (871)
+..+....|.. ..+.+......+ +.++.+-+.++.+++.+.--. ++.-...+. ..-...++.+..+
T Consensus 308 lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h--~~~p~Vi~~~~a~i~~l~LR~-pdhsa~~ie~G~a~~avqAmkah 384 (461)
T KOG4199|consen 308 LSLLRALAGSDSVKSTIVEKGGLDKIITLALRH--SDDPLVIQEVMAIISILCLRS-PDHSAKAIEAGAADLAVQAMKAH 384 (461)
T ss_pred HHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc--CCChHHHHHHHHHHHHHHhcC-cchHHHHHhcchHHHHHHHHHhC
Confidence 77776666532 233444444433 345678888888888776543 454444443 2333445555245
Q ss_pred C-cHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhcc-CChHHHHHHHHHHHHH
Q 039062 422 P-NNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMK-DTPNVAEKACGALYFL 484 (871)
Q Consensus 422 ~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d~~~v~~~a~~~l~~l 484 (871)
| ...|+..++|.+.++...-. ......+..=++.|+..-. .++.++..+-.+|..+
T Consensus 385 P~~a~vQrnac~~IRNiv~rs~-------~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 385 PVAAQVQRNACNMIRNIVVRSA-------ENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHhhh-------hccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 5 45789999999999988765 3344455555666665544 4777887777888766
No 315
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=73.67 E-value=1.7e+02 Score=33.39 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=65.2
Q ss_pred CChhhHHHHHHHHHHhhcCCCh--hhhhHHH---HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccch
Q 039062 379 PDWRQREAATYAFGSILEGPSP--DKLLHIV---NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQ 453 (871)
Q Consensus 379 ~~~~~r~~a~~~l~~l~~~~~~--~~~~~~l---~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 453 (871)
.+...-++++-+|..+.-+... ..+...+ ...+|.+...+ ..++..|..+++-+|.+++.... ...
T Consensus 531 ~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll-~~~~~~vv~s~a~~LrNls~d~r--------nk~ 601 (717)
T KOG1048|consen 531 KNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELL-RNDDSDVVRSAAGALRNLSRDIR--------NKE 601 (717)
T ss_pred cchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHH-hcCCchHHHHHHHHHhhhccCch--------hhh
Confidence 3445667777777777655321 1111111 34568889999 88889998888899999887653 123
Q ss_pred hhHHHHHHHHHHhccC--C-----hHHHHHHHHHHHHHH
Q 039062 454 ANCQQIITVLLQSMKD--T-----PNVAEKACGALYFLA 485 (871)
Q Consensus 454 ~~~~~il~~l~~~l~d--~-----~~v~~~a~~~l~~l~ 485 (871)
..-...++.|+.+|-+ + +.....+|.+|.+++
T Consensus 602 ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 602 LIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV 640 (717)
T ss_pred hhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence 3335688999999875 2 456677788888776
No 316
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.56 E-value=2.1e+02 Score=34.36 Aligned_cols=63 Identities=11% Similarity=0.160 Sum_probs=52.6
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Q 039062 181 QGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISST 249 (871)
Q Consensus 181 ~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 249 (871)
.... |-.+.+|.-++.-++.|+...+..|.. +.++.-+.-.+.+.+..||..++.+|..+.++
T Consensus 294 HRYR--DV~~~IRaiCiqeLgiWi~~yP~~Fl~----dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 294 HRYR--DVDPDIRAICIQELGIWIKSYPEIFLS----DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred eecc--cCchHHHHHHHHHHHHHHHhccHHHhc----chHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 3445 789999999999999999877766643 55677777788899999999999999999987
No 317
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=72.53 E-value=1.3e+02 Score=31.58 Aligned_cols=202 Identities=10% Similarity=0.073 Sum_probs=116.3
Q ss_pred HHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHH
Q 039062 503 EIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCG 582 (871)
Q Consensus 503 ~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (871)
++++.+...+.+.+ .++...+.-+||.+++.-..-..-.-..++..+++.+.... ..++. .+++..+++
T Consensus 315 ~~l~~~~sw~~S~d---~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~-----~vdgn---V~~qhA~ls 383 (604)
T KOG4500|consen 315 QFLDFLESWFRSDD---SNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEK-----DVDGN---VERQHACLS 383 (604)
T ss_pred HHHHHHHHHhcCCc---hhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc-----CCCcc---chhHHHHHH
Confidence 37777788887764 57778899999999886442211122456666666665431 12222 145666888
Q ss_pred HHHHHHHHhCCCCCchhhhhhhH-HHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhh--hHhHHHHHHhhhcC
Q 039062 583 CLQVIIQKLGSSEPTKYVFMQYA-DQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKY--MPDFYKYLEMGLQN 659 (871)
Q Consensus 583 ~l~~l~~~~~~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~--l~~i~~~l~~~l~~ 659 (871)
++.+++--.+.. ..++ ..+.+.++..++...+++...-+..+..+......-.... -+..+..+....++
T Consensus 384 ALRnl~IPv~nk-------a~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks 456 (604)
T KOG4500|consen 384 ALRNLMIPVSNK-------AHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKS 456 (604)
T ss_pred HHHhccccCCch-------hhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhC
Confidence 888776433322 1222 3567788888888888888777777777765443211111 25678888888877
Q ss_pred CcchhHHHHHHHHHHHHHHHhh-hcccccH--HHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhc
Q 039062 660 FEEYQVCAVTVGVVGDICRALE-EKILPYC--DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG 724 (871)
Q Consensus 660 ~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~--~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~ 724 (871)
++...+......++..++++.. .++...+ ...+..++..+..+ +......++-++..+...+.
T Consensus 457 ~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~--hi~mqnEalVal~~~~~~yl 522 (604)
T KOG4500|consen 457 PDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKN--HINMQNEALVALLSTESKYL 522 (604)
T ss_pred CccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHh--hHHHhHHHHHHHHHHHHHhc
Confidence 7665566666667777766633 1111000 11233333333333 34445566666666655543
No 318
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=72.44 E-value=49 Score=29.00 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=55.3
Q ss_pred chHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH--HHHHHHHHHHccC------CCcHHHHHHHHHHHHHHh
Q 039062 367 LVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV--NVALSFMLSALTK------DPNNHVKDTTAWTLGRIF 438 (871)
Q Consensus 367 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l--~~i~~~l~~~l~~------d~~~~vr~~a~~~l~~~~ 438 (871)
..+..+...+++.++++..-|+.++.+++.+|+ ..+...+ ..++..+++.+ . .+++.|+...+..+....
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG-~~fh~evas~~Fl~el~kl~-~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCG-ERFHSEVGKFRFLNELIKLV-SPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC-HHHHHHHHhHHHHHHHHHHh-ccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456667888899999999999999999999997 4443322 34555555555 4 267899999999988888
Q ss_pred hhhc
Q 039062 439 EFLH 442 (871)
Q Consensus 439 ~~~~ 442 (871)
..++
T Consensus 116 ~~f~ 119 (139)
T cd03567 116 LELP 119 (139)
T ss_pred HHhc
Confidence 7764
No 319
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=72.05 E-value=10 Score=28.64 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHhhcCCChhhhhHHH--HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhc
Q 039062 383 QREAATYAFGSILEGPSPDKLLHIV--NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 383 ~r~~a~~~l~~l~~~~~~~~~~~~l--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (871)
..++++++++.++.... .+ +++ ..+++.+++..++.+...+|.+|+++|+-++....
T Consensus 3 ~lKaaLWaighIgss~~--G~-~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~ 61 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPL--GI-QLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE 61 (73)
T ss_pred HHHHHHHHHHhHhcChH--HH-HHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH
Confidence 46789999999988631 11 222 25778888777468889999999999999887653
No 320
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.82 E-value=1.4e+02 Score=31.70 Aligned_cols=139 Identities=17% Similarity=0.207 Sum_probs=68.5
Q ss_pred chHHHHHHHHHHhhcc--ChHHhH--HHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccc
Q 039062 710 PPIFSCFGDIALAIGE--NFEKYL--MYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQL 785 (871)
Q Consensus 710 ~~~~~~l~~i~~~~~~--~~~~~~--~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~ 785 (871)
...+.|+|.++.-.-. .....+ ..++|.+...+.... ++| ++.-.++-.++...-... ....
T Consensus 520 ~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga-----~ed------dLvL~~vi~~GT~a~d~~---cA~L 585 (791)
T KOG1222|consen 520 SFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGA-----DED------DLVLQIVIACGTMARDLD---CARL 585 (791)
T ss_pred HHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCc-----cch------hhhhHHHHHhhhhhhhhH---HHHH
Confidence 3778888888764322 222222 246677777776542 332 122233333333332211 1122
Q ss_pred cccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHH
Q 039062 786 LIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAI 865 (871)
Q Consensus 786 ~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 865 (871)
+.|- .+++.+..+++....++++.-.++-.|-.+.++- .-..+..+-+-....+-.+.-+.+..+|+.+-+++.-|
T Consensus 586 la~a--~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He--~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIi 661 (791)
T KOG1222|consen 586 LAPA--KLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHE--LTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDII 661 (791)
T ss_pred hCcc--ccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--HHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3330 2444444444443456777777777777777762 11112111111223344444467888888887776554
Q ss_pred H
Q 039062 866 N 866 (871)
Q Consensus 866 ~ 866 (871)
.
T Consensus 662 a 662 (791)
T KOG1222|consen 662 A 662 (791)
T ss_pred H
Confidence 3
No 321
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.17 E-value=25 Score=34.80 Aligned_cols=102 Identities=19% Similarity=0.164 Sum_probs=64.4
Q ss_pred HHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCcc
Q 039062 372 IEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPII 451 (871)
Q Consensus 372 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 451 (871)
+...+.+.++.+|.+|+.-+..+... +...+..+-...++.+.+.+ ++..+ -..|..++.+++.... .
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~-~~~~~--~~~a~~alVnlsq~~~--------l 75 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLL-KDLDP--AEPAATALVNLSQKEE--------L 75 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHc-cCccc--ccHHHHHHHHHHhhHH--------H
Confidence 44567788899999998776666554 23455555556778888888 88777 4455667777776542 2
Q ss_pred chhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHH
Q 039062 452 TQANCQQIITVLLQSMKD-TPNVAEKACGALYFLA 485 (871)
Q Consensus 452 ~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~ 485 (871)
....+..++..+...+.| .+......|..+.++.
T Consensus 76 ~~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs 110 (353)
T KOG2973|consen 76 RKKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLS 110 (353)
T ss_pred HHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhc
Confidence 344444444455555555 3555666666666664
No 322
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=71.16 E-value=58 Score=29.16 Aligned_cols=104 Identities=10% Similarity=0.120 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhh-hcccccHHHHHHHHHHHccCCCCC-CcCCc-hHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhh
Q 039062 668 VTVGVVGDICRALE-EKILPYCDGIMTQLLKDLSSNQLH-RSVKP-PIFSCFGDIALAIGENFEKYLMYAMPMLQSAADL 744 (871)
Q Consensus 668 ~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~-~~v~~-~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~ 744 (871)
.++.++-.++-.+. ..+.|.+-.+++.-...+...+.. ...|. ..+..+..++..++.-|.||...++....+.+..
T Consensus 40 ~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~ 119 (153)
T PF08146_consen 40 SVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQ 119 (153)
T ss_pred HHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555655555 568888888888877655543211 11222 3456777788888999999999999998888876
Q ss_pred cccCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 039062 745 SAHTANVDDDMTEYTNSLRNGILEAYSGIF 774 (871)
Q Consensus 745 ~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~ 774 (871)
.......+. .-...++..++.++...+
T Consensus 120 ~~~~~~~~~---~~~~~L~~~vL~~L~~~F 146 (153)
T PF08146_consen 120 FNSSKTESK---SKSWELWRLVLSTLQKCF 146 (153)
T ss_pred hhhccccch---hhHHHHHHHHHHHHHHHH
Confidence 521111110 012456666666665544
No 323
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=70.68 E-value=1e+02 Score=29.48 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=58.2
Q ss_pred ccHhHHH-HHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCC
Q 039062 343 WNIAMAG-GTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKD 421 (871)
Q Consensus 343 ~~~r~~a-~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d 421 (871)
|.+.... ..+++.+.... +.+.+.+.+...|++.-.|.+++.++-..... ...+.++..+...+ .|
T Consensus 100 W~~~D~~~~~~~~~~~~~~-----~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~-~d 166 (213)
T PF08713_consen 100 WATCDSLCSKLLGPLLKKH-----PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALL-KD 166 (213)
T ss_dssp HHHHHHHTHHHHHHHHHHH-----GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCT-TG
T ss_pred chhhhHHHHHHHHHHHHhh-----HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHc-CC
Confidence 7554333 44455543332 67788888888887766666665544322221 34567788888888 99
Q ss_pred CcHHHHHHHHHHHHHHhhhhc
Q 039062 422 PNNHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 422 ~~~~vr~~a~~~l~~~~~~~~ 442 (871)
++..||.+..|+|..++...+
T Consensus 167 ~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 167 EEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp S-HHHHHHHHHHHHHHCTT-H
T ss_pred chHHHHHHHHHHHHHHHHhCH
Confidence 999999999999999887654
No 324
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=70.54 E-value=3.1e+02 Score=35.02 Aligned_cols=167 Identities=16% Similarity=0.138 Sum_probs=97.1
Q ss_pred HHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHh-HHHHHHHHHHHHhhcccCCCC
Q 039062 673 VGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKY-LMYAMPMLQSAADLSAHTANV 751 (871)
Q Consensus 673 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~~ 751 (871)
+.........-+..|++.++...-.++.+. +..++..+......+-... ..| =..++..|+..+...
T Consensus 418 l~~~f~~~~~vL~~~f~siL~la~~Ll~S~--e~~v~~FG~~~Y~~lF~~f----ds~~qqeVv~~Lvthi~sg------ 485 (1426)
T PF14631_consen 418 LDQTFKGHSEVLKDYFPSILSLAQSLLRSK--EPSVREFGSHLYKYLFKEF----DSYCQQEVVGALVTHIGSG------ 485 (1426)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHhhc----cchhHHHHHHHHHHHHcCC------
Confidence 344444445667889999999888888876 4555555555444444443 232 345777776666443
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccc
Q 039062 752 DDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGS 831 (871)
Q Consensus 752 d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~ 831 (871)
. ..++ ..+++.+..++.. .++.+.||.. ++.-++..+.+- ....+|+ .+..++.++-.-+..-.
T Consensus 486 ~------~~ev-~~aL~vL~~L~~~-----~~~~l~~fa~-~l~giLD~l~~L-s~~qiR~-lf~il~~La~~~~~~~s- 549 (1426)
T PF14631_consen 486 N------SQEV-DAALDVLCELAEK-----NPSELQPFAT-FLKGILDYLDNL-SLQQIRK-LFDILCTLAFSDSSSSS- 549 (1426)
T ss_dssp -------HHHH-HHHHHHHHHHHHH------HHHHHHTHH-HHHGGGGGGGG---HHHHHH-HHHHHHHHHHHHSS----
T ss_pred c------HHHH-HHHHHHHHHHHhc-----cHHHHHHHHH-HHHHHHHHHhcC-CHHHHHH-HHHHHHHHhcCCcccch-
Confidence 1 1122 4678888888765 3455666643 333333334431 2344555 59999988865433222
Q ss_pred cccchHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHh
Q 039062 832 LIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINKAI 869 (871)
Q Consensus 832 ~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (871)
...+. +..++..-.++.+..++..++-|.-.+-..+
T Consensus 550 ~i~de--l~ivIRKQLss~~~~~K~~GIIGav~~i~~l 585 (1426)
T PF14631_consen 550 SIQDE--LHIVIRKQLSSSNPKYKRIGIIGAVMMIKHL 585 (1426)
T ss_dssp HHHHH--HHHHHHHHHT-SSHHHHHHHHHHHHHHHHHT
T ss_pred hhHHH--HHHHHHHhhcCCcHHHHHHhHHHHHHHHHHH
Confidence 33332 5667888888889999988888777665544
No 325
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=70.45 E-value=2.2e+02 Score=33.26 Aligned_cols=130 Identities=10% Similarity=0.033 Sum_probs=73.0
Q ss_pred HhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhc--ch---hccc
Q 039062 138 SNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSF--AQ---ANFS 212 (871)
Q Consensus 138 ~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~--~~---~~~~ 212 (871)
...++.++..+..|-+.|...-.. . ++.-.+.....+...+..+|.+|+-.+.+.+.. .. ....
T Consensus 11 ~~aqs~~p~s~k~AE~~Lrqwe~q--------~---gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~ 79 (947)
T COG5657 11 DLAQSPDPPSVKCAEERLRQWEKQ--------H---GFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSIL 79 (947)
T ss_pred HhhcCCCCchHhhHHHHHHhhhcc--------c---cHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCC
Confidence 345666766666666666553211 1 122333444443246889999999999997642 11 0010
Q ss_pred ChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH-hHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHH
Q 039062 213 NDMERDYIMRVVCEATQSAELKIRQAAFECLVSISST-YYEKLAPYMQDIYSITAKAVREDEEPVALQAIEF 283 (871)
Q Consensus 213 ~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~ 283 (871)
. ++...+-..++..+-..+.....+...++..++.. +|+.|...++++.. .+++.|.......+..
T Consensus 80 p-~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~----~Ls~~D~~tn~~~L~~ 146 (947)
T COG5657 80 P-DENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLS----LLSEKDMVTNENSLRV 146 (947)
T ss_pred C-ccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHh----hhcccchHHHHHHHHH
Confidence 1 11123444555555445556666778888888765 78888887777766 4555444333333333
No 326
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=70.32 E-value=67 Score=27.32 Aligned_cols=82 Identities=18% Similarity=0.303 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCC--CCChhHHHHHHHHHHH
Q 039062 688 CDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTA--NVDDDMTEYTNSLRNG 765 (871)
Q Consensus 688 ~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~--~~d~~~~~~~~~~r~~ 765 (871)
+..+++.|.+.|++. +.-||.-++..|..++...++.|..++..=...+..+......++ .+|. ....+|..
T Consensus 36 ~~ei~d~L~kRL~~~--~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~----~~~~VR~~ 109 (122)
T cd03572 36 CQELLEYLLKRLKRS--SPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDS----LNEKVREE 109 (122)
T ss_pred HHHHHHHHHHHhcCC--CCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcc----hhHHHHHH
Confidence 468999999999987 688999999999999999888899888877776666555442221 1221 34678888
Q ss_pred HHHHHHHHhh
Q 039062 766 ILEAYSGIFQ 775 (871)
Q Consensus 766 ~~~~~~~l~~ 775 (871)
+-+++..|..
T Consensus 110 A~El~~~if~ 119 (122)
T cd03572 110 AQELIKAIFS 119 (122)
T ss_pred HHHHHHHHhc
Confidence 8887776654
No 327
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=70.16 E-value=49 Score=29.16 Aligned_cols=92 Identities=12% Similarity=0.082 Sum_probs=60.9
Q ss_pred HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccH--HHHHHH-HHHHccCCC-CCCcCCchHHHHHHHHHHh
Q 039062 647 PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYC--DGIMTQ-LLKDLSSNQ-LHRSVKPPIFSCFGDIALA 722 (871)
Q Consensus 647 ~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~-l~~~l~~~~-~~~~v~~~~~~~l~~i~~~ 722 (871)
...+-.|.+.+....++.+...|+.++..+++++|..|...+ ..++.. |.+.+.... .+..|+..++..+..-+..
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 345666666665434557888899999999999997776443 467776 777775321 2457888888888888888
Q ss_pred hccC-hHHhHHHHHHHH
Q 039062 723 IGEN-FEKYLMYAMPML 738 (871)
Q Consensus 723 ~~~~-~~~~~~~i~~~l 738 (871)
++.. -.+++..++..|
T Consensus 117 f~~~~~l~~i~~~y~~L 133 (141)
T cd03565 117 FRGSPDLTGVVEVYEEL 133 (141)
T ss_pred hCCCccchHHHHHHHHH
Confidence 7643 123444444333
No 328
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=69.62 E-value=2.5e+02 Score=33.52 Aligned_cols=138 Identities=12% Similarity=0.097 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhhccCCCc---cc-hhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHH
Q 039062 147 VKQATLETLGYLCEEVSPDV---VE-QDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMR 222 (871)
Q Consensus 147 ~r~~al~~l~~l~~~~~~~~---~~-~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~ 222 (871)
...-++.+|..+.... |+. |+ ....-..++.++..+.. ...+++.+.|++.+.....+.+..-...+ ...+.
T Consensus 1741 ~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~-~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~--~~vL~ 1816 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRC-RKHPKLQILALQVILLATANKECVTDLAT--CNVLT 1816 (2235)
T ss_pred HHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHH-cCCchHHHHHHHHHHHHhcccHHHHHHHh--hhHHH
Confidence 4567899999988887 653 32 12233345566666665 68888999999988877655442211111 33566
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhCCChhHHHHHHHHHHHHHH
Q 039062 223 VVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQ-DIYSITAKAVREDEEPVALQAIEFWSSICD 289 (871)
Q Consensus 223 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 289 (871)
.+.+.+. .-|..|..+++.|-.+.+...-.+...-. .++.+.--...+..++.|.+|.+.+..+.-
T Consensus 1817 ~LL~lLH-S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1817 TLLTLLH-SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHHHHHh-cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 6666665 46888999999998887652211111111 122222112234556677777777665533
No 329
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=68.70 E-value=1.2e+02 Score=29.36 Aligned_cols=141 Identities=13% Similarity=0.091 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhhccCCCc---cchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHH
Q 039062 147 VKQATLETLGYLCEEVSPDV---VEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRV 223 (871)
Q Consensus 147 ~r~~al~~l~~l~~~~~~~~---~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~ 223 (871)
..-.|+..++-++.+ |+. |-..+++-.+=.++.....+.+...+|..++..++.++...+......-...++++.
T Consensus 95 RVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 95 RVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred hHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 334566666655554 331 113344433322333222235778899999999999987644321111123567888
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHHHHh---------HHhhHHhHHHHHH-HHHHHhhCCChhHHHHHHHHHHHHHHH
Q 039062 224 VCEATQSAELKIRQAAFECLVSISSTY---------YEKLAPYMQDIYS-ITAKAVREDEEPVALQAIEFWSSICDE 290 (871)
Q Consensus 224 l~~~l~~~~~~~~~~a~~~l~~l~~~~---------~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~a~~~~~~l~~~ 290 (871)
+...+..+++..+..|.-.+..++... ++.|.. +..++. .+....+.++......++.+...++++
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~a-v~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSA-VALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 888888888888888888887776431 111111 222333 333344556666767777777777664
No 330
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=68.04 E-value=1e+02 Score=33.31 Aligned_cols=112 Identities=10% Similarity=0.037 Sum_probs=77.6
Q ss_pred HHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh-HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh--hc
Q 039062 607 QIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM-PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE--EK 683 (871)
Q Consensus 607 ~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~--~~ 683 (871)
++.+.++.+|.+++.-+...+..+++..+--+.+--..++ ..++..+...+.+.++ ..+....|++.++.-++. +.
T Consensus 431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd-aLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD-ALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh-hhhhcchhhhhhhhhcCcchhh
Confidence 5777888888876655555555555555433332222344 3477777777776655 788899999998888776 45
Q ss_pred ccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHH
Q 039062 684 ILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIAL 721 (871)
Q Consensus 684 ~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~ 721 (871)
+.+....=++.+++..+++ .+.+...++..+-++.-
T Consensus 510 f~~Lakig~~kvl~~~NDp--c~~vq~q~lQilrNftc 545 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDP--CFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhhHHhcCHHHHHHHhcCc--ccccHHHHHHHHHhccc
Confidence 6666666678888888877 77888888887777654
No 331
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=67.42 E-value=1.6e+02 Score=30.67 Aligned_cols=95 Identities=19% Similarity=0.254 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHH
Q 039062 189 NNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKA 268 (871)
Q Consensus 189 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 268 (871)
..++....+.+|..++.|-.. ++ ....+.++..+...+.+. .-..++.+|.-.+-..|..+.++++.++.-+.+.
T Consensus 210 ~~D~~~~~~~~Ls~LisYh~~-~~-k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i 284 (356)
T PF03542_consen 210 RADLQVCVFPVLSALISYHSH-FS-KQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSMKKLLPSILLKLSKI 284 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cC-HhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 567888899999999987553 32 223467888877766542 3345666666666667888888888877755443
Q ss_pred hhCCChhHHHHHHHHHHHHHHH
Q 039062 269 VREDEEPVALQAIEFWSSICDE 290 (871)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~l~~~ 290 (871)
.. ...+....+||+..++.-
T Consensus 285 ~t--t~~~Ai~ILEFLs~L~~l 304 (356)
T PF03542_consen 285 ST--TPNMAIHILEFLSSLSRL 304 (356)
T ss_pred cc--chhhHHHHHHHHHHHhhC
Confidence 33 344666789999888774
No 332
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=67.08 E-value=3.3e+02 Score=34.03 Aligned_cols=121 Identities=13% Similarity=0.138 Sum_probs=73.3
Q ss_pred chhhhHHHHHHHHHHHhhhhhhhhh--HhHHHHHHhhhcCC---cchhHHHHHHHHHHHHHHHhhhccccc-----HHHH
Q 039062 622 TVHEEAMLAIGALAYAAGLDFAKYM--PDFYKYLEMGLQNF---EEYQVCAVTVGVVGDICRALEEKILPY-----CDGI 691 (871)
Q Consensus 622 ~~~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~-----~~~i 691 (871)
....+.+.||=++..++.++-..++ +..+-+|+..|.-. ....+...|-..|.++...+. .-.+| -.+.
T Consensus 453 sTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IA-t~E~yRQILR~~NC 531 (2195)
T KOG2122|consen 453 STLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIA-TCEDYRQILRRHNC 531 (2195)
T ss_pred chHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhh-ccchHHHHHHHhhH
Confidence 3456677777777777665444443 56777777777532 223444555555555544443 11223 1577
Q ss_pred HHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhH-HHHHHHHHHHHhhc
Q 039062 692 MTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYL-MYAMPMLQSAADLS 745 (871)
Q Consensus 692 ~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~-~~i~~~l~~~l~~~ 745 (871)
+..|++.|++. +..+-.+++.+|.++....+.+-.-.+ ..-++++.+.+..+
T Consensus 532 Lq~LLQ~LKS~--SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK 584 (2195)
T KOG2122|consen 532 LQTLLQHLKSH--SLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK 584 (2195)
T ss_pred HHHHHHHhhhc--ceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh
Confidence 88899999887 667888999999998877664322112 23456666666554
No 333
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=66.59 E-value=15 Score=33.18 Aligned_cols=127 Identities=15% Similarity=0.202 Sum_probs=68.0
Q ss_pred ChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchh----cccChhhHHH
Q 039062 144 PAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQA----NFSNDMERDY 219 (871)
Q Consensus 144 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~----~~~~~~~~~~ 219 (871)
.++.|..++.++.++.+.. ++.+ .+.+..++..++ ..++.+ -...++.++..+++..++ .|.. +.
T Consensus 18 ~~~~r~~a~v~l~k~l~~~-~~~~-~~~~~~~i~~~~---~~~~~d--~~i~~~~~l~~lfp~~~dv~~~l~~~----eg 86 (157)
T PF11701_consen 18 PEEVRSHALVILSKLLDAA-REEF-KEKISDFIESLL---DEGEMD--SLIIAFSALTALFPGPPDVGSELFLS----EG 86 (157)
T ss_dssp SCCHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHH---CCHHCC--HHHHHHHHHHHHCTTTHHHHHHHCCT----TT
T ss_pred CHhHHHHHHHHHHHHHHHh-HHHH-HHHHHHHHHHHH---ccccch--hHHHHHHHHHHHhCCCHHHHHHHHhh----hh
Confidence 4568888888888886544 3333 333333333333 311223 444566666666554332 2222 34
Q ss_pred HHHHHHHhhc--cCcHHHHHHHHHHHHHHHHH--hHHhhHHhHHHHHHHHHHHhh-CCChh-HHHHHHHHH
Q 039062 220 IMRVVCEATQ--SAELKIRQAAFECLVSISST--YYEKLAPYMQDIYSITAKAVR-EDEEP-VALQAIEFW 284 (871)
Q Consensus 220 i~~~l~~~l~--~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~l~~~~~~~~~-~~~~~-~~~~a~~~~ 284 (871)
+++.+..... .++..+...+++++..-+.. .-..+..+ -++++-...+ ++++. ++..|.-.+
T Consensus 87 ~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~---~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 87 FLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN---YVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH---CHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH---HHHHHHHHHccccchHHHHHHHHHHH
Confidence 6666666666 67888999999999876643 22233222 2333334553 44444 676665443
No 334
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=66.51 E-value=39 Score=29.61 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=53.9
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhc------cCcHHHHHHHHHHHHHHHH
Q 039062 175 ILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQ------SAELKIRQAAFECLVSISS 248 (871)
Q Consensus 175 i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~------~~~~~~~~~a~~~l~~l~~ 248 (871)
.+..+...++ ++++.+...|+..+-.++...+..|..+-....+++-+...+. ..+..++..++..+.....
T Consensus 39 a~rai~krl~--~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQ--SPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3445566666 7888999999999999988777666433333456666666664 2578999999999988887
Q ss_pred HhH
Q 039062 249 TYY 251 (871)
Q Consensus 249 ~~~ 251 (871)
.++
T Consensus 117 ~f~ 119 (139)
T cd03567 117 ELP 119 (139)
T ss_pred Hhc
Confidence 654
No 335
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=63.64 E-value=2.5e+02 Score=31.44 Aligned_cols=96 Identities=16% Similarity=0.159 Sum_probs=60.9
Q ss_pred cHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCc
Q 039062 344 NIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423 (871)
Q Consensus 344 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~ 423 (871)
.+.......+..+....+...++.+-.++.+++-++++-...-+.-+..-+++....+....++. .+-.+++.+ ..+.
T Consensus 243 ~lY~~vl~~Lctfi~~~~~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~-~L~~Lik~l-p~~~ 320 (559)
T PF14868_consen 243 SLYQHVLVHLCTFIASLSPSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVN-LLAHLIKSL-PSSS 320 (559)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHH-HHHHHHHHc-CCcc
Confidence 44555566777777777777888888888888888888888888888888887653233333444 444566666 3222
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 039062 424 NHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 424 ~~vr~~a~~~l~~~~~~~~ 442 (871)
.+ ...-...|+|+...+.
T Consensus 321 ~~-~~~L~~LL~Rl~~~m~ 338 (559)
T PF14868_consen 321 YQ-LINLSILLRRLFFLMA 338 (559)
T ss_pred hh-HhhHHHHHHHHHHhcC
Confidence 22 2223444666665543
No 336
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.08 E-value=2.2e+02 Score=30.69 Aligned_cols=133 Identities=9% Similarity=0.166 Sum_probs=74.3
Q ss_pred cCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHH
Q 039062 141 HQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYI 220 (871)
Q Consensus 141 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i 220 (871)
..-++..|...+.+|--|-.. ..+ ....++..+++.+. .++...|..+..-+...+..+...-...-....+
T Consensus 30 ~~lp~~Lr~~i~~~LiLLrNk---~~i---~~~~LL~lff~l~~--~~dk~lRkllythiv~~Ikn~n~~~kn~klnksl 101 (616)
T KOG2229|consen 30 TVLPPELREKIVKALILLRNK---NLI---VAEDLLELFFPLLR--CGDKNLRKLLYTHIVTTIKNINKKHKNDKLNKSL 101 (616)
T ss_pred ccCCHHHHHHHHHHHHHHhcc---CcC---CHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence 444778888887777655442 222 24567778888888 6777888877765555444322211111111335
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHH
Q 039062 221 MRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWS 285 (871)
Q Consensus 221 ~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~ 285 (871)
-..++..+.++++.--..|+..+..+.... .|.. ..-+.++....-+..+.+...++.|+.
T Consensus 102 q~~~fsml~~~d~~~ak~a~~~~~eL~kr~--iW~d--~~tV~i~~~acf~~~~ki~vs~l~FfL 162 (616)
T KOG2229|consen 102 QAFMFSMLDQSDSTAAKMALDTMIELYKRN--IWND--SKTVNIITTACFSKVPKILVSGLRFFL 162 (616)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHhc--cccc--chhHHHHHHHHhccCcHHHHhhhHHhc
Confidence 556677777777766677777777776542 1221 112233333333445555555555543
No 337
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.45 E-value=2.5e+02 Score=33.69 Aligned_cols=147 Identities=15% Similarity=0.206 Sum_probs=84.3
Q ss_pred HHHHHHHHhh-----cCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhh
Q 039062 131 ELIVSLLSNV-----HQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALS 205 (871)
Q Consensus 131 ~ll~~L~~~l-----~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (871)
++++.++..+ .+-.+.+|.-++.-|+..+..+ |+.|-. ...+.-+-=.|. |.+..||..++++|..+.+
T Consensus 282 ~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~y-P~~Fl~---dsYLKYiGWtLs--Dk~~~VRl~~lkaL~~L~e 355 (1048)
T KOG2011|consen 282 SMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSY-PEIFLS---DSYLKYIGWTLS--DKNGTVRLRCLKALIKLYE 355 (1048)
T ss_pred HHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhc-cHHHhc---chHHHHhcceee--cCccHHHHHHHHHHHHHHh
Confidence 3555555543 2346789999999999998888 765511 122222222344 8999999999999999876
Q ss_pred cchhcccChhhHHHHHHHHHHhh-ccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHH
Q 039062 206 FAQANFSNDMERDYIMRVVCEAT-QSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFW 284 (871)
Q Consensus 206 ~~~~~~~~~~~~~~i~~~l~~~l-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~ 284 (871)
........+.+...+..-+.+.. .+-+..||...+..+.... .+..+.. .=+..+...+-+.++.++..|.+++
T Consensus 356 ~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~--~~g~L~d---~di~~Vy~Li~d~~r~~~~aa~~fl 430 (1048)
T KOG2011|consen 356 KDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLS--SSGLLSD---KDILIVYSLIYDSNRRVAVAAGEFL 430 (1048)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHh--cccccCh---hHHHHHHHHHhccCcchHHHHHHHH
Confidence 52211111122234444454444 3445566655554444332 2222221 1233444566778888999988887
Q ss_pred HHHH
Q 039062 285 SSIC 288 (871)
Q Consensus 285 ~~l~ 288 (871)
..-.
T Consensus 431 ~~k~ 434 (1048)
T KOG2011|consen 431 YKKL 434 (1048)
T ss_pred HHHh
Confidence 6543
No 338
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=61.75 E-value=18 Score=27.37 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHHHH
Q 039062 811 MKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINK 867 (871)
Q Consensus 811 r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 867 (871)
+++++=++|.++..- .-.+++++.++|..+++-+..+.-..+|.+|-|+++.|.+
T Consensus 4 lKaaLWaighIgss~--~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~ 58 (73)
T PF14668_consen 4 LKAALWAIGHIGSSP--LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS 58 (73)
T ss_pred HHHHHHHHHhHhcCh--HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC
Confidence 466788888887752 1224555555799999999988899999999999998864
No 339
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=61.73 E-value=1.7e+02 Score=28.95 Aligned_cols=174 Identities=11% Similarity=0.020 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHHHhhcccC---CCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcC----CCcHH
Q 039062 471 PNVAEKACGALYFLAQGYEDV---GPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSST----DETAP 543 (871)
Q Consensus 471 ~~v~~~a~~~l~~l~~~~~~~---~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~----~~~~~ 543 (871)
|+....++..|..+++.+... .....-...+..+-..++..+.+-. +...-+.+..++..++..+- ..+..
T Consensus 61 Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~r--HrGAfe~~~~~f~~lc~~l~~~~~~~l~~ 138 (255)
T PF10350_consen 61 WRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIR--HRGAFESVYPGFTALCRRLWSSNNPELSE 138 (255)
T ss_pred HHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 555556666777777544211 0111222345666666666554433 34445566666776666554 33444
Q ss_pred HHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCc--
Q 039062 544 MVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSA-- 621 (871)
Q Consensus 544 ~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~-- 621 (871)
.....+..+++.+..... .....-+..+.+-.++..+...-+.. -.+.+...+..|+++.+.+..
T Consensus 139 LP~~WL~~~l~~i~~~~~-------~~~~iTRRSAGLP~~i~aiL~ae~~~------~~~ll~~~~~~Ll~ia~~~~~~~ 205 (255)
T PF10350_consen 139 LPEEWLDELLEAIESKGQ-------QKLSITRRSAGLPFLILAILSAEPSN------SRPLLHRTMKSLLEIAKSPSTQH 205 (255)
T ss_pred hHHHHHHHHHHHHhcccc-------cccccccccCcHHHHHHHHHhcCCCc------chhHHHHHHHHHHHHhcCCcccc
Confidence 555666666666654310 00000011122334455555543332 226677888888888776522
Q ss_pred ------chhhhHHHHHHHHHHH--hhhhhhhhhHhHHHHHHhhhcC
Q 039062 622 ------TVHEEAMLAIGALAYA--AGLDFAKYMPDFYKYLEMGLQN 659 (871)
Q Consensus 622 ------~~~~~a~~~l~~l~~~--~~~~~~~~l~~i~~~l~~~l~~ 659 (871)
.-+-.|+.+|..+... ++..+.+|+...+..-++.+.+
T Consensus 206 ~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s 251 (255)
T PF10350_consen 206 EDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSS 251 (255)
T ss_pred cccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 3566788888888753 4567788888887777766654
No 340
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=61.45 E-value=87 Score=26.34 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=52.9
Q ss_pred CCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhH--HHHHHHHHh----hhcCCCCCHHHHHHHHHHH
Q 039062 127 KQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHV--NKILTAVVQ----GMNASEMNNDVRLAATRAL 200 (871)
Q Consensus 127 ~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--~~i~~~l~~----~l~~~~~~~~vr~~al~~l 200 (871)
....+.+..|...+.+.++.+...||.++..++..+ ++.+ ...+ ..+...++. .....+.+..||..+...+
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~-g~~f-~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~ 110 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNC-GERF-HQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELV 110 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHc-cHHH-HHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHH
Confidence 467889999999999999999999999999999998 5444 2211 111222221 1222256889999999888
Q ss_pred HHhh
Q 039062 201 YNAL 204 (871)
Q Consensus 201 ~~~~ 204 (871)
..+.
T Consensus 111 ~~w~ 114 (115)
T cd00197 111 QLWA 114 (115)
T ss_pred HHHh
Confidence 7753
No 341
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=60.75 E-value=1.6e+02 Score=30.57 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh--HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHH
Q 039062 603 QYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM--PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRA 679 (871)
Q Consensus 603 ~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 679 (871)
.-....+..+.+-++..++.|.-.|+..+++++..+|..|..-+ ..+...+...+.+...+.|+...-.++...+..
T Consensus 41 ~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee 119 (462)
T KOG2199|consen 41 DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEE 119 (462)
T ss_pred cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999999999999999999998776433 346666666665444445555444444444333
No 342
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=59.97 E-value=3.5e+02 Score=31.94 Aligned_cols=84 Identities=6% Similarity=-0.006 Sum_probs=48.1
Q ss_pred cCcchhhhHHHHHHHHHHHhhhhhh-hhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHH
Q 039062 619 RSATVHEEAMLAIGALAYAAGLDFA-KYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLK 697 (871)
Q Consensus 619 ~~~~~~~~a~~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~ 697 (871)
....+|-..+.++..+......... +.+..++-......--+.+.++|..+...|.+++..+.......+-++++.+..
T Consensus 442 s~~~Vrik~~~~l~~~~l~nr~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~ 521 (1697)
T KOG3687|consen 442 SRGAVRIKVLDVLSFVLLINRQFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMA 521 (1697)
T ss_pred ccceEEEeeHHHHHHHHhhhhhhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHh
Confidence 3445777777777777654433221 112222111111111123558899999999999999886655556677777776
Q ss_pred HccCC
Q 039062 698 DLSSN 702 (871)
Q Consensus 698 ~l~~~ 702 (871)
.-.++
T Consensus 522 rs~s~ 526 (1697)
T KOG3687|consen 522 RSLSP 526 (1697)
T ss_pred cccCC
Confidence 63333
No 343
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=59.75 E-value=2.8e+02 Score=30.73 Aligned_cols=103 Identities=14% Similarity=0.249 Sum_probs=62.7
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHH------HhhcCCChHHHHHHHHHHHHHhhccCCC-
Q 039062 93 IKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLL------SNVHQLPAHVKQATLETLGYLCEEVSPD- 165 (871)
Q Consensus 93 i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~------~~l~~~~~~~r~~al~~l~~l~~~~~~~- 165 (871)
....++....+-++.+|..+...++.-.. ..|+.+-... =.+.+.+..+|.....++-.++... |.
T Consensus 276 cdsvfvsRy~Dv~d~IRv~c~~~L~dwi~------lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~-p~~ 348 (740)
T COG5537 276 CDSVFVSRYIDVDDVIRVLCSMSLRDWIG------LVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRI-PHT 348 (740)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHh------cchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcC-Ccc
Confidence 33333444455567777666665544332 2233221111 1234456779999999999999876 32
Q ss_pred -ccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhh
Q 039062 166 -VVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALS 205 (871)
Q Consensus 166 -~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (871)
.+ ...++.+-..++..+.. |.+. ||..+++.+..+..
T Consensus 349 d~i-r~f~eRFk~rILE~~r~-D~d~-VRi~sik~l~~lr~ 386 (740)
T COG5537 349 DAI-RRFVERFKDRILEFLRT-DSDC-VRICSIKSLCYLRI 386 (740)
T ss_pred hHH-HHHHHHHHHHHHHHHhh-ccch-hhHHHHHHHHHHHH
Confidence 12 35566676777777775 5665 99999998887643
No 344
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=59.22 E-value=1.1e+02 Score=25.96 Aligned_cols=74 Identities=14% Similarity=0.168 Sum_probs=51.4
Q ss_pred CcccchHHHHHhhhc-CCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhh
Q 039062 363 DIVPLVIPFIEENIA-KPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFL 441 (871)
Q Consensus 363 ~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~ 441 (871)
.+++.++|++...+. +.....|.+++.+++.++.... .-.+.+..++..+.... ..... ...++.++..++...
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~~~l~~l~~~i~~~~-~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSDEVLNALMESILKNW-TQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhcc-ccchh--HHHHHHHHHHHHHcc
Confidence 456788999998888 6777899999999999998642 22334566666666666 44444 456677777777544
No 345
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=59.13 E-value=3.8e+02 Score=32.09 Aligned_cols=177 Identities=14% Similarity=0.128 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhhhcchh---cccChhhHHHHHHHHHHhh-ccCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHH
Q 039062 192 VRLAATRALYNALSFAQA---NFSNDMERDYIMRVVCEAT-QSAELKIRQAAFECLVSISSTYYEKLAPYMQ-DIYSITA 266 (871)
Q Consensus 192 vr~~al~~l~~~~~~~~~---~~~~~~~~~~i~~~l~~~l-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~ 266 (871)
--..++.++.+++.+.++ .|..+...-..++.++..+ ...++++++-|++.+..+..+ .+.+..... ..+..++
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHHH
Confidence 345688899998887664 3333322222344444444 345778888888888765543 222222222 1222333
Q ss_pred HHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHh
Q 039062 267 KAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIA 346 (871)
Q Consensus 267 ~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r 346 (871)
..+ ...+..|..+++.+..+.... ++..+ ...+..+..+..+++ .... -..|
T Consensus 1820 ~lL-HS~PS~R~~vL~vLYAL~S~~-~i~ke--------------A~~hg~l~yil~~~c----~~~~--------~QqR 1871 (2235)
T KOG1789|consen 1820 TLL-HSQPSMRARVLDVLYALSSNG-QIGKE--------------ALEHGGLMYILSILC----LTNS--------DQQR 1871 (2235)
T ss_pred HHH-hcChHHHHHHHHHHHHHhcCc-HHHHH--------------HHhcCchhhhhHHHh----ccCc--------HHHH
Confidence 333 456788889999998887642 11111 111222223333332 1221 1578
Q ss_pred HHHHHHHHHHHHH--cCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcC
Q 039062 347 MAGGTCLGLVART--VGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEG 397 (871)
Q Consensus 347 ~~a~~~l~~l~~~--~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 397 (871)
.++++.+..+..- .|..+--.++.|+-+.+.+.--..-+++..++....++
T Consensus 1872 AqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~En 1924 (2235)
T KOG1789|consen 1872 AQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSEN 1924 (2235)
T ss_pred HHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCC
Confidence 8888888877542 36555445555554443331111127778888777765
No 346
>PF14961 BROMI: Broad-minded protein
Probab=58.67 E-value=95 Score=37.38 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=58.7
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhH
Q 039062 177 TAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLA 255 (871)
Q Consensus 177 ~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~ 255 (871)
+.+.+.+.. +...+||.+|++.|... .+.+....+.|+.+...+...+.|+|+.+...+++......+..|-.+.
T Consensus 164 q~i~d~ld~-~~P~evR~eAlq~Lc~~---p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~t 238 (1296)
T PF14961_consen 164 QLIADKLDP-GQPKEVRLEALQILCSA---PPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNMT 238 (1296)
T ss_pred HHHHHhcCC-CCchHHHHHHHHHHhcC---ChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhhh
Confidence 566677764 67889999999999873 3333334457889999999999999999999999999998877655443
No 347
>PF14961 BROMI: Broad-minded protein
Probab=58.61 E-value=1.8e+02 Score=35.25 Aligned_cols=135 Identities=11% Similarity=0.103 Sum_probs=82.1
Q ss_pred hHHHHHHHHhhcCCCh-HHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcch
Q 039062 130 PELIVSLLSNVHQLPA-HVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQ 208 (871)
Q Consensus 130 ~~ll~~L~~~l~~~~~-~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 208 (871)
++=++.+.+.+...++ ++|..|++.|-...- .+.++.+.++.+...+..+|. |+++.+...+++.....+...+
T Consensus 160 qe~lq~i~d~ld~~~P~evR~eAlq~Lc~~p~---SDVls~E~W~~L~~~L~~~Ls--DpD~~is~~~L~f~Ak~fssSp 234 (1296)
T PF14961_consen 160 QEQLQLIADKLDPGQPKEVRLEALQILCSAPP---SDVLSCESWSVLRENLTDALS--DPDPEISDASLRFHAKMFSSSP 234 (1296)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh---hhccccccHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhccCCc
Confidence 4445666666665554 588888877754322 456667889999999999999 9999999999999999876654
Q ss_pred hcccChhhHHHHHHHHHHh--------------hc--cCcHHHHHHHHHHHHHHHHHhHHhh----HHhHHHHHHHHHHH
Q 039062 209 ANFSNDMERDYIMRVVCEA--------------TQ--SAELKIRQAAFECLVSISSTYYEKL----APYMQDIYSITAKA 268 (871)
Q Consensus 209 ~~~~~~~~~~~i~~~l~~~--------------l~--~~~~~~~~~a~~~l~~l~~~~~~~~----~~~~~~l~~~~~~~ 268 (871)
.....+.+ ..+++.+-.. +. .++..---..+..|..+-+..|.+| .++++++++-.+..
T Consensus 235 l~~trEiY-tsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTLsL 313 (1296)
T PF14961_consen 235 LNMTREIY-TSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTLSL 313 (1296)
T ss_pred hhhhHHHH-HHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHHHH
Confidence 43322211 2223222111 11 1122222344555665555555543 35566777766666
Q ss_pred hh
Q 039062 269 VR 270 (871)
Q Consensus 269 ~~ 270 (871)
+.
T Consensus 314 Ls 315 (1296)
T PF14961_consen 314 LS 315 (1296)
T ss_pred hc
Confidence 54
No 348
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=57.71 E-value=1.8e+02 Score=27.77 Aligned_cols=150 Identities=19% Similarity=0.134 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHH
Q 039062 17 GTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTC 96 (871)
Q Consensus 17 ~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 96 (871)
+..|+-|-+...+.... ..... ++.-+.. +..-+.|.+|+.++...... .+++ ....
T Consensus 33 p~lr~lak~~~~~~~~~--~~~~~-l~~~L~~-~~~~E~~~la~~il~~~~~~---------------~~~~----~~~~ 89 (213)
T PF08713_consen 33 PDLRKLAKDIYKELKLS--EELYE-LADELWE-SGYREERYLALLILDKRRKK---------------LTEE----DLEL 89 (213)
T ss_dssp HHHHHHHHHHHHHHCTS--HHHHH-HHHHHHC-SSCHHHHHHHHHHHHHCGGG-----------------HH----HHHH
T ss_pred HHHHHHHHHHHhhcccc--hHHHH-HHHHHcC-CchHHHHHHHHHHhHHHhhh---------------hhHH----HHHH
Confidence 45666666666665554 33433 3333444 34588899999888554321 1211 2223
Q ss_pred HHHhhcCC-chHHHHHH-HHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHH
Q 039062 97 LLNTLTST-VADARSTS-SQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNK 174 (871)
Q Consensus 97 ll~~l~~~-~~~vr~~~-a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 174 (871)
+-..+..- +..+.-.+ ..+++.+.... +++.+.+.+.+.+++.-.|..|+.++-.... ....+.
T Consensus 90 ~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~--------~~~~~~ 155 (213)
T PF08713_consen 90 LEKWLPDIDNWATCDSLCSKLLGPLLKKH------PEALELLEKWAKSDNEWVRRAAIVMLLRYIR--------KEDFDE 155 (213)
T ss_dssp HHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGG--------GCHHHH
T ss_pred HHHHhccCCcchhhhHHHHHHHHHHHHhh------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH--------hcCHHH
Confidence 33344433 34555554 55566664432 7788999999999999888888777633222 245567
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHhhh
Q 039062 175 ILTAVVQGMNASEMNNDVRLAATRALYNALS 205 (871)
Q Consensus 175 i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (871)
++..+...+. |++..||.+..-+|..+..
T Consensus 156 ~l~~~~~~~~--d~~~~vq~ai~w~L~~~~~ 184 (213)
T PF08713_consen 156 LLEIIEALLK--DEEYYVQKAIGWALREIGK 184 (213)
T ss_dssp HHHHHHHCTT--GS-HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcC--CchHHHHHHHHHHHHHHHH
Confidence 7777777777 8899999999988888643
No 349
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=56.90 E-value=18 Score=23.20 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=21.9
Q ss_pred HHHHHHHhccC-ChHHHHHHHHHHHHHH
Q 039062 459 IITVLLQSMKD-TPNVAEKACGALYFLA 485 (871)
Q Consensus 459 il~~l~~~l~d-~~~v~~~a~~~l~~l~ 485 (871)
.++.|++.+.. +++++..++++|.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 56777777765 7899999999999874
No 350
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=56.34 E-value=1.1e+02 Score=30.02 Aligned_cols=140 Identities=11% Similarity=0.092 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhhccCCCc---cchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHH
Q 039062 149 QATLETLGYLCEEVSPDV---VEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVC 225 (871)
Q Consensus 149 ~~al~~l~~l~~~~~~~~---~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~ 225 (871)
-.|+..|+.++.+ |+. |-..+++-.+-.+++......+-..+|.+++..++.++...+.....--...++++...
T Consensus 68 cnaLaLlQ~vAsh--petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 68 CNALALLQCVASH--PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHHH---TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHcC--hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 4566666666664 331 10233333322233332211234679999999999988643221100001134677888
Q ss_pred HhhccCcHHHHHHHHHHHHHHHHHh---------HHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHH
Q 039062 226 EATQSAELKIRQAAFECLVSISSTY---------YEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDE 290 (871)
Q Consensus 226 ~~l~~~~~~~~~~a~~~l~~l~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~ 290 (871)
..+..++.-.+..|.-.+..++... ++.+......+-..+.....++++..-+..+.+...++++
T Consensus 146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 8887777777888888887777541 2222222122222223334566666766777777777664
No 351
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=56.01 E-value=26 Score=33.45 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHH
Q 039062 792 HILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAI 865 (871)
Q Consensus 792 ~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 865 (871)
.+.+++....++ ...+.+|..+++.||.+++.-..++..|+-..+.|+ ++-....++...-+..|.+.++.|
T Consensus 124 ylYpfL~Tt~~~-r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP-lCLrime~GSelSKtvA~fIlqKI 195 (293)
T KOG3036|consen 124 YLYPFLNTTSKS-RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP-LCLRIMESGSELSKTVATFILQKI 195 (293)
T ss_pred hhHHhhhccccC-CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH-HHHHHHhcccHHHHHHHHHHHHHH
Confidence 356666655554 357888999999999999998888888877765555 555555567888888888887765
No 352
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=55.70 E-value=1.5e+02 Score=26.64 Aligned_cols=121 Identities=21% Similarity=0.269 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCH
Q 039062 111 TSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNN 190 (871)
Q Consensus 111 ~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 190 (871)
...+++.++++... ..-++.++.+.+.+...+......-.++|+.++... |-.+ .++...+- .++..+. .-+.
T Consensus 37 LG~~IL~~~fk~h~--~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~-p~~v-le~~~~l~-~~ld~l~--~lp~ 109 (158)
T PF14676_consen 37 LGIQILLELFKVHE--MIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKA-PLTV-LECSSKLK-ELLDYLS--FLPG 109 (158)
T ss_dssp HHHHHHHHHHHH-G--GGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH--HHHH-S-S-HHHH-GGGGGTT--TS-H
T ss_pred HHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHC-hHHH-HHHHHHHH-HHHHHHH--hCCH
Confidence 34445555554431 123455555555543322221122356777776665 3222 22222221 2333333 3445
Q ss_pred HHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 039062 191 DVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLV 244 (871)
Q Consensus 191 ~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~ 244 (871)
++...-++++.-++... ...++.++-.+-+.+-+.+.+.|..|+..+.
T Consensus 110 ~~a~~ll~Al~PLi~~s------~~lrd~lilvLRKamf~r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 110 DVAIGLLRALLPLIKFS------PSLRDSLILVLRKAMFSRELDARQMAVNGFL 157 (158)
T ss_dssp HHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHccccHHHHHHHHHHhc
Confidence 55555555555554432 2345777777777777778888888877653
No 353
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=55.53 E-value=4.1e+02 Score=31.35 Aligned_cols=32 Identities=6% Similarity=-0.094 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Q 039062 218 DYIMRVVCEATQSAELKIRQAAFECLVSISST 249 (871)
Q Consensus 218 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 249 (871)
+.+++.+..++-+++++.|.-|...+..+-..
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~ 150 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRP 150 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCC
Confidence 45677777888888999999999999987654
No 354
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.52 E-value=1.4e+02 Score=29.97 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=62.7
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHh
Q 039062 178 AVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPY 257 (871)
Q Consensus 178 ~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 257 (871)
.+...+. +.++.||++|+..+..+.......+... ....++.+.+++.+.++ ...|+.++..+..... .-...
T Consensus 7 elv~ll~--~~sP~v~~~AV~~l~~lt~~~~~~~~~~--~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~l 79 (353)
T KOG2973|consen 7 ELVELLH--SLSPPVRKAAVEHLLGLTGRGLQSLSKY--SEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKL 79 (353)
T ss_pred HHHHHhc--cCChHHHHHHHHHHhhccccchhhhccc--hhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHH
Confidence 3456666 7899999999998888665422223221 14567888888876665 5566667776665421 11222
Q ss_pred HHHHHHHHHHHhhCCChhHHHHHHHHHHHHHH
Q 039062 258 MQDIYSITAKAVREDEEPVALQAIEFWSSICD 289 (871)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 289 (871)
+..++.+++..+.++........+..+..+.+
T Consensus 80 l~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 80 LQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 33466666666666655554444444545444
No 355
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=55.08 E-value=5.1e+02 Score=32.28 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC
Q 039062 406 IVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD 469 (871)
Q Consensus 406 ~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d 469 (871)
+++.++-.+...+ .+...++|.++-.+++++...++ +.|+..+++.+-..+..
T Consensus 561 ~L~~illkic~~l-~~~s~e~rd~srktl~~i~k~Lg----------~~yl~~Vi~el~~Tl~r 613 (1364)
T KOG1823|consen 561 NLPSILLDICYLL-RSRSAELRDASRKTLAKIIKILG----------PKYLYFVIKELQTTLKR 613 (1364)
T ss_pred cCcHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHHH
Confidence 4778887788888 88899999999999999998885 56778888888777764
No 356
>PHA01351 putative minor structural protein
Probab=54.06 E-value=3.6e+02 Score=30.30 Aligned_cols=27 Identities=7% Similarity=0.295 Sum_probs=12.3
Q ss_pred HHHHHhhhcccccHHHHHHHHHHHccC
Q 039062 675 DICRALEEKILPYCDGIMTQLLKDLSS 701 (871)
Q Consensus 675 ~l~~~~~~~~~~~~~~i~~~l~~~l~~ 701 (871)
...+..+.++..+...++..++..+.+
T Consensus 126 ~~~~~i~n~~~q~~~~~isd~~~~~~~ 152 (1070)
T PHA01351 126 SFFQNVANDFAQIISGVISDFLNFFGA 152 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444444555554444443
No 357
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=53.65 E-value=29 Score=23.41 Aligned_cols=36 Identities=25% Similarity=0.187 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhh
Q 039062 88 NVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIE 123 (871)
Q Consensus 88 ~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~ 123 (871)
...+++|+.+++.|..+++..|.....+|+.+.+..
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCC
Confidence 356899999999999988888888888888887643
No 358
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=52.97 E-value=1.8e+02 Score=31.59 Aligned_cols=73 Identities=16% Similarity=0.068 Sum_probs=53.7
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHH-HHHHHhhhcCCCCCHHHHHHHHHHHHHhhh
Q 039062 130 PELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKI-LTAVVQGMNASEMNNDVRLAATRALYNALS 205 (871)
Q Consensus 130 ~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i-~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (871)
..++..|...+.+.+...|..+..++..++=.+ .+...-+.+..+ +..++...+ |+.+.|+..+++.+.++..
T Consensus 472 ~~iIdvl~~~v~sKDdaLqans~wvlrHlmync-q~~ekf~~Lakig~~kvl~~~N--Dpc~~vq~q~lQilrNftc 545 (743)
T COG5369 472 KSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC-QKNEKFKFLAKIGVEKVLSYTN--DPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC-cchhhhhhHHhcCHHHHHHHhc--CcccccHHHHHHHHHhccc
Confidence 457888888888888888888899998877665 221101223333 556777877 9999999999999999865
No 359
>PLN03205 ATR interacting protein; Provisional
Probab=50.37 E-value=1.5e+02 Score=30.55 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCC--ccc---hhhHHHHHHHHHhhhc
Q 039062 110 STSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPD--VVE---QDHVNKILTAVVQGMN 184 (871)
Q Consensus 110 ~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~--~~~---~~~~~~i~~~l~~~l~ 184 (871)
.+..++.+.+.+..++.-....++..|+.+..-++..+...++++|..+.+++-.+ .|. ...+..++....+...
T Consensus 302 ekVshlYs~~tKiS~G~V~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv 381 (652)
T PLN03205 302 EKVYHLYSAVTKISYGFVNLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIAS 381 (652)
T ss_pred HHHHHHHHHHHHhhCCeeeHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHh
Confidence 45566666666665443466889999999988888888889999998887775222 231 2356666666666544
Q ss_pred CCCCCHHHHHHHHHHHHHhhhcchhcccChh-h-HHHHHHHHHHhhcc-CcHHHHHHHHHHHHHHH
Q 039062 185 ASEMNNDVRLAATRALYNALSFAQANFSNDM-E-RDYIMRVVCEATQS-AELKIRQAAFECLVSIS 247 (871)
Q Consensus 185 ~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~-~~~i~~~l~~~l~~-~~~~~~~~a~~~l~~l~ 247 (871)
. .+...||..|+.++.-++..... +...+ + ...+++.+.++++. .-..+++.++..+--++
T Consensus 382 ~-~TEE~VrLEAvSIMnVIlmssna-~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLL 445 (652)
T PLN03205 382 I-RTEEDVKLEALSIMNIIVMSTDA-YTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLL 445 (652)
T ss_pred c-cchhheeeehhhhhHHhhhccch-hHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 3 56778999998887766532211 11111 0 02355666666542 23456777777666444
No 360
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=49.52 E-value=12 Score=29.67 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcc
Q 039062 624 HEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKI 684 (871)
Q Consensus 624 ~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~ 684 (871)
|..+...|++++...+-.+.+++|.++..|.+...+ ...++..+=.+++++-+.-.+..
T Consensus 6 rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~--~~~I~~tvk~tl~eFkrtH~D~W 64 (90)
T PF11919_consen 6 RHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND--PQPIRTTVKKTLSEFKRTHQDTW 64 (90)
T ss_dssp HHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS---SSHHHHTHHHHHHHHHHTSTTH
T ss_pred HHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC--CchHHHHHHHHHHHHHHhCcccH
Confidence 567888999999999988989999999998887764 34678888888888877655433
No 361
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=49.26 E-value=2.1e+02 Score=29.72 Aligned_cols=75 Identities=8% Similarity=-0.048 Sum_probs=57.7
Q ss_pred cchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH--HHHHHHHHHHccC-CCcHHHHHHHHHHHHHHhhhhc
Q 039062 366 PLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV--NVALSFMLSALTK-DPNNHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 366 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l--~~i~~~l~~~l~~-d~~~~vr~~a~~~l~~~~~~~~ 442 (871)
...+.+|.+++++.++.+-.-|+.+++++..+|+ +.+...+ ..+...+...+ . ..++.|+.....++.+.++.+.
T Consensus 44 kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg-~~~r~EVsSr~F~~el~al~-~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 44 KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCG-KRFRLEVSSRDFTTELRALI-ESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcc-hHHHHHHhhhhHHHHHHHHH-hhcccHHHHHHHHHHHHHHHHHhc
Confidence 3567778889999999999999999999999997 5554433 34555666666 5 6788998888888888887665
No 362
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=48.29 E-value=2.9e+02 Score=27.41 Aligned_cols=122 Identities=15% Similarity=0.132 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHccc-Cc---chhhhH-HH-HHHHHHHHhhhhhhhhhHhHHHH
Q 039062 579 LLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACR-SA---TVHEEA-ML-AIGALAYAAGLDFAKYMPDFYKY 652 (871)
Q Consensus 579 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~---~~~~~a-~~-~l~~l~~~~~~~~~~~l~~i~~~ 652 (871)
.+...+..++..+-... .+.+...-...+..++..+... .. -.|+.| +. ++..++..-+..-.+.++..+..
T Consensus 116 ~~~~~f~~lc~~l~~~~--~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~ 193 (255)
T PF10350_consen 116 SVYPGFTALCRRLWSSN--NPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKS 193 (255)
T ss_pred HHHHHHHHHHHHHhcCC--CchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 35556666666665321 1114444455666777777665 22 345543 33 34445544433222667778888
Q ss_pred HHhhhcCCcc-------hhHHHHHHHHHHHHHHHh--hhcccccHHHHHHHHHHHccCC
Q 039062 653 LEMGLQNFEE-------YQVCAVTVGVVGDICRAL--EEKILPYCDGIMTQLLKDLSSN 702 (871)
Q Consensus 653 l~~~l~~~~~-------~~v~~~a~~~l~~l~~~~--~~~~~~~~~~i~~~l~~~l~~~ 702 (871)
|++..+.+.. ..-+..|+.+|..+.+.. ++.+.+|+.+.+..-++.+.++
T Consensus 194 Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s~ 252 (255)
T PF10350_consen 194 LLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSSP 252 (255)
T ss_pred HHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 8877765322 135668899998887754 4778889988888888888776
No 363
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=48.03 E-value=2.4e+02 Score=26.46 Aligned_cols=31 Identities=10% Similarity=-0.037 Sum_probs=20.5
Q ss_pred hHhHHHHHHhhhcCCcchhHHHHHHHHHHHHH
Q 039062 646 MPDFYKYLEMGLQNFEEYQVCAVTVGVVGDIC 677 (871)
Q Consensus 646 l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~ 677 (871)
+..++..+++..-..-| .+|..|..++..+.
T Consensus 5 ~~~~~~~llrqa~EKiD-rvR~~A~~~l~~ll 35 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKID-RVREVAGKCLQRLL 35 (193)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 44555555544433334 79999999999888
No 364
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=47.42 E-value=4.6e+02 Score=29.49 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=45.1
Q ss_pred cHhHHHHHHHHHHHHHc-C----CCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCC
Q 039062 344 NIAMAGGTCLGLVARTV-G----DDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPS 399 (871)
Q Consensus 344 ~~r~~a~~~l~~l~~~~-~----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~ 399 (871)
.++-+..+.++.+++.+ + +.+.|.+.......+.+.+|-.++-|+.+++.+++.+.
T Consensus 495 ~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 495 HVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred cchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 37777888998888865 3 23566777777778889999999999999999999864
No 365
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=46.99 E-value=1.1e+02 Score=28.71 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=45.4
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhc
Q 039062 370 PFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 370 ~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (871)
+.+.....|++.-.|.+++.++...... ..+...++..+-..+ .|++..||.+..|+|..++...+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~-~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLL-HDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhhCH
Confidence 6677777776544455544444333322 123566778778888 89999999999999999887654
No 366
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=46.97 E-value=90 Score=27.47 Aligned_cols=47 Identities=26% Similarity=0.283 Sum_probs=30.9
Q ss_pred ccHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhC
Q 039062 2 AMEVTQVLLNAQS-IDGTVRKHAEESLKQFQEQNLPSFLLSLSGELAN 48 (871)
Q Consensus 2 ~~~l~~~l~~~~s-~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~ 48 (871)
++++.+++..+++ +|+++++.|-+.|-.|+......|-..|.+++.+
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~d~L~~Lldd 62 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPYKDNLENLLDD 62 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHHHHHHHHcCc
Confidence 4567777777544 7888888888888877764334455555555543
No 367
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=46.14 E-value=1.7e+02 Score=27.68 Aligned_cols=97 Identities=12% Similarity=0.086 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhccCCC---ccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHH
Q 039062 149 QATLETLGYLCEEVSPD---VVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVC 225 (871)
Q Consensus 149 ~~al~~l~~l~~~~~~~---~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~ 225 (871)
-.|+..++-++.+ |+ .|-+.+++-++=.++....++.+-..+|..++..++.++...+......-...++++.+.
T Consensus 118 cnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 118 CNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 4567777666654 32 222344444443444455544566789999999999988654322111112245777777
Q ss_pred HhhccCcHHHHHHHHHHHHHHH
Q 039062 226 EATQSAELKIRQAAFECLVSIS 247 (871)
Q Consensus 226 ~~l~~~~~~~~~~a~~~l~~l~ 247 (871)
+.+..+++--+.-+.-.+..++
T Consensus 196 rIme~gSElSktvaifI~qkil 217 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKIL 217 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHh
Confidence 7776655555555555555544
No 368
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=45.83 E-value=33 Score=34.10 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=43.6
Q ss_pred HHHHHHHHhhcCCChH-HHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhc
Q 039062 131 ELIVSLLSNVHQLPAH-VKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSF 206 (871)
Q Consensus 131 ~ll~~L~~~l~~~~~~-~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 206 (871)
+++..|+..+++.+++ ...-|+.-++.+++.. |+..+.-..-+.-+.++..++ +++++||..|++++..++.+
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~-PE~~~vl~Kyg~k~~im~L~n--h~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS-PEINAVLSKYGVKEIIMNLIN--HDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC-chHHHHHHHhhhHHHHHHHhc--CCCchhhHHHHHHHHHHHhh
Confidence 3555666666665444 2233455555555555 543311111122345677777 89999999999999987753
No 369
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=45.82 E-value=3.1e+02 Score=31.94 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccC--hHHhHHHHHHHHHHHH
Q 039062 665 VCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN--FEKYLMYAMPMLQSAA 742 (871)
Q Consensus 665 v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~--~~~~~~~i~~~l~~~l 742 (871)
....|+.++..+..++.+++..+...++..+..++++. ..+++.-+..++..++...++. +..-.+.++..+.+..
T Consensus 72 ~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~--~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~ 149 (819)
T KOG1877|consen 72 SVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESN--NDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLC 149 (819)
T ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHh
Confidence 34568888999999999999888899999999999887 6778888888888877654432 2222333444444333
Q ss_pred hhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhc
Q 039062 743 DLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGF 777 (871)
Q Consensus 743 ~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~ 777 (871)
... +++ +....+|.+-++++.+++.-.
T Consensus 150 he~-----~~~---~~~~~lr~agl~gLsa~v~~t 176 (819)
T KOG1877|consen 150 HER-----GDD---DMKDCLRAAGLQGLSAVVWLT 176 (819)
T ss_pred hcc-----cch---hhhhhccHhhhhhHHHHHHHH
Confidence 332 122 245566666666666655443
No 370
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=45.55 E-value=3.2e+02 Score=27.18 Aligned_cols=191 Identities=12% Similarity=0.096 Sum_probs=113.8
Q ss_pred chHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHHHHHhhhccCCChhhH
Q 039062 499 PFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTD--------ETAPMVLQLVPVIMMELHKTLEGQKLSSDER 570 (871)
Q Consensus 499 ~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ 570 (871)
.-++.+-+.+++.+.++. .-+.++..+..++..... .+.-.+-..+|.++..+++... . . .+.
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~-----t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~--i-~-~~~ 130 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSS-----TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNP--I-Q-PDQ 130 (262)
T ss_pred CCchhHHHHHhCccCCCC-----cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhccccc--c-c-ccH
Confidence 345666777777777653 345677777777766431 2333445667777777654310 0 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhh-hhhHhH
Q 039062 571 EKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFA-KYMPDF 649 (871)
Q Consensus 571 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~l~~i 649 (871)
....+...+..+++.-+.. .+. .++..+..+.. +..-..+..++..+.+.+. ++-..+
T Consensus 131 -----~~~~~A~~La~~a~~~~~~---------~La----~il~~ya~~~f---r~~~dfl~~v~~~l~~~f~P~~~~~~ 189 (262)
T PF14225_consen 131 -----ECIEIAEALAQVAEAQGLP---------NLA----RILSSYAKGRF---RDKDDFLSQVVSYLREAFFPDHEFQI 189 (262)
T ss_pred -----HHHHHHHHHHHHHHhCCCc---------cHH----HHHHHHHhcCC---CCHHHHHHHHHHHHHHHhCchhHHHH
Confidence 1122455566666443322 122 22222322222 3344456666666666664 455678
Q ss_pred HHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccC
Q 039062 650 YKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN 726 (871)
Q Consensus 650 ~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~ 726 (871)
+-.+...+.+... -++..++.+|..+.+...-. .|...+++..+++.++.+ .-..|+..+..+....|+.
T Consensus 190 l~~Ll~lL~n~~~-w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~-----~~~eAL~VLd~~v~~s~s~ 259 (262)
T PF14225_consen 190 LTFLLGLLENGPP-WLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTD-----LWMEALEVLDEIVTRSGSP 259 (262)
T ss_pred HHHHHHHHhCCcH-HHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCc-----cHHHHHHHHHHHHhhcccc
Confidence 8888888876644 68888999999888877633 456788999999999876 2356777777777766654
No 371
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=43.86 E-value=2.4e+02 Score=25.34 Aligned_cols=97 Identities=13% Similarity=0.140 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHHhHHhhHHhHHH-HHHHHHH
Q 039062 191 DVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQS--AELKIRQAAFECLVSISSTYYEKLAPYMQD-IYSITAK 267 (871)
Q Consensus 191 ~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-l~~~~~~ 267 (871)
++-..++.++..+++..--.+ +..-+.++.-+...++. .|..+...++..|-.++...+......-++ -++-++.
T Consensus 32 ~~La~~L~af~eLMeHg~vsW--d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~ 109 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSW--DTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIR 109 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCch--hhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHH
Confidence 455667777777665421122 22224555555555432 268889999999999987654432222222 2555556
Q ss_pred HhhCCChhHHHHHHHHHHHHHH
Q 039062 268 AVREDEEPVALQAIEFWSSICD 289 (871)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~l~~ 289 (871)
.++..+.+++..|+..+..+..
T Consensus 110 hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 110 HLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHcCCHHHHHHHHHHHHHHHh
Confidence 8888899999999888777654
No 372
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.51 E-value=1.2e+02 Score=32.96 Aligned_cols=76 Identities=11% Similarity=0.144 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh--HhHHHHHHhhhcCC-cchhHHHHHHHHHHHHHHHhhh
Q 039062 607 QIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM--PDFYKYLEMGLQNF-EEYQVCAVTVGVVGDICRALEE 682 (871)
Q Consensus 607 ~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~~ 682 (871)
..+..|.+-++..++.+.-.|+.+|..+++.+|..|...+ ..+++-++...++. -+.+||..++.+|..-...++.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 6677777778877778888999999999999999887544 45888888888776 6678999999999887777653
No 373
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=43.31 E-value=28 Score=20.65 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHhhc
Q 039062 381 WRQREAATYAFGSILE 396 (871)
Q Consensus 381 ~~~r~~a~~~l~~l~~ 396 (871)
|.+|+.+..+|+.+..
T Consensus 1 ~~vR~~aa~aLg~~~~ 16 (30)
T smart00567 1 PLVRHEAAFALGQLGD 16 (30)
T ss_pred CHHHHHHHHHHHHcCC
Confidence 7789999999998743
No 374
>PLN03205 ATR interacting protein; Provisional
Probab=42.01 E-value=4.2e+02 Score=27.58 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=67.2
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcC---------CCCchHHHHHHHHhhcC-CChHHHHHHHHHHHHHhh
Q 039062 91 TQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELP---------QKQWPELIVSLLSNVHQ-LPAHVKQATLETLGYLCE 160 (871)
Q Consensus 91 ~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~---------~~~~~~ll~~L~~~l~~-~~~~~r~~al~~l~~l~~ 160 (871)
+.+...|+.+-.-++..+-..+-.++-.+..+..+ ..+|-.++..+.+.... ..+.+|..|+.+...|.-
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 34555566655545544433333333333332221 14788899998887654 456688888888887766
Q ss_pred ccCCCccchhh--HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhh
Q 039062 161 EVSPDVVEQDH--VNKILTAVVQGMNASEMNNDVRLAATRALYNALS 205 (871)
Q Consensus 161 ~~~~~~~~~~~--~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (871)
.. ......+. ...++..+.+.++. +....|++.|+..+.-++.
T Consensus 402 ss-na~~eREkFG~~~VfESiaQLLkk-EaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 402 ST-DAYTARESFVSKEVFESISLLLRK-EGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred cc-chhHHHHHhcchHHHHHHHHHHHH-hccchhhHHHHHHHHHHHc
Confidence 54 21111111 23456667777765 6777899999998877664
No 375
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=41.91 E-value=2.4e+02 Score=24.80 Aligned_cols=78 Identities=10% Similarity=0.077 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHcc-cCcchhhhHHHHHHHHHHHhhhhhhhhh--HhHHHH-HHhhhcCCc--chhHHHHHHHHHHHHHH
Q 039062 605 ADQIMGLFLRVFAC-RSATVHEEAMLAIGALAYAAGLDFAKYM--PDFYKY-LEMGLQNFE--EYQVCAVTVGVVGDICR 678 (871)
Q Consensus 605 ~~~i~~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~-l~~~l~~~~--~~~v~~~a~~~l~~l~~ 678 (871)
....+..+..-++. .++.+.-.|+..+..+++.+|..|...+ ..++.. +.+.+.... ...|+...+.++.....
T Consensus 36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 34566677776664 4666778899999999999998886544 245654 555554322 34788888888888887
Q ss_pred Hhhh
Q 039062 679 ALEE 682 (871)
Q Consensus 679 ~~~~ 682 (871)
.++.
T Consensus 116 ~f~~ 119 (141)
T cd03565 116 AFRG 119 (141)
T ss_pred HhCC
Confidence 7763
No 376
>COG5543 Uncharacterized conserved protein [Function unknown]
Probab=41.81 E-value=3.6e+02 Score=31.57 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHh--HHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhh
Q 039062 235 IRQAAFECLVSISSTY--YEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFY 312 (871)
Q Consensus 235 ~~~~a~~~l~~l~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (871)
-+..|+.++..+.... ......++.+.+.+.+.....+--.+|--.+..++.+.....+..++. .-|...-...+
T Consensus 788 pqVha~N~l~~If~e~~Lss~~~~~ieea~~La~~~f~~~lWaiRNcsImLFT~LvnRaFg~~~~~---~vg~~~~~s~k 864 (1400)
T COG5543 788 PQVHALNILSRIFEEGCLSSKLPLQIEEAFGLAFKCFRSNLWAIRNCSIMLFTNLVNRAFGRGPEG---IVGMAHAGSRK 864 (1400)
T ss_pred hhhHHHHHHHHHHhccccccccHHHHHHHHHHHHhccccceeeecccchHHHHHHHHHHhCCCCCc---ccccchhhHHH
Confidence 3567888888777542 334455566677777767666656677667777777766433211110 00100000111
Q ss_pred hHHhhhhhhHHHHHH-------HHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHH
Q 039062 313 FIKQALPALVPLLLE-------ILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQRE 385 (871)
Q Consensus 313 ~~~~~~~~l~~~l~~-------~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~ 385 (871)
.+-.-++.+-..+++ .+... +.+...+ ..+ .....++-++...-|-.-+...-+.+.+...+++|++|.
T Consensus 865 lff~k~s~lrd~ll~~L~~sIa~lsg~-~r~s~g~--e~I-~~v~~~l~rl~p~gg~tGLk~fn~~~~kc~~~~~~K~r~ 940 (1400)
T COG5543 865 LFFKKLSLLRDKLLDVLALSIAHLSGR-MRESNGE--ESI-FLVTEALWRLSPRGGVTGLKSFNICTKKCWKMPNWKARP 940 (1400)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhcC-cCccccc--chH-HHHHHHHHHhCccCCcccccccccHHHHHhcCcccccch
Confidence 111112222222222 22211 1111111 011 112344555544444334455566678888999999999
Q ss_pred HHHHHHHHhhcCC
Q 039062 386 AATYAFGSILEGP 398 (871)
Q Consensus 386 ~a~~~l~~l~~~~ 398 (871)
-|-..+..+.+..
T Consensus 941 ~as~vl~~ll~~~ 953 (1400)
T COG5543 941 RASMVLNPLLSEG 953 (1400)
T ss_pred hHHhhhhhhhccc
Confidence 9999888888763
No 377
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=40.07 E-value=29 Score=20.10 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhh
Q 039062 426 VKDTTAWTLGRIFE 439 (871)
Q Consensus 426 vr~~a~~~l~~~~~ 439 (871)
||..+.++||++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 68899999988754
No 378
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=39.95 E-value=39 Score=32.95 Aligned_cols=71 Identities=20% Similarity=0.160 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHH
Q 039062 793 ILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAI 865 (871)
Q Consensus 793 i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 865 (871)
++|++....+. ...+.+|.++++.||.+++.-..+...|+-+.++|+-.|.-+. .++.--+..|.+.+.+|
T Consensus 96 LyPfL~tt~k~-r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me-~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 96 LYPFLNTTSKT-RPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIME-FGSELSKTVATFILQKI 166 (262)
T ss_dssp GHHHHH----S-HHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHH-HS-HHHHHHHHHHHHHH
T ss_pred ehhhhhccccc-cccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 44555443332 2356789999999999999877778888888777777777776 56888888898888765
No 379
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=39.78 E-value=2.3e+02 Score=31.15 Aligned_cols=74 Identities=11% Similarity=0.056 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhc------------ccccccccchHHHHHHHHHHHc-CCChhhHHHH
Q 039062 792 HILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLG------------SNAGSLIQQSLTSKDFLNECLS-SKDHMIKESA 858 (871)
Q Consensus 792 ~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~------------~~~~~~l~~~~~v~~~l~~~~~-~~~~~~~~~~ 858 (871)
.+++.++..+. ++.+.++..+|..+|++|++... +.+...+-..+.|..++.-+.. ..+..+-...
T Consensus 62 ~LI~~Li~~L~-p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v 140 (475)
T PF04499_consen 62 NLIPRLIDLLS-PSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGV 140 (475)
T ss_pred CHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHH
Confidence 57777777776 56788899999999999988754 2344556666677788888774 2334444444
Q ss_pred HHHHHHHH
Q 039062 859 EWARLAIN 866 (871)
Q Consensus 859 ~~~~~~~~ 866 (871)
...+..|+
T Consensus 141 ~IlieLIR 148 (475)
T PF04499_consen 141 SILIELIR 148 (475)
T ss_pred HHHHHHHH
Confidence 34444443
No 380
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=39.51 E-value=2.8e+02 Score=24.90 Aligned_cols=88 Identities=15% Similarity=0.284 Sum_probs=57.5
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHHhhh-----cCCCCchHHHHHHHHhhcCCC-----------hH-----HH-HHHHHH
Q 039062 97 LLNTLTSTVADARSTSSQVIAKVAGIE-----LPQKQWPELIVSLLSNVHQLP-----------AH-----VK-QATLET 154 (871)
Q Consensus 97 ll~~l~~~~~~vr~~~a~~l~~i~~~~-----~~~~~~~~ll~~L~~~l~~~~-----------~~-----~r-~~al~~ 154 (871)
++..|.+..-.-|+.+..-+..+.... .+...|..++..|+..+..+. .. .| ..+..+
T Consensus 9 ~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~~ 88 (155)
T PF11640_consen 9 ILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCASA 88 (155)
T ss_pred HHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHH
Confidence 566777777777888888888887542 344689999999999874321 01 12 234445
Q ss_pred HHHHhhccCCCccchhhHHHHHHHHHhhhcC
Q 039062 155 LGYLCEEVSPDVVEQDHVNKILTAVVQGMNA 185 (871)
Q Consensus 155 l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~ 185 (871)
+..+++.. ...+.......++..+.+.+..
T Consensus 89 lR~~ve~~-~~~~k~kt~~~Ll~hI~~~l~~ 118 (155)
T PF11640_consen 89 LRLFVEKS-NSRLKRKTVKALLDHITDLLPD 118 (155)
T ss_pred HHHHHHHH-HhhcccchHHHHHHHHHHHhhC
Confidence 55555554 4445456677888888888884
No 381
>PHA01351 putative minor structural protein
Probab=38.87 E-value=6.2e+02 Score=28.62 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=22.0
Q ss_pred HhcccccccccchHHHHHHHHHHHc----CCChhhHHHHHHHH
Q 039062 824 TLGSNAGSLIQQSLTSKDFLNECLS----SKDHMIKESAEWAR 862 (871)
Q Consensus 824 ~~~~~~~~~l~~~~~v~~~l~~~~~----~~~~~~~~~~~~~~ 862 (871)
..+..|..-+.-+ +.+++++.-- ..|+.....+.|.-
T Consensus 241 ~ikepfisdfkis--~reifneiglgdipfadp~f~~i~~wv~ 281 (1070)
T PHA01351 241 FIKEPFISDFKIS--AREIFNEIGLGDLPFADPPFQLIGRWVA 281 (1070)
T ss_pred Hhhccchhhhhhh--HHHHHHhcCCCCCCCCCCcHHHHHHHHH
Confidence 3334444333333 6677777753 26778888888853
No 382
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=38.55 E-value=65 Score=21.79 Aligned_cols=34 Identities=29% Similarity=0.289 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhh
Q 039062 89 VKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIE 123 (871)
Q Consensus 89 ~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~ 123 (871)
..+++|+.+++.|...+.. |.....+|+.+....
T Consensus 3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 3578999999999988765 888888888887653
No 383
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=36.46 E-value=2.6e+02 Score=26.62 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=51.8
Q ss_pred HHHHHHHc-CCCcccchHHHHHhhhcC-CChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHH
Q 039062 353 LGLVARTV-GDDIVPLVIPFIEENIAK-PDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTT 430 (871)
Q Consensus 353 l~~l~~~~-~~~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a 430 (871)
++.++..+ +-..+|.+++.......+ .-|..|.+....+...-+.. +...+++.+-..+ .|..+.|+.+.
T Consensus 103 vD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~~-------~~~~if~i~E~~l-~d~e~fV~KAi 174 (222)
T COG4912 103 VDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKTL-------DLLEIFEIIELLL-GDKEFFVQKAI 174 (222)
T ss_pred HHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCcc-------chhHHHHHHHHHc-cChHHHHHHHH
Confidence 34455544 335566776666433333 34665655555444443332 2235778777888 99999999999
Q ss_pred HHHHHHHhhhh
Q 039062 431 AWTLGRIFEFL 441 (871)
Q Consensus 431 ~~~l~~~~~~~ 441 (871)
-|+|.+++.+.
T Consensus 175 gWaLrq~~k~~ 185 (222)
T COG4912 175 GWALRQIGKHS 185 (222)
T ss_pred HHHHHHHHhhc
Confidence 99999999844
No 384
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=36.35 E-value=5.9e+02 Score=27.61 Aligned_cols=88 Identities=11% Similarity=0.087 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCch
Q 039062 519 ESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTK 598 (871)
Q Consensus 519 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 598 (871)
..++|....+.+-.+.+..|.-+...-..++ +.+.+.. +...++ ++..+++|+++.-........++.
T Consensus 281 ~~eV~rvlss~ll~lfk~~PsLvv~l~~~il----ef~g~~~-----~~~~k~---~l~~hlvWaIGEy~s~~~d~rct~ 348 (459)
T PF14764_consen 281 QAEVRRVLSSQLLALFKRHPSLVVELSKEIL----EFLGSAS-----NIHSKE---ELFTHLVWAIGEYLSVSYDRRCTV 348 (459)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHhHHHHH----HHhcccc-----cccchh---HHHHHHHHHHhcccccccCCccCH
Confidence 4577877888888888877743333333333 3332211 111121 355678888776544333333445
Q ss_pred hhhhhhHHHHHHHHHHHHcc
Q 039062 599 YVFMQYADQIMGLFLRVFAC 618 (871)
Q Consensus 599 ~~~~~~~~~i~~~l~~~l~~ 618 (871)
+.+..|.+.+=-.+++..+.
T Consensus 349 ~~i~~~fE~LE~llyE~~~~ 368 (459)
T PF14764_consen 349 EQINEFFEALEALLYEVTQS 368 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 55666665544445555544
No 385
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=34.78 E-value=2.8e+02 Score=23.36 Aligned_cols=92 Identities=11% Similarity=0.075 Sum_probs=47.7
Q ss_pred CCcCCchHHHHHHHHHHhhc---cChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCc
Q 039062 705 HRSVKPPIFSCFGDIALAIG---ENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSP 781 (871)
Q Consensus 705 ~~~v~~~~~~~l~~i~~~~~---~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~ 781 (871)
+.+-.+.++.....++..-. .+...|...++..+...=+.. +.+ .....|.+++-++ +...
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f------~~~---~Fe~~R~~alval---~v~~---- 81 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKF------DIE---NFEELRQNALVAL---VVAA---- 81 (114)
T ss_dssp --S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--------T---TTTHHHHHHHHHH---HHHS----
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccC------Ccc---CHHHHHHHHHHHH---HHHh----
Confidence 35566778888888886644 488888888888887544322 111 1245665554433 3331
Q ss_pred cccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 039062 782 KTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGD 820 (871)
Q Consensus 782 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~ 820 (871)
+. .+.+.+...+-.++-+-.-|..++.+++.
T Consensus 82 -P~-------~~~~~L~~~f~~~~~Sl~qR~~iL~~l~~ 112 (114)
T PF10193_consen 82 -PE-------KVAPYLTEEFFSGDYSLQQRMSILSALSL 112 (114)
T ss_dssp -GG-------GHHH-HHHHHTTS---THHHHHHHHHHHH
T ss_pred -hH-------HHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 22 23444444443344566668888888775
No 386
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=34.65 E-value=1.1e+02 Score=28.35 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Q 039062 187 EMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSIS 247 (871)
Q Consensus 187 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~ 247 (871)
..+..+...+++|+..++....+. ......+..+..+..++.+++..+|..+++.|+.++
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~~G~-~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTKYGL-EAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSHHHH-HHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccHHHH-HHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 466788888999998887643211 000011445777888888899999999999998775
No 387
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=34.10 E-value=6.7e+02 Score=27.61 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHccc-CcchhhhHHHHHHHHHHH
Q 039062 606 DQIMGLFLRVFACR-SATVHEEAMLAIGALAYA 637 (871)
Q Consensus 606 ~~i~~~l~~~l~~~-~~~~~~~a~~~l~~l~~~ 637 (871)
..+++.++..|... ++.++..|...|..++..
T Consensus 61 q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~i 93 (475)
T PF04499_consen 61 QNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRI 93 (475)
T ss_pred hCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 34555555555422 333444555555555443
No 388
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=32.15 E-value=1.9e+02 Score=22.20 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=39.9
Q ss_pred ccHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhC
Q 039062 2 AMEVTQVLLNAQSIDGTVRKHAEESLKQFQEQ-NLPSFLLSLSGELAN 48 (871)
Q Consensus 2 ~~~l~~~l~~~~s~~~~~r~~A~~~L~~~~~~-~~~~~~~~l~~il~~ 48 (871)
+++|..=+..++..+++.+.+-.+.|+++... +-+.+.+.|.-+|..
T Consensus 5 A~eF~~Kvd~iL~~dp~~Ke~l~~aLk~Ya~~k~vd~l~~aL~~~L~~ 52 (80)
T cd07354 5 AQEFSRKVDAILGDDPVKKEQVFAALKQYAADKNVDCLVWALCGLLQT 52 (80)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhCc
Confidence 45677788889999999999999999987665 778999999988875
No 389
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.04 E-value=1.4e+02 Score=32.41 Aligned_cols=76 Identities=13% Similarity=0.064 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHh
Q 039062 792 HILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSS-KDHMIKESAEWARLAINKAI 869 (871)
Q Consensus 792 ~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ 869 (871)
..+..|.+.+.+. ...+...|+.+|..+++.+|..|....-..+|+.++++..... .+..||+.+...+..=+..+
T Consensus 38 eAvralkKRi~~k--~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af 114 (470)
T KOG1087|consen 38 EAVRALKKRLNSK--NSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAF 114 (470)
T ss_pred HHHHHHHHHhccC--CcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHc
Confidence 6777777777753 3467888999999999999999997777777888888888877 78899998887776655544
No 390
>PF10487 Nup188: Nucleoporin subcomplex protein binding to Pom34; InterPro: IPR018864 This is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes []. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically localised on both faces of the NPC at the nuclear end, being integrally bound to the C terminus of Pom34p [].
Probab=30.72 E-value=1.1e+03 Score=28.89 Aligned_cols=189 Identities=14% Similarity=0.122 Sum_probs=88.8
Q ss_pred hhhHHHHHHHHHHhhcCCCh------hhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchh
Q 039062 381 WRQREAATYAFGSILEGPSP------DKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQA 454 (871)
Q Consensus 381 ~~~r~~a~~~l~~l~~~~~~------~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 454 (871)
|.+++.+...+|...+.... ..-.+.+..++..+-..+ ....+ + ..+...+..++.... ..+
T Consensus 515 w~~~ysgw~lLG~~Le~~~~~~~~~d~~~~~~v~~ii~Ll~~l~-~~~~~-~-~~~~~iL~~~S~~l~---------~~D 582 (931)
T PF10487_consen 515 WEYEYSGWALLGRWLENLLKSYSELDSLQDERVAEIIDLLASLL-SSDNS-I-EDSKEILEEASAYLD---------HSD 582 (931)
T ss_pred EeecchHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHH-ccCcc-h-hHHHHHHHHHhhccc---------cCc
Confidence 88999999888888764210 111233455555555554 33222 1 223445555554442 124
Q ss_pred hHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccC-----CCCCCC-----cchHHHHHHHHHHhhccCChhhhhHH
Q 039062 455 NCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDV-----GPSSPL-----TPFFQEIVQSLLTVTHREDAGESRLR 523 (871)
Q Consensus 455 ~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~-----~~~~~l-----~~~~~~il~~l~~~l~~~~~~~~~vr 523 (871)
.+..++..+-+.+.. +-.+-..|..++..++..+... ...+.+ ..+...++..+-..-. +...-
T Consensus 583 IisvI~~ile~~L~~~~v~ll~scl~fL~aL~p~~p~rVW~~L~rS~LL~~~g~~G~~s~ilgs~E~~~G-----~Y~ft 657 (931)
T PF10487_consen 583 IISVIFDILERSLQSRNVELLTSCLRFLTALLPIFPGRVWSYLSRSSLLGSDGKGGLASVILGSIEMVSG-----RYDFT 657 (931)
T ss_pred HHHHHHHHHHHHcccCChHHHHHHHHHHHHHhccChHHHHHHHhhCcCcccCCccchHHHhhhhhhccCC-----cchHH
Confidence 455555555555554 3466677777777776543211 001111 1222333222111111 22333
Q ss_pred HHHHHHHHHHHHhc-------CC-CcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHH
Q 039062 524 TAAYETLNEVVRSS-------TD-ETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQ 589 (871)
Q Consensus 524 ~~a~~~l~~l~~~~-------~~-~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 589 (871)
.+++.....+++.+ +. .....+..++-.+.+.++....+.-++..++. ++-..++..+..+..
T Consensus 658 ls~lkL~~~Lv~~als~~~~~~~~~~~~vL~~~~~~l~eVfes~~~Wrf~~~~qR~---eIg~~i~~~f~~IL~ 728 (931)
T PF10487_consen 658 LSLLKLFSALVDDALSSNSGVPSKTKSVVLPKIVFHLVEVFESFSTWRFNSPGQRF---EIGRSILSIFSKILY 728 (931)
T ss_pred HHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhhcCCceeCCChhhHH---HHHHHHHHHHHHHHH
Confidence 45556666665432 11 12344555555566666655444444444443 233345555555544
No 391
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=30.67 E-value=6.3e+02 Score=26.22 Aligned_cols=199 Identities=15% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHhhhccCCCHHHHHHHHHHHHHhhc------CCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHH
Q 039062 76 FELVQRWLSLDANVKTQIKTCLLNTLT------STVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQ 149 (871)
Q Consensus 76 ~~~~~~~~~~~~~~~~~i~~~ll~~l~------~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~ 149 (871)
.+..+.|....+.........+...|. +.+...+..+..++..|.... ++.+...+.+.+.....
T Consensus 4 ~~l~~~W~~~~~~n~~~~~~~~~~~L~~~l~~ls~~~~~~~~g~~l~~~iL~~~---------~k~lyr~L~~~~~~~~~ 74 (330)
T PF11707_consen 4 SELLQIWSYAAQVNNHSLLSLVSSVLALLLKKLSSDLSFQSYGLELIRSILQNH---------LKLLYRSLSSSKPSLTN 74 (330)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH---------HHHHHHHhCcCcHHHHH
Q ss_pred HHHHHHHHHhhccCCCccchhhHHHH---HHHHHhhhcCCCCCH--------------HHHHHHHHHHHHhhhcchhccc
Q 039062 150 ATLETLGYLCEEVSPDVVEQDHVNKI---LTAVVQGMNASEMNN--------------DVRLAATRALYNALSFAQANFS 212 (871)
Q Consensus 150 ~al~~l~~l~~~~~~~~~~~~~~~~i---~~~l~~~l~~~~~~~--------------~vr~~al~~l~~~~~~~~~~~~ 212 (871)
.+++.+..++... +.....+.+..+ .+.+-..+. +.. .+|...++.+..++...+....
T Consensus 75 ~~LrLL~~iv~f~-~g~~a~~v~~~fd~~~~~l~kll~---~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~ 150 (330)
T PF11707_consen 75 PALRLLTAIVSFD-GGALAREVLRSFDFSLKSLPKLLT---PRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELK 150 (330)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHhcCCchhhHHHHhc---cccccccccccccccCcCHHHHHHHHHHHHHccCCHHHH
Q ss_pred ChhhH-HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHH------HHHHHHHHHhhCCCh----hHHHHHH
Q 039062 213 NDMER-DYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQ------DIYSITAKAVREDEE----PVALQAI 281 (871)
Q Consensus 213 ~~~~~-~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~------~l~~~~~~~~~~~~~----~~~~~a~ 281 (871)
.+-.. ..++..++..+..+++++....++++..-+-... .+.+..+ ..+.-+.......++ .++..+-
T Consensus 151 ~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~-~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh 229 (330)
T PF11707_consen 151 RDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS-SVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVH 229 (330)
T ss_pred HHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC-CCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHH
Q ss_pred HHHHHHH
Q 039062 282 EFWSSIC 288 (871)
Q Consensus 282 ~~~~~l~ 288 (871)
+|+..+|
T Consensus 230 ~fL~~lc 236 (330)
T PF11707_consen 230 EFLLALC 236 (330)
T ss_pred HHHHHHh
No 392
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=29.99 E-value=6.7e+02 Score=26.31 Aligned_cols=108 Identities=14% Similarity=0.116 Sum_probs=66.5
Q ss_pred hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhcc--------------CcHHHH
Q 039062 171 HVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQS--------------AELKIR 236 (871)
Q Consensus 171 ~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~--------------~~~~~~ 236 (871)
.....+..+++++.. +.+|+|-...+.-+...+.+.. .+.... .+.+...+++.+.+ ...|+.
T Consensus 138 ~is~~~~~il~~L~~-e~dWeV~s~VL~hLp~qL~Nk~-Lf~~~~-I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~ 214 (356)
T PF03542_consen 138 PISEWFSVILQCLEH-ETDWEVYSYVLVHLPSQLSNKA-LFLGAD-IDQLRNALCSMICDRSFLESLSNKPTGFKRADLQ 214 (356)
T ss_pred eHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHhhhhH-HhccCc-HHHHHHHHHHHHhcccccccccCCCCCCCHHHHH
Confidence 356677788888876 7899998888887777654322 111111 34444555443321 135788
Q ss_pred HHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHH
Q 039062 237 QAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFW 284 (871)
Q Consensus 237 ~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~ 284 (871)
...+..|..++..+..+-...-++++..+...+.+. ....|+..+
T Consensus 215 ~~~~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s~---~a~~CI~aL 259 (356)
T PF03542_consen 215 VCVFPVLSALISYHSHFSKQEQDEIVRALESGLGSK---TAKPCIHAL 259 (356)
T ss_pred HHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHhccC---cHHHHHHHH
Confidence 888999999987654443444557888887777653 334444444
No 393
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=28.51 E-value=4.3e+02 Score=23.66 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=38.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHhhccCC--CccchhhHHHHHHHHHhhhc
Q 039062 133 IVSLLSNVHQLPAHVKQATLETLGYLCEEVSP--DVVEQDHVNKILTAVVQGMN 184 (871)
Q Consensus 133 l~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~~i~~~l~~~l~ 184 (871)
+..++..++++....|..|+.-|..+...- + ..++...+..++..++.++.
T Consensus 6 i~~~~~~L~S~k~keR~~al~~L~~il~~~-~~~~~l~~k~~~~ifeaL~~~i~ 58 (155)
T PF11640_consen 6 INSILRLLSSDKIKERNKALEDLRHILSSP-PRVDSLNDKQWHSIFEALFRCIE 58 (155)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHcCc-cccccCCcchHHHHHHHHHHHHH
Confidence 455778888888889999999999998764 3 44556677777777776553
No 394
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=28.43 E-value=9.1e+02 Score=27.37 Aligned_cols=198 Identities=12% Similarity=0.169 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhh-hhhHhHHHHHHhh
Q 039062 578 GLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFA-KYMPDFYKYLEMG 656 (871)
Q Consensus 578 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~l~~i~~~l~~~ 656 (871)
...+..+..++..+-. |......++..+..++..++..+|..|+.++..++...+..+. +.+....-..++.
T Consensus 260 ~~~L~~l~~l~~~~~~-------f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~n 332 (661)
T KOG2256|consen 260 AFTLRHLTVLVPFLAT-------FPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRN 332 (661)
T ss_pred HHHHHHHHHHHHHHhh-------HHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 3344455555444332 5667788888888889889889999999999988887765432 2233222222211
Q ss_pred h--cCCcchh----HHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCc-------hHHHHHHHHHH-h
Q 039062 657 L--QNFEEYQ----VCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKP-------PIFSCFGDIAL-A 722 (871)
Q Consensus 657 l--~~~~~~~----v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~-------~~~~~l~~i~~-~ 722 (871)
. .+.+.+. .+..++++++-=.+..-..-.-|+.++--.|-+.+...+ ....+. ..+..-.++.. .
T Consensus 333 sk~~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRnam~~k~-K~s~~~VYnWqfi~cL~lW~rvisf~ 411 (661)
T KOG2256|consen 333 SKFVTVNTLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRNAMITKN-KESVQSVYNWQYVHCLDLWLRVISFA 411 (661)
T ss_pred CCCCCCcccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1111111 222333333211111111122344455444555554432 111110 11112222222 2
Q ss_pred hc--cChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHH
Q 039062 723 IG--ENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLD 798 (871)
Q Consensus 723 ~~--~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~ 798 (871)
.| +.+.|.+..+++.+.-.+...+.+ ..-.+|--+++.+..|.... ..|.|..+.+...+.
T Consensus 412 ~~~~s~lq~LvYpLvQvi~GvirLipT~---------qy~PLRlhcir~Li~Ls~ss------g~fIPi~~ll~Eml~ 474 (661)
T KOG2256|consen 412 NGSASQLQPLVYPLVQVILGVIRLIPTP---------QYYPLRLHCIRSLISLSRSS------GTFIPLSPLLVEMLK 474 (661)
T ss_pred hccHhhhhhhhhHHHHHHHHHhhhcCcc---------cchhHHHHHHHHHHHHHhhc------CceeecHHHHHHHHH
Confidence 22 345555555555555555543311 13678888888888888763 346665555555543
No 395
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=28.37 E-value=3.1e+02 Score=22.89 Aligned_cols=66 Identities=9% Similarity=0.128 Sum_probs=46.9
Q ss_pred chHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHH
Q 039062 789 YAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESA 858 (871)
Q Consensus 789 ~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~ 858 (871)
+...|+..+...+.. ...+-+..++-++.+|++..+..-..++.. +..+++..+-...|.++|+..
T Consensus 34 ~a~~iv~~i~~~i~~--~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~--~~~~~f~~~~~~~~~~~r~kl 99 (114)
T cd03562 34 HAKEIVEIIEKHIKK--CPPEQKLPLLYLLDSIVKNVGRKYKEFFSE--FLVPLFLDAYEKVDEKTRKKL 99 (114)
T ss_pred HHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHHHcccchHHHHHH--HHHHHHHHHHHhCCHHHHHHH
Confidence 455777777776654 345678899999999999998776555544 346666666666788877543
No 396
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=28.19 E-value=3.7e+02 Score=22.96 Aligned_cols=62 Identities=15% Similarity=0.312 Sum_probs=43.0
Q ss_pred ccHhHHHHHHHHHHHHHc-CCCcccchHHHHHhhh---cCCChhhHHHHHHHHHHhhcCCChhhhhHHHH
Q 039062 343 WNIAMAGGTCLGLVARTV-GDDIVPLVIPFIEENI---AKPDWRQREAATYAFGSILEGPSPDKLLHIVN 408 (871)
Q Consensus 343 ~~~r~~a~~~l~~l~~~~-~~~~~~~l~~~l~~~l---~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~ 408 (871)
|.+. ...+..++... ...-++.++..+...+ ...+|+...-++.++..+..... ..+...+.
T Consensus 17 ~gp~---~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~-~~~~~~~~ 82 (125)
T PF01417_consen 17 WGPP---GKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGS-ERFVDELR 82 (125)
T ss_dssp SS-----HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS--HHHHHHHH
T ss_pred CCcC---HHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCC-HHHHHHHH
Confidence 6554 45666776654 3355677888888888 56889999999999999998753 55544443
No 397
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=27.89 E-value=5.5e+02 Score=24.66 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=31.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHhCCCCC
Q 039062 7 QVLLNAQSIDGTVRKHAEESLKQFQEQN--------LPSFLLSLSGELANDDKP 52 (871)
Q Consensus 7 ~~l~~~~s~~~~~r~~A~~~L~~~~~~~--------~~~~~~~l~~il~~~~~~ 52 (871)
...+.+-|.|+.+|.+|-+.|..+-... .-..+-.|...++..+.+
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkp 57 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKP 57 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCc
Confidence 3556677899999999999998765542 124556677777764433
No 398
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=27.67 E-value=5.9e+02 Score=24.92 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHHhhhc----chhcccChhhH---HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHh--HH-----
Q 039062 187 EMNNDVRLAATRALYNALSF----AQANFSNDMER---DYIMRVVCEATQSAELKIRQAAFECLVSISSTY--YE----- 252 (871)
Q Consensus 187 ~~~~~vr~~al~~l~~~~~~----~~~~~~~~~~~---~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--~~----- 252 (871)
|.++.|.+.++.|..++... .......+..| ..+.+.++..+.+.++.+|..+++++..++-.. +.
T Consensus 4 d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~ 83 (239)
T PF11935_consen 4 DEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPP 83 (239)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS--
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 78899999999998887542 21111112223 335666777788889999999999999887542 10
Q ss_pred -----------------------hhHHhHHHHHHHHHHHhhCCC--hhHHHHHHHHHHHHHHH
Q 039062 253 -----------------------KLAPYMQDIYSITAKAVREDE--EPVALQAIEFWSSICDE 290 (871)
Q Consensus 253 -----------------------~~~~~~~~l~~~~~~~~~~~~--~~~~~~a~~~~~~l~~~ 290 (871)
.+..--..+++.++..+.++. ......++..+..+++.
T Consensus 84 ~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~ 146 (239)
T PF11935_consen 84 RRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQ 146 (239)
T ss_dssp -GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence 011111246777777776554 45555667777777664
No 399
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=26.62 E-value=9.9e+02 Score=27.20 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=51.8
Q ss_pred HHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHH
Q 039062 352 CLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTA 431 (871)
Q Consensus 352 ~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~ 431 (871)
++-.+++-.|.++.-.. +...+.=.++..|.+.=.+++-++-+- |. -.++..+.+.. .|.+..|...++
T Consensus 628 AliAMgeeig~eM~lR~---f~h~l~yge~~iRravPLal~llsvSN-Pq------~~vlDtLsk~s-hd~D~eva~naI 696 (878)
T KOG2005|consen 628 ALIAMGEEIGSEMVLRH---FGHLLHYGEPHIRRAVPLALGLLSVSN-PQ------VNVLDTLSKFS-HDGDLEVAMNAI 696 (878)
T ss_pred hhhhhhhhhhhHHHHHH---HHHHHHcCCHHHHHHHHHHHhhhccCC-Cc------chHHHHHHHhc-cCcchHHHHHHH
Confidence 34445555555443232 333334456788999888888877653 22 23577777788 999999999999
Q ss_pred HHHHHHhhhh
Q 039062 432 WTLGRIFEFL 441 (871)
Q Consensus 432 ~~l~~~~~~~ 441 (871)
.++|-++...
T Consensus 697 famGLiGAGT 706 (878)
T KOG2005|consen 697 FAMGLIGAGT 706 (878)
T ss_pred HHhccccCCc
Confidence 9988776544
No 400
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=26.37 E-value=6.4e+02 Score=24.94 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=41.5
Q ss_pred HHHHHHhhcC-CChHHHHHHHHHHHHHhhccCCCccchhhHHHH--HHHHHhhhcCCCCCHHHHHHHHHHHHHhh
Q 039062 133 IVSLLSNVHQ-LPAHVKQATLETLGYLCEEVSPDVVEQDHVNKI--LTAVVQGMNASEMNNDVRLAATRALYNAL 204 (871)
Q Consensus 133 l~~L~~~l~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i--~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (871)
+..++..+.. ....+..+++.+|-.+.-.. |... ..++.+ +..+...+++...+.++|..+++.+.-++
T Consensus 135 m~lll~LL~~~~~~~i~~a~L~tLv~iLld~-p~N~--r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 135 MELLLDLLSPSNPPAIQSACLDTLVCILLDS-PENQ--RDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHcC-hHHH--HHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHHHH
Confidence 4445555533 34567777888887766655 3221 222222 34566666655678889988888887754
No 401
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=26.15 E-value=9.7e+02 Score=26.90 Aligned_cols=67 Identities=12% Similarity=0.056 Sum_probs=47.9
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHH
Q 039062 223 VVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEE 291 (871)
Q Consensus 223 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~ 291 (871)
.++....+-++.+|..+...+...+..+|+.+.... .+.+..-.+.+.+..+|......+..++...
T Consensus 279 vfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~ 345 (740)
T COG5537 279 VFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRI 345 (740)
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcC
Confidence 334455667888899999999988888888776543 3444434456777889998888888887753
No 402
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=26.12 E-value=4.2e+02 Score=28.23 Aligned_cols=150 Identities=12% Similarity=0.089 Sum_probs=74.6
Q ss_pred HHHHHhhcCCc--hHHHHHHHHHHHHHHhhhcCCCCch-HHHHHHHHhhcC-CChHHHHHHHHHHHHHhhccCCCccchh
Q 039062 95 TCLLNTLTSTV--ADARSTSSQVIAKVAGIELPQKQWP-ELIVSLLSNVHQ-LPAHVKQATLETLGYLCEEVSPDVVEQD 170 (871)
Q Consensus 95 ~~ll~~l~~~~--~~vr~~~a~~l~~i~~~~~~~~~~~-~ll~~L~~~l~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~ 170 (871)
+.|++.+..++ ..||..++.++..+.... +.+..- -=+..++..... ...+.....+.++..++++. .+.- +.
T Consensus 183 D~Llrmf~aPn~et~vRve~~rlLEq~~~ae-N~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS-eet~-~~ 259 (832)
T KOG3678|consen 183 DLLLRMFQAPNLETSVRVEAARLLEQILVAE-NRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHS-EETC-QR 259 (832)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHhhh-hhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhh-HHHH-HH
Confidence 45677788877 478999999998886543 100000 002233333322 22344455666666666554 1110 00
Q ss_pred -hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Q 039062 171 -HVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISST 249 (871)
Q Consensus 171 -~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 249 (871)
.-...+..++..+. -.++.+-..+.-+++++.-+....-........+-+-++.+..+.|.-.|..||-....++..
T Consensus 260 Lvaa~~lD~vl~~~r--Rt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 260 LVAAGGLDAVLYWCR--RTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred HHhhcccchheeecc--cCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 01122234455555 344555555555677776543321111111122333344444455777788888777777654
No 403
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=25.69 E-value=4e+02 Score=24.91 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=55.4
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHH
Q 039062 177 TAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAP 256 (871)
Q Consensus 177 ~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 256 (871)
+.+..... +++.-+|.+|+.++..++.- ....+.++..+-..+.+++.-++.++..+|..+...+++...+
T Consensus 108 ~~~~~w~~--s~~~~~rR~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~ 178 (197)
T cd06561 108 DLLEEWAK--SENEWVRRAAIVLLLRLIKK-------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIA 178 (197)
T ss_pred HHHHHHHh--CCcHHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 44556666 67888888888777664432 1234778888888888888899999999999999887777666
Q ss_pred hHHH
Q 039062 257 YMQD 260 (871)
Q Consensus 257 ~~~~ 260 (871)
++..
T Consensus 179 ~l~~ 182 (197)
T cd06561 179 FLEK 182 (197)
T ss_pred HHHH
Confidence 6554
No 404
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=25.50 E-value=2.4e+02 Score=26.16 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=41.3
Q ss_pred CChhhHHHHHHHHHHhhcCCChhhhhHHH--HHHHHHHHHHccCCCcHHHHHHHHHHHHHHh
Q 039062 379 PDWRQREAATYAFGSILEGPSPDKLLHIV--NVALSFMLSALTKDPNNHVKDTTAWTLGRIF 438 (871)
Q Consensus 379 ~~~~~r~~a~~~l~~l~~~~~~~~~~~~l--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~ 438 (871)
.+.......+.|+.+++... ..+...+ +..+..+...+ ..+++.+|..++..|+.++
T Consensus 128 ~~~~~~~~~l~Clkal~n~~--~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTK--YGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSH--HHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccH--HHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 34456677889999998863 3333333 56788899999 9999999999999988765
No 405
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=25.25 E-value=8.2e+02 Score=25.80 Aligned_cols=311 Identities=10% Similarity=0.066 Sum_probs=0.0
Q ss_pred ccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCC--------hhhhhHHHHHHHHHHHHHccCCC----cHHHHHHHHH
Q 039062 365 VPLVIPFIEENIAKPDWRQREAATYAFGSILEGPS--------PDKLLHIVNVALSFMLSALTKDP----NNHVKDTTAW 432 (871)
Q Consensus 365 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~--------~~~~~~~l~~i~~~l~~~l~~d~----~~~vr~~a~~ 432 (871)
+|++-+.+...-.+.--..+++.+..+.+++.... ...+.......+..+.+.+ .-+ ++.......+
T Consensus 13 L~Ev~~l~~~a~~~~~~~~~~~l~~Ff~avG~~~~~lq~~s~~k~~m~~k~~~Y~g~~~k~i-~p~l~~~~se~l~~~Y~ 91 (373)
T PF14911_consen 13 LPEVKSLFSKAQLDSREDPKEPLCQFFKAVGKRYQQLQTLSEGKSQMVTKLLEYFGDFEKWI-KPYLKSKSSEGLQRIYR 91 (373)
T ss_pred cHHHHHHHHhcccccccCcccHHHHHHHHHHHHhhHhHhhHHHHHHHHHHHHHHHHHHHHHc-CCccccCCHHHHHHHHH
Q ss_pred HHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhcc-------C---ChHHHHHHHHHHHHHHhhc--ccCCCCCCCcch
Q 039062 433 TLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMK-------D---TPNVAEKACGALYFLAQGY--EDVGPSSPLTPF 500 (871)
Q Consensus 433 ~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-------d---~~~v~~~a~~~l~~l~~~~--~~~~~~~~l~~~ 500 (871)
++|.+..+++.- ......-..+++.++.++- + ++.+....-..+..+.+++ -+......+...
T Consensus 92 ~lg~lvk~c~~l-----lytksk~~cll~~~vd~llLp~~l~~~k~l~~~l~~ai~k~lpl~lqGl~~~~~~~dayL~~~ 166 (373)
T PF14911_consen 92 VLGILVKHCSPL-----LYTKSKSQCLLFRIVDCLLLPTVLQQDKPLPPALLQAIRKSLPLFLQGLGRLSQRQDAYLNQQ 166 (373)
T ss_pred HHHHHHHhcchh-----heecCccccHHHHHHHHhcccccccCCCCCChHHHHHHHHHHHHHHHHHHhcccccChHHHHH
Q ss_pred HHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHH
Q 039062 501 FQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLL 580 (871)
Q Consensus 501 ~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 580 (871)
+.+++...+..+....+.....| +. .......+--..+...+++.+.+..-.-..+...+ -...+
T Consensus 167 l~~ii~~y~~~Fl~~~~~~~~~~---------l~-~~~~~~~~~~~~l~~~il~~i~~~fl~~~~~~p~p-----~l~~v 231 (373)
T PF14911_consen 167 LRNIIQQYLPRFLPASPSKLVAR---------LS-TLLSAFTPRNEELRKFILQVIRSNFLEFKGSAPPP-----RLASV 231 (373)
T ss_pred HHHHHHHHHhHhccCCCcccccc---------cc-ccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCC-----cHHHH
Q ss_pred HHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcc-c-CcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhc
Q 039062 581 CGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFAC-R-SATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQ 658 (871)
Q Consensus 581 ~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~-~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 658 (871)
+..+..+.+..... +.......+..+.+.+++++-- + .+.+|.-+...+..+++.....-.......+...++.+.
T Consensus 232 L~fl~~Ll~~~~~~--~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfv 309 (373)
T PF14911_consen 232 LAFLQQLLKRLQRQ--NENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFV 309 (373)
T ss_pred HHHHHHHHHhcCcc--cchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHH
Q ss_pred CCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHH
Q 039062 659 NFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKD 698 (871)
Q Consensus 659 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~ 698 (871)
.+....-....+..+..++.--++-+.+.++.+-..+.+.
T Consensus 310 qk~l~~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~~~ 349 (373)
T PF14911_consen 310 QKYLAHYTYQYFQFLEKVAELDPQLVISLIPTIRQSLKDS 349 (373)
T ss_pred HHHhhhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
No 406
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=24.82 E-value=1.1e+03 Score=26.97 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=71.2
Q ss_pred chHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCC
Q 039062 367 LVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTI 446 (871)
Q Consensus 367 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~ 446 (871)
.-+..+.+++-+.+..++-+|+..+|-...+. .+...+ .+..+...+ +.++..+|..++.-||-......
T Consensus 415 ~gL~qldkylys~~~~ikaGaLLgigi~~~gv-~ne~dp----alALLsdyv-~~~~s~~ri~aIlGLglayaGsq---- 484 (878)
T KOG2005|consen 415 KGLEQLDKYLYSDESYIKAGALLGIGISNSGV-FNECDP----ALALLSDYL-QSSSSIHRIGAILGLGLAYAGSQ---- 484 (878)
T ss_pred hhHHHHHHHhhcCCchhhhccceeeeeecccc-ccccCH----HHHHHHHhc-cCCCceeehHHhhhhHHhhcCCc----
Confidence 34667778887777778888888888777665 244333 455666778 88888899999888776544332
Q ss_pred CCCccchhhHHHHHHHHHHhccC---ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhh
Q 039062 447 GTPIITQANCQQIITVLLQSMKD---TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVT 512 (871)
Q Consensus 447 ~~~~~~~~~~~~il~~l~~~l~d---~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l 512 (871)
-+.++..|...+.| ...|..-|..+|..+.- +..=......|++.+++.-
T Consensus 485 ---------~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~Ifv-------Gscn~dvts~ilqtlmeks 537 (878)
T KOG2005|consen 485 ---------REEVLELLSPIMFDTKSPMEVVAFASLSLGMIFV-------GSCNEDVTSSILQTLMEKS 537 (878)
T ss_pred ---------hHHHHHHHhHHhcCCCCchhHHHHHHhhcceeEE-------ecCChHHHHHHHHHHHHhh
Confidence 12444444555554 23455555555544321 1112233455566555543
No 407
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=24.61 E-value=4.7e+02 Score=22.79 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=45.2
Q ss_pred HHHHHHhhhcCCCCch-----HHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHH--HHHHHhhhcCCC
Q 039062 115 VIAKVAGIELPQKQWP-----ELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKI--LTAVVQGMNASE 187 (871)
Q Consensus 115 ~l~~i~~~~~~~~~~~-----~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i--~~~l~~~l~~~~ 187 (871)
+.+.+|...|...+|. +.++.++.+++.+++...+.++-.+-.+| ++.-+..+...- ++.++..++ +
T Consensus 37 v~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC----~d~~n~~~I~ea~g~plii~~ls--s 110 (173)
T KOG4646|consen 37 VTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLC----LDKTNAKFIREALGLPLIIFVLS--S 110 (173)
T ss_pred HHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhc----cChHHHHHHHHhcCCceEEeecC--C
Confidence 3444544433225664 45677788888888877766655554444 322111111111 234556666 6
Q ss_pred CCHHHHHHHHHHHHHh
Q 039062 188 MNNDVRLAATRALYNA 203 (871)
Q Consensus 188 ~~~~vr~~al~~l~~~ 203 (871)
+...+-.+|+..+..+
T Consensus 111 p~e~tv~sa~~~l~~l 126 (173)
T KOG4646|consen 111 PPEITVHSAALFLQLL 126 (173)
T ss_pred ChHHHHHHHHHHHHHh
Confidence 6767777777666654
No 408
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=24.49 E-value=2.9e+02 Score=20.73 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhc
Q 039062 173 NKILTAVVQGMNASEMNNDVRLAATRALYNALSF 206 (871)
Q Consensus 173 ~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 206 (871)
+.+...++..+.+++.+..+|..|...|.+.+..
T Consensus 13 p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~ 46 (77)
T PF03810_consen 13 PGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKK 46 (77)
T ss_dssp TCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 4566677777754467899999999999998753
No 409
>KOG4346 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.63 E-value=1.1e+03 Score=26.86 Aligned_cols=286 Identities=10% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHH
Q 039062 502 QEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLC 581 (871)
Q Consensus 502 ~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (871)
+.-+.-+++.+.+.. +..+.++|+..+..++...|..+.++..+++..++..=++. +...+.+.+..++
T Consensus 507 PaYV~Dl~emL~~~E--~yE~~eaAL~nae~LI~r~pt~~rq~A~eLlq~lLhLqn~f---------~~~~F~etq~~ai 575 (849)
T KOG4346|consen 507 PAYVADLFEMLLEKE--KYEVFEAALFNAENLINRRPTGFRQIAEELLQRLLHLQNNF---------GTPKFKETQVDAI 575 (849)
T ss_pred chHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhc---------CccchhhhhHHHH
Q ss_pred HHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccC--cchhhhHHHH--HHHHHHHhhhhhh--------------
Q 039062 582 GCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRS--ATVHEEAMLA--IGALAYAAGLDFA-------------- 643 (871)
Q Consensus 582 ~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~~~~a~~~--l~~l~~~~~~~~~-------------- 643 (871)
-++ ....-+++-+.+...+-..+ ..+|...+.. |..-++.++.+=.
T Consensus 576 Va~----------------~vT~p~pcapylcrqf~a~n~~YS~rQRiliL~vi~lAA~els~ddn~~~e~~~~~ql~pG 639 (849)
T KOG4346|consen 576 VAA----------------CVTQPPPCAPYLCRQFIAPNQGYSIRQRILILSVIHLAADELSADDNKLEECVMAQQLRPG 639 (849)
T ss_pred HHH----------------HhcCCCcchhHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHhCccccccccccccccCCCC
Q ss_pred -hhhHhHHHHHHhhhcCCcchhHHHHHHHH---------------------------HHHHHHHhhhcccccHHHHHHHH
Q 039062 644 -KYMPDFYKYLEMGLQNFEEYQVCAVTVGV---------------------------VGDICRALEEKILPYCDGIMTQL 695 (871)
Q Consensus 644 -~~l~~i~~~l~~~l~~~~~~~v~~~a~~~---------------------------l~~l~~~~~~~~~~~~~~i~~~l 695 (871)
|+..-+.|.....=...++...+..+-++ -..+....+.-|.|.+...-...
T Consensus 640 ~ph~~~~~prt~~~~~e~es~p~~~lasewR~~ve~rirakTrrisk~pr~gp~~~kaNRl~~vag~ffFpLL~~~r~l~ 719 (849)
T KOG4346|consen 640 GPHLSIILPRTINTDYEDESEPHRLLASEWRRMVEARIRAKTRRISKTPREGPRAGKANRLAQVAGYFFFPLLVSLRRLE 719 (849)
T ss_pred CCcccccCCCCCCCChhhhcCcchhhhHHHHHHHHHHHHhhhhhhhcCCCCCCCCCcccchhhhhhhhhHHHHhhccccc
Q ss_pred HHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 039062 696 LKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQ 775 (871)
Q Consensus 696 ~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~ 775 (871)
-.-+-.. +..+-.+-+.++|-+....+.- |....+..-+++.+... ......+ +|++.+.+...+..
T Consensus 720 ~~kllgi--D~llLv~ll~Tls~L~~~~~n~--~~~~AM~relid~~~~~------Rf~~da~---Vr~alL~a~l~vL~ 786 (849)
T KOG4346|consen 720 NAKLLGI--DSLLLVSLLMTLSMLYVRCGNC--PQIHAMSRELIDYATPH------RFSEDAK---VRTALLIAHLNVLT 786 (849)
T ss_pred chhhcCc--cHHHHHHHHHHHHHHheeecCC--chHHHHHHHHHHHHHHH------hcchhhH---HHHHHHHHHHHHHH
Q ss_pred hccCCccccccccchHHHHHHHHHHhcCC-C---CCHHHHHHHHHHHHHHHhHhcc
Q 039062 776 GFKNSPKTQLLIPYAPHILQFLDSMYMEK-D---MDELVMKTAIGLLGDLADTLGS 827 (871)
Q Consensus 776 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~---~~~~~r~~a~~~l~~i~~~~~~ 827 (871)
.+......+.|.+.+-.+..-+...+.++ + .++..|..+.+.+..+-+....
T Consensus 787 ~lpg~~Lae~f~~~Lle~~~wlndv~esp~d~~~~~E~cR~La~svL~llqrL~d~ 842 (849)
T KOG4346|consen 787 LLPGDLLAELFVPALLEWFDWLNDVLESPSDSQLEKEMCRQLAHSVLKLLQRLHDA 842 (849)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHHHHHHHHhhh
No 410
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=23.24 E-value=5.9e+02 Score=23.37 Aligned_cols=98 Identities=20% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhh
Q 039062 4 EVTQVLLNAQS--IDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQR 81 (871)
Q Consensus 4 ~l~~~l~~~~s--~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~ 81 (871)
....+|+-+.. +|+.+|+-|.+.|..+..++.-.|+..|.+.+.-+..... .+|--++++.+..
T Consensus 70 ~~~~aLeLL~~~f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~~~ds--~La~FLl~Ral~n------------ 135 (171)
T cd00872 70 KPEQALELLDCNFPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLKYEPYHDS--DLVRFLLKRALRN------------ 135 (171)
T ss_pred CHHHHHHHCCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcccccCC--HHHHHHHHHHhcC------------
Q ss_pred ccCCCHHHHHHHHHHHHHhhcCCc--hHHHHHHHHHHHHHHhhhc
Q 039062 82 WLSLDANVKTQIKTCLLNTLTSTV--ADARSTSSQVIAKVAGIEL 124 (871)
Q Consensus 82 ~~~~~~~~~~~i~~~ll~~l~~~~--~~vr~~~a~~l~~i~~~~~ 124 (871)
..+-..++-.|..+. +.++...+.++....+..+
T Consensus 136 ---------~~igh~lfW~L~~E~~~~~~~~R~~~~le~~l~~~g 171 (171)
T cd00872 136 ---------QRIGHFFFWHLRSEMHNPSVSQRFGLLLEAYLRGCG 171 (171)
T ss_pred ---------HHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHhhCc
No 411
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=22.11 E-value=1.1e+02 Score=28.88 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHH
Q 039062 793 ILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAI 865 (871)
Q Consensus 793 i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 865 (871)
+.+++....+ ....+.+|..+++.||.+.+.-.+.+..++-.-+ |.|++-.+.+....--+-.|++.++.|
T Consensus 146 lypfLntss~-~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTe-ivPLcLrIme~gSElSktvaifI~qki 216 (315)
T COG5209 146 LYPFLNTSSS-NSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTE-IVPLCLRIMELGSELSKTVAIFIFQKI 216 (315)
T ss_pred eHhhhhcccc-CCccceeeehHHHHHHHHHhCCCHHHHHHHHhhh-HHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4455544433 3457778999999999999987666666655433 445655555555655556666665543
No 412
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=21.73 E-value=2e+02 Score=25.30 Aligned_cols=43 Identities=19% Similarity=0.407 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHH
Q 039062 218 DYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYS 263 (871)
Q Consensus 218 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~ 263 (871)
+.+.+.+..++.++++++++.|++|+...= .+.+.||-+.+-.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k---~~~l~pY~d~L~~ 58 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK---DPYLTPYKDNLEN 58 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---cHHHHhHHHHHHH
Confidence 567777888999999999999999998743 2355666544444
No 413
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=21.54 E-value=1.4e+03 Score=27.05 Aligned_cols=126 Identities=11% Similarity=0.084 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHH
Q 039062 477 ACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDE--TAPMVLQLVPVIMM 554 (871)
Q Consensus 477 a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~ll~~l~~ 554 (871)
+..+...+...| .+.+..|...++..+..++.+.. .+++..+..++..++....+. ...-++.+++.+.+
T Consensus 76 amea~~kLL~~C-----~eq~n~F~ssfL~mv~~LLes~~---~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~ 147 (819)
T KOG1877|consen 76 AMEAYDKLLQAC-----KEQINLFVSSFLRMVQKLLESNN---DEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSS 147 (819)
T ss_pred HHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHhcCC---CceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHH
Confidence 344455555555 35567788888888888887763 356677888888888766532 22234566666666
Q ss_pred HHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhh-hHHHHHHHHHHHHcc
Q 039062 555 ELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQ-YADQIMGLFLRVFAC 618 (871)
Q Consensus 555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~ 618 (871)
+.... +.++.. ..++...+.+|+.++...-.++-......+ +.+++++.+.-.++.
T Consensus 148 l~he~------~~~~~~--~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~ 204 (819)
T KOG1877|consen 148 LCHER------GDDDMK--DCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQS 204 (819)
T ss_pred Hhhcc------cchhhh--hhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcc
Confidence 65542 122211 134444556666665544111100011112 256666666655543
No 414
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=21.36 E-value=7.2e+02 Score=23.67 Aligned_cols=107 Identities=14% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHcC---CCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHH
Q 039062 351 TCLGLVARTVG---DDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVK 427 (871)
Q Consensus 351 ~~l~~l~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr 427 (871)
+..+.++...+ -.--|.+.+.+.+...|++--.|.+|+.+.-...+... ...+...+...+ .|++..|+
T Consensus 96 d~vD~~~~~i~g~~~~~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~-------~~~l~~~~~~~~-~d~e~fI~ 167 (208)
T cd07064 96 DTVDSLAKVVGGILLADYPEFEPVMDEWSTDENFWLRRTAILHQLKYKEKTD-------TDLLFEIILANL-GSKEFFIR 167 (208)
T ss_pred HHHHHHHHHHhHHHHhCChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccC-------HHHHHHHHHHhC-CChHHHHH
Q ss_pred HHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHH
Q 039062 428 DTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACG 479 (871)
Q Consensus 428 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~ 479 (871)
.+.-|+|..++...+ +.+.+.+.+.-.. ++-.+..|+.
T Consensus 168 KAiGW~LRe~~k~d~--------------~~V~~fl~~~~~~m~~~s~rea~k 206 (208)
T cd07064 168 KAIGWALREYSKTNP--------------DWVRDFVAAHKLRLSPLSRREALK 206 (208)
T ss_pred HHHHHHHHHHhccCH--------------HHHHHHHHHhhhhcChhHHHHHHh
No 415
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=21.14 E-value=7.5e+02 Score=23.83 Aligned_cols=168 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccc-HHHHHHHHHHHccC------CCCCCcCCchHHHHHHHHHHhhccChHHhHHHHH
Q 039062 663 YQVCAVTVGVVGDICRALEEKILPY-CDGIMTQLLKDLSS------NQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAM 735 (871)
Q Consensus 663 ~~v~~~a~~~l~~l~~~~~~~~~~~-~~~i~~~l~~~l~~------~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~ 735 (871)
.++...++.++..+...-+..+.+| ++.+++.+...... .+...++-...+..++.|.......+...++.++
T Consensus 2 ~~~~~~~l~~l~~ll~~~~~~~sq~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~ 81 (223)
T PF10441_consen 2 GKSILLILEILKQLLSSKPWLFSQYNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLL 81 (223)
T ss_pred chHHHHHHHHHHHHHhcCchhccchhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHH
Q ss_pred HHHHHHHhhcccCCCCChhHHHHHHHHHHHH--HHHHHHHhhhccCC------------------ccccccccchHHHHH
Q 039062 736 PMLQSAADLSAHTANVDDDMTEYTNSLRNGI--LEAYSGIFQGFKNS------------------PKTQLLIPYAPHILQ 795 (871)
Q Consensus 736 ~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~--~~~~~~l~~~~~~~------------------~~~~~~~~~~~~i~~ 795 (871)
+.+...+..-......... .....-... ...+..++..+++. ...+.+..|++.++-
T Consensus 82 ~~l~~LL~~l~~~~~~~~~---~~~~~s~~~~~a~~~aRlL~~l~ep~~~~~~~~~~~~l~~~~~~~k~~~~kh~~~lL~ 158 (223)
T PF10441_consen 82 SVLQRLLRCLFSPNSQRSS---KQLGLSAEAEEAKAFARLLTNLCEPSSVSRSSKKTSSLTSATSSAKKSLRKHAPYLLA 158 (223)
T ss_pred HHHHHHHHHHHhcCccccc---cccccchhhHHHHHHHHHHHHHhCcccccccccccccccHHHHHHHHHHHhHHHHHHH
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccc
Q 039062 796 FLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLI 833 (871)
Q Consensus 796 ~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l 833 (871)
.......+.....++|..-...+-.|...++++-..++
T Consensus 159 ~Yi~~~~~~~l~~~vr~~L~pGiy~l~d~~s~~e~~~l 196 (223)
T PF10441_consen 159 NYISLQLKYTLPPEVREALMPGIYALFDVCSQHELQQL 196 (223)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCHHHHHHH
No 416
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=20.80 E-value=3.4e+02 Score=27.71 Aligned_cols=71 Identities=21% Similarity=0.287 Sum_probs=47.3
Q ss_pred CchH-HHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCC--CCHHHHHHHHHHHHH
Q 039062 128 QWPE-LIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASE--MNNDVRLAATRALYN 202 (871)
Q Consensus 128 ~~~~-ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~~vr~~al~~l~~ 202 (871)
.|.. +...+..++.+++...+.+|+.+|..+...+ |-. ..+...+...+-+.... + .-.+++..|-..++.
T Consensus 223 kWh~~i~~~l~~~L~s~eym~iRNai~vL~~i~~~F-P~v--~~~~~~l~~~l~~l~~~-e~~~R~Dlk~~a~~~~~~ 296 (298)
T PF11262_consen 223 KWHKRITKALISCLESKEYMHIRNAIIVLKKISPVF-PVV--DDHGEKLEKALEKLLEE-EKGKREDLKLLANSYLGH 296 (298)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhC-CCc--HHHHHHHHHHHHHHHHh-cccCcccHHHHHHHHHHh
Confidence 3543 5577888888889899999999999999888 543 34445555444444443 3 456666666555543
No 417
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=20.80 E-value=8.3e+02 Score=24.23 Aligned_cols=145 Identities=15% Similarity=0.132 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHhhcCCChhh-hh---HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHH
Q 039062 382 RQREAATYAFGSILEGPSPDK-LL---HIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQ 457 (871)
Q Consensus 382 ~~r~~a~~~l~~l~~~~~~~~-~~---~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 457 (871)
..|.-++-.+..++-...... +. ......+..++.....+..+..+..+++++.++...-... ........
T Consensus 78 ~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~-----~~~~~~~~ 152 (268)
T PF08324_consen 78 ESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR-----QLLLSHFD 152 (268)
T ss_dssp CC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH-----HHHHCTHH
T ss_pred ccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH-----HHHHhccc
Confidence 556666666666655421110 00 0012233333333314567778888999988887654210 00111222
Q ss_pred -HHHHHHHHhccC----ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHH
Q 039062 458 -QIITVLLQSMKD----TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNE 532 (871)
Q Consensus 458 -~il~~l~~~l~d----~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~ 532 (871)
.++..+...... ++.++.+++..+.+++-..... ..-...-..++..+...+..... ++.....++-|+|+
T Consensus 153 ~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~---~~~~~~~~~ll~~i~~~~~~~~~-d~Ea~~R~LvAlGt 228 (268)
T PF08324_consen 153 SSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKN---RSDEEWQSELLSSIIEVLSREES-DEEALYRLLVALGT 228 (268)
T ss_dssp TCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHC---TS-CCHHHHHHHHHHHHCHCCHT-SHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHhccccC-CHHHHHHHHHHHHH
Confidence 233333333333 4678888888888886554332 11223344466666664332211 45667789999999
Q ss_pred HHH
Q 039062 533 VVR 535 (871)
Q Consensus 533 l~~ 535 (871)
++.
T Consensus 229 L~~ 231 (268)
T PF08324_consen 229 LLS 231 (268)
T ss_dssp HHC
T ss_pred Hhc
Confidence 993
No 418
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=20.07 E-value=3.3e+02 Score=21.40 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=14.9
Q ss_pred HHHHHHHhcCC---CHHHHHHHHHHHHHHHhh
Q 039062 5 VTQVLLNAQSI---DGTVRKHAEESLKQFQEQ 33 (871)
Q Consensus 5 l~~~l~~~~s~---~~~~r~~A~~~L~~~~~~ 33 (871)
..+.|..+.+. -.++|+.|++....+...
T Consensus 11 ~~~~L~~I~~D~sVPRNIRr~a~ea~~~L~~e 42 (85)
T PF03685_consen 11 AIQMLERIINDTSVPRNIRRAAEEAKEILNNE 42 (85)
T ss_dssp HHHHHHHHHT-TTS-HHHHHHHHHHHHHCT-T
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHhCC
Confidence 44455554333 236777777766655544
Done!