Query 039062
Match_columns 871
No_of_seqs 266 out of 2588
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 09:37:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bpt_A Importin beta-1 subunit 100.0 5.3E-72 1.8E-76 671.0 97.4 843 3-870 4-860 (861)
2 1qgr_A Protein (importin beta 100.0 3.2E-69 1.1E-73 648.1 90.2 847 3-868 1-872 (876)
3 4fdd_A Transportin-1; heat rep 100.0 3.6E-64 1.2E-68 597.4 75.9 742 3-833 13-794 (852)
4 1wa5_C Importin alpha RE-expor 100.0 2.1E-47 7E-52 457.1 65.5 681 3-745 5-773 (960)
5 2x19_B Importin-13; nuclear tr 100.0 3.8E-43 1.3E-47 423.7 66.1 758 3-826 24-897 (963)
6 2x1g_F Cadmus; transport prote 100.0 1.4E-44 4.7E-49 435.5 47.2 767 3-834 7-917 (971)
7 3m1i_C Exportin-1; heat repeat 100.0 1E-41 3.4E-46 411.3 60.5 753 3-823 16-929 (1049)
8 1ibr_B P95, importin beta-1 su 100.0 3.9E-43 1.3E-47 388.7 43.7 456 3-468 1-461 (462)
9 4fdd_A Transportin-1; heat rep 100.0 1.5E-40 5.1E-45 394.7 60.8 718 37-866 10-783 (852)
10 3ibv_A Exportin-T; karyopherin 100.0 5.5E-39 1.9E-43 376.2 58.7 753 3-856 6-905 (980)
11 4hat_C Exportin-1; heat repeat 100.0 6.2E-38 2.1E-42 366.9 67.1 735 4-826 17-881 (1023)
12 1u6g_C TIP120 protein, CAND1; 100.0 1.4E-39 4.7E-44 402.0 54.8 660 3-744 6-744 (1230)
13 1qgr_A Protein (importin beta 100.0 1E-36 3.5E-41 365.8 58.2 711 50-870 12-830 (876)
14 2bpt_A Importin beta-1 subunit 100.0 1.4E-35 4.7E-40 355.3 67.5 717 15-825 53-859 (861)
15 3gjx_A Exportin-1; transport, 100.0 5.2E-34 1.8E-38 330.7 64.3 747 4-826 29-907 (1073)
16 1u6g_C TIP120 protein, CAND1; 100.0 2.7E-33 9.4E-38 345.8 62.3 695 38-823 7-764 (1230)
17 1b3u_A Protein (protein phosph 100.0 6.2E-33 2.1E-37 317.1 41.8 573 94-774 12-586 (588)
18 1b3u_A Protein (protein phosph 100.0 1.4E-31 4.9E-36 305.8 39.8 573 176-867 12-587 (588)
19 3a6p_A Exportin-5; exportin-5, 100.0 6.9E-29 2.4E-33 299.4 40.4 508 1-558 9-682 (1204)
20 2x1g_F Cadmus; transport prote 99.9 1.4E-21 4.9E-26 235.2 45.0 651 140-846 16-743 (971)
21 1wa5_C Importin alpha RE-expor 99.9 1E-19 3.5E-24 217.7 53.3 682 92-859 6-783 (960)
22 2x19_B Importin-13; nuclear tr 99.9 3.9E-19 1.3E-23 214.3 53.4 653 131-848 25-737 (963)
23 1ibr_B P95, importin beta-1 su 99.9 3.1E-19 1.1E-23 196.8 32.3 420 225-700 7-461 (462)
24 3now_A UNC-45 protein, SD10334 99.8 6.6E-17 2.3E-21 181.2 44.4 685 5-776 8-783 (810)
25 2vgl_B AP-2 complex subunit be 99.8 4.6E-17 1.6E-21 183.0 37.6 512 4-634 14-530 (591)
26 3now_A UNC-45 protein, SD10334 99.8 1.3E-15 4.6E-20 170.7 48.9 660 134-866 9-736 (810)
27 3m1i_C Exportin-1; heat repeat 99.8 8.5E-15 2.9E-19 176.7 54.1 698 91-866 16-832 (1049)
28 2vgl_B AP-2 complex subunit be 99.8 1.7E-15 5.8E-20 170.2 41.0 442 4-543 50-501 (591)
29 2jdq_A Importin alpha-1 subuni 99.7 2.7E-16 9.2E-21 172.5 28.3 366 127-538 13-393 (450)
30 2z6g_A B-catenin; FULL-length, 99.7 2.2E-15 7.7E-20 174.4 35.7 524 94-681 117-666 (780)
31 2jdq_A Importin alpha-1 subuni 99.7 2.4E-16 8.3E-21 172.8 25.5 398 94-535 22-443 (450)
32 4b8j_A Importin subunit alpha- 99.7 1.6E-16 5.4E-21 177.7 20.8 414 369-834 76-508 (528)
33 4hat_C Exportin-1; heat repeat 99.7 3.8E-12 1.3E-16 149.5 56.3 680 17-744 114-910 (1023)
34 1wa5_B Importin alpha subunit; 99.7 9.9E-16 3.4E-20 171.0 24.7 400 94-536 89-511 (530)
35 2z6g_A B-catenin; FULL-length, 99.7 8.8E-15 3E-19 169.4 32.2 516 129-728 113-670 (780)
36 1wa5_B Importin alpha subunit; 99.7 4.6E-15 1.6E-19 165.6 25.6 402 175-635 88-509 (530)
37 1w63_A Adapter-related protein 99.7 2.8E-13 9.6E-18 152.6 39.7 508 11-635 42-576 (618)
38 1w63_A Adapter-related protein 99.7 1.3E-12 4.6E-17 147.0 45.0 484 100-725 42-544 (618)
39 2z6h_A Catenin beta-1, beta-ca 99.7 1.1E-13 3.9E-18 157.8 34.8 509 131-702 14-549 (644)
40 4b8j_A Importin subunit alpha- 99.6 2.1E-14 7.1E-19 160.4 27.1 404 176-636 76-496 (528)
41 3ibv_A Exportin-T; karyopherin 99.6 2E-12 6.8E-17 152.0 43.9 639 144-870 21-733 (980)
42 2z6h_A Catenin beta-1, beta-ca 99.6 1.8E-12 6E-17 148.0 37.5 467 8-538 19-530 (644)
43 1jdh_A Beta-catenin; beta-cate 99.6 6.3E-13 2.1E-17 148.9 33.0 468 8-533 22-528 (529)
44 1jdh_A Beta-catenin; beta-cate 99.6 3.5E-13 1.2E-17 151.0 30.8 499 130-719 16-528 (529)
45 2vgl_A Adaptor protein complex 99.6 5.1E-12 1.7E-16 141.5 38.4 489 93-676 75-587 (621)
46 3gjx_A Exportin-1; transport, 99.6 4.9E-09 1.7E-13 122.5 59.9 683 16-744 125-934 (1073)
47 2vgl_A Adaptor protein complex 99.5 4E-10 1.4E-14 126.2 48.3 460 130-725 73-554 (621)
48 2qk1_A Protein STU2; STU2P, XM 99.5 1.4E-13 4.7E-18 134.6 17.1 212 364-608 13-234 (249)
49 3tpo_A Importin subunit alpha- 99.5 7.3E-13 2.5E-17 147.0 23.0 406 368-822 77-496 (529)
50 3tpo_A Importin subunit alpha- 99.5 1.9E-12 6.3E-17 143.8 22.5 363 130-537 75-451 (529)
51 3ul1_B Importin subunit alpha- 99.5 5.8E-12 2E-16 138.8 24.9 405 176-634 59-476 (510)
52 3ul1_B Importin subunit alpha- 99.5 6.2E-11 2.1E-15 130.6 32.6 384 5-439 59-478 (510)
53 2qk2_A LP04448P; mini spindles 99.4 1.3E-12 4.4E-17 128.7 16.5 199 610-835 18-218 (242)
54 2qk2_A LP04448P; mini spindles 99.4 1.3E-12 4.5E-17 128.6 16.0 196 363-594 11-210 (242)
55 2qk1_A Protein STU2; STU2P, XM 99.4 9.7E-13 3.3E-17 128.6 12.4 205 612-835 21-233 (249)
56 3opb_A SWI5-dependent HO expre 99.2 1.6E-07 5.5E-12 103.4 41.9 580 130-808 131-763 (778)
57 3opb_A SWI5-dependent HO expre 99.2 6.3E-08 2.2E-12 106.6 37.9 540 93-704 133-761 (778)
58 1oyz_A Hypothetical protein YI 99.2 1.4E-09 4.8E-14 109.8 23.5 252 176-530 25-277 (280)
59 3a6p_A Exportin-5; exportin-5, 99.2 1.9E-07 6.4E-12 113.2 42.3 575 144-802 26-681 (1204)
60 4ady_A RPN2, 26S proteasome re 99.1 1.2E-06 4.2E-11 98.7 42.1 312 347-745 376-700 (963)
61 1oyz_A Hypothetical protein YI 99.1 1.9E-08 6.4E-13 101.5 23.1 251 39-391 25-277 (280)
62 1xm9_A Plakophilin 1; armadill 99.1 4.8E-09 1.6E-13 113.5 19.3 374 411-823 4-449 (457)
63 1xm9_A Plakophilin 1; armadill 99.0 2.4E-08 8.2E-13 108.0 24.2 359 133-536 4-450 (457)
64 4db8_A Armadillo-repeat protei 99.0 3.9E-09 1.3E-13 104.8 16.3 228 221-485 14-250 (252)
65 4hxt_A De novo protein OR329; 99.0 1.4E-08 4.8E-13 100.8 19.9 232 221-488 4-243 (252)
66 4hxt_A De novo protein OR329; 99.0 2.7E-08 9.3E-13 98.7 21.5 240 132-442 3-244 (252)
67 2iw3_A Elongation factor 3A; a 99.0 5.3E-08 1.8E-12 111.2 25.9 293 523-871 31-328 (986)
68 3l6x_A Catenin delta-1; cateni 99.0 1.5E-07 5E-12 102.3 28.3 370 127-536 43-477 (584)
69 3l6x_A Catenin delta-1; cateni 99.0 2E-07 7E-12 101.2 27.1 371 95-486 51-476 (584)
70 4db8_A Armadillo-repeat protei 98.9 1.2E-08 4E-13 101.3 15.4 231 176-439 14-251 (252)
71 3nmz_A APC variant protein; pr 98.9 1.1E-08 3.6E-13 108.6 15.7 324 364-727 71-456 (458)
72 3nmz_A APC variant protein; pr 98.9 5.5E-07 1.9E-11 95.5 27.0 314 132-487 71-451 (458)
73 2iw3_A Elongation factor 3A; a 98.9 4.5E-07 1.5E-11 103.6 27.4 302 93-441 15-326 (986)
74 3ltm_A Alpha-REP4; protein eng 98.8 4.7E-08 1.6E-12 93.8 15.4 188 174-442 19-206 (211)
75 3ltj_A Alpharep-4; protein eng 98.8 1.1E-07 3.8E-12 90.3 16.8 187 172-439 12-198 (201)
76 3ltm_A Alpha-REP4; protein eng 98.8 3.1E-07 1.1E-11 87.9 19.7 185 5-250 21-205 (211)
77 3ltj_A Alpharep-4; protein eng 98.8 4.4E-07 1.5E-11 86.1 19.8 181 5-246 16-196 (201)
78 2db0_A 253AA long hypothetical 98.7 2.9E-06 9.9E-11 73.1 20.6 213 130-393 31-243 (253)
79 4db6_A Armadillo repeat protei 98.7 2.1E-07 7.2E-12 89.1 15.2 195 91-289 11-209 (210)
80 2db0_A 253AA long hypothetical 98.7 1.1E-05 3.6E-10 69.7 22.0 214 218-485 31-245 (253)
81 1xqr_A HSPBP1 protein; armadil 98.6 1.2E-06 4.1E-11 87.3 18.6 179 425-638 55-240 (296)
82 4db6_A Armadillo repeat protei 98.6 7E-07 2.4E-11 85.4 15.3 192 218-439 11-209 (210)
83 3nmw_A APC variant protein; AR 98.5 4.8E-07 1.6E-11 92.9 12.6 265 425-726 47-339 (354)
84 1vsy_5 Proteasome activator BL 98.5 4.5E-05 1.5E-09 88.7 29.0 746 5-829 135-972 (997)
85 3tjz_B Coatomer subunit gamma; 98.5 1.3E-06 4.4E-11 88.3 13.9 317 90-481 24-348 (355)
86 1xqr_A HSPBP1 protein; armadil 98.5 3.7E-06 1.3E-10 83.8 16.5 210 24-251 13-241 (296)
87 4ady_A RPN2, 26S proteasome re 98.4 0.00012 4E-09 82.8 29.7 301 103-484 406-717 (963)
88 2of3_A ZYG-9; multifunctional 98.4 8.5E-06 2.9E-10 78.1 17.3 183 227-442 54-239 (266)
89 4ffb_C Protein STU2; tubulin f 98.4 7.9E-06 2.7E-10 81.7 16.5 181 342-540 22-217 (278)
90 3tjz_B Coatomer subunit gamma; 98.4 5.5E-06 1.9E-10 83.7 14.8 288 84-436 60-350 (355)
91 4ffb_C Protein STU2; tubulin f 98.3 3.8E-06 1.3E-10 84.0 13.4 199 372-642 14-218 (278)
92 3nmw_A APC variant protein; AR 98.3 0.00011 3.7E-09 75.4 23.8 269 146-442 47-337 (354)
93 2of3_A ZYG-9; multifunctional 98.3 1.4E-05 4.7E-10 76.7 15.7 190 616-835 55-248 (266)
94 3b2a_A TON_1937, putative unch 98.2 0.00087 3E-08 61.0 23.3 148 130-289 32-179 (265)
95 3b2a_A TON_1937, putative unch 98.1 0.00014 4.6E-09 66.2 16.8 187 36-249 32-219 (265)
96 3oc3_A Helicase MOT1, MOT1; re 98.1 3.1E-05 1.1E-09 79.6 13.0 222 37-288 174-403 (800)
97 4gmo_A Putative uncharacterize 98.1 0.00027 9.2E-09 80.2 22.1 158 367-538 35-217 (684)
98 1te4_A Conserved protein MTH18 98.0 3.1E-06 1.1E-10 73.4 3.8 121 364-532 9-130 (131)
99 1vsy_5 Proteasome activator BL 98.0 0.00023 7.9E-09 82.9 20.3 410 90-539 506-970 (997)
100 3oc3_A Helicase MOT1, MOT1; re 98.0 0.00054 1.9E-08 70.7 20.1 252 127-434 169-431 (800)
101 3grl_A General vesicular trans 97.9 0.012 4.1E-07 63.4 29.6 325 128-486 18-394 (651)
102 4gmo_A Putative uncharacterize 97.7 0.021 7E-07 64.8 29.0 155 132-291 36-216 (684)
103 1te4_A Conserved protein MTH18 97.6 0.0002 7E-09 61.7 8.1 104 343-483 26-130 (131)
104 3u0r_A Apoptosis inhibitor 5; 97.5 0.13 4.5E-06 52.8 28.5 186 50-269 39-224 (507)
105 3grl_A General vesicular trans 97.4 0.0033 1.1E-07 67.6 17.2 339 500-864 18-391 (651)
106 3u0r_A Apoptosis inhibitor 5; 97.1 0.06 2E-06 55.3 20.3 167 96-284 33-201 (507)
107 3tt9_A Plakophilin-2; cell adh 97.0 0.0028 9.7E-08 59.9 9.8 178 367-559 8-206 (233)
108 3tt9_A Plakophilin-2; cell adh 96.7 0.012 4E-07 55.7 11.7 193 322-535 10-229 (233)
109 3l9t_A Putative uncharacterize 96.6 0.072 2.4E-06 49.3 15.6 148 90-258 69-217 (240)
110 1vsy_4 Proteasome activator BL 96.4 1.9 6.5E-05 48.9 34.1 291 501-823 337-687 (799)
111 3fga_B Serine/threonine-protei 96.4 0.54 1.8E-05 47.8 21.4 266 378-681 95-369 (403)
112 3l9t_A Putative uncharacterize 96.3 0.32 1.1E-05 45.0 17.7 138 36-205 69-207 (240)
113 2npp_B PP2A, B subunit, serine 96.2 0.27 9.2E-06 50.9 18.9 263 378-678 128-399 (449)
114 3gs3_A Symplekin, LD45768P; he 96.0 0.92 3.2E-05 43.2 20.0 168 86-258 47-253 (257)
115 1lrv_A LRV, leucine-rich repea 95.7 0.01 3.5E-07 56.6 5.1 186 99-435 57-242 (244)
116 4atg_A TAF6; transcription, TF 95.6 0.15 5.3E-06 45.9 12.0 156 641-824 8-163 (196)
117 4atg_A TAF6; transcription, TF 95.3 0.16 5.6E-06 45.7 11.2 95 624-718 63-159 (196)
118 3o2t_A Symplekin; heat repeat, 95.2 1.5 5.1E-05 44.5 19.1 171 88-262 59-270 (386)
119 1w9c_A CRM1 protein, exportin 94.9 1.9 6.6E-05 42.2 18.5 122 601-724 67-199 (321)
120 1w9c_A CRM1 protein, exportin 93.7 5.6 0.00019 39.0 19.0 125 525-661 93-228 (321)
121 2npp_B PP2A, B subunit, serine 93.5 8.1 0.00028 40.0 23.3 232 93-360 163-401 (449)
122 3gs3_A Symplekin, LD45768P; he 93.3 5.7 0.00019 37.8 24.9 115 127-249 49-174 (257)
123 1vsy_4 Proteasome activator BL 92.7 16 0.00056 41.4 44.1 325 313-680 332-689 (799)
124 2jak_A Serine/threonine-protei 92.5 3 0.0001 42.2 15.1 217 378-632 140-363 (392)
125 3fga_B Serine/threonine-protei 91.9 12 0.00041 38.0 24.7 93 387-487 271-367 (403)
126 1lrv_A LRV, leucine-rich repea 91.9 0.048 1.6E-06 52.0 1.4 164 97-392 79-242 (244)
127 3dad_A FH1/FH2 domain-containi 91.7 9.1 0.00031 37.6 17.0 151 134-289 121-286 (339)
128 1upk_A MO25 protein; transfera 91.3 12 0.0004 36.8 24.6 189 93-289 79-283 (341)
129 1lsh_A Lipovitellin (LV-1N, LV 90.8 30 0.001 41.1 24.0 129 96-245 395-540 (1056)
130 1lsh_A Lipovitellin (LV-1N, LV 90.0 17 0.0006 43.1 21.1 84 380-486 491-576 (1056)
131 3o2t_A Symplekin; heat repeat, 89.6 19 0.00066 36.4 25.0 115 127-249 59-184 (386)
132 2jak_A Serine/threonine-protei 81.8 22 0.00075 36.0 13.6 178 5-200 176-362 (392)
133 1upk_A MO25 protein; transfera 78.5 53 0.0018 32.3 19.0 188 50-249 89-284 (341)
134 3dad_A FH1/FH2 domain-containi 76.8 60 0.002 31.9 17.8 149 96-251 122-289 (339)
135 1x5b_A Signal transducing adap 75.0 16 0.00053 32.0 9.1 77 606-682 51-129 (163)
136 3ldz_A STAM-1, signal transduc 72.8 23 0.0008 29.9 9.4 74 367-442 42-117 (140)
137 3g2s_A C-terminal fragment of 70.7 37 0.0013 28.9 10.2 77 606-682 47-130 (149)
138 1juq_A ADP-ribosylation factor 69.9 38 0.0013 29.8 10.4 77 606-682 49-132 (171)
139 3s4w_B Protein FACD2, fanconi 69.7 1.9E+02 0.0066 34.6 27.9 160 682-869 392-551 (1323)
140 1ho8_A Vacuolar ATP synthase s 69.2 92 0.0032 32.4 14.5 75 174-249 395-477 (480)
141 3ldz_A STAM-1, signal transduc 68.4 16 0.00053 31.0 7.3 75 175-251 43-117 (140)
142 1mhq_A ADP-ribosylation factor 68.2 29 0.001 29.6 9.0 77 606-682 37-120 (148)
143 3g2s_A C-terminal fragment of 67.3 36 0.0012 29.1 9.3 77 174-252 48-130 (149)
144 1juq_A ADP-ribosylation factor 66.4 31 0.0011 30.3 9.1 77 174-252 50-132 (171)
145 1vdy_A Hypothetical protein (R 66.1 24 0.00083 29.6 7.8 87 351-439 30-130 (140)
146 3jxy_A Alkylpurine DNA glycosy 65.3 88 0.003 29.1 14.2 153 17-205 41-195 (232)
147 1vdy_A Hypothetical protein (R 65.2 11 0.00038 31.6 5.6 87 116-204 32-129 (140)
148 1dvp_A HRS, hepatocyte growth 64.4 44 0.0015 30.9 10.3 77 606-682 41-119 (220)
149 3zyq_A Hepatocyte growth facto 63.9 43 0.0015 31.1 10.1 77 606-682 44-122 (226)
150 1mhq_A ADP-ribosylation factor 62.8 44 0.0015 28.5 9.1 75 176-252 40-120 (148)
151 1x5b_A Signal transducing adap 62.4 27 0.00092 30.4 7.9 76 174-251 52-128 (163)
152 3s4w_B Protein FACD2, fanconi 61.9 1.1E+02 0.0036 36.7 14.9 167 53-239 359-540 (1323)
153 2fv2_A RCD1 required for cell 57.8 1.2E+02 0.0043 28.3 16.5 139 149-290 74-225 (268)
154 2b6c_A Hypothetical protein EF 56.4 1.2E+02 0.0042 27.8 15.6 153 17-205 35-188 (220)
155 1sz9_A PCF11 protein; RNA poly 53.2 1E+02 0.0035 26.0 9.8 67 789-859 40-106 (144)
156 1ho8_A Vacuolar ATP synthase s 52.4 2.2E+02 0.0076 29.6 22.1 70 792-865 395-474 (480)
157 1t06_A Hypothetical protein; s 51.0 52 0.0018 30.8 8.4 73 366-442 107-183 (235)
158 3rru_A TOM1L1 protein; structu 45.0 48 0.0016 28.4 6.4 92 647-738 52-148 (152)
159 2b6c_A Hypothetical protein EF 44.0 76 0.0026 29.2 8.3 88 343-442 104-191 (220)
160 1elk_A Target of MYB1; superhe 43.9 1.5E+02 0.0053 25.4 10.0 75 367-442 53-133 (157)
161 1elk_A Target of MYB1; superhe 43.4 1.6E+02 0.0054 25.3 9.9 76 606-681 52-133 (157)
162 1dvp_A HRS, hepatocyte growth 41.3 1.1E+02 0.0036 28.3 8.8 73 792-866 42-114 (220)
163 3zyq_A Hepatocyte growth facto 40.4 1.3E+02 0.0043 27.9 9.1 73 792-866 45-117 (226)
164 1sz9_A PCF11 protein; RNA poly 40.2 1.7E+02 0.0057 24.7 9.0 76 128-206 40-115 (144)
165 3qml_C Protein SLS1, nucleotid 40.0 2.7E+02 0.0091 27.0 11.8 80 4-86 23-116 (315)
166 2fv2_A RCD1 required for cell 35.9 22 0.00074 33.3 3.0 71 793-865 102-172 (268)
167 4f52_E Glomulin; cullin-ring E 33.6 4.9E+02 0.017 28.2 14.0 109 132-248 318-431 (596)
168 3qml_C Protein SLS1, nucleotid 33.1 3.4E+02 0.012 26.2 13.4 154 662-831 83-255 (315)
169 4fu3_A Regulation of nuclear P 31.7 2.2E+02 0.0074 23.5 8.9 72 458-546 7-79 (135)
170 2qzg_A Conserved uncharacteriz 29.1 1.8E+02 0.0063 22.1 6.3 52 5-56 19-79 (94)
171 3ebb_A Phospholipase A2-activa 28.9 4.1E+02 0.014 25.8 16.4 173 347-534 83-262 (304)
172 2qsb_A UPF0147 protein TA0600; 28.5 1.9E+02 0.0065 21.7 7.0 53 5-57 15-76 (89)
173 3eg5_B Protein diaphanous homo 27.8 1.5E+02 0.0053 30.0 8.1 102 186-288 130-245 (383)
174 4fu3_A Regulation of nuclear P 26.0 2.8E+02 0.0094 22.8 10.9 68 218-285 38-112 (135)
No 1
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=5.3e-72 Score=671.01 Aligned_cols=843 Identities=33% Similarity=0.570 Sum_probs=722.0
Q ss_pred cHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhh
Q 039062 3 MEVTQVLLNA-QSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQR 81 (871)
Q Consensus 3 ~~l~~~l~~~-~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~ 81 (871)
+++.++|.++ +|||+++|++|+++|++++++++|+|+..|++++.+.+.+.++|++|+++||+.++++|+.........
T Consensus 4 ~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~ 83 (861)
T 2bpt_A 4 AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQR 83 (861)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHh
Confidence 5799999999 999999999999999999987889999999999998667899999999999999999999887777788
Q ss_pred ccC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCC-ChHHHHHHHHHHHHHh
Q 039062 82 WLS-LDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQL-PAHVKQATLETLGYLC 159 (871)
Q Consensus 82 ~~~-~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~-~~~~r~~al~~l~~l~ 159 (871)
|.. ++++.+..+|+.+++.|.++++.+|+.++++++.|++.++|.+.||++++.|.+.+.++ ++..|++++.+++.++
T Consensus 84 ~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~ 163 (861)
T 2bpt_A 84 WITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMC 163 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred HhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 997 99999999999999999999999999999999999999988569999999999999998 8999999999999999
Q ss_pred hccCCCc--cchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHH
Q 039062 160 EEVSPDV--VEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQ 237 (871)
Q Consensus 160 ~~~~~~~--~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 237 (871)
+...++. + ..+.+.+++.+...+.+++++..||.+|++++..++.+....+.....++.+++.+.+.++++++++|.
T Consensus 164 ~~~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~ 242 (861)
T 2bpt_A 164 ESADPQSQAL-VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQA 242 (861)
T ss_dssp HTSSTTSSTT-GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHH
T ss_pred HcCChhhhHH-HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHH
Confidence 9873332 4 578899999999999843338999999999999998776655443334567888888888889999999
Q ss_pred HHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHh
Q 039062 238 AAFECLVSISSTYYEKLAPYMQ-DIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQ 316 (871)
Q Consensus 238 ~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (871)
.+++++..+++.++..+.+++. .+++.++..+.+.+++++..|+++|..+++............ +.+...++++.++
T Consensus 243 ~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 320 (861)
T 2bpt_A 243 AAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQF--PQSPLQSYNFALS 320 (861)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTCSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhc--cCCchhhHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999988643221110000 0000002245667
Q ss_pred hhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhc
Q 039062 317 ALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILE 396 (871)
Q Consensus 317 ~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 396 (871)
+++.++|.++..|...++| +++++|++|.++..+++.++..+|+.+++.+++++.+.+++.+|+.|++++.+++.+++
T Consensus 321 ~~~~il~~ll~~l~~~~~d--~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 321 SIKDVVPNLLNLLTRQNED--PEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHHHHHTTCCCCC---CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHhcccc--cccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHc
Confidence 7788899999888764433 23456999999999999999999988999999999999999999999999999999999
Q ss_pred CCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCChHHHHH
Q 039062 397 GPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEK 476 (871)
Q Consensus 397 ~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~ 476 (871)
++.++.+.++++.+++.++..+ .|+++.||.+++|++|+++...+.. .....+++.++|.+++.+.++++|+..
T Consensus 399 ~~~~~~~~~~l~~il~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~~~~~l~~l~~~l~~~~~v~~~ 472 (861)
T 2bpt_A 399 GPDKVQRTYYVHQALPSILNLM-NDQSLQVKETTAWCIGRIADSVAES-----IDPQQHLPGVVQACLIGLQDHPKVATN 472 (861)
T ss_dssp SSCHHHHHHHHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHGGG-----SCTTTTHHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHhhhh-----cCCHHHHHHHHHHHHHHhccChHHHHH
Confidence 8755677889999999999999 9999999999999999999988521 123568999999999999988999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 039062 477 ACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMEL 556 (871)
Q Consensus 477 a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l 556 (871)
+|+++..+++.+.+ ..++.+.||++.+++.++..+.+.+. +.++|..++.+++.++...+..+.+++..++|.+++.+
T Consensus 473 a~~al~~l~~~~~~-~~~~~l~~~~~~il~~L~~~l~~~d~-~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l 550 (861)
T 2bpt_A 473 CSWTIINLVEQLAE-ATPSPIYNFYPALVDGLIGAANRIDN-EFNARASAFSALTTMVEYATDTVAETSASISTFVMDKL 550 (861)
T ss_dssp HHHHHHHHHHHHSS-SSSCGGGGGHHHHHHHHHHHHTCSCC-GGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc-ccchhhHHHHHHHHHHHHHHHhCcCc-chHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHH
Confidence 99999999987642 11467889999999999999986553 46899999999999999999989999999999999999
Q ss_pred HHhhhc--cCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCc-chhhhHHHHHHH
Q 039062 557 HKTLEG--QKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSA-TVHEEAMLAIGA 633 (871)
Q Consensus 557 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~~~~~a~~~l~~ 633 (871)
...... +..+.++.+....++..++.+++.++..++.. +.++.+.+++.++..+++.+. .+|+.++.+++.
T Consensus 551 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~------~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~ 624 (861)
T 2bpt_A 551 GQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS------VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISA 624 (861)
T ss_dssp HHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG------TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHH
T ss_pred HHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHH
Confidence 865211 11122333344567888999999999999876 889999999999999998776 899999999999
Q ss_pred HHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHH
Q 039062 634 LAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIF 713 (871)
Q Consensus 634 l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~ 713 (871)
++...|..+.+|++.++|.+...+.+ +++.+|..++.+++.+++.+++.+.+|++.+++.+++.+.+++.+.++|..++
T Consensus 625 l~~~~~~~~~~~l~~i~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~ 703 (861)
T 2bpt_A 625 LAASLGKGFEKYLETFSPYLLKALNQ-VDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVL 703 (861)
T ss_dssp HHHHHGGGGHHHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHH
Confidence 99999999999999999999999964 45589999999999999999999999999999999999987644578999999
Q ss_pred HHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHH
Q 039062 714 SCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHI 793 (871)
Q Consensus 714 ~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i 793 (871)
.+++.++..+|..|.||++.++|.+.+.+....+. +|+|+.++...+|.++++++..++..++.. ...+.+|++.+
T Consensus 704 ~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~--~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~--~~~~~~~~~~i 779 (861)
T 2bpt_A 704 SVFGDIASNIGADFIPYLNDIMALCVAAQNTKPEN--GTLEALDYQIKVLEAVLDAYVGIVAGLHDK--PEALFPYVGTI 779 (861)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSS--SSHHHHHHHHHHHHHHHHHHHHHHHHTTTC--HHHHGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHH
Confidence 99999999999999999999999999988764322 355556677899999999999999887643 35689999999
Q ss_pred HHHHHHHhcCCC-C-CHHHHHHHHHHHHHHHhHh-cccccccccchHHHHHHHHHHH--cCCChhhHHHHHHHHHHHHHH
Q 039062 794 LQFLDSMYMEKD-M-DELVMKTAIGLLGDLADTL-GSNAGSLIQQSLTSKDFLNECL--SSKDHMIKESAEWARLAINKA 868 (871)
Q Consensus 794 ~~~l~~~~~~~~-~-~~~~r~~a~~~l~~i~~~~-~~~~~~~l~~~~~v~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~ 868 (871)
++.+...+.|.+ . ++++|..|+.+++++++.+ |+.+.+|+++. ++..+++.+. .+.+.+++++|.||++++.+.
T Consensus 780 ~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~ 858 (861)
T 2bpt_A 780 FQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQD-WVIDYIKRTRSGQLFSQATKDTARWAREQQKRQ 858 (861)
T ss_dssp HHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCH-HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcH-HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 999988886521 1 7899999999999999999 88999999943 7899999998 467789999999999999987
Q ss_pred hc
Q 039062 869 IS 870 (871)
Q Consensus 869 ~~ 870 (871)
++
T Consensus 859 ~~ 860 (861)
T 2bpt_A 859 LS 860 (861)
T ss_dssp HT
T ss_pred hC
Confidence 76
No 2
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=3.2e-69 Score=648.11 Aligned_cols=847 Identities=41% Similarity=0.686 Sum_probs=712.3
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhc
Q 039062 3 MEVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRW 82 (871)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~ 82 (871)
|++.++|+.++|+|+++|++|+++|++++.+++++|+..|++++.+++.+..+|++|+++||+.+...|..........|
T Consensus 1 ~~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w 80 (876)
T 1qgr_A 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (876)
T ss_dssp CCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhh
Confidence 47999999999999999999999999999877899999999999986678999999999999999888776666666789
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCC--ChHHHHHHHHHHHHHhh
Q 039062 83 LSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQL--PAHVKQATLETLGYLCE 160 (871)
Q Consensus 83 ~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~--~~~~r~~al~~l~~l~~ 160 (871)
..++++.+..+|+.+++.|.++++.+ +.++++++.+++.++|...||++++.+.+.+.++ ++.+|++++.++..+++
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 81 LAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp HTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888 9999999999999888679999999999999998 88999999999999998
Q ss_pred ccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHH
Q 039062 161 EVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAF 240 (871)
Q Consensus 161 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~ 240 (871)
...++.+ ..+.+.+++.+.+.+.+++++..+|..|++++..++.+.+..+......+.+++.+.+.+.++++++|..++
T Consensus 160 ~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~ 238 (876)
T 1qgr_A 160 DIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238 (876)
T ss_dssp HSCHHHH-GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred hcCHhhH-HhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 7644445 678899999999999853348999999999999998776544433333456888888888888999999999
Q ss_pred HHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhc-CCCCCCCC-CchhhhHHhh
Q 039062 241 ECLVSISSTYYEKLAPYMQ-DIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYG-SDFTGNSD-IPCFYFIKQA 317 (871)
Q Consensus 241 ~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~ 317 (871)
+++..++..++..+.+++. .+++.++..+.+.+++++..|+++|..+++....+..+.. ...++... .+...+.+..
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (876)
T 1qgr_A 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (876)
T ss_dssp HHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHH
Confidence 9999999999999999999 9999999999999999999999999999886532211000 00000000 1123456666
Q ss_pred hhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcC
Q 039062 318 LPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEG 397 (871)
Q Consensus 318 ~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 397 (871)
++.++|.+++.+...++|+ ++++|++|.+|..+++.++..+|+.+++.+++++...+.+++|++|++++.+++.++++
T Consensus 319 ~~~ll~~ll~~l~~~~~d~--~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~ 396 (876)
T 1qgr_A 319 LQYLVPILTQTLTKQDEND--DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (876)
T ss_dssp HHHHHHHHHHHTTCCCSSC--CTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHHHhHHHHHHhhcccccc--cccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcC
Confidence 7888898888887554332 34569999999999999999999888999999999999999999999999999999998
Q ss_pred CChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCChHHHHHH
Q 039062 398 PSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKA 477 (871)
Q Consensus 398 ~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a 477 (871)
+.++.+.++++.++|.++..+ +|+++.||.+|+++++++++..+.. .....+++.+++.++..+.++++|+..+
T Consensus 397 ~~~~~~~~~~~~~l~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~-----~~~~~~l~~~l~~l~~~l~~~~~v~~~a 470 (876)
T 1qgr_A 397 PEPSQLKPLVIQAMPTLIELM-KDPSVVVRDTAAWTVGRICELLPEA-----AINDVYLAPLLQCLIEGLSAEPRVASNV 470 (876)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCGGG-----TSSTTTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhCchh-----cccHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 754667788999999999999 9999999999999999999987531 1145789999999999999889999999
Q ss_pred HHHHHHHHhhccc-------C--CCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 039062 478 CGALYFLAQGYED-------V--GPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQL 548 (871)
Q Consensus 478 ~~~l~~l~~~~~~-------~--~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l 548 (871)
++++..+++.+.+ . ...+.+.||++.+++.+...+.+.+..+..+|..++++++.++...+....+++..+
T Consensus 471 ~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l 550 (876)
T 1qgr_A 471 CWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKT 550 (876)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHH
Confidence 9999999987641 1 124568999999999999998875422457899999999999999999999999999
Q ss_pred HHHHHHHHHHhhh--ccCCChhhHHHHHHHHHHHHHHHHHHHHHhC-CCCCchhhhhhhHHHHHHHHHHHHcccC--cch
Q 039062 549 VPVIMMELHKTLE--GQKLSSDEREKQGELQGLLCGCLQVIIQKLG-SSEPTKYVFMQYADQIMGLFLRVFACRS--ATV 623 (871)
Q Consensus 549 l~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~ 623 (871)
+|.+++.+..... ....+.+|+...++++..++.+++.++..++ .. +.+|.+.+++.++..+++.. ..+
T Consensus 551 ~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~------~~~~~~~l~~~l~~~l~~~~~~~~v 624 (876)
T 1qgr_A 551 TLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD------ALQISDVVMASLLRMFQSTAGSGGV 624 (876)
T ss_dssp HHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH------HHTTHHHHHHHHHHHC-----CCHH
T ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhh------hhHHHHHHHHHHHHHHHhccCCCCc
Confidence 9999999987522 1111345555556778889999999998887 55 88999999999999998864 468
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCC
Q 039062 624 HEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQ 703 (871)
Q Consensus 624 ~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 703 (871)
++.++.+++.++...|..+.+|++.++|.+...+.+.++..+|..++.+++.+++.++..+.+|++.+++.+++.+++++
T Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 704 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNEN 704 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTT
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999998765678999999999999999999999999999999999998743
Q ss_pred CCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCC---
Q 039062 704 LHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNS--- 780 (871)
Q Consensus 704 ~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~--- 780 (871)
.+.++|..++.++|.++..+|..|.+|++.++|.+.+.+....+ .+|+|..+|...+|..+++++..+++.++..
T Consensus 705 ~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~--~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~ 782 (876)
T 1qgr_A 705 VHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVD--KSDYDMVDYLNELRESCLEAYTGIVQGLKGDQEN 782 (876)
T ss_dssp SCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred ccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHccCccc
Confidence 35779999999999999999999999999999999988865422 2356666777899999999999999987642
Q ss_pred --ccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcc-cccccccchHHHHHHHHHHHcCCChhhHHH
Q 039062 781 --PKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGS-NAGSLIQQSLTSKDFLNECLSSKDHMIKES 857 (871)
Q Consensus 781 --~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~-~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~ 857 (871)
+....+.||++.+++.+.....+++.+.++|..|+.++|+++..+|. .+.+|+.+. ++.+++..+.++.+..+|++
T Consensus 783 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~i~~ll~~~l~~~~~~~r~~ 861 (876)
T 1qgr_A 783 VHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARP-MIHELLTEGRRSKTNKAKTL 861 (876)
T ss_dssp CCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSH-HHHHHHHHHHHCSCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcH-HHHHHHHHHhhcCCHhHHHH
Confidence 11257889999999988887765333789999999999999999999 899996543 79999996666789999999
Q ss_pred HHHHHHHHHHH
Q 039062 858 AEWARLAINKA 868 (871)
Q Consensus 858 ~~~~~~~~~~~ 868 (871)
|.||+++|.+.
T Consensus 862 a~~a~~~~~~~ 872 (876)
T 1qgr_A 862 ARWATKELRKL 872 (876)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=3.6e-64 Score=597.39 Aligned_cols=742 Identities=19% Similarity=0.315 Sum_probs=633.3
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhC-CCCChhHHHHHHHHHHcccccchhhhHHHHhhh
Q 039062 3 MEVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELAN-DDKPVDSRKLAGLILKNALDAKEQHRKFELVQR 81 (871)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~-~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~ 81 (871)
+++.++|++++|||+++|++||++|++++.+ |+|..+|..++.+ .+.+..+|++|++.|||.+++ .
T Consensus 13 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~--p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~-----------~ 79 (852)
T 4fdd_A 13 QQILQLLKESQSPDTTIQRTVQQKLEQLNQY--PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKA-----------H 79 (852)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTT-----------S
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHhC--CCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH-----------c
Confidence 3689999999999999999999999999887 9999999999985 477899999999999999975 5
Q ss_pred ccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhc
Q 039062 82 WLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEE 161 (871)
Q Consensus 82 ~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~ 161 (871)
|..++++.+..+|+.+++.|.++++.+|+.++.+++.|++.+++ ..||++++.|.+.+.++++..|++++.+++.+++.
T Consensus 80 w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~ 158 (852)
T 4fdd_A 80 FQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICED 158 (852)
T ss_dssp GGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 66799999999999999999999999999999999999999866 79999999999999999999999999999999998
Q ss_pred cCCCccc----hhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHH
Q 039062 162 VSPDVVE----QDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQ 237 (871)
Q Consensus 162 ~~~~~~~----~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 237 (871)
. ++.+. ...+..+++.+++.+. ++++.+|..|++++..++...+..+ ....+.+++.++..++++++++|.
T Consensus 159 ~-~~~~~~~~~~~~~~~il~~l~~~l~--~~~~~vR~~A~~aL~~~~~~~~~~~--~~~~~~~l~~l~~~~~d~~~~vr~ 233 (852)
T 4fdd_A 159 S-AEILDSDVLDRPLNIMIPKFLQFFK--HSSPKIRSHAVACVNQFIISRTQAL--MLHIDSFIENLFALAGDEEPEVRK 233 (852)
T ss_dssp H-TTHHHHCSSSSCHHHHHHHHTTTTT--CSSHHHHHHHHHHHHTTTTTTCHHH--HTSHHHHHHHHHHHHTCCCHHHHH
T ss_pred h-HHHhchhhhcchHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhcccHHH--HHHHHHHHHHHHHHcCCCCHHHHH
Confidence 8 55442 2347889999999998 8899999999999998775432211 112367888899999999999999
Q ss_pred HHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhh
Q 039062 238 AAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQA 317 (871)
Q Consensus 238 ~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (871)
.++++|..+++.++..+.+|++.+++.++..+.+.++++|..|+++|..+++.. ..+++.+++
T Consensus 234 ~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~-----------------~~~~~~~~~ 296 (852)
T 4fdd_A 234 NVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP-----------------ICKDVLVRH 296 (852)
T ss_dssp HHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST-----------------THHHHHTTT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch-----------------hHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998642 023456777
Q ss_pred hhhhHHHHHHHHhcc---------c--CCccccc--ccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhH
Q 039062 318 LPALVPLLLEILLKQ---------E--EDQDQEE--GAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQR 384 (871)
Q Consensus 318 ~~~l~~~l~~~l~~~---------~--~d~~~~~--~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r 384 (871)
++.++|.++..+.+. + +|+++|+ ..|++|++|..+++.++...|+.+++.+++++.+.+.+++|++|
T Consensus 297 ~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R 376 (852)
T 4fdd_A 297 LPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVK 376 (852)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHH
Confidence 888899988887422 1 2221111 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHH
Q 039062 385 EAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLL 464 (871)
Q Consensus 385 ~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~ 464 (871)
++|+.+++.+++++. +.+.++++.+++.++..+ +|+++.||.+++|++|+++++... .....++..+++.++
T Consensus 377 ~aa~~alg~i~~~~~-~~~~~~l~~~l~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~------~~~~~~~~~ll~~L~ 448 (852)
T 4fdd_A 377 ESGILVLGAIAEGCM-QGMIPYLPELIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVS------QPPDTYLKPLMTELL 448 (852)
T ss_dssp HHHHHHHHHTTTTTH-HHHGGGHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTHHHHHH------SCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhcc------chHHHHHHHHHHHHH
Confidence 999999999999984 677788999999999999 999999999999999999998753 234678999999999
Q ss_pred HhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCc--
Q 039062 465 QSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDET-- 541 (871)
Q Consensus 465 ~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~-- 541 (871)
+.+.| +++||..|+++|.++++.+. ..+.||++.+++.+...+++.+. .....++++++.++...+..+
T Consensus 449 ~~L~d~~~~vr~~a~~aL~~l~~~~~-----~~l~~~l~~ll~~L~~~l~~~~~---~~~~~~~~ai~~l~~~~~~~~~~ 520 (852)
T 4fdd_A 449 KRILDSNKRVQEAACSAFATLEEEAC-----TELVPYLAYILDTLVFAFSKYQH---KNLLILYDAIGTLADSVGHHLNK 520 (852)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHG-----GGGGGGHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHGGGGCC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhh-----HhhHhHHHHHHHHHHHHHHHhCh---HHHHHHHHHHHHHHHHhhhhhcc
Confidence 99987 78999999999999998764 34889999999999999987652 344568999999998888543
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHccc--
Q 039062 542 APMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACR-- 619 (871)
Q Consensus 542 ~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-- 619 (871)
.+|++.++|.+++.|+... ++++. ++ .+++|++.++..+|.. +.+|++++++.++..+...
T Consensus 521 ~~~~~~l~p~l~~~~~~l~------d~~~~----~~-~~~~~l~~i~~~~g~~------~~~~~~~i~~~~~~~l~~~l~ 583 (852)
T 4fdd_A 521 PEYIQMLMPPLIQKWNMLK------DEDKD----LF-PLLECLSSVATALQSG------FLPYCEPVYQRCVNLVQKTLA 583 (852)
T ss_dssp HHHHHHHHHHHHHHHHHSC------TTCTT----HH-HHHHHHHHHHHHHGGG------GHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc------cccHH----HH-HHHHHHHHHHHHHhHh------HHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999886532 22222 32 5899999999999987 8999999888777776531
Q ss_pred ---------------CcchhhhHHHHHHHHHHHhhhhhhhhh--HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhh
Q 039062 620 ---------------SATVHEEAMLAIGALAYAAGLDFAKYM--PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEE 682 (871)
Q Consensus 620 ---------------~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 682 (871)
+.+++..++.+++.++..+|..+.+|+ +.+++.+...+.+. ...+|..++.+++++++.++.
T Consensus 584 ~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~ 662 (852)
T 4fdd_A 584 QAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQ 662 (852)
T ss_dssp HHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHHhhH
Confidence 345788899999999999999999998 78999999999765 468999999999999999999
Q ss_pred cccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q 039062 683 KILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSL 762 (871)
Q Consensus 683 ~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~ 762 (871)
.+.+|++.+++.+.+.+... ..++|..+++++|.++...|+.+.||++.+++.+.+.+... + ....+
T Consensus 663 ~~~~~l~~~lp~l~~~l~~~--~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~------~-----~~~~~ 729 (852)
T 4fdd_A 663 HVKPCIADFMPILGTNLNPE--FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRP------N-----TPKTL 729 (852)
T ss_dssp GTGGGHHHHHHHHHHTCCTT--SHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCS------S-----CCHHH
T ss_pred HHHHHHHHHHHHHHHHcCcc--chHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCC------C-----CCchH
Confidence 99999999999999999665 57889999999999999999999999999999999999753 1 12578
Q ss_pred HHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccc
Q 039062 763 RNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLI 833 (871)
Q Consensus 763 r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l 833 (871)
+++++.+++.+... .+..+.||++++++.++..+.+. .+.+.|..++..++.+....|+...+.+
T Consensus 730 ~~~a~~~igrl~~~-----~~~~~~~~l~~~~~~~~~~l~~~-~d~~e~~~a~~~l~~li~~~p~~~~~~~ 794 (852)
T 4fdd_A 730 LENTAITIGRLGYV-----CPQEVAPMLQQFIRPWCTSLRNI-RDNEEKDSAFRGICTMISVNPSGVIQDF 794 (852)
T ss_dssp HHHHHHHHHHHHHH-----CHHHHGGGHHHHHHHHHHHHHTS-CSSHHHHHHHHHHHHHHHHCGGGTGGGH
T ss_pred HHHHHHHHHHHHHh-----CHHHhCccHHHHHHHHHHHhccc-cccHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 99999999999887 24457799999999999988753 4566799999999999999887655444
No 4
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=2.1e-47 Score=457.10 Aligned_cols=681 Identities=14% Similarity=0.142 Sum_probs=507.6
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhc
Q 039062 3 MEVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRW 82 (871)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~ 82 (871)
+++.++|.+++|||++.| ||++|++++.+ |+|+..|++++.+++.+.++|++|+++|||.++++|.... ..
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~--p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~-----~~ 75 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLETQ--DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN-----GN 75 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHHTS--TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS-----SC
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhhcC--CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcc-----cC
Confidence 479999999999999999 99999999877 8999999999988778899999999999999987765321 11
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcc
Q 039062 83 LSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEV 162 (871)
Q Consensus 83 ~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~ 162 (871)
..++++.+..||+.++..+.++++.+|++++.+++.|++.++| +.||++++.|++.+++++...+++++.++..+++..
T Consensus 76 ~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 76 HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp BSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999988899999999999999999999 799999999999999988889999999999999976
Q ss_pred CCCccc------------hhhHHHHHH---HHHhhhcCCCCC-------HHHHHHHHHHHHHhhhcchhcccChhhHHHH
Q 039062 163 SPDVVE------------QDHVNKILT---AVVQGMNASEMN-------NDVRLAATRALYNALSFAQANFSNDMERDYI 220 (871)
Q Consensus 163 ~~~~~~------------~~~~~~i~~---~l~~~l~~~~~~-------~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i 220 (871)
...+. ....+.+++ .+.+.+.++..+ ..++..+++++..+....-..+. ......+
T Consensus 155 -~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~-~~~~~~~ 232 (960)
T 1wa5_C 155 -RPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFF-EDNIQVG 232 (960)
T ss_dssp -TTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHH-HHTHHHH
T ss_pred -HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHH-HHHHHHH
Confidence 32110 111222222 223335532222 23344567777664422111111 1112334
Q ss_pred HHHHHHhhcc------Cc---------HHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhh-----CCChhHHHHH
Q 039062 221 MRVVCEATQS------AE---------LKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVR-----EDEEPVALQA 280 (871)
Q Consensus 221 ~~~l~~~l~~------~~---------~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~a 280 (871)
++.+.+.+.. .+ +.+++.+++++..+++.+++.+.++++.+++.++..+. ..++.++..+
T Consensus 233 ~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a 312 (960)
T 1wa5_C 233 MGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKS 312 (960)
T ss_dssp HHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHH
T ss_pred HHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHH
Confidence 4444443321 11 35789999999999999999999999999999998875 3566899999
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHH--hhhhhhH-HHHHHHHhcccCCc-------c-------cccccc
Q 039062 281 IEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIK--QALPALV-PLLLEILLKQEEDQ-------D-------QEEGAW 343 (871)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~-~~l~~~l~~~~~d~-------~-------~~~~~~ 343 (871)
++||..+++.... ...++ ++++.++ +.++..|...++|. + ++++.|
T Consensus 313 l~fl~~~~~~~~~-----------------~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~ 375 (960)
T 1wa5_C 313 LSFLTAVTRIPKY-----------------FEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTD 375 (960)
T ss_dssp HHHHHHHHTSHHH-----------------HGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----
T ss_pred HHHHHHHhCcHhH-----------------HHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCccccc
Confidence 9999998764311 12222 5666677 66777776433221 0 124557
Q ss_pred cHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhc------CCChhhHHHHHHHHHHhhcCCC-hh-hhhH-----HHHH-
Q 039062 344 NIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIA------KPDWRQREAATYAFGSILEGPS-PD-KLLH-----IVNV- 409 (871)
Q Consensus 344 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~~a~~~l~~l~~~~~-~~-~~~~-----~l~~- 409 (871)
++|++|..+|+.++..+|+.+++.+++++.+.++ +++|+.|++|++++++++++.. .+ .... .+..
T Consensus 376 s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~ 455 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF 455 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH
T ss_pred CcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHH
Confidence 9999999999999999998889999999888776 6889999999999999987521 11 1110 2222
Q ss_pred HHHHHHHHccCCC---cHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHH
Q 039062 410 ALSFMLSALTKDP---NNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLA 485 (871)
Q Consensus 410 i~~~l~~~l~~d~---~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~ 485 (871)
+...+++.+ .|+ +|.||.+++|++|++++++. +.++..+++.+++.+.| ++.|+.+||++|.+|+
T Consensus 456 l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~~----------~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 456 FTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQLT----------KAQLIELMPILATFLQTDEYVVYTYAAITIEKIL 524 (960)
T ss_dssp HHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGSC----------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhCC----------HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 345567777 777 99999999999999998763 46899999999999987 6899999999999998
Q ss_pred hhcc------cCCCCCCCcchHHHHHHHHHHhhccCC--hhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 039062 486 QGYE------DVGPSSPLTPFFQEIVQSLLTVTHRED--AGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELH 557 (871)
Q Consensus 486 ~~~~------~~~~~~~l~~~~~~il~~l~~~l~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~ 557 (871)
+... .....+.+.||++++++.++..++... .......+.++.+++.++...++.+.||+..+++.+.+.+.
T Consensus 525 ~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~ 604 (960)
T 1wa5_C 525 TIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVT 604 (960)
T ss_dssp TCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHH
T ss_pred hcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7532 111246789999999999999987641 00112346899999999999999999999999999999998
Q ss_pred HhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHH
Q 039062 558 KTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYA 637 (871)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 637 (871)
.... +.+++ .++..++++++.++...+++ .+.++.+.+++.+...++....+..++++..++.++..
T Consensus 605 ~~~~----~~~~~----~~~~~~~e~l~~l~~~~~~~-----~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 605 IMAK----NPSNP----RFTHYTFESIGAILNYTQRQ-----NLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHTT----SCCCH----HHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHHh----CCCCc----HHHHHHHHHHHHHHhcCCcc-----hHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 7532 12232 34566899999998874432 37788899999999999887777899999999999988
Q ss_pred hhhhhhhhhHhHHHHHH--hhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHH
Q 039062 638 AGLDFAKYMPDFYKYLE--MGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSC 715 (871)
Q Consensus 638 ~~~~~~~~l~~i~~~l~--~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~ 715 (871)
. ..+.+++..++|.+. ..+++. ......+.++..+....++.+.. +..++..+.+.+.+. . .+..++.+
T Consensus 672 ~-~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~--~--~~~~a~~l 742 (960)
T 1wa5_C 672 S-ATIPESIKPLAQPLLAPNVWELK---GNIPAVTRLLKSFIKTDSSIFPD-LVPVLGIFQRLIASK--A--YEVHGFDL 742 (960)
T ss_dssp C-SSCCTTTGGGHHHHTSGGGGCCT---TTHHHHHHHHHHHHHHHGGGCSC-SHHHHHHHHHHHTCT--T--THHHHHHH
T ss_pred c-cCCCHHHHHHHHHHcCHHHhcCC---CCchhHHHHHHHHHHhChHHHHH-HHHHHHHHHHHhCCC--c--ccchHHHH
Confidence 7 778899999999998 766544 23345566677776665554443 344555555555443 1 34789999
Q ss_pred HHHHHHhhccC-hHHhHHHHHHHHHHHHhhc
Q 039062 716 FGDIALAIGEN-FEKYLMYAMPMLQSAADLS 745 (871)
Q Consensus 716 l~~i~~~~~~~-~~~~~~~i~~~l~~~l~~~ 745 (871)
++.++..+|.. |.||++.+++.+.+.+...
T Consensus 743 l~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~ 773 (960)
T 1wa5_C 743 LEHIMLLIDMNRLRPYIKQIAVLLLQRLQNS 773 (960)
T ss_dssp HHHHHHHSCHHHHGGGHHHHHHHHHHGGGSS
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999988 9999999999999988653
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=3.8e-43 Score=423.73 Aligned_cols=758 Identities=13% Similarity=0.144 Sum_probs=550.9
Q ss_pred cHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhh
Q 039062 3 MEVTQVLLN-AQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQR 81 (871)
Q Consensus 3 ~~l~~~l~~-~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~ 81 (871)
+++.++++. ..++|++.|++|+++|++++++ |+++..+..++.+ +.+.++|++|+++||+.+++ .
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~--p~~~~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~-----------~ 89 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQVS--PQAWHFSWQLLQP-DKVPEIQYFGASALHIKISR-----------Y 89 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS--TTHHHHHHHHTST-TSCHHHHHHHHHHHHHHHHH-----------C
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHh-----------C
Confidence 358889988 5679999999999999999998 8999999998876 67899999999999999974 5
Q ss_pred ccCCCHHHHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcC-----CChHHHHHHHH
Q 039062 82 WLSLDANVKTQIKTCLLNTLTS---TVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQ-----LPAHVKQATLE 153 (871)
Q Consensus 82 ~~~~~~~~~~~i~~~ll~~l~~---~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~-----~~~~~r~~al~ 153 (871)
|..++++.+..+|+.+++.+.+ ..+.||++++.+++.|++.+|| ..||++++.|.+.+++ +++..+..++.
T Consensus 90 w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p-~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 168 (963)
T 2x19_B 90 WSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMP-DAWPCAVADMVRLFQAEDSPVDGQGRCLALLE 168 (963)
T ss_dssp GGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHCC------CHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCc-cccchHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 7789999999999999999876 3489999999999999999999 6799999999999876 36668899999
Q ss_pred HHHHHhhccC------------CCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhccc---------
Q 039062 154 TLGYLCEEVS------------PDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFS--------- 212 (871)
Q Consensus 154 ~l~~l~~~~~------------~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~--------- 212 (871)
+|..++++.. .+.+ ..+++.+++.+...+...+.+..++..+++|+..++.. +....
T Consensus 169 iL~~l~ee~~~~~~~~~~r~~~~~~l-~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~-~~~~~~~~~ll~~l 246 (963)
T 2x19_B 169 LLTVLPEEFQTSRLPQYRKGLVRTSL-AVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQL-EVPLQDCEALIQAA 246 (963)
T ss_dssp HHHHHHHHHTTCCC---------CCS-GGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTS-SCCGGGTHHHHHHH
T ss_pred HHHhCHHHHhcccCcHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcC-CCCcccchHHHHHH
Confidence 9999987541 1122 35677788777777764333335777788888665531 11000
Q ss_pred -----C-----------------------hhhHHHHHHHHHH-------hhccCcHHHHHHHHHHHHHHHHHhHHhhH--
Q 039062 213 -----N-----------------------DMERDYIMRVVCE-------ATQSAELKIRQAAFECLVSISSTYYEKLA-- 255 (871)
Q Consensus 213 -----~-----------------------~~~~~~i~~~l~~-------~l~~~~~~~~~~a~~~l~~l~~~~~~~~~-- 255 (871)
. ......+++.+.. .....|.+.....++.+..+++.++..+.
T Consensus 247 ~~~l~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~ 326 (963)
T 2x19_B 247 FAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQ 326 (963)
T ss_dssp HHHTTSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcC
Confidence 0 0001111221111 12334556667777888888777666554
Q ss_pred ----HhHHHHHHHHHHHhhC-----CChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHH
Q 039062 256 ----PYMQDIYSITAKAVRE-----DEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLL 326 (871)
Q Consensus 256 ----~~~~~l~~~~~~~~~~-----~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 326 (871)
+++..++++++..... .++++...+++||..+++....+..+. ........+++++.+++.++
T Consensus 327 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~--------~~~~~~~~~~~l~~l~~~ll 398 (963)
T 2x19_B 327 VEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEK--------QAVYQQVYRPVYFQLVDVLL 398 (963)
T ss_dssp GGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhh--------hHHHHHHHHHHHHHHHHHHH
Confidence 5566778877777664 466788899999999988432110000 00023456788888999999
Q ss_pred HHHhcccCCc-----ccccccc-cHhHHHHHHHHHHHHHcCCCcccchHHHHHhhh----cCCChhhHHHHHHHHHHhhc
Q 039062 327 EILLKQEEDQ-----DQEEGAW-NIAMAGGTCLGLVARTVGDDIVPLVIPFIEENI----AKPDWRQREAATYAFGSILE 396 (871)
Q Consensus 327 ~~l~~~~~d~-----~~~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l----~~~~~~~r~~a~~~l~~l~~ 396 (871)
..+.+.++++ +||++.| +.|+++.++|..++...|+.+++.+.+.+...+ ++.+|+.|++++++++++++
T Consensus 399 ~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~ 478 (963)
T 2x19_B 399 HKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAE 478 (963)
T ss_dssp HHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHh
Confidence 9886543321 1222345 568889999999999999888888888888887 67899999999999999999
Q ss_pred CCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCChHHHHH
Q 039062 397 GPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEK 476 (871)
Q Consensus 397 ~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~ 476 (871)
++. +...++++.+++. +..+ .++++.||.+++|++|++++++.. ...+++.+++.++..+.+ ++|+..
T Consensus 479 ~~~-~~~~~~l~~l~~~-l~~l-~~~~~~vr~~~~~~l~~~~~~l~~--------~~~~l~~vl~~l~~~l~~-~~V~~~ 546 (963)
T 2x19_B 479 TID-VNYSDVVPGLIGL-IPRI-SISNVQLADTVMFTIGALSEWLAD--------HPVMINSVLPLVLHALGN-PELSVS 546 (963)
T ss_dssp SCC-SSCCSHHHHHHHH-GGGS-CCCSHHHHHHHHHHHHHTHHHHHH--------CHHHHTTTHHHHHHHTTC-GGGHHH
T ss_pred hcC-chhhHHHHHHHHH-HHhC-CCCcHHHHHHHHHHHHHHHHHHHh--------CHHHHHHHHHHHHHHhCC-chHHHH
Confidence 975 4445677888885 4456 667999999999999999998852 357899999999999966 899999
Q ss_pred HHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHH
Q 039062 477 ACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSST-DETAPMVLQLVPVIMME 555 (871)
Q Consensus 477 a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~ll~~l~~~ 555 (871)
||.+|..+++.+ +..+.||++.+++.+...+.+.+. +...+..++++++.++...+ +...+|+..+++++.+.
T Consensus 547 A~~al~~l~~~~-----~~~l~p~~~~il~~l~~~l~~~~~-~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~ 620 (963)
T 2x19_B 547 SVSTLKKICREC-----KYDLPPYAANIVAVSQDVLMKQIH-KTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQ 620 (963)
T ss_dssp HHHHHHHHHHHT-----GGGCTTTHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHhhHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 999999999875 356889999999999998876432 45778999999999999887 67899999999999999
Q ss_pred HHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCC----------------chhhhhhhHHHHHHHHHHHHcc-
Q 039062 556 LHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEP----------------TKYVFMQYADQIMGLFLRVFAC- 618 (871)
Q Consensus 556 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~----------------~~~~~~~~~~~i~~~l~~~l~~- 618 (871)
|+...+.. .+.+ ........+++++.+++.++.... .+..+.++.+.+++.+..+++.
T Consensus 621 l~~~~~~~----~~~~-~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 695 (963)
T 2x19_B 621 LEKLAEEI----PNPS-NKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKW 695 (963)
T ss_dssp HHHHHSSC----SCHH-HHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC----CCHH-HHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhc
Confidence 98753211 1111 112345688899999998874210 1123556788888888888765
Q ss_pred -cCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh--hcccccHHHHHHHH
Q 039062 619 -RSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE--EKILPYCDGIMTQL 695 (871)
Q Consensus 619 -~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~i~~~l 695 (871)
.+..+.+.++.+++.++..+|+.+.||++.+++.+...+..... ...+.+++.++..++ +...+++..++..+
T Consensus 696 ~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~----~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~ 771 (963)
T 2x19_B 696 LNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQ----ASALDLTRQLVHIFAHEPAHFPPIEALFLLV 771 (963)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCC----HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCc----cHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 35578999999999999999999999999999998887765322 246677788877544 33555665555544
Q ss_pred HH----Hcc-CCCCCCcCCchHHHHHHHHHHhhccChH--Hh-HHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHH
Q 039062 696 LK----DLS-SNQLHRSVKPPIFSCFGDIALAIGENFE--KY-LMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGIL 767 (871)
Q Consensus 696 ~~----~l~-~~~~~~~v~~~~~~~l~~i~~~~~~~~~--~~-~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~ 767 (871)
+. .+. +....++++...+..++.+...++..+. +. ++.+++.+...+... + ..+...++
T Consensus 772 ~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~------~-------~~~~~~~l 838 (963)
T 2x19_B 772 TSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFP------E-------APTVKASC 838 (963)
T ss_dssp HHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCS------C-------HHHHHHHH
T ss_pred HHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCC------C-------HHHHHHHH
Confidence 44 333 2222578999999999999999887654 55 888888888888643 2 34556788
Q ss_pred HHHHHHhhhccCCc-cccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhc
Q 039062 768 EAYSGIFQGFKNSP-KTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLG 826 (871)
Q Consensus 768 ~~~~~l~~~~~~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~ 826 (871)
..+..++...+... ...-+.++.+.++..+...+.+.. ..........++..+....|
T Consensus 839 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~il~~l~~~~~ 897 (963)
T 2x19_B 839 GFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQA-SRSLMDCFADILFALNKHCF 897 (963)
T ss_dssp HHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTS-CGGGHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccC-ChhHHHHHHHHHHHHHHHCh
Confidence 88888887654221 122345777788888877776532 23333334444445544444
No 6
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-44 Score=435.53 Aligned_cols=767 Identities=13% Similarity=0.137 Sum_probs=527.9
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhc
Q 039062 3 MEVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRW 82 (871)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~ 82 (871)
+++.++++.+.+||++.|++|+++|++++++ |+++..+.+++.. +.+.++|++|+++||+.+++ .|
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~--p~~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~-----------~w 72 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEAS--PQAWQFSWQLMQL-GKSQEVQFFGAITLHSKLMK-----------HW 72 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTTS--THHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHH-----------CG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHc-----------cH
Confidence 3578889899999999999999999999998 9999999999976 57899999999999999974 67
Q ss_pred cCCCHHHHHHHHHHHHHhhcCC---chHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCC------ChHHHHHHHH
Q 039062 83 LSLDANVKTQIKTCLLNTLTST---VADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQL------PAHVKQATLE 153 (871)
Q Consensus 83 ~~~~~~~~~~i~~~ll~~l~~~---~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~------~~~~r~~al~ 153 (871)
..++++.+..+|+.+++.+.+. .+.||++++.+++.|++.++| .||++++.+.+.++++ ++..+..++.
T Consensus 73 ~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~ 150 (971)
T 2x1g_F 73 HEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLE 150 (971)
T ss_dssp GGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHH
Confidence 7899999999999999998762 479999999999999999999 9999999999998775 5678899999
Q ss_pred HHHHHhhccC-C----------CccchhhHHHHHHHHHhhhcCCCCC------HHHHHHHHHHHHHhhhc--chhc----
Q 039062 154 TLGYLCEEVS-P----------DVVEQDHVNKILTAVVQGMNASEMN------NDVRLAATRALYNALSF--AQAN---- 210 (871)
Q Consensus 154 ~l~~l~~~~~-~----------~~~~~~~~~~i~~~l~~~l~~~~~~------~~vr~~al~~l~~~~~~--~~~~---- 210 (871)
+|..++++.. . +.+ ..+++.+++.+.+.+...+.+ ..++..+++|+..++.+ .+..
T Consensus 151 iL~~l~EEi~~~~~~~~r~~~~~~l-~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ 229 (971)
T 2x1g_F 151 VLTAIPEEAQVIHTSVKRVVLRAEI-AKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVT 229 (971)
T ss_dssp HHHHHHHHHHHCCCSSCHHHHHHHH-HTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHH
T ss_pred HHHHhHHHHhccCcHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcccccc
Confidence 9999987531 0 111 234566666666666431111 37899999999987762 2211
Q ss_pred -----c--------------------cChhh-----------------------HHHHHHHHHH-------hhccCcH--
Q 039062 211 -----F--------------------SNDME-----------------------RDYIMRVVCE-------ATQSAEL-- 233 (871)
Q Consensus 211 -----~--------------------~~~~~-----------------------~~~i~~~l~~-------~l~~~~~-- 233 (871)
+ ..... ...+++.+.. .+.+.|.
T Consensus 230 ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~ 309 (971)
T 2x1g_F 230 ITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDN 309 (971)
T ss_dssp HHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSC
T ss_pred HHHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccc
Confidence 0 00000 0011111111 1133342
Q ss_pred -HHHHHHHHHHHHHHHHhHHhhH-----------HhHHHHHHHHHHHhhC-----CChhHHHHHHHHHHHHHHHHHhhhh
Q 039062 234 -KIRQAAFECLVSISSTYYEKLA-----------PYMQDIYSITAKAVRE-----DEEPVALQAIEFWSSICDEEIDILE 296 (871)
Q Consensus 234 -~~~~~a~~~l~~l~~~~~~~~~-----------~~~~~l~~~~~~~~~~-----~~~~~~~~a~~~~~~l~~~~~~~~~ 296 (871)
+.....++.+..+.+.++..+. +++..+++.++..... .+++++..+++||..+++...++..
T Consensus 310 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~ 389 (971)
T 2x1g_F 310 EDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSN 389 (971)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhccc
Confidence 6677778888877776655543 4556677777766543 4778999999999999874322110
Q ss_pred hhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCc----c-ccccc-ccHhHHHHHHHHHHHHHcCCCcccchHH
Q 039062 297 EYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQ----D-QEEGA-WNIAMAGGTCLGLVARTVGDDIVPLVIP 370 (871)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~----~-~~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~l~~ 370 (871)
+ +.........+++++.+++.++..+.+.++++ | +|+++ .+.|+++.+++..++...|+.+++.+++
T Consensus 390 ~-------~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~ 462 (971)
T 2x1g_F 390 D-------EQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAA 462 (971)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred c-------cchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 0 00001234667888889999988886543321 1 11122 2678899999999999999889999999
Q ss_pred HHHhhhcC-----CChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccC--CCcHHHHHHHHHHHHHHhhhhcc
Q 039062 371 FIEENIAK-----PDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTK--DPNNHVKDTTAWTLGRIFEFLHG 443 (871)
Q Consensus 371 ~l~~~l~~-----~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~--d~~~~vr~~a~~~l~~~~~~~~~ 443 (871)
++.+.+.+ .+|+.|++++++++++++++. +...++++.+++ ++..+ . |++|.||..++|++|++++++..
T Consensus 463 ~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~-~~~~~~l~~l~~-~l~~l-~~~d~~~~vr~~a~~~l~~~~~~l~~ 539 (971)
T 2x1g_F 463 MLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFG-GEEKRQIPRLMR-VLAEI-PYEKLNVKLLGTALETMGSYCNWLME 539 (971)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHH-HHHHS-CTTTSCHHHHHHHHHHHHHTHHHHC-
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHH-HHHhc-CccccCHHHHHHHHHHHHHHHHHHhc
Confidence 98887765 799999999999999999984 444567888888 56666 5 57999999999999999999852
Q ss_pred CCCCCCccchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHH
Q 039062 444 STIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLR 523 (871)
Q Consensus 444 ~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr 523 (871)
...+++.+++.++..+ + ++|+..||+++.+|++.+. ..+.||++.+++.+...+.+.+. +...+
T Consensus 540 --------~~~~l~~vl~~l~~~l-~-~~v~~~A~~al~~l~~~~~-----~~l~p~~~~ll~~l~~~l~~~~~-~~~~~ 603 (971)
T 2x1g_F 540 --------NPAYIPPAINLLVRGL-N-SSMSAQATLGLKELCRDCQ-----LQLKPYADPLLNACHASLNTGRM-KNSDS 603 (971)
T ss_dssp -----------CHHHHHHHHHHHH-H-SSCHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHHHHHHSTTS-CHHHH
T ss_pred --------CHHHHHHHHHHHHHHh-C-hHHHHHHHHHHHHHHHHHH-----HhccccHHHHHHHHHHHHcCCCC-ChHHH
Confidence 3478999999999999 5 8999999999999998763 45889999999999999987533 45788
Q ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCC--c---
Q 039062 524 TAAYETLNEVVRSST-DETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEP--T--- 597 (871)
Q Consensus 524 ~~a~~~l~~l~~~~~-~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~--- 597 (871)
..++++++.++...+ +...+++..+++++++.+....+....+.++. .-...++++++.++..++.... .
T Consensus 604 ~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~----~~~~~~l~~L~~~~~~l~~~~~~~~~~~ 679 (971)
T 2x1g_F 604 VRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAAR----IRTIFRLNMISTLFSSLNTDVDEQATDQ 679 (971)
T ss_dssp HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHH----HHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhH----HHHHHHHHHHHHHHhhcCCCcCcccccc
Confidence 999999999999876 66789999999999999887643211111111 1223366677777776654200 0
Q ss_pred --hhhhhhhHHHHHHHHHHHHccc--CcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHH
Q 039062 598 --KYVFMQYADQIMGLFLRVFACR--SATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVV 673 (871)
Q Consensus 598 --~~~~~~~~~~i~~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l 673 (871)
.+.+.++.+.+++.+..+++.. +..+.+.++.+++.++..+|..+.||++.+++.+...+++.+. ..+++++
T Consensus 680 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~----~~~l~l~ 755 (971)
T 2x1g_F 680 PIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC----APTLEIS 755 (971)
T ss_dssp ----CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC----HHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc----hHHHHHH
Confidence 2247788899999999988753 5579999999999999999999999999999999998876432 3478888
Q ss_pred HHHHHHhhhc------ccccHHHHHHHHHHHccCC-----CCCCcCCchHHHHHHHHHHhhccChH--Hh-HHHHHHHHH
Q 039062 674 GDICRALEEK------ILPYCDGIMTQLLKDLSSN-----QLHRSVKPPIFSCFGDIALAIGENFE--KY-LMYAMPMLQ 739 (871)
Q Consensus 674 ~~l~~~~~~~------~~~~~~~i~~~l~~~l~~~-----~~~~~v~~~~~~~l~~i~~~~~~~~~--~~-~~~i~~~l~ 739 (871)
+.++..++.+ +...+..+...++..+... ...++++...+..++.+....+..+. +. ++.+++...
T Consensus 756 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~ 835 (971)
T 2x1g_F 756 KTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQ 835 (971)
T ss_dssp HHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHH
Confidence 8888877642 3333444445555555432 11467888999999999999887765 77 889999988
Q ss_pred HHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCc-cccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039062 740 SAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSP-KTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLL 818 (871)
Q Consensus 740 ~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l 818 (871)
..+... +.+ ...+++..+..++..-.... ....+.++.+.++..+...+.+ ...+.....+..++
T Consensus 836 ~~l~~~------~~~-------~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~-~~~~s~~~~~a~~l 901 (971)
T 2x1g_F 836 RGMTLP------ESG-------AIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVGY-LTPRSQVDKFADIL 901 (971)
T ss_dssp HHHTSS------CSS-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHT-TSCGGGGGGGHHHH
T ss_pred HHcCCC------CHH-------HHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHhcc-cCChhHHHHHHHHH
Confidence 888643 221 22356666666554421110 1111223444455555443333 23445555666778
Q ss_pred HHHHhHhccccccccc
Q 039062 819 GDLADTLGSNAGSLIQ 834 (871)
Q Consensus 819 ~~i~~~~~~~~~~~l~ 834 (871)
+.+...+|..+.+|+.
T Consensus 902 ~~l~~~~~~~~~~~l~ 917 (971)
T 2x1g_F 902 LAMNRKYAAEMAVWMK 917 (971)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcHHHHHHHH
Confidence 8887777765555543
No 7
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=1e-41 Score=411.26 Aligned_cols=753 Identities=14% Similarity=0.156 Sum_probs=530.7
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhc
Q 039062 3 MEVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRW 82 (871)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~ 82 (871)
+++.++|+.+++|+++.|++|+++|++++++ |+++..+.+++.+ +.+.++|++|+++||+.+++ .|
T Consensus 16 ~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~--p~~~~~l~~iL~~-s~~~~vr~~aa~~Lk~~i~~-----------~W 81 (1049)
T 3m1i_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDN--PDAWQKADQILQF-STNPQSKFIALSILDKLITR-----------KW 81 (1049)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS--TTGGGGHHHHHHH-CSCHHHHHHHHHHHHHHHHH-----------TG
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHhC--chHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHh-----------hC
Confidence 3688999999999999999999999999998 8999999999977 56899999999999999974 67
Q ss_pred cCCCHHHHHHHHHHHHHhhcCC---------chHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHH
Q 039062 83 LSLDANVKTQIKTCLLNTLTST---------VADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLE 153 (871)
Q Consensus 83 ~~~~~~~~~~i~~~ll~~l~~~---------~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~ 153 (871)
..++++.+..+|+.++..+.+. ++.||++++.+++.|++.+|| +.||++++.|++.++ +++..++.++.
T Consensus 82 ~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~ 159 (1049)
T 3m1i_C 82 KLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMI 159 (1049)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHH
Confidence 7899999999999999998764 368999999999999999999 799999999999986 56667889999
Q ss_pred HHHHHhhccC---CC------------ccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHH
Q 039062 154 TLGYLCEEVS---PD------------VVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERD 218 (871)
Q Consensus 154 ~l~~l~~~~~---~~------------~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~ 218 (871)
+|..++++.. .+ .+ ..+++.+++.+.+.+.. ..+..++..+++|+.+++.+.+...... +
T Consensus 160 ~L~~l~eev~~~~~~~~~~~r~~~lk~~l-~~~~~~i~~~~~~~l~~-~~~~~~~~~aL~~l~~~l~wi~~~~~~~---~ 234 (1049)
T 3m1i_C 160 VLKLLSEEVFDFSAEQMTQAKALHLKNSM-SKEFEQIFKLCFQVLEQ-GSSSSLIVATLESLLRYLHWIPYRYIYE---T 234 (1049)
T ss_dssp HHHHHHHHHHTSCTTTSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTTSCTHHHHS---S
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhhCCHHHHhh---h
Confidence 9999887651 11 12 23566777777777764 4578899999999998877655221000 1
Q ss_pred HHHHHHHHhh--------------------------------------------------------------ccCcHHHH
Q 039062 219 YIMRVVCEAT--------------------------------------------------------------QSAELKIR 236 (871)
Q Consensus 219 ~i~~~l~~~l--------------------------------------------------------------~~~~~~~~ 236 (871)
.+++.+++.+ .+.+.+..
T Consensus 235 ~ll~~l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~ 314 (1049)
T 3m1i_C 235 NILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFL 314 (1049)
T ss_dssp SHHHHHHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHH
T ss_pred hHHHHHHHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHH
Confidence 1222222111 11123333
Q ss_pred HHHHHHHHHHHHHhHHh------hHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCch
Q 039062 237 QAAFECLVSISSTYYEK------LAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPC 310 (871)
Q Consensus 237 ~~a~~~l~~l~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (871)
...++.+..+++.+... ..+++..++++++.....++.++...|++||..+++.... .+. .
T Consensus 315 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~-~~~------------~ 381 (1049)
T 3m1i_C 315 QDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFY-EPL------------K 381 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH-STT------------C
T ss_pred HHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh-chh------------H
Confidence 34444444444433222 2344556677777777777889999999999999884211 000 2
Q ss_pred hhhHHhhhhhhHHHHHHHHhcccCCc----c---------cccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhc
Q 039062 311 FYFIKQALPALVPLLLEILLKQEEDQ----D---------QEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIA 377 (871)
Q Consensus 311 ~~~~~~~~~~l~~~l~~~l~~~~~d~----~---------~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~ 377 (871)
....+++++.+++.++..|.+.+++. | +|++.|+.|+++.++|..++...+..+++.+.+.+.+.++
T Consensus 382 ~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~ 461 (1049)
T 3m1i_C 382 KHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQID 461 (1049)
T ss_dssp GGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhC
Confidence 34566788889999998887643321 0 1234578899999999999988888888888999988876
Q ss_pred --CCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccC-----CCcHHHHHHHHHHHHHHhhhhccCCCCCCc
Q 039062 378 --KPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTK-----DPNNHVKDTTAWTLGRIFEFLHGSTIGTPI 450 (871)
Q Consensus 378 --~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~-----d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 450 (871)
+.+|+.|+++++++|++++.+....-..+++.+++.+.... . |+++.||..++|++|++++++..
T Consensus 462 ~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~-~~~~~~~~~~~v~~~~~~~lgry~~~~~~------- 533 (1049)
T 3m1i_C 462 GSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLT-VKKRGKDNKAVVASDIMYVVGQYPRFLKA------- 533 (1049)
T ss_dssp SSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT-TSSCSHHHHHHHHHHHHHHHHHCHHHHHH-------
T ss_pred CCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH-hhhccccchHHHHHHHHHHHHHHHHHHHh-------
Confidence 37899999999999999988753223345788888877644 2 47888898899999999999852
Q ss_pred cchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccC---CCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHH
Q 039062 451 ITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDV---GPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAA 526 (871)
Q Consensus 451 ~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~---~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a 526 (871)
.+.+++.+++.+++.+.+ +++|+..||++|.+|++.+... ...+.+.||++.+++.+...+.+.+. .-+...
T Consensus 534 -~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~---~~~~~~ 609 (1049)
T 3m1i_C 534 -HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQP---QQVHTF 609 (1049)
T ss_dssp -CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCH---HHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCH---HHHHHH
Confidence 467999999999999987 7999999999999999876432 12445569999999999998887652 235688
Q ss_pred HHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHHHhhhccCCChh---hHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhh
Q 039062 527 YETLNEVVRSSTD--ETAPMVLQLVPVIMMELHKTLEGQKLSSD---EREKQGELQGLLCGCLQVIIQKLGSSEPTKYVF 601 (871)
Q Consensus 527 ~~~l~~l~~~~~~--~~~~~~~~ll~~l~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 601 (871)
+++++.++...+. ...+++..+++++.+.|+........+.+ +.+....+ ...+.|+..++..+|+. |
T Consensus 610 ~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l-~~~l~~~~~~~~~l~~~------f 682 (1049)
T 3m1i_C 610 YKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKII-ANIIKTNVAVCTSMGAD------F 682 (1049)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHH-HHHHHHHHHHHHHHGGG------G
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHH-HHHHHHHHHHHHHhhHH------H
Confidence 9999999999883 47889999999999888765421111111 12211222 45778999999999987 8
Q ss_pred hhhHHHHHHHHHHHHccc-----------Cc--------chhhhHHHHHHHHHHHh-------hhhhhhhhHhHHHHHHh
Q 039062 602 MQYADQIMGLFLRVFACR-----------SA--------TVHEEAMLAIGALAYAA-------GLDFAKYMPDFYKYLEM 655 (871)
Q Consensus 602 ~~~~~~i~~~l~~~l~~~-----------~~--------~~~~~a~~~l~~l~~~~-------~~~~~~~l~~i~~~l~~ 655 (871)
.|++..++..++.+++.. .. ...+.....+..++... +..+.|+++.++..++.
T Consensus 683 ~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~ 762 (1049)
T 3m1i_C 683 YPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLE 762 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 888887777666544321 00 01112222222222222 12234667777776666
Q ss_pred hhcCCcchhHH-HHHHHHHHHHHHHhhhcccccHHHHHHHHHHHc-----cCCCCCCcCCchHHHHHHHHHHhhccChHH
Q 039062 656 GLQNFEEYQVC-AVTVGVVGDICRALEEKILPYCDGIMTQLLKDL-----SSNQLHRSVKPPIFSCFGDIALAIGENFEK 729 (871)
Q Consensus 656 ~l~~~~~~~v~-~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l-----~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~ 729 (871)
.++.. ....+ ..++.+++.++..+++.+.+|++.++..+.... ++....++++...+..++.+...+...|.+
T Consensus 763 ~~~~~-~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~ 841 (1049)
T 3m1i_C 763 DYMNN-VPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLE 841 (1049)
T ss_dssp HHHHS-CGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHhC-CcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHc
Confidence 65421 11111 357889999999999888899998888877764 322236789999999999999988877654
Q ss_pred h----HHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccC-C--ccccc-cccchHHHHHHHHHHh
Q 039062 730 Y----LMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKN-S--PKTQL-LIPYAPHILQFLDSMY 801 (871)
Q Consensus 730 ~----~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~-~--~~~~~-~~~~~~~i~~~l~~~~ 801 (871)
. +..++.....++... + ..+..++++.+..++..... . ..... +..|...++..+...+
T Consensus 842 ~~~~~~~~v~~~~~~al~~~------~-------~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l 908 (1049)
T 3m1i_C 842 LPPAAFKLFVDAICWAFKHN------N-------RDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVL 908 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHTCC------S-------HHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCC------C-------chHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 445555556666443 2 45566788888888877542 1 11122 2345567777777777
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh
Q 039062 802 MEKDMDELVMKTAIGLLGDLAD 823 (871)
Q Consensus 802 ~~~~~~~~~r~~a~~~l~~i~~ 823 (871)
.|.. ++.--.....++..+..
T Consensus 909 ~~~~-h~s~~~~~~~~l~~l~~ 929 (1049)
T 3m1i_C 909 TDSD-HKSGFSKQALLLMKLIS 929 (1049)
T ss_dssp HSTT-CGGGHHHHHHHHHHHHH
T ss_pred hcch-HhhhHHHHHHHHHHHHH
Confidence 7743 44334444556666554
No 8
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=100.00 E-value=3.9e-43 Score=388.67 Aligned_cols=456 Identities=43% Similarity=0.723 Sum_probs=384.2
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhc
Q 039062 3 MEVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRW 82 (871)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~ 82 (871)
|++.++|.+++|||+++|++|+++|++++.++.|+|+..|++++.+.+.+..+|++|+++||+.++++|+...+.....|
T Consensus 1 ~~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 47999999999999999999999999998866699999999999986678999999999999999999988776666789
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCC--ChHHHHHHHHHHHHHhh
Q 039062 83 LSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQL--PAHVKQATLETLGYLCE 160 (871)
Q Consensus 83 ~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~--~~~~r~~al~~l~~l~~ 160 (871)
..++++.+..+|+.++..|.++++.+ +.++.+++.|++.++|...||++++.|.+.+.++ ++..|++++.+|+.+++
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888 9999999999999988669999999999999998 88999999999999999
Q ss_pred ccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHH
Q 039062 161 EVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAF 240 (871)
Q Consensus 161 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~ 240 (871)
...++.+ ..+.+.+++.+...+.+++++..||..|++++.+++.+....+......+.+++.+.+.+.++++++|..++
T Consensus 160 ~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~ 238 (462)
T 1ibr_B 160 DIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238 (462)
T ss_dssp HSCGGGT-GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred hCCchhh-HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 7644555 678889999999999842238999999999999988765544433333456788888888889999999999
Q ss_pred HHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhc-CCCCCCCC-CchhhhHHhh
Q 039062 241 ECLVSISSTYYEKLAPYMQ-DIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYG-SDFTGNSD-IPCFYFIKQA 317 (871)
Q Consensus 241 ~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~ 317 (871)
+++..++..++..+.+++. .+++.++..+.+.+++++..|+++|..+++.......... ....+.+. .....+++++
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (462)
T 1ibr_B 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (462)
T ss_dssp HHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHH
Confidence 9999999999999999999 9999999999999999999999999999986533211111 00011111 1133566777
Q ss_pred hhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcC
Q 039062 318 LPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEG 397 (871)
Q Consensus 318 ~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 397 (871)
++.++|.+++.+...++| +++++|++|.+|..+|+.++..+|+.+++.+++++.+.+++++|++|++++.+++.++++
T Consensus 319 ~~~l~p~l~~~l~~~d~d--~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 319 LQYLVPILTQTLTKQDEN--DDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHHHHHHHHTTCCCSS--CCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred hhhccHHHHHHHHhcccc--cccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 888999998888754333 334569999999999999999999989999999999999999999999999999999998
Q ss_pred CChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhcc
Q 039062 398 PSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMK 468 (871)
Q Consensus 398 ~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 468 (871)
+.++.+.++++.++|.++..+ +|+++.||.+|+|++++++...... .....+++.+++.++..|+
T Consensus 397 ~~~~~~~~~l~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~~~~~~~~~-----~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 397 PEPSQLKPLVIQAMPTLIELM-KDPSVVVRDTAAWTVGRICELLPEA-----AINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp SCTTTTCTTTTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHGGGG-----CCSTTTHHHHHHHHHCC--
T ss_pred CcHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcccc-----cccHHHHHHHHHHHHHHhc
Confidence 754566778889999999999 9999999999999999999998632 1245789999999987663
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.5e-40 Score=394.68 Aligned_cols=718 Identities=14% Similarity=0.158 Sum_probs=558.9
Q ss_pred HHHHHHHHHHhC-CCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 039062 37 SFLLSLSGELAN-DDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQV 115 (871)
Q Consensus 37 ~~~~~l~~il~~-~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~ 115 (871)
..+..+.+++.. .+.+.++|+-|-..|++.-. .++....+. .++..+.+.+..+|..++..
T Consensus 10 ~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-----------------~p~~~~~l~-~il~~~~~~~~~vR~~a~~~ 71 (852)
T 4fdd_A 10 QGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-----------------YPDFNNYLI-FVLTKLKSEDEPTRSLSGLI 71 (852)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT-----------------SHHHHHHHH-HHHHTCTTSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHh-----------------CCCHHHHHH-HHHhccCCCChHHHHHHHHH
Confidence 444444444432 14478999999888865311 233222332 23334456678999999988
Q ss_pred HHHHHhhhcCC---CCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHH
Q 039062 116 IAKVAGIELPQ---KQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDV 192 (871)
Q Consensus 116 l~~i~~~~~~~---~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v 192 (871)
+....+..|.. ..-..+-+.+++.+.+++..+|..+..+++.+.... + ...++.+++.+.+.+. ++++.+
T Consensus 72 Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~-~----~~~wp~ll~~L~~~l~--~~~~~~ 144 (852)
T 4fdd_A 72 LKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKG-E----LQNWPDLLPKLCSLLD--SEDYNT 144 (852)
T ss_dssp HHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHT-T----TTTCTTHHHHHHHHHS--CSSHHH
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc-C----ccccHHHHHHHHHHHc--CCCHHH
Confidence 88776543331 111335667777788888899999999999998764 1 3567888889999998 678999
Q ss_pred HHHHHHHHHHhhhcchhcccC---hhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHh
Q 039062 193 RLAATRALYNALSFAQANFSN---DMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAV 269 (871)
Q Consensus 193 r~~al~~l~~~~~~~~~~~~~---~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~ 269 (871)
|..++.+++.++...+..+.. ....+.+++.+.+.+.++++++|..|+.++..++...+..+.++++.+++.++..+
T Consensus 145 r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~ 224 (852)
T 4fdd_A 145 CEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALA 224 (852)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc
Confidence 999999999987654433211 11236688888888999999999999999998887666666677778888888888
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHH
Q 039062 270 REDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAG 349 (871)
Q Consensus 270 ~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a 349 (871)
.++++++|..|++.+..+++.. +.++.++++.+++.++..+.. .+ ..+|..|
T Consensus 225 ~d~~~~vr~~a~~~L~~l~~~~-------------------~~~~~~~l~~l~~~l~~~~~~--~~-------~~vr~~a 276 (852)
T 4fdd_A 225 GDEEPEVRKNVCRALVMLLEVR-------------------MDRLLPHMHNIVEYMLQRTQD--QD-------ENVALEA 276 (852)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHC-------------------HHHHGGGHHHHHHHHHHHHTC--SS-------HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhC-------------------HHHHHHHHHHHHHHHHHHccC--Cc-------HHHHHHH
Confidence 8999999999999999988752 345666777788888776642 11 2688888
Q ss_pred HHHHHHHHHHc-----CCCcccchHHHHHhhh-----------cC-----------CChhhHHHHHHHHHHhhcCCChhh
Q 039062 350 GTCLGLVARTV-----GDDIVPLVIPFIEENI-----------AK-----------PDWRQREAATYAFGSILEGPSPDK 402 (871)
Q Consensus 350 ~~~l~~l~~~~-----~~~~~~~l~~~l~~~l-----------~~-----------~~~~~r~~a~~~l~~l~~~~~~~~ 402 (871)
.+++..+++.. -...++.++|.+...+ .+ .+|.+|.++..+++.++...+ +.
T Consensus 277 ~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~ 355 (852)
T 4fdd_A 277 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DE 355 (852)
T ss_dssp HHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GG
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-HH
Confidence 88888776421 1234455666665554 33 579999999999999998753 32
Q ss_pred hhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHH
Q 039062 403 LLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGAL 481 (871)
Q Consensus 403 ~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l 481 (871)
.++.+++.+...+ .|+++.+|.+|++++|.+++.... ....+++.++|.++..+.| ++.||..+++++
T Consensus 356 ---~~~~l~~~l~~~l-~~~~~~~R~aa~~alg~i~~~~~~-------~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l 424 (852)
T 4fdd_A 356 ---LLPHILPLLKELL-FHHEWVVKESGILVLGAIAEGCMQ-------GMIPYLPELIPHLIQCLSDKKALVRSITCWTL 424 (852)
T ss_dssp ---GHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHTTTTTHH-------HHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcchH-------HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3567889999999 999999999999999999987752 2246889999999999998 789999999999
Q ss_pred HHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhh
Q 039062 482 YFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLE 561 (871)
Q Consensus 482 ~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 561 (871)
..+++.+.+ ....+|+.++++.++..+.+. ++.+|..++.+++.++...+..+.+|++.+++.++..+++..
T Consensus 425 ~~l~~~~~~----~~~~~~~~~ll~~L~~~L~d~---~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~- 496 (852)
T 4fdd_A 425 SRYAHWVVS----QPPDTYLKPLMTELLKRILDS---NKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQ- 496 (852)
T ss_dssp HHTHHHHHH----SCTTTTHHHHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHhcc----chHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhC-
Confidence 999987643 346789999999999998765 468999999999999999998899999999999999886531
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHH---cccCcchhhhHHHHHHHHHHHh
Q 039062 562 GQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVF---ACRSATVHEEAMLAIGALAYAA 638 (871)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l---~~~~~~~~~~a~~~l~~l~~~~ 638 (871)
. .....++++++.++...+..- .-.+|++.+++.+++.+ .+.+..++ .++.+++.++...
T Consensus 497 -------~-----~~~~~~~~ai~~l~~~~~~~~----~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~ 559 (852)
T 4fdd_A 497 -------H-----KNLLILYDAIGTLADSVGHHL----NKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATAL 559 (852)
T ss_dssp -------H-----HHHHHHHHHHHHHHHHHGGGG----CCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHH
T ss_pred -------h-----HHHHHHHHHHHHHHHHhhhhh----ccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHH
Confidence 1 122347788888888887541 01347888888888654 34455564 7899999999999
Q ss_pred hhhhhhhhHhHHHHHHhhhcC----------------CcchhHHHHHHHHHHHHHHHhhhcccccH--HHHHHHHHHHcc
Q 039062 639 GLDFAKYMPDFYKYLEMGLQN----------------FEEYQVCAVTVGVVGDICRALEEKILPYC--DGIMTQLLKDLS 700 (871)
Q Consensus 639 ~~~~~~~l~~i~~~l~~~l~~----------------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~ 700 (871)
|..+.||++.+++.++..+.+ .++.+++..++.+++.+++.++..+.+|+ +.+++.++..+.
T Consensus 560 g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~ 639 (852)
T 4fdd_A 560 QSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ 639 (852)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTT
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhC
Confidence 999999999988876655432 12456888999999999999999999997 799999999998
Q ss_pred CCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039062 701 SNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNS 780 (871)
Q Consensus 701 ~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~ 780 (871)
++ ...+|..++.+++.++..++..+.+|++.++|.+.+.+... + ..+|.+++.+++.++..++
T Consensus 640 ~~--~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~------~-------~~v~~~a~~alg~i~~~~~-- 702 (852)
T 4fdd_A 640 DK--MPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE------F-------ISVCNNATWAIGEISIQMG-- 702 (852)
T ss_dssp CS--SHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTT------S-------HHHHHHHHHHHHHHHHHHG--
T ss_pred CC--ChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcc------c-------hHHHHHHHHHHHHHHHHhh--
Confidence 76 67899999999999999999999999999999999988432 1 4678899999999988754
Q ss_pred ccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHH
Q 039062 781 PKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEW 860 (871)
Q Consensus 781 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~ 860 (871)
..+.||++.+++.+.+++++++....++..+..++|.++...+..+.|++++ ++.+++..+..-+|..-|+.|-.
T Consensus 703 ---~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~--~~~~~~~~l~~~~d~~e~~~a~~ 777 (852)
T 4fdd_A 703 ---IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQ--FIRPWCTSLRNIRDNEEKDSAFR 777 (852)
T ss_dssp ---GGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHH--HHHHHHHHHHTSCSSHHHHHHHH
T ss_pred ---HhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHH--HHHHHHHHhccccccHHHHHHHH
Confidence 3599999999999999998877788999999999999999988888899998 68888888876678888999998
Q ss_pred HHHHHH
Q 039062 861 ARLAIN 866 (871)
Q Consensus 861 ~~~~~~ 866 (871)
+++.|=
T Consensus 778 ~l~~li 783 (852)
T 4fdd_A 778 GICTMI 783 (852)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 10
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=5.5e-39 Score=376.19 Aligned_cols=753 Identities=11% Similarity=0.108 Sum_probs=507.2
Q ss_pred cHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHcccccchhhhHHHHh
Q 039062 3 MEVTQVLLNAQSI--DGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDK-PVDSRKLAGLILKNALDAKEQHRKFELV 79 (871)
Q Consensus 3 ~~l~~~l~~~~s~--~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~-~~~~r~~a~~~lk~~i~~~~~~~~~~~~ 79 (871)
+++.++++.+++| |++.|++|+++|++++++ |+.+..+..++.+.+. ++++|++|+.+|++.|+
T Consensus 6 ~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s--p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----------- 72 (980)
T 3ibv_A 6 QDVENAVEAALDPSVGPIIKQQATDFIGSLRSS--STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----------- 72 (980)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS--TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC--hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-----------
Confidence 4789999888887 689999999999999998 8899999999987543 89999999999999874
Q ss_pred hhccCCCHH----HHHHHHHHHHHhhcC-----CchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCCh-HHHH
Q 039062 80 QRWLSLDAN----VKTQIKTCLLNTLTS-----TVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPA-HVKQ 149 (871)
Q Consensus 80 ~~~~~~~~~----~~~~i~~~ll~~l~~-----~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~-~~r~ 149 (871)
.++++ .+..+|+.++..+.. ..+.||++++.+++.++..+|| ..||++++.+++.+.+++. ....
T Consensus 73 ----~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~~Wp~~i~~l~~~~~~~~~~~~~~ 147 (980)
T 3ibv_A 73 ----EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-SNWNDFFASLQGVIAASSQSEFSN 147 (980)
T ss_dssp ----HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHHHCCHHHHH
T ss_pred ----hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-ccCchHHHHHHHHhcCCChhHHHH
Confidence 36788 899999999998774 2378999999999999999999 7999999999999976544 3445
Q ss_pred HHHHHHHHHhhccCCCccc-----------------hhhHHHHHHHHHhhhcC--CCCCHHHHHHHHHHHHHhhhcchhc
Q 039062 150 ATLETLGYLCEEVSPDVVE-----------------QDHVNKILTAVVQGMNA--SEMNNDVRLAATRALYNALSFAQAN 210 (871)
Q Consensus 150 ~al~~l~~l~~~~~~~~~~-----------------~~~~~~i~~~l~~~l~~--~~~~~~vr~~al~~l~~~~~~~~~~ 210 (871)
..+++|..+.++.....+. ...++.+++.++..+.. ...++.++..+++|+..++.+.+..
T Consensus 148 ~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~ 227 (980)
T 3ibv_A 148 FYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININ 227 (980)
T ss_dssp HHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHH
T ss_pred HHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHH
Confidence 6677777676775111110 01234445555555531 0367889999999999999886543
Q ss_pred ccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhH---------------------------------------
Q 039062 211 FSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYY--------------------------------------- 251 (871)
Q Consensus 211 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~--------------------------------------- 251 (871)
... .+.+++.++..+. ++++|..|++||..++....
T Consensus 228 ~i~---~~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~ 302 (980)
T 3ibv_A 228 LIV---NEPCMNLLYSFLQ--IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLIN 302 (980)
T ss_dssp HHH---CHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHH
T ss_pred hhh---cchHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 211 1456666666665 35667777776666553310
Q ss_pred -------H--------------hhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCch
Q 039062 252 -------E--------------KLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPC 310 (871)
Q Consensus 252 -------~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (871)
. ...+++..+++.++..+.++++++...++.||..+.+...... . .. ..
T Consensus 303 ~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~-~-------~~--~~ 372 (980)
T 3ibv_A 303 AQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKES-S-------SK--EL 372 (980)
T ss_dssp HHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHT-T-------SC--CC
T ss_pred HHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhcc-c-------cc--cc
Confidence 0 0113444667777777888888999999999998876532110 0 00 01
Q ss_pred hhhHHhhhhhhHHHHHHHHhcccCCcc------cccccc-cHhHHHHHHHHHHHHHcCCCccc----chHHHHHhhhc--
Q 039062 311 FYFIKQALPALVPLLLEILLKQEEDQD------QEEGAW-NIAMAGGTCLGLVARTVGDDIVP----LVIPFIEENIA-- 377 (871)
Q Consensus 311 ~~~~~~~~~~l~~~l~~~l~~~~~d~~------~~~~~~-~~r~~a~~~l~~l~~~~~~~~~~----~l~~~l~~~l~-- 377 (871)
....+++++.+++.++..+.+.++++. +|++.+ ..|+.....++.++...++.+++ .+.+.+.+.+.
T Consensus 373 ~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~ 452 (980)
T 3ibv_A 373 SASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLS 452 (980)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhccc
Confidence 245678889999999999987654221 122223 46766664444444444566666 55666666553
Q ss_pred -CCChhhHHHHHHHHHHhhcCCChhhh-----hHHHHHHHHHHHHHc----cCCCcHHHHHHHHHHHHHHhhhhccCCCC
Q 039062 378 -KPDWRQREAATYAFGSILEGPSPDKL-----LHIVNVALSFMLSAL----TKDPNNHVKDTTAWTLGRIFEFLHGSTIG 447 (871)
Q Consensus 378 -~~~~~~r~~a~~~l~~l~~~~~~~~~-----~~~l~~i~~~l~~~l----~~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 447 (871)
+.+|+.+++++++++++++++..... .++++.+++.+...+ ..+++|.||.++++++|++++++.
T Consensus 453 ~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~----- 527 (980)
T 3ibv_A 453 PENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFD----- 527 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGG-----
T ss_pred CCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHh-----
Confidence 46799999999999999998742111 123445566666554 138999999999999999999996
Q ss_pred CCccchhhHHHHHHHHHH--hccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccC----Chhh-
Q 039062 448 TPIITQANCQQIITVLLQ--SMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRE----DAGE- 519 (871)
Q Consensus 448 ~~~~~~~~~~~il~~l~~--~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~----~~~~- 519 (871)
.++.+++.+++.++. .+.+ +++|+.+|+.++.+|++.+ +..+.||++.++..+...+... +..+
T Consensus 528 ---~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~-----~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~ 599 (980)
T 3ibv_A 528 ---YESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI-----KKQVVNYTESSLAMLGDLLNISVSPVTDMDA 599 (980)
T ss_dssp ---TCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT-----TTTCSSSHHHHHHHTTGGGCCCCCCCCC--C
T ss_pred ---cCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh-----hHHhhhHHHHHHHHHHHhhcCcCCCCCcccc
Confidence 246899999999999 8876 6899999999999999876 4578899999999998877621 1000
Q ss_pred -------------hhHHHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHH
Q 039062 520 -------------SRLRTAAYETLNEVVRSST---DETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGC 583 (871)
Q Consensus 520 -------------~~vr~~a~~~l~~l~~~~~---~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (871)
.+-+...++++|.++...+ +....++..+++++++.++...+....+.++. . ...+.+.+
T Consensus 600 ~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~---~-~i~~~i~a 675 (980)
T 3ibv_A 600 PVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENI---I-SVYCSLMA 675 (980)
T ss_dssp SSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHH---H-HHHHHHHH
T ss_pred cccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHH---H-HHHHHHHH
Confidence 1235679999999998865 35678999999999999988764222211221 1 22357888
Q ss_pred HHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcc--cCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCc
Q 039062 584 LQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFAC--RSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFE 661 (871)
Q Consensus 584 l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~ 661 (871)
++.+++.+.............+.++++.++..++. .+..+|+++..++.+++..+|..+.|+++.++..++..++.
T Consensus 676 l~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~-- 753 (980)
T 3ibv_A 676 IGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDM-- 753 (980)
T ss_dssp HHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCT--
T ss_pred HHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCH--
Confidence 89999887643111111455677888888888874 46679999999999999999999999999999998865542
Q ss_pred chhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHH
Q 039062 662 EYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSA 741 (871)
Q Consensus 662 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~ 741 (871)
......+++++.++..++.++.+.+.++++.++...- ..+.
T Consensus 754 --~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if-------------~~l~------------------------ 794 (980)
T 3ibv_A 754 --NELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIF-------------SSLS------------------------ 794 (980)
T ss_dssp --TTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHH-------------HHTT------------------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhc------------------------
Confidence 2344567777777777776665555555544443211 0000
Q ss_pred HhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhc-cCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 039062 742 ADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGF-KNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGD 820 (871)
Q Consensus 742 l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~ 820 (871)
.. ..++ |+......+|++.+..+..++..- ...-..+.-.++++.++..+.....+- .+...++.|+.++..
T Consensus 795 --~~---~~~t-d~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~-~d~~~~K~a~~~l~~ 867 (980)
T 3ibv_A 795 --AA---PQGT-DDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLV-GEPATQKSSIALVSK 867 (980)
T ss_dssp --C-------C-CHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC------CHHHHHHHHHHHH
T ss_pred --CC---CCCc-HHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccC-CChHHHHHHHHHHHH
Confidence 00 0001 111123557777777777776632 211111222467778888887765542 467789999999999
Q ss_pred HHhHhcc-c----ccccccchHHHHHHHHHHHcCCChhhHH
Q 039062 821 LADTLGS-N----AGSLIQQSLTSKDFLNECLSSKDHMIKE 856 (871)
Q Consensus 821 i~~~~~~-~----~~~~l~~~~~v~~~l~~~~~~~~~~~~~ 856 (871)
++..+|+ + |..|+.+ +++-.+... .+.+.+.++
T Consensus 868 ~v~~~~~~~~~~gf~~f~~~--~~~~~f~~p-~~~~f~~~D 905 (980)
T 3ibv_A 868 MVSLWGGKDGIAGFENFTLS--LTPLCFEMP-VNPNFNTRD 905 (980)
T ss_dssp HHHC-------CCHHHHHHH--HHHHHHHGG-GC-------
T ss_pred HHHHHCCCCcchHHHHHHHH--HHHHHHHhh-cCCCCChhh
Confidence 9999964 2 4555544 344334433 334444443
No 11
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=6.2e-38 Score=366.88 Aligned_cols=735 Identities=15% Similarity=0.216 Sum_probs=501.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhcc
Q 039062 4 EVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWL 83 (871)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~ 83 (871)
++.+++..+++|+++.|++|+++|++++++ |+++..+..++.+ +.++++|++|+++||+.+++ .|.
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~s--p~aw~~~~~iL~~-s~~~~vR~faa~~Lk~~I~~-----------~W~ 82 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN--PDAWQKADQILQF-STNPQSKFIALSILDKLITR-----------KWK 82 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHC--TTGGGGHHHHHHH-CCCHHHHHHHHHHHHHHHHH-----------HGG
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHcC--ccHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHh-----------hhh
Confidence 688899999999999999999999999998 8888888888876 56889999999999999974 677
Q ss_pred CCCHHHHHHHHHHHHHhhcCC---------chHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHH
Q 039062 84 SLDANVKTQIKTCLLNTLTST---------VADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLET 154 (871)
Q Consensus 84 ~~~~~~~~~i~~~ll~~l~~~---------~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~ 154 (871)
.++++.+..+|+.++..+... .+.++++++.+++.+++.+|| ..||++++.+.+.+++ ++..+..++.+
T Consensus 83 ~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p-~~Wp~~l~dL~~~l~~-~~~~~~~~L~i 160 (1023)
T 4hat_C 83 LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSSS-SVNVCENNMIV 160 (1023)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh-hhchHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 899999999999999987542 357888999999999999999 6999999999999865 45568889999
Q ss_pred HHHHhhcc---CCCccc-----------hhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHH
Q 039062 155 LGYLCEEV---SPDVVE-----------QDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYI 220 (871)
Q Consensus 155 l~~l~~~~---~~~~~~-----------~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i 220 (871)
|..+.++. +.+.++ ...++.+++.+...+.+ ..+..+...+++|++.++.+.+-.... ...+
T Consensus 161 L~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~-~~~~~l~~~~L~~l~s~l~WI~i~~i~---~~~l 236 (1023)
T 4hat_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQ-GASSSLIVATLESLLRYLHWIPYRYIY---ETNI 236 (1023)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTTSCTHHHH---SSSH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhCCHHHhc---chhH
Confidence 99988874 112221 23466777777777764 456678889999999988876532110 0234
Q ss_pred HHHHH-HhhccCcHHHHHHHHHHHHHHHH---------------------------------------------------
Q 039062 221 MRVVC-EATQSAELKIRQAAFECLVSISS--------------------------------------------------- 248 (871)
Q Consensus 221 ~~~l~-~~l~~~~~~~~~~a~~~l~~l~~--------------------------------------------------- 248 (871)
++.++ ..+. ++++|..|++||..++.
T Consensus 237 l~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~ 314 (1023)
T 4hat_C 237 LELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFL 314 (1023)
T ss_dssp HHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHH
T ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHH
Confidence 45555 4443 45566666666666654
Q ss_pred ------------HhHHhhH--HhHHHH----HHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCch
Q 039062 249 ------------TYYEKLA--PYMQDI----YSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPC 310 (871)
Q Consensus 249 ------------~~~~~~~--~~~~~l----~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (871)
.+...+. +....+ +++++.....++.++...+++||..+++.-. .+ + ..
T Consensus 315 ~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~---~e--------~--~~ 381 (1023)
T 4hat_C 315 QDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLF---YE--------P--LK 381 (1023)
T ss_dssp HHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT---TS--------T--TT
T ss_pred HHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH---hc--------h--HH
Confidence 2111111 010111 1122223334566777888999999887421 11 0 02
Q ss_pred hhhHHhhhhhhHHHHHHHHhcccCC-----ccc--------ccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhc
Q 039062 311 FYFIKQALPALVPLLLEILLKQEED-----QDQ--------EEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIA 377 (871)
Q Consensus 311 ~~~~~~~~~~l~~~l~~~l~~~~~d-----~~~--------~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~ 377 (871)
....++++..+++.++..+.+++++ +++ |.++....+...++|..++...++.+++.+.+.+.+.+.
T Consensus 382 ~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~ 461 (1023)
T 4hat_C 382 KHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQID 461 (1023)
T ss_dssp GGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 3467788889999999999887632 111 001112222334888888888888888888898887776
Q ss_pred C--CChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccC-----CCcHHHHHHHHHHHHHHhhhhccCCCCCCc
Q 039062 378 K--PDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTK-----DPNNHVKDTTAWTLGRIFEFLHGSTIGTPI 450 (871)
Q Consensus 378 ~--~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~-----d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 450 (871)
+ .+|+.|+++++++|++++++.++...++++.+++.++..+ . |+.+.||.+++|++|++++++.
T Consensus 462 ~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~-~~~~~~d~k~~v~~t~~~~lGry~~wl~-------- 532 (1023)
T 4hat_C 462 GSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLC-VKKRGKDNKAVVASDIMYVVGQYPRFLK-------- 532 (1023)
T ss_dssp STTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHHHHTCHHHHH--------
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhh-hccccCcchHHHHHHHHHHHHHHHHHHh--------
Confidence 4 6899999999999999999865557789999999999887 5 5778899999999999999995
Q ss_pred cchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccC---CCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHH
Q 039062 451 ITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDV---GPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAA 526 (871)
Q Consensus 451 ~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~---~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a 526 (871)
.++.+++.+++.+++.+.+ +++|+..||+++.++++.+... ...+.+.||++.+++.+.....+.+ ...+..+
T Consensus 533 ~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~---~~~~~~l 609 (1023)
T 4hat_C 533 AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQ---PQQVHTF 609 (1023)
T ss_dssp HCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSC---HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCC---HHHHHHH
Confidence 3578999999999999986 7999999999999999987542 2345668999999999999887654 3556799
Q ss_pred HHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHHhhhcc--CCC-hhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhh
Q 039062 527 YETLNEVVRSSTDE--TAPMVLQLVPVIMMELHKTLEGQ--KLS-SDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVF 601 (871)
Q Consensus 527 ~~~l~~l~~~~~~~--~~~~~~~ll~~l~~~l~~~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 601 (871)
+++++.+++..+.. ...++..+++++.+.|+...+.. ... -.|++.. .....+++|++.++..+|.. |
T Consensus 610 yeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~-~~l~~il~~~~~v~~~lg~~------f 682 (1023)
T 4hat_C 610 YKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETV-KIIANIIKTNVAVCTSMGAD------F 682 (1023)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHH-HHHHHHHHHHHHHHHHHGGG------G
T ss_pred HHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHH-HHHHHHHHHHHHHHHHhcHH------H
Confidence 99999999999853 56688999999999888754210 000 0111111 23455888999999999987 9
Q ss_pred hhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh
Q 039062 602 MQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE 681 (871)
Q Consensus 602 ~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 681 (871)
.+++.++++.++++.+.- -..+...+...|....+. | ..+.++ .++...+.++...+....
T Consensus 683 ~~~~~~i~~~~l~~y~~~--------s~~i~~~~~~~g~~~~~~-----~-~~r~~r-----~ik~~il~l~~~~i~~~~ 743 (1023)
T 4hat_C 683 YPQLGHIYYNMLQLYRAV--------SSMISAQVAAEGLIATKT-----P-KVRGLR-----TIKKEILKLVETYISKAR 743 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHCGGGGGS-----H-HHHHHH-----HHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHhCCchhhcc-----H-HHHHHH-----HHHHHHHHHHHHHHhcCC
Confidence 999999999988766531 122222223223221110 0 000110 233333334443333221
Q ss_pred --h-cccccHHHHHHHHHHHccCCCCCCcCCc-hHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHH
Q 039062 682 --E-KILPYCDGIMTQLLKDLSSNQLHRSVKP-PIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTE 757 (871)
Q Consensus 682 --~-~~~~~~~~i~~~l~~~l~~~~~~~~v~~-~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~ 757 (871)
+ -...+++.++..++....+. ....|. .++.+++.++..+|..+.+.++.++..+.+.--...+.+-.+
T Consensus 744 ~~~~~~~~~~~~l~~~vl~dY~~~--~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~----- 816 (1023)
T 4hat_C 744 NLDDVVKVLVEPLLNAVLEDYMNN--VPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTE----- 816 (1023)
T ss_dssp CHHHHHHHTHHHHHHHHHHHHHHS--CGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSS-----
T ss_pred CHHHHHHHhHHHHHHHHHHHHHhC--ChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccccc-----
Confidence 0 01223456666666655544 344554 688999999999999999999998888765543322111011
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCccccccc--c--chHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhc
Q 039062 758 YTNSLRNGILEAYSGIFQGFKNSPKTQLLI--P--YAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLG 826 (871)
Q Consensus 758 ~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~--~--~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~ 826 (871)
..+.|..-.+.+..+.+.... .+. | .+..++..+.-.++. .++++-..++.++.++...+.
T Consensus 817 -~Pe~r~~ff~ll~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~a~~h--~~r~~~~~~l~~~~~ll~~~~ 881 (1023)
T 4hat_C 817 -YPEHRVEFYKLLKVINEKSFA-----AFLELPPAAFKLFVDAICWAFKH--NNRDVEVNGLQIALDLVKNIE 881 (1023)
T ss_dssp -SHHHHHHHHHHHHHHHHHCTH-----HHHTSCHHHHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHHChH-----HHHcCCHHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHHHH
Confidence 134444444445444444211 111 1 233455555555554 478888888888888877654
No 12
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.4e-39 Score=402.02 Aligned_cols=660 Identities=15% Similarity=0.179 Sum_probs=513.8
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhh
Q 039062 3 MEVTQVLLNAQSIDGTVRKHAEESLKQFQEQN--------LPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHR 74 (871)
Q Consensus 3 ~~l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~--------~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~ 74 (871)
+++.++|.++.|+|+++|.+|+..|.+....+ .+.++..++..+.+ .++.+|+.|+..|.+...
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~------ 77 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED--KNGEVQNLAVKCLGPLVS------ 77 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHT------
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHH------
Confidence 67999999999999999999999998654432 23667777787764 579999999999987654
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCC--------CchHHHHHHHHhhc-CCCh
Q 039062 75 KFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQK--------QWPELIVSLLSNVH-QLPA 145 (871)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~--------~~~~ll~~L~~~l~-~~~~ 145 (871)
.+++.....+++.++..+.++++.+|..++.+++.++....+.. .|++++|.|+..+. ++++
T Consensus 78 ---------~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~ 148 (1230)
T 1u6g_C 78 ---------KVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDV 148 (1230)
T ss_dssp ---------TSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCH
T ss_pred ---------hCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCch
Confidence 34566778999999999999999999999999999998764421 49999999999998 4788
Q ss_pred HHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHH
Q 039062 146 HVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVC 225 (871)
Q Consensus 146 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~ 225 (871)
.+|.+|+.++..+++.. ++.+ ..+.+.+++.++..+. ++++.+|..|+.+++.++...+..+. +.+++.+.
T Consensus 149 ~~~~~al~~l~~~~~~~-~~~l-~~~~~~ll~~l~~~L~--~~~~~vR~~a~~al~~l~~~~~~~~~-----~~~l~~l~ 219 (1230)
T 1u6g_C 149 SVQLEALDIMADMLSRQ-GGLL-VNFHPSILTCLLPQLT--SPRLAVRKRTIIALGHLVMSCGNIVF-----VDLIEHLL 219 (1230)
T ss_dssp HHHHHHHHHHHHHHHHT-CSSC-TTTHHHHHHHHGGGGG--CSSHHHHHHHHHHHHHHTTTC----C-----TTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-HhHH-HHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHH
Confidence 99999999999999887 6666 5688999999999998 78899999999999999876654331 23444444
Q ss_pred HhhccC-cHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCC
Q 039062 226 EATQSA-ELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTG 304 (871)
Q Consensus 226 ~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~ 304 (871)
+.+.+. ++.+|..+++++..++...+..+.+|++.+++.++..+.+.++++|..++.++..+++..
T Consensus 220 ~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~------------- 286 (1230)
T 1u6g_C 220 SELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC------------- 286 (1230)
T ss_dssp HHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT-------------
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC-------------
Confidence 444322 346788999999999998888899999999999999999988999999999888887631
Q ss_pred CCCCchhhhHHhhhhhhHHHHHHHHhccc--------------------CCc--------ccccccccHhHHHHHHHHHH
Q 039062 305 NSDIPCFYFIKQALPALVPLLLEILLKQE--------------------EDQ--------DQEEGAWNIAMAGGTCLGLV 356 (871)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~--------------------~d~--------~~~~~~~~~r~~a~~~l~~l 356 (871)
..-+.++++.++|.+++.+.+.+ +++ ++++..|.+|.+|..+++.+
T Consensus 287 ------~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l 360 (1230)
T 1u6g_C 287 ------PKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV 360 (1230)
T ss_dssp ------TCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHH
T ss_pred ------hHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHH
Confidence 12234566777887776554211 000 01123589999999999999
Q ss_pred HHHcCC---CcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCC------------------hhhhhHHHHHHHHHHH
Q 039062 357 ARTVGD---DIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPS------------------PDKLLHIVNVALSFML 415 (871)
Q Consensus 357 ~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~------------------~~~~~~~l~~i~~~l~ 415 (871)
+...|+ .+++.+++.+...+.+.++.+|.+++.+++.+....+ ...+..+++.+++.+.
T Consensus 361 ~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~ 440 (1230)
T 1u6g_C 361 VSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH 440 (1230)
T ss_dssp HTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHH
T ss_pred HHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHH
Confidence 987764 3566778888888888899999999998888765321 1345667788889889
Q ss_pred HHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCC---hHHHHHHHHHHHHHHhhcccCC
Q 039062 416 SALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDT---PNVAEKACGALYFLAQGYEDVG 492 (871)
Q Consensus 416 ~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~---~~v~~~a~~~l~~l~~~~~~~~ 492 (871)
+.+ +|+++.+|..++.+++.++...+. ....+++.+++.+++.+.|. ..++..++.++..+++...
T Consensus 441 ~~l-~~~~~~vr~~~~~~L~~l~~~~~~-------~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~--- 509 (1230)
T 1u6g_C 441 KQM-KEKSVKTRQCCFNMLTELVNVLPG-------ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHS--- 509 (1230)
T ss_dssp HHT-TCSCHHHHHHHHHHHHHHHHHSTT-------TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSC---
T ss_pred HHh-ccCCHHHHHHHHHHHHHHHHHchh-------hhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCC---
Confidence 999 999999999999999999988642 23468999999999999973 3889999999988876543
Q ss_pred CCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCC-------CcHHHHHHHHHHHHHHHHHhhhccCC
Q 039062 493 PSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTD-------ETAPMVLQLVPVIMMELHKTLEGQKL 565 (871)
Q Consensus 493 ~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~~~ll~~l~~~l~~~~~~~~~ 565 (871)
++.+.||++.+++.++..+.+. +..+|..++.+++.++...+. .+.+|++.++|.++..+...
T Consensus 510 -~~~~~~~l~~llp~L~~~l~d~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~------ 579 (1230)
T 1u6g_C 510 -PQVFHPHVQALVPPVVACVGDP---FYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA------ 579 (1230)
T ss_dssp -GGGGHHHHTTTHHHHHHHHTCS---SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCS------
T ss_pred -HHHHHhHHHHHHHHHHHHHccc---chHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhcc------
Confidence 4557889999999999988775 347888899999999988765 78999999999999988431
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhh-hhhhh
Q 039062 566 SSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAG-LDFAK 644 (871)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~ 644 (871)
+.+ ..++..++.+++.++...|.. +.++++.+++.+...+.+. ..|..++.+++.++.... .++.+
T Consensus 580 -d~~----~~vr~~a~~~lg~L~~~~g~~------~~~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~~~~~~~ 646 (1230)
T 1u6g_C 580 -DID----QEVKERAISCMGQIICNLGDN------LGSDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDLRP 646 (1230)
T ss_dssp -SSC----HHHHHHHHHHHHHHHHHTGGG------CCTHHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCCHH
T ss_pred -CCC----HHHHHHHHHHHHHHHHHhCch------hhhhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCccccchHH
Confidence 122 247788999999999999876 7788899999988888743 467888888888875432 25678
Q ss_pred hhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhccc-ccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhh
Q 039062 645 YMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKIL-PYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAI 723 (871)
Q Consensus 645 ~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~ 723 (871)
+++.++|.+...+.+. +..+|..++.+++.++...+..+. +++..++..++..+++. +..++..++.+++.++...
T Consensus 647 ~~~~i~~~L~~~l~~~-~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~--D~~~~~~~~~~L~~l~~~~ 723 (1230)
T 1u6g_C 647 VLGEGVPILASFLRKN-QRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISES--DMHVSQMAISFLTTLAKVY 723 (1230)
T ss_dssp HHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTT--CHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcc--hHHHHHHHHHHHHHHHHhC
Confidence 9999999999988755 558999999999999999875542 22223333333333333 5567788999999999888
Q ss_pred ccChHHhHHHHHHHHHHHHhh
Q 039062 724 GENFEKYLMYAMPMLQSAADL 744 (871)
Q Consensus 724 ~~~~~~~~~~i~~~l~~~l~~ 744 (871)
+..+.++.+.+++.+...+..
T Consensus 724 ~~~~~~~~~~~l~~~~~~l~~ 744 (1230)
T 1u6g_C 724 PSSLSKISGSILNELIGLVRS 744 (1230)
T ss_dssp GGGGGGTTTTTHHHHHHHHTC
T ss_pred chhHHHhHHhHHHHHHHHHcC
Confidence 887778888888888877754
No 13
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1e-36 Score=365.77 Aligned_cols=711 Identities=13% Similarity=0.122 Sum_probs=535.1
Q ss_pred CCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCC--chHHHHHHHHHHHHHHhhhc---
Q 039062 50 DKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTST--VADARSTSSQVIAKVAGIEL--- 124 (871)
Q Consensus 50 ~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~--~~~vr~~~a~~l~~i~~~~~--- 124 (871)
+.+.++|+.|...|++.-. +....+...|+..+.++ +..+|..++.++.......+
T Consensus 12 s~d~~~r~~A~~~L~~~~~-------------------~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~ 72 (876)
T 1qgr_A 12 SPDRLELEAAQKFLERAAV-------------------ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDI 72 (876)
T ss_dssp CSCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred CCCHHHHHHHHHHHHHHHh-------------------cChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHh
Confidence 3478999999999976321 12345667788887774 47899999999988754211
Q ss_pred ---CCCCchH--------HHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCC--CHH
Q 039062 125 ---PQKQWPE--------LIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEM--NND 191 (871)
Q Consensus 125 ---~~~~~~~--------ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~--~~~ 191 (871)
+...|+. +.+.+++.+.++++.+ ..+..+++.++....+ ..+++.+++.+.+.+. ++ ++.
T Consensus 73 ~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~----~~~w~~ll~~l~~~l~--~~~~~~~ 145 (876)
T 1qgr_A 73 KAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP----VNQWPELIPQLVANVT--NPNSTEH 145 (876)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG----GTCCTTHHHHHHHHHH--CTTCCHH
T ss_pred HHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCc----ccccHHHHHHHHHHHh--CCCCCHH
Confidence 0124543 3344778888777777 8899999988775412 3567888889999888 56 899
Q ss_pred HHHHHHHHHHHhhhcch-hcccChhhHHHHHHHHHHhhccC--cHHHHHHHHHHHHHHHHHhHHhhHHh--HHHHHHHHH
Q 039062 192 VRLAATRALYNALSFAQ-ANFSNDMERDYIMRVVCEATQSA--ELKIRQAAFECLVSISSTYYEKLAPY--MQDIYSITA 266 (871)
Q Consensus 192 vr~~al~~l~~~~~~~~-~~~~~~~~~~~i~~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~l~~~~~ 266 (871)
+|..+++++..++.... ..+ ....+.+++.+...+.++ ++++|..+++++..++...+..+... ...+++.+.
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~--~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~ 223 (876)
T 1qgr_A 146 MKESTLEAIGYICQDIDPEQL--QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223 (876)
T ss_dssp HHHHHHHHHHHHHHHSCHHHH--GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHhhH--HhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999886532 222 123467888888888776 68999999999999876533322211 123566666
Q ss_pred HHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhh-hhHHHHHHHHhcccCCcccccccccH
Q 039062 267 KAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALP-ALVPLLLEILLKQEEDQDQEEGAWNI 345 (871)
Q Consensus 267 ~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~d~~~~~~~~~~ 345 (871)
..+.+.+.+++..+++++..+++.. +..+.+++. .+++.++..+.. ++ ..+
T Consensus 224 ~~~~~~~~~vr~~a~~~l~~l~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~--~~-------~~v 275 (876)
T 1qgr_A 224 EATQCPDTRVRVAALQNLVKIMSLY-------------------YQYMETYMGPALFAITIEAMKS--DI-------DEV 275 (876)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHS-------------------GGGCHHHHTTTHHHHHHHHHTC--SS-------HHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHHHHhcC--Cc-------hHH
Confidence 6777888899999999999888752 233445555 777877765532 11 257
Q ss_pred hHHHHHHHHHHHHHc-------------C----C---C----cccchHHHHHhhhc-------CCChhhHHHHHHHHHHh
Q 039062 346 AMAGGTCLGLVARTV-------------G----D---D----IVPLVIPFIEENIA-------KPDWRQREAATYAFGSI 394 (871)
Q Consensus 346 r~~a~~~l~~l~~~~-------------~----~---~----~~~~l~~~l~~~l~-------~~~~~~r~~a~~~l~~l 394 (871)
|..|.+++..++... + . . .++.+++.+.+.+. +.+|..|.++..+++.+
T Consensus 276 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l 355 (876)
T 1qgr_A 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHH
Confidence 777777777776542 0 0 1 12344444444443 45799999999999999
Q ss_pred hcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHH
Q 039062 395 LEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNV 473 (871)
Q Consensus 395 ~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v 473 (871)
+..++ +. .++.+++.+...+ .|+++.+|.++++++|.++..... .....+++.++|.++..+.| ++.|
T Consensus 356 ~~~~~-~~---~~~~~l~~l~~~l-~~~~~~~r~~a~~~l~~i~~~~~~------~~~~~~~~~~l~~l~~~l~d~~~~v 424 (876)
T 1qgr_A 356 ATCCE-DD---IVPHVLPFIKEHI-KNPDWRYRDAAVMAFGCILEGPEP------SQLKPLVIQAMPTLIELMKDPSVVV 424 (876)
T ss_dssp HHHHG-GG---GHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTSSSSCH------HHHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred HHHCc-Hh---hHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHcCCCH------HHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 98763 32 3667889999999 999999999999999999876531 11235788899999999987 7899
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcC--------------C
Q 039062 474 AEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSST--------------D 539 (871)
Q Consensus 474 ~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~--------------~ 539 (871)
|..|++++..+++.+.+. ....++++.+++.++..+.+. +.+|..+..+++.++...+ .
T Consensus 425 r~~a~~~l~~~~~~~~~~---~~~~~~l~~~l~~l~~~l~~~----~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~ 497 (876)
T 1qgr_A 425 RDTAAWTVGRICELLPEA---AINDVYLAPLLQCLIEGLSAE----PRVASNVCWAFSSLAEAAYEAADVADDQEEPATY 497 (876)
T ss_dssp HHHHHHHHHHHHHHCGGG---TSSTTTHHHHHHHHHHHTTSC----HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCC
T ss_pred HHHHHHHHHHHHHhCchh---cccHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHhhhccccccccccccch
Confidence 999999999999876431 125689999999999998753 5789999999999998864 3
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHccc
Q 039062 540 ETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACR 619 (871)
Q Consensus 540 ~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~ 619 (871)
.+.+|++.++|.++..+.... .++ ..++..++++++.++...+.+ ..++...+++.++..+...
T Consensus 498 ~l~~~~~~il~~L~~~l~~~~------~~~----~~~r~~~~~~l~~l~~~~~~~------~~~~~~~l~~~l~~~l~~~ 561 (876)
T 1qgr_A 498 CLSSSFELIVQKLLETTDRPD------GHQ----NNLRSSAYESLMEIVKNSAKD------CYPAVQKTTLVIMERLQQV 561 (876)
T ss_dssp SSTTTHHHHHHHHHHHTTSCS------SCS----TTHHHHHHHHHHHHHHTCCST------THHHHHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHhCcC------cch----hhHHHHHHHHHHHHHHHCchh------hHHHHHHHHHHHHHHHHHH
Confidence 478999999999998875431 011 135667899999999998876 7788888888888877641
Q ss_pred ---------C------cchhhhHHHHHHHHHHHhh-hhhhhhhHhHHHHHHhhhcCCcc-hhHHHHHHHHHHHHHHHhhh
Q 039062 620 ---------S------ATVHEEAMLAIGALAYAAG-LDFAKYMPDFYKYLEMGLQNFEE-YQVCAVTVGVVGDICRALEE 682 (871)
Q Consensus 620 ---------~------~~~~~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~~~~~-~~v~~~a~~~l~~l~~~~~~ 682 (871)
+ ..++..++.+++.++..+| ..+.||++.++|.+...+++..+ ..++..++.+++.++...+.
T Consensus 562 ~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~ 641 (876)
T 1qgr_A 562 LQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGG 641 (876)
T ss_dssp HTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHh
Confidence 1 3467788999999999999 89999999999999999986532 36889999999999999999
Q ss_pred cccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q 039062 683 KILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSL 762 (871)
Q Consensus 683 ~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~ 762 (871)
.+.||++.+++.+...+.+.. +..+|..++.+++.++...|..+.||++.+++.+.+.+... +. ...+
T Consensus 642 ~~~~~~~~~~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~------~~-----~~~~ 709 (876)
T 1qgr_A 642 EFLKYMEAFKPFLGIGLKNYA-EYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNE------NV-----HRSV 709 (876)
T ss_dssp GGGGGHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCT------TS-----CGGG
T ss_pred hHHHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCc------cc-----cHHh
Confidence 999999999999999998652 56799999999999999999999999999999999998752 11 1347
Q ss_pred HHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCC--CC-------HHHHHHHHHHHHHHHhHhcc------
Q 039062 763 RNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKD--MD-------ELVMKTAIGLLGDLADTLGS------ 827 (871)
Q Consensus 763 r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~--~~-------~~~r~~a~~~l~~i~~~~~~------ 827 (871)
|..++.+++.++..++ +.+.+|++.+++.+...++... .+ .++|..++.+++.+++.+|.
T Consensus 710 ~~~~~~~l~~i~~~~g-----~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~ 784 (876)
T 1qgr_A 710 KPQILSVFGDIALAIG-----GEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVH 784 (876)
T ss_dssp HHHHHHHHHHHHHHHG-----GGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCC
T ss_pred hHHHHHHHHHHHHHhc-----hhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 8889999999988764 4488999999999988876421 12 27899999999999998874
Q ss_pred ----cccccccchHHHHHHHHHHHcCC--ChhhHHHHHHHHHHHHHHhc
Q 039062 828 ----NAGSLIQQSLTSKDFLNECLSSK--DHMIKESAEWARLAINKAIS 870 (871)
Q Consensus 828 ----~~~~~l~~~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 870 (871)
.+.||++. +..++.....+. +..+|..|..+++.|-..+|
T Consensus 785 ~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~ 830 (876)
T 1qgr_A 785 PDVMLVQPRVEF---ILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFG 830 (876)
T ss_dssp GGGGGSGGGHHH---HHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHH---HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 46788876 557777765555 78999999999999877654
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.4e-35 Score=355.28 Aligned_cols=717 Identities=14% Similarity=0.150 Sum_probs=545.6
Q ss_pred CCHHHHHHHHHHHHHHH----------------h----hChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhh
Q 039062 15 IDGTVRKHAEESLKQFQ----------------E----QNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHR 74 (871)
Q Consensus 15 ~~~~~r~~A~~~L~~~~----------------~----~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~ 74 (871)
.+.++|..|-..|+..- . +.....-..+++.+.+ .+..+|..++..+.......++
T Consensus 53 ~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~--~~~~vr~~~~~~l~~i~~~~~p-- 128 (861)
T 2bpt_A 53 TKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVS--IEPRIANAAAQLIAAIADIELP-- 128 (861)
T ss_dssp SCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHGG--
T ss_pred CChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHHHHHhhCc--
Confidence 46789999988886531 1 1112334456666665 3688999999999877654322
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHHhhhcCC-----CCchHHHHHHHHhhcCC--ChH
Q 039062 75 KFELVQRWLSLDANVKTQIKTCLLNTLTST-VADARSTSSQVIAKVAGIELPQ-----KQWPELIVSLLSNVHQL--PAH 146 (871)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~-~~~vr~~~a~~l~~i~~~~~~~-----~~~~~ll~~L~~~l~~~--~~~ 146 (871)
...| ..+.+.|++.+.++ ++.+|..+..++..++....+. ...+.+++.+.+.+.++ +..
T Consensus 129 ----~~~w--------~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~ 196 (861)
T 2bpt_A 129 ----HGAW--------PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKA 196 (861)
T ss_dssp ----GTCC--------HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHH
T ss_pred ----cccc--------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHH
Confidence 0245 34667788888888 8899999999999998754231 13466788888888887 788
Q ss_pred HHHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHH-HHHHHH
Q 039062 147 VKQATLETLGYLCEEVSPDVVE-QDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERD-YIMRVV 224 (871)
Q Consensus 147 ~r~~al~~l~~l~~~~~~~~~~-~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~-~i~~~l 224 (871)
+|..++.++..++... .+.+. ....+.+++.+...+. ++++.+|..+++++..++...+..+. .+.. .+++.+
T Consensus 197 vr~~al~~l~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~--~~~~~~r~~a~~~l~~l~~~~~~~~~--~~l~~~l~~~~ 271 (861)
T 2bpt_A 197 VRLAALNALADSLIFI-KNNMEREGERNYLMQVVCEATQ--AEDIEVQAAAFGCLCKIMSKYYTFMK--PYMEQALYALT 271 (861)
T ss_dssp HHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHHHGGGCH--HHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHccChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 9999999999876544 22221 1123456777777776 78999999999999998876544332 2234 677777
Q ss_pred HHhhccCcHHHHHHHHHHHHHHHHHhHH-----------------hhHHhHHHHHHHHHHHhhCC-------ChhHHHHH
Q 039062 225 CEATQSAELKIRQAAFECLVSISSTYYE-----------------KLAPYMQDIYSITAKAVRED-------EEPVALQA 280 (871)
Q Consensus 225 ~~~l~~~~~~~~~~a~~~l~~l~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~-------~~~~~~~a 280 (871)
...+.+.++++|..++++|..+++.... ...+++..+++.++..+.+. +..++..|
T Consensus 272 ~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a 351 (861)
T 2bpt_A 272 IATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSA 351 (861)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHH
Confidence 7888889999999999999999876421 34566677888888777642 23688888
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHc
Q 039062 281 IEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTV 360 (871)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~ 360 (871)
..++..++... ....++.+++.+...+.. ..|..|.+|..+++.++...
T Consensus 352 ~~~L~~l~~~~----------------------~~~~~~~l~~~l~~~l~~---------~~~~~r~~a~~~l~~i~~~~ 400 (861)
T 2bpt_A 352 GACLQLFAQNC----------------------GNHILEPVLEFVEQNITA---------DNWRNREAAVMAFGSIMDGP 400 (861)
T ss_dssp HHHHHHHHHHH----------------------GGGGHHHHHHHHHHHTTC---------SSHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHc----------------------cHhHHHHHHHHHHHHcCC---------CChhHHHHHHHHHHHHHcCC
Confidence 88888877642 123345566666655531 12999999999999988655
Q ss_pred C-C---CcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhh--hHHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 039062 361 G-D---DIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKL--LHIVNVALSFMLSALTKDPNNHVKDTTAWTL 434 (871)
Q Consensus 361 ~-~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~--~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l 434 (871)
+ + ..++.+++.+...+.++++.+|.+++++++.+++... ..+ .++++.++|.++..+ .|+ +.||..+++++
T Consensus 401 ~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~~l~~l~~~l-~~~-~~v~~~a~~al 477 (861)
T 2bpt_A 401 DKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA-ESIDPQQHLPGVVQACLIGL-QDH-PKVATNCSWTI 477 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG-GGSCTTTTHHHHHHHHHHHH-TSC-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh-hhcCCHHHHHHHHHHHHHHh-ccC-hHHHHHHHHHH
Confidence 4 2 2345677888888899999999999999999988653 222 457888999999999 887 99999999999
Q ss_pred HHHhhhhccCCCCCCccchhhHHHHHHHHHHhcc--C-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHh
Q 039062 435 GRIFEFLHGSTIGTPIITQANCQQIITVLLQSMK--D-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTV 511 (871)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~--d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~ 511 (871)
+.+++.+... .+.....+++.+++.+++.+. | ++.||..++.++..++.... ....+|+..+++.++..
T Consensus 478 ~~l~~~~~~~---~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~-----~~~~~~~~~l~~~l~~~ 549 (861)
T 2bpt_A 478 INLVEQLAEA---TPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT-----DTVAETSASISTFVMDK 549 (861)
T ss_dssp HHHHHHHSSS---SSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC-----GGGHHHHHHHHHHHHHH
T ss_pred HHHHHhcccc---cchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc-----hhhHHHHHHHHHHHHHH
Confidence 9999876410 002235788999999999997 3 37899999999999988653 34678888888888777
Q ss_pred hccC--------C----hhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHH
Q 039062 512 THRE--------D----AGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGL 579 (871)
Q Consensus 512 l~~~--------~----~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 579 (871)
+.+. . .....+|..++.+++.++...+..+.++++.+++.+++.++... .+ .++..
T Consensus 550 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~-------~~-----~v~~~ 617 (861)
T 2bpt_A 550 LGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKD-------SA-----FIEDD 617 (861)
T ss_dssp HHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTT-------GG-----GTHHH
T ss_pred HHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCC-------CC-----cHHHH
Confidence 6532 0 11346788999999999999998889999999999999886531 10 24566
Q ss_pred HHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcC
Q 039062 580 LCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQN 659 (871)
Q Consensus 580 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~ 659 (871)
++.+++.++..++.. +.+|.+.+++.+...+++.+..+|..++.+++.++...|..+.+|++.++|.+...+.+
T Consensus 618 ~~~~l~~l~~~~~~~------~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 691 (861)
T 2bpt_A 618 VFYAISALAASLGKG------FEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISN 691 (861)
T ss_dssp HHHHHHHHHHHHGGG------GHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCC
Confidence 888999999998877 89999999999999998888889999999999999999999999999999999999986
Q ss_pred Cc-chhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCC---------CCcCCchHHHHHHHHHHhhc---cC
Q 039062 660 FE-EYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQL---------HRSVKPPIFSCFGDIALAIG---EN 726 (871)
Q Consensus 660 ~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~---------~~~v~~~~~~~l~~i~~~~~---~~ 726 (871)
.+ +.++|..++.+++.++..+++.+.+|++.+++.+.+.+..... ...+|..++.+++.++..+| ..
T Consensus 692 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~ 771 (861)
T 2bpt_A 692 PNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEA 771 (861)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred ccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 53 4689999999999999999999999999999999998875310 03478899999999999988 55
Q ss_pred hHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchH-HHHHHHHHHhcC-C
Q 039062 727 FEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAP-HILQFLDSMYME-K 804 (871)
Q Consensus 727 ~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~i~~~l~~~~~~-~ 804 (871)
|.+|++.+++.+...+.+. + .+|...+|..++.+++.++..++ ++.+.+|++ .+++.+++.++. .
T Consensus 772 ~~~~~~~i~~~l~~~~~d~--------~-~~~~~~vr~~a~~~l~~l~~~~~----g~~~~~~~~~~~~~~ll~~l~~~~ 838 (861)
T 2bpt_A 772 LFPYVGTIFQFIAQVAEDP--------Q-LYSEDATSRAAVGLIGDIAAMFP----DGSIKQFYGQDWVIDYIKRTRSGQ 838 (861)
T ss_dssp HGGGHHHHHHHHHHHHHCH--------H-HHTSHHHHHHHHHHHHHHHHHCT----TSTTGGGTTCHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHcCc--------c-cCCcHHHHHHHHHHHHHHHHHcC----CchHHHHHhcHHHHHHHHHHhhcc
Confidence 8899999999999887431 0 01136899999999999999872 234888888 889998887763 3
Q ss_pred CCCHHHHHHHHHHHHHHHhHh
Q 039062 805 DMDELVMKTAIGLLGDLADTL 825 (871)
Q Consensus 805 ~~~~~~r~~a~~~l~~i~~~~ 825 (871)
..+..++..+--.++.+.+.+
T Consensus 839 ~~~~~~~~~~~wa~~~~~~~~ 859 (861)
T 2bpt_A 839 LFSQATKDTARWAREQQKRQL 859 (861)
T ss_dssp SSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 456677777777777766543
No 15
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=5.2e-34 Score=330.74 Aligned_cols=747 Identities=15% Similarity=0.208 Sum_probs=493.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhcc
Q 039062 4 EVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWL 83 (871)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~ 83 (871)
.+.+++..+++|+++.|++|+++|++++++ |+++..+..++.+ +.++++|++|+.+|++.+++ .|.
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s--p~aw~~~~~iL~~-s~~~~vR~fAa~~L~~~I~~-----------~W~ 94 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEH--PDAWTRVDTILEF-SQNMNTKYYGLQILENVIKT-----------RWK 94 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCC--SCHHHHHTCC----CCSHHHHHHHHHHHHHHHHH-----------TGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcC--chHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHh-----------hhh
Confidence 678899999999999999999999999998 8888888888876 56899999999999999974 677
Q ss_pred CCCHHHHHHHHHHHHHhhcC---------CchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHH
Q 039062 84 SLDANVKTQIKTCLLNTLTS---------TVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLET 154 (871)
Q Consensus 84 ~~~~~~~~~i~~~ll~~l~~---------~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~ 154 (871)
.++++.+..+|+.++..+.. .++.++++++++++.+++.+|| ..||++++.+++.+.+ ++..+..++.+
T Consensus 95 ~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P-~~Wp~fi~dLv~~~~~-~~~~~~~~L~I 172 (1073)
T 3gjx_A 95 ILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWP-KHWPTFISDIVGASRT-SESLCQNNMVI 172 (1073)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhCh-hhccHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 89999999999999998753 2468889999999999999999 6999999999998864 45678889999
Q ss_pred HHHHhhccCCCc----cc-----------hhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHH
Q 039062 155 LGYLCEEVSPDV----VE-----------QDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDY 219 (871)
Q Consensus 155 l~~l~~~~~~~~----~~-----------~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ 219 (871)
|..+.++. .+. ++ ...++.+++.+...+.+ ..++.+...++++++.+++|.+-.... .+.
T Consensus 173 L~~L~EEV-~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~-~~~~~lv~~~L~~L~~~~sWI~i~~i~---~~~ 247 (1073)
T 3gjx_A 173 LKLLSEEV-FDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMEN-SQNAPLVHATLETLLRFLNWIPLGYIF---ETK 247 (1073)
T ss_dssp HHHHHHHH-TTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTTSCTHHHH---SSS
T ss_pred HHHHHHHH-HhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHhcCHHHhc---cch
Confidence 99999885 221 11 23456677777777764 567888899999999998887532211 123
Q ss_pred HHHHH-HHhhccCcHHHHHHHHHHHHHHHHH----hHHhhHH--------------------------------h-----
Q 039062 220 IMRVV-CEATQSAELKIRQAAFECLVSISST----YYEKLAP--------------------------------Y----- 257 (871)
Q Consensus 220 i~~~l-~~~l~~~~~~~~~~a~~~l~~l~~~----~~~~~~~--------------------------------~----- 257 (871)
+++.+ +..+. ++++|..|++||..++.. +...+.. +
T Consensus 248 ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~ 325 (1073)
T 3gjx_A 248 LISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLS 325 (1073)
T ss_dssp HHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHH
Confidence 55555 45553 567777888887777653 1111000 0
Q ss_pred -----------------------HHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhc---CCC-CC--CCCC
Q 039062 258 -----------------------MQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYG---SDF-TG--NSDI 308 (871)
Q Consensus 258 -----------------------~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~---~~~-~~--~~~~ 308 (871)
+...+++++.....++.++...++++|..+.+.-..-.+ +. ... .+ .++.
T Consensus 326 ~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~-~~~~~~~~~~~~~~~~~ 404 (1073)
T 3gjx_A 326 LFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESP-FSTSASPLLSGSQHFDI 404 (1073)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCC-SCCCCSSCTTSSCCSCS
T ss_pred HHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcc-ccccccccccccccccc
Confidence 001111222222346677888899999988775321100 00 000 00 0111
Q ss_pred -chhhhHHhhhhhhHHHHHHHHhcccCCc--ccccc-----------cccHhHHHHHHHHHHHHHcCCCcccchHHHHHh
Q 039062 309 -PCFYFIKQALPALVPLLLEILLKQEEDQ--DQEEG-----------AWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEE 374 (871)
Q Consensus 309 -~~~~~~~~~~~~l~~~l~~~l~~~~~d~--~~~~~-----------~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~ 374 (871)
..+....+++..+...+...|.+++|.- |+|++ +.+.++.-.+++..++...++.....+.+.+.+
T Consensus 405 ~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~ 484 (1073)
T 3gjx_A 405 PPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQN 484 (1073)
T ss_dssp CHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 1234566777888888888887655311 11111 113445566777777765566677778888876
Q ss_pred hhcC--CChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCC-----cHHHHHHHHHHHHHHhhhhccCCCC
Q 039062 375 NIAK--PDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDP-----NNHVKDTTAWTLGRIFEFLHGSTIG 447 (871)
Q Consensus 375 ~l~~--~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~-----~~~vr~~a~~~l~~~~~~~~~~~~~ 447 (871)
.++. .+|..++++++++|+++....++.-.++++.+++.++... ..+ .+.++...+|++|++.+|+.
T Consensus 485 ~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~-e~~~~kd~k~~vas~i~~vlgrY~~wl~----- 558 (1073)
T 3gjx_A 485 QVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLC-EQKRGKDNKAIIASNIMYIVGQYPRFLR----- 558 (1073)
T ss_dssp HHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH-HHSCSHHHHHHHHHHHHHHHHHCHHHHH-----
T ss_pred HhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccc-ccccccchhHHHHHHHHHHHhhhHHHHH-----
Confidence 6654 5799999999999999976643344578899999998877 544 45678888999999999995
Q ss_pred CCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCC---CCCCcchHHHHHHHHHHhhccCChhhhhHH
Q 039062 448 TPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGP---SSPLTPFFQEIVQSLLTVTHREDAGESRLR 523 (871)
Q Consensus 448 ~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~---~~~l~~~~~~il~~l~~~l~~~~~~~~~vr 523 (871)
.+..+++.++..+++.+.+ ++.|+..||.++..+++.|..... .....||+++++..+.....+.+ +.-.
T Consensus 559 ---~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~---~~~~ 632 (1073)
T 3gjx_A 559 ---AHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQ---PQQV 632 (1073)
T ss_dssp ---HCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCC---HHHH
T ss_pred ---hCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcC---HHHH
Confidence 3588999999999999987 799999999999999998876421 24567899999999888877764 2345
Q ss_pred HHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHHhhhc---cCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCch
Q 039062 524 TAAYETLNEVVRSSTDE--TAPMVLQLVPVIMMELHKTLEG---QKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTK 598 (871)
Q Consensus 524 ~~a~~~l~~l~~~~~~~--~~~~~~~ll~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 598 (871)
...+++++.+++..|.. ...++..++++..+.|+...+. ....-.|++... ....+++|...++..+|..
T Consensus 633 ~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~-~l~~il~~n~~v~~~~g~~---- 707 (1073)
T 3gjx_A 633 HTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVK-QLGSILKTNVRACKAVGHP---- 707 (1073)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHH-HHHHHHHHHHHHHHHHCGG----
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHH-HHHHHHhhhHHHHhhcchh----
Confidence 68999999999999964 4678999999999999876421 000011222222 3345788888999999987
Q ss_pred hhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHH
Q 039062 599 YVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICR 678 (871)
Q Consensus 599 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 678 (871)
|.+++..+++.+++..+. .-..++..+...|...... .+.+.++ .+|...+.++...+.
T Consensus 708 --f~~~~~~i~~~~l~~y~~--------~s~~i~~~v~~~g~~~~~~------~~~~~~r-----~ik~eil~l~~~~i~ 766 (1073)
T 3gjx_A 708 --FVIQLGRIYLDMLNVYKC--------LSENISAAIQANGEMVTKQ------PLIRSMR-----TVKRETLKLISGWVS 766 (1073)
T ss_dssp --GHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCGGGGSS------HHHHHHH-----HHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhCCchhhcc------HHHHHHH-----HHHHHHHHHHHHHHh
Confidence 888888888877765432 1112222222222211110 0111111 222223333333222
Q ss_pred Hhh---hcccccHHHHHHHHHHHccCCCCCCcCC-chHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChh
Q 039062 679 ALE---EKILPYCDGIMTQLLKDLSSNQLHRSVK-PPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDD 754 (871)
Q Consensus 679 ~~~---~~~~~~~~~i~~~l~~~l~~~~~~~~v~-~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~ 754 (871)
... .-...+++.+++.++.-.... .+..| ..++.+++.+...+|..+.++++.++..+.++--...+.+-.+
T Consensus 767 ~~~~~~~v~~~~i~pl~~~vl~dY~~~--~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~-- 842 (1073)
T 3gjx_A 767 RSNDPQMVAENFVPPLLDAVLIDYQRN--VPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEE-- 842 (1073)
T ss_dssp TCSCHHHHHHHTSHHHHHHTHHHHHHS--CGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSS--
T ss_pred cCCCHHHHHHHhHHHHHHHHHHHHhcC--CcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCccc--
Confidence 111 001123455666655555443 34444 4689999999999999999999999988776543322111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC---ccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhc
Q 039062 755 MTEYTNSLRNGILEAYSGIFQGFKNS---PKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLG 826 (871)
Q Consensus 755 ~~~~~~~~r~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~ 826 (871)
| .+.|..-.+.+..+.+..... .... .+..++..+.-.++. ..+++-..++.++-++...+.
T Consensus 843 ---~-Pe~r~~ff~ll~~~~~~~f~~l~~l~~~----~~~~~i~~i~wa~kh--~~r~i~~~~l~~~~~ll~~~~ 907 (1073)
T 3gjx_A 843 ---Y-PEHRTNFFLLLQAVNSHCFPAFLAIPPA----QFKLVLDSIIWAFKH--TMRNVADTGLQILFTLLQNVA 907 (1073)
T ss_dssp ---C-HHHHHHHHHHHHHHHHHCGGGTTTSCHH----HHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHT
T ss_pred ---C-cHHHHHHHHHHHHHHHHHhHHHHcCCHH----HHHHHHHHHHHHcCC--CChhHHHHHHHHHHHHHHHhh
Confidence 1 344544455555544442211 0111 223455555444554 467888888888888877654
No 16
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=2.7e-33 Score=345.85 Aligned_cols=695 Identities=14% Similarity=0.169 Sum_probs=513.2
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 039062 38 FLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIA 117 (871)
Q Consensus 38 ~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~ 117 (871)
.+..++..+.+ .+..+|.+|..-|.+.+... ...+++.....+...+++.|.++++.+|..++.+++
T Consensus 7 ~l~~lL~~l~s--~d~~~R~~A~~~L~~~l~~~-----------~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~ 73 (1230)
T 1u6g_C 7 HISNLLEKMTS--SDKDFRFMATNDLMTELQKD-----------SIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLG 73 (1230)
T ss_dssp HHHHHHHHTTC--SSHHHHHHHHHHHHHHTSSS-----------CCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--CCHhHHHHHHHHHHHHHccc-----------ccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 34455555654 47999999999888877532 224566667788889999999999999999999999
Q ss_pred HHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCc----cchhhHHHHHHHHHhhhcCCCCCHHHH
Q 039062 118 KVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDV----VEQDHVNKILTAVVQGMNASEMNNDVR 193 (871)
Q Consensus 118 ~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~----~~~~~~~~i~~~l~~~l~~~~~~~~vr 193 (871)
.++... +...++.+++.++..+.++++.+|.++..+++.++..+.++. +...+.+.+++.++..+.+ ++++.+|
T Consensus 74 ~l~~~~-~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~~~~~~ 151 (1230)
T 1u6g_C 74 PLVSKV-KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QEDVSVQ 151 (1230)
T ss_dssp HHHTTS-CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CSCHHHH
T ss_pred HHHHhC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CCchHHH
Confidence 999765 325778899999999999888999999999999998873321 1145688999999999973 3789999
Q ss_pred HHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhC-C
Q 039062 194 LAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVRE-D 272 (871)
Q Consensus 194 ~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~-~ 272 (871)
..|+.++..++...+..+.. +.+.+++.+...+.++++.+|..++.++..++...+..+ ++.+++.++..+.+ .
T Consensus 152 ~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~ 226 (1230)
T 1u6g_C 152 LEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKND 226 (1230)
T ss_dssp HHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhccCC
Confidence 99999999988654433322 347889999999999999999999999999997655432 22233444444433 2
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHH
Q 039062 273 EEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTC 352 (871)
Q Consensus 273 ~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~ 352 (871)
+...+..++++|..+++.. ...+.++++.++|.++..+.. ++ ..+|..+..+
T Consensus 227 ~~~~r~~a~~~l~~l~~~~-------------------~~~~~~~l~~l~~~ll~~l~d--~~-------~~vR~~a~~~ 278 (1230)
T 1u6g_C 227 SMSTTRTYIQCIAAISRQA-------------------GHRIGEYLEKIIPLVVKFCNV--DD-------DELREYCIQA 278 (1230)
T ss_dssp SSCSCTTHHHHHHHHHHHS-------------------SGGGTTSCTTHHHHHHHHHSS--CC-------TTTHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHHHhcC--CC-------HHHHHHHHHH
Confidence 3467778899998887742 123456778889988887752 11 3589999999
Q ss_pred HHHHHHHcCCCc---ccchHHHHHhhhc-------------------------------------CCChhhHHHHHHHHH
Q 039062 353 LGLVARTVGDDI---VPLVIPFIEENIA-------------------------------------KPDWRQREAATYAFG 392 (871)
Q Consensus 353 l~~l~~~~~~~~---~~~l~~~l~~~l~-------------------------------------~~~~~~r~~a~~~l~ 392 (871)
+..++..++..+ ++.+++.+...+. +..|++|.+|+.+++
T Consensus 279 l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~ 358 (1230)
T 1u6g_C 279 FESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLD 358 (1230)
T ss_dssp HHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHH
T ss_pred HHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHH
Confidence 999999888764 4455555543331 124899999999999
Q ss_pred HhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCC------------CCCccchhhHHHHH
Q 039062 393 SILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTI------------GTPIITQANCQQII 460 (871)
Q Consensus 393 ~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~------------~~~~~~~~~~~~il 460 (871)
.++... ++.+.++++.++|.+...+ .|+++.||..++.+++.+......... ........+++.++
T Consensus 359 ~l~~~~-~~~~~~~~~~l~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 436 (1230)
T 1u6g_C 359 AVVSTR-HEMLPEFYKTVSPALISRF-KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIV 436 (1230)
T ss_dssp HHHTTC-CTTHHHHHTTTHHHHHSTT-SCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHH
T ss_pred HHHHhc-hhHHHHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHH
Confidence 999865 4667889999999999999 999999999999999888875531000 00001134667778
Q ss_pred HHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCC
Q 039062 461 TVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTD 539 (871)
Q Consensus 461 ~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~ 539 (871)
+.+.+.+.+ ++++|.+++.++..++..+ +..+.+|++.+++.++..+.+... ...+|..++.+++.++...+.
T Consensus 437 ~~l~~~l~~~~~~vr~~~~~~L~~l~~~~-----~~~l~~~l~~ll~~l~~~L~d~~~-~~~v~~~a~~~l~~~~~~~~~ 510 (1230)
T 1u6g_C 437 KALHKQMKEKSVKTRQCCFNMLTELVNVL-----PGALTQHIPVLVPGIIFSLNDKSS-SSNLKIDALSCLYVILCNHSP 510 (1230)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHS-----TTTTGGGHHHHHHHHHHHTTCSSS-CHHHHHHHHHHHHHHHHSSCG
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHc-----hhhhHHHHHHHHHHHHHHHcCCCC-cchHHHHHHHHHHHHHHhCCH
Confidence 888887887 7899999999999998864 456789999999999999987643 347899999999999987765
Q ss_pred C-cHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCC-CchhhhhhhHHHHHHHHHHHH-
Q 039062 540 E-TAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSE-PTKYVFMQYADQIMGLFLRVF- 616 (871)
Q Consensus 540 ~-~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~i~~~l~~~l- 616 (871)
. +.+|++.++|.++..+.+.. ..++..++.++..+++.++... .....+.+|.+.+++.++..+
T Consensus 511 ~~~~~~l~~llp~L~~~l~d~~-------------~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 577 (1230)
T 1u6g_C 511 QVFHPHVQALVPPVVACVGDPF-------------YKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLK 577 (1230)
T ss_dssp GGGHHHHTTTHHHHHHHHTCSS-------------HHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHHHHHHHcccc-------------hHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHh
Confidence 4 88999999999998774321 2355668889999999988600 001128899999999999999
Q ss_pred -cccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh-hcccccHHHHHHH
Q 039062 617 -ACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE-EKILPYCDGIMTQ 694 (871)
Q Consensus 617 -~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~ 694 (871)
.+.+..+|..++.+++.++...|..+.++++.+++.+...+.+. ..|..++.+++.++.... .++.+|++.+++.
T Consensus 578 ~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e---~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~ 654 (1230)
T 1u6g_C 578 AADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE---ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPI 654 (1230)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS---SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccc---hhHHHHHHHHHHHHhCccccchHHHHHHHHHH
Confidence 55567899999999999999999999999999999999988754 467788888888765432 3577899999999
Q ss_pred HHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 039062 695 LLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIF 774 (871)
Q Consensus 695 l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~ 774 (871)
+...+.++ +..+|.+++.+++.++...+..+ ..+.+.+.+...+..- +++| ...+..+++++..++
T Consensus 655 L~~~l~~~--~~~~r~~a~~al~~l~~~~~~~~--~~~~v~~~l~~ll~ll-----~~~D-----~~~~~~~~~~L~~l~ 720 (1230)
T 1u6g_C 655 LASFLRKN--QRALKLGTLSALDILIKNYSDSL--TAAMIDAVLDELPPLI-----SESD-----MHVSQMAISFLTTLA 720 (1230)
T ss_dssp HHHHTTSC--CHHHHHHHHHHHHHHHHHCCTTC--CHHHHHHHHTTCGGGS-----CTTC-----HHHHHHHHHHHHHHT
T ss_pred HHHHHHhC--CHHHHHHHHHHHHHHHhcccccC--CHHHHHHHHHHHHhhc-----Ccch-----HHHHHHHHHHHHHHH
Confidence 99999877 67899999999999999998754 2233344443322221 0111 234557788888887
Q ss_pred hhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 039062 775 QGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLAD 823 (871)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~ 823 (871)
... ++.+.++.+.+++.+...+.............+.++..++.
T Consensus 721 ~~~-----~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 764 (1230)
T 1u6g_C 721 KVY-----PSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVV 764 (1230)
T ss_dssp TSC-----GGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHT
T ss_pred HhC-----chhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHh
Confidence 653 34455677788888888776533233333444444444443
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=6.2e-33 Score=317.08 Aligned_cols=573 Identities=13% Similarity=0.124 Sum_probs=443.4
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHH
Q 039062 94 KTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVN 173 (871)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 173 (871)
...++..+.++++.+|..+++.++.++....+...|+++++.|.+.. ++++.+|..+..+++.++....+ ..+..
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~----~~~~~ 86 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGG----PEYVH 86 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTS----GGGGG
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCc----HHHHH
Confidence 44688899999999999999999999876544457899999998876 66788999999999877665411 23566
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHh
Q 039062 174 KILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEK 253 (871)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 253 (871)
.+++.+...+. +++..+|..|.+++..+....+. ...++.+++.+..+..++++..|..++.++..++...+..
T Consensus 87 ~ll~~L~~l~~--~~~~~vR~~a~~~L~~l~~~~~~----~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~ 160 (588)
T 1b3u_A 87 CLLPPLESLAT--VEETVVRDKAVESLRAISHEHSP----SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA 160 (588)
T ss_dssp GGHHHHHHHTT--SSCHHHHHHHHHHHHHHHTTSCH----HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH
T ss_pred HHHHHHHHHHh--CchHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH
Confidence 77777777666 78999999999999998865432 2233567788878878888999999999999887654432
Q ss_pred hHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhccc
Q 039062 254 LAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQE 333 (871)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 333 (871)
..+.+++.+...+.++++.+|..|+..+..+++.. -.....+.++|.+...+..
T Consensus 161 ---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~---------------------~~~~~~~~l~~~l~~~~~d-- 214 (588)
T 1b3u_A 161 ---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL---------------------ELDNVKSEIIPMFSNLASD-- 214 (588)
T ss_dssp ---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS---------------------CHHHHHHTHHHHHHHHHTC--
T ss_pred ---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh---------------------cHHhHHHHHHHHHHHHhcC--
Confidence 34567777777888999999999999999887631 0112345567776665531
Q ss_pred CCcccccccccHhHHHHHHHHHHHHHcCC-CcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHH
Q 039062 334 EDQDQEEGAWNIAMAGGTCLGLVARTVGD-DIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALS 412 (871)
Q Consensus 334 ~d~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~ 412 (871)
+ +|.+|..|..++..++...++ ...+.++|.+...+.+++|.+|.+++.+++.++...+++ .+.+.+++
T Consensus 215 ~-------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~ 284 (588)
T 1b3u_A 215 E-------QDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE---ITKTDLVP 284 (588)
T ss_dssp S-------CHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH---HHHHTHHH
T ss_pred C-------cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc---cchhHHHH
Confidence 1 268999999999999998864 345678888888889999999999999999999865432 23467889
Q ss_pred HHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccC
Q 039062 413 FMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDV 491 (871)
Q Consensus 413 ~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~ 491 (871)
.+...+ +|+++.||..++++++.++...+.. .....+.+.++|.+...+.| ++.||..+++++..++..+.+.
T Consensus 285 ~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~-----~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 358 (588)
T 1b3u_A 285 AFQNLM-KDCEAEVRAAASHKVKEFCENLSAD-----CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 358 (588)
T ss_dssp HHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTT-----THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH
T ss_pred HHHHHh-CCCcHHHHHHHHHHHHHHHHHhChh-----hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 999999 9999999999999999999887521 11125678899999998887 7999999999999988765421
Q ss_pred CCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHH
Q 039062 492 GPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDERE 571 (871)
Q Consensus 492 ~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~ 571 (871)
...+.+++.+...+++. +..+|..++.+++.+....+.. .+.+.++|.+.+.+.+. +
T Consensus 359 -------~~~~~l~p~l~~~l~d~---~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~---------~-- 415 (588)
T 1b3u_A 359 -------NTIEHLLPLFLAQLKDE---CPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDA---------K-- 415 (588)
T ss_dssp -------HHHHHTHHHHHHHHTCS---CHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCS---------S--
T ss_pred -------HHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCC---------C--
Confidence 12455666677777655 4689999999999999887642 34567777777665321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHH
Q 039062 572 KQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYK 651 (871)
Q Consensus 572 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~ 651 (871)
.+++..++.++..++..++.+ + +.+.+++.+...+++.+..+|+.++.+++.++..+|..+ +++.++|
T Consensus 416 --~~vr~~~~~~l~~l~~~~~~~------~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp 483 (588)
T 1b3u_A 416 --WRVRLAIIEYMPLLAGQLGVE------F--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AHATIIP 483 (588)
T ss_dssp --HHHHHHHHHHHHHHHHHHCGG------G--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHH
T ss_pred --chHHHHHHHHHHHHHHHcCHH------H--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHH
Confidence 246777899999999988864 2 235688889999999888999999999999999988754 4688899
Q ss_pred HHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhH
Q 039062 652 YLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYL 731 (871)
Q Consensus 652 ~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~ 731 (871)
.+.....+ .++.+|..++.+++.++..++.. .|.+.+++.+.+.++++ ..++|..++.+++.++..+|..+..
T Consensus 484 ~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~~~~-- 556 (588)
T 1b3u_A 484 KVLAMSGD-PNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPILDNSTLQ-- 556 (588)
T ss_dssp HHHHTTTC-SCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGGSCHHHHH--
T ss_pred HHHHHhhC-CCHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCC--CchHHHHHHHHHHHHHHHhchhhhH--
Confidence 88877654 46799999999999999988754 36789999999999877 6889999999999999998876432
Q ss_pred HHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 039062 732 MYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIF 774 (871)
Q Consensus 732 ~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~ 774 (871)
+.++|.+.+.+. |.| ..+|..+..++..+-
T Consensus 557 ~~~~p~l~~l~~--------d~d-----~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 557 SEVKPILEKLTQ--------DQD-----VDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHTT--------CSS-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC--------CCc-----hhHHHHHHHHHHHhh
Confidence 567777776433 222 578888988887653
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=1.4e-31 Score=305.81 Aligned_cols=573 Identities=12% Similarity=0.114 Sum_probs=440.0
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhH
Q 039062 176 LTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLA 255 (871)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~ 255 (871)
+..++..+. ++++.+|..|++.+..+....+. ...++.+++.+.... ++++++|..+..++..+....+. .
T Consensus 12 i~~l~~~l~--s~~~~~R~~A~~~l~~i~~~~~~----~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~--~ 82 (588)
T 1b3u_A 12 IAVLIDELR--NEDVQLRLNSIKKLSTIALALGV----ERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGG--P 82 (588)
T ss_dssp HHHHHHHTT--CSCHHHHHHHHHTHHHHHHHSCH----HHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTS--G
T ss_pred HHHHHHHhh--cccHHHHHHHHHhHHHHHHHhCH----HHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCc--H
Confidence 456777888 78999999999999887643221 223456777777666 67889999999999877654322 1
Q ss_pred HhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCC
Q 039062 256 PYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEED 335 (871)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d 335 (871)
.+...+++.+.....+++..+|..|.+.+..+++... .... .+.++|.+..... ++
T Consensus 83 ~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~------------------~~~~---~~~l~~~l~~l~~---~~ 138 (588)
T 1b3u_A 83 EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS------------------PSDL---EAHFVPLVKRLAG---GD 138 (588)
T ss_dssp GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSC------------------HHHH---HHTHHHHHHHHHT---CS
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCC------------------HHHH---HHHHHHHHHHHhc---CC
Confidence 2334455555556678889999999999888866310 1111 2234555544332 11
Q ss_pred cccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHH
Q 039062 336 QDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFML 415 (871)
Q Consensus 336 ~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~ 415 (871)
.|..|..|..+++.++...+....+.+++.+...+.++++.+|.+++.+++.+++..+.+ .+.+.++|.+.
T Consensus 139 ------~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~ 209 (588)
T 1b3u_A 139 ------WFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFS 209 (588)
T ss_dssp ------SHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHH
T ss_pred ------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHH
Confidence 267899999999998887776677888999988889999999999999999999887532 34577889999
Q ss_pred HHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCC
Q 039062 416 SALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPS 494 (871)
Q Consensus 416 ~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~ 494 (871)
..+ +|+++.||..|+.+++.++...+ .....+.++|.+.+.+.| +|+||..++.+|..++..+.+
T Consensus 210 ~~~-~d~~~~vr~~a~~~l~~l~~~~~---------~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---- 275 (588)
T 1b3u_A 210 NLA-SDEQDSVRLLAVEACVNIAQLLP---------QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---- 275 (588)
T ss_dssp HHH-TCSCHHHHTTHHHHHHHHHHHSC---------HHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH----
T ss_pred HHh-cCCcHHHHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc----
Confidence 999 99999999999999999998764 134556788888888887 799999999999999876532
Q ss_pred CCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHhhhccCCChhhHHH
Q 039062 495 SPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETA--PMVLQLVPVIMMELHKTLEGQKLSSDEREK 572 (871)
Q Consensus 495 ~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~ 572 (871)
..+.+.+++.+...+++. +..+|..+..+++.++...+.... ++.+.++|.+...+++. +
T Consensus 276 ---~~~~~~l~~~l~~~l~d~---~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~---------~--- 337 (588)
T 1b3u_A 276 ---EITKTDLVPAFQNLMKDC---EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA---------N--- 337 (588)
T ss_dssp ---HHHHHTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS---------C---
T ss_pred ---ccchhHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC---------C---
Confidence 124556777777877765 458999999999999999886543 57788888887776432 1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHH
Q 039062 573 QGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKY 652 (871)
Q Consensus 573 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~ 652 (871)
..++..++.++..++..++.+ ...+.+++.+...+++.+..+|..++.+++.++...+.. .+.+.++|.
T Consensus 338 -~~vR~~a~~~l~~l~~~~~~~--------~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~ 406 (588)
T 1b3u_A 338 -QHVKSALASVIMGLSPILGKD--------NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSLLPA 406 (588)
T ss_dssp -HHHHHHHHTTGGGGHHHHCHH--------HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhhHh--------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHHHHH
Confidence 247778899999998888743 235678888889999888899999999999999887653 245678888
Q ss_pred HHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHH
Q 039062 653 LEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLM 732 (871)
Q Consensus 653 l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~ 732 (871)
+...+.+ .++.+|..++.+++.++..++..+ +.+.+++.+...+.++ +..+|..++.+++.++..+|..+ +.+
T Consensus 407 l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~~--~~~ 479 (588)
T 1b3u_A 407 IVELAED-AKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDH--VYAIREAATSNLKKLVEKFGKEW--AHA 479 (588)
T ss_dssp HHHHHTC-SSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHHHCHHH--HHH
T ss_pred HHHHhcC-CCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHhCchh--HHH
Confidence 8877765 477999999999999999888553 3467899999999877 68899999999999999998753 467
Q ss_pred HHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHH
Q 039062 733 YAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMK 812 (871)
Q Consensus 733 ~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~ 812 (871)
.++|.+.+..... ...+|..++.+++.+...++.. .|.+.+++.+...++| .+.++|.
T Consensus 480 ~llp~l~~~~~~~-------------~~~~R~~a~~~l~~l~~~~~~~-------~~~~~~~~~l~~~l~d--~~~~Vr~ 537 (588)
T 1b3u_A 480 TIIPKVLAMSGDP-------------NYLHRMTTLFCINVLSEVCGQD-------ITTKHMLPTVLRMAGD--PVANVRF 537 (588)
T ss_dssp HTHHHHHHTTTCS-------------CHHHHHHHHHHHHHHHHHHHHH-------HHHHHTHHHHHHGGGC--SCHHHHH
T ss_pred HHHHHHHHHhhCC-------------CHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHHhhCCC--CCchHHH
Confidence 7888877654321 2578999999999998875421 3677899999999886 4789999
Q ss_pred HHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHHHH
Q 039062 813 TAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINK 867 (871)
Q Consensus 813 ~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 867 (871)
.++.+++.++..+|.++.+ . .+.+.+..+..+.|.++|..|.+|+..|++
T Consensus 538 ~a~~~l~~l~~~~~~~~~~---~--~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 538 NVAKSLQKIGPILDNSTLQ---S--EVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp HHHHHHHHHGGGSCHHHHH---H--HHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhchhhhH---H--HHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 9999999999999876432 2 367778788888999999999999998764
No 19
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.97 E-value=6.9e-29 Score=299.38 Aligned_cols=508 Identities=14% Similarity=0.195 Sum_probs=351.8
Q ss_pred CccHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHH
Q 039062 1 MAMEVTQVLLNAQSI--DGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFEL 78 (871)
Q Consensus 1 ~~~~l~~~l~~~~s~--~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~ 78 (871)
|.+++.++++.+++| +++.|++|+++|++++++ |+++..+..++.+.+.+..+|++|+++||+.++
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~---------- 76 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CPICVPCGLRLAEKTQVAIVRHFGLQILEHVVK---------- 76 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--chHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH----------
Confidence 345688999999998 778899999999999988 556666666666557789999999999999986
Q ss_pred hhhccCCCHHHHHHHHHHHHHhhcC-------CchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHH
Q 039062 79 VQRWLSLDANVKTQIKTCLLNTLTS-------TVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQAT 151 (871)
Q Consensus 79 ~~~~~~~~~~~~~~i~~~ll~~l~~-------~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~a 151 (871)
..|..++++.+..||+.+++.+.+ +.+.||++++++++.|++.+|| +.||++++.|.+.+++ ++..++.+
T Consensus 77 -~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~ 153 (1204)
T 3a6p_A 77 -FRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELV 153 (1204)
T ss_dssp -HSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHH
T ss_pred -HhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHH
Confidence 467789999999999999998764 3479999999999999999999 7999999999998876 56778999
Q ss_pred HHHHHHHhhccC-CCccc-----------hhhHHHHHHHHHhhhcCC-----------------CCCHHHHHHHHHHHHH
Q 039062 152 LETLGYLCEEVS-PDVVE-----------QDHVNKILTAVVQGMNAS-----------------EMNNDVRLAATRALYN 202 (871)
Q Consensus 152 l~~l~~l~~~~~-~~~~~-----------~~~~~~i~~~l~~~l~~~-----------------~~~~~vr~~al~~l~~ 202 (871)
+.+|..++++.. .+... ..+++.+++.+.+.+... .++..++..+++++.+
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 999999988741 11110 223456666666655420 1235688889999998
Q ss_pred hhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHh--------------------------------
Q 039062 203 ALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTY-------------------------------- 250 (871)
Q Consensus 203 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-------------------------------- 250 (871)
++.+.+..+.... ...+++.++..+. ++++|..|++||..++..+
T Consensus 234 ~l~Wi~~~~i~~~-~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~ 310 (1204)
T 3a6p_A 234 YIDWVSMSHITAE-NCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGG 310 (1204)
T ss_dssp TTTTSCHHHHHTT-TSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCS
T ss_pred HHhccCHHHHHhc-cchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCC
Confidence 8877553221110 0234444444433 2345555555555555322
Q ss_pred -----------------------HHh--------hHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhc
Q 039062 251 -----------------------YEK--------LAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYG 299 (871)
Q Consensus 251 -----------------------~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~ 299 (871)
... ..+++..++++++..+.+++..+...++++|..+.+...
T Consensus 311 ~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~------- 383 (1204)
T 3a6p_A 311 LVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEI------- 383 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTT-------
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhccc-------
Confidence 110 112233455555555556666677777777776655310
Q ss_pred CCCCCCCCCchhhhHHhhhhhhHHHH---HHHHhcccCCc-----------cc--c--cccccHhHHHHHHHHHHHHHcC
Q 039062 300 SDFTGNSDIPCFYFIKQALPALVPLL---LEILLKQEEDQ-----------DQ--E--EGAWNIAMAGGTCLGLVARTVG 361 (871)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~l---~~~l~~~~~d~-----------~~--~--~~~~~~r~~a~~~l~~l~~~~~ 361 (871)
........++++.+++.+ +..+.+.+++. |+ | +.-|+.|+...+.+..++...+
T Consensus 384 --------~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p 455 (1204)
T 3a6p_A 384 --------LSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP 455 (1204)
T ss_dssp --------TTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred --------ccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 001134567778888888 33444433211 10 1 1236889999999999999887
Q ss_pred CCcccchHHHHHhhhc-------------------------CCChhhHHHHHHHHHHhhcCCChhhh-----h-HHHHHH
Q 039062 362 DDIVPLVIPFIEENIA-------------------------KPDWRQREAATYAFGSILEGPSPDKL-----L-HIVNVA 410 (871)
Q Consensus 362 ~~~~~~l~~~l~~~l~-------------------------~~~~~~r~~a~~~l~~l~~~~~~~~~-----~-~~l~~i 410 (871)
...++.+.+.+...+. ++.|...++....+.++++++. +.. . ..++.+
T Consensus 456 ~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~-~~~e~~~l~~~~~~~L 534 (1204)
T 3a6p_A 456 KTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMF-RTLNREEIPVNDGIEL 534 (1204)
T ss_dssp HHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHH-HHSCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHh-cccccccccHHHHHHH
Confidence 7766666666643322 2457788888888888877651 111 1 234455
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-------------ChHHHHHH
Q 039062 411 LSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-------------TPNVAEKA 477 (871)
Q Consensus 411 ~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-------------~~~v~~~a 477 (871)
++.++. + +..+|.+|...+.++|+++.++. ..+.+++.+++.++..+.+ +.+|+.+|
T Consensus 535 l~~ll~-~-~~~~p~l~~~~i~~l~~l~~~~~--------~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a 604 (1204)
T 3a6p_A 535 LQMVLN-F-DTKDPLILSCVLTNVSALFPFVT--------YRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHA 604 (1204)
T ss_dssp HHHHHH-C-CCSCHHHHHHHHHHHHHHGGGGG--------TCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHH
T ss_pred HHHHHh-C-CCCChHHHHHHHHHHHHHHHHHh--------cCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHH
Confidence 554332 2 34688899999999999999985 3467999999999988764 13789999
Q ss_pred HHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCC-hhhhhHHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH
Q 039062 478 CGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRED-AGESRLRTAAYETLNEVVRSST--DETAPMVLQLVPVIMM 554 (871)
Q Consensus 478 ~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~-~~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~ll~~l~~ 554 (871)
|.++..++..+ ++.+.||++.+...+...+.+.. . ...-+....++++.++...+ .....|+..+++++++
T Consensus 605 ~~al~~L~~~~-----~~~L~p~~~~i~~~~~~~l~~~~~l-~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~ 678 (1204)
T 3a6p_A 605 CSSIIKMCRDY-----PQLVLPNFDMLYNHVKQLLSNELLL-TQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVAS 678 (1204)
T ss_dssp HHHHHHHHHHC-----HHHHGGGHHHHHHHHHHHHHSTTTS-CHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHhCcccc-cHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999876 46788999999999988876543 2 23345678888888866644 2356679999999999
Q ss_pred HHHH
Q 039062 555 ELHK 558 (871)
Q Consensus 555 ~l~~ 558 (871)
.|.+
T Consensus 679 ~w~~ 682 (1204)
T 3a6p_A 679 IWLS 682 (1204)
T ss_dssp HHSC
T ss_pred HHcc
Confidence 9875
No 20
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.92 E-value=1.4e-21 Score=235.21 Aligned_cols=651 Identities=11% Similarity=0.076 Sum_probs=399.4
Q ss_pred hcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccC---hhh
Q 039062 140 VHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSN---DME 216 (871)
Q Consensus 140 l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~---~~~ 216 (871)
+.+++...|..|-..|..+-+ .+.....+...+.. +.+..+|..|..+|.+.+...-..+.. ...
T Consensus 16 ~~~~d~~~r~~A~~~L~~~~~-----------~p~~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 83 (971)
T 2x1g_F 16 FYRSNSQNQAITHEWLTDAEA-----------SPQAWQFSWQLMQL-GKSQEVQFFGAITLHSKLMKHWHEVPPENREEL 83 (971)
T ss_dssp HHTSTTTC----CHHHHHTTT-----------STHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHc-----------CHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHH
Confidence 445666677777777765322 12222334455543 578999999999999988643222221 123
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCC------ChhHHHHHHHHHHHHHHH
Q 039062 217 RDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVRED------EEPVALQAIEFWSSICDE 290 (871)
Q Consensus 217 ~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~a~~~~~~l~~~ 290 (871)
++.+++.+..... ....+|...+.++..++...+..|...++.++.. +++. ++..+..++.+|..++++
T Consensus 84 r~~ll~~l~~~~~-~~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~----~~~~~~~~~~~~~~~~~~l~iL~~l~EE 158 (971)
T 2x1g_F 84 KQKILESIVRFAG-GPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINT----FQNQRMPNVSADVQLWIMLEVLTAIPEE 158 (971)
T ss_dssp HHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHTTCC------HHHHH----HHHTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHccccccHHHHHHHHH----HhccccccCCCHHHHHHHHHHHHHhHHH
Confidence 4556666655443 3578999999999999987432566666666654 3332 456778889999999875
Q ss_pred HHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHH--cCCCcccch
Q 039062 291 EIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVART--VGDDIVPLV 368 (871)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~--~~~~~~~~l 368 (871)
.... . ...++ ......+...++.+++.+...+...+++. .+++.|.++..+.+|+...... .+....+.+
T Consensus 159 i~~~----~-~~~~r--~~~~~~l~~~~~~vl~ll~~~l~~~~~~~-~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~l 230 (971)
T 2x1g_F 159 AQVI----H-TSVKR--VVLRAEIAKRVQLVIHTVERYLKLQMNRV-WDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTI 230 (971)
T ss_dssp HHHC----C-CSSCH--HHHHHHHHTTHHHHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHH
T ss_pred Hhcc----C-cHHHH--HHHHHHHHHHHHHHHHHHHHHHhcccCCC-CCccchhHHHHHHHHHHHHHhhCCcCccccccH
Confidence 3211 0 00000 00123455566777777766665433221 1122467888899999887774 343333445
Q ss_pred HHHHHhhh----------------cCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHH-------HccCCCc--
Q 039062 369 IPFIEENI----------------AKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLS-------ALTKDPN-- 423 (871)
Q Consensus 369 ~~~l~~~l----------------~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~-------~l~~d~~-- 423 (871)
++.+.. + .+++...|++++.++..+.+........+.+..++|.++. .. .+.+
T Consensus 231 l~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~d~~ 308 (971)
T 2x1g_F 231 TAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTE-WKREND 308 (971)
T ss_dssp HHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHH-SSSSCS
T ss_pred HHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHH-hccccc
Confidence 555544 3 0135678999999999999853222233344444444433 33 3333
Q ss_pred -HHHHHHHHHHHHHHhhhhccCCC----CCCccchhhHHHHHHHHHHhcc------CChHHHHHHHHHHHHHHhhcccC-
Q 039062 424 -NHVKDTTAWTLGRIFEFLHGSTI----GTPIITQANCQQIITVLLQSMK------DTPNVAEKACGALYFLAQGYEDV- 491 (871)
Q Consensus 424 -~~vr~~a~~~l~~~~~~~~~~~~----~~~~~~~~~~~~il~~l~~~l~------d~~~v~~~a~~~l~~l~~~~~~~- 491 (871)
.......+..+..+++....... +.......++..+++.++.... +++.|...++..+..+++.+...
T Consensus 309 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~ 388 (971)
T 2x1g_F 309 NEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMS 388 (971)
T ss_dssp CSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcc
Confidence 25555666776666644321000 0000023566778888887652 35788889998888887633110
Q ss_pred ------CCCCCCcchHHHHHHHHHHhhccCChh------------hhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039062 492 ------GPSSPLTPFFQEIVQSLLTVTHREDAG------------ESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIM 553 (871)
Q Consensus 492 ------~~~~~l~~~~~~il~~l~~~l~~~~~~------------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~ 553 (871)
.....+.|++..+++.++..+..++.. -...|..+.+++..+....++ ..++.+++.+.
T Consensus 389 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~---~~l~~~~~~l~ 465 (971)
T 2x1g_F 389 NDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLND---YILEILAAMLD 465 (971)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT---HHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHH
Confidence 001334678888888888776433210 024677888888888877764 44445555554
Q ss_pred HHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHc--ccCcchhhhHHHHH
Q 039062 554 MELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFA--CRSATVHEEAMLAI 631 (871)
Q Consensus 554 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~--~~~~~~~~~a~~~l 631 (871)
+.+...... ..+ . ..+..++.+++.+++.+... ..++++.+++.+ ..+. +.++.+|..++.++
T Consensus 466 ~~l~~~~~~----~~~---w-~~~eaal~~l~~iae~~~~~------~~~~l~~l~~~l-~~l~~~d~~~~vr~~a~~~l 530 (971)
T 2x1g_F 466 EAIADLQRH----PTH---W-TKLEACIYSFQSVAEHFGGE------EKRQIPRLMRVL-AEIPYEKLNVKLLGTALETM 530 (971)
T ss_dssp HHHHHHHHC----TTC---C-HHHHHHHHHHHHTTTC------------CHHHHHHHHH-HHSCTTTSCHHHHHHHHHHH
T ss_pred HHHHhccCC----CCc---H-HHHHHHHHHHHHHHhhcChh------hhHHHHHHHHHH-HhcCccccCHHHHHHHHHHH
Confidence 444332100 011 1 23344777788887666544 346677777743 3334 34667999999999
Q ss_pred HHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCch
Q 039062 632 GALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPP 711 (871)
Q Consensus 632 ~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~ 711 (871)
++++..++... .|++.++|.++..+ + +.++..|+.++..+++.++..+.||++.++..+.+.++.++.+...+..
T Consensus 531 ~~~~~~l~~~~-~~l~~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~ 605 (971)
T 2x1g_F 531 GSYCNWLMENP-AYIPPAINLLVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVR 605 (971)
T ss_dssp HHTHHHHC-----CHHHHHHHHHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHH
T ss_pred HHHHHHHhcCH-HHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHH
Confidence 99998887544 78999999999988 3 5799999999999999999899999999999999999876446678899
Q ss_pred HHHHHHHHHHhhc-cChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCC---cc-----
Q 039062 712 IFSCFGDIALAIG-ENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNS---PK----- 782 (871)
Q Consensus 712 ~~~~l~~i~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~---~~----- 782 (871)
++.+++.++...+ +.+.+|+..+++.+.+.+....+....+++. ..-...++..++++++.++.. ..
T Consensus 606 ~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~----~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~ 681 (971)
T 2x1g_F 606 LMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAA----RIRTIFRLNMISTLFSSLNTDVDEQATDQPI 681 (971)
T ss_dssp HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHH----HHHHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhh----HHHHHHHHHHHHHHHhhcCCCcCcccccccC
Confidence 9999999999876 6678899988888887665432111102211 112234566667777766532 00
Q ss_pred ccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHH
Q 039062 783 TQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNEC 846 (871)
Q Consensus 783 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~ 846 (871)
...+.+|.+.+++.+..++.+...+.++.+.++.+++.++..+|.++.||++. ++..++...
T Consensus 682 ~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~--~~~~l~~~~ 743 (971)
T 2x1g_F 682 VQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQD--LCLFIVASF 743 (971)
T ss_dssp --CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHH--HHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHH--HHHHHHHHH
Confidence 24577889999999988886544578999999999999999999999999987 355444443
No 21
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.90 E-value=1e-19 Score=217.67 Aligned_cols=682 Identities=11% Similarity=0.071 Sum_probs=424.2
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCC--ChHHHHHHHHHHHHHhhccCC-----
Q 039062 92 QIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQL--PAHVKQATLETLGYLCEEVSP----- 164 (871)
Q Consensus 92 ~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~--~~~~r~~al~~l~~l~~~~~~----- 164 (871)
.+.+.|-. ..+++..+| |-+.+..+- .-|++...|.+.+.++ +..+|..|...|+..+...-.
T Consensus 6 ~l~~~L~~-~~spd~~~r--Ae~~L~~~~-------~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~ 75 (960)
T 1wa5_C 6 TVAKFLAE-SVIASTAKT--SERNLRQLE-------TQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGN 75 (960)
T ss_dssp HHHHHHHH-TTSGGGHHH--HHHHHHHHH-------TSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSC
T ss_pred HHHHHHHH-hcCCCHHHH--HHHHHHHhh-------cCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccC
Confidence 44444444 446677777 555555441 2245555666665443 567899999999987765311
Q ss_pred CccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 039062 165 DVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLV 244 (871)
Q Consensus 165 ~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~ 244 (871)
..++.+....|-..+++.+. +++..+|..+..++..++.. .+. ..|+.+++.+.+.++++++..+..++.++.
T Consensus 76 ~~l~~~~k~~ik~~ll~~l~--~~~~~ir~~l~~~ia~ia~~---d~p--~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~ 148 (960)
T 1wa5_C 76 HLLPANNVELIKKEIVPLMI--SLPNNLQVQIGEAISSIADS---DFP--DRWPTLLSDLASRLSNDDMVTNKGVLTVAH 148 (960)
T ss_dssp BSSCHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHH---HST--TTCTTHHHHHHTTCCSSCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHh---hCc--cchhHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 13444555666667777776 34589999999999887653 121 346889999999998888888999999999
Q ss_pred HHHHHhHH-------------hhHHhHHHHHHHHHH---HhhCCChh---HHHHHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 039062 245 SISSTYYE-------------KLAPYMQDIYSITAK---AVREDEEP---VALQAIEFWSSICDEEIDILEEYGSDFTGN 305 (871)
Q Consensus 245 ~l~~~~~~-------------~~~~~~~~l~~~~~~---~~~~~~~~---~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~ 305 (871)
.+++.+.. .+..+.+.+++++.. .+.+.... ++ .+++.+..+++.-..+.. . +
T Consensus 149 ~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~k~~~~l~~-~-----~- 220 (960)
T 1wa5_C 149 SIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLN-ILFDVLLVLIKLYYDFNC-Q-----D- 220 (960)
T ss_dssp HHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHH-HHHHHHHHHHHHHHHHHS-S-----C-
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHhh-c-----c-
Confidence 99875421 122233333343322 24433211 22 222222222221111100 0 0
Q ss_pred CCCchhhhHHhhhhhhHHHHHHHHhccc----CCccccc--ccccHhHHHHHHHHHHHHHcCCCccc---chHHHHHhhh
Q 039062 306 SDIPCFYFIKQALPALVPLLLEILLKQE----EDQDQEE--GAWNIAMAGGTCLGLVARTVGDDIVP---LVIPFIEENI 376 (871)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~----~d~~~~~--~~~~~r~~a~~~l~~l~~~~~~~~~~---~l~~~l~~~l 376 (871)
.+.+....+...++.+...+.... .|+|+++ ..|.+++.+.+++..+...+++.+.| .+++.+-+.+
T Consensus 221 ----~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l 296 (960)
T 1wa5_C 221 ----IPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLL 296 (960)
T ss_dssp ----CCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123445555666676666665421 1111111 22578888899999998887765433 3333333333
Q ss_pred c-----CCChhhHHHHHHHHHHhhcCCC-hhhhh--HHHHHHH-HHHHHHc----------cCCC------------cHH
Q 039062 377 A-----KPDWRQREAATYAFGSILEGPS-PDKLL--HIVNVAL-SFMLSAL----------TKDP------------NNH 425 (871)
Q Consensus 377 ~-----~~~~~~r~~a~~~l~~l~~~~~-~~~~~--~~l~~i~-~~l~~~l----------~~d~------------~~~ 425 (871)
. ..+-..+..++..+..+++... ...+. +++..++ +.+++.+ +.|+ ...
T Consensus 297 ~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s 376 (960)
T 1wa5_C 297 TSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDT 376 (960)
T ss_dssp HHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----C
T ss_pred HhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccC
Confidence 2 1233556667777777765421 12233 6777777 5666654 0111 124
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhcc-------CChHHHHHHHHHHHHHHhhccc-C-CCCC-
Q 039062 426 VKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMK-------DTPNVAEKACGALYFLAQGYED-V-GPSS- 495 (871)
Q Consensus 426 vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-------d~~~v~~~a~~~l~~l~~~~~~-~-~~~~- 495 (871)
+|.+|..++..++...+ ...++.+++.+.+.+. .+|+.+++|..+++.++++... . +...
T Consensus 377 ~R~aa~~~L~~l~~~~~----------~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~ 446 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNE----------VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSST 446 (960)
T ss_dssp HHHHHHHHHHHHHHHCH----------HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCB
T ss_pred cHHHHHHHHHHHHHHcc----------hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccc
Confidence 67788888888887764 3456667777666554 2689999999999999864311 0 0011
Q ss_pred -CCcchHHHH-HHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHH
Q 039062 496 -PLTPFFQEI-VQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQ 573 (871)
Q Consensus 496 -~l~~~~~~i-l~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~ 573 (871)
... .+.++ ...++..+.+++..++.+|..++.+++.+....+ .+++..+++.+++.+.+. +
T Consensus 447 ~~~~-~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~---------~---- 509 (960)
T 1wa5_C 447 NNLL-NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTD---------E---- 509 (960)
T ss_dssp CTTC-CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCS---------C----
T ss_pred cccc-cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCC---------C----
Confidence 111 23332 2334444444421156899999999999998763 467888888888776431 1
Q ss_pred HHHHHHHHHHHHHHHHHhC-----CCCCchhhhhhhHHHHHHHHHHHHcccC-----cchhhhHHHHHHHHHHHhhhhhh
Q 039062 574 GELQGLLCGCLQVIIQKLG-----SSEPTKYVFMQYADQIMGLFLRVFACRS-----ATVHEEAMLAIGALAYAAGLDFA 643 (871)
Q Consensus 574 ~~~~~~~~~~l~~l~~~~~-----~~~~~~~~~~~~~~~i~~~l~~~l~~~~-----~~~~~~a~~~l~~l~~~~~~~~~ 643 (871)
..++..++.++..++.... .....++.+.||++++++.++.+++... ....+.++.+++.++...++.+.
T Consensus 510 ~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~ 589 (960)
T 1wa5_C 510 YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQ 589 (960)
T ss_dssp HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTG
T ss_pred hhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhh
Confidence 2477889999998876432 0011234588999999999999998741 12457899999999999999999
Q ss_pred hhhHhHHHHHHhhhc----CCcchhHHHHHHHHHHHHHHHhh-hcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHH
Q 039062 644 KYMPDFYKYLEMGLQ----NFEEYQVCAVTVGVVGDICRALE-EKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGD 718 (871)
Q Consensus 644 ~~l~~i~~~l~~~l~----~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~ 718 (871)
||++.+++.+...+. +.++...+..++++++.+++..+ +.+.++.+.+++.+...++.. ..+..+.++..++.
T Consensus 590 p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~--~~~~~~~~~~i~~~ 667 (960)
T 1wa5_C 590 PLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED--IQEFIPYVFQIIAF 667 (960)
T ss_dssp GGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT--CTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhh--hHhhHHHHHHHHHH
Confidence 999999888776664 34566677778999999988744 456777889999999888765 45678889999999
Q ss_pred HHHhhccChHHhHHHHHHHHH--HHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHH
Q 039062 719 IALAIGENFEKYLMYAMPMLQ--SAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQF 796 (871)
Q Consensus 719 i~~~~~~~~~~~~~~i~~~l~--~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 796 (871)
+.... ..|.+|+..+++.+. ..+... . +. ..++..+..++...+ +.+.. ++.++..
T Consensus 668 l~~~~-~~~~~~~~~~~~~l~~~~~~~~~------~-----~~----~~~~~~L~~~~~~~~-----~~~~~-~~~~l~~ 725 (960)
T 1wa5_C 668 VVEQS-ATIPESIKPLAQPLLAPNVWELK------G-----NI----PAVTRLLKSFIKTDS-----SIFPD-LVPVLGI 725 (960)
T ss_dssp HHHHC-SSCCTTTGGGHHHHTSGGGGCCT------T-----TH----HHHHHHHHHHHHHHG-----GGCSC-SHHHHHH
T ss_pred HHHhc-cCCCHHHHHHHHHHcCHHHhcCC------C-----Cc----hhHHHHHHHHHHhCh-----HHHHH-HHHHHHH
Confidence 88877 668888888888877 444321 1 11 134444555544322 22332 3456666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHhHhccc-ccccccchHHHHHHHHHHHcCCChhhHHHHH
Q 039062 797 LDSMYMEKDMDELVMKTAIGLLGDLADTLGSN-AGSLIQQSLTSKDFLNECLSSKDHMIKESAE 859 (871)
Q Consensus 797 l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~-~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~ 859 (871)
+.+++.+. . ....++.++++++..+|++ +.||++. ++..++..+..+.....+....
T Consensus 726 ~~~~~~~~--~--~~~~a~~ll~~i~~~~~~~~~~~yl~~--i~~~l~~~l~~~~~~~~~~~~l 783 (960)
T 1wa5_C 726 FQRLIASK--A--YEVHGFDLLEHIMLLIDMNRLRPYIKQ--IAVLLLQRLQNSKTERYVKKLT 783 (960)
T ss_dssp HHHHHTCT--T--THHHHHHHHHHHHHHSCHHHHGGGHHH--HHHHHHHGGGSSCCHHHHHHHH
T ss_pred HHHHhCCC--c--ccchHHHHHHHHHHHCCHHHHHHHHHH--HHHHHHHHHhhCCcHhHHHHHH
Confidence 66666542 2 2388999999999999998 9999998 4666666666554555654443
No 22
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.89 E-value=3.9e-19 Score=214.29 Aligned_cols=653 Identities=12% Similarity=0.095 Sum_probs=407.0
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhc
Q 039062 131 ELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQAN 210 (871)
Q Consensus 131 ~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 210 (871)
.+...+.....++++..|..|-..|..+-+. |+ ..+.+...+.+ +.+..+|..|+..|.+.+...-..
T Consensus 25 ~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~--p~---------~~~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~ 92 (963)
T 2x19_B 25 NVEKALHQLYYDPNIENKNLAQKWLMQAQVS--PQ---------AWHFSWQLLQP-DKVPEIQYFGASALHIKISRYWSD 92 (963)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS--TT---------HHHHHHHHTST-TSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--HH---------HHHHHHHHhcC-CCchHHHHHHHHHHHHHHHhCHHh
Confidence 3333333335567888888888888775332 22 12233334443 578999999999999988643222
Q ss_pred ccC---hhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH-hHHhhHHhHHHHHHHHHHHhhC-----CChhHHHHHH
Q 039062 211 FSN---DMERDYIMRVVCEATQSAELKIRQAAFECLVSISST-YYEKLAPYMQDIYSITAKAVRE-----DEEPVALQAI 281 (871)
Q Consensus 211 ~~~---~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~a~ 281 (871)
+.. ...++.+++.+.+.- ...+.+|...+.++..++.. +|..|...++.+++ .+++ +++..+..++
T Consensus 93 l~~~~~~~ir~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~----~~~~~~~~~~~~~~~~~~l 167 (963)
T 2x19_B 93 IPTDQYESLKAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMPDAWPCAVADMVR----LFQAEDSPVDGQGRCLALL 167 (963)
T ss_dssp SCGGGHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHH----HHCC------CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHH----HHhhhccCCCcHHHHHHHH
Confidence 221 123344555554432 23588999999999999987 45567766666666 3433 2555677889
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcC
Q 039062 282 EFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVG 361 (871)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~ 361 (871)
.+|..+++...+.. . ....+.. .+..+...++.+++.+...+....++ . .++..+.+|+..... .+
T Consensus 168 ~iL~~l~ee~~~~~--~--~~~~r~~--~~~~l~~~~~~i~~ll~~~l~~~~~~------~-~~~~~~l~~l~~wi~-~~ 233 (963)
T 2x19_B 168 ELLTVLPEEFQTSR--L--PQYRKGL--VRTSLAVECGAVFPLLEQLLQQPSSP------S-CVRQKVLKCFSSWVQ-LE 233 (963)
T ss_dssp HHHHHHHHHHTTCC--C-------------CCSGGGHHHHHHHHHHHHSCTTCC------H-HHHHHHHHHHHHHHT-SS
T ss_pred HHHHhCHHHHhccc--C--cHHHHHH--HHHHHHHHHHHHHHHHHHHHhCCCCc------h-HHHHHHHHHHHHHHc-CC
Confidence 99999887532110 0 0000000 11233445666777766666432111 1 266667777765544 34
Q ss_pred CCcc--cchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHH-------HccCCCcHHHHHHHHH
Q 039062 362 DDIV--PLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLS-------ALTKDPNNHVKDTTAW 432 (871)
Q Consensus 362 ~~~~--~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~-------~l~~d~~~~vr~~a~~ 432 (871)
.... +.+++.+.+.+. +|..|.+++.++..+.....+....+.+..+++.++. .. .+.+.......+.
T Consensus 234 ~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~d~~~~~~~~~ 310 (963)
T 2x19_B 234 VPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAV-QNGDMETSHGICR 310 (963)
T ss_dssp CCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHH-HTTCHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHH-HCCCHHHHHHHHH
Confidence 3332 556666666653 6889999999999999864222234445555554443 22 2233344444556
Q ss_pred HHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC------ChHHHHHHHHHHHHHHhhcccC------CCCCCCcch
Q 039062 433 TLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD------TPNVAEKACGALYFLAQGYEDV------GPSSPLTPF 500 (871)
Q Consensus 433 ~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d------~~~v~~~a~~~l~~l~~~~~~~------~~~~~l~~~ 500 (871)
.+..+++........ .......+..+++.+++.... ++.+...++..+..+++..... .....+.|+
T Consensus 311 l~~~~~~~~~~~l~~-~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~ 389 (963)
T 2x19_B 311 IAVALGENHSRALLD-QVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPV 389 (963)
T ss_dssp HHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHc-CccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 666665543210000 000234566777777776652 3456666666556665532100 002334577
Q ss_pred HHHHHHHHHHhhccCChh-----------h-hhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChh
Q 039062 501 FQEIVQSLLTVTHREDAG-----------E-SRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSD 568 (871)
Q Consensus 501 ~~~il~~l~~~l~~~~~~-----------~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~ 568 (871)
+..+++.++..+..++.. + ...|..+.+++..+....+. +.++.+++.+.+.++.. .. ..
T Consensus 390 l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~---~~l~~~~~~l~~~l~~~----~~-~~ 461 (963)
T 2x19_B 390 YFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGA---ELLSNLYDKLGRLLTSS----EE-PY 461 (963)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTH---HHHHHHHHHHHHHHHTC----CC-SC
T ss_pred HHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccH---HHHHHHHHHHHHHHHhc----CC-CC
Confidence 888888888777543210 0 13466777777777766553 23333444443333221 00 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHh
Q 039062 569 EREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPD 648 (871)
Q Consensus 569 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ 648 (871)
+. ..+..++.+++.++..+... ..++++.+++.+..+ .++++.+|..++.+++.++..++... ++++.
T Consensus 462 ~w----~~~eaal~al~~i~~~~~~~------~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l~~ 529 (963)
T 2x19_B 462 SW----QHTEALLYGFQSIAETIDVN------YSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADHP-VMINS 529 (963)
T ss_dssp CH----HHHHHHHHHHHHHTTSCCSS------CCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCH-HHHTT
T ss_pred ch----HHHHHHHHHHHHHHhhcCch------hhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCH-HHHHH
Confidence 11 23445788888888776654 445666677744433 32456689999999999998876543 68999
Q ss_pred HHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhc-cCh
Q 039062 649 FYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG-ENF 727 (871)
Q Consensus 649 i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~-~~~ 727 (871)
+++.++..+.+ +.++..|+.++..+++.++..+.||++.++..+...+...+.+...+..++.+++.++...+ +.+
T Consensus 530 vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~ 606 (963)
T 2x19_B 530 VLPLVLHALGN---PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI 606 (963)
T ss_dssp THHHHHHHTTC---GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHhCC---chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999864 58999999999999999999999999999999999888654356788899999999998887 779
Q ss_pred HHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCc-----------------cccccccch
Q 039062 728 EKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSP-----------------KTQLLIPYA 790 (871)
Q Consensus 728 ~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~-----------------~~~~~~~~~ 790 (871)
.+|++.+++.+.+.+....+.. .+++ ....+...+++++.++..++... ....+.++.
T Consensus 607 ~~~~~~l~~~l~~~l~~~~~~~-~~~~----~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (963)
T 2x19_B 607 LKNLHSLISPYIQQLEKLAEEI-PNPS----NKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVL 681 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSC-SCHH----HHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCHH----HHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHH
Confidence 9999999999988776532111 1322 12334567788888888876420 112355678
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHc
Q 039062 791 PHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLS 848 (871)
Q Consensus 791 ~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~ 848 (871)
+.+++.+..++.....+.+++..++.+++.++..+|..+.||++. ++..++.....
T Consensus 682 ~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~--~~~~l~~~~~~ 737 (963)
T 2x19_B 682 QQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQ--LCEMLGRMYST 737 (963)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHH--HHHHHHHHHHc
Confidence 888888887775433467899999999999999999999999987 46666665554
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.85 E-value=3.1e-19 Score=196.85 Aligned_cols=420 Identities=16% Similarity=0.159 Sum_probs=294.3
Q ss_pred HHhhccCcHHHHHHHHHHHHHHHHH-hHHhhHHhHHHHHHHHHHHhhC--CChhHHHHHHHHHHHHHHHHHhhhh-hhcC
Q 039062 225 CEATQSAELKIRQAAFECLVSISST-YYEKLAPYMQDIYSITAKAVRE--DEEPVALQAIEFWSSICDEEIDILE-EYGS 300 (871)
Q Consensus 225 ~~~l~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~a~~~~~~l~~~~~~~~~-~~~~ 300 (871)
+..+.++|.++|..|-+.|..+... .+.++ ..+++ .+.+ .+..+|..|...+..+....-.... +..
T Consensus 7 L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~----~~L~~----il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~- 77 (462)
T 1ibr_B 7 LEKTVSPDRLELEAAQKFLERAAVENLPTFL----VELSR----VLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ- 77 (462)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHHHHHH----HHHHH----HHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH-
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhChHHHH----HHHHH----HHHcCCCChHHHHHHHHHHHHhccccchHHHHHHH-
Confidence 3445568999999999999886643 23222 22233 3333 4678888888777766532000000 000
Q ss_pred CCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHc-CCCcccchHHHHHhhhcCC
Q 039062 301 DFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTV-GDDIVPLVIPFIEENIAKP 379 (871)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~-~~~~~~~l~~~l~~~l~~~ 379 (871)
. .....-......+...+++.+.. ++ ..+ ..+..++..++... +...+|.+++.+.+.++++
T Consensus 78 ---~----~~~~l~~~~~~~ik~~ll~~l~~--~~-------~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~ 140 (462)
T 1ibr_B 78 ---Q----RWLAIDANARREVKNYVLQTLGT--ET-------YRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNP 140 (462)
T ss_dssp ---H----HHHTSCHHHHHHHHHHHHHHTTC--CC-------SSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCT
T ss_pred ---h----hhhcCCHHHHHHHHHHHHHHhCC--CC-------chh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccC
Confidence 0 00001111122334445554432 11 234 66788999998875 4457899999999999888
Q ss_pred --ChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCC--cHHHHHHHHHHHHHHhhhhccCCCCCCccchhh
Q 039062 380 --DWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDP--NNHVKDTTAWTLGRIFEFLHGSTIGTPIITQAN 455 (871)
Q Consensus 380 --~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 455 (871)
++..|++++.+++.+.+...++.+.++++.+++.+...+ .|+ ++.||..++++++.+....... ......
T Consensus 141 ~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l-~~~~~~~~vr~~a~~~l~~~~~~~~~~-----~~~~~~ 214 (462)
T 1ibr_B 141 NSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGM-RKEEPSNNVKLAATNALLNSLEFTKAN-----FDKESE 214 (462)
T ss_dssp TCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHH-STTCCCHHHHHHHHHHHHHHTTTTHHH-----HTSHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHh-----hhhhHH
Confidence 999999999999999986534667778889999999999 888 7999999999999877654311 001112
Q ss_pred HHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHH-HHHHHHHHhhccCChhhhhHHHHHHHHHHHH
Q 039062 456 CQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQ-EIVQSLLTVTHREDAGESRLRTAAYETLNEV 533 (871)
Q Consensus 456 ~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~-~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l 533 (871)
...+++.+.+.+.+ ++.+|..++.+|..+++.. ++.+.+|++ .+++.++..+.+. +..+|..++++++.+
T Consensus 215 ~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-----~~~~~~~~~~~l~~~~~~~~~~~---~~~v~~~a~~~l~~~ 286 (462)
T 1ibr_B 215 RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY-----YQYMETYMGPALFAITIEAMKSD---IDEVALQGIEFWSNV 286 (462)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC-----GGGCTTTTTTTHHHHHHHHHHCS---SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCC---chHHHHHHHHHHHHH
Confidence 23356776666665 7899999999999998865 345667777 8888877777655 457899999999999
Q ss_pred HHhc-------------------C--CCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhC
Q 039062 534 VRSS-------------------T--DETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLG 592 (871)
Q Consensus 534 ~~~~-------------------~--~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 592 (871)
+... . ..+.+++..++|.+++.+.+..+ ...+++ ..++..+..++..++..++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~--d~~~~~----~~~r~~a~~~L~~l~~~~~ 360 (462)
T 1ibr_B 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDE--NDDDDD----WNPCKAAGVCLMLLATCCE 360 (462)
T ss_dssp HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCS--SCCTTC----CSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhccc--cccccc----chHHHHHHHHHHHHHHhcc
Confidence 8763 1 12345678888888777643210 000111 1356678899999999988
Q ss_pred CCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhh-hhhhhhhHhHHHHHHhhhcCCcchhHHHHHHH
Q 039062 593 SSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAG-LDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVG 671 (871)
Q Consensus 593 ~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~ 671 (871)
.. ..+.+++.+...+++.++.+|+.++.+++.++.... ..+.++++.++|.+...+.+. ++.+|..|++
T Consensus 361 ~~---------~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~-~~~Vr~~a~~ 430 (462)
T 1ibr_B 361 DD---------IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAW 430 (462)
T ss_dssp TT---------HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS-CHHHHHHHHH
T ss_pred HH---------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 43 456788888899999999999999999999997655 456788999999999999876 4699999999
Q ss_pred HHHHHHHHhhhcc--cccHHHHHHHHHHHcc
Q 039062 672 VVGDICRALEEKI--LPYCDGIMTQLLKDLS 700 (871)
Q Consensus 672 ~l~~l~~~~~~~~--~~~~~~i~~~l~~~l~ 700 (871)
+++.++...+..+ .+|++.+++.|+..++
T Consensus 431 ~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 431 TVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 9999999998765 5899999999887654
No 24
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.83 E-value=6.6e-17 Score=181.18 Aligned_cols=685 Identities=11% Similarity=0.035 Sum_probs=425.5
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHhhCh-------HHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhH
Q 039062 5 VTQVLLNAQ--SIDGTVRKHAEESLKQFQEQNL-------PSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRK 75 (871)
Q Consensus 5 l~~~l~~~~--s~~~~~r~~A~~~L~~~~~~~~-------~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~ 75 (871)
+.+.++-+. +.+.+.|.+|-+.|-=+..++. .+-+..+..++.+ ..++++...|..+|-.+.+.+.+-..
T Consensus 8 v~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~-~~~~~~~~~~~r~~~~~~~~~~~r~~ 86 (810)
T 3now_A 8 VKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKV-EKDQDIYVNMVHLVAALCENSVERTK 86 (810)
T ss_dssp HHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhc-cCchhHHHHHHHHHHHHHhccHHHHH
Confidence 445555544 5688999999998843322210 1334556666664 45788888887777776654421100
Q ss_pred HHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCC-----------------CCchHHHHHHHH
Q 039062 76 FELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQ-----------------KQWPELIVSLLS 138 (871)
Q Consensus 76 ~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~-----------------~~~~~ll~~L~~ 138 (871)
..|..+. .+.+.+.+..+++.+...++.++..+....-+. .....++..|..
T Consensus 87 ----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 155 (810)
T 3now_A 87 ----GVLTELG-------VPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVY 155 (810)
T ss_dssp ----HHHHHSC-------HHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHH
T ss_pred ----HHHHHcC-------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHH
Confidence 1222222 335777888888888888888888876543210 012456777888
Q ss_pred hhcCC--ChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcC-CC--------CCHHHHHHHHHHHHHhhhcc
Q 039062 139 NVHQL--PAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNA-SE--------MNNDVRLAATRALYNALSFA 207 (871)
Q Consensus 139 ~l~~~--~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~--------~~~~vr~~al~~l~~~~~~~ 207 (871)
.+++. +...|.+++..+.+-+-.........-....=+..++..... ++ ...++|..|.-++..+.+-.
T Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~ 235 (810)
T 3now_A 156 SITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENM 235 (810)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTC
T ss_pred HhhccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHh
Confidence 88776 467899999998876543211111000001011222222221 11 25689999999999976543
Q ss_pred hhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhH--HHHHHHHHHHhhCCChhHHHHHHHHHH
Q 039062 208 QANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYM--QDIYSITAKAVREDEEPVALQAIEFWS 285 (871)
Q Consensus 208 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~a~~~~~ 285 (871)
...-..+.+.+.+-+.+...+..++.+-+..++.+++.++.-.++.-...+ .+.++.++..+.++++.++..|.+.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~ 315 (810)
T 3now_A 236 YYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLI 315 (810)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 211111112222333333445567778888999999998876555433333 256777777889999999999999998
Q ss_pred HHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcC-C--
Q 039062 286 SICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVG-D-- 362 (871)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~-~-- 362 (871)
..+.... +..++... . +|.|...+.. ++ ..+|..|..+|..++...+ +
T Consensus 316 ~aa~~~~-----------------~R~~I~~~--g-v~~L~~Ll~s--~~-------~~vr~~Al~~L~kl~s~~~~d~~ 366 (810)
T 3now_A 316 AASSKKD-----------------KAKALCEQ--G-VDILKRLYHS--KN-------DGIRVRALVGLCKLGSYGGQDAA 366 (810)
T ss_dssp HHTTSHH-----------------HHHTTHHH--H-HHHHHHHTTC--SC-------HHHHHHHHHHHHHHHTTTTTTTS
T ss_pred HHcCCcH-----------------HHHHHHHc--C-cHHHHHHHcC--CC-------HHHHHHHHHHHHHhccccccCcc
Confidence 8876531 11222221 1 3666665542 22 1467667778888875332 1
Q ss_pred -Cc-----ccchHHHHHhhhcCC--ChhhHHHHHHHHHHhhcCCChhhhhHHH--HHHHHHHHHHccCCCcHHHHHHHHH
Q 039062 363 -DI-----VPLVIPFIEENIAKP--DWRQREAATYAFGSILEGPSPDKLLHIV--NVALSFMLSALTKDPNNHVKDTTAW 432 (871)
Q Consensus 363 -~~-----~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~~~~~~~l--~~i~~~l~~~l~~d~~~~vr~~a~~ 432 (871)
.. +..+.+.+...+.++ +..+|+.++.+|..++... +.-.... ...+|.++..+ .++++.+++.+.+
T Consensus 367 ~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~--~vk~~lv~d~g~Ip~LV~LL-~s~d~~i~~~al~ 443 (810)
T 3now_A 367 IRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA--ECKEKLIEDKASIHALMDLA-RGGNQSCLYGVVT 443 (810)
T ss_dssp CCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSH--HHHHHHHHCHHHHHHHHHHH-HTTCGGGHHHHHH
T ss_pred ccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHccchHHHHHHHh-CCCChHHHHHHHH
Confidence 12 345577777888877 8899999999999998853 2222222 47899999999 8899999999999
Q ss_pred HHHHHhhhhccC--CC----------C-----CCccchhhHH---------HHHHHHHHhccC-ChHHHHHHHHHHHHHH
Q 039062 433 TLGRIFEFLHGS--TI----------G-----TPIITQANCQ---------QIITVLLQSMKD-TPNVAEKACGALYFLA 485 (871)
Q Consensus 433 ~l~~~~~~~~~~--~~----------~-----~~~~~~~~~~---------~il~~l~~~l~d-~~~v~~~a~~~l~~l~ 485 (871)
+|++++...... .+ + .+....++.. ..+|.|++.+.. ++.+++.|+|+|.+++
T Consensus 444 ~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA 523 (810)
T 3now_A 444 TFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC 523 (810)
T ss_dssp HHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 999999754210 00 0 0000001111 468999999886 7899999999999997
Q ss_pred hhcccCCCCCCCcchH--HHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCC--cH-HHHHHHHHHHHHHHHHhh
Q 039062 486 QGYEDVGPSSPLTPFF--QEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDE--TA-PMVLQLVPVIMMELHKTL 560 (871)
Q Consensus 486 ~~~~~~~~~~~l~~~~--~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~--~~-~~~~~ll~~l~~~l~~~~ 560 (871)
..- + ....+ ...++.|+..+.+.+ ...|..|..+|+.++...... +. ......+|+|++.+...
T Consensus 524 ~d~------~-~r~~Vv~~Gaip~Lv~LL~s~~---~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~- 592 (810)
T 3now_A 524 GLK------E-LRGKVVQEGGVKALLRMALEGT---EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD- 592 (810)
T ss_dssp TSH------H-HHHHHHHTTHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT-
T ss_pred CCH------H-HHHHHHHCCCHHHHHHHHccCC---HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCC-
Confidence 421 1 11111 234666777776653 467899999999998765421 11 12345788888877421
Q ss_pred hccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhH-HHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhh
Q 039062 561 EGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYA-DQIMGLFLRVFACRSATVHEEAMLAIGALAYAAG 639 (871)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 639 (871)
.+. ..+..++.+|.+++..-. + .-.... ...++.+..++.+.+..+++.|+.+++.++..-
T Consensus 593 -------~~~----l~~~eAl~AL~NLa~~~d-~-----~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~- 654 (810)
T 3now_A 593 -------CTA----LENFESLMALTNLASMNE-S-----VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE- 654 (810)
T ss_dssp -------SCH----HHHHHHHHHHHHHTTSCH-H-----HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH-
T ss_pred -------CcH----HHHHHHHHHHHHHhcCCH-H-----HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-
Confidence 111 112347778887764210 0 011111 246788999999888899999999999998633
Q ss_pred hhhhhhh--HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccH--HHHHHHHHHHccCCCCCCcCCchHHHH
Q 039062 640 LDFAKYM--PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYC--DGIMTQLLKDLSSNQLHRSVKPPIFSC 715 (871)
Q Consensus 640 ~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~~~~~~~ 715 (871)
+....+. ...++.|+..+... +..++..|+++|+.++..........+ ...++.|++++.++ +.+++..++++
T Consensus 655 ~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~--d~~vq~~A~~a 731 (810)
T 3now_A 655 DVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP--SPAVQHRGIVI 731 (810)
T ss_dssp HHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS--SHHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC--CHHHHHHHHHH
Confidence 2333344 35888898888765 558999999999999875333222222 36788999999887 78899999999
Q ss_pred HHHHHHhhccChHHhHH--HHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 039062 716 FGDIALAIGENFEKYLM--YAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQG 776 (871)
Q Consensus 716 l~~i~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~ 776 (871)
+++++...+ ....++- ..++.|.+.+... |.. ...+++.+++++..++..
T Consensus 732 L~NL~~~s~-e~~~~l~e~G~i~~L~~LL~~~------d~~----~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 732 ILNMINAGE-EIAKKLFETDIMELLSGLGQLP------DDT----RAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHHHTTCH-HHHHHHHTSTHHHHHTTSCCCT------TST----THHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCH-HHHHHHHHCCCHHHHHHHHhCc------ccC----cHHHHHHHHHHHHHHHhC
Confidence 999987432 2233322 3566666655432 110 246677788888777654
No 25
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.81 E-value=4.6e-17 Score=183.01 Aligned_cols=512 Identities=12% Similarity=0.098 Sum_probs=345.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhh
Q 039062 4 EVTQVLLNAQSIDGTVRKHAEESLKQFQE--QNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQR 81 (871)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~A~~~L~~~~~--~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~ 81 (871)
++.++-+.+.++|...|+.|-+.+--+.. .+.+.+...+.+.+. +.+..+|+++...+....+.
T Consensus 14 e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~--s~~~~~Krl~yl~l~~~~~~------------ 79 (591)
T 2vgl_B 14 EIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQ--TDNLELKKLVYLYLMNYAKS------------ 79 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTS--SSCHHHHHHHHHHHHHHHHH------------
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccc------------
Confidence 45666677888999999988888864433 344555666667555 45789999999999876531
Q ss_pred ccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhc
Q 039062 82 WLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEE 161 (871)
Q Consensus 82 ~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~ 161 (871)
.++....+.+.+.+-|.++++.+|..|..+++.+. .+ ..++.+++.+.+++.++++.+|..|..++..++..
T Consensus 80 ----~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~-~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~ 151 (591)
T 2vgl_B 80 ----QPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VD-KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI 151 (591)
T ss_dssp ----SHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SG-GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS
T ss_pred ----CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hH-HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh
Confidence 23444445677778899999999988877776664 23 47788999999999999999999999999999986
Q ss_pred cCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHH
Q 039062 162 VSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFE 241 (871)
Q Consensus 162 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~ 241 (871)
. |+.+ .. ..+++.+...+. |+++.|+.+|+.++..+....+.... .......+..+...+.+.++..+...++
T Consensus 152 ~-p~~~-~~--~~~~~~l~~lL~--d~d~~V~~~A~~aL~~i~~~~~~~~~-~~l~~~~~~~Ll~~l~~~~~~~q~~il~ 224 (591)
T 2vgl_B 152 N-AQMV-ED--QGFLDSLRDLIA--DSNPMVVANAVAALSEISESHPNSNL-LDLNPQNINKLLTALNECTEWGQIFILD 224 (591)
T ss_dssp S-CCCH-HH--HHHHHHHHHTTS--CSCHHHHHHHHHHHHHHTTSCCSCCS-CCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred C-hhhc-cc--ccHHHHHHHHhC--CCChhHHHHHHHHHHHHHhhCCCccc-hhccHHHHHHHHHcCCCCCchHHHHHHH
Confidence 6 6654 21 467888889998 89999999999999997654332200 0112344555556566677877777777
Q ss_pred HHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhh
Q 039062 242 CLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPAL 321 (871)
Q Consensus 242 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 321 (871)
++..+.... .+....+++.+...+++.+..++..|+.++..+.... + + .....+.....+
T Consensus 225 ~l~~l~~~~----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~------------~-~---~~~~~~~~~~~~ 284 (591)
T 2vgl_B 225 CLSNYNPKD----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELL------------P-K---DSDYYNMLLKKL 284 (591)
T ss_dssp HHHTSCCCS----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSC------------C-B---TTBSHHHHHHHT
T ss_pred HHHHhCCCC----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcc------------C-C---CHHHHHHHHHHH
Confidence 665443211 1234456777777788888999999999887764310 0 0 012344444556
Q ss_pred HHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChh
Q 039062 322 VPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPD 401 (871)
Q Consensus 322 ~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~ 401 (871)
.+.++..+. .| .++|..|..++..++...++.+.+.+..++ ...+.++.+|..++..+..++....
T Consensus 285 ~~~L~~L~~---~d-------~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~--~~~~d~~~Ir~~al~~L~~l~~~~n-- 350 (591)
T 2vgl_B 285 APPLVTLLS---GE-------PEVQYVALRNINLIVQKRPEILKQEIKVFF--VKYNDPIYVKLEKLDIMIRLASQAN-- 350 (591)
T ss_dssp HHHHHHHTT---SC-------HHHHHHHHHHHHHHHHHCCSTTTTCTTTTS--CCTTSCHHHHHHHHHHHHHTCCSST--
T ss_pred HHHHHHHhc---CC-------ccHHHHHHHHHHHHHHhChHHHHHHHHhhe--eccCChHHHHHHHHHHHHHHCChhh--
Confidence 666664332 22 378999999999999887765544433322 2224449999999999999876432
Q ss_pred hhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHH
Q 039062 402 KLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGA 480 (871)
Q Consensus 402 ~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~ 480 (871)
+..+++.+...+ .+.++.+|..++++++.++..++ .....+++.+++.+.+ ...|+..++.+
T Consensus 351 -----v~~iv~~L~~~l-~~~d~~~r~~~v~aI~~la~~~~-----------~~~~~~v~~Ll~ll~~~~~~v~~e~i~~ 413 (591)
T 2vgl_B 351 -----IAQVLAELKEYA-TEVDVDFVRKAVRAIGRCAIKVE-----------QSAERCVSTLLDLIQTKVNYVVQEAIVV 413 (591)
T ss_dssp -----HHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhCh-----------hHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence 355778888899 99999999999999999997763 2346788888888886 67788888888
Q ss_pred HHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhh
Q 039062 481 LYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTL 560 (871)
Q Consensus 481 l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~ 560 (871)
+..++....+ .. +.++..+...+.+.. ++.+|..+++++|.+....+. ...++..+.+.+.
T Consensus 414 l~~ii~~~p~-----~~----~~~v~~L~~~l~~~~--~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~~--- 474 (591)
T 2vgl_B 414 IRDIFRKYPN-----KY----ESIIATLCENLDSLD--EPDARAAMIWIVGEYAERIDN-----ADELLESFLEGFH--- 474 (591)
T ss_dssp HHHHHHHSCS-----SC----CTTHHHHHHTTTTCC--SHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTCS---
T ss_pred HHHHHHHCcc-----hH----HHHHHHHHHHHHhcc--CHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhhc---
Confidence 8888775432 11 223445555555433 457788888888888766543 1233333332221
Q ss_pred hccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHH-cc-cCcchhhhHHHHHHHH
Q 039062 561 EGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVF-AC-RSATVHEEAMLAIGAL 634 (871)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l-~~-~~~~~~~~a~~~l~~l 634 (871)
.++ ..++..++.++..+....+.. . .+.+..++... .+ .+.++|+.|...+.-+
T Consensus 475 ------~~~----~~vr~~~l~a~~Kl~~~~p~~------~----~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 475 ------DES----TQVQLTLLTAIVKLFLKKPSE------T----QELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp ------SSC----HHHHHHHHHHHHHHHTTCCST------T----HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred ------cCC----HHHHHHHHHHHHHHHhcCchH------H----HHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 111 146666777777776554432 1 23444444443 34 4668999998776655
No 26
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.81 E-value=1.3e-15 Score=170.67 Aligned_cols=660 Identities=10% Similarity=0.046 Sum_probs=410.8
Q ss_pred HHHHHhhc--CCChHHHHHHHHHHHHHhhccCC-CccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhc
Q 039062 134 VSLLSNVH--QLPAHVKQATLETLGYLCEEVSP-DVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQAN 210 (871)
Q Consensus 134 ~~L~~~l~--~~~~~~r~~al~~l~~l~~~~~~-~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 210 (871)
..+++.+- +.+.+.|+.|+.=|-.++.+-.+ +.+ .-..-+..+.+.+.+ ..++++..+|++++..+.......
T Consensus 9 ~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i---~~~~~~~~~~~l~~~-~~~~~~~~~~~r~~~~~~~~~~~r 84 (810)
T 3now_A 9 KQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELL---YKDHCIAKVASLTKV-EKDQDIYVNMVHLVAALCENSVER 84 (810)
T ss_dssp HHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHH---HHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcccccCHHHHHHHHhhceeeeccccchHHH---HhCchHHHHHHHHhc-cCchhHHHHHHHHHHHHHhccHHH
Confidence 44444443 34556788888888777765311 111 112224455566652 488999999999999987643211
Q ss_pred ccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHH------------hhH---HhHHHHHHHHHHHhhCC--C
Q 039062 211 FSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYE------------KLA---PYMQDIYSITAKAVRED--E 273 (871)
Q Consensus 211 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~------------~~~---~~~~~l~~~~~~~~~~~--~ 273 (871)
.. ......-++-+.+.+..++++.-.+++.++..+...... ... ..+..++..++..+.+. .
T Consensus 85 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (810)
T 3now_A 85 TK-GVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTIS 163 (810)
T ss_dssp HH-HHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSC
T ss_pred HH-HHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccC
Confidence 00 000011144456667777888888888888888766321 111 22345566666666653 4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchh-hhHHhhhhhhHHHHHHHHhcccCC--cccccccccHhHHHH
Q 039062 274 EPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCF-YFIKQALPALVPLLLEILLKQEED--QDQEEGAWNIAMAGG 350 (871)
Q Consensus 274 ~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~l~~~~~d--~~~~~~~~~~r~~a~ 350 (871)
...|-.+++.+..-+... ..... .+... .=+..+++.-...++- +..-.-.-+.|..+.
T Consensus 164 ~~~r~~~~~~~~~~~~~~---------------~~~~~~~~~~~---~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~ 225 (810)
T 3now_A 164 GAARDGVIELITRNVHYT---------------ALEWAERLVEI---RGLCRLLDVCSELEDYKYESAMDITGSSSTIAS 225 (810)
T ss_dssp HHHHHHHHHHHHHHTTCT---------------TTTHHHHHHHT---THHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHH
T ss_pred hhhHHHHHHHHHHhCCcc---------------ccccccchhhH---hhHHHHHHHHhcCccccccccCCCChhHHHHHH
Confidence 467777888765544211 00000 11110 0122223332322221 110011236788888
Q ss_pred HHHHHHHHHcC-----CCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH--HHHHHHHHHHccCCCc
Q 039062 351 TCLGLVARTVG-----DDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV--NVALSFMLSALTKDPN 423 (871)
Q Consensus 351 ~~l~~l~~~~~-----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l--~~i~~~l~~~l~~d~~ 423 (871)
-|+.++.+... +.+-..+-.|+...+..++...+-.|++++..+..+. ++.-...+ ...++.++..+ .+++
T Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~-~~~~~~~~~~~G~v~~li~Ll-~s~~ 303 (810)
T 3now_A 226 VCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGP-LDVGNQVVAREGILQMILAMA-TTDD 303 (810)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSS-HHHHHHHHHTTTHHHHHHHHH-HSSC
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCC-HHHHHHHHhccchHHHHHHHh-CCCC
Confidence 99999988876 3344566777877887888888888999999999986 45433333 37889999999 9999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCc-chH
Q 039062 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLT-PFF 501 (871)
Q Consensus 424 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~-~~~ 501 (871)
+.++..|+|+++..+.... ........-+|.|...+.+ ++.+|..|.++|..+............+. .-+
T Consensus 304 ~~~q~~A~~al~~aa~~~~--------~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i 375 (810)
T 3now_A 304 ELQQRVACECLIAASSKKD--------KAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAA 375 (810)
T ss_dssp HHHHHHHHHHHHHHTTSHH--------HHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHH
T ss_pred HHHHHHHHHHHHHHcCCcH--------HHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccH
Confidence 9999999999999877632 1222333334888888875 67889988888888764221110012222 236
Q ss_pred HHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHH
Q 039062 502 QEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPM-VLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLL 580 (871)
Q Consensus 502 ~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 580 (871)
+++++.+...+.++.. +..+|..++++|..+.........-. -..++|.+++.+... + + .++..+
T Consensus 376 ~~Lv~~l~~lL~~~~~-d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~--------d-~----~i~~~a 441 (810)
T 3now_A 376 LKLAEACRRFLIKPGK-DKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGG--------N-Q----SCLYGV 441 (810)
T ss_dssp HHHHHHHHHHHHCSSC-CSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTT--------C-G----GGHHHH
T ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCC--------C-h----HHHHHH
Confidence 7888888888877621 35789999999999987654221111 157888888888642 1 1 244558
Q ss_pred HHHHHHHHHHhCCCC-------------------Cchh---hh----hhh-HHHHHHHHHHHHcccCcchhhhHHHHHHH
Q 039062 581 CGCLQVIIQKLGSSE-------------------PTKY---VF----MQY-ADQIMGLFLRVFACRSATVHEEAMLAIGA 633 (871)
Q Consensus 581 ~~~l~~l~~~~~~~~-------------------~~~~---~~----~~~-~~~i~~~l~~~l~~~~~~~~~~a~~~l~~ 633 (871)
.+++.+++....... .+.+ .. ... -...++.+..++.++++.+++.|..+|+.
T Consensus 442 l~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~N 521 (810)
T 3now_A 442 VTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNA 521 (810)
T ss_dssp HHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 888888876331110 0000 00 011 12568999999999899999999999999
Q ss_pred HHHHhhhhhhhhh--HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhc--ccc-cHHHHHHHHHHHccCCCCCCcC
Q 039062 634 LAYAAGLDFAKYM--PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEK--ILP-YCDGIMTQLLKDLSSNQLHRSV 708 (871)
Q Consensus 634 l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~--~~~-~~~~i~~~l~~~l~~~~~~~~v 708 (871)
++.. ......+ ...+|.|+..+.+.+ ...+..|.++|++++...... +.. .....++.|++++.++. +...
T Consensus 522 LA~d--~~~r~~Vv~~Gaip~Lv~LL~s~~-~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~-~~l~ 597 (810)
T 3now_A 522 VCGL--KELRGKVVQEGGVKALLRMALEGT-EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDC-TALE 597 (810)
T ss_dssp HHTS--HHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTS-CHHH
T ss_pred HcCC--HHHHHHHHHCCCHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCC-cHHH
Confidence 9843 2233333 347888888887654 478999999999998764422 111 12457889999987541 2223
Q ss_pred CchHHHHHHHHHHhhccChHHhHH-HHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccc
Q 039062 709 KPPIFSCFGDIALAIGENFEKYLM-YAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLI 787 (871)
Q Consensus 709 ~~~~~~~l~~i~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~ 787 (871)
+..++.++..++......-...++ ..+|.+.+.+... + ..+|+.++.+++.++..- +...
T Consensus 598 ~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~------~-------~~Vq~~A~~~L~NLa~~~------~~~~ 658 (810)
T 3now_A 598 NFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED------H-------LYLTRAAAQCLCNLVMSE------DVIK 658 (810)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC------C-------TTHHHHHHHHHHHHTTSH------HHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC------C-------HHHHHHHHHHHHHHhCCh------HHHH
Confidence 357899999988754221111122 3567777776553 2 457889999999887641 1222
Q ss_pred cch--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHH
Q 039062 788 PYA--PHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAI 865 (871)
Q Consensus 788 ~~~--~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 865 (871)
.++ ...++.+..++.. .+.++++.|..+++.++...+......+.+..++++++..+. +.|.+++..|.||+..|
T Consensus 659 ~~v~~~g~l~~Lv~LL~s--~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~-s~d~~vq~~A~~aL~NL 735 (810)
T 3now_A 659 MFEGNNDRVKFLALLCED--EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA-NPSPAVQHRGIVIILNM 735 (810)
T ss_dssp HHHSSSSHHHHHHHGGGC--SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT-CSSHHHHHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHhcC--CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC-CCCHHHHHHHHHHHHHH
Confidence 222 2477888888875 478999999999999998544443434431226766665554 78999999999999776
Q ss_pred H
Q 039062 866 N 866 (871)
Q Consensus 866 ~ 866 (871)
-
T Consensus 736 ~ 736 (810)
T 3now_A 736 I 736 (810)
T ss_dssp H
T ss_pred H
Confidence 3
No 27
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.79 E-value=8.5e-15 Score=176.73 Aligned_cols=698 Identities=10% Similarity=0.077 Sum_probs=409.5
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchh
Q 039062 91 TQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQD 170 (871)
Q Consensus 91 ~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~ 170 (871)
+.+.+.+ +.+.+++...|+.|-+.+..+-+. | +.|.-+...|.. +.+..+|..|...|...+... -..++.+
T Consensus 16 ~~l~~~l-~~~~~p~~~~r~~Ae~~L~~~~~~--p-~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~-W~~l~~~ 87 (1049)
T 3m1i_C 16 ALLDQVV-STFYQGSGVQQKQAQEILTKFQDN--P-DAWQKADQILQF---STNPQSKFIALSILDKLITRK-WKLLPND 87 (1049)
T ss_dssp HHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHS--T-TGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHT-GGGSCHH
T ss_pred HHHHHHH-HHHhCCChHHHHHHHHHHHHHHhC--c-hHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhh-CccCCHH
Confidence 3444333 334455666788888888777443 4 578876655533 457889999999999877653 2334344
Q ss_pred hHHHHHHHHHhhhcCC--CC-----CHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 039062 171 HVNKILTAVVQGMNAS--EM-----NNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECL 243 (871)
Q Consensus 171 ~~~~i~~~l~~~l~~~--~~-----~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l 243 (871)
....+-..++..+.+. ++ +..+|.....++..++... +. ..|+.+++.+.+.++ .++..+..++.+|
T Consensus 88 ~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~---~p--~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L 161 (1049)
T 3m1i_C 88 HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE---WP--QNWPEFIPELIGSSS-SSVNVCENNMIVL 161 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHH---TT--TTCTTHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHh---Cc--ccchHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 4555555555555421 11 4688888888888876531 11 235667777777776 4566677778888
Q ss_pred HHHHHHhH----------------HhhHHhHHHHHHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCC
Q 039062 244 VSISSTYY----------------EKLAPYMQDIYSITAKAVRE-DEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNS 306 (871)
Q Consensus 244 ~~l~~~~~----------------~~~~~~~~~l~~~~~~~~~~-~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~ 306 (871)
..+.+... ..+..+++.+++.+...+.+ .+.+++..+++++.....-.
T Consensus 162 ~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi--------------- 226 (1049)
T 3m1i_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWI--------------- 226 (1049)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS---------------
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC---------------
Confidence 77775432 33455666777777777754 34567777777765543310
Q ss_pred CCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHc-CCC---cc-------cchHHHHHh-
Q 039062 307 DIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTV-GDD---IV-------PLVIPFIEE- 374 (871)
Q Consensus 307 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~-~~~---~~-------~~l~~~l~~- 374 (871)
+ ..+. .-+.+++.+++.+.. + -.+|.+|.+|+..+.... ++. +. +.++..+..
T Consensus 227 --~-~~~~--~~~~ll~~l~~~~l~---~-------~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~s 291 (1049)
T 3m1i_C 227 --P-YRYI--YETNILELLSTKFMT---S-------PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATS 291 (1049)
T ss_dssp --C-THHH--HSSSHHHHHHTHHHH---S-------HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --C-HHHH--hhhhHHHHHHHHhCC---C-------HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHh
Confidence 0 0111 113455555532221 1 146777888887777652 221 00 112222211
Q ss_pred h-------------hcCCChhhHHHHHHHHHHhhcCC-----ChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 039062 375 N-------------IAKPDWRQREAATYAFGSILEGP-----SPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGR 436 (871)
Q Consensus 375 ~-------------l~~~~~~~r~~a~~~l~~l~~~~-----~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~ 436 (871)
. ..+.++......+..+..+++.. .+....+++..+++.++... .+++..|+..++..+..
T Consensus 292 i~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~-~~~d~~v~~~~lefw~~ 370 (1049)
T 3m1i_C 292 VMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLS-KIEERELFKTTLDYWHN 370 (1049)
T ss_dssp TCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHH
T ss_pred hCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHH
Confidence 0 11233444444444444443321 01224567788899999888 78888888888777777
Q ss_pred HhhhhccCCCCCCccchhhHHHHHHHHHHhccC----C-------------------hHHHHHHHHHHHHHHhhcccCCC
Q 039062 437 IFEFLHGSTIGTPIITQANCQQIITVLLQSMKD----T-------------------PNVAEKACGALYFLAQGYEDVGP 493 (871)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d----~-------------------~~v~~~a~~~l~~l~~~~~~~~~ 493 (871)
+++..... +........++..+++.++..+.- . +..+..+..+|..++....
T Consensus 371 l~~~l~~~-~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~---- 445 (1049)
T 3m1i_C 371 LVADLFYE-PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV---- 445 (1049)
T ss_dssp HHHHHHHS-TTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH----
T ss_pred HHHHHHhc-hhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCH----
Confidence 77632000 000123356777888888877631 0 1234456677777764321
Q ss_pred CCCCcchHHHHHHHHHHhhcc--CChhhhhHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHhhhccCCChhhH
Q 039062 494 SSPLTPFFQEIVQSLLTVTHR--EDAGESRLRTAAYETLNEVVRSSTDE-TAPMVLQLVPVIMMELHKTLEGQKLSSDER 570 (871)
Q Consensus 494 ~~~l~~~~~~il~~l~~~l~~--~~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ 570 (871)
. +.++.+++.+...+.. .+| +.+++++.+++.++..+... ..++++.+++.+...... ....++
T Consensus 446 -~---~~l~~v~~~l~~~l~~~~~~W---~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~------~~~~~~ 512 (1049)
T 3m1i_C 446 -I---DTEEIMISKLARQIDGSEWSW---HNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVK------KRGKDN 512 (1049)
T ss_dssp -H---HHHHHHHHHHHHHHTSSSCCH---HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTS------SCSHHH
T ss_pred -H---HHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhh------hccccc
Confidence 1 2334444444444432 334 56889999999888766543 234566666666543211 001121
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhh-------
Q 039062 571 EKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFA------- 643 (871)
Q Consensus 571 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~------- 643 (871)
.+.++..++++++.+...+... ..++..+++.++..+.+++..++..|+.++.+++..++..+.
T Consensus 513 --~~~v~~~~~~~lgry~~~~~~~-------~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~ 583 (1049)
T 3m1i_C 513 --KAVVASDIMYVVGQYPRFLKAH-------WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES 583 (1049)
T ss_dssp --HHHHHHHHHHHHHHCHHHHHHC-------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred --hHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 2345556888888887766543 357889999999999888889999999999999999888775
Q ss_pred -hhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh--hcccccHHHHHHHHHHHccC--------CCC--CCc-CC
Q 039062 644 -KYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE--EKILPYCDGIMTQLLKDLSS--------NQL--HRS-VK 709 (871)
Q Consensus 644 -~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~~--------~~~--~~~-v~ 709 (871)
||++.++..+...+...+. +.....+.+++.++...+ +...+|+..+++.+...+.. .+. +.+ ++
T Consensus 584 ~p~~~~il~~l~~~~~~~~~-~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 662 (1049)
T 3m1i_C 584 EPFIQTIIRDIQKTTADLQP-QQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVK 662 (1049)
T ss_dssp SCHHHHHHHTHHHHHTTSCH-HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHH
Confidence 9999999988877765433 445677888888887766 34667777777776544321 100 001 11
Q ss_pred --chHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhccc----------CCCCChhHHHHHHHHHHHHHHHHHHHhhhc
Q 039062 710 --PPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAH----------TANVDDDMTEYTNSLRNGILEAYSGIFQGF 777 (871)
Q Consensus 710 --~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~----------~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~ 777 (871)
...+.+++.++..+|..|.|+++.+++.+.+.+..... ..........+...++..+.+.+.......
T Consensus 663 ~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~ 742 (1049)
T 3m1i_C 663 IIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKA 742 (1049)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 24467888999999999999999888766544432100 000000001122333333334344333332
Q ss_pred cCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHH----Hc--CCC
Q 039062 778 KNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNEC----LS--SKD 851 (871)
Q Consensus 778 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~----~~--~~~ 851 (871)
.. ....+.||++.++..++..+.....+.. -..++.+++.++..+|+.+.||++. ++..++... .+ +.+
T Consensus 743 -~~-l~~~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~l~l~~~ii~~~~~~~~~~l~~--i~~~l~~~~~~~i~~~~~~~ 817 (1049)
T 3m1i_C 743 -RN-LDDVVKVLVEPLLNAVLEDYMNNVPDAR-DAEVLNCMTTVVEKVGHMIPQGVIL--ILQSVFECTLDMINKDFTEY 817 (1049)
T ss_dssp -SC-HHHHHHHTHHHHHHHHHHHHHHSCGGGC-CTHHHHHHHHHHHHHGGGCHHHHHH--HHHHHHHHHHHHHSSCSSSS
T ss_pred -CC-HHHHHHHHHHHHHHHHHHHHHhCCcccc-cHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHhcchhhC
Confidence 11 2233567788888777776542110000 1458999999999999999999987 244444332 12 246
Q ss_pred hhhHHHHHHHHHHHH
Q 039062 852 HMIKESAEWARLAIN 866 (871)
Q Consensus 852 ~~~~~~~~~~~~~~~ 866 (871)
+++|+..-.-++++.
T Consensus 818 pd~~~~~f~ll~~i~ 832 (1049)
T 3m1i_C 818 PEHRVEFYKLLKVIN 832 (1049)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 788877655444443
No 28
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.78 E-value=1.7e-15 Score=170.23 Aligned_cols=442 Identities=15% Similarity=0.127 Sum_probs=311.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhC--CCCChhHHHHHHHHHHcccccchhhhHHHHhhh
Q 039062 4 EVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELAN--DDKPVDSRKLAGLILKNALDAKEQHRKFELVQR 81 (871)
Q Consensus 4 ~l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~--~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~ 81 (871)
-+.++++.+.++|.+.|+.+.-.+..+.+.+ ++....+.+.+.. .+.++.+|.+|...+.+..
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-------------- 114 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-------------- 114 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--------------
Confidence 3567778888999999999999999877654 4444433443322 1457899999987775542
Q ss_pred ccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCch--HHHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 039062 82 WLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWP--ELIVSLLSNVHQLPAHVKQATLETLGYLC 159 (871)
Q Consensus 82 ~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~--~ll~~L~~~l~~~~~~~r~~al~~l~~l~ 159 (871)
+++..+.+.+.+.+++.++++.||+.|+.++..+++.. | +.++ ++++.+.+.+.++++.++.+|+.+|..++
T Consensus 115 ----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p-~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~ 188 (591)
T 2vgl_B 115 ----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-A-QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEIS 188 (591)
T ss_dssp ----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-C-CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHT
T ss_pred ----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-h-hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 45556778888999999999999999999999999864 6 4666 58999999999999999999999999998
Q ss_pred hccCCCc-cchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHH
Q 039062 160 EEVSPDV-VEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQA 238 (871)
Q Consensus 160 ~~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~ 238 (871)
... ++. . .......+..++..+. +.++-.+...++++..+.. . .......+++.+...+++.++.++..
T Consensus 189 ~~~-~~~~~-~~l~~~~~~~Ll~~l~--~~~~~~q~~il~~l~~l~~---~---~~~~~~~~l~~l~~~l~~~~~~V~~e 258 (591)
T 2vgl_B 189 ESH-PNSNL-LDLNPQNINKLLTALN--ECTEWGQIFILDCLSNYNP---K---DDREAQSICERVTPRLSHANSAVVLS 258 (591)
T ss_dssp TSC-CSCCS-CCCHHHHHHHHHHHHH--HCCHHHHHHHHHHHHTSCC---C---SHHHHHHHHHHHTTCSCSSTTHHHHH
T ss_pred hhC-CCccc-hhccHHHHHHHHHcCC--CCCchHHHHHHHHHHHhCC---C---ChHHHHHHHHHHHHHHcCCChHHHHH
Confidence 876 433 1 1233445556666666 6777788888888766432 1 12233668888888899999999999
Q ss_pred HHHHHHHHHHH---hHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHH
Q 039062 239 AFECLVSISST---YYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIK 315 (871)
Q Consensus 239 a~~~l~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (871)
|+.++..+... .++.+......+...+... .+.+.+++..|+..+..++.... ..+.
T Consensus 259 a~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L-~~~d~~vr~~aL~~l~~i~~~~p-------------------~~~~ 318 (591)
T 2vgl_B 259 AVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTL-LSGEPEVQYVALRNINLIVQKRP-------------------EILK 318 (591)
T ss_dssp HHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHH-TTSCHHHHHHHHHHHHHHHHHCC-------------------STTT
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHhCh-------------------HHHH
Confidence 99999887632 2333333344444444433 35788999999999888866421 1111
Q ss_pred hhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhh
Q 039062 316 QALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSIL 395 (871)
Q Consensus 316 ~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~ 395 (871)
+.+..+ +. ..+| .+.+|..|.+.+..++ .+.-+..+++.+.+++.+.++..|..++.+++.++
T Consensus 319 ~~~~~~-------~~-~~~d------~~~Ir~~al~~L~~l~---~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la 381 (591)
T 2vgl_B 319 QEIKVF-------FV-KYND------PIYVKLEKLDIMIRLA---SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCA 381 (591)
T ss_dssp TCTTTT-------SC-CTTS------CHHHHHHHHHHHHHTC---CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhh-------ee-ccCC------hHHHHHHHHHHHHHHC---ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 111111 01 1111 1578876666555443 44445677777888888899999999999999999
Q ss_pred cCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC--ChHH
Q 039062 396 EGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD--TPNV 473 (871)
Q Consensus 396 ~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v 473 (871)
... + +....+++.++..+ .+....|+..+..+++.+....+. .. ..+++.|.+.+.+ .+.+
T Consensus 382 ~~~-~----~~~~~~v~~Ll~ll-~~~~~~v~~e~i~~l~~ii~~~p~-------~~----~~~v~~L~~~l~~~~~~~~ 444 (591)
T 2vgl_B 382 IKV-E----QSAERCVSTLLDLI-QTKVNYVVQEAIVVIRDIFRKYPN-------KY----ESIIATLCENLDSLDEPDA 444 (591)
T ss_dssp TTC-H----HHHHHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHHHSCS-------SC----CTTHHHHHHTTTTCCSHHH
T ss_pred HhC-h----hHHHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHCcc-------hH----HHHHHHHHHHHHhccCHHH
Confidence 875 2 23456778888889 899999998888888888876642 12 3456667777764 6889
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHH
Q 039062 474 AEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAP 543 (871)
Q Consensus 474 ~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 543 (871)
+..++|+++.+++.. +..+.++..+++.+... +..+|.+++.++..+....+....+
T Consensus 445 ~~~~~wilGey~~~~----------~~~~~~l~~l~~~~~~~---~~~vr~~~l~a~~Kl~~~~p~~~~~ 501 (591)
T 2vgl_B 445 RAAMIWIVGEYAERI----------DNADELLESFLEGFHDE---STQVQLTLLTAIVKLFLKKPSETQE 501 (591)
T ss_dssp HHHHHHHHHTTCTTC----------TTHHHHHHHHSTTCSSS---CHHHHHHHHHHHHHHHTTCCSTTHH
T ss_pred HHHHHHHHHcccccc----------cCHHHHHHHHHHhhccC---CHHHHHHHHHHHHHHHhcCchHHHH
Confidence 999999998774432 12456666666665543 4589999999999999988764433
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.75 E-value=2.7e-16 Score=172.48 Aligned_cols=366 Identities=14% Similarity=0.133 Sum_probs=250.2
Q ss_pred CCchHH---HHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHH--HHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 039062 127 KQWPEL---IVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVN--KILTAVVQGMNASEMNNDVRLAATRALY 201 (871)
Q Consensus 127 ~~~~~l---l~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~vr~~al~~l~ 201 (871)
..|++. ++.|++.+.++++.+|..|+..|..++........ ..... .+++.++..+.+ +.++.+|..|+.++.
T Consensus 13 ~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~-~~~~~v~~~a~~~L~ 90 (450)
T 2jdq_A 13 MEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKR-KENCTLQFESAWVLT 90 (450)
T ss_dssp ---------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTC-TTCHHHHHHHHHHHH
T ss_pred HhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCC-CCCHHHHHHHHHHHH
Confidence 589887 89999999999999999999999998653212222 22222 688888888883 238999999999999
Q ss_pred HhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhC-CChhHHHH
Q 039062 202 NALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQ-DIYSITAKAVRE-DEEPVALQ 279 (871)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~-~~~~~~~~ 279 (871)
++....+.... .......++.+.+.+.++++++|..++.+|..++...+..-...+. .+++.+...+.+ .+.+++..
T Consensus 91 ~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~ 169 (450)
T 2jdq_A 91 NIASGNSLQTR-IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRN 169 (450)
T ss_dssp HHHSSCHHHHH-HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHH
T ss_pred HHhcCCHHHHH-HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHH
Confidence 98753221110 0011347888899999999999999999999998764432222222 456667777775 67899999
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHH
Q 039062 280 AIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVART 359 (871)
Q Consensus 280 a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~ 359 (871)
|+.++..++... ++. .....+..++|.++..+.. +| ..++..+..+|..++..
T Consensus 170 a~~~L~~l~~~~-------------~~~-----~~~~~~~~~l~~L~~~l~~--~~-------~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 170 AVWALSNLCRGK-------------SPP-----PEFAKVSPCLNVLSWLLFV--SD-------TDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHHHHHHCCS-------------SSC-----CCGGGTGGGHHHHHHHTTC--CC-------HHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhCCC-------------CCC-----CCHHHHHHHHHHHHHHHcc--CC-------HHHHHHHHHHHHHHHCC
Confidence 999998887531 000 0011224566777766642 11 25777788888888653
Q ss_pred cCC---C-cccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHH
Q 039062 360 VGD---D-IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTL 434 (871)
Q Consensus 360 ~~~---~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l 434 (871)
.++ . .-..+++.+...+.+++|.+|..++.+++.++.+. .......+ ..+++.+...+ .++++.+|..++++|
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll-~~~~~~vr~~a~~~L 300 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD-DIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTI 300 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHTTTHHHHHHHHT-TCSSHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCC-hHHHHHHHHCccHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 211 0 11245666777778899999999999999999875 23322223 25889999999 999999999999999
Q ss_pred HHHhhhhccCCCCCCccchhhH-HHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchH-HHHHHHHHHh
Q 039062 435 GRIFEFLHGSTIGTPIITQANC-QQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFF-QEIVQSLLTV 511 (871)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~-~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~-~~il~~l~~~ 511 (871)
++++.... ......+ ..++|.+++.+.+ ++.|+..++++|.+++.... ++.....+ ..+++.++..
T Consensus 301 ~~l~~~~~-------~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~l~~~~~i~~L~~l 369 (450)
T 2jdq_A 301 SNITAGNR-------AQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGS----AEQIKYLVELGCIKPLCDL 369 (450)
T ss_dssp HHHTTSCH-------HHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHTCHHHHHHG
T ss_pred HHHHcCCH-------HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC----HHHHHHHHHCCCHHHHHHH
Confidence 99986432 1111122 3678888888876 78999999999999986421 11111222 2467788888
Q ss_pred hccCChhhhhHHHHHHHHHHHHHHhcC
Q 039062 512 THREDAGESRLRTAAYETLNEVVRSST 538 (871)
Q Consensus 512 l~~~~~~~~~vr~~a~~~l~~l~~~~~ 538 (871)
+... +..+|..++.+|..++...+
T Consensus 370 l~~~---~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 370 LTVM---DSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp GGSS---CHHHHHHHHHHHHHHHHHHH
T ss_pred hcCC---CHHHHHHHHHHHHHHHHhch
Confidence 8766 45899999999999998654
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.74 E-value=2.2e-15 Score=174.36 Aligned_cols=524 Identities=10% Similarity=0.045 Sum_probs=326.6
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHH
Q 039062 94 KTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVN 173 (871)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 173 (871)
...+++.|.+++..+|..+++.+....+.... ...++.|...+.++++.+|+.|+.+|..++... .........+
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~----~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-~~~~~i~~~~ 191 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELA----TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSP 191 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-HHHHHHTTCH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHH----hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-hhHHHHHhcc
Confidence 35677888888889999999988876544332 456777777777888999999999999998753 1110011134
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHh
Q 039062 174 KILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEK 253 (871)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 253 (871)
.+++.++..+.+ +.++.+|..|+.+|.++... ... .........++.+.+++.++++.++..|+.+|..++...+..
T Consensus 192 ~~i~~Lv~~L~~-~~d~~vr~~Aa~aL~~Ls~~-~~~-~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQN-TNDVETARCTSGTLHNLSHH-REG-LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTS-HHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCC-chh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 677788888874 45899999999999996543 111 101111346888899999999999999999999999875443
Q ss_pred hHHhH-HHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcc
Q 039062 254 LAPYM-QDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQ 332 (871)
Q Consensus 254 ~~~~~-~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 332 (871)
..... ...++.++..+.+.+..++..++.++..++....+. ...+.. ...++.++..+...
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~---------------~~~i~~---~~~i~~Lv~lL~~~ 330 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES---------------KLIILA---SGGPQALVNIMRTY 330 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH---------------HHHHHT---TTHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHH---------------HHHHHH---cCCHHHHHHHHhcC
Confidence 33332 256777777888888787777766665554210000 001111 13356666665432
Q ss_pred cCCcccccccccHhHHHHHHHHHHHHHcC--CCc-ccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHH
Q 039062 333 EEDQDQEEGAWNIAMAGGTCLGLVARTVG--DDI-VPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNV 409 (871)
Q Consensus 333 ~~d~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~ 409 (871)
++ ...+..+..+|..++.... ..+ -...++.+...+.+.+...+..++.++..++.... ... ....
T Consensus 331 --~~------~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~--~~~~ 399 (780)
T 2z6g_A 331 --TY------EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT-KQE--GMEG 399 (780)
T ss_dssp --CC------HHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCT-TCS--CCHH
T ss_pred --CH------HHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccch-hhh--hhhh
Confidence 11 1344456677777764211 111 12346777777888888899999999999987653 211 1356
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC--C-hHHHHHHHHHHHHHHh
Q 039062 410 ALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD--T-PNVAEKACGALYFLAQ 486 (871)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~-~~v~~~a~~~l~~l~~ 486 (871)
+++.++..+ .++++.+|..++++|+.++..... ......-...++.|++.+.+ + ..|+..|+++|.+++.
T Consensus 400 ~i~~Lv~lL-~~~d~~vr~~A~~aL~~L~~~~~~------~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 400 LLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYK------NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp HHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHH------HHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHH------HHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 889999999 999999999999999999764320 00001112467777777764 2 4899999999999864
Q ss_pred hcccCCCCCCCcch--HHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHhhh--
Q 039062 487 GYEDVGPSSPLTPF--FQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMV-LQLVPVIMMELHKTLE-- 561 (871)
Q Consensus 487 ~~~~~~~~~~l~~~--~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~~~~~-- 561 (871)
...+ ....... -...++.|+..+...+ +..+|..++.+|+.+....... ..+. ..+++.+++.+.....
T Consensus 473 ~~~~---~~~~~~~v~~~~~l~~L~~lL~~~~--~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~ 546 (780)
T 2z6g_A 473 RHQD---AEMAQNAVRLHYGLPVVVKLLHPPS--HWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDT 546 (780)
T ss_dssp SSTT---HHHHHHHHHHTTCHHHHHHTTSTTC--CHHHHHHHHHHHHHHHSSHHHH-HHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cCch---HHHHHHHHHHcCCHHHHHHHhcCCC--hHHHHHHHHHHHHHHhcCHHHH-HHHHHCCCHHHHHHHHHhcchhH
Confidence 2110 0000000 0133666777777654 3478999999999998633221 1222 2567777777765310
Q ss_pred -cc---------CCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhh--HHHHHHHHHHHHcccCcchhhhHHH
Q 039062 562 -GQ---------KLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQY--ADQIMGLFLRVFACRSATVHEEAML 629 (871)
Q Consensus 562 -~~---------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~i~~~l~~~l~~~~~~~~~~a~~ 629 (871)
.. ...... ..+++..++.+|..++.. .. .... -...++.++.++.+.+..++..+..
T Consensus 547 ~~~aa~al~nq~~~~~~~---~~~v~~~a~~aL~~La~~--~~------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~ 615 (780)
T 2z6g_A 547 QRRTSMGGTQQQFVEGVR---MEEIVEACTGALHILARD--IH------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 615 (780)
T ss_dssp HHTTC------CCSTTCC---HHHHHHHHHHHHHHHTTS--HH------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHHhhccccchhhcccC---hHHHHHHHHHHHHHHhcC--hh------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHH
Confidence 00 000000 123555677777776521 00 1111 1245788899999988899999999
Q ss_pred HHHHHHHHhhhhhhhhhHh--HHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh
Q 039062 630 AIGALAYAAGLDFAKYMPD--FYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE 681 (871)
Q Consensus 630 ~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 681 (871)
+|+.++.. +.....+.. .++.|...+.+. +.++|..|.++|..++...+
T Consensus 616 aL~~L~~~--~~~~~~i~~~g~i~~L~~Ll~~~-~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 616 VLCELAQD--KEAAEAIEAEGATAPLTELLHSR-NEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHTS--HHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhcC--HHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCh
Confidence 99998632 233333433 678888877655 55899999999999876544
No 31
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.74 E-value=2.4e-16 Score=172.84 Aligned_cols=398 Identities=11% Similarity=0.097 Sum_probs=273.9
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCc------hHHHHHHHHhhcCC-ChHHHHHHHHHHHHHhhccCCCc
Q 039062 94 KTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQW------PELIVSLLSNVHQL-PAHVKQATLETLGYLCEEVSPDV 166 (871)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~------~~ll~~L~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~ 166 (871)
.+.+++.+.++++.+|..++.++..++..... ..+ +.+++.|.+.+.++ ++.+|..|..++..++... ++.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~-~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~ 99 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPN-PPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQ 99 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSS-CCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC-CcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHH
Confidence 45677788888999999999999998763322 111 26889999999888 7899999999999998743 221
Q ss_pred cchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhcc-CcHHHHHHHHHHHHH
Q 039062 167 VEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQS-AELKIRQAAFECLVS 245 (871)
Q Consensus 167 ~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~a~~~l~~ 245 (871)
...-.....++.++..+. ++++.+|..|+.+|.++....+... .......+++.+...+.+ +++++|..++.++..
T Consensus 100 ~~~~~~~~~i~~L~~lL~--~~~~~vr~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLS--SEFEDVQEQAVWALGNIAGDSTMCR-DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHH-HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHccCCHHHH-HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 100112467888999998 6899999999999999875322110 000112356777888874 689999999999999
Q ss_pred HHHHh-HHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhh-hhhhHH
Q 039062 246 ISSTY-YEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQA-LPALVP 323 (871)
Q Consensus 246 l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 323 (871)
++... +..-...+..+++.+...+.+.+++++..++..+..++....+ ..... -..++|
T Consensus 177 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~-------------------~~~~~~~~~~i~ 237 (450)
T 2jdq_A 177 LCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPND-------------------KIQAVIDAGVCR 237 (450)
T ss_dssp HHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHH-------------------HHHHHHHTTTHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcH-------------------HHHHHHHcCcHH
Confidence 98643 2211222345566666678888899999999988888753111 11111 124567
Q ss_pred HHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCC---Ccc-cchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCC
Q 039062 324 LLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGD---DIV-PLVIPFIEENIAKPDWRQREAATYAFGSILEGPS 399 (871)
Q Consensus 324 ~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~ 399 (871)
.++..+.. .+ +.++..|..+|..++...+. .++ ..+++.+...+.+++|.+|..++.+++.++.+.
T Consensus 238 ~L~~ll~~--~~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~- 307 (450)
T 2jdq_A 238 RLVELLMH--ND-------YKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN- 307 (450)
T ss_dssp HHHHHTTC--SC-------HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-
T ss_pred HHHHHHCC--Cc-------hhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-
Confidence 77766642 11 57888888998888754321 111 246777788888899999999999999999865
Q ss_pred hhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhh-HHHHHHHHHHhccC-ChHHHHH
Q 039062 400 PDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQAN-CQQIITVLLQSMKD-TPNVAEK 476 (871)
Q Consensus 400 ~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~~il~~l~~~l~d-~~~v~~~ 476 (871)
.+.....+ ..++|.++..+ .++++.||..++|+|++++..... ...... -..++|.|++.+.+ +++++..
T Consensus 308 ~~~~~~~~~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~------~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 380 (450)
T 2jdq_A 308 RAQIQTVIDANIFPALISIL-QTAEFRTRKEAAWAITNATSGGSA------EQIKYLVELGCIKPLCDLLTVMDSKIVQV 380 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHTCHHHHHHGGGSSCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCCCH------HHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 34444444 37889999999 999999999999999999875310 111111 23588999999986 7899999
Q ss_pred HHHHHHHHHhhcccCC--CCCCCcchHHHH-----HHHHHHhhccCChhhhhHHHHHHHHHHHHHH
Q 039062 477 ACGALYFLAQGYEDVG--PSSPLTPFFQEI-----VQSLLTVTHREDAGESRLRTAAYETLNEVVR 535 (871)
Q Consensus 477 a~~~l~~l~~~~~~~~--~~~~l~~~~~~i-----l~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~ 535 (871)
++++|.+++....... ....+.+|...+ ++.+.....++ +..++..++.++..+..
T Consensus 381 a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~---~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 381 ALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHE---NQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHH---HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHCC
Confidence 9999999987543210 012345666666 45555554433 45778888887776653
No 32
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.72 E-value=1.6e-16 Score=177.66 Aligned_cols=414 Identities=13% Similarity=0.113 Sum_probs=277.1
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH-HHHHHHHHHHccCCCc-HHHHHHHHHHHHHHhhhhccCCC
Q 039062 369 IPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV-NVALSFMLSALTKDPN-NHVKDTTAWTLGRIFEFLHGSTI 446 (871)
Q Consensus 369 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l-~~i~~~l~~~l~~d~~-~~vr~~a~~~l~~~~~~~~~~~~ 446 (871)
++.+.+.+.++++..|..|+..+..++...........+ ..++|.++..+ .+++ +.+|..|+|+|++++....
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~~v~~~A~~~L~~l~~~~~---- 150 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFL-TREDFPQLQFEAAWALTNIASGTS---- 150 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHH-TCTTCHHHHHHHHHHHHHHHTSCH----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHhCCCH----
Confidence 455556677889999999999999997754212222222 46789999999 8876 9999999999999997532
Q ss_pred CCCccchhhH-HHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHH--HHHHHHHHhhccCChhhhhH
Q 039062 447 GTPIITQANC-QQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQ--EIVQSLLTVTHREDAGESRL 522 (871)
Q Consensus 447 ~~~~~~~~~~-~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~--~il~~l~~~l~~~~~~~~~v 522 (871)
....... ...+|.|+..+.+ ++.++..|+++|.+++.... .....+- ..++.++..+.+.. +..+
T Consensus 151 ---~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~------~~~~~i~~~g~l~~Ll~lL~~~~--~~~v 219 (528)
T 4b8j_A 151 ---ENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP------KCRDLVLANGALLPLLAQLNEHT--KLSM 219 (528)
T ss_dssp ---HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH------HHHHHHHHTTCHHHHHHTCCTTC--CHHH
T ss_pred ---HHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh------hhHHHHHHCCcHHHHHHHHhcCC--CHHH
Confidence 1111111 2588999999986 78999999999999975311 1111111 25667777774333 5688
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhh
Q 039062 523 RTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFM 602 (871)
Q Consensus 523 r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 602 (871)
+..+..+|+.++...+.........++|.++..+... +. .++..+++++..++..-. +...
T Consensus 220 ~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~---------~~----~v~~~a~~aL~~l~~~~~------~~~~ 280 (528)
T 4b8j_A 220 LRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN---------DE----EVLTDACWALSYLSDGTN------DKIQ 280 (528)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC---------CH----HHHHHHHHHHHHHTSSCH------HHHH
T ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC---------CH----HHHHHHHHHHHHHHcCCH------HHHH
Confidence 9999999999998876555666788888888877432 21 466678888888763211 1111
Q ss_pred hhH-HHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh-HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHh
Q 039062 603 QYA-DQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM-PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRAL 680 (871)
Q Consensus 603 ~~~-~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~ 680 (871)
... ..+++.++.++.+++..++..++.+|+.++..........+ ..++|.+...+.+..+..++..|+++|++++...
T Consensus 281 ~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~ 360 (528)
T 4b8j_A 281 AVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN 360 (528)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCC
Confidence 122 25688999999998889999999999999865443333333 4578888888886636689999999999998643
Q ss_pred hhcccccH-HHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhH--HHHHHHHHHHHhhcccCCCCChhHHH
Q 039062 681 EEKILPYC-DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYL--MYAMPMLQSAADLSAHTANVDDDMTE 757 (871)
Q Consensus 681 ~~~~~~~~-~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~d~~~~~ 757 (871)
.+.....+ ..+++.|+..+.+. +..++..++++++.++.........++ ..+++.+...+... |
T Consensus 361 ~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~------d----- 427 (528)
T 4b8j_A 361 KDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP------D----- 427 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS------C-----
T ss_pred HHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCC------C-----
Confidence 32222211 36678888888776 678999999999999987544455554 35678888877653 3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCcc--ccccccchHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHh-cccc
Q 039062 758 YTNSLRNGILEAYSGIFQGFKNSPK--TQLLIPYAPHI-----LQFLDSMYMEKDMDELVMKTAIGLLGDLADTL-GSNA 829 (871)
Q Consensus 758 ~~~~~r~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~i-----~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~-~~~~ 829 (871)
..++..++.++..++........ .....+|...+ +..+..+.++ .+.+++..|..++..+...- +.++
T Consensus 428 --~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~--~~~~v~~~a~~il~~~~~~e~~~~~ 503 (528)
T 4b8j_A 428 --IRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSH--DNNEIYEKAVKILEAYWMDEEDDTM 503 (528)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGC--SSHHHHHHHHHHHHHHCC-------
T ss_pred --HHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcC--CCHHHHHHHHHHHHHHCCCcccccc
Confidence 45777888888888875321000 00122233222 4556665554 57889999999998877652 3334
Q ss_pred ccccc
Q 039062 830 GSLIQ 834 (871)
Q Consensus 830 ~~~l~ 834 (871)
.++++
T Consensus 504 ~~~~~ 508 (528)
T 4b8j_A 504 GATTV 508 (528)
T ss_dssp -----
T ss_pred cccCC
Confidence 44443
No 33
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.70 E-value=3.8e-12 Score=149.52 Aligned_cols=680 Identities=11% Similarity=0.080 Sum_probs=389.6
Q ss_pred HHHHHHHHHHHHHHHh----hChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhh-hccCCCHHHHH
Q 039062 17 GTVRKHAEESLKQFQE----QNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQ-RWLSLDANVKT 91 (871)
Q Consensus 17 ~~~r~~A~~~L~~~~~----~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~-~~~~~~~~~~~ 91 (871)
+-+|++.-+.+..+.. +++|+++..+.+.+.+ ++..+..+..+|+..-.. ... .-..++..-+.
T Consensus 114 ~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~---~~~~~~~~L~iL~~L~EE--------V~~~~~~~l~~~r~~ 182 (1023)
T 4hat_C 114 KNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLKLLSEE--------VFDFSAEQMTQAKAL 182 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT---CHHHHHHHHHHHHHHHHH--------HHTSCTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHH--------HHHhhhccchHHHHH
Confidence 3445555555544333 3577888888887754 245566666666554321 000 00123333222
Q ss_pred HH-----------HHHHHHhhcCC-chHHHHHHHHHHHHHHhhhcCCC--CchHHHHHHH-HhhcCCChHHHHHHHHHHH
Q 039062 92 QI-----------KTCLLNTLTST-VADARSTSSQVIAKVAGIELPQK--QWPELIVSLL-SNVHQLPAHVKQATLETLG 156 (871)
Q Consensus 92 ~i-----------~~~ll~~l~~~-~~~vr~~~a~~l~~i~~~~~~~~--~~~~ll~~L~-~~l~~~~~~~r~~al~~l~ 156 (871)
.+ .+.+...|.+. ++.+...+-+++...... .|-+ .-+.+++.++ ..+. ++..|..|+.||.
T Consensus 183 ~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W-I~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~ 259 (1023)
T 4hat_C 183 HLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHW-IPYRYIYETNILELLSTKFMT--SPDTRAITLKCLT 259 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT-SCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh-CCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 33 22333344333 356666666666665542 1210 0145788888 6664 5678999999999
Q ss_pred HHhhccC-CC--ccchhhHHHHHHHHHhhh---------------c-CCCCCHHHHHHHHHHHHHhhhcchhcccC-hhh
Q 039062 157 YLCEEVS-PD--VVEQDHVNKILTAVVQGM---------------N-ASEMNNDVRLAATRALYNALSFAQANFSN-DME 216 (871)
Q Consensus 157 ~l~~~~~-~~--~~~~~~~~~i~~~l~~~l---------------~-~~~~~~~vr~~al~~l~~~~~~~~~~~~~-~~~ 216 (871)
.++..-. ++ .+ ...+..+++.++..+ . .++.+.+....-.+.+..+.+........ ...
T Consensus 260 eIv~~~~~~~~~~~-~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~ 338 (1023)
T 4hat_C 260 EVSNLKIPQDNDLI-KRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESL 338 (1023)
T ss_dssp HHHTSCCCSSCHHH-HHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGG
T ss_pred HHHccccCCchHHH-HHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcch
Confidence 9987321 12 12 223333333322211 1 11234455445555555444322222211 111
Q ss_pred HH---HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhH------HhhHHhHHHHHHHHHHHhhCCCh---------hH-H
Q 039062 217 RD---YIMRVVCEATQSAELKIRQAAFECLVSISSTYY------EKLAPYMQDIYSITAKAVREDEE---------PV-A 277 (871)
Q Consensus 217 ~~---~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~------~~~~~~~~~l~~~~~~~~~~~~~---------~~-~ 277 (871)
.+ ..+..++.+...+|.++...+++.|..+.+..+ ..+.+++..++..++..+.-+.+ +. +
T Consensus 339 ~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~ 418 (1023)
T 4hat_C 339 RELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVR 418 (1023)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEE
T ss_pred hHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHH
Confidence 22 234466666677899999999999999987543 34667777888888877754321 00 0
Q ss_pred -----HHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHH
Q 039062 278 -----LQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTC 352 (871)
Q Consensus 278 -----~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~ 352 (871)
....+.+..+-+ ...-. +.-.....++.+++.+.+.+... +.+|..+.++.-+
T Consensus 419 e~~~d~d~~~~f~~~Rd----~L~~l-----------~~l~~~~~~~~~~~~l~~~l~~~-------~~~W~~~EA~~~a 476 (1023)
T 4hat_C 419 EFVKESDTIQLYKSERE----VLVYL-----------THLNVIDTEEIMISKLARQIDGS-------EWSWHNINTLSWA 476 (1023)
T ss_dssp CSSCCGGGHHHHHHHHH----HHHHH-----------HHHCHHHHHHHHHHHHHHHHSST-------TCCHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHH----HHHHH-----------hccCHHHHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHH
Confidence 000111111000 00000 00001122222333333333211 1239999999999
Q ss_pred HHHHHHHcCC----CcccchHHHHHhhhcC-----CChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCc
Q 039062 353 LGLVARTVGD----DIVPLVIPFIEENIAK-----PDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423 (871)
Q Consensus 353 l~~l~~~~~~----~~~~~l~~~l~~~l~~-----~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~ 423 (871)
++.++....+ .++|.+++.+.....+ +...+|..+++++|...+-. ..-..+++.+++.++..+ .+++
T Consensus 477 ~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl--~~~~~~L~~vl~~L~~~l-~~~~ 553 (1023)
T 4hat_C 477 IGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFL--KAHWNFLRTVILKLFEFM-HETH 553 (1023)
T ss_dssp HHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHH--HHCHHHHHHHHHHHHHHT-TCSC
T ss_pred HHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHh-hcCC
Confidence 9999886642 3567777777665542 33456777889998877743 223457899999999999 9999
Q ss_pred HHHHHHHHHHHHHHhhhhccCC-CCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchH
Q 039062 424 NHVKDTTAWTLGRIFEFLHGST-IGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFF 501 (871)
Q Consensus 424 ~~vr~~a~~~l~~~~~~~~~~~-~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~ 501 (871)
|+|+.+|++++.++++.+.... ...+.....|++.++..+.+...+ .+.-+..+..++..+++.... ......++
T Consensus 554 ~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~---~~~~~~~l 630 (1023)
T 4hat_C 554 EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS---VAERNRLL 630 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC---HhhHHHHH
Confidence 9999999999999999875211 000111245888888888887765 566677888889988876532 11123344
Q ss_pred HHHHHHHHHhhcc--------CC-hh---hhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhcc-----C
Q 039062 502 QEIVQSLLTVTHR--------ED-AG---ESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQ-----K 564 (871)
Q Consensus 502 ~~il~~l~~~l~~--------~~-~~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~-----~ 564 (871)
+.+++.+...++. ++ +. ..+.-...+++++.++...+..+.+++..+++.+++.++...+.. .
T Consensus 631 ~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~ 710 (1023)
T 4hat_C 631 SDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAA 710 (1023)
T ss_dssp HHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444433332211 11 00 112224578888889999999999999999999998877653210 0
Q ss_pred CCh---hhHH--HHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhh-HHHHHHHHHHHh
Q 039062 565 LSS---DERE--KQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEE-AMLAIGALAYAA 638 (871)
Q Consensus 565 ~~~---~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~-a~~~l~~l~~~~ 638 (871)
.+. ..+. ....++..++..+...+..... .......++++++..++.-...+.+..|+. ++.+.+.++..+
T Consensus 711 ~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~---~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~ 787 (1023)
T 4hat_C 711 EGLIATKTPKVRGLRTIKKEILKLVETYISKARN---LDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKV 787 (1023)
T ss_dssp HCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSC---HHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHH
T ss_pred CCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHH
Confidence 000 0000 0111222233333333333221 122234567888888887777766667764 577888899999
Q ss_pred hhhhhhhhHhHHHHHHh----hhcC--CcchhHHHHHHHHHHHHHHHhhhcccc----cHHHHHHHHHHHccCCCCCCcC
Q 039062 639 GLDFAKYMPDFYKYLEM----GLQN--FEEYQVCAVTVGVVGDICRALEEKILP----YCDGIMTQLLKDLSSNQLHRSV 708 (871)
Q Consensus 639 ~~~~~~~l~~i~~~l~~----~l~~--~~~~~v~~~a~~~l~~l~~~~~~~~~~----~~~~i~~~l~~~l~~~~~~~~v 708 (871)
|..+.+.++.++..+.. .+++ .+.++.|..-+.++..+.+.+...+.. .+..++..++-.++++ +.++
T Consensus 788 ~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~--~r~~ 865 (1023)
T 4hat_C 788 GHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHN--NRDV 865 (1023)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCC--CHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCC--chHH
Confidence 98888888877776543 2332 356789999999999998887644322 4567778788788887 7778
Q ss_pred CchHHHHHHHHHHhhcc----ChH-----HhHHHHHHHHHHHHhh
Q 039062 709 KPPIFSCFGDIALAIGE----NFE-----KYLMYAMPMLQSAADL 744 (871)
Q Consensus 709 ~~~~~~~l~~i~~~~~~----~~~-----~~~~~i~~~l~~~l~~ 744 (871)
-..++..+.++..+... .+. .|.-.++.-+...+.+
T Consensus 866 ~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td 910 (1023)
T 4hat_C 866 EVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTD 910 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888887765542 122 4445555555555544
No 34
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.70 E-value=9.9e-16 Score=171.04 Aligned_cols=400 Identities=12% Similarity=0.071 Sum_probs=273.6
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCc-----hHHHHHHHHhhcCC-ChHHHHHHHHHHHHHhhccCCCcc
Q 039062 94 KTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQW-----PELIVSLLSNVHQL-PAHVKQATLETLGYLCEEVSPDVV 167 (871)
Q Consensus 94 ~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~-----~~ll~~L~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~ 167 (871)
...+++.|.++++.+|..++.++..++...-. ..+ .++++.|++.+.++ ++.+|..|+.+|..++... ++..
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~-~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHR-PPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQT 166 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSS-CSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHH
Confidence 45677888888999999999999998765311 122 35788999999987 7899999999999998753 2111
Q ss_pred chhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Q 039062 168 EQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSIS 247 (871)
Q Consensus 168 ~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~ 247 (871)
..-.....++.++..+. ++++.+|..|+.+|.++....+.... ......+++.+..++.+++++++..++.+|..++
T Consensus 167 ~~~~~~g~i~~Lv~lL~--~~~~~vr~~A~~aL~~l~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLY--TGSVEVKEQAIWALGNVAGDSTDYRD-YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHTTCHHHHHHHHH--HCCHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCCccchH-HHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 00011355778888888 68999999999999998753221100 0011235777888888889999999999999998
Q ss_pred HHh-HHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhh-hhhHHHH
Q 039062 248 STY-YEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQAL-PALVPLL 325 (871)
Q Consensus 248 ~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l 325 (871)
... +..-......+++.+...+.+.++.++..|+.++..++.... ......+ ..++|.+
T Consensus 244 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-------------------~~~~~~~~~~~v~~L 304 (530)
T 1wa5_B 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ-------------------EAIQAVIDVRIPKRL 304 (530)
T ss_dssp CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH-------------------HHHHHHHHTTCHHHH
T ss_pred CCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH-------------------HHHHHHHhcCcHHHH
Confidence 653 222223334567777778888889999999999888875311 1112222 2456777
Q ss_pred HHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCC---Ccc-cchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChh
Q 039062 326 LEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGD---DIV-PLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPD 401 (871)
Q Consensus 326 ~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~ 401 (871)
+..+.. . +|.++..|..+|..++...+. .++ ..+++.+...+.+++|.+|..|+.+++.++.+. ++
T Consensus 305 v~lL~~--~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~-~~ 374 (530)
T 1wa5_B 305 VELLSH--E-------STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN-TE 374 (530)
T ss_dssp HHGGGC--S-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred HHHHCC--C-------ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HH
Confidence 776642 1 157888888888888643211 111 356777778888889999999999999999865 34
Q ss_pred hhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhH--HHHHHHHHHhccC-ChHHHHHH
Q 039062 402 KLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANC--QQIITVLLQSMKD-TPNVAEKA 477 (871)
Q Consensus 402 ~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d-~~~v~~~a 477 (871)
.....+ ..++|.++..+ .++++.+|..++|+|++++...... .....++ ..+++.|+..+.+ ++.++..+
T Consensus 375 ~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~-----~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 448 (530)
T 1wa5_B 375 QIQAVIDANLIPPLVKLL-EVAEYKTKKEACWAISNASSGGLQR-----PDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 448 (530)
T ss_dssp HHHHHHHTTCHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHTTTC-----THHHHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCc-----HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 444444 36789999999 9999999999999999998764210 0011111 2378889988886 78999999
Q ss_pred HHHHHHHHhhcccCCC--CCCCcchHHHH-----HHHHHHhhccCChhhhhHHHHHHHHHHHHHHh
Q 039062 478 CGALYFLAQGYEDVGP--SSPLTPFFQEI-----VQSLLTVTHREDAGESRLRTAAYETLNEVVRS 536 (871)
Q Consensus 478 ~~~l~~l~~~~~~~~~--~~~l~~~~~~i-----l~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~ 536 (871)
+++|.+++........ .....+|...+ ++.+..+..++ +..+++.|..+|..+...
T Consensus 449 l~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~---~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 449 LDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNE---NDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCS---CHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHCCc
Confidence 9999999875432100 01234555443 44555555544 456777777777666543
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.70 E-value=8.8e-15 Score=169.42 Aligned_cols=516 Identities=12% Similarity=0.089 Sum_probs=314.3
Q ss_pred chHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcch
Q 039062 129 WPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQ 208 (871)
Q Consensus 129 ~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 208 (871)
+..-++.+++.+.++++..|..++..+...-.. .+ ....++.+...+. +.++.+|..|+.++.++.....
T Consensus 113 ~~~~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~----~i----~~g~ip~Lv~lL~--~~d~~vr~~A~~~L~~L~~~~~ 182 (780)
T 2z6g_A 113 FDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDA----EL----ATRAIPELTKLLN--DEDQVVVNKAAVMVHQLSKKEA 182 (780)
T ss_dssp -------------CCSCHHHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHTSHH
T ss_pred ccccHHHHHHHhcCccHHHHHHHHHHHHhhhHH----HH----HhCCHHHHHHHHC--CCCHHHHHHHHHHHHHHhCCCh
Confidence 344477888888888888888888888754221 12 2566777777777 7889999999999999875322
Q ss_pred hcccChhhHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHHHHHhHHhhHHhH-HHHHHHHHHHhhCCChhHHHHHHHHHHH
Q 039062 209 ANFSNDMERDYIMRVVCEATQS-AELKIRQAAFECLVSISSTYYEKLAPYM-QDIYSITAKAVREDEEPVALQAIEFWSS 286 (871)
Q Consensus 209 ~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~a~~~~~~ 286 (871)
.... ....+.+++.+...+.+ .++++|..|+.+|..+...... ..... ...++.++..+++.++.++..|+.++..
T Consensus 183 ~~~~-i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~-~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~n 260 (780)
T 2z6g_A 183 SRHA-IMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG-LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHN 260 (780)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hHHH-HHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1100 00013567777777764 4899999999999997654221 11111 1467778888888899999999999999
Q ss_pred HHHHHHhhhhhhcCCCCCCCCCchhhhHHhhh-hhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcC---C
Q 039062 287 ICDEEIDILEEYGSDFTGNSDIPCFYFIKQAL-PALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVG---D 362 (871)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~---~ 362 (871)
++.... .....+. ...++.++..+.. ++ +.++..+..+|..++.... .
T Consensus 261 La~~~~-------------------~~~~~v~~~g~v~~Lv~lL~~--~~-------~~v~~~a~~aL~~La~~~~e~~~ 312 (780)
T 2z6g_A 261 LLLHQE-------------------GAKMAVRLAGGLQKMVALLNK--TN-------VKFLAITTDCLQILAYGNQESKL 312 (780)
T ss_dssp HHHHST-------------------THHHHHHHTTHHHHHHHGGGC--CC-------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCCCh-------------------hhHHHHHHcCCHHHHHHHHhc--CC-------HHHHHHHHHHHHHHhcCChHHHH
Confidence 987421 1111111 2457777776653 11 4677777788877764210 0
Q ss_pred C-cccchHHHHHhhhcCCC-hhhHHHHHHHHHHhhcCCChhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhh
Q 039062 363 D-IVPLVIPFIEENIAKPD-WRQREAATYAFGSILEGPSPDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIFE 439 (871)
Q Consensus 363 ~-~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~ 439 (871)
. .-...++.+...+.+.+ ...++.++.++..++... ......+ ...++.++..+ .+.++.++..++++|..++.
T Consensus 313 ~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~--~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 313 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp HHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST--THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh--HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence 0 00122333444444433 345667788888888642 2222222 35789999999 99999999999999999987
Q ss_pred hhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchH-HHHHHHHHHhhccCCh
Q 039062 440 FLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFF-QEIVQSLLTVTHREDA 517 (871)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~-~~il~~l~~~l~~~~~ 517 (871)
.... ......+++.|++.+.+ ++.++..|+++|.+++.+-.+ ...... ...++.|+..+.+...
T Consensus 390 ~~~~---------~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~-----~~~~i~~~g~i~~Lv~lL~~~~~ 455 (780)
T 2z6g_A 390 AATK---------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK-----NKMMVCQVGGIEALVRTVLRAGD 455 (780)
T ss_dssp TCTT---------CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH-----HHHHHHTTTHHHHHHHHHHHHTT
T ss_pred cchh---------hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-----HHHHHHHCCCHHHHHHHHHccCC
Confidence 6531 12346789999999986 789999999999999653110 000000 1245555665554221
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCC--cHHH--HHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCC
Q 039062 518 GESRLRTAAYETLNEVVRSSTDE--TAPM--VLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGS 593 (871)
Q Consensus 518 ~~~~vr~~a~~~l~~l~~~~~~~--~~~~--~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 593 (871)
...+|..++.+|+.+....+.. .... -...+|.+++.+... +. ..++..+++++.+++.. .
T Consensus 456 -~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~--------~~----~~v~~~A~~aL~nLa~~--~ 520 (780)
T 2z6g_A 456 -REDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPP--------SH----WPLIKATVGLIRNLALC--P 520 (780)
T ss_dssp -CHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT--------CC----HHHHHHHHHHHHHHHSS--H
T ss_pred -HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCC--------Ch----HHHHHHHHHHHHHHhcC--H
Confidence 2378999999999996543321 0111 134567777666432 11 13667788998888731 1
Q ss_pred CCCchhhhhhhH-HHHHHHHHHHHcccC----------------------cchhhhHHHHHHHHHHHhhhhhhhhh--Hh
Q 039062 594 SEPTKYVFMQYA-DQIMGLFLRVFACRS----------------------ATVHEEAMLAIGALAYAAGLDFAKYM--PD 648 (871)
Q Consensus 594 ~~~~~~~~~~~~-~~i~~~l~~~l~~~~----------------------~~~~~~a~~~l~~l~~~~~~~~~~~l--~~ 648 (871)
. . ..... ..+++.++.++.+.+ .++++.++.+|+.++.. ......+ ..
T Consensus 521 ~----~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~~ 593 (780)
T 2z6g_A 521 A----N-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD--IHNRIVIRGLN 593 (780)
T ss_dssp H----H-HHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS--HHHHHHHHHTC
T ss_pred H----H-HHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC--hhhHHHHHHCC
Confidence 1 0 11111 245666666665532 23556677777777532 1111122 34
Q ss_pred HHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHH--HHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccC
Q 039062 649 FYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCD--GIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN 726 (871)
Q Consensus 649 i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~ 726 (871)
++|.|+..+.+. +..++..|+.+|+.++.. ......+. ..++.|.+++.++ +.++|..|..++..++..-+..
T Consensus 594 ~i~~Lv~lL~~~-~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~i~~L~~Ll~~~--~~~Vr~~A~~aL~~l~~~~~~~ 668 (780)
T 2z6g_A 594 TIPLFVQLLYSP-IENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSR--NEGVATYAAAVLFRMSEDKPQD 668 (780)
T ss_dssp CHHHHHHGGGCS-CHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHTTSCTT
T ss_pred cHHHHHHHHcCC-CHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCChHh
Confidence 788888888865 458999999999888632 11111122 3567788888877 7889999999999999877655
Q ss_pred hH
Q 039062 727 FE 728 (871)
Q Consensus 727 ~~ 728 (871)
+.
T Consensus 669 ~~ 670 (780)
T 2z6g_A 669 YK 670 (780)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 36
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.67 E-value=4.6e-15 Score=165.58 Aligned_cols=402 Identities=13% Similarity=0.128 Sum_probs=265.5
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccC-cHHHHHHHHHHHHHHHHHhHHh
Q 039062 175 ILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSA-ELKIRQAAFECLVSISSTYYEK 253 (871)
Q Consensus 175 i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~ 253 (871)
.++.++..+. ++++.+|..|+.++..++...............+++.+.+++.++ ++.++..|+.+|..++...+..
T Consensus 88 ~i~~lv~~L~--s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 88 ELPQMTQQLN--SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp CHHHHHHHHS--CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 3556667777 568999999999999987542111000111134678888888887 8999999999999998743332
Q ss_pred hHHhH-HHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcc
Q 039062 254 LAPYM-QDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQ 332 (871)
Q Consensus 254 ~~~~~-~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 332 (871)
....+ ...++.++..+.+++++++..|+..+..++..... ....+ .-...+|.++..+..
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~----------------~~~~~--~~~~~l~~L~~ll~~- 226 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD----------------YRDYV--LQCNAMEPILGLFNS- 226 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHH----------------HHHHH--HHTTCHHHHHHGGGS-
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc----------------chHHH--HHcCcHHHHHHHhcc-
Confidence 22222 24566666677788999999999999888753110 00111 112456777776643
Q ss_pred cCCcccccccccHhHHHHHHHHHHHHHc-CC---CcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHH
Q 039062 333 EEDQDQEEGAWNIAMAGGTCLGLVARTV-GD---DIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVN 408 (871)
Q Consensus 333 ~~d~~~~~~~~~~r~~a~~~l~~l~~~~-~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~ 408 (871)
.+ ..++..|..+|..++... +. .....+++.+...+.++++.+|..++.+++.++... ++.....+.
T Consensus 227 -~~-------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~-~~~~~~~~~ 297 (530)
T 1wa5_B 227 -NK-------PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP-QEAIQAVID 297 (530)
T ss_dssp -CC-------HHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC-HHHHHHHHH
T ss_pred -CC-------HHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHh
Confidence 11 367888899999988654 21 123467788888888899999999999999999874 344443333
Q ss_pred -HHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhH-HHHHHHHHHhccC-ChHHHHHHHHHHHHHH
Q 039062 409 -VALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANC-QQIITVLLQSMKD-TPNVAEKACGALYFLA 485 (871)
Q Consensus 409 -~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~~il~~l~~~l~d-~~~v~~~a~~~l~~l~ 485 (871)
.+++.++..+ .++++.+|..++++|+.++..... .....+ ..++|.|+..+.+ ++.++..|+++|.+++
T Consensus 298 ~~~v~~Lv~lL-~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~ 369 (530)
T 1wa5_B 298 VRIPKRLVELL-SHESTLVQTPALRAVGNIVTGNDL-------QTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT 369 (530)
T ss_dssp TTCHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHH-------HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHH-CCCChhhHHHHHHHHHHHHcCCHH-------HHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 6789999999 999999999999999999864321 111111 3588899999986 7899999999999997
Q ss_pred hhcccCCCCCCCcchH-HHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCC--CcHHHHH--HHHHHHHHHHHHhh
Q 039062 486 QGYEDVGPSSPLTPFF-QEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTD--ETAPMVL--QLVPVIMMELHKTL 560 (871)
Q Consensus 486 ~~~~~~~~~~~l~~~~-~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~--~ll~~l~~~l~~~~ 560 (871)
.+.. +....++ ..+++.|+..+.+. +..+|..++.+|+.++..... ....++. .+++.++..+...
T Consensus 370 ~~~~-----~~~~~~~~~~~l~~L~~lL~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~- 440 (530)
T 1wa5_B 370 AGNT-----EQIQAVIDANLIPPLVKLLEVA---EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA- 440 (530)
T ss_dssp TSCH-----HHHHHHHHTTCHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC-
T ss_pred cCCH-----HHHHHHHHCCCHHHHHHHHhcC---CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC-
Confidence 5321 1111112 23456666666655 458999999999999987543 3333332 4777787776431
Q ss_pred hccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCc-hhhhhhhHHH-----HHHHHHHHHcccCcchhhhHHHHHHHH
Q 039062 561 EGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPT-KYVFMQYADQ-----IMGLFLRVFACRSATVHEEAMLAIGAL 634 (871)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~~~-----i~~~l~~~l~~~~~~~~~~a~~~l~~l 634 (871)
+ +.++..+++++..++......... .....++... .++.+..++++.+..+++.|..++..+
T Consensus 441 --------~----~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~ 508 (530)
T 1wa5_B 441 --------D----NRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508 (530)
T ss_dssp --------C----HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred --------C----HHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2 246677888888887654321000 0001233332 356666766667777777777777665
Q ss_pred H
Q 039062 635 A 635 (871)
Q Consensus 635 ~ 635 (871)
.
T Consensus 509 ~ 509 (530)
T 1wa5_B 509 F 509 (530)
T ss_dssp S
T ss_pred C
Confidence 4
No 37
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.67 E-value=2.8e-13 Score=152.56 Aligned_cols=508 Identities=13% Similarity=0.065 Sum_probs=308.2
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHH
Q 039062 11 NAQSIDGTVRKHAEESLKQFQEQ--NLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDAN 88 (871)
Q Consensus 11 ~~~s~~~~~r~~A~~~L~~~~~~--~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~ 88 (871)
.+.+++...|+.|-+.|--+... +.+.........+.+ .+...|+++.+.+..+.+ -+++
T Consensus 42 ~l~~~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~s--~~~~~Krl~Yl~~~~~~~----------------~~~e 103 (618)
T 1w63_A 42 SFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIAS--QKFTDKRIGYLGAMLLLD----------------ERQD 103 (618)
T ss_dssp HHTTTCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHHS--SSHHHHHHHHHHHHHHCC----------------CCHH
T ss_pred HhhCCCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcC--CchHHHHHHHHHHHHHhC----------------CCcH
Confidence 44455555566555555433222 222333334444553 467888888888877664 2455
Q ss_pred HHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccc
Q 039062 89 VKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVE 168 (871)
Q Consensus 89 ~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~ 168 (871)
..--+.+.+.+-|.++++.+|..|..+++.+.... -.+.+++.+..++.++++.+|.+|..++..++... |+.+
T Consensus 104 ~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~----~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v- 177 (618)
T 1w63_A 104 VHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSE----MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELM- 177 (618)
T ss_dssp HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGG-
T ss_pred HHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHH-
Confidence 55567788888999999999999999999987432 34677999999999999999999999999999876 6544
Q ss_pred hhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcc-cChhhHHHHHHHHHHhhc-----------cCcHHHH
Q 039062 169 QDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANF-SNDMERDYIMRVVCEATQ-----------SAELKIR 236 (871)
Q Consensus 169 ~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~-~~~~~~~~i~~~l~~~l~-----------~~~~~~~ 236 (871)
+.+++.+...+. |.++.|+.+|+.++..+....+... ......+.++..+.+... .+++..+
T Consensus 178 ----~~~~~~l~~lL~--D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q 251 (618)
T 1w63_A 178 ----EMFLPATKNLLN--EKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ 251 (618)
T ss_dssp ----GGGGGGTTTSTT--CCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred ----HHHHHHHHHHhC--CCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence 345566667777 8999999999999999765432210 000112334444443321 2478888
Q ss_pred HHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHh---hCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhh
Q 039062 237 QAAFECLVSISSTYYEKLAPYMQDIYSITAKAV---REDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYF 313 (871)
Q Consensus 237 ~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (871)
..+++++..+....+..-.. +..++..+.... ++.+..+...|+.++..+... ...
T Consensus 252 ~~il~~L~~l~~~~~~~~~~-~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~--------------------~~l 310 (618)
T 1w63_A 252 VRILRLLRILGRNDDDSSEA-MNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE--------------------SGL 310 (618)
T ss_dssp HHHHHHHHHHTTTCHHHHHT-THHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC--------------------HHH
T ss_pred HHHHHHHHHhCCCCHHHHHH-HHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC--------------------HHH
Confidence 88888888877654432211 112222222111 122345666666655443210 011
Q ss_pred HHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHH
Q 039062 314 IKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGS 393 (871)
Q Consensus 314 ~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~ 393 (871)
. ...++.+...+.. .| .++|..|..+|..++...+..+ ......+...+.+++..+|..++.++..
T Consensus 311 ~----~~a~~~L~~~L~~--~d-------~~vr~~aL~~L~~i~~~~p~~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~ 376 (618)
T 1w63_A 311 R----VLAINILGRFLLN--ND-------KNIRYVALTSLLKTVQTDHNAV-QRHRSTIVDCLKDLDVSIKRRAMELSFA 376 (618)
T ss_dssp H----HHHHHHHHHHHTC--SS-------TTTHHHHHHHHHHHHHHHHHHH-GGGHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHhC--CC-------CchHHHHHHHHHHHHhhCHHHH-HHHHHHHHHHccCCChhHHHHHHHHHHH
Confidence 1 1234444444432 22 2689999999999988765433 3344556677889999999999999999
Q ss_pred hhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChH
Q 039062 394 ILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPN 472 (871)
Q Consensus 394 l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~ 472 (871)
++.... +..+++.+...+ .+.++.+|..++.++++++..++. .....++.+++.+.+ ...
T Consensus 377 l~~~~n-------v~~iv~eL~~~l-~~~d~e~r~~~v~~I~~la~k~~~-----------~~~~~v~~ll~lL~~~~~~ 437 (618)
T 1w63_A 377 LVNGNN-------IRGMMKELLYFL-DSCEPEFKADCASGIFLAAEKYAP-----------SKRWHIDTIMRVLTTAGSY 437 (618)
T ss_dssp HCCSSS-------THHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHSSCC-----------CHHHHHHHHHHHHHHTGGG
T ss_pred Hccccc-------HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHhCc-----------cHHHHHHHHHHHHHhccch
Confidence 988542 234566777778 788899999999999999987742 234556666666664 334
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCC---------CcHH
Q 039062 473 VAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTD---------ETAP 543 (871)
Q Consensus 473 v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~---------~~~~ 543 (871)
++..++..+..++... + .+. ..++..+...+.+... ...+...+++++|.+...... ...+
T Consensus 438 v~~~~~~~l~~ii~~~-----p-~l~---~~~v~~L~~~l~~~~~-~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~ 507 (618)
T 1w63_A 438 VRDDAVPNLIQLITNS-----V-EMH---AYTVQRLYKAILGDYS-QQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTE 507 (618)
T ss_dssp SCSSHHHHHHHHHHHS-----C-STH---HHHHHHHHHHHHHCCS-CSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCH
T ss_pred hHHHHHHHHHHHHhcC-----h-hHH---HHHHHHHHHHHhcccc-cHHHHHHHHHHHhhhHHHhcccccccccccCCCH
Confidence 5555566666666542 1 222 3344455555543211 123445789999999876532 1111
Q ss_pred HHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcch
Q 039062 544 MVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATV 623 (871)
Q Consensus 544 ~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 623 (871)
..+++.+...+.... ++ ..++..++.++..+....+. . .+.+...+-.+.++.+.++
T Consensus 508 --~~~~~~l~~~l~~~~-------~~----~~vr~~~lta~~Kl~~~~~~-------~---~~~l~~~L~~~~~~~d~ev 564 (618)
T 1w63_A 508 --DEVLDILESVLISNM-------ST----SVTRGYALTAIMKLSTRFTC-------T---VNRIKKVVSIYGSSIDVEL 564 (618)
T ss_dssp --HHHHHHHHHHHHSTT-------CC----HHHHHHHHHHHHHHHTTCSS-------C---HHHHHHHHHHHTTCSCHHH
T ss_pred --HHHHHHHHHHHhccC-------CC----HHHHHHHHHHHHHHHHhCcc-------h---HHHHHHHHHHhcCCCCHHH
Confidence 223333333332210 11 13566677777666654332 2 2223333333445567789
Q ss_pred hhhHHHHHHHHH
Q 039062 624 HEEAMLAIGALA 635 (871)
Q Consensus 624 ~~~a~~~l~~l~ 635 (871)
|+.|...+.-+.
T Consensus 565 rdRA~~y~~ll~ 576 (618)
T 1w63_A 565 QQRAVEYNALFK 576 (618)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999998777664
No 38
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.67 E-value=1.3e-12 Score=147.04 Aligned_cols=484 Identities=12% Similarity=0.093 Sum_probs=267.3
Q ss_pred hhcCCchHHHHH-HHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 039062 100 TLTSTVADARST-SSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTA 178 (871)
Q Consensus 100 ~l~~~~~~vr~~-~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~ 178 (871)
.|.+++...|.. ...++..... + ..-+.++....+.+.+++...|.-+...+..+++.- ++..--.++.
T Consensus 42 ~l~~~~~~~k~~~l~kli~~~~~---G-~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~------~e~~~l~in~ 111 (618)
T 1w63_A 42 SFREEDNTYRCRNVAKLLYMHML---G-YPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDER------QDVHLLMTNC 111 (618)
T ss_dssp HHTTTCTTTHHHHHHHHHHHHHT---T-CCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC------HHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHHHHc---C-CCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCC------cHHHHHHHHH
Confidence 456655444433 3333333222 2 234556677778888888888777766666655432 2333455677
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhH
Q 039062 179 VVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYM 258 (871)
Q Consensus 179 l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 258 (871)
+.+-+. ++++.+|..|+++++.+.. .+..+.+++.+..++.++++.+|+.|+.++..+....|+.+..++
T Consensus 112 l~kDL~--~~n~~vr~lAL~~L~~i~~--------~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~ 181 (618)
T 1w63_A 112 IKNDLN--HSTQFVQGLALCTLGCMGS--------SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFL 181 (618)
T ss_dssp HHHHHS--CSSSHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGG
T ss_pred HHHhcC--CCCHhHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHH
Confidence 788888 8999999999999999652 123467788888999999999999999999999998887665433
Q ss_pred HHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcc-
Q 039062 259 QDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQD- 337 (871)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~- 337 (871)
+.+...+.+.++.++..|+.++..+++...+. ...+...+|.++..|.+.+... ..++
T Consensus 182 ----~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~----------------~~~~~~~v~~l~~~L~~~~~~~-~~~~~ 240 (618)
T 1w63_A 182 ----PATKNLLNEKNHGVLHTSVVLLTEMCERSPDM----------------LAHFRKLVPQLVRILKNLIMSG-YSPEH 240 (618)
T ss_dssp ----GGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH----------------HHHHHTTHHHHHHHHHHHHHSC-CCTTT
T ss_pred ----HHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH----------------HHHHHHHHHHHHHHHHHHHcCC-CCccc
Confidence 33334677888999999999988887542111 0123333444444433332211 1111
Q ss_pred ---cccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhh------cCCChhhHHHHHHHHHHhhcCCChhhhhHHHH
Q 039062 338 ---QEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENI------AKPDWRQREAATYAFGSILEGPSPDKLLHIVN 408 (871)
Q Consensus 338 ---~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l------~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~ 408 (871)
...+.|-.. ...+++..++...+ ..-+.+.+.+...+ .+.+..+.+.++.++..+... +. ...
T Consensus 241 ~~~~~~~~~~q~-~il~~L~~l~~~~~-~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~--~~----l~~ 312 (618)
T 1w63_A 241 DVSGISDPFLQV-RILRLLRILGRNDD-DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE--SG----LRV 312 (618)
T ss_dssp CSSSSSCHHHHH-HHHHHHHHHTTTCH-HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC--HH----HHH
T ss_pred cccCCCCChHHH-HHHHHHHHhCCCCH-HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC--HH----HHH
Confidence 011235332 23445544443211 11122333333332 223345666666666665331 11 122
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhh
Q 039062 409 VALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQG 487 (871)
Q Consensus 409 ~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~ 487 (871)
..++.+...+ .++++.+|+.++.+++.++...+ ..+....+.++.++.| +..||..+..++..++.
T Consensus 313 ~a~~~L~~~L-~~~d~~vr~~aL~~L~~i~~~~p-----------~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~- 379 (618)
T 1w63_A 313 LAINILGRFL-LNNDKNIRYVALTSLLKTVQTDH-----------NAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVN- 379 (618)
T ss_dssp HHHHHHHHHH-TCSSTTTHHHHHHHHHHHHHHHH-----------HHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHH-hCCCCchHHHHHHHHHHHHhhCH-----------HHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-
Confidence 3456666677 88888899999999888887653 1233344566666665 56777777777766642
Q ss_pred cccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCCh
Q 039062 488 YEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSS 567 (871)
Q Consensus 488 ~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~ 567 (871)
... ++.++..+...+.+. +..+|..++.+|+.++...+.....++
T Consensus 380 ------~~n----v~~iv~eL~~~l~~~---d~e~r~~~v~~I~~la~k~~~~~~~~v---------------------- 424 (618)
T 1w63_A 380 ------GNN----IRGMMKELLYFLDSC---EPEFKADCASGIFLAAEKYAPSKRWHI---------------------- 424 (618)
T ss_dssp ------SSS----THHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHSSCCCHHHHH----------------------
T ss_pred ------ccc----HHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhCccHHHHH----------------------
Confidence 122 233444444444433 235555666666666555443333332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhH
Q 039062 568 DEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMP 647 (871)
Q Consensus 568 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~ 647 (871)
+.++.++......++..+...+..++...++.-...+.
T Consensus 425 ------------------------------------------~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~ 462 (618)
T 1w63_A 425 ------------------------------------------DTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQ 462 (618)
T ss_dssp ------------------------------------------HHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHH
T ss_pred ------------------------------------------HHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHH
Confidence 23333333322233333444444444332211111122
Q ss_pred hHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhc----ccc---cHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHH
Q 039062 648 DFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEK----ILP---YCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIA 720 (871)
Q Consensus 648 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~----~~~---~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~ 720 (871)
.++..+.... ..+ .....++|++|.++..+... ..| .-..+++.+...+++...+..+|..++.++..+.
T Consensus 463 ~L~~~l~~~~--~~~-~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~ 539 (618)
T 1w63_A 463 RLYKAILGDY--SQQ-PLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLS 539 (618)
T ss_dssp HHHHHHHHCC--SCS-HHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccc--ccH-HHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 3333332211 122 34456899999998766421 001 1123444444444321125779999999999998
Q ss_pred Hhhcc
Q 039062 721 LAIGE 725 (871)
Q Consensus 721 ~~~~~ 725 (871)
...++
T Consensus 540 ~~~~~ 544 (618)
T 1w63_A 540 TRFTC 544 (618)
T ss_dssp TTCSS
T ss_pred HhCcc
Confidence 87764
No 39
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.66 E-value=1.1e-13 Score=157.84 Aligned_cols=509 Identities=10% Similarity=0.047 Sum_probs=318.7
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhc
Q 039062 131 ELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQAN 210 (871)
Q Consensus 131 ~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 210 (871)
..++.|...+.++++.+|..|+.+|..++... ............++.++..+.+ +.++.+|..|+.+|.++..... .
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~-~~~~~~~~~A~~~L~~Ls~~~~-~ 90 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHHRE-G 90 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTTSHH-H
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcChh-h
Confidence 35777788888889999999999999998764 2110001123667788888874 4589999999999998654211 1
Q ss_pred ccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhH-HHHHHHHHHHhhCCChhHHHHHHHHHHHHHH
Q 039062 211 FSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYM-QDIYSITAKAVREDEEPVALQAIEFWSSICD 289 (871)
Q Consensus 211 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 289 (871)
. ........++.+.+++.++++.++..++.+|..++........... ...++.++..+.+.+..++..++.++..++.
T Consensus 91 ~-~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 91 L-LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp H-HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred H-HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 0 0001123678888899999999999999999999976533322222 2567777888888888777777777776663
Q ss_pred HHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcC--CCcc-c
Q 039062 290 EEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVG--DDIV-P 366 (871)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~-~ 366 (871)
...+. ...+.. ...++.++..+...+ . ...+..+..+|..++..-. ..++ .
T Consensus 170 ~~~~~---------------~~~i~~---~g~v~~Lv~lL~~~~--~------~~~~~~a~~~L~nLs~~~~~~~~l~~~ 223 (644)
T 2z6h_A 170 GNQES---------------KLIILA---SGGPQALVNIMRTYT--Y------EKLLWTTSRVLKVLSVCSSNKPAIVEA 223 (644)
T ss_dssp TCHHH---------------HHHHHH---TTHHHHHHHHHTTCC--C------HHHHHHHHHHHHHHTTCTTHHHHHHHT
T ss_pred cCcHH---------------HHHHHH---cCChHHHHHHHHcCC--h------HHHHHHHHHHHHHHhcCcccHHHHHHC
Confidence 11000 001111 134666666664321 1 1345566677776653211 0111 2
Q ss_pred chHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCC
Q 039062 367 LVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTI 446 (871)
Q Consensus 367 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~ 446 (871)
..++.+...+.+.+...|+.++.++..++.... .. .....+++.++..+ .++++.+|..++++|+.++.....
T Consensus 224 g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~-~~--~~~~~~i~~Lv~lL-~~~d~~v~~~a~~aL~~L~~~~~~--- 296 (644)
T 2z6h_A 224 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT-KQ--EGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYK--- 296 (644)
T ss_dssp THHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCT-TC--CSCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHH---
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcch-hh--hhhhhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHH---
Confidence 356667777778888999999999999987642 21 12346889999999 999999999999999999764320
Q ss_pred CCCccchhhHHHHHHHHHHhccC---ChHHHHHHHHHHHHHHhhcccCCCCCCCcc-h-HHHHHHHHHHhhccCChhhhh
Q 039062 447 GTPIITQANCQQIITVLLQSMKD---TPNVAEKACGALYFLAQGYEDVGPSSPLTP-F-FQEIVQSLLTVTHREDAGESR 521 (871)
Q Consensus 447 ~~~~~~~~~~~~il~~l~~~l~d---~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~-~-~~~il~~l~~~l~~~~~~~~~ 521 (871)
....-.-...++.|++.+.+ .+.++..|+.+|.+++....+ ...... . -...++.+...+.+.+ +..
T Consensus 297 ---~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~---~~~~q~~v~~~~~l~~L~~lL~~~~--~~~ 368 (644)
T 2z6h_A 297 ---NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE---AEMAQNAVRLHYGLPVVVKLLHPPS--HWP 368 (644)
T ss_dssp ---HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT---HHHHHHHHHHTTHHHHHHHTTSTTC--CHH
T ss_pred ---HHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCch---HHHHHHHHHHccChHHHHHHhCccC--chH
Confidence 00011112367888887764 379999999999999632110 000000 0 1235677778887653 357
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHhhhc-c-----------CCChhhHHHHHHHHHHHHHHHHHHH
Q 039062 522 LRTAAYETLNEVVRSSTDETAPMV-LQLVPVIMMELHKTLEG-Q-----------KLSSDEREKQGELQGLLCGCLQVII 588 (871)
Q Consensus 522 vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~l~~l~ 588 (871)
++..++.+++.+....... .... ..++|.+++.+...... + ...... ..+++..++.++..++
T Consensus 369 v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~---~~~v~~~a~~aL~~La 444 (644)
T 2z6h_A 369 LIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR---MEEIVEGCTGALHILA 444 (644)
T ss_dssp HHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSC---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccccc---HHHHHHHHHHHHHHHh
Confidence 8999999999998653322 2222 45777777777653110 0 000000 1235556777777665
Q ss_pred HHhCCCCCchhhhhhh--HHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhH--hHHHHHHhhhcCCcchh
Q 039062 589 QKLGSSEPTKYVFMQY--ADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMP--DFYKYLEMGLQNFEEYQ 664 (871)
Q Consensus 589 ~~~~~~~~~~~~~~~~--~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~~~~~~~ 664 (871)
..- . .... -...++.++.++.+.+..++..+..+|+.++.. +.....+. ..++.|...+.+. +.+
T Consensus 445 ~~~--~------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~i~~~g~l~~L~~ll~~~-~~~ 513 (644)
T 2z6h_A 445 RDV--H------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSR-NEG 513 (644)
T ss_dssp TSH--H------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHHTTCS-CHH
T ss_pred cCH--H------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHcCChhHHHHHHcCC-CHH
Confidence 321 0 1111 124678888999988888999999999998742 22333332 3577777777654 569
Q ss_pred HHHHHHHHHHHHHHHhhhcccccHHH-HHHHHHHHccCC
Q 039062 665 VCAVTVGVVGDICRALEEKILPYCDG-IMTQLLKDLSSN 702 (871)
Q Consensus 665 v~~~a~~~l~~l~~~~~~~~~~~~~~-i~~~l~~~l~~~ 702 (871)
++..|.++|+.+....+ ..|... -++.+...+.+.
T Consensus 514 vr~~A~~aL~~l~~~~~---~~~~~~~~~~il~~~~~~~ 549 (644)
T 2z6h_A 514 VATYAAAVLFRMSEDKP---QDYKKRLSVELTSSLFRTE 549 (644)
T ss_dssp HHHHHHHHHHHHTTTSC---HHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHhccCc---HhhhcccchHHHHHHHhCC
Confidence 99999999998865432 223221 245555566655
No 40
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.65 E-value=2.1e-14 Score=160.44 Aligned_cols=404 Identities=13% Similarity=0.125 Sum_probs=267.6
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCc-HHHHHHHHHHHHHHHHHhHHhh
Q 039062 176 LTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAE-LKIRQAAFECLVSISSTYYEKL 254 (871)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~ 254 (871)
++.++..+. ++++.+|..|+.++..++...............+++.+.+++.+++ +.++..|+.+|..++...+...
T Consensus 76 l~~lv~~L~--s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 76 LPAMIGGVY--SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HHHHHHHHT--SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 455666776 5789999999999999876432111111112346788888888776 9999999999999997544433
Q ss_pred HHhHH-HHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhccc
Q 039062 255 APYMQ-DIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQE 333 (871)
Q Consensus 255 ~~~~~-~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 333 (871)
...+. ..++.++..+.+++++++..|+.++..++...... ...+. -...++.++..+...
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~----------------~~~i~--~~g~l~~Ll~lL~~~- 214 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC----------------RDLVL--ANGALLPLLAQLNEH- 214 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH----------------HHHHH--HTTCHHHHHHTCCTT-
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh----------------HHHHH--HCCcHHHHHHHHhcC-
Confidence 33333 47777888888899999999999999997642110 01111 113566666665321
Q ss_pred CCcccccccccHhHHHHHHHHHHHHHcCCC---cccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH-HH
Q 039062 334 EDQDQEEGAWNIAMAGGTCLGLVARTVGDD---IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV-NV 409 (871)
Q Consensus 334 ~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l-~~ 409 (871)
. ++.++..+..+|..++...+.. ....+++.+...+.++++.++..++.+++.++.+. .......+ ..
T Consensus 215 ~-------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g 286 (528)
T 4b8j_A 215 T-------KLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT-NDKIQAVIEAG 286 (528)
T ss_dssp C-------CHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTT
T ss_pred C-------CHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHcC
Confidence 1 1478888899999988764322 23567888888889999999999999999999864 23333323 35
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHhh
Q 039062 410 ALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD--TPNVAEKACGALYFLAQG 487 (871)
Q Consensus 410 i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~~l~~l~~~ 487 (871)
+++.++..+ .++++.++..|+++|++++..... ......-..++|.|+..+.+ ++.++..|+++|.+++.+
T Consensus 287 ~v~~Lv~lL-~~~~~~v~~~a~~~L~nl~~~~~~------~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 287 VCPRLVELL-LHPSPSVLIPALRTVGNIVTGDDA------QTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359 (528)
T ss_dssp CHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHH------HHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHH-cCCChhHHHHHHHHHHHHHcCCHH------HHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence 789999999 999999999999999999874321 00111113468888888875 579999999999999753
Q ss_pred cccCCCCCCCcchH-HHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHHHHHhhhccC
Q 039062 488 YEDVGPSSPLTPFF-QEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMV--LQLVPVIMMELHKTLEGQK 564 (871)
Q Consensus 488 ~~~~~~~~~l~~~~-~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~ 564 (871)
.. +.....+ ..+++.|+..+.+. +..+|..|+.+|+.++.........++ ..+++.++..+...
T Consensus 360 ~~-----~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~----- 426 (528)
T 4b8j_A 360 NK-----DQIQAVINAGIIGPLVNLLQTA---EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP----- 426 (528)
T ss_dssp CH-----HHHHHHHHTTCHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS-----
T ss_pred CH-----HHHHHHHHCCCHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCC-----
Confidence 11 1111111 14456666776665 457999999999999987443333333 35677777776432
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCc-hhhhhhhHHH-----HHHHHHHHHcccCcchhhhHHHHHHHHHH
Q 039062 565 LSSDEREKQGELQGLLCGCLQVIIQKLGSSEPT-KYVFMQYADQ-----IMGLFLRVFACRSATVHEEAMLAIGALAY 636 (871)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~~~-----i~~~l~~~l~~~~~~~~~~a~~~l~~l~~ 636 (871)
+. .++..++.++..++......... .....++... .++.+..+..+.+.++++.|..++..+..
T Consensus 427 ----d~----~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 427 ----DI----RIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp ----CH----HHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred ----CH----HHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 11 35667888888887654320000 0001123222 25666666666777788888888777653
No 41
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.64 E-value=2e-12 Score=151.98 Aligned_cols=639 Identities=12% Similarity=0.101 Sum_probs=354.9
Q ss_pred ChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHHhhhcchhc--c-cChhhHHH
Q 039062 144 PAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASE-MNNDVRLAATRALYNALSFAQAN--F-SNDMERDY 219 (871)
Q Consensus 144 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~~~vr~~al~~l~~~~~~~~~~--~-~~~~~~~~ 219 (871)
++..|..|...|..+-+. + .....+...+.++. .+..+|..|+.++.+.+...+.. + .....++.
T Consensus 21 d~~~r~~A~~~L~~~q~s--p---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ 89 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS--S---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDS 89 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS--T---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC--h---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHH
Confidence 677888888888765332 2 22233444554322 28999999999999988711110 0 11122344
Q ss_pred HHHHHHHhh-ccCcHHHHHHHHHHHHHHHHH-hHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhh
Q 039062 220 IMRVVCEAT-QSAELKIRQAAFECLVSISST-YYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEE 297 (871)
Q Consensus 220 i~~~l~~~l-~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~ 297 (871)
+++.+.... .....-+|...+.++..++.. +|..|...++++++.+-.. +. .......+..+..+.++-.+.
T Consensus 90 ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~--~~-~~~~~~~LriL~~i~EEv~~~--- 163 (980)
T 3ibv_A 90 VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS--SQ-SEFSNFYLKVLLSIGDEIADS--- 163 (980)
T ss_dssp HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH--CC-HHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCC--Ch-hHHHHHHHHHHHHhHHHHHhc---
Confidence 444444421 123567999999999999987 6788888888888855332 11 111111222222222221000
Q ss_pred hcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhc
Q 039062 298 YGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIA 377 (871)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~ 377 (871)
. +..... ...|. ...-+.+....-..+.+..+..+.....
T Consensus 164 -------~--~~~~~~-----------------------------~~~r~--~~lkd~m~~~~~~~i~~~~~~iL~~~~~ 203 (980)
T 3ibv_A 164 -------L--VLKTDV-----------------------------QIQKD--NLVKDAIRANDMSDIVSFVYEMMLAYSN 203 (980)
T ss_dssp -------C--SCCCHH-----------------------------HHHHH--HHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred -------c--cccCHH-----------------------------HHhhh--HHHHHHHHhccHHHHHHHHHHHHHHHhc
Confidence 0 000000 00010 0000111110000111223333333333
Q ss_pred CCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHH
Q 039062 378 KPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQ 457 (871)
Q Consensus 378 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 457 (871)
+.+...+..++.+++....-.....+.. ..+++.++..+ .+ +.+|.+|+.||..+...... .....
T Consensus 204 ~~~~~l~~~~L~~l~s~i~wi~~~~i~~--~~ll~~l~~~L-~~--~~~r~~A~ecL~ei~~k~~~---------~~~k~ 269 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSWININLIVN--EPCMNLLYSFL-QI--EELRCAACETMTEIVNKKMK---------PLEKL 269 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCHHHHHC--HHHHHHHHHHT-TS--HHHHHHHHHHHHHHHHSCCC---------HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhcCHHhhhc--chHHHHHHHHc-CC--hHHHHHHHHHHHHHHHcCCC---------hhhHH
Confidence 4556778888999999888653222211 57888899999 65 78999999999988876431 11111
Q ss_pred HHHHHH-----HHhc---cCChHHHHHHHHHHHHHHhhcccC-CCCC--------CCcchHHHHHHHHHHhhccCChhhh
Q 039062 458 QIITVL-----LQSM---KDTPNVAEKACGALYFLAQGYEDV-GPSS--------PLTPFFQEIVQSLLTVTHREDAGES 520 (871)
Q Consensus 458 ~il~~l-----~~~l---~d~~~v~~~a~~~l~~l~~~~~~~-~~~~--------~l~~~~~~il~~l~~~l~~~~~~~~ 520 (871)
.++..+ +..+ .++..+.++.+..+..+.+.+... ..++ ...+++..+++.++.++..++.
T Consensus 270 ~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~d--- 346 (980)
T 3ibv_A 270 NLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYD--- 346 (980)
T ss_dssp HHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSH---
T ss_pred HHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCch---
Confidence 222211 1111 124445544444443332221110 0011 1226788899999999888752
Q ss_pred hHHHHHHHHHHHHHHhcC---------CCcHHHHHHHHHHHHHHHHHhhhccCCC---hhhHHHHHHHHHHHHHHHHHHH
Q 039062 521 RLRTAAYETLNEVVRSST---------DETAPMVLQLVPVIMMELHKTLEGQKLS---SDEREKQGELQGLLCGCLQVII 588 (871)
Q Consensus 521 ~vr~~a~~~l~~l~~~~~---------~~~~~~~~~ll~~l~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~ 588 (871)
.+-..++..+..++.... ..+.+++..+++.+++.+.-.-...-.. .++.+.+.+.|.... .+-..+
T Consensus 347 eVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~ 425 (980)
T 3ibv_A 347 ETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTI 425 (980)
T ss_dssp HHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHH
Confidence 566667777777775432 1234555555555554433211000011 144555666776555 555555
Q ss_pred HHhCCCCCchhhhhhh-HHHHHHHHHHHHc---ccCcchhhhHHHHHHHHHHHhhhh------hhhhhHhHHHHHHhhhc
Q 039062 589 QKLGSSEPTKYVFMQY-ADQIMGLFLRVFA---CRSATVHEEAMLAIGALAYAAGLD------FAKYMPDFYKYLEMGLQ 658 (871)
Q Consensus 589 ~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~---~~~~~~~~~a~~~l~~l~~~~~~~------~~~~l~~i~~~l~~~l~ 658 (871)
..++++. +..+ .+.+.+.+-+.+. ..++..+|.++.+++.++..+... ..++++.+++.+...++
T Consensus 426 ~~l~~~~-----~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~ 500 (980)
T 3ibv_A 426 NSIDSSL-----FSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTT 500 (980)
T ss_dssp HHHCHHH-----HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHH
T ss_pred HhcChHH-----HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHh
Confidence 5555430 2221 1134444444442 346788999999999998876532 22467777777776654
Q ss_pred ----CCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHH--HccCCCCCCcCCchHHHHHHHHHHhhccChHHhHH
Q 039062 659 ----NFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLK--DLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLM 732 (871)
Q Consensus 659 ----~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~--~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~ 732 (871)
+...+.+|..++++++..++.+... ..|++.+++.++. .+.++ +..++..|+.++.++++.++..+.||++
T Consensus 501 s~i~~~~hp~V~~~~~~~l~rys~~~~~~-~~~l~~~L~~ll~~~gl~~~--~~~V~~~a~~af~~f~~~~~~~L~~~~~ 577 (980)
T 3ibv_A 501 SQVCRHPHPLVQLLYMEILVRYASFFDYE-SAAIPALIEYFVGPRGIHNT--NERVRPRAWYLFYRFVKSIKKQVVNYTE 577 (980)
T ss_dssp SSTTTCCCHHHHHHHHHHHHHTGGGGGTC-CTTHHHHHHHHTSTTTTTCC--CTTTHHHHHHHHHHHHHHTTTTCSSSHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHhccccccCC--ChhHHHHHHHHHHHHHHHhhHHhhhHHH
Confidence 2345689999999999988877642 3578888998888 77766 6789999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCC-C------hhHHHH-HHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHH----HHHH
Q 039062 733 YAMPMLQSAADLSAHTANV-D------DDMTEY-TNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQF----LDSM 800 (871)
Q Consensus 733 ~i~~~l~~~l~~~~~~~~~-d------~~~~~~-~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~----l~~~ 800 (871)
.++..+...+.....+.++ | +|+.+. ..+-+-...++++.++...+.+ .+.-..|+..+++. +...
T Consensus 578 ~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~--~e~~~~~l~~ll~pl~~~l~~~ 655 (980)
T 3ibv_A 578 SSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLT--PEEQALYCDSLINALIGKANAA 655 (980)
T ss_dssp HHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988887754321111 1 111000 0112335788899999876532 22233455555544 4444
Q ss_pred hcCCCC--CHHH-HHHHHHHHHHHHhHhccccc---c---cccchHHHHHHHHHHHc--CCChhhHHHHHHHHHHHHHHh
Q 039062 801 YMEKDM--DELV-MKTAIGLLGDLADTLGSNAG---S---LIQQSLTSKDFLNECLS--SKDHMIKESAEWARLAINKAI 869 (871)
Q Consensus 801 ~~~~~~--~~~~-r~~a~~~l~~i~~~~~~~~~---~---~l~~~~~v~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 869 (871)
+..... ++.. ....+.++|.+++.+.+.-. | .+.+ +.+.+..+.+ ..+..+|+.+..++.+|=..+
T Consensus 656 l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~---~~~~il~~l~~~~~~~~irea~~~~~~r~i~~l 732 (980)
T 3ibv_A 656 LSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNK---ASDEIFLILDRMGFNEDIRGAVRFTSGRIINVV 732 (980)
T ss_dssp HTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHH---HHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTT
T ss_pred HhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHH---HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHc
Confidence 433211 2211 22457778888887754211 1 1112 1222222232 367899999999998876555
Q ss_pred c
Q 039062 870 S 870 (871)
Q Consensus 870 ~ 870 (871)
|
T Consensus 733 g 733 (980)
T 3ibv_A 733 G 733 (980)
T ss_dssp H
T ss_pred c
Confidence 4
No 42
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.61 E-value=1.8e-12 Score=148.04 Aligned_cols=467 Identities=13% Similarity=0.089 Sum_probs=302.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHh
Q 039062 8 VLLNAQSIDGTVRKHAEESLKQFQEQNL--------PSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELV 79 (871)
Q Consensus 8 ~l~~~~s~~~~~r~~A~~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~ 79 (871)
++.-+.++++.+|..|-..|..+...+. ++.+..|...+.+ +.+..+|..|+..|+++.... . ..
T Consensus 19 Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~-~~~~~~~~~A~~~L~~Ls~~~-~-~~---- 91 (644)
T 2z6h_A 19 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHHR-E-GL---- 91 (644)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTTSH-H-HH----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCh-h-hH----
Confidence 3444557899999999999988876532 3678888888886 457899999999998754321 1 00
Q ss_pred hhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCC-C--chHHHHHHHHhhcCCChHHHHHHHHHHH
Q 039062 80 QRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQK-Q--WPELIVSLLSNVHQLPAHVKQATLETLG 156 (871)
Q Consensus 80 ~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~-~--~~~ll~~L~~~l~~~~~~~r~~al~~l~ 156 (871)
... ......+.|++.|.++++.++..++.++..++...-+.. . -...++.|+..+.+++...+..++.+|.
T Consensus 92 ~~i------~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~ 165 (644)
T 2z6h_A 92 LAI------FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 165 (644)
T ss_dssp HHH------HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred HHH------HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHH
Confidence 000 112355678889999999999999999999987641100 1 1467899999999988888888888998
Q ss_pred HHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHH
Q 039062 157 YLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIR 236 (871)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 236 (871)
.++... ++.-..-.-...++.++..+.+ .....++..++.++.++...... - ........++.+...+.+++..++
T Consensus 166 ~La~~~-~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~~a~~~L~nLs~~~~~-~-~~l~~~g~l~~L~~ll~~~~~~~~ 241 (644)
T 2z6h_A 166 ILAYGN-QESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVCSSN-K-PAIVEAGGMQALGLHLTDPSQRLV 241 (644)
T ss_dssp HHHTTC-HHHHHHHHHTTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHTTCTTH-H-HHHHHTTHHHHHHTTTTCSCHHHH
T ss_pred HHHhcC-cHHHHHHHHcCChHHHHHHHHc-CChHHHHHHHHHHHHHHhcCccc-H-HHHHHCCCHHHHHHHHhcCCHHHH
Confidence 887532 1110000112446677777775 34678888999999887642111 0 000112357788888888899999
Q ss_pred HHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHh
Q 039062 237 QAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQ 316 (871)
Q Consensus 237 ~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (871)
..++.+|..++...+.. .....+++.++..+.+.+++++..|+..+..++....+. .....+
T Consensus 242 ~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~---------------~~~v~~- 303 (644)
T 2z6h_A 242 QNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN---------------KMMVCQ- 303 (644)
T ss_dssp HHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH---------------HHHHHH-
T ss_pred HHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH---------------HHHHHH-
Confidence 99999999998654331 223467777777888889999999999988886631110 001111
Q ss_pred hhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCC------c-ccchHHHHHhhhcCC-ChhhHHHHH
Q 039062 317 ALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDD------I-VPLVIPFIEENIAKP-DWRQREAAT 388 (871)
Q Consensus 317 ~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~------~-~~~l~~~l~~~l~~~-~~~~r~~a~ 388 (871)
...++.++..+...++. +.++..|..+|..++...++. + ....++.+.+.+.++ +|.+|..++
T Consensus 304 --~g~v~~Lv~lL~~~~~~-------~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~ 374 (644)
T 2z6h_A 304 --VGGIEALVRTVLRAGDR-------EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 374 (644)
T ss_dssp --TTHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHH
T ss_pred --cCCHHHHHHHHHccCCc-------HHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHH
Confidence 23466666666542211 367888888888886433320 1 124567777777775 489999999
Q ss_pred HHHHHhhcCCChhhhhHHH-HHHHHHHHHHccCCCcHHHHHH----------------------HHHHHHHHhhhhccCC
Q 039062 389 YAFGSILEGPSPDKLLHIV-NVALSFMLSALTKDPNNHVKDT----------------------TAWTLGRIFEFLHGST 445 (871)
Q Consensus 389 ~~l~~l~~~~~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~----------------------a~~~l~~~~~~~~~~~ 445 (871)
.+++.++.+. ......+ ..+++.++..+ .+.++.+|.. ++.+|..++....
T Consensus 375 ~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL-~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~--- 448 (644)
T 2z6h_A 375 GLIRNLALCP--ANHAPLREQGAIPRLVQLL-VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH--- 448 (644)
T ss_dssp HHHHHHTTSG--GGHHHHHHTTHHHHHHHHH-HHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHH---
T ss_pred HHHHHHccCH--HHHHHHHHcCCHHHHHHHH-hccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHH---
Confidence 9999999753 2222222 35677788777 6655555544 4444444443221
Q ss_pred CCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHH--HHHHHHHHhhccCChhhhhH
Q 039062 446 IGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQ--EIVQSLLTVTHREDAGESRL 522 (871)
Q Consensus 446 ~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~--~il~~l~~~l~~~~~~~~~v 522 (871)
....-.-...++.|++.+.+ ++.++..++++|.+++.. . .....+. ..++.|..++.+. ++.+
T Consensus 449 ----~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-~------~~~~~i~~~g~l~~L~~ll~~~---~~~v 514 (644)
T 2z6h_A 449 ----NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-K------EAAEAIEAEGATAPLTELLHSR---NEGV 514 (644)
T ss_dssp ----HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-H------HHHHHHHHTTCHHHHHHHTTCS---CHHH
T ss_pred ----HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-H------HHHHHHHHcCChhHHHHHHcCC---CHHH
Confidence 00000112467888888886 789999999999988642 0 0111111 1245566666665 5689
Q ss_pred HHHHHHHHHHHHHhcC
Q 039062 523 RTAAYETLNEVVRSST 538 (871)
Q Consensus 523 r~~a~~~l~~l~~~~~ 538 (871)
|..|..+|+.+....+
T Consensus 515 r~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 515 ATYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHhccCc
Confidence 9999999999877654
No 43
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.60 E-value=6.3e-13 Score=148.95 Aligned_cols=468 Identities=13% Similarity=0.089 Sum_probs=291.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHh
Q 039062 8 VLLNAQSIDGTVRKHAEESLKQFQEQN--------LPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELV 79 (871)
Q Consensus 8 ~l~~~~s~~~~~r~~A~~~L~~~~~~~--------~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~ 79 (871)
++.-+.++++.+|..|-..|..+...+ .++.+..|...+.+ +.++.+|..|+..|++...... ..
T Consensus 22 Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~-~~~~~~~~~a~~~L~~ls~~~~------~~ 94 (529)
T 1jdh_A 22 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHHRE------GL 94 (529)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTSHH------HH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCch------hH
Confidence 333445789999999999998775431 14678888888875 3478899999999988543210 00
Q ss_pred hhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCC-C--chHHHHHHHHhhcCCChHHHHHHHHHHH
Q 039062 80 QRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQK-Q--WPELIVSLLSNVHQLPAHVKQATLETLG 156 (871)
Q Consensus 80 ~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~-~--~~~ll~~L~~~l~~~~~~~r~~al~~l~ 156 (871)
.. -......+.|++.|.++++.++..++.++..++...-... . -.+.++.|...+.+++...+..+..+|.
T Consensus 95 ~~------i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~ 168 (529)
T 1jdh_A 95 LA------IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168 (529)
T ss_dssp HH------HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred HH------HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 00 0112355678889999999999999999999987631100 1 1467899999999999889998888998
Q ss_pred HHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHH
Q 039062 157 YLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIR 236 (871)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 236 (871)
.++... ++.-..-.-...++.++..+.+ .....++..+..++.++...... .........++.+...+.+++++++
T Consensus 169 ~la~~~-~~~~~~i~~~~~i~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~g~~~~L~~ll~~~~~~~~ 244 (529)
T 1jdh_A 169 ILAYGN-QESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVCSSN--KPAIVEAGGMQALGLHLTDPSQRLV 244 (529)
T ss_dssp HHHTTC-HHHHHHHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTSTTH--HHHHHHTTHHHHHHTTTTSSCHHHH
T ss_pred HHHhCC-HHHHHHHHHCCCHHHHHHHHHh-CChHHHHHHHHHHHHHHhcCccc--HHHHHHCCCHHHHHHHHhCCChHHH
Confidence 876532 1110000112345666666764 45667788888888887642110 0000112367788888888899999
Q ss_pred HHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHh
Q 039062 237 QAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQ 316 (871)
Q Consensus 237 ~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (871)
..++.++..+....+.. .....+++.+...+.+.+++++..|+..+..++....+. ...+.+
T Consensus 245 ~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~---------------~~~~~~- 306 (529)
T 1jdh_A 245 QNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN---------------KMMVCQ- 306 (529)
T ss_dssp HHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHH---------------HHHHHH-
T ss_pred HHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH---------------HHHHHH-
Confidence 99999999988654332 123456777777888899999999999988886631110 001111
Q ss_pred hhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCC------c-ccchHHHHHhhhcCCC-hhhHHHHH
Q 039062 317 ALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDD------I-VPLVIPFIEENIAKPD-WRQREAAT 388 (871)
Q Consensus 317 ~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~------~-~~~l~~~l~~~l~~~~-~~~r~~a~ 388 (871)
...++.+++.+...+++ +.++..|..+|..++...++. + -...++.+...+.+++ |.+|..++
T Consensus 307 --~~~v~~L~~ll~~~~~~-------~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~ 377 (529)
T 1jdh_A 307 --VGGIEALVRTVLRAGDR-------EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377 (529)
T ss_dssp --TTHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHH
T ss_pred --cCChHHHHHHHHccCCH-------HHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHH
Confidence 13456666666542221 367888888888886533221 1 1134666777777754 89999999
Q ss_pred HHHHHhhcCCChhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHH--Hhhh-------------hccCCCCCCccc
Q 039062 389 YAFGSILEGPSPDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGR--IFEF-------------LHGSTIGTPIIT 452 (871)
Q Consensus 389 ~~l~~l~~~~~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~--~~~~-------------~~~~~~~~~~~~ 452 (871)
.+++.++.+. ....... ..++|.++..+ .++++.+|..++|++++ +... +..-. ..+...
T Consensus 378 ~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~-~~~~~~ 453 (529)
T 1jdh_A 378 GLIRNLALCP--ANHAPLREQGAIPRLVQLL-VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA-RDVHNR 453 (529)
T ss_dssp HHHHHHTTSG--GGHHHHHHTTHHHHHHHHH-HHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHT-TSHHHH
T ss_pred HHHHHHhcCh--hhhHHHHHcCCHHHHHHHH-HHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHh-cCchHH
Confidence 9999999753 3223333 36789999999 88889999888887776 1110 00000 000000
Q ss_pred h-hhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchH--HHHHHHHHHhhccCChhhhhHHHHHHH
Q 039062 453 Q-ANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFF--QEIVQSLLTVTHREDAGESRLRTAAYE 528 (871)
Q Consensus 453 ~-~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~--~~il~~l~~~l~~~~~~~~~vr~~a~~ 528 (871)
. -.-...++.++..+.+ ++.++..++++|.++... ......+ ...++.+..++.+. ++.+|..|..
T Consensus 454 ~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~-------~~~~~~i~~~~~~~~L~~l~~~~---~~~v~~~a~~ 523 (529)
T 1jdh_A 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-------KEAAEAIEAEGATAPLTELLHSR---NEGVATYAAA 523 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-------HHHHHHHHHTTCHHHHHHGGGCS---SHHHHHHHHH
T ss_pred HHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC-------HHHHHHHHHcCChHHHHHHhcCC---CHHHHHHHHH
Confidence 0 0011346788888887 789999999999988531 0001111 12245566666655 5688999998
Q ss_pred HHHHH
Q 039062 529 TLNEV 533 (871)
Q Consensus 529 ~l~~l 533 (871)
++..+
T Consensus 524 aL~~l 528 (529)
T 1jdh_A 524 VLFRM 528 (529)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88765
No 44
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.60 E-value=3.5e-13 Score=150.96 Aligned_cols=499 Identities=10% Similarity=0.024 Sum_probs=299.8
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchh
Q 039062 130 PELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQA 209 (871)
Q Consensus 130 ~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 209 (871)
...++.|...+.++++.+|..|..+|..++... ...-..-.....++.+...+.+ ++++.+|..|+.++.++.....
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~-~~~~~~~~~a~~~L~~ls~~~~- 92 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHHRE- 92 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTSHH-
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCch-
Confidence 346788888888889999999999999988653 1100000123566777777763 4589999999999999654211
Q ss_pred cccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhH-HHHHHHHHHHhhCCChhHHHHHHHHHHHHH
Q 039062 210 NFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYM-QDIYSITAKAVREDEEPVALQAIEFWSSIC 288 (871)
Q Consensus 210 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~ 288 (871)
..........++.+.+.+.+++++++..++.+|..++...+....... ...++.+...+.+++.+++..+...+..++
T Consensus 93 -~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 93 -GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp -HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 000001123677888889999999999999999999876433222221 246777777888888888887777776665
Q ss_pred HHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcC--CCc-c
Q 039062 289 DEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVG--DDI-V 365 (871)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~-~ 365 (871)
....+. ...+.. ...++.++..+... ++ ...+.++..+|..++..-. ..+ -
T Consensus 172 ~~~~~~---------------~~~i~~---~~~i~~L~~ll~~~--~~------~~~~~~a~~~L~~l~~~~~~~~~~~~ 225 (529)
T 1jdh_A 172 YGNQES---------------KLIILA---SGGPQALVNIMRTY--TY------EKLLWTTSRVLKVLSVCSSNKPAIVE 225 (529)
T ss_dssp TTCHHH---------------HHHHHH---TTHHHHHHHHHHHC--CC------HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred hCCHHH---------------HHHHHH---CCCHHHHHHHHHhC--Ch------HHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 321000 001111 13355666655432 11 1344556666666653211 011 1
Q ss_pred cchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCC
Q 039062 366 PLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGST 445 (871)
Q Consensus 366 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~ 445 (871)
...++.+...+.+++...+..++.+++.++.... ... ....++|.++..+ .++++.+|..++++|++++.....
T Consensus 226 ~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~--~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~-- 299 (529)
T 1jdh_A 226 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT-KQE--GMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYK-- 299 (529)
T ss_dssp TTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT-TCS--CCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTTCHH--
T ss_pred CCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCCh-hhH--HHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHH--
Confidence 2456667777788888999999999999998642 211 2357889999999 999999999999999999764320
Q ss_pred CCCCccchhhHHHHHHHHHHhccC---ChHHHHHHHHHHHHHHhhcccCCCCCCCcchH--HHHHHHHHHhhccCChhhh
Q 039062 446 IGTPIITQANCQQIITVLLQSMKD---TPNVAEKACGALYFLAQGYEDVGPSSPLTPFF--QEIVQSLLTVTHREDAGES 520 (871)
Q Consensus 446 ~~~~~~~~~~~~~il~~l~~~l~d---~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~--~~il~~l~~~l~~~~~~~~ 520 (871)
....-.-...++.+++.+.+ ++.++..++.+|.+++.+..+ .+.....+ ...++.+...+.+.+ +.
T Consensus 300 ----~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~---~~~~~~~i~~~~~i~~L~~lL~~~~--~~ 370 (529)
T 1jdh_A 300 ----NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE---AEMAQNAVRLHYGLPVVVKLLHPPS--HW 370 (529)
T ss_dssp ----HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT---HHHHHHHHHHTTCHHHHHHTTSTTC--CH
T ss_pred ----HHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCch---HHHHHHHHHHcCChhHHHHHhcccc--ch
Confidence 00111112367778777763 479999999999999642110 00000000 123566777777654 34
Q ss_pred hHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchh
Q 039062 521 RLRTAAYETLNEVVRSSTDETAPMV-LQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKY 599 (871)
Q Consensus 521 ~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 599 (871)
.++..++.+++.+...... ..... ..++|.+++.+.+. + ..++..+++++++.. +...
T Consensus 371 ~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~---------~----~~v~~~a~~~l~n~~--~~~~----- 429 (529)
T 1jdh_A 371 PLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRA---------H----QDTQRRTSMGGTQQQ--FVEG----- 429 (529)
T ss_dssp HHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHH---------H----HHHC-------------CBTT-----
T ss_pred HHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHH---------h----HHHHHHHhcccCchh--hhcc-----
Confidence 7889999999999864332 12222 35678888777542 1 235556777666521 1111
Q ss_pred hhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh--HhHHHHHHhhhcCCcchhHHHHHHHHHHHHH
Q 039062 600 VFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM--PDFYKYLEMGLQNFEEYQVCAVTVGVVGDIC 677 (871)
Q Consensus 600 ~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~ 677 (871)
. ...+++..++.++..++.... ....+ ...+|.++..+.+.+ .+++..+.++++.+.
T Consensus 430 -~-----------------~~~~i~~~~~~al~~L~~~~~--~~~~l~~~~~v~~l~~ll~~~~-~~v~~~a~~~l~~l~ 488 (529)
T 1jdh_A 430 -V-----------------RMEEIVEGCTGALHILARDVH--NRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELA 488 (529)
T ss_dssp -B-----------------CHHHHHHHHHHHHHHHTTSHH--HHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHT
T ss_pred -c-----------------cHHHHHHHHHHHHHHHhcCch--HHHHHhccCCccHHHHHHcCCc-hHHHHHHHHHHHHHh
Confidence 0 011233445556665553211 11111 246788888887654 589999999998876
Q ss_pred HHhhhcccccH--HHHHHHHHHHccCCCCCCcCCchHHHHHHHH
Q 039062 678 RALEEKILPYC--DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDI 719 (871)
Q Consensus 678 ~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i 719 (871)
.. ......+ ...++.|.+.+.++ +.+++..+..++..+
T Consensus 489 ~~--~~~~~~i~~~~~~~~L~~l~~~~--~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 489 QD--KEAAEAIEAEGATAPLTELLHSR--NEGVATYAAAVLFRM 528 (529)
T ss_dssp TS--HHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHH
T ss_pred cC--HHHHHHHHHcCChHHHHHHhcCC--CHHHHHHHHHHHHhc
Confidence 32 1111111 24456778888777 788999999988775
No 45
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.59 E-value=5.1e-12 Score=141.55 Aligned_cols=489 Identities=11% Similarity=0.066 Sum_probs=301.2
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchH----HHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccc
Q 039062 93 IKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPE----LIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVE 168 (871)
Q Consensus 93 i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~----ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~ 168 (871)
....+++++.+++...|+..--.+..++. ..++ .++.+.+-++++++.+|-.|+++++.+..
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~------~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-------- 140 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVN------SNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS-------- 140 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCC------CCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--------
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHcc------CCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--------
Confidence 34456778888888888776555555542 3355 35677777889999999999999998743
Q ss_pred hhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Q 039062 169 QDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISS 248 (871)
Q Consensus 169 ~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~ 248 (871)
....+.+.+.+.+++.+.|.++.||+.|+-|+..+....++.... +.+++.+.+++.++++.++..|+.++..++.
T Consensus 141 ~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~----~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM----GDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC----CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc----hhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 344677788888888322899999999999999988755443321 2466777788889999999999999999999
Q ss_pred HhHHhhHHhHHHHHHHHHHHhhCC-------------ChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHH
Q 039062 249 TYYEKLAPYMQDIYSITAKAVRED-------------EEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIK 315 (871)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~~~-------------~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (871)
..+..+.++++.+++.+.+.+... ++..+...++++..++..+ .+. ..
T Consensus 217 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~------------------d~~-~~ 277 (621)
T 2vgl_A 217 KNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPE------------------DPA-VR 277 (621)
T ss_dssp HCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCS------------------SHH-HH
T ss_pred hChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCC------------------CHH-HH
Confidence 888777777777776665554321 4566767777666554310 001 11
Q ss_pred hhhhhhHHHHHHHHhcccCCcc-cc-cccccHhHHHHHHHHHHHHHcC-CCcccchHHHHHhhhcCCChhhHHHHHHHHH
Q 039062 316 QALPALVPLLLEILLKQEEDQD-QE-EGAWNIAMAGGTCLGLVARTVG-DDIVPLVIPFIEENIAKPDWRQREAATYAFG 392 (871)
Q Consensus 316 ~~~~~l~~~l~~~l~~~~~d~~-~~-~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~ 392 (871)
..+..+++.+++.+........ .. .....+. .++...+....+ ........+.+...+.+++...|+.++..+.
T Consensus 278 ~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl---~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~ 354 (621)
T 2vgl_A 278 GRLTECLETILNKAQEPPKSKKVQHSNAKNAVL---FEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMC 354 (621)
T ss_dssp HHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCcccccccccchHHHHH---HHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 1112223333322211110000 00 0001222 233333333222 2233445566677778888999999999999
Q ss_pred HhhcCCChhhhhHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-C
Q 039062 393 SILEGPSPDKLLHIVNVALSFMLSALTK-DPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-T 470 (871)
Q Consensus 393 ~l~~~~~~~~~~~~l~~i~~~l~~~l~~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~ 470 (871)
.++... +. ...+....+.++.++ . |+++.||..++..+..++. ...+..++..|...+.+ +
T Consensus 355 ~l~~~~-~~--~~~~~~~~~~i~~~L-~~d~d~~Ir~~aL~lL~~l~~-------------~~Nv~~Iv~eL~~yl~~~d 417 (621)
T 2vgl_A 355 TLASSE-FS--HEAVKTHIETVINAL-KTERDVSVRQRAVDLLYAMCD-------------RSNAQQIVAEMLSYLETAD 417 (621)
T ss_dssp HHTTCT-TT--HHHHHTTHHHHHHHH-TTCCCHHHHHHHHHHHHHHCC-------------HHHHHHHHHHHHHHHHHCC
T ss_pred HHHhcc-Cc--HHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHcC-------------hhhHHHHHHHHHHHHHhcC
Confidence 998764 21 123444566777888 8 9999999999999877753 23567888888888875 6
Q ss_pred hHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 039062 471 PNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVP 550 (871)
Q Consensus 471 ~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~ 550 (871)
..++..++.++..++..+. ....-| +..+++.+.... ..+...+...+..++...+. ..++. +.
T Consensus 418 ~~~~~~~v~~I~~la~k~~-----~~~~~~----v~~Ll~ll~~~~---~~v~~ev~~~l~~ii~~~~~-~~~~~---~~ 481 (621)
T 2vgl_A 418 YSIREEIVLKVAILAEKYA-----VDYTWY----VDTILNLIRIAG---DYVSEEVWYRVIQIVINRDD-VQGYA---AK 481 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----SSTHHH----HHHHHHHHHHHG---GGSCSHHHHHHHHHHGGGCS-CHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHhcC-----CcHHHH----HHHHHHHHHhhc---ccchHHHHHHHHHHHhCChh-HHHHH---HH
Confidence 7888888888988887653 223333 444444443221 12334556666666665543 33332 33
Q ss_pred HHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHH
Q 039062 551 VIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLA 630 (871)
Q Consensus 551 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~ 630 (871)
.+++.+.+. +... .+...++|+++..+..+.... ...| ..++..+...+...+..+|..++.+
T Consensus 482 ~l~~~l~~~--------~~~~---~li~~~~wilGEy~~~~~~~~----~~~p--~~~l~~l~~~~~~~~~~v~~~~Lta 544 (621)
T 2vgl_A 482 TVFEALQAP--------ACHE---NLVKVGGYILGEFGNLIAGDP----RSSP--LIQFNLLHSKFHLCSVPTRALLLST 544 (621)
T ss_dssp HHHHHHTSS--------SCCH---HHHHHHHHHHHHHTHHHHSST----TSCH--HHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHcCc--------cchH---HHHHHHHHHhcchHHHhcccC----CCCH--HHHHHHHHHHhccCCHHHHHHHHHH
Confidence 344444321 1111 233346688777766554320 0111 2445566666666677899999999
Q ss_pred HHHHHHHhhhhhhhhhHhHHHHHHhhhcC--CcchhHHHHHHHHHHHH
Q 039062 631 IGALAYAAGLDFAKYMPDFYKYLEMGLQN--FEEYQVCAVTVGVVGDI 676 (871)
Q Consensus 631 l~~l~~~~~~~~~~~l~~i~~~l~~~l~~--~~~~~v~~~a~~~l~~l 676 (871)
+..+....++ +...+..+++.... ..+.++|..|...+.-+
T Consensus 545 ~~Kl~~~~p~-----~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 545 YIKFVNLFPE-----VKATIQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHHHHHHCGG-----GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHChH-----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 9888765432 22233333333333 55779999999877765
No 46
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.55 E-value=4.9e-09 Score=122.52 Aligned_cols=683 Identities=10% Similarity=0.082 Sum_probs=368.0
Q ss_pred CHHHHHHHHHHHHHHHhh----ChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHH
Q 039062 16 DGTVRKHAEESLKQFQEQ----NLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKT 91 (871)
Q Consensus 16 ~~~~r~~A~~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~ 91 (871)
++.++++.-+.+..+... ++|+++..+.+.+.+ ++..+..+..+|+.....-..... ..++.+-+.
T Consensus 125 ~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~---~~~~~~~~L~IL~~L~EEV~d~~~-------~~l~~~r~~ 194 (1073)
T 3gjx_A 125 EKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT---SESLCQNNMVILKLLSEEVFDFSS-------GQITQVKAK 194 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHTTSHH-------HHBCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHhccc-------ccccHHHHH
Confidence 466776666666554433 678888888887754 245566677777664331000000 012222222
Q ss_pred HHHH-----------HHHHhhcCC-chHHHHHHHHHHHHHHhhhcCCCC--chHHHHHH-HHhhcCCChHHHHHHHHHHH
Q 039062 92 QIKT-----------CLLNTLTST-VADARSTSSQVIAKVAGIELPQKQ--WPELIVSL-LSNVHQLPAHVKQATLETLG 156 (871)
Q Consensus 92 ~i~~-----------~ll~~l~~~-~~~vr~~~a~~l~~i~~~~~~~~~--~~~ll~~L-~~~l~~~~~~~r~~al~~l~ 156 (871)
.+++ .+...|.+. ++.+...+-++++.....- |-+. =+++++.+ +..+ +++..|..|+.||.
T Consensus 195 ~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI-~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~ 271 (1073)
T 3gjx_A 195 HLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWI-PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLT 271 (1073)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS-CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhc-CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHH
Confidence 2222 222333332 3555555555555554321 1000 04577777 4555 35678999999999
Q ss_pred HHhhccCCCccchhhHHHHHHHHH----hhhcC-----------CCCCHHHHHHHHHHHHHhhhcchhcc-cChhhHHH-
Q 039062 157 YLCEEVSPDVVEQDHVNKILTAVV----QGMNA-----------SEMNNDVRLAATRALYNALSFAQANF-SNDMERDY- 219 (871)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~i~~~l~----~~l~~-----------~~~~~~vr~~al~~l~~~~~~~~~~~-~~~~~~~~- 219 (871)
.++..- .+.. ...+..+++.++ ..+.. ++.+.+.-..-..++..+.+...... ......+.
T Consensus 272 eIv~k~-~~~~-~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l 349 (1073)
T 3gjx_A 272 EIAGVS-VSQY-EEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREAL 349 (1073)
T ss_dssp HHHHSC-SGGG-HHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHhcc-ccch-HHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHH
Confidence 988753 2222 233333333322 22211 12222322223333333322111111 00111222
Q ss_pred --HHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHh-------------------------hHHhHHHHHHHHHHHhhCC
Q 039062 220 --IMRVVCEATQSAELKIRQAAFECLVSISSTYYEK-------------------------LAPYMQDIYSITAKAVRED 272 (871)
Q Consensus 220 --i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~-------------------------~~~~~~~l~~~~~~~~~~~ 272 (871)
.++.+..+...+|.++.+.+++.|..+....+.. +.+++..+...++..+..+
T Consensus 350 ~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P 429 (1073)
T 3gjx_A 350 MEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKP 429 (1073)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444566667789999999999998888753311 3444555666665555432
Q ss_pred Ch---------h-HHH-----HHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhh-hhhhHHHHHHHHhcccCCc
Q 039062 273 EE---------P-VAL-----QAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQA-LPALVPLLLEILLKQEEDQ 336 (871)
Q Consensus 273 ~~---------~-~~~-----~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~l~~~~~d~ 336 (871)
++ + +|. ..+.....+-+. -.+.... -......+.+.+...-+.
T Consensus 430 ~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~--------------------L~~lt~l~~~~~~~i~~~~l~~~~~~- 488 (1073)
T 3gjx_A 430 EEVLVVENDQGEVVREFMKDTDSINLYKNMRET--------------------LVYLTHLDYVDTEIIMTKKLQNQVNG- 488 (1073)
T ss_dssp CCEEEEECSSSCEEEEECSSCHHHHHHHHHHHH--------------------HHHHHHHCHHHHHHHHHHHHHHHHTS-
T ss_pred ccccccCcccchHHHHHHhhcchHHHHHHHHHH--------------------HHHHhcCCHHHHHHHHHHHHHHHhcC-
Confidence 21 0 000 000000000000 0000000 011223333333321111
Q ss_pred ccccccccHhHHHHHHHHHHHHHcCC----CcccchHHHHHhhhcCC---Chh--hHHHHHHHHHHhhcCCChhhhhHHH
Q 039062 337 DQEEGAWNIAMAGGTCLGLVARTVGD----DIVPLVIPFIEENIAKP---DWR--QREAATYAFGSILEGPSPDKLLHIV 407 (871)
Q Consensus 337 ~~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~~---~~~--~r~~a~~~l~~l~~~~~~~~~~~~l 407 (871)
++-+|..+.++..+++.++....+ .++|.+++.+......+ +-+ ++...++.+|...+-. ..=.+++
T Consensus 489 --~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl--~~h~~~L 564 (1073)
T 3gjx_A 489 --TEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFL--RAHWKFL 564 (1073)
T ss_dssp --CCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHH--HHCHHHH
T ss_pred --CCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHH--HhCHHHH
Confidence 123488999999999999866542 56788888877655433 223 3333345666655432 1124578
Q ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCC-CCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHH
Q 039062 408 NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIG-TPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLA 485 (871)
Q Consensus 408 ~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~ 485 (871)
..++..++..+ .++++.|+.+|+.++..+++.+....-. .+.....++..++..+.+...+ .++-......+++.++
T Consensus 565 ~~vl~~L~~~m-~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi 643 (1073)
T 3gjx_A 565 KTVVNKLFEFM-HETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMI 643 (1073)
T ss_dssp HHHHHHHHHHT-TCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 88999999999 9999999999999999999988642100 0011235778888777777665 5555556667777777
Q ss_pred hhcccCCCCCCCcchHHHHHHHHHHhhcc--------CCh-hhh---hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 039062 486 QGYEDVGPSSPLTPFFQEIVQSLLTVTHR--------EDA-GES---RLRTAAYETLNEVVRSSTDETAPMVLQLVPVIM 553 (871)
Q Consensus 486 ~~~~~~~~~~~l~~~~~~il~~l~~~l~~--------~~~-~~~---~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~ 553 (871)
...... .....+++.+++......+. .+. .++ +--...+++...++...|..+.+++..+.+.++
T Consensus 644 ~~~p~~---~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l 720 (1073)
T 3gjx_A 644 GAQTDQ---TVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDML 720 (1073)
T ss_dssp TTCCCH---HHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HhCCCc---chHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHH
Confidence 654321 11233444443333322211 100 011 122356777778888889999999999999888
Q ss_pred HHHHHhhhcc-----CCCh-hhH-HHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhh-
Q 039062 554 MELHKTLEGQ-----KLSS-DER-EKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHE- 625 (871)
Q Consensus 554 ~~l~~~~~~~-----~~~~-~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~- 625 (871)
+..+...+.- ..+. ..+ .....+|..=-+.+..+.+.+++.+........++++++..++.-...+.+..|+
T Consensus 721 ~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~ 800 (1073)
T 3gjx_A 721 NVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREP 800 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCT
T ss_pred HHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccH
Confidence 7765432100 0000 000 0001111100112223333444432222334456677888877777766666675
Q ss_pred hHHHHHHHHHHHhhhhhhhhhHhHHHHHHhh----hcC--CcchhHHHHHHHHHHHHHHHhhhcccc----cHHHHHHHH
Q 039062 626 EAMLAIGALAYAAGLDFAKYMPDFYKYLEMG----LQN--FEEYQVCAVTVGVVGDICRALEEKILP----YCDGIMTQL 695 (871)
Q Consensus 626 ~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~----l~~--~~~~~v~~~a~~~l~~l~~~~~~~~~~----~~~~i~~~l 695 (871)
.++.+.+.++..+|..+.+.++.++..+..+ +++ .+.++.|..-+.++..+..++-..+.. .+..++..+
T Consensus 801 evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i 880 (1073)
T 3gjx_A 801 EVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSI 880 (1073)
T ss_dssp HHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHH
Confidence 4688889999999999889888888776433 221 345789999999999999987654433 345678888
Q ss_pred HHHccCCCCCCcCCchHHHHHHHHHHhhccC-------hHHhHHHHHHHHHHHHhh
Q 039062 696 LKDLSSNQLHRSVKPPIFSCFGDIALAIGEN-------FEKYLMYAMPMLQSAADL 744 (871)
Q Consensus 696 ~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~-------~~~~~~~i~~~l~~~l~~ 744 (871)
+-.+++. +.++-..++..+-.+..+.... +..|.-.++.-+...+.+
T Consensus 881 ~wa~kh~--~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td 934 (1073)
T 3gjx_A 881 IWAFKHT--MRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTD 934 (1073)
T ss_dssp HHHHTCS--SHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHcCCC--ChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8888887 6778788888888887765431 123444444444444443
No 47
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.54 E-value=4e-10 Score=126.18 Aligned_cols=460 Identities=13% Similarity=0.072 Sum_probs=283.9
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchh
Q 039062 130 PELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQA 209 (871)
Q Consensus 130 ~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 209 (871)
+.++..+.+++++++...|+.+...+..+.+.. .+..--+++.+.+-++ ++++.+|..|+.+++++..
T Consensus 73 s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~------~e~~~L~iN~l~kDl~--~~n~~ir~lALr~L~~i~~---- 140 (621)
T 2vgl_A 73 DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN------SELIRLINNAIKNDLA--SRNPTFMGLALHCIANVGS---- 140 (621)
T ss_dssp CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC------HHHHHHHHHHHHHHHH--SCCHHHHHHHHHHHHHHCC----
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC------cHHHHHHHHHHHHhcC--CCCHHHHHHHHHHhhccCC----
Confidence 345677778899999999988888888776543 3334445667778888 8999999999999999642
Q ss_pred cccChhhHHHHHHHHHHhh--ccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHH
Q 039062 210 NFSNDMERDYIMRVVCEAT--QSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSI 287 (871)
Q Consensus 210 ~~~~~~~~~~i~~~l~~~l--~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l 287 (871)
.+..+.+.+.+.+++ .+.++.+|+.|+-++..+....|+.+.+ +.+++.+...+.+.++.+...|+..+..+
T Consensus 141 ----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 141 ----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQHLGVVTAATSLITTL 214 (621)
T ss_dssp ----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 234467888888888 8899999999999999999988877662 13344444477888999999999988888
Q ss_pred HHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCC-ccc----ccccccHhHHHHHHHHHHHHHcCC
Q 039062 288 CDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEED-QDQ----EEGAWNIAMAGGTCLGLVARTVGD 362 (871)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d-~~~----~~~~~~~r~~a~~~l~~l~~~~~~ 362 (871)
+... +..+...++.++..+...+...+-. ++- -.+.|-.. ..+..+
T Consensus 215 ~~~~-------------------~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi----~il~ll------ 265 (621)
T 2vgl_A 215 AQKN-------------------PEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSV----KLLRLL------ 265 (621)
T ss_dssp HHHC-------------------HHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHH----HHHHHG------
T ss_pred HHhC-------------------hHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHH----HHHHHH------
Confidence 7642 1223344555555555544331110 000 00123111 111111
Q ss_pred CcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHcc--------CCCcH--HHHHHHHH
Q 039062 363 DIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALT--------KDPNN--HVKDTTAW 432 (871)
Q Consensus 363 ~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~--------~d~~~--~vr~~a~~ 432 (871)
+.+..... ......+.++++.++..+. ++.+. .|...+..
T Consensus 266 -----------------------------~~~~~~~d-~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~ 315 (621)
T 2vgl_A 266 -----------------------------QCYPPPED-PAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAIS 315 (621)
T ss_dssp -----------------------------GGSSSCSS-HHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHH
T ss_pred -----------------------------HHhCCCCC-HHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHH
Confidence 11111000 1122223333443443320 11222 56666666
Q ss_pred HHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHh
Q 039062 433 TLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTV 511 (871)
Q Consensus 433 ~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~ 511 (871)
++-.+. + ........++.|...+.+ ++.+|..+..+|..++... + -.+.+......++.+
T Consensus 316 ~i~~l~---~---------~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~-----~--~~~~~~~~~~~i~~~ 376 (621)
T 2vgl_A 316 LIIHHD---S---------EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSE-----F--SHEAVKTHIETVINA 376 (621)
T ss_dssp HHHHHC---C---------CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCT-----T--THHHHHTTHHHHHHH
T ss_pred HHHhcC---C---------cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcc-----C--cHHHHHHHHHHHHHH
Confidence 655442 1 234566778888888864 7899999999998886421 1 123445555666677
Q ss_pred hc-cCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 039062 512 TH-REDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQK 590 (871)
Q Consensus 512 l~-~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 590 (871)
+. ++ +..+|..+++.+..++.. .-+..++..+.+.+.+. | . +++..++.+++.++..
T Consensus 377 L~~d~---d~~Ir~~aL~lL~~l~~~------~Nv~~Iv~eL~~yl~~~--------d-~----~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 377 LKTER---DVSVRQRAVDLLYAMCDR------SNAQQIVAEMLSYLETA--------D-Y----SIREEIVLKVAILAEK 434 (621)
T ss_dssp HTTCC---CHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHC--------C-H----HHHHHHHHHHHHHHHH
T ss_pred hccCC---CHhHHHHHHHHHHHHcCh------hhHHHHHHHHHHHHHhc--------C-H----HHHHHHHHHHHHHHHh
Confidence 76 55 467999999998888754 23455566665555432 1 1 3555677888888887
Q ss_pred hCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcch-hHHHHH
Q 039062 591 LGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEY-QVCAVT 669 (871)
Q Consensus 591 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~-~v~~~a 669 (871)
+.+. ....++.++.++......+...+...+..++...+ .+..| .+..+...+.+.+.. .+...+
T Consensus 435 ~~~~----------~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~-~~~~~---~~~~l~~~l~~~~~~~~li~~~ 500 (621)
T 2vgl_A 435 YAVD----------YTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD-DVQGY---AAKTVFEALQAPACHENLVKVG 500 (621)
T ss_dssp HCSS----------THHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC-SCHHH---HHHHHHHHHTSSSCCHHHHHHH
T ss_pred cCCc----------HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh-hHHHH---HHHHHHHHHcCccchHHHHHHH
Confidence 6654 34556666677766555566677666666654332 23332 344555566554332 455677
Q ss_pred HHHHHHHHHHhhhc--ccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhcc
Q 039062 670 VGVVGDICRALEEK--ILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGE 725 (871)
Q Consensus 670 ~~~l~~l~~~~~~~--~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~ 725 (871)
+|++|..+...... ..| .+++..+.+.+... +..+|..++.++..+....++
T Consensus 501 ~wilGEy~~~~~~~~~~~p--~~~l~~l~~~~~~~--~~~v~~~~Lta~~Kl~~~~p~ 554 (621)
T 2vgl_A 501 GYILGEFGNLIAGDPRSSP--LIQFNLLHSKFHLC--SVPTRALLLSTYIKFVNLFPE 554 (621)
T ss_dssp HHHHHHHTHHHHSSTTSCH--HHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHhcchHHHhcccCCCCH--HHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHChH
Confidence 89999987766532 111 25566677666655 678999999999998776643
No 48
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.4e-13 Score=134.59 Aligned_cols=212 Identities=17% Similarity=0.254 Sum_probs=167.7
Q ss_pred cccchHHHHHhhhcCCChhhHHHHHHHHHH-hhcCCChhhh--hHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhh
Q 039062 364 IVPLVIPFIEENIAKPDWRQREAATYAFGS-ILEGPSPDKL--LHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEF 440 (871)
Q Consensus 364 ~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~-l~~~~~~~~~--~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~ 440 (871)
+++.+-+-+.+.+.+.+|+.|.+|+..++. +.+++ ++.. ...+..++..+.+.+.+|+|+.||..|+.+++.++..
T Consensus 13 i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~-~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~ 91 (249)
T 2qk1_A 13 ILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQT-KKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDK 91 (249)
T ss_dssp CGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGC-CCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcC-CccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 444444455667789999999999999999 98764 2332 2233466777777773599999999999999999988
Q ss_pred hc-cCCCCCCccch-hhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCCh
Q 039062 441 LH-GSTIGTPIITQ-ANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDA 517 (871)
Q Consensus 441 ~~-~~~~~~~~~~~-~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~ 517 (871)
+. . . .. .|+..++|.++..+.| .+.|+.++..++..+++.+. +....+|++.+++.++..+++.+
T Consensus 92 l~~~------~-f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~----~~~~~~~l~~ll~~l~~~l~~k~- 159 (249)
T 2qk1_A 92 LKTP------G-FSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD----PLASSGRNEDMLKDILEHMKHKT- 159 (249)
T ss_dssp HCTT------T-SCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC----TTCTTCTTHHHHHHHHHHTTCSS-
T ss_pred cccc------c-ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc----ccccCCcHHHHHHHHHHHHcCCC-
Confidence 85 3 2 34 7999999999999998 68999999999999998753 22333458999999999998774
Q ss_pred hhhhHHHHHHHHHHHHHHhcCC---CcHHHH-HHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCC
Q 039062 518 GESRLRTAAYETLNEVVRSSTD---ETAPMV-LQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGS 593 (871)
Q Consensus 518 ~~~~vr~~a~~~l~~l~~~~~~---~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 593 (871)
+.+|..++.+|+.++...+. .+.+++ +.++|.+.+.+.+. + +.+|..+..|++.++..+|.
T Consensus 160 --~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~---------~----~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 160 --PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT---------Q----PAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp --HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS---------S----HHHHHHHHHHHHHHHHHHCS
T ss_pred --hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC---------C----HHHHHHHHHHHHHHHHHhCH
Confidence 58999999999999999884 477899 99999999998553 1 25888999999999999997
Q ss_pred CCCchhhhhhhHHHH
Q 039062 594 SEPTKYVFMQYADQI 608 (871)
Q Consensus 594 ~~~~~~~~~~~~~~i 608 (871)
.. +.++++.+
T Consensus 225 ~~-----~~p~l~~L 234 (249)
T 2qk1_A 225 NT-----FVKTLEHL 234 (249)
T ss_dssp GG-----GHHHHHHS
T ss_pred HH-----HHHHHHHH
Confidence 63 66666543
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.52 E-value=7.3e-13 Score=147.03 Aligned_cols=406 Identities=16% Similarity=0.151 Sum_probs=261.5
Q ss_pred hHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCC
Q 039062 368 VIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTI 446 (871)
Q Consensus 368 l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~ 446 (871)
.++.+.+.+.+++...+..|+..+..+...-....+...+ ..++|.++..+..++++.++..|+|+|+.++.....
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~--- 153 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE--- 153 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH---
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH---
Confidence 3555666778888889999998888776432112223333 468899999982356799999999999999875431
Q ss_pred CCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchH--HHHHHHHHHhhccCChh--hhh
Q 039062 447 GTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFF--QEIVQSLLTVTHREDAG--ESR 521 (871)
Q Consensus 447 ~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~--~~il~~l~~~l~~~~~~--~~~ 521 (871)
....-.-...+|.|+..+.+ ++.+++.|+++|.+++..-. .....+ ...++.++..+...+.. ...
T Consensus 154 ---~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~------~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~ 224 (529)
T 3tpo_A 154 ---QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGS------AFRDLVIKHGAIDPLLALLAVPDLSTLACG 224 (529)
T ss_dssp ---HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH------HHHHHHHHTTCHHHHHHTTCSSCGGGSCHH
T ss_pred ---HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCH------HHHHHHHHcCCcHHHHHHHhccchhHhHHH
Confidence 00111222478999998886 78999999999999974211 111111 12355667777655421 123
Q ss_pred HHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhh
Q 039062 522 LRTAAYETLNEVVRSST-DETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYV 600 (871)
Q Consensus 522 vr~~a~~~l~~l~~~~~-~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 600 (871)
+...+..++..+..... .........++|.+...+... +. +++..+++++..++..-. +.
T Consensus 225 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---------~~----~v~~~a~~aL~~l~~~~~------~~ 285 (529)
T 3tpo_A 225 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---------DP----EVLADSCWAISYLTDGPN------ER 285 (529)
T ss_dssp HHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS---------CH----HHHHHHHHHHHHHHSSCH------HH
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC---------cH----HHHHHHHHHHHHhhhhhh------hh
Confidence 45577888888877554 334556678889888877542 11 356678888888764211 00
Q ss_pred hhhh-HHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh-HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHH
Q 039062 601 FMQY-ADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM-PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICR 678 (871)
Q Consensus 601 ~~~~-~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 678 (871)
.... ...+++.++.++.+++..++..++.+++.++..........+ ..+++.+...+.+. +..++..|+++|++++.
T Consensus 286 ~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~ 364 (529)
T 3tpo_A 286 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITA 364 (529)
T ss_dssp HHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhc
Confidence 1111 135678889999998889999999999999754433222222 34677777777755 45899999999999976
Q ss_pred HhhhcccccH-HHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHH--HHHHHHHHHHhhcccCCCCChhH
Q 039062 679 ALEEKILPYC-DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLM--YAMPMLQSAADLSAHTANVDDDM 755 (871)
Q Consensus 679 ~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~~d~~~ 755 (871)
.......... ..+++.++..+.+. +..++..|+++++.++.........++- .+++.|.+.+... |
T Consensus 365 ~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~------d--- 433 (529)
T 3tpo_A 365 GRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK------D--- 433 (529)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS------C---
T ss_pred ccHHHHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC------C---
Confidence 4332222111 36788889988887 6789999999999998765443333322 3577777777654 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCccccccccchHH--HHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 039062 756 TEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPH--ILQFLDSMYMEKDMDELVMKTAIGLLGDLA 822 (871)
Q Consensus 756 ~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~ 822 (871)
..++..++.++..+++........+.+..+++. .+..|..+..+ .++++++.|+..|....
T Consensus 434 ----~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~--~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 434 ----TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH--ENESVYKASLNLIEKYF 496 (529)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGC--SSHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcC--CCHHHHHHHHHHHHHHC
Confidence 346677888888887653222111222222222 23444444433 57889999988886653
No 50
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.48 E-value=1.9e-12 Score=143.77 Aligned_cols=363 Identities=11% Similarity=0.141 Sum_probs=234.2
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchh
Q 039062 130 PELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQA 209 (871)
Q Consensus 130 ~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 209 (871)
...++.+++.+.++++..+..|+..+.++...-....+..-.-.+++|.+++.+.. +.++.++..|..+|.++....+.
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~-~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHcCCHH
Confidence 44578889999999999999999999887644311122112235678889999875 56799999999999998754322
Q ss_pred cccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhCCChh-----HHHHHHHH
Q 039062 210 NFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQ-DIYSITAKAVREDEEP-----VALQAIEF 283 (871)
Q Consensus 210 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~-----~~~~a~~~ 283 (871)
... .......++.+..++.+++++++..|+.+|..++...+..-...+. ..++.++..+...+.. ....+...
T Consensus 154 ~~~-~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 232 (529)
T 3tpo_A 154 QTK-AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 232 (529)
T ss_dssp HHH-HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHH
T ss_pred HHH-HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHH
Confidence 100 0011236788889999999999999999999998654332221111 3455555566554432 33344444
Q ss_pred HHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCC
Q 039062 284 WSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDD 363 (871)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 363 (871)
+..++... ... .. ......++|.|...+.. ++ -.++..|..+|..++......
T Consensus 233 L~nl~~~~--------------~~~--~~--~~~~~~~lp~L~~LL~~--~~-------~~v~~~a~~aL~~l~~~~~~~ 285 (529)
T 3tpo_A 233 LSNLCRNK--------------NPA--PP--LDAVEQILPTLVRLLHH--ND-------PEVLADSCWAISYLTDGPNER 285 (529)
T ss_dssp HHHHHCCC--------------TTC--CC--HHHHHHHHHHHHHHTTS--SC-------HHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHhcc--------------cch--hh--HHHHhhHHHHHHHHhcC--Cc-------HHHHHHHHHHHHHhhhhhhhh
Confidence 44444321 000 01 11223456777666643 22 146777788888776532110
Q ss_pred ----cccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHh
Q 039062 364 ----IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIF 438 (871)
Q Consensus 364 ----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~ 438 (871)
.-..+++.+.+.+.++++.++..++.+++.++.+. .......+ ...++.+...+ .++++.+|..|+|+|++++
T Consensus 286 ~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL-~~~~~~i~~~a~~aL~nl~ 363 (529)
T 3tpo_A 286 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNIT 363 (529)
T ss_dssp HHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGGHHHHT-TCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccc-hHHHHHHhhcccHHHHHHHH-cCCCHHHHHHHHHHHHHHh
Confidence 11345666777788899999999999999998864 22222222 35678889999 9999999999999999998
Q ss_pred hhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchH--HHHHHHHHHhhccC
Q 039062 439 EFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFF--QEIVQSLLTVTHRE 515 (871)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~--~~il~~l~~~l~~~ 515 (871)
..... ......-..++|.++..+.+ ++.++..|+++|.+++.+... +.+ .++ ..+++.|+.++...
T Consensus 364 ~~~~~------~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~----~~~-~~l~~~g~i~~L~~LL~~~ 432 (529)
T 3tpo_A 364 AGRQD------QIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV----EQI-VYLVHCGIIEPLMNLLSAK 432 (529)
T ss_dssp TSCHH------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH----HHH-HHHHHTTCHHHHHHGGGCS
T ss_pred cccHH------HHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCH----HHH-HHHHHCcCHHHHHHHhcCC
Confidence 75431 01111122478888888886 789999999999999864211 111 111 13466778888776
Q ss_pred ChhhhhHHHHHHHHHHHHHHhc
Q 039062 516 DAGESRLRTAAYETLNEVVRSS 537 (871)
Q Consensus 516 ~~~~~~vr~~a~~~l~~l~~~~ 537 (871)
+..++..++.+|..+....
T Consensus 433 ---d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 433 ---DTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp ---CHHHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHHHh
Confidence 4578888888888887643
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.46 E-value=5.8e-12 Score=138.83 Aligned_cols=405 Identities=13% Similarity=0.118 Sum_probs=251.8
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhc-cCcHHHHHHHHHHHHHHHHHhHHhh
Q 039062 176 LTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQ-SAELKIRQAAFECLVSISSTYYEKL 254 (871)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~ 254 (871)
++.+++.++ ..+.+.+..|...+..+++..............+++.+.+++. +++++++..|+.+|..++...++.-
T Consensus 59 i~~~v~~l~--s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 59 VEDIVKGIN--SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp HHHHHHHHT--SSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 344556777 6888999999999988875432211111112346888889886 4468999999999999987555443
Q ss_pred HHhHH-HHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhccc
Q 039062 255 APYMQ-DIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQE 333 (871)
Q Consensus 255 ~~~~~-~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 333 (871)
...++ ..++.++..+.+++.+++..|+.++..++...... ...+. -...++.++..+...+
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~----------------r~~v~--~~G~i~~Ll~lL~~~~ 198 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF----------------RDLVI--KHGAIDPLLALLAVPD 198 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH----------------HHHHH--HTTCHHHHHHHTCSSC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH----------------HHHHH--HcCChHHHHHHHHhcc
Confidence 33333 46777888899999999999999999887532110 11111 1234566666654321
Q ss_pred CCcccccccccHhHHHHHHHHHHHHHcC-CC---cccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH-H
Q 039062 334 EDQDQEEGAWNIAMAGGTCLGLVARTVG-DD---IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV-N 408 (871)
Q Consensus 334 ~d~~~~~~~~~~r~~a~~~l~~l~~~~~-~~---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l-~ 408 (871)
.+ .......+.+..++..++.... .. ....++|.+...+.+++..++..++.+++.++.+. .+...... .
T Consensus 199 ~~----~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~ 273 (510)
T 3ul1_B 199 LS----TLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP-NERIEMVVKK 273 (510)
T ss_dssp GG----GSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHHHHTT
T ss_pred ch----hhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhch-hhhHHHHHhc
Confidence 11 1112334445666666655331 11 12456788888889999999999999999999875 23322222 3
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhh
Q 039062 409 VALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQG 487 (871)
Q Consensus 409 ~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~ 487 (871)
.+++.++..+ .++++.++..++++++.++..... ....-.-...++.|...+.+ ++.++..|+++|.+++.+
T Consensus 274 g~i~~Lv~lL-~~~~~~v~~~al~aL~nl~~~~~~------~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~ 346 (510)
T 3ul1_B 274 GVVPQLVKLL-GATELPIVTPALRAIGNIVTGTDE------QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 346 (510)
T ss_dssp TCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCHH------HHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTS
T ss_pred ccchhhhhhh-cCCChhhhhHHHHHHHHhhcCCHH------HHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 5788999999 999999999999999998764321 00000112345666666665 678999999999999753
Q ss_pred cccCCCCCCCcchH-HHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHHHHHhhhccC
Q 039062 488 YEDVGPSSPLTPFF-QEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMV--LQLVPVIMMELHKTLEGQK 564 (871)
Q Consensus 488 ~~~~~~~~~l~~~~-~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~ 564 (871)
-.. ...... ..+++.++..+.+. +..+|..|..+|+.++.........++ ...++.+++.+...
T Consensus 347 ~~~-----~~~~v~~~g~i~~Lv~lL~~~---~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~----- 413 (510)
T 3ul1_B 347 RQD-----QIQQVVNHGLVPFLVGVLSKA---DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK----- 413 (510)
T ss_dssp CHH-----HHHHHHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS-----
T ss_pred cHH-----HHHHHHhcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-----
Confidence 211 111111 24567777777766 458899999999999886553322222 35677777776432
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHH--HHHHHHHHHHcccCcchhhhHHHHHHHH
Q 039062 565 LSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYAD--QIMGLFLRVFACRSATVHEEAMLAIGAL 634 (871)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~~~a~~~l~~l 634 (871)
|+ +++..+++++..+.+...... ..+.+...+. ..++.+-.+..+.+.++++.|...|...
T Consensus 414 ----d~----~i~~~~L~aL~nil~~~~~~~-~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 414 ----DT----KIIQVILDAISNIFQAAEKLG-ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp ----CH----HHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ----CH----HHHHHHHHHHHHHHHHhHhcc-chHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 22 356668888888876543221 1111222222 2244554544555666777777666544
No 52
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.46 E-value=6.2e-11 Score=130.61 Aligned_cols=384 Identities=14% Similarity=0.129 Sum_probs=261.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhh--ChH-------HHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhH
Q 039062 5 VTQVLLNAQSIDGTVRKHAEESLKQFQEQ--NLP-------SFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRK 75 (871)
Q Consensus 5 l~~~l~~~~s~~~~~r~~A~~~L~~~~~~--~~~-------~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~ 75 (871)
+.++++++.|.|.+.+.+|.+.+.++.+. +|| |.++.|.+.|.+ +.++.++.-|+..|.|....
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~-~~~~~lq~~Aa~aL~nias~------ 131 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASG------ 131 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHTS------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC-CCCHHHHHHHHHHHHHHhcC------
Confidence 67889999999999999999999887543 443 567788888876 45688999999999886542
Q ss_pred HHHhhhccCCCHHHHH-----HHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCC--C--CchHHHHHHHHhhcCCCh-
Q 039062 76 FELVQRWLSLDANVKT-----QIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQ--K--QWPELIVSLLSNVHQLPA- 145 (871)
Q Consensus 76 ~~~~~~~~~~~~~~~~-----~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~--~--~~~~ll~~L~~~l~~~~~- 145 (871)
+++.+. ...+.|+++|.+++..+|..++.+|+.++... +. . .-...++.|...+.+++.
T Consensus 132 ----------~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~-~~~r~~v~~~G~i~~Ll~lL~~~~~~ 200 (510)
T 3ul1_B 132 ----------TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG-SAFRDLVIKHGAIDPLLALLAVPDLS 200 (510)
T ss_dssp ----------CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHHTCSSCGG
T ss_pred ----------CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHcCChHHHHHHHHhccch
Confidence 222222 34567889999999999999999999998542 10 0 012346667777766542
Q ss_pred ----HHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHH
Q 039062 146 ----HVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIM 221 (871)
Q Consensus 146 ----~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~ 221 (871)
.....+..++..++... ...........+++.+...+. +++.+++..|+.++..+......... ......++
T Consensus 201 ~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~lp~L~~LL~--~~~~~v~~~A~~aL~~L~~~~~~~~~-~i~~~g~i 276 (510)
T 3ul1_B 201 TLACGYLRNLTWTLSNLCRNK-NPAPPLDAVEQILPTLVRLLH--HNDPEVLADSCWAISYLTDGPNERIE-MVVKKGVV 276 (510)
T ss_dssp GSCHHHHHHHHHHHHHHHCCC-SSCCCHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTSSCHHHHH-HHHTTTCH
T ss_pred hhhHHHHHHHHHHHHHHhhcc-cchhHHHHHHhHHHHHHHHHh--cCCHHHHHHHHHHHHHHhhchhhhHH-HHHhcccc
Confidence 34567788888887754 222213455778889999998 78999999999999998653221100 00012356
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcC
Q 039062 222 RVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQ-DIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGS 300 (871)
Q Consensus 222 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~ 300 (871)
+.+.+++.+++..++..++.++..++..........+. ..++.+...+.+++++++..|+..+..++....
T Consensus 277 ~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~-------- 348 (510)
T 3ul1_B 277 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ-------- 348 (510)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCH--------
T ss_pred hhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcH--------
Confidence 77888889999999999999999987543332222222 344555556778889999999998888865311
Q ss_pred CCCCCCCCchhhhHHhhh-hhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcc-----cchHHHHHh
Q 039062 301 DFTGNSDIPCFYFIKQAL-PALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIV-----PLVIPFIEE 374 (871)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~-----~~l~~~l~~ 374 (871)
....... ..++|.++..+... + +.+++.|..+|..++.....+.. ...++.+..
T Consensus 349 -----------~~~~~v~~~g~i~~Lv~lL~~~--~-------~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~ 408 (510)
T 3ul1_B 349 -----------DQIQQVVNHGLVPFLVGVLSKA--D-------FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 408 (510)
T ss_dssp -----------HHHHHHHHTTHHHHHHHHHHSS--C-------HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHH
T ss_pred -----------HHHHHHHhcCCHHHHHHHHcCC--C-------HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHH
Confidence 1111111 24677777777532 1 46888899999888765332111 234566777
Q ss_pred hhcCCChhhHHHHHHHHHHhhcC---CC-hhhhhHHHH--HHHHHHHHHccCCCcHHHHHHHHHHHHHHhh
Q 039062 375 NIAKPDWRQREAATYAFGSILEG---PS-PDKLLHIVN--VALSFMLSALTKDPNNHVKDTTAWTLGRIFE 439 (871)
Q Consensus 375 ~l~~~~~~~r~~a~~~l~~l~~~---~~-~~~~~~~l~--~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~ 439 (871)
.+.+++++.+..++.++..+... .+ .+.+...+. ..+..+-... .+++..|+..|...|.++..
T Consensus 409 LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq-~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 409 LLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ-RHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHCC
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHCC
Confidence 88889999999999999888652 11 122222232 3456666666 88999999999999888764
No 53
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=1.3e-12 Score=128.70 Aligned_cols=199 Identities=13% Similarity=0.098 Sum_probs=166.3
Q ss_pred HHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhc-CCcchhHHHHHHHHHHHHHHHhhhcccccH
Q 039062 610 GLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQ-NFEEYQVCAVTVGVVGDICRALEEKILPYC 688 (871)
Q Consensus 610 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 688 (871)
+.+.+.+++.++..|..++..+..++...+......+..+++.+...+. +. +..++..|+.+++.++..++..+.+|.
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3466778888999999999999999987543333456788999988885 55 568999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHH
Q 039062 689 DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILE 768 (871)
Q Consensus 689 ~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~ 768 (871)
..+++.+++.+.+. +..+|..+..++..++...+ ++.++|.+...+... ...+|..++.
T Consensus 97 ~~ilp~ll~~l~d~--~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~-------------~~~vr~~~l~ 155 (242)
T 2qk2_A 97 SACVPSLLEKFKEK--KPNVVTALREAIDAIYASTS------LEAQQESIVESLSNK-------------NPSVKSETAL 155 (242)
T ss_dssp HHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCS-------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCC-------------ChHHHHHHHH
Confidence 99999999999987 67899999999999988654 467888888877654 2679999999
Q ss_pred HHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhccc-ccccccc
Q 039062 769 AYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSN-AGSLIQQ 835 (871)
Q Consensus 769 ~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~-~~~~l~~ 835 (871)
.+..++...+. ...+.+|++.+++.+..++.| .+.++|..|..+++.++..+|++ +.||+++
T Consensus 156 ~l~~~l~~~~~---~~~~~~~l~~l~p~l~~~l~D--~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~ 218 (242)
T 2qk2_A 156 FIARALTRTQP---TALNKKLLKLLTTSLVKTLNE--PDPTVRDSSAEALGTLIKLMGDKAVTPLLAD 218 (242)
T ss_dssp HHHHHHTTCCG---GGCCHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHHHHHHCHHHHGGGGTT
T ss_pred HHHHHHHHcCC---CCccHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 99998776431 123568899999999999986 57999999999999999999987 7788876
No 54
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=1.3e-12 Score=128.62 Aligned_cols=196 Identities=12% Similarity=0.141 Sum_probs=158.5
Q ss_pred CcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHHhhhh
Q 039062 363 DIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTK-DPNNHVKDTTAWTLGRIFEFL 441 (871)
Q Consensus 363 ~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~-d~~~~vr~~a~~~l~~~~~~~ 441 (871)
.+.+.+.+.+.+.+++.+|+.|++|+..+..+++++. +.....+..+++.+...+ . |+++.||..++.+++.++...
T Consensus 11 di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~-~~~~~~~~~i~~~L~~~l-~kd~~~~V~~~a~~~l~~la~~l 88 (242)
T 2qk2_A 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHP-KLENGEYGALVSALKKVI-TKDSNVVLVAMAGKCLALLAKGL 88 (242)
T ss_dssp CCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCS-SBCCCCCHHHHHHHHHHH-HHCSCHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCC-CCCCCCHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHH
Confidence 3444555556677789999999999999999998742 322233467788888888 7 999999999999999999887
Q ss_pred ccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhh
Q 039062 442 HGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGES 520 (871)
Q Consensus 442 ~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~ 520 (871)
.. ....+...++|.++..+.| ++.||.+++.++..++... .++.+++.+...+.+. ++
T Consensus 89 ~~-------~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-----------~~~~ll~~l~~~l~~~---~~ 147 (242)
T 2qk2_A 89 AK-------RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-----------SLEAQQESIVESLSNK---NP 147 (242)
T ss_dssp GG-------GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-----------CHHHHHHHHHHHTTCS---CH
T ss_pred hh-------hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHcCC---Ch
Confidence 52 3467899999999999998 7899999999999997632 2577888888888766 45
Q ss_pred hHHHHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 039062 521 RLRTAAYETLNEVVRSST-D-ETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSS 594 (871)
Q Consensus 521 ~vr~~a~~~l~~l~~~~~-~-~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 594 (871)
.+|..++..++.++...+ . .+.++++.++|.+...+++.. +++|..+..++..++..+|.+
T Consensus 148 ~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~-------------~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 148 SVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPD-------------PTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSC-------------HHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCC-------------hHHHHHHHHHHHHHHHHcCHH
Confidence 899999999999988875 3 468899999999999985431 257888999999999998854
No 55
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.41 E-value=9.7e-13 Score=128.60 Aligned_cols=205 Identities=13% Similarity=0.073 Sum_probs=166.8
Q ss_pred HHHHHcccCcchhhhHHHHHHH-HHHHhhhhh--hhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh-hccc-c
Q 039062 612 FLRVFACRSATVHEEAMLAIGA-LAYAAGLDF--AKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE-EKIL-P 686 (871)
Q Consensus 612 l~~~l~~~~~~~~~~a~~~l~~-l~~~~~~~~--~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~-~~~~-~ 686 (871)
+...+++.++..|.+++..++. ++...+.-. ...+..++..+.+.+.++.+..++..|+.+++.++..++ ..+. +
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4556678899999999999998 875433222 233457788888888434456899999999999999998 8999 9
Q ss_pred cHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChH-HhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHH
Q 039062 687 YCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFE-KYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNG 765 (871)
Q Consensus 687 ~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~ 765 (871)
|...+++.+++.+.+. ...|+..+..++..++..+++... +|++.+++.+...+... .+.+|+.
T Consensus 101 y~~~llp~ll~~l~dk--k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-------------~~~vk~~ 165 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEK--KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-------------TPQIRME 165 (249)
T ss_dssp HHHHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-------------SHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-------------ChHHHHH
Confidence 9999999999999887 678999999999999998865322 34999999999998764 2689999
Q ss_pred HHHHHHHHhhhccCCccccccccch-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhccc-ccccccc
Q 039062 766 ILEAYSGIFQGFKNSPKTQLLIPYA-PHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSN-AGSLIQQ 835 (871)
Q Consensus 766 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~-~~~~l~~ 835 (871)
++.++..++...+.. +..+.+|+ +.+++.+...+.| .+.++|..|+.+++.+++.+|+. +.||++.
T Consensus 166 al~~l~~~~~~~~~~--~~~l~~~l~~~iip~l~~~l~D--~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 166 CTQLFNASMKEEKDG--YSTLQRYLKDEVVPIVIQIVND--TQPAIRTIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp HHHHHHHHHHHCCSC--SHHHHHHHTTTHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCc--chhHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999999999875321 24577899 9999999999986 58999999999999999999985 7677664
No 56
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.24 E-value=1.6e-07 Score=103.44 Aligned_cols=580 Identities=12% Similarity=0.091 Sum_probs=320.8
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchh
Q 039062 130 PELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQA 209 (871)
Q Consensus 130 ~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 209 (871)
..++..|...+..+.......-+.++..+...+ .-.+ ..+.-++..+... ....+||.-++-++..+....+.
T Consensus 131 ~~ll~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~--~~~~~l~~~~~~~----~~~~~~~~~~l~i~~~~~~~~~~ 203 (778)
T 3opb_A 131 IALLNELQIRIHYGEDTHVTYLLSIILQLLNKF-KYNF--KEVRFLVKELILR----ISEDEVKSMMLIIFAELQSSFQK 203 (778)
T ss_dssp HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS-CCCS--TTTTHHHHHHHTT----TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHc-Cccc--cchhhHHHHhccc----cChhhhHHHHHHHHHHHHHhCch
Confidence 456666666665332224556677777777766 3223 1244444433332 56789999999999887765443
Q ss_pred cccChhhHHHHHH-HHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhH--HHHHHHHHHHhh-CCChhHHHHHHHHHH
Q 039062 210 NFSNDMERDYIMR-VVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYM--QDIYSITAKAVR-EDEEPVALQAIEFWS 285 (871)
Q Consensus 210 ~~~~~~~~~~i~~-~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~l~~~~~~~~~-~~~~~~~~~a~~~~~ 285 (871)
.+. .....++. .+++.-.+.+.+-...++..+..+.-..|+.-...+ +.+.+.+...+. ..+..+...+++.+.
T Consensus 204 ~~~--~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLs 281 (778)
T 3opb_A 204 DFD--KAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLS 281 (778)
T ss_dssp HHH--HHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 221 11122333 222221221122245566666665554444433322 134555555553 355667777888888
Q ss_pred HHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcC--CC
Q 039062 286 SICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVG--DD 363 (871)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~--~~ 363 (871)
..|..+. |+.++.. ..++.|...+.. + .+|..|.-+|..+....+ ..
T Consensus 282 aACi~~~-----------------cR~~I~~---~~~~~L~~~l~~---~--------~ir~lAavvL~KL~~~~~~~~~ 330 (778)
T 3opb_A 282 SACIDET-----------------MRTYITE---NYLQLLERSLNV---E--------DVQIYSALVLVKTWSFTKLTCI 330 (778)
T ss_dssp HHCCSHH-----------------HHHHHHH---HHHHHHHHHTTS---G--------GGHHHHHHHHHHHTGGGTCTTC
T ss_pred HHhCCcH-----------------HHHHHHH---hHHHHHHHHhcc---H--------HHHHHHHHHHHHHhcCCCCCcC
Confidence 8776531 3344433 234444444321 1 456666677766665442 22
Q ss_pred cccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH---HHHHHHHHHHccCC-CcHHHHHHHHHHHHHHhh
Q 039062 364 IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV---NVALSFMLSALTKD-PNNHVKDTTAWTLGRIFE 439 (871)
Q Consensus 364 ~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l---~~i~~~l~~~l~~d-~~~~vr~~a~~~l~~~~~ 439 (871)
-+..+.+.+..++.+++-..|+-|+..|..++-.. .+++.+ +..++.++..+ ++ .+..+.+.++.+++++..
T Consensus 331 si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~---~VKe~L~~d~~~L~~Lv~ll-k~~~d~s~~Ygal~IL~NLt~ 406 (778)
T 3opb_A 331 NLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKA---SVKIMIRSNESFTEILLTMI-KSQKMTHCLYGLLVIMANLST 406 (778)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSS---HHHHHHHHCHHHHHHHHHHH-TTTCCTTHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCH---HHHHHHHhCHHHHHHHHHHH-hCCCCchHHHHHHHHHHHhcC
Confidence 34467777888888766666888899999987743 233333 56788888888 74 566789999999999998
Q ss_pred hhccCCCCCCccchhhHHHHHHHHHHh-c----cCCh-----HHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHH
Q 039062 440 FLHGSTIGTPIITQANCQQIITVLLQS-M----KDTP-----NVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLL 509 (871)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~il~~l~~~-l----~d~~-----~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~ 509 (871)
..+... ....-+..+-+..-.. - .+.+ .+....+.. +-+ ..+++.|.
T Consensus 407 ~~~~~~-----~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~-------l~e-----------aGvIp~Lv 463 (778)
T 3opb_A 407 LPEEXX-----XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY-------ILR-----------TELISFLK 463 (778)
T ss_dssp CCCCCC-----CCCC------------------CCTHHHHHHHHHHHHHHH-------TTT-----------TTHHHHHH
T ss_pred CCcccc-----hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHH-------HHH-----------CcCHHHHH
Confidence 765321 1011111111111000 0 0111 111111111 111 02455666
Q ss_pred HhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHH
Q 039062 510 TVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMV-LQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVII 588 (871)
Q Consensus 510 ~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 588 (871)
..+.+. ++.+|+.+..+|..+...... -...+ ...++.+++.+.... +.. ...+..+..+|..+.
T Consensus 464 ~Ll~S~---s~~~re~A~~aL~nLS~d~~~-R~~lvqqGal~~LL~lL~s~~--------~~~--~~~k~~AA~ALArLl 529 (778)
T 3opb_A 464 REMHNL---SPNCKQQVVRIIYNITRSKNF-IPQLAQQGAVKIILEYLANKQ--------DIG--EPIRILGCRALTRML 529 (778)
T ss_dssp HHGGGS---CHHHHHHHHHHHHHHHTSGGG-HHHHHHTTHHHHHHHHTTCC-----------C--CHHHHHHHHHHHHHH
T ss_pred HHHcCC---CHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHHHHHhcCC--------Ccc--hHHHHHHHHHHHHHH
Confidence 666665 457899999999999755322 11222 466778887775431 100 024455777777776
Q ss_pred HHhCCCCCchhhhhhh-HHHHHHHHHHHHcc-cCcc------------h-hhhHHHHHHHHHHHhh---hhhhh-hhH--
Q 039062 589 QKLGSSEPTKYVFMQY-ADQIMGLFLRVFAC-RSAT------------V-HEEAMLAIGALAYAAG---LDFAK-YMP-- 647 (871)
Q Consensus 589 ~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~-~~~~------------~-~~~a~~~l~~l~~~~~---~~~~~-~l~-- 647 (871)
....+. -.|..+ ....++.++.+|.. +... + +..|+.||+.++..-+ +.... .+.
T Consensus 530 is~np~----~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ 605 (778)
T 3opb_A 530 IFTNPG----LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTK 605 (778)
T ss_dssp HTSCHH----HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSH
T ss_pred hcCCHH----HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhc
Confidence 432211 111111 11567788888872 2111 1 5578999999987642 23322 343
Q ss_pred hHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhh---cccccH-HH---HHHHHHHHccCCCCCCcCCchHHHHHHHHH
Q 039062 648 DFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEE---KILPYC-DG---IMTQLLKDLSSNQLHRSVKPPIFSCFGDIA 720 (871)
Q Consensus 648 ~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~---~~~~~~-~~---i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~ 720 (871)
..+|.+...+.+. ...+|..|++++++++..... .+...- +. =++.|+.+++.. +.++|.+|.++++.++
T Consensus 606 ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~--D~~~r~AAagALAnLt 682 (778)
T 3opb_A 606 VYWSTIENLMLDE-NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS--DVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHHHHGGGCS-SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC--CHHHHHHHHHHHHHhc
Confidence 4889998888765 448999999999999874431 222111 22 277888888776 7889999999999987
Q ss_pred HhhccChHHhH--HHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccch--HHHHHH
Q 039062 721 LAIGENFEKYL--MYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYA--PHILQF 796 (871)
Q Consensus 721 ~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~i~~~ 796 (871)
...+......+ ...++.+...+.... ++ .++|..++.++..++.........+.+..+. +.....
T Consensus 683 s~~~~ia~~ll~~~~gi~~Ll~lL~~~~----~~-------~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~ 751 (778)
T 3opb_A 683 TTIPLIAKELLTKKELIENAIQVFADQI----DD-------IELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDA 751 (778)
T ss_dssp HHCHHHHHHHTTCHHHHHHHHHHHHHTT----TC-------HHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHH
T ss_pred CCChHHHHHHHHccccHHHHHHHHhccC----CC-------HHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHH
Confidence 65443212111 245566666665520 02 4577788888888886332221223333332 356666
Q ss_pred HHHHhcCCCCCH
Q 039062 797 LDSMYMEKDMDE 808 (871)
Q Consensus 797 l~~~~~~~~~~~ 808 (871)
+..+++.++.++
T Consensus 752 l~~~lk~~~~~~ 763 (778)
T 3opb_A 752 LNMSLKRGDSGP 763 (778)
T ss_dssp HHHHHSSSSSCS
T ss_pred HHHHHhCCCchH
Confidence 777776654333
No 57
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.23 E-value=6.3e-08 Score=106.58 Aligned_cols=540 Identities=10% Similarity=0.060 Sum_probs=297.7
Q ss_pred HHHHHHHhhc-CCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhc--CCChHHHHHHHHHHHHHhhccCCCccch
Q 039062 93 IKTCLLNTLT-STVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVH--QLPAHVKQATLETLGYLCEEVSPDVVEQ 169 (871)
Q Consensus 93 i~~~ll~~l~-~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~--~~~~~~r~~al~~l~~l~~~~~~~~~~~ 169 (871)
+...|-..+. .++..+.--+...+..+.+.. ..||+ +++|++-+. ...+++|-.++.++.++.+.. ++.+ .
T Consensus 133 ll~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~---~~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~-~~~~-~ 206 (778)
T 3opb_A 133 LLNELQIRIHYGEDTHVTYLLSIILQLLNKFK---YNFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSF-QKDF-D 206 (778)
T ss_dssp HHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC---CCSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHH-HHHH-H
T ss_pred HHHHHHHHhhcCCCcchhHHHHHHHHHHHHcC---ccccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhC-chHH-H
Confidence 3334433333 334455555554444444443 46777 666666543 456788999999999888877 4444 4
Q ss_pred hhHHHHHHHHH-hhhcCCCCCHHHHHHHHHHHHHhhhcchh----cccChhhHHHHHHHHHHhh-ccCcHHHHHHHHHHH
Q 039062 170 DHVNKILTAVV-QGMNASEMNNDVRLAATRALYNALSFAQA----NFSNDMERDYIMRVVCEAT-QSAELKIRQAAFECL 243 (871)
Q Consensus 170 ~~~~~i~~~l~-~~l~~~~~~~~vr~~al~~l~~~~~~~~~----~~~~~~~~~~i~~~l~~~l-~~~~~~~~~~a~~~l 243 (871)
+.+..++..++ ..=. +.+..=...++.++..+++..+. .|..+.. .+.+.+.+ ...+..+..++++++
T Consensus 207 ~~~~~~~~~l~~e~~~--~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~----~~~l~~~~~~~~~~~~~~a~L~lL 280 (778)
T 3opb_A 207 KAVVDFMSSLIVEAEI--DVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGL----SKLFKKRVFEEQDLQFTKELLRLL 280 (778)
T ss_dssp HHHHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTH----HHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc--CCCCccHHHHHHHHHHHhcCCHHHHHHHHccccH----HHHHHHHHhcccchHHHHHHHHHH
Confidence 44445554333 1111 11112223455566665554432 2333333 34444443 335677778888888
Q ss_pred HHHHHH--hHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhh
Q 039062 244 VSISST--YYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPAL 321 (871)
Q Consensus 244 ~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 321 (871)
...+.. +..++.. ..++++...+++ +.++..|...+..+..... . ...-+..+
T Consensus 281 saACi~~~cR~~I~~---~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~------------~--------~~~si~~L 335 (778)
T 3opb_A 281 SSACIDETMRTYITE---NYLQLLERSLNV--EDVQIYSALVLVKTWSFTK------------L--------TCINLKQL 335 (778)
T ss_dssp HHHCCSHHHHHHHHH---HHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGT------------C--------TTCCHHHH
T ss_pred HHHhCCcHHHHHHHH---hHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCC------------C--------CcCcHHHH
Confidence 876643 3333332 334444455544 4677777766655543210 0 01112335
Q ss_pred HHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcC--CCcc--cchHHHHHhhhcC-CChhhHHHHHHHHHHhhc
Q 039062 322 VPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVG--DDIV--PLVIPFIEENIAK-PDWRQREAATYAFGSILE 396 (871)
Q Consensus 322 ~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~--~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~ 396 (871)
.+.+.+.+...+ . ..+..|.+.|..++.... +.+. +.+++.+.+.+.+ .+-...++++.++..+..
T Consensus 336 a~~~~~~L~~~~--~-------~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~ 406 (778)
T 3opb_A 336 SEIFINAISRRI--V-------PKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLST 406 (778)
T ss_dssp HHHHHHHTTTCC--H-------HHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCC--c-------cHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Confidence 556666555321 1 115556666665542110 0000 1223333333332 344566777777777765
Q ss_pred CCC--------------------h------h------hhhH----HH--HHHHHHHHHHccCCCcHHHHHHHHHHHHHHh
Q 039062 397 GPS--------------------P------D------KLLH----IV--NVALSFMLSALTKDPNNHVKDTTAWTLGRIF 438 (871)
Q Consensus 397 ~~~--------------------~------~------~~~~----~l--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~ 438 (871)
... + + .+.. .+ ..++|.+...+ .++++.+|..++++|+.++
T Consensus 407 ~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS 485 (778)
T 3opb_A 407 LPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNIT 485 (778)
T ss_dssp CCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHH
T ss_pred CCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHc
Confidence 321 0 0 0001 11 24778888888 9999999999999999998
Q ss_pred hhhccCCCCCCccchhhHHHHHHHHHHhccCC-h---HHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhcc
Q 039062 439 EFLHGSTIGTPIITQANCQQIITVLLQSMKDT-P---NVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHR 514 (871)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-~---~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~ 514 (871)
..-. ....-.-...++.|++.+.+. . .++..|+.+|.++.-...+......-.+ ...++.|+.++..
T Consensus 486 ~d~~-------~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~--~~aI~pLv~LL~~ 556 (778)
T 3opb_A 486 RSKN-------FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSA--LNAIPFLFELLPR 556 (778)
T ss_dssp TSGG-------GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCS--TTHHHHHHHTSCC
T ss_pred CCHH-------HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcc--ccchHHHHHHcCC
Confidence 6642 122222235788888888763 2 3799999999998754322100000011 1566777777662
Q ss_pred -CChh----------hhhHHHHHHHHHHHHHHhcC---CCc-HHHHH--HHHHHHHHHHHHhhhccCCChhhHHHHHHHH
Q 039062 515 -EDAG----------ESRLRTAAYETLNEVVRSST---DET-APMVL--QLVPVIMMELHKTLEGQKLSSDEREKQGELQ 577 (871)
Q Consensus 515 -~~~~----------~~~vr~~a~~~l~~l~~~~~---~~~-~~~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 577 (871)
+... +...+..|+.||..++.... +.. ...+. ..+|.+.+.+.+. . ..++
T Consensus 557 ~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~---------n----~~Vr 623 (778)
T 3opb_A 557 STPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE---------N----VPLQ 623 (778)
T ss_dssp SSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS---------S----HHHH
T ss_pred CCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC---------C----HHHH
Confidence 2100 00125689999999998753 122 22333 3666666665321 1 1477
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhhh----hhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh--HhHHH
Q 039062 578 GLLCGCLQVIIQKLGSSEPTKYVFM----QYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM--PDFYK 651 (871)
Q Consensus 578 ~~~~~~l~~l~~~~~~~~~~~~~~~----~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~i~~ 651 (871)
..+++++.+++..-..- ...+. +-...=++.++.+++..+.++|.+|..+|+.+....+......+ +..++
T Consensus 624 rAA~elI~NL~~~~e~i---~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~ 700 (778)
T 3opb_A 624 RSTLELISNMMSHPLTI---AAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIE 700 (778)
T ss_dssp HHHHHHHHHHHTSGGGT---GGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCcHHH---HHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHH
Confidence 88999999998522100 00011 11112378888999888999999999999998755543222233 34666
Q ss_pred HHHhhhcCC-cchhHHHHHHHHHHHHHHHhh-----hcccccH--HHHHHHHHHHccCCCC
Q 039062 652 YLEMGLQNF-EEYQVCAVTVGVVGDICRALE-----EKILPYC--DGIMTQLLKDLSSNQL 704 (871)
Q Consensus 652 ~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~-----~~~~~~~--~~i~~~l~~~l~~~~~ 704 (871)
.++..+++. ++.+++..++.++.+++...+ +.+..+. ..+...+.+.+++++.
T Consensus 701 ~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~ 761 (778)
T 3opb_A 701 NAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDS 761 (778)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSS
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCc
Confidence 667666652 456899999999999987322 2333332 4667778888887753
No 58
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.22 E-value=1.4e-09 Score=109.83 Aligned_cols=252 Identities=17% Similarity=0.191 Sum_probs=173.2
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhH
Q 039062 176 LTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLA 255 (871)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~ 255 (871)
++.+...+. ++++.+|..|+.+|..+-. +..++.+...+.++++.+|..++.+|..+... .
T Consensus 25 i~~L~~~L~--~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-----~ 85 (280)
T 1oyz_A 25 DDELFRLLD--DHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-----K 85 (280)
T ss_dssp HHHHHHHTT--CSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-----T
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-----c
Confidence 345667777 7899999999999988531 45677788888999999999999999876421 1
Q ss_pred HhHHHHHHHHHH-HhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccC
Q 039062 256 PYMQDIYSITAK-AVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEE 334 (871)
Q Consensus 256 ~~~~~l~~~~~~-~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 334 (871)
..+..+++.+.. ...++++.+|..++..+..++... ..+. +.+++.+...+.. +
T Consensus 86 ~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~-------------------~~~~----~~~~~~L~~~l~d--~ 140 (280)
T 1oyz_A 86 KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN-------------------PIYS----PKIVEQSQITAFD--K 140 (280)
T ss_dssp TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC-------------------GGGH----HHHHHHHHHHTTC--S
T ss_pred ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-------------------Cccc----HHHHHHHHHHhhC--C
Confidence 123345555543 457888999999999888876421 0111 2345555555431 1
Q ss_pred CcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHH
Q 039062 335 DQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFM 414 (871)
Q Consensus 335 d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l 414 (871)
+ +.+|..|..+|+.+.. +..++.+...+.++++.+|..++.+++.+.... +..++.+
T Consensus 141 ~-------~~vR~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L 197 (280)
T 1oyz_A 141 S-------TNVRRATAFAISVIND-------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCF 197 (280)
T ss_dssp C-------HHHHHHHHHHHHTC----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHH
T ss_pred C-------HHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHH
Confidence 1 5789888888876543 345667777888999999999999999985321 2457778
Q ss_pred HHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhcccCCCC
Q 039062 415 LSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGALYFLAQGYEDVGPS 494 (871)
Q Consensus 415 ~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~~l~~l~~~~~~~~~~ 494 (871)
...+ .|+++.||..++++|+++.. +..++.|+..+.+ +.|+..++.+|..+.
T Consensus 198 ~~~l-~d~~~~vR~~A~~aL~~~~~-----------------~~~~~~L~~~l~d-~~vr~~a~~aL~~i~--------- 249 (280)
T 1oyz_A 198 VEML-QDKNEEVRIEAIIGLSYRKD-----------------KRVLSVLCDELKK-NTVYDDIIEAAGELG--------- 249 (280)
T ss_dssp HHHT-TCSCHHHHHHHHHHHHHTTC-----------------GGGHHHHHHHHTS-SSCCHHHHHHHHHHC---------
T ss_pred HHHh-cCCCHHHHHHHHHHHHHhCC-----------------HhhHHHHHHHhcC-ccHHHHHHHHHHhcC---------
Confidence 8899 99999999999999998752 1356677777766 348889999998872
Q ss_pred CCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHH
Q 039062 495 SPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETL 530 (871)
Q Consensus 495 ~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l 530 (871)
. +..++.|...+.+.+ ++.++..+++++
T Consensus 250 ~------~~~~~~L~~~l~~~~--~~~~~~~~~~~l 277 (280)
T 1oyz_A 250 D------KTLLPVLDTMLYKFD--DNEIITSAIDKL 277 (280)
T ss_dssp C------GGGHHHHHHHHTTSS--CCHHHHHHHHHH
T ss_pred c------hhhhHHHHHHHhcCC--CcHHHHHHHHHh
Confidence 1 123444555555443 345555555554
No 59
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.17 E-value=1.9e-07 Score=113.16 Aligned_cols=575 Identities=11% Similarity=0.062 Sum_probs=300.3
Q ss_pred ChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHH
Q 039062 144 PAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRV 223 (871)
Q Consensus 144 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~ 223 (871)
+...|..|-..|..+-+. |+. +..+. ..+.+.+.+..+|..|+..+.+.+...=... ..+.+..+.+.
T Consensus 26 ~~~~r~~Ae~~L~~~~~~--p~~-----~~~~~----~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l-~~e~k~~Ir~~ 93 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEK--CPI-----CVPCG----LRLAEKTQVAIVRHFGLQILEHVVKFRWNGM-SRLEKVYLKNS 93 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTT-----HHHHH----HHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS-CHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhC--chH-----HHHHH----HHHHccCCCHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHH
Confidence 556788888888775332 221 12222 2221226789999999999999875321111 12334444444
Q ss_pred HHHhhc-------cCcHHHHHHHHHHHHHHHHH-hHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhh
Q 039062 224 VCEATQ-------SAELKIRQAAFECLVSISST-YYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDIL 295 (871)
Q Consensus 224 l~~~l~-------~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~ 295 (871)
++..+. +.+..+|.....++..++.. +|..|...++.+++.+ ++ ++..+..++.++..+++.....
T Consensus 94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~----~~-~~~~~e~~L~iL~~L~Eev~~~- 167 (1204)
T 3a6p_A 94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLS----KQ-GETQTELVMFILLRLAEDVVTF- 167 (1204)
T ss_dssp HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHH----HT-CHHHHHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHh----cC-CHHHHHHHHHHHHHHHHHHccc-
Confidence 444432 14688999999999999987 4667877777777643 33 4455666788888887753211
Q ss_pred hhhcCCCCCCCCCch---hhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHH
Q 039062 296 EEYGSDFTGNSDIPC---FYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFI 372 (871)
Q Consensus 296 ~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l 372 (871)
+ .....+. ...+...++.+++.+...+...- ..| + ..+... .. +
T Consensus 168 -~------~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~-------~~~--~------------~~~~~~-~~----~ 214 (1204)
T 3a6p_A 168 -Q------TLPPQRRRDIQQTLTQNMERIFSFLLNTLQENV-------NKY--Q------------QVKTDT-SQ----E 214 (1204)
T ss_dssp -C------CSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-------HHH--H------------HHTTCS-TT----H
T ss_pred -c------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH--h------------cccccc-cc----h
Confidence 0 0000000 01112223333333332221000 000 0 000000 00 0
Q ss_pred HhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccc
Q 039062 373 EENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIIT 452 (871)
Q Consensus 373 ~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 452 (871)
.. ...+...+..++.++....+-.....+...-..+++.++..+ . ++.+|.+|+.||..+......+. ......
T Consensus 215 ~~--~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l-~--~~~lr~~A~ecL~~i~s~~~~~~-~~~~li 288 (1204)
T 3a6p_A 215 SK--AQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLL-N--EQELQLGAAECLLIAVSRKGKLE-DRKPLM 288 (1204)
T ss_dssp HH--HHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGG-G--CTTTHHHHHHHHHHHHTCCSCHH-HHGGGG
T ss_pred hh--hhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHc-C--CHHHHHHHHHHHHHHHhCCCChh-hHHHHH
Confidence 00 001223555666666655543321111111123677777777 5 46789999999999987542100 000000
Q ss_pred hhhH-HHHHHHHHHhcc-------C--ChHHHHHHHHHHHHHHhhccc---CCCCCCCcchHHHHHHHHHHhhccCChhh
Q 039062 453 QANC-QQIITVLLQSMK-------D--TPNVAEKACGALYFLAQGYED---VGPSSPLTPFFQEIVQSLLTVTHREDAGE 519 (871)
Q Consensus 453 ~~~~-~~il~~l~~~l~-------d--~~~v~~~a~~~l~~l~~~~~~---~~~~~~l~~~~~~il~~l~~~l~~~~~~~ 519 (871)
..+ ...+..+++... + +..+.+..|..+..+.+.+.. ........+.+..+++.++.++..++
T Consensus 289 -~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~--- 364 (1204)
T 3a6p_A 289 -VLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPS--- 364 (1204)
T ss_dssp -GGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSC---
T ss_pred -HHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCcc---
Confidence 111 112233333321 1 234555666655555432211 01112356778899999999988764
Q ss_pred hhHHHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHHHHHhhhcc-------------CCChhh-HHHHHHHHHHHH
Q 039062 520 SRLRTAAYETLNEVVRSST----DETAPMVLQLVPVIMMELHKTLEGQ-------------KLSSDE-REKQGELQGLLC 581 (871)
Q Consensus 520 ~~vr~~a~~~l~~l~~~~~----~~~~~~~~~ll~~l~~~l~~~~~~~-------------~~~~~~-~~~~~~~~~~~~ 581 (871)
..+-..++.....+.+... ..+.+++..+++.+...+.+..... ..+.++ ...+.+.|....
T Consensus 365 ~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~ 444 (1204)
T 3a6p_A 365 QFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQG 444 (1204)
T ss_dssp HHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHH
Confidence 3566667777777776542 1244566666666643332210000 011111 134556777777
Q ss_pred HHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHccc-------------------------CcchhhhHHHHHHHHHH
Q 039062 582 GCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACR-------------------------SATVHEEAMLAIGALAY 636 (871)
Q Consensus 582 ~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-------------------------~~~~~~~a~~~l~~l~~ 636 (871)
..+..++...+.. . +..+.+.+...+... .....++...++..++.
T Consensus 445 d~l~~i~~v~p~~------~---l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~ 515 (1204)
T 3a6p_A 445 EVMRLACRLDPKT------S---FQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVIT 515 (1204)
T ss_dssp HHHHHHHHHCHHH------H---HHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHH------H---HHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 7777776654322 1 122223332322220 01123445556666665
Q ss_pred Hhhhhh-hhhhH-hHHHHHHhhhc--CCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCC---------
Q 039062 637 AAGLDF-AKYMP-DFYKYLEMGLQ--NFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQ--------- 703 (871)
Q Consensus 637 ~~~~~~-~~~l~-~i~~~l~~~l~--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~--------- 703 (871)
...... .++++ .++|.++..+- +.+++.++..++.+++.+...+.. -..+++.+++.++..+.+..
T Consensus 516 ~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~ 594 (1204)
T 3a6p_A 516 QMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFETVEESKAPRT 594 (1204)
T ss_dssp HHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCCTTCSTTSCCC
T ss_pred HHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccCCccccccccc
Confidence 552211 23333 24455554432 345678999999999988777652 23578888888888775421
Q ss_pred -CCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCcc
Q 039062 704 -LHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPK 782 (871)
Q Consensus 704 -~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~ 782 (871)
...+++..+..++..++..++..|.||++.+...+...+..... -+. .-+-...+++..+...++.
T Consensus 595 ~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~---l~~-------~e~~~L~eal~~ia~~~~~--- 661 (1204)
T 3a6p_A 595 RAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELL---LTQ-------MEKCALMEALVLISNQFKN--- 661 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTT---SCH-------HHHHHHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCccc---ccH-------HHHHHHHHHHHHHhccCCC---
Confidence 12368889999999999999999999999999999988864310 011 1122344455444332222
Q ss_pred ccccccchHHHHHHHHHHhc
Q 039062 783 TQLLIPYAPHILQFLDSMYM 802 (871)
Q Consensus 783 ~~~~~~~~~~i~~~l~~~~~ 802 (871)
.+.-..|+..+++.+...+.
T Consensus 662 ~~~~~~~l~~ll~P~~~~w~ 681 (1204)
T 3a6p_A 662 YERQKVFLEELMAPVASIWL 681 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 23344567777777766665
No 60
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.12 E-value=1.2e-06 Score=98.65 Aligned_cols=312 Identities=10% Similarity=0.050 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHcCCCcccchHHHHHhhhc---CCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCC-
Q 039062 347 MAGGTCLGLVARTVGDDIVPLVIPFIEENIA---KPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDP- 422 (871)
Q Consensus 347 ~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~---~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~- 422 (871)
..|...|+.+-....+ ..+..+.+++. +.+..+|.+|++++|.+..+.. +. .+..+...+ .++
T Consensus 376 ~sA~aSLGlIh~g~~~----~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~-~~-------~~~lL~~~L-~~~~ 442 (963)
T 4ady_A 376 FTATASLGVIHKGNLL----EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG-RD-------TTDYLKNII-VENS 442 (963)
T ss_dssp HHHHHHHHHHTSSCTT----THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT-HH-------HHHHHHHHH-HHHS
T ss_pred HHHHHHhhhhccCchH----HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc-HH-------HHHHHHHHH-cCcc
Confidence 3445555555443333 34566666665 5678899999999999998864 32 234444444 333
Q ss_pred -------cHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCC
Q 039062 423 -------NNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPS 494 (871)
Q Consensus 423 -------~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~ 494 (871)
++.+|..|+..||-+.-... . +.+++.|.+.+.+ +..++..|+.+|+.+.-+-
T Consensus 443 ~~~~~~~~~~ir~gAaLGLGla~~GS~---------~----eev~e~L~~~L~dd~~~~~~~AalALGli~vGT------ 503 (963)
T 4ady_A 443 GTSGDEDVDVLLHGASLGIGLAAMGSA---------N----IEVYEALKEVLYNDSATSGEAAALGMGLCMLGT------ 503 (963)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHSTTCC---------C----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC------
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCC---------C----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc------
Confidence 37889999999988654332 1 3566667776665 5566778888888664321
Q ss_pred CCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHH
Q 039062 495 SPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQG 574 (871)
Q Consensus 495 ~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~ 574 (871)
.=...+..++..+. +.+ +..+|..+..+|+.+.-..++. .+.+++.+... +++
T Consensus 504 -gn~~ai~~LL~~~~----e~~--~e~vrR~aalgLGll~~g~~e~--------~~~li~~L~~~--------~dp---- 556 (963)
T 4ady_A 504 -GKPEAIHDMFTYSQ----ETQ--HGNITRGLAVGLALINYGRQEL--------ADDLITKMLAS--------DES---- 556 (963)
T ss_dssp -CCHHHHHHHHHHHH----HCS--CHHHHHHHHHHHHHHTTTCGGG--------GHHHHHHHHHC--------SCH----
T ss_pred -CCHHHHHHHHHHHh----ccC--cHHHHHHHHHHHHhhhCCChHH--------HHHHHHHHHhC--------CCH----
Confidence 11233444444333 222 3468888999999885544432 23333343321 222
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHH-cccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHH
Q 039062 575 ELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVF-ACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYL 653 (871)
Q Consensus 575 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l 653 (871)
.+|..++.+++.- ..|.. - ...++.+++.+ ++.+..+|..|..+|+.+.- |+ +..++.+
T Consensus 557 ~vRygaa~alglA--yaGTG------n----~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~--g~------~e~v~rl 616 (963)
T 4ady_A 557 LLRYGGAFTIALA--YAGTG------N----NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLL--RD------YTTVPRI 616 (963)
T ss_dssp HHHHHHHHHHHHH--TTTSC------C----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTS--SS------CSSHHHH
T ss_pred HHHHHHHHHHHHH--hcCCC------C----HHHHHHHHHHhccCCcHHHHHHHHHHHHhhcc--CC------HHHHHHH
Confidence 2333333333222 22322 1 23344344333 45566799999988887752 22 1345555
Q ss_pred HhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHH
Q 039062 654 EMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMY 733 (871)
Q Consensus 654 ~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~ 733 (871)
+..+.+..++.+|..+..++|.++...+ ...+++.|.....++ +..||.+|+.++|.+.....+...|.+..
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~------~~~aid~L~~L~~D~--d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~ 688 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKG------LQSAIDVLDPLTKDP--VDFVRQAAMIALSMILIQQTEKLNPQVAD 688 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSC------CHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHSTTCCTTTCTTHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCC------cHHHHHHHHHHccCC--CHHHHHHHHHHHHHHhcCCccccchHHHH
Confidence 5666556678999999999998753222 256677777777666 78899999999999988777766678888
Q ss_pred HHHHHHHHHhhc
Q 039062 734 AMPMLQSAADLS 745 (871)
Q Consensus 734 i~~~l~~~l~~~ 745 (871)
++..+.....++
T Consensus 689 ~l~~L~~~~~dk 700 (963)
T 4ady_A 689 INKNFLSVITNK 700 (963)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHhcc
Confidence 888888777653
No 61
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.07 E-value=1.9e-08 Score=101.52 Aligned_cols=251 Identities=14% Similarity=0.061 Sum_probs=170.8
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 039062 39 LLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAK 118 (871)
Q Consensus 39 ~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~ 118 (871)
+..|...+.+ .++.+|..|+..|.+.- + ....+.|+..+.++++.+|..++.+++.
T Consensus 25 i~~L~~~L~~--~~~~vr~~A~~~L~~~~------------------~----~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 80 (280)
T 1oyz_A 25 DDELFRLLDD--HNSLKRISSARVLQLRG------------------G----QDAVRLAIEFCSDKNYIRRDIGAFILGQ 80 (280)
T ss_dssp HHHHHHHTTC--SSHHHHHHHHHHHHHHC------------------C----HHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHccC------------------C----chHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4455566664 47899999988886531 1 2345567788899999999999998887
Q ss_pred HHhhhcCCCCchHHHHHHHH-hhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 039062 119 VAGIELPQKQWPELIVSLLS-NVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAAT 197 (871)
Q Consensus 119 i~~~~~~~~~~~~ll~~L~~-~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al 197 (871)
+... ....+.+++.|.. .+.++++.+|..++.+|+.+.... ....+.+++.+...+. |+++.||..|+
T Consensus 81 l~~~---~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~------~~~~~~~~~~L~~~l~--d~~~~vR~~a~ 149 (280)
T 1oyz_A 81 IKIC---KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN------PIYSPKIVEQSQITAF--DKSTNVRRATA 149 (280)
T ss_dssp SCCC---TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC------GGGHHHHHHHHHHHTT--CSCHHHHHHHH
T ss_pred hccc---cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC------CcccHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 6421 1355667777764 467788899999999999887543 2234567778888888 89999999999
Q ss_pred HHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHH
Q 039062 198 RALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVA 277 (871)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 277 (871)
.+++.+-. +..++.+...+.++++.+|..++..+..+... -+..++.+...+.++++.+|
T Consensus 150 ~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--------~~~~~~~L~~~l~d~~~~vR 209 (280)
T 1oyz_A 150 FAISVIND------------KATIPLLINLLKDPNGDVRNWAAFAININKYD--------NSDIRDCFVEMLQDKNEEVR 209 (280)
T ss_dssp HHHHTC---------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHhcCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC--------cHHHHHHHHHHhcCCCHHHH
Confidence 99987422 22456677778889999999999999876311 12345555567788889999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHH
Q 039062 278 LQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVA 357 (871)
Q Consensus 278 ~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~ 357 (871)
..|+..+..+.. +..++.+...+.. +.+|..+..+|+.+.
T Consensus 210 ~~A~~aL~~~~~-----------------------------~~~~~~L~~~l~d-----------~~vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 210 IEAIIGLSYRKD-----------------------------KRVLSVLCDELKK-----------NTVYDDIIEAAGELG 249 (280)
T ss_dssp HHHHHHHHHTTC-----------------------------GGGHHHHHHHHTS-----------SSCCHHHHHHHHHHC
T ss_pred HHHHHHHHHhCC-----------------------------HhhHHHHHHHhcC-----------ccHHHHHHHHHHhcC
Confidence 999888766532 1234555555431 126777778777663
Q ss_pred HHcCCCcccchHHHHHhhhcC-CChhhHHHHHHHH
Q 039062 358 RTVGDDIVPLVIPFIEENIAK-PDWRQREAATYAF 391 (871)
Q Consensus 358 ~~~~~~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l 391 (871)
. +..++.+.+.+.+ ++..++..++..+
T Consensus 250 ~-------~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 250 D-------KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp C-------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred c-------hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 2 3556666666643 4455555555444
No 62
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.05 E-value=4.8e-09 Score=113.50 Aligned_cols=374 Identities=12% Similarity=0.077 Sum_probs=227.0
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcc
Q 039062 411 LSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYE 489 (871)
Q Consensus 411 ~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~ 489 (871)
+|.++..+ .++++.++..|+++|..++..... ....-.-...+|.|++.|.+ ++.++..|+++|.+++..-.
T Consensus 4 l~~lv~~L-~s~~~~~q~~A~~~L~~l~~~~~~------~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~ 76 (457)
T 1xm9_A 4 IPKAVQYL-SSQDEKYQAIGAYYIQHTCFQDES------AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST 76 (457)
T ss_dssp HHHHHHHH-HSSCTHHHHHHHHHHHHHTSSCSS------HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHH-CCCCHHHHHHHHHHHHHHHcCChH------HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 56778888 888999999999999998854321 11122233578999999986 78999999999999974210
Q ss_pred cCCCCCCCcchH--HHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhcc--CC
Q 039062 490 DVGPSSPLTPFF--QEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQ--KL 565 (871)
Q Consensus 490 ~~~~~~~l~~~~--~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~--~~ 565 (871)
.....+ ...++.++.++.... +..+++.+..+|..++.. +..-...+...+|.+++.+....... ..
T Consensus 77 ------~~k~~i~~~G~i~~Lv~lL~~~~--~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~ 147 (457)
T 1xm9_A 77 ------TNKLETRRQNGIREAVSLLRRTG--NAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGN 147 (457)
T ss_dssp ------HHHHHHHHTTCHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---
T ss_pred ------HHHHHHHHcCCHHHHHHHHhhCC--CHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCc
Confidence 011111 123667777777322 468899999999999987 33223344588899998883210000 00
Q ss_pred ChhhHH-HHHHHHHHHHHHHHHHHHHhCCCCCchhhhhh-hH--HHHHHHHHHHHcc------cCcchhhhHHHHHHHHH
Q 039062 566 SSDERE-KQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQ-YA--DQIMGLFLRVFAC------RSATVHEEAMLAIGALA 635 (871)
Q Consensus 566 ~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~--~~i~~~l~~~l~~------~~~~~~~~a~~~l~~l~ 635 (871)
+.+.++ ....+...+++++.+++.. + + ... .. +..++.++.++.+ .+..+++.++.++..++
T Consensus 148 ~~~~~e~~~~~v~~~a~~aL~nLs~~-~-~------~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 219 (457)
T 1xm9_A 148 SNMSREVVDPEVFFNATGCLRNLSSA-D-A------GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219 (457)
T ss_dssp ------CCCHHHHHHHHHHHHHHTTS-H-H------HHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred cchhcccccHHHHHHHHHHHHHHccC-H-H------HHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence 000000 0123556788888888753 1 1 111 11 2566677776664 34567777777666664
Q ss_pred HHhhh--------------------------------------------------hhhh-hhHhHHHHHHhhhcCCcchh
Q 039062 636 YAAGL--------------------------------------------------DFAK-YMPDFYKYLEMGLQNFEEYQ 664 (871)
Q Consensus 636 ~~~~~--------------------------------------------------~~~~-~l~~i~~~l~~~l~~~~~~~ 664 (871)
..... ...- .-..+++.+...+...++..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~ 299 (457)
T 1xm9_A 220 YRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299 (457)
T ss_dssp TTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHH
T ss_pred cchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHH
Confidence 21100 0000 11346777777776666678
Q ss_pred HHHHHHHHHHHHHHHhhh---cc-cccH--HHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHH
Q 039062 665 VCAVTVGVVGDICRALEE---KI-LPYC--DGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPML 738 (871)
Q Consensus 665 v~~~a~~~l~~l~~~~~~---~~-~~~~--~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l 738 (871)
++..|+++|++++..-.. .+ ...+ ...++.|++++.++ +.+++..+++++..++..-. .-...-...+|.+
T Consensus 300 ~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~--~~~v~~~A~~aL~nls~~~~-~~~~i~~~~i~~L 376 (457)
T 1xm9_A 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG--NSDVVRSGASLLSNMSRHPL-LHRVMGNQVFPEV 376 (457)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSGG-GHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC--CHhHHHHHHHHHHHHhcCHH-HHHHHHHhhhHHH
Confidence 999999999998753211 11 1111 25578899999887 67899999999999987432 1122234678888
Q ss_pred HHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039062 739 QSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLL 818 (871)
Q Consensus 739 ~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l 818 (871)
.+.+... +.+ .+....+...++.++..++..-.. ....+.. ...++.+..+++.. .++.+++.|..++
T Consensus 377 v~lL~~~------~~~-~~~~~~v~~~~l~~l~ni~~~~~~--~~~~i~~--~g~l~~L~~L~~~~-~~~~i~~~A~~~L 444 (457)
T 1xm9_A 377 TRLLTSH------TGN-TSNSEDILSSACYTVRNLMASQPQ--LAKQYFS--SSMLNNIINLCRSS-ASPKAAEAARLLL 444 (457)
T ss_dssp HHTTTSC------CSC-STTHHHHHHHHHHHHHHHHTTCTH--HHHHHCC--HHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHhccCC------CCC-CCCcHHHHHHHHHHHHHHHhcCHH--HHHHHHH--cCCHHHHHHHHcCC-CcHHHHHHHHHHH
Confidence 8888654 110 000123455666777666643110 1111111 15677888888753 3788999999998
Q ss_pred HHHHh
Q 039062 819 GDLAD 823 (871)
Q Consensus 819 ~~i~~ 823 (871)
..+..
T Consensus 445 ~~~~~ 449 (457)
T 1xm9_A 445 SDMWS 449 (457)
T ss_dssp HTTSS
T ss_pred HHHHc
Confidence 87654
No 63
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.04 E-value=2.4e-08 Score=108.03 Aligned_cols=359 Identities=14% Similarity=0.089 Sum_probs=212.5
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhccc
Q 039062 133 IVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFS 212 (871)
Q Consensus 133 l~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~ 212 (871)
++.|+..+.++++..+..|..+|..++..- ++.-..-.....++.++..+. ++++.++..|..+|.++....+..-
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~--s~~~~~~~~A~~aL~nLa~~~~~~k- 79 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLR--SPNQNVQQAAAGALRNLVFRSTTNK- 79 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSSCHHHH-
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHH-
Confidence 577788888889999999999999988543 211001123456788889998 6889999999999999875311110
Q ss_pred ChhhHHHHHHHHHHhhc-cCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHh--------hC--------CChh
Q 039062 213 NDMERDYIMRVVCEATQ-SAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAV--------RE--------DEEP 275 (871)
Q Consensus 213 ~~~~~~~i~~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~--------~~--------~~~~ 275 (871)
........++.+.+++. +++++++..++.+|..++.. +..-...+...++.++..+ .+ .+.+
T Consensus 80 ~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHH
Confidence 00001124777888888 78899999999999999865 2111111124445454455 11 2456
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhccc--CCcccccccccHhHHHHHHH
Q 039062 276 VALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQE--EDQDQEEGAWNIAMAGGTCL 353 (871)
Q Consensus 276 ~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~--~d~~~~~~~~~~r~~a~~~l 353 (871)
+...|...+..++... +. ...+.. .+..+|.|+..+.... .+.++ .....+..+|
T Consensus 159 v~~~a~~aL~nLs~~~-~~----------------~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~-----~~~e~a~~~L 215 (457)
T 1xm9_A 159 VFFNATGCLRNLSSAD-AG----------------RQTMRN-YSGLIDSLMAYVQNCVAASRCDD-----KSVENCMCVL 215 (457)
T ss_dssp HHHHHHHHHHHHTTSH-HH----------------HHHHTT-STTHHHHHHHHHHHHHHHTCTTC-----TTHHHHHHHH
T ss_pred HHHHHHHHHHHHccCH-HH----------------HHHHHH-cCCCHHHHHHHHHhhccccCCch-----HHHHHHHHHH
Confidence 6668888888887641 10 111110 0134555555444210 00100 1111122222
Q ss_pred HHHHH----------------------------HcC----------------------C---Ccc-cchHHHHHhhhc-C
Q 039062 354 GLVAR----------------------------TVG----------------------D---DIV-PLVIPFIEENIA-K 378 (871)
Q Consensus 354 ~~l~~----------------------------~~~----------------------~---~~~-~~l~~~l~~~l~-~ 378 (871)
..++. +++ + .++ +..++.+...+. +
T Consensus 216 ~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~ 295 (457)
T 1xm9_A 216 HNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKS 295 (457)
T ss_dssp HHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHC
T ss_pred HhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhc
Confidence 22210 000 0 000 122333333443 3
Q ss_pred CChhhHHHHHHHHHHhhcCCChh--hh-hHHH--HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccch
Q 039062 379 PDWRQREAATYAFGSILEGPSPD--KL-LHIV--NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQ 453 (871)
Q Consensus 379 ~~~~~r~~a~~~l~~l~~~~~~~--~~-~~~l--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 453 (871)
.+...+++++.+++.++.+.... .+ ...+ ...+|.++..+ .++++.++..|+|+|+.++.... ...
T Consensus 296 ~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL-~~~~~~v~~~A~~aL~nls~~~~--------~~~ 366 (457)
T 1xm9_A 296 KKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLL-QSGNSDVVRSGASLLSNMSRHPL--------LHR 366 (457)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSGG--------GHH
T ss_pred CCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHH-hCCCHhHHHHHHHHHHHHhcCHH--------HHH
Confidence 56789999999999999764211 12 1222 35689999999 99999999999999999987532 223
Q ss_pred hhHHHHHHHHHHhccCC-------hHHHHHHHHHHHHHHhhcccCCCCCCCcchH--HHHHHHHHHhhccCChhhhhHHH
Q 039062 454 ANCQQIITVLLQSMKDT-------PNVAEKACGALYFLAQGYEDVGPSSPLTPFF--QEIVQSLLTVTHREDAGESRLRT 524 (871)
Q Consensus 454 ~~~~~il~~l~~~l~d~-------~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~--~~il~~l~~~l~~~~~~~~~vr~ 524 (871)
..-...+|.|++.|... +.+...++.+|.+++.+- ......+ ...++.+..++.+.. +.+++.
T Consensus 367 ~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~------~~~~~~i~~~g~l~~L~~L~~~~~--~~~i~~ 438 (457)
T 1xm9_A 367 VMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ------PQLAKQYFSSSMLNNIINLCRSSA--SPKAAE 438 (457)
T ss_dssp HHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC------THHHHHHCCHHHHHHHHHHHHCTT--CHHHHH
T ss_pred HHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC------HHHHHHHHHcCCHHHHHHHHcCCC--cHHHHH
Confidence 33456889999988852 357888999999887531 1111111 245666666666551 346788
Q ss_pred HHHHHHHHHHHh
Q 039062 525 AAYETLNEVVRS 536 (871)
Q Consensus 525 ~a~~~l~~l~~~ 536 (871)
.|...|..+..+
T Consensus 439 ~A~~~L~~~~~~ 450 (457)
T 1xm9_A 439 AARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHHTTSSS
T ss_pred HHHHHHHHHHcc
Confidence 888888776644
No 64
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.03 E-value=3.9e-09 Score=104.82 Aligned_cols=228 Identities=17% Similarity=0.193 Sum_probs=162.5
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhc
Q 039062 221 MRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQ-DIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYG 299 (871)
Q Consensus 221 ~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~ 299 (871)
.+.+...+.+++++++..++.++..++..........+. ..++.++..+.+.+++++..|+..+..++....
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~------- 86 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN------- 86 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH-------
Confidence 455667777889999999999998777664443333333 577888889999889999999999988875211
Q ss_pred CCCCCCCCCchhhhHHhhh-hhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCC---c-ccchHHHHHh
Q 039062 300 SDFTGNSDIPCFYFIKQAL-PALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDD---I-VPLVIPFIEE 374 (871)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~-~~~l~~~l~~ 374 (871)
......+ ...+|.++..+.. ++ +.++..|..+|..++...... + -...++.+..
T Consensus 87 ------------~~~~~i~~~g~i~~L~~lL~~--~~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 145 (252)
T 4db8_A 87 ------------EQIQAVIDAGALPALVQLLSS--PN-------EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145 (252)
T ss_dssp ------------HHHHHHHHTTHHHHHHHGGGC--SC-------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred ------------HHHHHHHHcCCHHHHHHHHcC--CC-------HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHH
Confidence 1111111 2356777776653 11 368888888888886543211 1 1246777888
Q ss_pred hhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccch
Q 039062 375 NIAKPDWRQREAATYAFGSILEGPSPDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQ 453 (871)
Q Consensus 375 ~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 453 (871)
.+.++++.+|..++.+++.++.+. ++.....+ ...++.++..+ .++++.+|..++++|++++...+ ....
T Consensus 146 lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~-------~~~~ 216 (252)
T 4db8_A 146 LLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGN-------EQKQ 216 (252)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHGG-GCSSHHHHHHHHHHHHHHTTSCH-------HHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHH-CCCCHHHHHHHHHHHHHHhcCCH-------HHHH
Confidence 888999999999999999999864 23322222 46789999999 99999999999999999985432 1111
Q ss_pred hhH-HHHHHHHHHhccC-ChHHHHHHHHHHHHHH
Q 039062 454 ANC-QQIITVLLQSMKD-TPNVAEKACGALYFLA 485 (871)
Q Consensus 454 ~~~-~~il~~l~~~l~d-~~~v~~~a~~~l~~l~ 485 (871)
... ...++.+++.+.+ ++.++..|+++|.+++
T Consensus 217 ~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 217 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 112 2478888888886 7899999999998875
No 65
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.02 E-value=1.4e-08 Score=100.82 Aligned_cols=232 Identities=17% Similarity=0.177 Sum_probs=166.0
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhc
Q 039062 221 MRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQ-DIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYG 299 (871)
Q Consensus 221 ~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~ 299 (871)
++.+.+.+.+++++++..++.++..++...+........ ..++.++..+.+.+.+++..|+..+..++....+
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~------ 77 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE------ 77 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH------
Confidence 456777888889999999999999998766544333333 5778888889999999999999999888753111
Q ss_pred CCCCCCCCCchhhhHHhhh-hhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCC---Cc-ccchHHHHHh
Q 039062 300 SDFTGNSDIPCFYFIKQAL-PALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGD---DI-VPLVIPFIEE 374 (871)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~-~~~l~~~l~~ 374 (871)
...... ...++.++..+.. ++ ..++..|..+|..++...++ .+ -...++.+.+
T Consensus 78 -------------~~~~~~~~~~i~~l~~ll~~--~~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 135 (252)
T 4hxt_A 78 -------------AIKAIVDAGGVEVLVKLLTS--TD-------SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK 135 (252)
T ss_dssp -------------HHHHHHHTTHHHHHHHHTTC--SS-------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred -------------HHHHHHHCCCHHHHHHHHcC--CC-------HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 111111 2356667666642 12 36788888888888753211 11 1245777778
Q ss_pred hhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccch
Q 039062 375 NIAKPDWRQREAATYAFGSILEGPSPDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQ 453 (871)
Q Consensus 375 ~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 453 (871)
.+.++++..|..++.+++.++... +....... ...++.++..+ .++++.+|..++++|++++...+. ....
T Consensus 136 ~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~------~~~~ 207 (252)
T 4hxt_A 136 LLTSTDSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPTS------AIKA 207 (252)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSBHH------HHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCcCHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHH------HHHH
Confidence 888999999999999999999864 23222222 46889999999 999999999999999999864321 1111
Q ss_pred hhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhc
Q 039062 454 ANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGY 488 (871)
Q Consensus 454 ~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~ 488 (871)
-.-...++.+++.+.+ ++.++..|+++|.+++...
T Consensus 208 l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 208 IVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 1123478899998886 7899999999999998753
No 66
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.01 E-value=2.7e-08 Score=98.70 Aligned_cols=240 Identities=15% Similarity=0.133 Sum_probs=162.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcc
Q 039062 132 LIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANF 211 (871)
Q Consensus 132 ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~ 211 (871)
-++.|++.+.++++.+|..|+.+|..++... ++....-.-...++.+...+. +++..+|..|+.++.++....+...
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHcCChHHH
Confidence 4688889999989999999999999998764 211101112357788889998 6789999999999999875322111
Q ss_pred cChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhCCChhHHHHHHHHHHHHHHH
Q 039062 212 SNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQ-DIYSITAKAVREDEEPVALQAIEFWSSICDE 290 (871)
Q Consensus 212 ~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~ 290 (871)
. .......++.+...+.+++++++..++.+|..++...+........ ..++.++..+.+.+++++..|+..+..++..
T Consensus 80 ~-~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 80 K-AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp H-HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred H-HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 0 0011236788888899999999999999999998544433222222 3566666677777777777777776666442
Q ss_pred HHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHH
Q 039062 291 EIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIP 370 (871)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~ 370 (871)
.. ..... + . -...++
T Consensus 159 ~~-------------------~~~~~--------~-------------------------------~-------~~~~i~ 173 (252)
T 4hxt_A 159 PD-------------------EAIKA--------I-------------------------------V-------DAGGVE 173 (252)
T ss_dssp CH-------------------HHHHH--------H-------------------------------H-------HTTHHH
T ss_pred CH-------------------HHHHH--------H-------------------------------H-------HCcCHH
Confidence 10 00000 0 0 012334
Q ss_pred HHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhc
Q 039062 371 FIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 371 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (871)
.+...+.++++.+|..++.+++.++.+. +....... ...++.+...+ .++++.+|..|+++|++++....
T Consensus 174 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 174 VLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAIVDAGGVEVLQKLL-TSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHH-CCCcHHHHHHHHHHHHHHHcCCC
Confidence 4445556667788888888888888743 23222222 35789999999 99999999999999999998765
No 67
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.01 E-value=5.3e-08 Score=111.18 Aligned_cols=293 Identities=8% Similarity=0.069 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhh
Q 039062 523 RTAAYETLNEVVRSS-TDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVF 601 (871)
Q Consensus 523 r~~a~~~l~~l~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 601 (871)
+..+...+..++... +....+ ..+++.+.+.+.+.. +. ..++..+..++...+... .+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~--------~~-------~~a~~~~~~~~~~~~~~~----~~ 89 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEHDVP--EHFFGELAKGIKDKK--------TA-------ANAMQAVAHIANQSNLSP----SV 89 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSSSCC--HHHHHHHHHHHTSHH--------HH-------HHHHHHHHHHTCTTTCCT----TT
T ss_pred HHHHHHHHHHHHhccccccccc--hhHHHHHHHHHhccC--------CH-------HHHHHHHHHHHHhcCCCC----Cc
Confidence 345666666666543 233333 256666666554321 11 447888888887776531 26
Q ss_pred hhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh
Q 039062 602 MQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE 681 (871)
Q Consensus 602 ~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 681 (871)
.||+-++++.++..+.+....||++|-.+...++..+.+.- +..++|.++..+.+...|+.+..|+.+++.++...+
T Consensus 90 e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a---~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~ 166 (986)
T 2iw3_A 90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA---IKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK 166 (986)
T ss_dssp HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH
T ss_pred ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH
Confidence 78888899999999999888999999999999998876532 477888888888766679999999999999999888
Q ss_pred hcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhcc-ChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHH
Q 039062 682 EKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGE-NFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTN 760 (871)
Q Consensus 682 ~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~ 760 (871)
+.+..++++++|.+.+.+.+. ..+|+..+..++..++..+++ ++.|+++.++. ++... +
T Consensus 167 ~~~~~~~~~~~p~~~~~~~d~--k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~----~~~~p--------~------ 226 (986)
T 2iw3_A 167 DQVALRMPELIPVLSETMWDT--KKEVKAAATAAMTKATETVDNKDIERFIPSLIQ----CIADP--------T------ 226 (986)
T ss_dssp HHHHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHH----HHHCT--------T------
T ss_pred HHHHHhccchhcchHhhcccC--cHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHH----HhcCh--------h------
Confidence 889889999999999999877 789999999999999998876 46676665554 44432 1
Q ss_pred HHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcc--cccccccchHH
Q 039062 761 SLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGS--NAGSLIQQSLT 838 (871)
Q Consensus 761 ~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~--~~~~~l~~~~~ 838 (871)
.+-+|+..|.....- .+.-.|-+.-+.|.|.+-+.+ ++..+++.+.-.+.+|++...+ +..||+|.
T Consensus 227 ----~~~~~~~~l~~~tfv---~~v~~~~l~~~~p~l~r~l~~--~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~--- 294 (986)
T 2iw3_A 227 ----EVPETVHLLGATTFV---AEVTPATLSIMVPLLSRGLNE--RETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK--- 294 (986)
T ss_dssp ----HHHHHHHHHTTCCCC---SCCCHHHHHHHHHHHHHHHTS--SSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT---
T ss_pred ----hhHHHHHHhhcCeeE---eeecchhHHHHHHHHHhhhcc--CcchhheeeEEEEcchhhhcCCHHHHhhhhhh---
Confidence 133345555444321 111224444567777777775 5788888899999999999865 46799998
Q ss_pred HHHHHHHHHc-CCChhhHHHHHHHHHHHHHHhcC
Q 039062 839 SKDFLNECLS-SKDHMIKESAEWARLAINKAISV 871 (871)
Q Consensus 839 v~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 871 (871)
..|-++.+.+ -.|+++|+.|..|+..|.++-++
T Consensus 295 l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 295 LLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp THHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 4556665544 48999999999999999998653
No 68
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.01 E-value=1.5e-07 Score=102.29 Aligned_cols=370 Identities=13% Similarity=0.078 Sum_probs=221.9
Q ss_pred CCch-HHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhh
Q 039062 127 KQWP-ELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALS 205 (871)
Q Consensus 127 ~~~~-~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (871)
..|. .-++.|++.+.++++.++..|..+|..++... .+.-..-.....++.++..|. +++..++..|..+|.++..
T Consensus 43 ~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~--s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 43 PNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLD--HPKKEVHLGACGALKNISF 119 (584)
T ss_dssp CCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGG--CSSHHHHHHHHHHHHHHTS
T ss_pred CCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHC--CCCHHHHHHHHHHHHHHHc
Confidence 4664 35788999999999999988999999888643 111000112345688899998 6899999999999999865
Q ss_pred cchhcccChhhHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHHHHHh---HHhhHHhHHHHHHHHHHHh------------
Q 039062 206 FAQANFSNDMERDYIMRVVCEATQS-AELKIRQAAFECLVSISSTY---YEKLAPYMQDIYSITAKAV------------ 269 (871)
Q Consensus 206 ~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~l~~~~~~~~------------ 269 (871)
...............++.+..++.+ .+.+++..+..+|..+.... ......-++.+++++....
T Consensus 120 ~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k 199 (584)
T 3l6x_A 120 GRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCK 199 (584)
T ss_dssp SSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC--------
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccccc
Confidence 3111100000012247777777775 57889999999998887632 1122233444555432110
Q ss_pred --hCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcc--cCCcccccccccH
Q 039062 270 --REDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQ--EEDQDQEEGAWNI 345 (871)
Q Consensus 270 --~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~d~~~~~~~~~~ 345 (871)
...+.+++..|..++..++....+ .+..+.. ...+++.|+..+... ..+.+ ...
T Consensus 200 ~~~~~d~~V~~nAa~~L~NLs~~~~~----------------~R~~i~~-~~Gli~~LV~~L~~~~~~~~~~-----~~~ 257 (584)
T 3l6x_A 200 PRHIEWESVLTNTAGCLRNVSSERSE----------------ARRKLRE-CDGLVDALIFIVQAEIGQKDSD-----SKL 257 (584)
T ss_dssp --CCCCHHHHHHHHHHHHHHTSSCHH----------------HHHHHHH-STTHHHHHHHHHHHHHHTTCCS-----CHH
T ss_pred ccccccHHHHHHHHHHHHHHhcCCHH----------------HHHHHHH-cCCcHHHHHHHHHHhhcccCcc-----HHH
Confidence 123568888899888888653100 0111111 123445555544321 01111 123
Q ss_pred hHHHHHHHHHHHHHc----C--------------------CCcc-----cchHHHHHhhh-cCCChhhHHHHHHHHHHhh
Q 039062 346 AMAGGTCLGLVARTV----G--------------------DDIV-----PLVIPFIEENI-AKPDWRQREAATYAFGSIL 395 (871)
Q Consensus 346 r~~a~~~l~~l~~~~----~--------------------~~~~-----~~l~~~l~~~l-~~~~~~~r~~a~~~l~~l~ 395 (871)
...|..+|..|+... + ..-+ +..++.+...+ .+.++.+++.|+.+|..++
T Consensus 258 ~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ 337 (584)
T 3l6x_A 258 VENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLC 337 (584)
T ss_dssp HHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 333444444443221 0 0001 12234444444 3467899999999999998
Q ss_pred cCCCh--hhhhHHH--HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccCC-
Q 039062 396 EGPSP--DKLLHIV--NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDT- 470 (871)
Q Consensus 396 ~~~~~--~~~~~~l--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~- 470 (871)
.+..+ ......+ ...+|.++..+ .++++.++..++++|+.++.... .....-...+|.|++.|...
T Consensus 338 ag~~~~~~~~~~~v~~~~glp~Lv~LL-~s~~~~v~~~A~~aL~nLs~~~~--------~~~~I~~g~ip~LV~LL~~~~ 408 (584)
T 3l6x_A 338 AGRWTYGRYIRSALRQEKALSAIADLL-TNEHERVVKAASGALRNLAVDAR--------NKELIGKHAIPNLVKNLPGGQ 408 (584)
T ss_dssp SSCSHHHHHHHHHHTSHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCS--------CHHHHHHHHHHHHHHTSSSSS
T ss_pred cCCccccHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhCChh--------HHHHHHhCCHHHHHHHhcCCc
Confidence 76422 1122233 46699999999 99999999999999999987542 22333467899999988742
Q ss_pred --------hHHHHHHHHHHHHHHhhcccCCCCCCCcchH-HHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHh
Q 039062 471 --------PNVAEKACGALYFLAQGYEDVGPSSPLTPFF-QEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRS 536 (871)
Q Consensus 471 --------~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~-~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~ 536 (871)
..+...+|++|.+++..-.+ .-.... ...++.|..++.+.+. ..+++..|..+|..++..
T Consensus 409 ~~~~~~~s~~v~~~a~~tL~NL~a~~~~-----~~~~I~~~g~I~~Lv~LL~s~~~-~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 409 QNSSWNFSEDTVISILNTINEVIAENLE-----AAKKLRETQGIEKLVLINKSGNR-SEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp CSGGGTCCHHHHHHHHHHHHHHHTTCHH-----HHHHHHHTTHHHHHHHHHTCSSS-CHHHHHHHHHHHHHHHTS
T ss_pred ccccccchHHHHHHHHHHHHHHhcCCHH-----HHHHHHHCCChHHHHHHHhCCCC-ChHHHHHHHHHHHHHHcC
Confidence 46788999999998743110 000111 2346666777665321 346778888888888764
No 69
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.96 E-value=2e-07 Score=101.15 Aligned_cols=371 Identities=12% Similarity=0.057 Sum_probs=224.8
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCC---CchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhh
Q 039062 95 TCLLNTLTSTVADARSTSSQVIAKVAGIELPQK---QWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDH 171 (871)
Q Consensus 95 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~---~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 171 (871)
+.+++.|.++++.++..++.++..++...-+.. .-...++.|++++.+++..+++.|..+|..|+....++.-..-.
T Consensus 51 ~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~ 130 (584)
T 3l6x_A 51 PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIK 130 (584)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 457788899999999999999999885321100 01346899999999999999999999999998631011000001
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhh------------------ccCcH
Q 039062 172 VNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEAT------------------QSAEL 233 (871)
Q Consensus 172 ~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l------------------~~~~~ 233 (871)
-...++.++..+.+ ..+..++..|..+|.++........ ......++.+.+++ ...++
T Consensus 131 ~~GaIp~LV~LL~s-~~~~~~~e~aa~aL~nLS~~~~~k~---~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 131 NCDGVPALVRLLRK-ARDMDLTEVITGTLWNLSSHDSIKM---EIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HTTHHHHHHHHHHH-CCSHHHHHHHHHHHHHHTTSGGGHH---HHHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HcCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCCchhhH---HHHhccHHHHHHHHhcccccccccccccccccccccH
Confidence 23456777778874 3678899999999999765321100 11122234444432 12367
Q ss_pred HHHHHHHHHHHHHHHHhHH---hhHH---hHHHHHHHHHHHhh--CCChhHHHHHHHHHHHHHHHHHhhhh---hhcCCC
Q 039062 234 KIRQAAFECLVSISSTYYE---KLAP---YMQDIYSITAKAVR--EDEEPVALQAIEFWSSICDEEIDILE---EYGSDF 302 (871)
Q Consensus 234 ~~~~~a~~~l~~l~~~~~~---~~~~---~~~~l~~~~~~~~~--~~~~~~~~~a~~~~~~l~~~~~~~~~---~~~~~~ 302 (871)
+++..|..+|..+....+. .+.. .++.++.++-..+. +.+......|+..+..++..-..-.. .+....
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 9999999999999864322 2221 12345555444432 34556777777777666542110000 000000
Q ss_pred ---CCCCCCchhhhHHhh-hhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcC---CC---cc--cchHH
Q 039062 303 ---TGNSDIPCFYFIKQA-LPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVG---DD---IV--PLVIP 370 (871)
Q Consensus 303 ---~~~~~~~~~~~~~~~-~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~---~~---~~--~~l~~ 370 (871)
..++......-+..+ -+..++.++..+.... . ..++..|..+|..++..-+ .. .+ ...+|
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~-~-------~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp 358 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESK-T-------PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALS 358 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCC-C-------HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHH
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCC-C-------HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHH
Confidence 000000000111111 1345677777775321 1 2567778888888864221 00 11 24577
Q ss_pred HHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCC--------cHHHHHHHHHHHHHHhhhhc
Q 039062 371 FIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDP--------NNHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 371 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~--------~~~vr~~a~~~l~~~~~~~~ 442 (871)
.+...+.+++..+++.++.+|+.++.+.... ...-...+|.++..| .++ +..++..++++|+++....+
T Consensus 359 ~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~--~~I~~g~ip~LV~LL-~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~ 435 (584)
T 3l6x_A 359 AIADLLTNEHERVVKAASGALRNLAVDARNK--ELIGKHAIPNLVKNL-PGGQQNSSWNFSEDTVISILNTINEVIAENL 435 (584)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHTS-SSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCChhHH--HHHHhCCHHHHHHHh-cCCcccccccchHHHHHHHHHHHHHHhcCCH
Confidence 7888889999999999999999999875311 122356889999999 765 46788999999999875432
Q ss_pred cCCCCCCccchhhHHHHHHHHHHhccC---ChHHHHHHHHHHHHHHh
Q 039062 443 GSTIGTPIITQANCQQIITVLLQSMKD---TPNVAEKACGALYFLAQ 486 (871)
Q Consensus 443 ~~~~~~~~~~~~~~~~il~~l~~~l~d---~~~v~~~a~~~l~~l~~ 486 (871)
. ....-.-...+|.|++.+.+ .+++++.|+++|.++..
T Consensus 436 ~------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 436 E------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp H------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred H------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 1 11111122478888888875 57899999999999874
No 70
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.94 E-value=1.2e-08 Score=101.29 Aligned_cols=231 Identities=16% Similarity=0.167 Sum_probs=161.0
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhH
Q 039062 176 LTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLA 255 (871)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~ 255 (871)
++.+...+. ++++.+|..|+.++.+++....... ........++.+.+.+.+++++++..++.+|..++...+..-.
T Consensus 14 ~~~~~~~L~--s~~~~~~~~a~~~L~~~l~~~~~~~-~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 14 LPQMTQQLN--SDDMQEQLSATRKFSQILSDGNEQI-QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp HHHHHHHHH--SSCSSHHHHHHHHHHHHHHHHHHHH-HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCCchH-HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 345556666 6778899999999987665311110 0011134678889999999999999999999999865444333
Q ss_pred HhHH-HHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhh-hhhhHHHHHHHHhccc
Q 039062 256 PYMQ-DIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQA-LPALVPLLLEILLKQE 333 (871)
Q Consensus 256 ~~~~-~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~l~~~~ 333 (871)
..+. ..++.+...+.+++++++..|+..+..++.... ...... -...+|.++..+..
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-------------------~~~~~~~~~~~i~~L~~lL~~-- 149 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-------------------EQIQAVIDAGALPALVQLLSS-- 149 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-------------------HHHHHHHHTTHHHHHHHGGGC--
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc-------------------hHHHHHHHCCCHHHHHHHHhC--
Confidence 3332 467788888999999999999999988866321 110111 12456777776642
Q ss_pred CCcccccccccHhHHHHHHHHHHHHHcCCC---c-ccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH-H
Q 039062 334 EDQDQEEGAWNIAMAGGTCLGLVARTVGDD---I-VPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV-N 408 (871)
Q Consensus 334 ~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l-~ 408 (871)
++ +.++..|..+|..++...+.. + -...++.+...+.++++.+|..++.+++.++... ++...... .
T Consensus 150 ~~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~ 221 (252)
T 4db8_A 150 PN-------EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEA 221 (252)
T ss_dssp SC-------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHT
T ss_pred CC-------HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHC
Confidence 11 478888888888887533211 1 1345677777888889999999999999999753 33333333 3
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHhh
Q 039062 409 VALSFMLSALTKDPNNHVKDTTAWTLGRIFE 439 (871)
Q Consensus 409 ~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~ 439 (871)
..++.+...+ .++++.+|..|+++|++++.
T Consensus 222 g~i~~L~~ll-~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 222 GALEKLEQLQ-SHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp THHHHHHTTT-TCSSSHHHHTHHHHHHTTC-
T ss_pred CcHHHHHHHh-CCCCHHHHHHHHHHHHHHhc
Confidence 5789999999 99999999999999998764
No 71
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.94 E-value=1.1e-08 Score=108.57 Aligned_cols=324 Identities=11% Similarity=0.081 Sum_probs=199.4
Q ss_pred cccchHHHHHhhhc--------CCChhhHHHHHHHHHHhhcCCChhhhhH--------HH---HHHHHHHHHHccCCCc-
Q 039062 364 IVPLVIPFIEENIA--------KPDWRQREAATYAFGSILEGPSPDKLLH--------IV---NVALSFMLSALTKDPN- 423 (871)
Q Consensus 364 ~~~~l~~~l~~~l~--------~~~~~~r~~a~~~l~~l~~~~~~~~~~~--------~l---~~i~~~l~~~l~~d~~- 423 (871)
.+|.+++++...-. +.+...|..|.+++..|+.+. ++.... .+ ....+.++..+ ..+.
T Consensus 71 ~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~ 148 (458)
T 3nmz_A 71 CLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQ-EAHEP 148 (458)
T ss_dssp CHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTSS
T ss_pred CHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHH-Hhhcc
Confidence 45666666653211 134689999999999999874 233221 11 12223444445 3321
Q ss_pred -H-----HHHH-------HHHHHHHHHhhhhccCCCCCCccchhhH-HHHHHHHHHhcc----------C--ChHHHHHH
Q 039062 424 -N-----HVKD-------TTAWTLGRIFEFLHGSTIGTPIITQANC-QQIITVLLQSMK----------D--TPNVAEKA 477 (871)
Q Consensus 424 -~-----~vr~-------~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~~il~~l~~~l~----------d--~~~v~~~a 477 (871)
. .|+. .|.|+|++++..-. ...... ...++.|+..+. + ++.++..|
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e--------~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~A 220 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE--------HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYA 220 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHH--------HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHH--------HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHH
Confidence 1 1554 89999999975421 111111 246677776663 1 36789999
Q ss_pred HHHHHHHHhhcccCCCCCCCcchH---HHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHH--HHHHHHH
Q 039062 478 CGALYFLAQGYEDVGPSSPLTPFF---QEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMV--LQLVPVI 552 (871)
Q Consensus 478 ~~~l~~l~~~~~~~~~~~~l~~~~---~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l 552 (871)
+++|.+++.+- +.....+ ...++.|+..+.+. +..++..+..+|..+...........+ ...+|.+
T Consensus 221 a~aL~nLa~~~------~~~k~~i~~~~GaIp~LV~LL~s~---~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L 291 (458)
T 3nmz_A 221 GMALTNLTFGD------VANKATLCSMKGCMRALVAQLKSE---SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 291 (458)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHCHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHhCCC------cccHHHHHHcCCcHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence 99999998531 1112222 45688888888865 458899999999998764222222222 3567888
Q ss_pred HHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhH--HHHHHHHHHHHcccCc----chhhh
Q 039062 553 MMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYA--DQIMGLFLRVFACRSA----TVHEE 626 (871)
Q Consensus 553 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~----~~~~~ 626 (871)
++.+... .+ . .++..++.++.+++...... -.... ...++.+..++...+. .+++.
T Consensus 292 V~lLl~s-------~~-~----~v~~~A~~aL~nLs~~~~~n------k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~ 353 (458)
T 3nmz_A 292 MECALEV-------KK-E----STLKSVLSALWNLSAHCTEN------KADICAVDGALAFLVGTLTYRSQTNTLAIIES 353 (458)
T ss_dssp HHHHTTC-------CS-H----HHHHHHHHHHHHHHHHCHHH------HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHH
T ss_pred HHHHhcC-------CC-H----HHHHHHHHHHHHHccCCHHH------HHHHHHhcCcHHHHHHHhcCCCCcchHHHHHH
Confidence 8875331 11 1 24455677777776532111 11121 3578888888887644 38899
Q ss_pred HHHHHHHHHHH---hhhhhhhhh-HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccH-HHHHHHHHHHccC
Q 039062 627 AMLAIGALAYA---AGLDFAKYM-PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYC-DGIMTQLLKDLSS 701 (871)
Q Consensus 627 a~~~l~~l~~~---~~~~~~~~l-~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~ 701 (871)
+..+|..++.. ......... ...+|.++..+.+.+ ..++..|+++|++++....+...... ...++.|++++.+
T Consensus 354 A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s 432 (458)
T 3nmz_A 354 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 432 (458)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-HHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC
Confidence 99999998863 222222222 347888998888654 48999999999999742222211111 4678899999987
Q ss_pred CCCCCcCCchHHHHHHHHHHhhccCh
Q 039062 702 NQLHRSVKPPIFSCFGDIALAIGENF 727 (871)
Q Consensus 702 ~~~~~~v~~~~~~~l~~i~~~~~~~~ 727 (871)
. +..++..|+.++.+++...+.++
T Consensus 433 ~--~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 433 K--HKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp S--SHHHHHHHHHHHHHHHTCCSCC-
T ss_pred C--CHHHHHHHHHHHHHHHcCCHhhh
Confidence 7 67899999999999998766553
No 72
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.89 E-value=5.5e-07 Score=95.49 Aligned_cols=314 Identities=13% Similarity=0.067 Sum_probs=190.9
Q ss_pred HHHHHHHhhcCC------------ChHHHHHHHHHHHHHhhccCCCccchhh----------HHHHHHHHHhhhcCCCCC
Q 039062 132 LIVSLLSNVHQL------------PAHVKQATLETLGYLCEEVSPDVVEQDH----------VNKILTAVVQGMNASEMN 189 (871)
Q Consensus 132 ll~~L~~~l~~~------------~~~~r~~al~~l~~l~~~~~~~~~~~~~----------~~~i~~~l~~~l~~~~~~ 189 (871)
.+|.|++.+... ++..+..|..+|..|...- |+...... .....+.+++.+.+...+
T Consensus 71 ~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 149 (458)
T 3nmz_A 71 CLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149 (458)
T ss_dssp CHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred CHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 455666666542 3578888999999988876 65542111 111223445555532211
Q ss_pred HH-----HHH-------HHHHHHHHhhhcchhcccChhhHHH-----HHHHHHHhhc-----------cCcHHHHHHHHH
Q 039062 190 ND-----VRL-------AATRALYNALSFAQANFSNDMERDY-----IMRVVCEATQ-----------SAELKIRQAAFE 241 (871)
Q Consensus 190 ~~-----vr~-------~al~~l~~~~~~~~~~~~~~~~~~~-----i~~~l~~~l~-----------~~~~~~~~~a~~ 241 (871)
.+ ++. .|+.+|.++... + +.++. .++.+..++. ..++.++..|+.
T Consensus 150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~------e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~ 222 (458)
T 3nmz_A 150 MDQDKNPMPAPVEHQICPAVCVLMKLSFD-E------EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGM 222 (458)
T ss_dssp SCCCSCC--CCCTTTTHHHHHHHHHHTTS-H------HHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred cccccCCccchhhHHHHHHHHHHHHhcCC-H------HHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHH
Confidence 11 555 788888886321 1 12222 3455555552 134678999999
Q ss_pred HHHHHHHHhHHhhHHh--HHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHH-HHhhhhhhcCCCCCCCCCchhhhHHhhh
Q 039062 242 CLVSISSTYYEKLAPY--MQDIYSITAKAVREDEEPVALQAIEFWSSICDE-EIDILEEYGSDFTGNSDIPCFYFIKQAL 318 (871)
Q Consensus 242 ~l~~l~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (871)
+|..++......-... ....++.++..+.+.+++++..|+.++..++.. ..+ ++..+..
T Consensus 223 aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~----------------~k~~I~~-- 284 (458)
T 3nmz_A 223 ALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN----------------SKKTLRE-- 284 (458)
T ss_dssp HHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHH----------------HHHHHHH--
T ss_pred HHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHH----------------HHHHHHH--
Confidence 9999986533211111 235677777788889999999999888887541 000 1111111
Q ss_pred hhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcC---CCc--ccchHHHHHhhhcCCC---h-hhHHHHHH
Q 039062 319 PALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVG---DDI--VPLVIPFIEENIAKPD---W-RQREAATY 389 (871)
Q Consensus 319 ~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~---~~~--~~~l~~~l~~~l~~~~---~-~~r~~a~~ 389 (871)
...+|.|++.|.... + ..++..|..+|..++.... ..+ ....++.+...+.+.+ | .+++.++.
T Consensus 285 ~GaI~~LV~lLl~s~-~-------~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~ 356 (458)
T 3nmz_A 285 VGSVKALMECALEVK-K-------ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGG 356 (458)
T ss_dssp TTHHHHHHHHHTTCC-S-------HHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHH
T ss_pred cCCHHHHHHHHhcCC-C-------HHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 234666666554321 1 2466677788888876321 112 1345566666665432 2 57888899
Q ss_pred HHHHhhc---CCChhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHH
Q 039062 390 AFGSILE---GPSPDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQ 465 (871)
Q Consensus 390 ~l~~l~~---~~~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 465 (871)
+|..++. +. ++...... ...+|.++..+ .+.+..++..|+|+|++++..... ....-.-...+|.|++
T Consensus 357 aL~nLs~~~a~~-~~~~~~i~~~G~i~~Lv~LL-~~~~~~v~~~A~~aL~nLa~~~~~------~~~~i~~~G~I~~Lv~ 428 (458)
T 3nmz_A 357 ILRNVSSLIATN-EDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPK------DQEALWDMGAVSMLKN 428 (458)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHS-SCSCHHHHHHHHHHHHHHHSSCHH------HHHHHHHHTHHHHHHT
T ss_pred HHHHHHhcccCC-HHHHHHHHHcccHHHHHHHH-cCCChHHHHHHHHHHHHHHcCCHH------HHHHHHHCCCHHHHHH
Confidence 9999886 32 23322222 35789999999 999999999999999999853221 1111112357899999
Q ss_pred hccC-ChHHHHHHHHHHHHHHhh
Q 039062 466 SMKD-TPNVAEKACGALYFLAQG 487 (871)
Q Consensus 466 ~l~d-~~~v~~~a~~~l~~l~~~ 487 (871)
.+.. ++++++.|+++|.+++.+
T Consensus 429 LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 429 LIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHhCCCHHHHHHHHHHHHHHHcC
Confidence 8875 789999999999999864
No 73
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.88 E-value=4.5e-07 Score=103.63 Aligned_cols=302 Identities=9% Similarity=0.163 Sum_probs=217.3
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCC--CCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCC-Cccch
Q 039062 93 IKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQ--KQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSP-DVVEQ 169 (871)
Q Consensus 93 i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~--~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~-~~~~~ 169 (871)
....+++.+...+..-+..++..++.+.....+. -.| .++..+...+.+.+.. ++|+.+++.+++.... ..+ .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~-e 90 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV-E 90 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCH-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT-H
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc-c
Confidence 3344666666554444566677777776543221 234 6888888887765444 9999999999977622 123 5
Q ss_pred hhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccC-cHHHHHHHHHHHHHHHH
Q 039062 170 DHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSA-ELKIRQAAFECLVSISS 248 (871)
Q Consensus 170 ~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 248 (871)
.++-.+++.++..+. |....||.+|-.+...++...+.. -...+++.++..+... .|..+..|+.++..+++
T Consensus 91 ~~~~~~~~~~~~~~~--dk~~~v~~aa~~~~~~~~~~~~~~-----a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~ 163 (986)
T 2iw3_A 91 PYIVQLVPAICTNAG--NKDKEIQSVASETLISIVNAVNPV-----AIKALLPHLTNAIVETNKWQEKIAILAAFSAMVD 163 (986)
T ss_dssp HHHHTTHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSCGG-----GHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 666677889999988 899999999999998887654321 1266788888877644 69999999999999999
Q ss_pred HhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHH
Q 039062 249 TYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEI 328 (871)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 328 (871)
..+..+...++++++.+..++-|..+++...|...+..+|..- ...-+...+|.|++.
T Consensus 164 ~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~----------------------~n~d~~~~~~~~~~~ 221 (986)
T 2iw3_A 164 AAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETV----------------------DNKDIERFIPSLIQC 221 (986)
T ss_dssp HSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC----------------------CCTTTGGGHHHHHHH
T ss_pred HhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcC----------------------CCcchhhhHHHHHHH
Confidence 9999999999999999999999999999999999988887631 111123346666666
Q ss_pred HhcccCCcccccccccHhHHHHHHHHHHHHHc-CC----CcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCC-hhh
Q 039062 329 LLKQEEDQDQEEGAWNIAMAGGTCLGLVARTV-GD----DIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPS-PDK 402 (871)
Q Consensus 329 l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~-~~----~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~-~~~ 402 (871)
|...+ . .-+|+..|+... -. ..+..+.|.+...++...-..++-+..++..++.-.. +..
T Consensus 222 ~~~p~----------~----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~ 287 (986)
T 2iw3_A 222 IADPT----------E----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQV 287 (986)
T ss_dssp HHCTT----------H----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred hcChh----------h----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHH
Confidence 66432 1 246677766542 22 2345678999888887666666666778888877643 567
Q ss_pred hhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhh
Q 039062 403 LLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFL 441 (871)
Q Consensus 403 ~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~ 441 (871)
..++++.++|.+.+..+.-.+|++|..+-.++..+....
T Consensus 288 ~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 288 IAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp HHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhh
Confidence 788999999998876634578999988877776665443
No 74
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.84 E-value=4.7e-08 Score=93.76 Aligned_cols=188 Identities=20% Similarity=0.200 Sum_probs=135.1
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHh
Q 039062 174 KILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEK 253 (871)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 253 (871)
..++.+...+. ++++.+|..|+..+..+-. +..++.+.+.+.++++.+|..++..|..+..
T Consensus 19 ~~~~~L~~~L~--~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----- 79 (211)
T ss_dssp GGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----
T ss_pred hHHHHHHHHHc--CCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 34556677777 8999999999999988422 2345566777888999999999999987642
Q ss_pred hHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhccc
Q 039062 254 LAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQE 333 (871)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 333 (871)
+..++.+...+.++++.+|..|+..+..+... ..++.+...+. +
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-----------------------------~~~~~L~~~l~--d 123 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------------------------RAVEPLIKALK--D 123 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------------------------GGHHHHHHHTT--C
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------------------------HHHHHHHHHHh--C
Confidence 12234444577889999999998887665321 12445555442 1
Q ss_pred CCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHH
Q 039062 334 EDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSF 413 (871)
Q Consensus 334 ~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~ 413 (871)
+ ++.+|..|..+|+.+.. +...+.+...+.+++|.+|..++.+++.+.. +..++.
T Consensus 124 ~-------~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~ 178 (211)
T 3ltm_A 124 E-------DWFVRIAAAFALGEIGD-------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAA 178 (211)
T ss_dssp S-------SHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHH
T ss_pred C-------CHHHHHHHHHHHHHcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHH
Confidence 1 15789888888887732 4567777788889999999999999999853 345677
Q ss_pred HHHHccCCCcHHHHHHHHHHHHHHhhhhc
Q 039062 414 MLSALTKDPNNHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 414 l~~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (871)
+...+ +|+++.||..|..+|+++.....
T Consensus 179 L~~~l-~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 179 MEKLA-ETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHH-HHCCHHHHHHHHHHHHC------
T ss_pred HHHHH-hCCCHHHHHHHHHHHHhcCCCCC
Confidence 77888 89999999999999998876553
No 75
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.82 E-value=1.1e-07 Score=90.32 Aligned_cols=187 Identities=19% Similarity=0.182 Sum_probs=137.8
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhH
Q 039062 172 VNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYY 251 (871)
Q Consensus 172 ~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 251 (871)
.+...+.+++.+. ++++.+|..|+.++..+-. +..++.+.+.+.++++.+|..++..|..+...
T Consensus 12 ~~~~~~~~i~~L~--~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-- 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE-- 75 (201)
T ss_dssp CHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--
T ss_pred CCcchHHHHHHhc--CCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH--
Confidence 3455667788888 8999999999999988431 12345666777889999999999999876421
Q ss_pred HhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhc
Q 039062 252 EKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLK 331 (871)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 331 (871)
..++.+...+.++++.+|..|+..+..+... ..++.+...+.
T Consensus 76 --------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------------------------~~~~~L~~~l~- 117 (201)
T 3ltj_A 76 --------RAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------------------------RAVEPLIKALK- 117 (201)
T ss_dssp --------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------------------------GGHHHHHHHTT-
T ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------------------------HHHHHHHHHHc-
Confidence 2234444577889999999999887665321 12444555442
Q ss_pred ccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHH
Q 039062 332 QEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVAL 411 (871)
Q Consensus 332 ~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~ 411 (871)
+++ +.+|..|..+|+.+.. +...+.+...+.+++|.+|..++.+++.+.. +..+
T Consensus 118 -d~~-------~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~ 171 (201)
T 3ltj_A 118 -DED-------WFVRIAAAFALGEIGD-------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVR 171 (201)
T ss_dssp -CSS-------HHHHHHHHHHHHHHTC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHH
T ss_pred -CCC-------HHHHHHHHHHHHHhCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHH
Confidence 111 5789989888887742 4567778888889999999999999999832 2356
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHHHhh
Q 039062 412 SFMLSALTKDPNNHVKDTTAWTLGRIFE 439 (871)
Q Consensus 412 ~~l~~~l~~d~~~~vr~~a~~~l~~~~~ 439 (871)
+.+...+ +|+++.||..+..+|+++..
T Consensus 172 ~~L~~~l-~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 172 AAMEKLA-ETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHH-HHCCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHH-hCCCHHHHHHHHHHHHHHHh
Confidence 6777788 89999999999999988754
No 76
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.81 E-value=3.1e-07 Score=87.94 Aligned_cols=185 Identities=16% Similarity=0.142 Sum_probs=141.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccC
Q 039062 5 VTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (871)
Q Consensus 5 l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~ 84 (871)
+..++..+.+++..+|..|-..|.++.. +..+..|...+.+ .++.+|..|+..|.+.-.
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~---~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~---------------- 79 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD---ERAVEPLIKALKD--EDAWVRRAAADALGQIGD---------------- 79 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTTC--SCHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHcC--CCHHHHHHHHHHHHhhCC----------------
Confidence 5567777889999999999999988765 4666777777775 478999999988866421
Q ss_pred CCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCC
Q 039062 85 LDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSP 164 (871)
Q Consensus 85 ~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~ 164 (871)
+ ...+.|++.|.++++.+|..++.+++.+. .++.++.|...+.++++.+|..++.+|+.+..
T Consensus 80 --~----~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 80 --E----RAVEPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp --G----GGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred --H----HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 1 13356677889999999999999988773 25567888888999999999999999988732
Q ss_pred CccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 039062 165 DVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLV 244 (871)
Q Consensus 165 ~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~ 244 (871)
+..++.+...+. |+++.||..|+.++..+-. +..++.+...++++++.+|..|...|.
T Consensus 142 --------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 142 --------ERAVEPLIKALK--DEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLE 199 (211)
T ss_dssp --------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 123445666776 8899999999999998521 456667777788899999999999999
Q ss_pred HHHHHh
Q 039062 245 SISSTY 250 (871)
Q Consensus 245 ~l~~~~ 250 (871)
.+-...
T Consensus 200 ~~~~~~ 205 (211)
T 3ltm_A 200 THKSFN 205 (211)
T ss_dssp C-----
T ss_pred hcCCCC
Confidence 876553
No 77
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.78 E-value=4.4e-07 Score=86.06 Aligned_cols=181 Identities=16% Similarity=0.147 Sum_probs=141.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccC
Q 039062 5 VTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLS 84 (871)
Q Consensus 5 l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~ 84 (871)
...+++.+.++|..+|..|-..|.++.. +..+..|...+.+ .++.+|..|+..|.+.-.
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~---~~~~~~L~~~l~~--~~~~vr~~a~~~L~~~~~---------------- 74 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGD---ERAVEPLIKALKD--EDAWVRRAAADALGQIGD---------------- 74 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCC---GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCC----------------
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHcC--CCHHHHHHHHHHHHhhCC----------------
Confidence 4577888999999999999999988765 3566677777764 478999999988865321
Q ss_pred CCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCC
Q 039062 85 LDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSP 164 (871)
Q Consensus 85 ~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~ 164 (871)
+ ...+.|...|.++++.+|..++.+++.+. -++.++.|...+.++++.+|..++.+++.+..
T Consensus 75 --~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 --E----RAVEPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp --G----GGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred --H----HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 1 23356677889999999999999998863 24567888888899999999999999988732
Q ss_pred CccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 039062 165 DVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLV 244 (871)
Q Consensus 165 ~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~ 244 (871)
...++.+...+. |+++.||..|+.++..+-. +..++.+...+.++++.+|..+.+.|.
T Consensus 137 --------~~~~~~L~~~l~--d~~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 137 --------ERAVEPLIKALK--DEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp --------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 123445667777 7899999999999998521 456667777778899999999999987
Q ss_pred HH
Q 039062 245 SI 246 (871)
Q Consensus 245 ~l 246 (871)
.+
T Consensus 195 ~l 196 (201)
T 3ltj_A 195 TH 196 (201)
T ss_dssp HC
T ss_pred HH
Confidence 65
No 78
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.73 E-value=2.9e-06 Score=73.12 Aligned_cols=213 Identities=12% Similarity=0.141 Sum_probs=149.2
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchh
Q 039062 130 PELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQA 209 (871)
Q Consensus 130 ~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 209 (871)
.+++..++..+.+.=+.++.+|+.++..+.+.. ++.. +.++..++..++. +....+-....++++.+....+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~-~el~-----epl~~kL~vm~~k-sEaIpltqeIa~a~G~la~i~P- 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTR-EDLY-----EPMLKKLFSLLKK-SEAIPLTQEIAKAFGQMAKEKP- 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-GGGH-----HHHHHHHHHHHHH-CCSHHHHHHHHHHHHHHHHHCH-
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHh-HHHH-----HHHHHHHHHHHhh-cccCchHHHHHHHHhHHHHhCH-
Confidence 678899999998888899999999999999988 5544 4445555555443 5677777777888888765433
Q ss_pred cccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHH
Q 039062 210 NFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICD 289 (871)
Q Consensus 210 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 289 (871)
+....+++.++....-.|++.|......|..++..+|..+...+.++.. .+.+++..-+..|+.|+..+++
T Consensus 103 -----e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~s----mltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 103 -----ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMS----MLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp -----HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH----HTSCSSHHHHHHHHHHHHTCCT
T ss_pred -----HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHH----HhcCCChHHHHHHHHHHHHHhc
Confidence 2346788899998888899999999999999999998887765555544 7778888889999999998877
Q ss_pred HHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchH
Q 039062 290 EEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVI 369 (871)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~ 369 (871)
+. +.|..+++|.++..| .+.| --+|.+|.++|..++...++ +.+.+.
T Consensus 174 n~-------------------~~yv~PfLprL~aLL------~D~d-------eiVRaSaVEtL~~lA~~npk-lRkii~ 220 (253)
T 2db0_A 174 NS-------------------FKYVNPFLPRIINLL------HDGD-------EIVRASAVEALVHLATLNDK-LRKVVI 220 (253)
T ss_dssp TT-------------------HHHHGGGHHHHHGGG------GCSS-------HHHHHHHHHHHHHHHTSCHH-HHHHHH
T ss_pred cC-------------------ccccCcchHHHHHHH------cCcc-------hhhhHHHHHHHHHHHHcCHH-HHHHHH
Confidence 52 456666666555443 1111 16899999999999876643 333333
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHH
Q 039062 370 PFIEENIAKPDWRQREAATYAFGS 393 (871)
Q Consensus 370 ~~l~~~l~~~~~~~r~~a~~~l~~ 393 (871)
..+. .+++.+--+.+..-.+++.
T Consensus 221 ~kl~-e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 221 KRLE-ELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp HHHH-HCCCSCHHHHHHHHHHHHH
T ss_pred HHHH-HhcCcHHHHHHHHHHHHHH
Confidence 3333 3445443333333333333
No 79
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.71 E-value=2.1e-07 Score=89.12 Aligned_cols=195 Identities=15% Similarity=0.081 Sum_probs=140.8
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCC-CC--chHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCcc
Q 039062 91 TQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQ-KQ--WPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVV 167 (871)
Q Consensus 91 ~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~-~~--~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~ 167 (871)
......+..+|.++++.+|..++.+++.++...-.. .. -.+.++.|.+.+.++++.+|..|+.+|+.++... ++..
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~ 89 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 89 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHH
Confidence 345567888899999999999999999998542110 00 0257889999999999999999999999998543 2111
Q ss_pred chhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Q 039062 168 EQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSIS 247 (871)
Q Consensus 168 ~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~ 247 (871)
..-.-...++.++..+. ++++.+|..|+.++.++....+.... .......++.+.+.+.+++++++..++.+|..++
T Consensus 90 ~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 90 QAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHTTCHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHc--CCcHHHHHHHHHHHHHHHcCCHHHHH-HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 00112345678888888 77899999999999998753221110 0011346888889999899999999999999998
Q ss_pred HHhHHhhHHhHH-HHHHHHHHHhhCCChhHHHHHHHHHHHHHH
Q 039062 248 STYYEKLAPYMQ-DIYSITAKAVREDEEPVALQAIEFWSSICD 289 (871)
Q Consensus 248 ~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 289 (871)
...+........ ..++.+...+.+.+++++..|..++..+++
T Consensus 167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 764443332222 467777788889999999999998877753
No 80
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.66 E-value=1.1e-05 Score=69.72 Aligned_cols=214 Identities=11% Similarity=0.188 Sum_probs=152.7
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhh
Q 039062 218 DYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEE 297 (871)
Q Consensus 218 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~ 297 (871)
..++..++..+.++-|-+++.|+..+..++..+++...|.+.+++-.+- ++..-......-..++.++...
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~---ksEaIpltqeIa~a~G~la~i~------ 101 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK---KSEAIPLTQEIAKAFGQMAKEK------ 101 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH---HCCSHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh---hcccCchHHHHHHHHhHHHHhC------
Confidence 4578888888988889999999999999999999999998887766321 2333233233334455554431
Q ss_pred hcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhc
Q 039062 298 YGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIA 377 (871)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~ 377 (871)
+.. +..++|.++....-. |+ ..|..-..+|..++...|. .++.+..-+...++
T Consensus 102 -------------Pe~----v~~vVp~lfanyrig--d~-------kikIn~~yaLeeIaranP~-l~~~v~rdi~smlt 154 (253)
T 2db0_A 102 -------------PEL----VKSMIPVLFANYRIG--DE-------KTKINVSYALEEIAKANPM-LMASIVRDFMSMLS 154 (253)
T ss_dssp -------------HHH----HHHHHHHHHHHSCCC--SH-------HHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHTS
T ss_pred -------------HHH----HHhhHHHHHHHHhcC--Cc-------cceecHHHHHHHHHHhChH-HHHHHHHHHHHHhc
Confidence 222 344677777665432 21 5666677889999887753 34455555666778
Q ss_pred CCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHH
Q 039062 378 KPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQ 457 (871)
Q Consensus 378 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 457 (871)
|++-..|-+++..+++++++. ++.+.| .+|.++..+ .|.+..||..+..+|+.++...+ -+.
T Consensus 155 skd~~Dkl~aLnFi~alGen~-~~yv~P----fLprL~aLL-~D~deiVRaSaVEtL~~lA~~np------------klR 216 (253)
T 2db0_A 155 SKNREDKLTALNFIEAMGENS-FKYVNP----FLPRIINLL-HDGDEIVRASAVEALVHLATLND------------KLR 216 (253)
T ss_dssp CSSHHHHHHHHHHHHTCCTTT-HHHHGG----GHHHHHGGG-GCSSHHHHHHHHHHHHHHHTSCH------------HHH
T ss_pred CCChHHHHHHHHHHHHHhccC-ccccCc----chHHHHHHH-cCcchhhhHHHHHHHHHHHHcCH------------HHH
Confidence 999899999999999998875 454444 577788999 99999999999999999986543 256
Q ss_pred HHHHHHHHhccC-ChHHHHHHHHHHHHHH
Q 039062 458 QIITVLLQSMKD-TPNVAEKACGALYFLA 485 (871)
Q Consensus 458 ~il~~l~~~l~d-~~~v~~~a~~~l~~l~ 485 (871)
+++-.-++.+.| +.-|+.....+|+.+.
T Consensus 217 kii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 217 KVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 777777777877 5666766666676654
No 81
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.64 E-value=1.2e-06 Score=87.29 Aligned_cols=179 Identities=12% Similarity=0.112 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHH-hccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchH-
Q 039062 425 HVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQ-SMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFF- 501 (871)
Q Consensus 425 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~-~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~- 501 (871)
.-|..|+..|..+++.... ...-.-...+|.++. .|.. ++.|+..|+++|.+++.+-. .....+
T Consensus 55 e~k~~Al~~L~~lv~~~dn-------a~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~------~~~~~vv 121 (296)
T 1xqr_A 55 QEREGALELLADLCENMDN-------AADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA------AIQEQVL 121 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHH-------HHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhh-------HHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH------HHHHHHH
Confidence 3566777777777765431 111111246788888 8876 78999999999999986421 111111
Q ss_pred -HHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHH
Q 039062 502 -QEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMV-LQLVPVIMMELHKTLEGQKLSSDEREKQGELQGL 579 (871)
Q Consensus 502 -~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 579 (871)
...++.|+.++.+.. +..+|..|+.+|+.++...+.....+. ...+|.+...+... + ..++..
T Consensus 122 ~~g~l~~Ll~LL~~~~--~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~---------d----~~v~~~ 186 (296)
T 1xqr_A 122 GLGALRKLLRLLDRDA--CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ---------V----QKLKVK 186 (296)
T ss_dssp HTTHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS---------C----HHHHHH
T ss_pred HCCCHHHHHHHHccCC--CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC---------C----HHHHHH
Confidence 145667777776532 357899999999999987654333333 35788888887542 1 247778
Q ss_pred HHHHHHHHHHHhCCCCCchhhhhhh-H-HHHHHHHHHHHcccCcchhhhHHHHHHHHHHHh
Q 039062 580 LCGCLQVIIQKLGSSEPTKYVFMQY-A-DQIMGLFLRVFACRSATVHEEAMLAIGALAYAA 638 (871)
Q Consensus 580 ~~~~l~~l~~~~~~~~~~~~~~~~~-~-~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 638 (871)
++++++.++.. ..+ .... . ..+++.++.+|.+++..+++.++.+++.++...
T Consensus 187 A~~aLs~L~~~-~~~------~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 187 SAFLLQNLLVG-HPE------HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHHHH-CGG------GHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC-ChH------HHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 99999999876 222 2222 2 368899999999999999999999999998763
No 82
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.60 E-value=7e-07 Score=85.43 Aligned_cols=192 Identities=15% Similarity=0.159 Sum_probs=137.0
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhh
Q 039062 218 DYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQ-DIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILE 296 (871)
Q Consensus 218 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~ 296 (871)
+...+.+..++.+++++++..|+.+|..+....+......+. ..++.+...+.+.+++++..|+..+..++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---- 86 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN---- 86 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH----
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc----
Confidence 345667788888999999999999999998654443333333 577788888999999999999999988874211
Q ss_pred hhcCCCCCCCCCchhhhHHhhh-hhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCC---c-ccchHHH
Q 039062 297 EYGSDFTGNSDIPCFYFIKQAL-PALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDD---I-VPLVIPF 371 (871)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~-~~~l~~~ 371 (871)
......+ ...+|.++..+... + ..++..|..+|..++...+.. + -...++.
T Consensus 87 ---------------~~~~~i~~~g~i~~L~~lL~~~--~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 142 (210)
T 4db6_A 87 ---------------EQIQAVIDAGALPALVQLLSSP--N-------EQILQEALWALSNIASGGNEQIQAVIDAGALPA 142 (210)
T ss_dssp ---------------HHHHHHHHTTCHHHHHHHTTCS--C-------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred ---------------HHHHHHHHCCCHHHHHHHHcCC--c-------HHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHH
Confidence 1111111 24567777766432 1 367888888888887532111 1 1346677
Q ss_pred HHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhh
Q 039062 372 IEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIFE 439 (871)
Q Consensus 372 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~ 439 (871)
+...+.+++..+|..++.+++.++... ++...... ...++.+...+ .++++.+|..|+++|+++++
T Consensus 143 L~~ll~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 143 LVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQ-SHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCC-cHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHhc
Confidence 777888889999999999999999864 23322222 36789999999 99999999999999998864
No 83
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.53 E-value=4.8e-07 Score=92.90 Aligned_cols=265 Identities=11% Similarity=0.067 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhcc----------C--ChHHHHHHHHHHHHHHhhcccCC
Q 039062 425 HVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMK----------D--TPNVAEKACGALYFLAQGYEDVG 492 (871)
Q Consensus 425 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~----------d--~~~v~~~a~~~l~~l~~~~~~~~ 492 (871)
.....|+|+|++++..-. ....-.-...++.|+..+. + ++.++..|+++|.+++.+-
T Consensus 47 ~~~~~A~~aL~nls~d~e-------~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~---- 115 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEE-------HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD---- 115 (354)
T ss_dssp GTHHHHHHHHHHHHTSHH-------HHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSC----
T ss_pred HHHHHHHHHHHHHcCCHH-------HHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCC----
Confidence 445577888888876531 1011111135566666552 1 3678999999999997431
Q ss_pred CCCCCcchH---HHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHHHHHhhhccCCCh
Q 039062 493 PSSPLTPFF---QEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMV--LQLVPVIMMELHKTLEGQKLSS 567 (871)
Q Consensus 493 ~~~~l~~~~---~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~~~~ 567 (871)
+.....+ ...++.|+..+.+. +..+++.+..+|..+...........+ ...+|.+++.+... .
T Consensus 116 --~~~k~~i~~~~GaIp~LV~LL~s~---~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~-------~ 183 (354)
T 3nmw_A 116 --VANKATLCSMKGCMRALVAQLKSE---SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV-------K 183 (354)
T ss_dssp --HHHHHHHHHCHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC-------C
T ss_pred --HHHHHHHHHcCCcHHHHHHHHCCC---CHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC-------C
Confidence 1112222 35688888888866 458999999999999765222222222 35678888875432 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhH--HHHHHHHHHHHcccCc----chhhhHHHHHHHHHHH--hh
Q 039062 568 DEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYA--DQIMGLFLRVFACRSA----TVHEEAMLAIGALAYA--AG 639 (871)
Q Consensus 568 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~----~~~~~a~~~l~~l~~~--~~ 639 (871)
+ . .++..++.++.+++...... -.... ...++.+..++...+. .+++.+..+|..++.. ..
T Consensus 184 ~-~----~~~~~A~~aL~nLs~~~~~n------k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~ 252 (354)
T 3nmw_A 184 K-E----STLKSVLSALWNLSAHCTEN------KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 252 (354)
T ss_dssp C-H----HHHHHHHHHHHHHHTTCHHH------HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred C-H----HHHHHHHHHHHHHHccChhh------hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC
Confidence 1 1 24445666776665411100 11121 3578888888887544 3889999999998863 12
Q ss_pred hhhhhhh--HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccH-HHHHHHHHHHccCCCCCCcCCchHHHHH
Q 039062 640 LDFAKYM--PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYC-DGIMTQLLKDLSSNQLHRSVKPPIFSCF 716 (871)
Q Consensus 640 ~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~v~~~~~~~l 716 (871)
+.....+ ...+|.++..+.+. +..++..|+++|.+++....+...... ...++.|++++.+. +..+|..++.++
T Consensus 253 ~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~--~~~i~~~A~~aL 329 (354)
T 3nmw_A 253 EDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK--HKMIAMGSAAAL 329 (354)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS--SHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHH
Confidence 2222222 34788888888865 448999999999999742222111111 36688899999877 678999999999
Q ss_pred HHHHHhhccC
Q 039062 717 GDIALAIGEN 726 (871)
Q Consensus 717 ~~i~~~~~~~ 726 (871)
..++...+..
T Consensus 330 ~nL~~~~~~~ 339 (354)
T 3nmw_A 330 RNLMANRPAK 339 (354)
T ss_dssp HHHHTTCCGG
T ss_pred HHHHcCCHHH
Confidence 9999876654
No 84
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.50 E-value=4.5e-05 Score=88.71 Aligned_cols=746 Identities=10% Similarity=0.090 Sum_probs=349.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHhCC-CCChhHHHHHHHHH-H-cccccchhhhHHHH
Q 039062 5 VTQVLLNAQSIDGTVRKHAEESLKQFQEQ---NLPSFLLSLSGELAND-DKPVDSRKLAGLIL-K-NALDAKEQHRKFEL 78 (871)
Q Consensus 5 l~~~l~~~~s~~~~~r~~A~~~L~~~~~~---~~~~~~~~l~~il~~~-~~~~~~r~~a~~~l-k-~~i~~~~~~~~~~~ 78 (871)
+..+++-..|.=+++|+.|+..|...-.. ....++..+++.|... .....-|.-+++.+ . +.+.+ ..
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~-------~~ 207 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHR-------KL 207 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHH-------HG
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhh-------HH
Confidence 44555666778889999999999876654 1234444555555431 01223333444332 1 11110 01
Q ss_pred hhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 039062 79 VQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYL 158 (871)
Q Consensus 79 ~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l 158 (871)
...| .....+-..|+++...+.+.|.+.+..+...+.....+...+..+-..+...+..+++.+ ..+.......
T Consensus 208 ~~d~-----~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i-~~~~~~~~~~ 281 (997)
T 1vsy_5 208 MTDY-----KDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTI-NLQVEAVKLA 281 (997)
T ss_dssp GGCH-----HHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSST-TSHHHHHHHH
T ss_pred hcCh-----HHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHH-HHHHHHHHHH
Confidence 1223 345566677888877777888887777766665543211222110011112222222111 1122222211
Q ss_pred hhccCCCccchhhHHHHHHHHHhhhcCCCCC--HHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHH
Q 039062 159 CEEVSPDVVEQDHVNKILTAVVQGMNASEMN--NDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIR 236 (871)
Q Consensus 159 ~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~--~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 236 (871)
.+.. .+.. .+....+...++...++ +.. +.....++..+.++.......+ -+.++..+.+.+.++.+.+|
T Consensus 282 ~~~~-r~~~-~~~~~~L~~~l~~~~~~-~~h~~Wk~~~~~~~~l~~l~~r~d~~~-----~~~~v~~~~~~l~~dhp~~R 353 (997)
T 1vsy_5 282 KKKK-REYY-LSLLVDLQDKLLDKLDN-EKDMGWKIRMFILRFVTQIQSNLESKP-----DKRAVFSIISQISTKHPEII 353 (997)
T ss_dssp TTHH-HHHH-HHHHHHHHHHHHHHHHS-STTCCSCHHHHHHHHHHHHTCCSSCCC-----CHHHHHHHHGGGGGCCHHHH
T ss_pred HHHH-HHHH-HHHHHHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHhhcCCCHHHH
Confidence 1110 0001 23344555555666532 566 8888888888666553322111 16678888899999999999
Q ss_pred HHHHHHHHHHHHHh-HHhhHHh-HHHHHHHHHHHhhCCCh-hHHH------HHHHHHHHHHHH-HH-h-hhh-h-hcC--
Q 039062 237 QAAFECLVSISSTY-YEKLAPY-MQDIYSITAKAVREDEE-PVAL------QAIEFWSSICDE-EI-D-ILE-E-YGS-- 300 (871)
Q Consensus 237 ~~a~~~l~~l~~~~-~~~~~~~-~~~l~~~~~~~~~~~~~-~~~~------~a~~~~~~l~~~-~~-~-~~~-~-~~~-- 300 (871)
..|..++..++... +....++ ...+.. . ...+ .++. ...+.|..-.+. +. . ..+ + +.+
T Consensus 354 ~~a~~~l~~il~~~k~~~~~~~d~~~~~~----~--~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~yfid~~~~~Gwl 427 (997)
T 1vsy_5 354 HLVVKSLLSTCNKIISLSDYEYDITRAYK----N--EFNPSFVEILDTSTTSFPKTFTEEMNNFDNPKYFIDLRAYVGWL 427 (997)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTTCGGGGSS----S--SCCCTTEEEEESCSTTTHHHHHHHHSCCSSCCCBCCSCCCSBTT
T ss_pred HHHHHHHHHHHHHHHhhhcCCCcHHHhhc----c--ccCCCCceecCCCCccHHHHHHHHHhcccCCccceeCCCCCeEe
Confidence 99999998888652 1111111 000000 0 0000 0000 011112110000 00 0 000 0 000
Q ss_pred -------CCCCC-CCCc---hhhhHHhhh-----hhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHH----HHc
Q 039062 301 -------DFTGN-SDIP---CFYFIKQAL-----PALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVA----RTV 360 (871)
Q Consensus 301 -------~~~~~-~~~~---~~~~~~~~~-----~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~----~~~ 360 (871)
...+. +.+. ....+...+ +..+..+...+.. |+ ++.+.|+.. -...+..+. ..+
T Consensus 428 ~Wp~~~~vy~p~~~~l~~~~~e~~i~~~f~~~~~~~~~~~l~~~l~q--e~--~~~~~F~~~--~v~l~k~lf~l~~rn~ 501 (997)
T 1vsy_5 428 CWGRLMYVMSPKALKLNLRENELEVLKTAGHLLTREFLRDVTMNLVQ--DN--ETRGVFSSG--NVSFFSLVILLISSGF 501 (997)
T ss_dssp BCCSEEEEECTTCCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TT--TTTCCCCHH--HHHHHHHHHHHHTTTT
T ss_pred eeCCceeEeCCCCCCCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHh--hc--cccCccccc--hHHHHHHHHHHHhccc
Confidence 00000 1000 000001111 2233334444432 11 122334443 234444444 456
Q ss_pred CCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCC---hhhhhHHHHHHHHHHHHHccC-CCcHHH---HHHHHHH
Q 039062 361 GDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPS---PDKLLHIVNVALSFMLSALTK-DPNNHV---KDTTAWT 433 (871)
Q Consensus 361 ~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~i~~~l~~~l~~-d~~~~v---r~~a~~~ 433 (871)
|+..++.+.+.+.....+.+-....+|+.+++.+..+.. .+.....-.-+.|.+...+ . +-+++. -..+++.
T Consensus 502 ~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l-~~~lt~et~~~W~~~i~~ 580 (997)
T 1vsy_5 502 CELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCL-DYELNHDAFEIWSTLAWW 580 (997)
T ss_dssp CCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHH-SSCCCTTHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH-hccCCchhHHHHHHHHHH
Confidence 899999999999998888887888888999999988742 2233333344555555555 4 344432 2333333
Q ss_pred HHHHhhhhccCCCCCCccchhhHHHHHHHHHH--hc---c-CChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHH
Q 039062 434 LGRIFEFLHGSTIGTPIITQANCQQIITVLLQ--SM---K-DTPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQS 507 (871)
Q Consensus 434 l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~--~l---~-d~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~ 507 (871)
+.... .+.-+..++..|.. .. . ++.-........|..+....+-.. + ....++..
T Consensus 581 ---~~~~~----------DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~-~-----~~~~~l~~ 641 (997)
T 1vsy_5 581 ---LPAVV----------DLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRA-P-----DVGKLFDE 641 (997)
T ss_dssp ---HHHHS----------CGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSS-C-----CCHHHHHH
T ss_pred ---HhcCC----------ChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccc-c-----cHHHHHHH
Confidence 11111 23344566666622 11 1 111111111223333322221111 1 13444544
Q ss_pred HHHhhccCChhhhhHHHHHHHHHHHHHHhcC-C---Cc---------------------HHHHHHHHHHHHHHHHHhhhc
Q 039062 508 LLTVTHREDAGESRLRTAAYETLNEVVRSST-D---ET---------------------APMVLQLVPVIMMELHKTLEG 562 (871)
Q Consensus 508 l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~-~---~~---------------------~~~~~~ll~~l~~~l~~~~~~ 562 (871)
++ +.++ ...+|++....++.+....- + .. .+.+...++.+++.+......
T Consensus 642 ~~--l~h~---y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~ 716 (997)
T 1vsy_5 642 LV--FDHP---YDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDS 716 (997)
T ss_dssp CC--SCCS---CHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGT
T ss_pred HH--hCCC---hHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhc
Confidence 44 4443 45789888888887776541 0 00 122222222223333221100
Q ss_pred -cCCChh--hHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHH-HHHHHHHHHcccCc-chhhh-HHHHHHHHHH
Q 039062 563 -QKLSSD--EREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQ-IMGLFLRVFACRSA-TVHEE-AMLAIGALAY 636 (871)
Q Consensus 563 -~~~~~~--~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-i~~~l~~~l~~~~~-~~~~~-a~~~l~~l~~ 636 (871)
...+.. .+..+... +-..+.-+...++.. ....+.+++.. ++|.++++.+..+. ++... +..++..++.
T Consensus 717 ~~~~~~~~~~~s~y~~~---~kTvl~wl~~~l~~~--~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~ 791 (997)
T 1vsy_5 717 VVGLNPQQFIKTDYFYR---TSTIFYWIKEMARGP--NKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGY 791 (997)
T ss_dssp TSSCCSTTTTTSHHHHH---HHHHHHHHHHHSSGG--GHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSS
T ss_pred ccccCccccchHHHHHH---HHHHHHHHHHHhcCC--CccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhc
Confidence 000000 00111111 111222222333322 01123344444 56666655544433 34444 4444444431
Q ss_pred HhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhccc-ccHHHHHHHHHHHccCCCCC-CcCCchHHH
Q 039062 637 AAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKIL-PYCDGIMTQLLKDLSSNQLH-RSVKPPIFS 714 (871)
Q Consensus 637 ~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~-~~v~~~~~~ 714 (871)
.. --.++++.++..+.+.......| .|..++..+..+.-.---.+. .....+.+.++..|.++ . .+||+.|..
T Consensus 792 ~~--~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~--q~~EVRe~Aa~ 866 (997)
T 1vsy_5 792 MP--IRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNE--QFVEVRVRAAS 866 (997)
T ss_dssp SC--CCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCS--SCHHHHHHHHH
T ss_pred CC--CCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCC--ccHHHHHHHHH
Confidence 11 11235566777776666545678 999888888776543221111 12257788888888888 6 889999999
Q ss_pred HHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhH--HHHHHHHHHHHHHHHHHHhhhccCCccccccccchHH
Q 039062 715 CFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDM--TEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPH 792 (871)
Q Consensus 715 ~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~--~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 792 (871)
+|+.+..+.+. ....+.++..+.+.+..... .+..- ......-|-+++-.+++++.+..-. . -.-+|+|.
T Consensus 867 tLsgll~c~~~--~~~~~~li~~f~~~~~~~~~---~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~-v--P~P~w~P~ 938 (997)
T 1vsy_5 867 ILSDIVHNWKE--EQPLLSLIERFAKGLDVNKY---TSKERQKLSKTDIKIHGNVLGLGAIISAFPYV-F--PLPPWIPK 938 (997)
T ss_dssp HHHHHHHSCCS--HHHHHHHHHHHTTSSTTTSS---CHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCC-S--SCCTHHHH
T ss_pred HHHHHHHcCCc--hhhHHHHHHHHHHHHhhccc---ccccccccchHHHHHHHHHHHHHHHHhhCCCC-C--CCCcccHH
Confidence 99999876512 11122233322222211000 00000 0001234567777888888886433 0 01357777
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccc
Q 039062 793 ILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNA 829 (871)
Q Consensus 793 i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~ 829 (871)
++..+.....++ ..++.++=.++++.=++=.+.+
T Consensus 939 ~l~~La~~~~~~---~~i~~tvk~tlseFkrTH~D~W 972 (997)
T 1vsy_5 939 NLSNLSSWARTS---GMTGNAAKNTISEFKKVRADTW 972 (997)
T ss_dssp HHHHHHTTSSSC---SSHHHHTHHHHHHHHHHTSTTH
T ss_pred HHHHHHHHhCCC---CchHHHHHHHHHHHHhccchhH
Confidence 776666665552 3388888888888777655444
No 85
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.48 E-value=1.3e-06 Score=88.28 Aligned_cols=317 Identities=13% Similarity=0.129 Sum_probs=170.2
Q ss_pred HHHHHHHHHHhhcCCc---hHHHHHHHHHHHHHHhhh-cCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCC
Q 039062 90 KTQIKTCLLNTLTSTV---ADARSTSSQVIAKVAGIE-LPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPD 165 (871)
Q Consensus 90 ~~~i~~~ll~~l~~~~---~~vr~~~a~~l~~i~~~~-~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 165 (871)
+..+.+. .+.+.++. ...|.....++..+...+ +|+.....++..+..++++++...|+-....+..+...- .+
T Consensus 24 k~~v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e 101 (355)
T 3tjz_B 24 KSAVLQE-ARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-ED 101 (355)
T ss_dssp HHHHHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SC
T ss_pred HHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HH
Confidence 4444444 46787764 233445666666555432 222234567788888999999988887777776665542 22
Q ss_pred ccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 039062 166 VVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVS 245 (871)
Q Consensus 166 ~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~ 245 (871)
. + -.++.+.+-++ ++++-+|..|+++++.+.. .+..+.+.+.+.+++.+.++.+|+.|+-+...
T Consensus 102 ~-----i-Lv~Nsl~kDl~--~~N~~iR~lALRtL~~I~~--------~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~k 165 (355)
T 3tjz_B 102 V-----I-IVTSSLTKDMT--GKEDSYRGPAVRALCQITD--------STMLQAIERYMKQAIVDKVPSVSSSALVSSLH 165 (355)
T ss_dssp G-----G-GGHHHHHHHHH--SSCHHHHHHHHHHHHHHCC--------TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred H-----H-HHHHHHHhhcC--CCcHhHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 2 2 34566777777 8999999999999999653 12346788888999999999999999999999
Q ss_pred HHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHH
Q 039062 246 ISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLL 325 (871)
Q Consensus 246 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 325 (871)
+....|+....+++.+-+ .+.+.++.+...|+.++..+.+.. +..+..+++.+
T Consensus 166 L~~~~pe~v~~~~~~l~~----ll~d~n~~V~~~Al~lL~ei~~~d-----------------------~~a~~kLv~~l 218 (355)
T 3tjz_B 166 LLKCSFDVVKRWVNEAQE----AASSDNIMVQYHALGLLYHVRKND-----------------------RLAVSKMISKF 218 (355)
T ss_dssp HTTTCHHHHHTTHHHHHH----HTTCSSHHHHHHHHHHHHHHHTTC-----------------------HHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHH----HhcCCCccHHHHHHHHHHHHHhhc-----------------------hHHHHHHHHHH
Confidence 998888877665555444 677888888888888877775421 11222233332
Q ss_pred HHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCC---CcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhh
Q 039062 326 LEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGD---DIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDK 402 (871)
Q Consensus 326 ~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~ 402 (871)
....- ...|... ..+..+....++ ..-..+.+.+...+++.+..+.+.|+.++-.+.... ..
T Consensus 219 ----~~~~l-----~~~~~q~----~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~-~~- 283 (355)
T 3tjz_B 219 ----TRHGL-----KSPFAYC----MMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS-AK- 283 (355)
T ss_dssp ----HSSCC-----SCHHHHH----HHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC---------
T ss_pred ----hcCCC-----cChHHHH----HHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-HH-
Confidence 11100 0124332 223322222211 233567778888888888888888888887765521 11
Q ss_pred hhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHH
Q 039062 403 LLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGAL 481 (871)
Q Consensus 403 ~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l 481 (871)
.+...++.+...+ ..+++.+|+.|+..|..+....++ .+...-..+..++.| +..++..|..+|
T Consensus 284 ---~~~~a~~~L~~fL-ss~d~niryvaLr~L~~l~~~~P~-----------~v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 284 ---ELAPAVSVLQLFC-SSPKAALRYAAVRTLNKVAMKHPS-----------AVTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp -------CCCTHHHHH-HSSSSSSHHHHHHCC------------------------------------------------
T ss_pred ---HHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHCcH-----------HHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 1223344555566 778889999999999888876642 233444555566666 445555554443
No 86
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.46 E-value=3.7e-06 Score=83.77 Aligned_cols=210 Identities=11% Similarity=0.060 Sum_probs=136.9
Q ss_pred HHHHHHHHhh--ChHHHHHHHHHHHhCC----------CCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHH
Q 039062 24 EESLKQFQEQ--NLPSFLLSLSGELAND----------DKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKT 91 (871)
Q Consensus 24 ~~~L~~~~~~--~~~~~~~~l~~il~~~----------~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~ 91 (871)
-.+|.++-.. +++..+...+.++.++ +.+.+-|..|+-.|.+.+..... ...+. +.
T Consensus 13 ~~~~~~~~~~~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dn------a~~~~------~~ 80 (296)
T 1xqr_A 13 LVPRGSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDN------AADFC------QL 80 (296)
T ss_dssp -------CCSCHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHH------HHHHH------HT
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhh------HHHHH------Hc
Confidence 3445444332 2256677777777764 22335777788788777653110 11111 11
Q ss_pred HHHHHHHH-hhcCCchHHHHHHHHHHHHHHhhhcCCCCc----hHHHHHHHHhhcC-CChHHHHHHHHHHHHHhhccCCC
Q 039062 92 QIKTCLLN-TLTSTVADARSTSSQVIAKVAGIELPQKQW----PELIVSLLSNVHQ-LPAHVKQATLETLGYLCEEVSPD 165 (871)
Q Consensus 92 ~i~~~ll~-~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~----~~ll~~L~~~l~~-~~~~~r~~al~~l~~l~~~~~~~ 165 (871)
...+.++. +|.++++.+|..++.+|+.++... |...+ .+.++.|++++.+ ++..+|..|+.+|+.++... +.
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n-~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~-~~ 158 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ-EA 158 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTC-HH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCC-cH
Confidence 23356778 999999999999999999998643 10011 2467888888875 47889999999999998765 32
Q ss_pred ccchhh-HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 039062 166 VVEQDH-VNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLV 244 (871)
Q Consensus 166 ~~~~~~-~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~ 244 (871)
.. +.. -...++.+...+. +++..++..|+.+++++....+.. ........+++.+..++.+++++++..++.++.
T Consensus 159 ~~-~~~~~~ggi~~L~~lL~--~~d~~v~~~A~~aLs~L~~~~~~~-~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~ 234 (296)
T 1xqr_A 159 GL-LQFLRLDGFSVLMRAMQ--QQVQKLKVKSAFLLQNLLVGHPEH-KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALC 234 (296)
T ss_dssp HH-HHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHH
T ss_pred HH-HHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCChHH-HHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHH
Confidence 21 111 1356788888888 689999999999999987542211 000011346788888999999999999999999
Q ss_pred HHHHHhH
Q 039062 245 SISSTYY 251 (871)
Q Consensus 245 ~l~~~~~ 251 (871)
.++...+
T Consensus 235 ~l~~~~~ 241 (296)
T 1xqr_A 235 SLVTDFP 241 (296)
T ss_dssp HHHTTCH
T ss_pred HHHhCCh
Confidence 9987643
No 87
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.45 E-value=0.00012 Score=82.81 Aligned_cols=301 Identities=14% Similarity=0.054 Sum_probs=175.2
Q ss_pred CCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCC--------hHHHHHHHHHHHHHhhccCCCccchhhHHH
Q 039062 103 STVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLP--------AHVKQATLETLGYLCEEVSPDVVEQDHVNK 174 (871)
Q Consensus 103 ~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~--------~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 174 (871)
+.++.+|.-+...++.+.... ..+.+..|...+.+++ +.+|.+|...|+.+.-.. .-+.
T Consensus 406 s~~~~ik~GAllaLGli~ag~-----~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS--------~~ee 472 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGF-----GRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS--------ANIE 472 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTT-----THHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC--------CCHH
T ss_pred CCcHHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC--------CCHH
Confidence 345678888887887775432 1245666666665544 568888888888764332 1124
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhh
Q 039062 175 ILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKL 254 (871)
Q Consensus 175 i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~ 254 (871)
++..|.+.+. +.+..+|..|.-+++.+.. +.. .......+++.+. .+.+.++|..+...|+-+.-..++..
T Consensus 473 v~e~L~~~L~--dd~~~~~~~AalALGli~v--GTg--n~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~~g~~e~~ 543 (963)
T 4ady_A 473 VYEALKEVLY--NDSATSGEAAALGMGLCML--GTG--KPEAIHDMFTYSQ---ETQHGNITRGLAVGLALINYGRQELA 543 (963)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHHHHHHT--TCC--CHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCGGGG
T ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhhhhc--ccC--CHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhhCCChHHH
Confidence 4455566666 5666777777777776432 111 0111123333332 34567888888888886643333332
Q ss_pred HHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccC
Q 039062 255 APYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEE 334 (871)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 334 (871)
. .+++.+ ..+.++.+|..++..++.-+-. .| -... +..|+..+....+
T Consensus 544 ~----~li~~L---~~~~dp~vRygaa~alglAyaG------------TG---------n~~a----Iq~LL~~~~~d~~ 591 (963)
T 4ady_A 544 D----DLITKM---LASDESLLRYGGAFTIALAYAG------------TG---------NNSA----VKRLLHVAVSDSN 591 (963)
T ss_dssp H----HHHHHH---HHCSCHHHHHHHHHHHHHHTTT------------SC---------CHHH----HHHHHHHHHHCSC
T ss_pred H----HHHHHH---HhCCCHHHHHHHHHHHHHHhcC------------CC---------CHHH----HHHHHHHhccCCc
Confidence 2 333321 1356777777665544321110 00 0112 2333333332111
Q ss_pred CcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHH
Q 039062 335 DQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFM 414 (871)
Q Consensus 335 d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l 414 (871)
..+|.+|..+|+.+...-+ +..+ ..+.....+.+|.+|+++.+++|.+..+.. . +.++..+
T Consensus 592 --------d~VRraAViaLGlI~~g~~-e~v~---rlv~~L~~~~d~~VR~gAalALGli~aGn~-~------~~aid~L 652 (963)
T 4ady_A 592 --------DDVRRAAVIALGFVLLRDY-TTVP---RIVQLLSKSHNAHVRCGTAFALGIACAGKG-L------QSAIDVL 652 (963)
T ss_dssp --------HHHHHHHHHHHHHHTSSSC-SSHH---HHTTTGGGCSCHHHHHHHHHHHHHHTSSSC-C------HHHHHHH
T ss_pred --------HHHHHHHHHHHHhhccCCH-HHHH---HHHHHHHhcCCHHHHHHHHHHHHHhccCCC-c------HHHHHHH
Confidence 1478888777776543322 2222 222334457889999999999999987643 1 3456666
Q ss_pred HHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC---ChHHHHHHHHHHHHH
Q 039062 415 LSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD---TPNVAEKACGALYFL 484 (871)
Q Consensus 415 ~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d---~~~v~~~a~~~l~~l 484 (871)
.... .|++..||..|+.+||.++.... ......+..++..|.+...+ ++..+-.++.+.+-+
T Consensus 653 ~~L~-~D~d~~Vrq~Ai~ALG~Ig~gtn-------na~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 653 DPLT-KDPVDFVRQAAMIALSMILIQQT-------EKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HHHH-TCSSHHHHHHHHHHHHHHSTTCC-------TTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHHc-cCCCHHHHHHHHHHHHHHhcCCc-------cccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 7778 99999999999999999886543 22234677888888887765 455666666666554
No 88
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.43 E-value=8.5e-06 Score=78.11 Aligned_cols=183 Identities=16% Similarity=0.174 Sum_probs=135.0
Q ss_pred hhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCC
Q 039062 227 ATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNS 306 (871)
Q Consensus 227 ~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~ 306 (871)
.+-+.|.+.+..+++.|...++..+..+...++-++..+.-.+.+.+..+...+++++..+...-.+. +|
T Consensus 54 ~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~--~y-------- 123 (266)
T 2of3_A 54 QLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT--ET-------- 123 (266)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT--TC--------
T ss_pred HhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc--cc--------
Confidence 33456888899999999998888777777777777887766666888899999999988876642110 11
Q ss_pred CCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHH
Q 039062 307 DIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREA 386 (871)
Q Consensus 307 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~ 386 (871)
.+...-...++|.+++.+.... -.+|..+..++..+...++. ..+++++.+.+.+.+|+.|..
T Consensus 124 -----~~~~~ea~~~lP~LveKlGd~k---------~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e 186 (266)
T 2of3_A 124 -----PMSQEEVSAFVPYLLLKTGEAK---------DNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSE 186 (266)
T ss_dssp -----CCCHHHHHHHHHHHHHGGGCSS---------HHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHH
T ss_pred -----cchHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHH
Confidence 1222223456788877664221 16898899999888887653 246777777889999999999
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHH---HHHHHHccCCCcHHHHHHHHHHHHHHhhhhc
Q 039062 387 ATYAFGSILEGPSPDKLLHIVNVAL---SFMLSALTKDPNNHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 387 a~~~l~~l~~~~~~~~~~~~l~~i~---~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (871)
.+..++.+.+..+.. . ...+ |.+...+ .|++..||.+|+.++..+....+
T Consensus 187 ~l~~l~~li~~~G~~-~----~~~l~~~~~ia~ll-~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 187 CLLVIEYYITNAGIS-P----LKSLSVEKTVAPFV-GDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHHHHHHCSG-G----GGGGCHHHHHGGGG-GCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCC-c----cccccchHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999998765422 1 2245 8889999 99999999999999988777664
No 89
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.37 E-value=7.9e-06 Score=81.65 Aligned_cols=181 Identities=12% Similarity=0.211 Sum_probs=132.1
Q ss_pred cccHhHHHHHHHHHHHHHcC-----CCc---ccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCCh-----hhhhHHHH
Q 039062 342 AWNIAMAGGTCLGLVARTVG-----DDI---VPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSP-----DKLLHIVN 408 (871)
Q Consensus 342 ~~~~r~~a~~~l~~l~~~~~-----~~~---~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-----~~~~~~l~ 408 (871)
.|..|..|.+.+..+....+ +.. +..+.+.+...+.|.+..+...++.++..++...+. .....++.
T Consensus 22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (278)
T 4ffb_C 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS 101 (278)
T ss_dssp SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Confidence 49999988888877665432 111 334567788888999999999999999999876432 23345567
Q ss_pred HHHHHHHHH-ccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHh
Q 039062 409 VALSFMLSA-LTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQ 486 (871)
Q Consensus 409 ~i~~~l~~~-l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~ 486 (871)
.++|.++.- + .|+.+.+|..+..++..+++... ....+++.+...+.. +|+++..++..|..++.
T Consensus 102 ~~l~~lveK~l-~~~k~~~~~~a~~~l~~~~~~~~------------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 102 TWTPLLVEKGL-TSSRATTKTQSMSCILSLCGLDT------------SITQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHTSS------------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHhcC------------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 788887764 8 89999999999988877765442 124567777777776 89999999999998887
Q ss_pred hcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCC
Q 039062 487 GYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDE 540 (871)
Q Consensus 487 ~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 540 (871)
.++.. .-...+.++.++..+..++.+. ++.||.+|..+++.+....|+.
T Consensus 169 ~fg~~--~~~~k~~l~~i~~~l~k~l~d~---~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 169 AFGLT--NVNVQTFLPELLKHVPQLAGHG---DRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHTTT--TCCHHHHHHHHGGGHHHHHTCS---SHHHHHHHHHHHHHHHTC----
T ss_pred HhCCC--cCCchhHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHhCcc
Confidence 66421 1223456777888888888877 5699999999999999988853
No 90
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.36 E-value=5.5e-06 Score=83.71 Aligned_cols=288 Identities=12% Similarity=0.068 Sum_probs=149.5
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccC
Q 039062 84 SLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVS 163 (871)
Q Consensus 84 ~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~ 163 (871)
.+++.....++..+++++.+++..+|+..--.+..++.. ++.. --..+.+.+-++++++.+|-.|++++..|..
T Consensus 60 ~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~--~~e~-iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--- 133 (355)
T 3tjz_B 60 HLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI--AEDV-IIVTSSLTKDMTGKEDSYRGPAVRALCQITD--- 133 (355)
T ss_dssp CCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT--SSCG-GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC---
T ss_pred CCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--HHHH-HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC---
Confidence 456666678899999999999999998876666665554 3222 2567888889999999999999999999865
Q ss_pred CCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 039062 164 PDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECL 243 (871)
Q Consensus 164 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l 243 (871)
+ +-.+.+.+.+.+++. |.++.||++|+-+..+++...++ ....+++.+.+.+.+.++-+.-.|+.++
T Consensus 134 ~-----~m~~~l~~~lk~~L~--d~~pyVRk~A~l~~~kL~~~~pe------~v~~~~~~l~~ll~d~n~~V~~~Al~lL 200 (355)
T 3tjz_B 134 S-----TMLQAIERYMKQAIV--DKVPSVSSSALVSSLHLLKCSFD------VVKRWVNEAQEAASSDNIMVQYHALGLL 200 (355)
T ss_dssp T-----TTHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHTTTCHH------HHHTTHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhccCHH------HHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 2 235677778888898 99999999999999987764432 2245777888888999999998888888
Q ss_pred HHHHHHhHHhhHHhHHHHHHHHHHHhhCC---ChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhh
Q 039062 244 VSISSTYYEKLAPYMQDIYSITAKAVRED---EEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPA 320 (871)
Q Consensus 244 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (871)
..+.+..+..+ ..+++ .+... ++-....-+.++..++... ++ ... ..
T Consensus 201 ~ei~~~d~~a~----~kLv~----~l~~~~l~~~~~q~~llr~l~~~~~~d-------------~~-----~~~----~~ 250 (355)
T 3tjz_B 201 YHVRKNDRLAV----SKMIS----KFTRHGLKSPFAYCMMIRVASRQLEDE-------------DG-----SRD----SP 250 (355)
T ss_dssp HHHHTTCHHHH----HHHHH----HHHSSCCSCHHHHHHHHHHHTCC---------------------------------
T ss_pred HHHHhhchHHH----HHHHH----HHhcCCCcChHHHHHHHHHHHHhcccc-------------ch-----hhH----HH
Confidence 88875432222 22222 22221 2322222233322222210 00 001 11
Q ss_pred hHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCCh
Q 039062 321 LVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSP 400 (871)
Q Consensus 321 l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~ 400 (871)
+++.+...+... . ..+-..|..++-.+.. .+...+......+...+++++...|++|+..+..++... |
T Consensus 251 ~~~~l~~~L~~~--~-------~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~-P 319 (355)
T 3tjz_B 251 LFDFIESCLRNK--H-------EMVVYEAASAIVNLPG-CSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKH-P 319 (355)
T ss_dssp ------CCCCCS--S-------HHHHHHHHHHHTC------------CCCTHHHHHHSSSSSSHHHHHHCC---------
T ss_pred HHHHHHHHHcCC--C-------hHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHC-c
Confidence 222222222210 1 1344445555544433 222333334455666777888899999998888888764 4
Q ss_pred hhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 039062 401 DKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGR 436 (871)
Q Consensus 401 ~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~ 436 (871)
..+.. .-..+..++ .|++..++.-|+.+|-+
T Consensus 320 ~~v~~----~n~~ie~li-~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 320 SAVTA----CNLDLENLV-TDANRSIATLAITTLLK 350 (355)
T ss_dssp ------------------------------------
T ss_pred HHHHH----HHHHHHHHc-cCCcHhHHHHHHHHhhh
Confidence 44433 345567788 99998888777766543
No 91
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.34 E-value=3.8e-06 Score=83.98 Aligned_cols=199 Identities=11% Similarity=0.160 Sum_probs=120.6
Q ss_pred HHhhhcCCChhhHHHHHHHHHHhhcCCChhhhh----HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCC
Q 039062 372 IEENIAKPDWRQREAATYAFGSILEGPSPDKLL----HIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIG 447 (871)
Q Consensus 372 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~----~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 447 (871)
+.+.+.|.+|+.|..|+..+..+.......... ..+..+.+.+...+ .|.|..|...++.++..++....... .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l-~DsN~~v~~~al~~l~~~~~~~~~~~-~ 91 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYI-TDSNVVAQEQAIVALNSLIDAFASSS-L 91 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCC----C
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHhhhhh-c
Confidence 557889999999999999988877653211111 11233455666788 99999999999999999887654210 0
Q ss_pred CCccchhhHHHHHHHHHHh-ccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHH
Q 039062 448 TPIITQANCQQIITVLLQS-MKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTA 525 (871)
Q Consensus 448 ~~~~~~~~~~~il~~l~~~-l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~ 525 (871)
.......+...++|.++.. +.+ .+.++..+..++..+++... ....+++.+...+.+. ++.+|..
T Consensus 92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~----------~~~~~~e~l~~~l~~K---npkv~~~ 158 (278)
T 4ffb_C 92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT----------SITQSVELVIPFFEKK---LPKLIAA 158 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS----------SSHHHHHHHGGGGGCS---CHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHhcc---CHHHHHH
Confidence 0011123456677877764 666 56778888877777765321 1123344444444433 2344433
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhH
Q 039062 526 AYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYA 605 (871)
Q Consensus 526 a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 605 (871)
++.++..++..+|....+ ..+.+
T Consensus 159 ------------------------------------------------------~l~~l~~~l~~fg~~~~~---~k~~l 181 (278)
T 4ffb_C 159 ------------------------------------------------------AANCVYELMAAFGLTNVN---VQTFL 181 (278)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHHTTTTCC---HHHHH
T ss_pred ------------------------------------------------------HHHHHHHHHHHhCCCcCC---chhHH
Confidence 444444444455433100 23345
Q ss_pred HHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhh
Q 039062 606 DQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDF 642 (871)
Q Consensus 606 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~ 642 (871)
+.+++.+..++++.+..||..|..+++.+...+|+.+
T Consensus 182 ~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~ 218 (278)
T 4ffb_C 182 PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNS 218 (278)
T ss_dssp HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcch
Confidence 6677778888888899999999999999988877543
No 92
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.32 E-value=0.00011 Score=75.39 Aligned_cols=269 Identities=12% Similarity=0.048 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHhhccCCCccchhh--HHHHHHHHHhhhcC---------CCCCHHHHHHHHHHHHHhhhcchhcccCh
Q 039062 146 HVKQATLETLGYLCEEVSPDVVEQDH--VNKILTAVVQGMNA---------SEMNNDVRLAATRALYNALSFAQANFSND 214 (871)
Q Consensus 146 ~~r~~al~~l~~l~~~~~~~~~~~~~--~~~i~~~l~~~l~~---------~~~~~~vr~~al~~l~~~~~~~~~~~~~~ 214 (871)
.....|+.+|+.+...- + . ... -...++.++..+.. ...++.++..|..+|.++..........-
T Consensus 47 ~~~~~A~~aL~nls~d~--e-~-R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDE--E-H-RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GTHHHHHHHHHHHHTSH--H-H-HHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH--H-H-HHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44556777787776431 1 0 111 11233344444421 12357899999999999864322111000
Q ss_pred hhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHH--HHHHHHHHH-hhCCChhHHHHHHHHHHHHHHHH
Q 039062 215 MERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQ--DIYSITAKA-VREDEEPVALQAIEFWSSICDEE 291 (871)
Q Consensus 215 ~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~l~~~~~~~-~~~~~~~~~~~a~~~~~~l~~~~ 291 (871)
......++.+.+++.+++++++..++.+|..+...........+. ..++.++.. ..+.+.+++..|...+..++...
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 001346888899999999999999999999987531111111111 345555555 35567788888887777765411
Q ss_pred HhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHc--CCC----cc
Q 039062 292 IDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTV--GDD----IV 365 (871)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~--~~~----~~ 365 (871)
.+. ...+.. ....+|.|...+....+.. ...++..|..+|..++... .+. +.
T Consensus 203 ~~n---------------k~~i~~--~~Gai~~Lv~lL~~~~~~~-----~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~ 260 (354)
T 3nmw_A 203 TEN---------------KADICA--VDGALAFLVGTLTYRSQTN-----TLAIIESGGGILRNVSSLIATNEDHRQILR 260 (354)
T ss_dssp HHH---------------HHHHHH--STTHHHHHHHHTTCCCSSS-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhh---------------hHHHHH--hcCcHHHHHHHhccCCCcc-----cHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 000 001110 2356777877775432111 1257777888888887631 111 11
Q ss_pred -cchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhc
Q 039062 366 -PLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 366 -~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (871)
...++.+.+.+.+.+...++.|+.++..++.+. ++...... ...+|.+...+ .+.++.+|..|+++|.+++...+
T Consensus 261 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~i~~Lv~LL-~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 261 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN-PKDQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp TTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTTHHHHHHTTT-TCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCCH
Confidence 235677777788888899999999999998653 33333322 36789999999 99999999999999999998754
No 93
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.31 E-value=1.4e-05 Score=76.69 Aligned_cols=190 Identities=12% Similarity=0.063 Sum_probs=135.8
Q ss_pred HcccCcchhhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhh---ccccc-HHHH
Q 039062 616 FACRSATVHEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEE---KILPY-CDGI 691 (871)
Q Consensus 616 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~---~~~~~-~~~i 691 (871)
+-+.+..-+..++..|...+..........++-+++.+.-.+.++ +..+...++..+..+...+.+ .+.+| ...+
T Consensus 55 lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~ 133 (266)
T 2of3_A 55 LFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFET-NPAALIKVLELCKVIVELIRDTETPMSQEEVSAF 133 (266)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 333455556667776666665544444445555666554334344 557888999999998877764 35555 4789
Q ss_pred HHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHH
Q 039062 692 MTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYS 771 (871)
Q Consensus 692 ~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~ 771 (871)
+|.|++-+.++ ...+|..+-..+-.+...++. ..+++.+.+.+..+ .+..|+++++.+.
T Consensus 134 lP~LveKlGd~--k~~vR~~~r~il~~l~~v~~~------~~v~~~l~~g~ksK-------------N~R~R~e~l~~l~ 192 (266)
T 2of3_A 134 VPYLLLKTGEA--KDNMRTSVRDIVNVLSDVVGP------LKMTPMLLDALKSK-------------NARQRSECLLVIE 192 (266)
T ss_dssp HHHHHHGGGCS--SHHHHHHHHHHHHHHHHHHCH------HHHHHHHHHGGGCS-------------CHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC--hHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHccC-------------CHHHHHHHHHHHH
Confidence 99999999887 677898888888777766543 35777777777655 3789999999999
Q ss_pred HHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccc
Q 039062 772 GIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQ 835 (871)
Q Consensus 772 ~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~ 835 (871)
.++...|-. ...++ .+.+.+...+.| .+.++|.+|+.|+..+-...|+.+..++++
T Consensus 193 ~li~~~G~~-----~~~~l-~~~~~ia~ll~D--~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~ 248 (266)
T 2of3_A 193 YYITNAGIS-----PLKSL-SVEKTVAPFVGD--KDVNVRNAAINVLVACFKFEGDQMWKAAGR 248 (266)
T ss_dssp HHHHHHCSG-----GGGGG-CHHHHHGGGGGC--SSHHHHHHHHHHHHHHHHHHTTHHHHHHCC
T ss_pred HHHHhcCCC-----ccccc-cchHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 999987643 11122 111777788886 689999999999999999999988877654
No 94
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.19 E-value=0.00087 Score=61.05 Aligned_cols=148 Identities=9% Similarity=0.087 Sum_probs=118.6
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchh
Q 039062 130 PELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQA 209 (871)
Q Consensus 130 ~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 209 (871)
.+.+..|...+.+.|+.++..++.++..+.+.. ++.+.......+++.++..+. +.+..+...|++|+..++...+-
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk--~~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALS--QENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCC--STTHHHHHHHHHHHHHHHTTCCB
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHcCCCC
Confidence 567888889999999999999999999999987 666656678889999999998 89999999999999998875431
Q ss_pred cccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHH
Q 039062 210 NFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICD 289 (871)
Q Consensus 210 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 289 (871)
.+.....+.+.+...+.++++-.+..+.+.+..+ ......+.+.+++.+.+.+.+.+++..|+.++..++.
T Consensus 109 ---~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 109 ---GSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp ---CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred ---CHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence 1223367888888888888999999999998877 1122234677777778888899999888888877754
No 95
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.12 E-value=0.00014 Score=66.22 Aligned_cols=187 Identities=14% Similarity=0.094 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 039062 36 PSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQV 115 (871)
Q Consensus 36 ~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~ 115 (871)
++.+..|.+++.+ .++.++.-|...|...++..+ ..++....+.+.+.++..+.+++..|.-.|..|
T Consensus 32 e~~l~~L~~LL~d--kD~~vk~raL~~LeellK~~~-----------~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~ 98 (265)
T 3b2a_A 32 KRALFLILELAGE--DDETTRLRAFVALGEILKRAD-----------SDLRMMVLERHLDVFINALSQENEKVTIKALRA 98 (265)
T ss_dssp HHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHSC-----------HHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHhc--cchHHHHHHHHHHHHHHHhcc-----------ccccHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 6788888888854 578899999999999887421 134566778899999999999999999999999
Q ss_pred HHHHHhhh-cCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHH
Q 039062 116 IAKVAGIE-LPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRL 194 (871)
Q Consensus 116 l~~i~~~~-~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~ 194 (871)
+..+.... .+.+.+..+.+.|...+.++++-.+..+...++.+ . + ....+.+...++..+. ..+..++.
T Consensus 99 L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k---v----~~~~~~V~~~l~sLl~--Skd~~vK~ 168 (265)
T 3b2a_A 99 LGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-Q---P----LEDSKLVRTYINELVV--SPDLYTKV 168 (265)
T ss_dssp HHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C---B----SCCCHHHHHHHHHHHT--CSSHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-C---c----ccchHHHHHHHHHHHh--CCChhHHH
Confidence 99998764 12256778899999999999999999999999987 2 2 1223455556666665 79999999
Q ss_pred HHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Q 039062 195 AATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISST 249 (871)
Q Consensus 195 ~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 249 (871)
+|+.++.++..+..+. +..+.++.-+...++++|+.++..|+..+..++..
T Consensus 169 agl~~L~eia~~S~D~----~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 169 AGFCLFLNMLNSSADS----GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHHHHHHGGGCSSC----CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcccCCH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999987764321 12345666677788899999999999999988865
No 96
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.07 E-value=3.1e-05 Score=79.60 Aligned_cols=222 Identities=14% Similarity=0.152 Sum_probs=145.1
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHH-HHHHHHHhhcC----Cc-hHHHH
Q 039062 37 SFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQ-IKTCLLNTLTS----TV-ADARS 110 (871)
Q Consensus 37 ~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~ll~~l~~----~~-~~vr~ 110 (871)
.++..|+.-+-++ ..++||-|+..||..++.+.... ..+...+.+..-. +.-..+.-++| .. ..||.
T Consensus 174 qfcE~L~~DLFdp--~WEiRHGAALGLREILR~hG~GA-----GR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRE 246 (800)
T 3oc3_A 174 DFFEQISDNLLSY--EWYKRHGAFLAFAAMFSEIDNGG-----DIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRD 246 (800)
T ss_dssp GTTHHHHHHTTCS--SHHHHHHHHHHHHHHHHHCC---------CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHH
T ss_pred HHHHHHHHHhcCc--chhhhhHHHHHHHHHHHHhccCC-----ceeccccHHHHHHHHHHHHhccccccccCeeeeehHH
Confidence 4677777767753 68999999999999997654211 1111222211111 11111111222 22 69999
Q ss_pred HHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCH
Q 039062 111 TSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNN 190 (871)
Q Consensus 111 ~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 190 (871)
.+||+++.+ .+. |.. -..+..|+..+..+.+++|++++..++++ .+. + .. ++.+++.++.++. |.+.
T Consensus 247 TaAQtLGaL-~hL-p~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~DL----L-~~-Ld~Vv~aVL~GL~--D~DD 313 (800)
T 3oc3_A 247 AAAYLLSRI-YPL-IGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL-KEF----V-ED-KDGLCRKLVSLLS--SPDE 313 (800)
T ss_dssp HHHHHHHHH-TTT-SCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GGG----C-CC-HHHHHHHHHHHTT--CSSH
T ss_pred HHHHHHHHH-HhC-Chh--HHHHHHHHhhcCCCCeeehhhhHHHHHHH-HHH----H-HH-HHHHHHHHHhhcC--Cccc
Confidence 999999999 554 533 45666666666778899999999999998 222 2 22 8899999999999 8899
Q ss_pred HHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCc--HHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHH
Q 039062 191 DVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAE--LKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKA 268 (871)
Q Consensus 191 ~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 268 (871)
+||..|..++..++ . ....+.++..+..++.+-| .......++.|+.+++...... ..+.+++.++..
T Consensus 314 DVRAVAAetLiPIA--~------p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~--~dp~LVPRL~PF 383 (800)
T 3oc3_A 314 DIKLLSAELLCHFP--I------TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS--IPPERLKDIFPC 383 (800)
T ss_dssp HHHHHHHHHHTTSC--C------SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC--CCSGGGGGTGGG
T ss_pred HHHHHHHHHhhhhc--c------hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc--cChHHHHHHHhh
Confidence 99999999998876 1 1223667777777665322 1234566777887776543211 112556666667
Q ss_pred hhCCChhHHHHHHHHHHHHH
Q 039062 269 VREDEEPVALQAIEFWSSIC 288 (871)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~l~ 288 (871)
+.+.-.++|..++..+..+.
T Consensus 384 LRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 384 FTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp GTCSSHHHHHHHHHHTTTCC
T ss_pred hcCCcHHHHHHHHHHHHHHH
Confidence 88888899998888765553
No 97
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.05 E-value=0.00027 Score=80.25 Aligned_cols=158 Identities=13% Similarity=0.143 Sum_probs=92.3
Q ss_pred chHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH-HHHH-HHHHHHccCCCcHHHHHHHHHHHHHHhhhhccC
Q 039062 367 LVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV-NVAL-SFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGS 444 (871)
Q Consensus 367 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l-~~i~-~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~ 444 (871)
.+.|.+. .++++++..|..|+.+++.++++. ....-.+ ..++ +.+...+ .|++..||..|+++|++++.....+
T Consensus 35 ~i~Pll~-~L~S~~~~~r~~A~~al~~l~~~~--~~~~l~~~~~~v~~ll~~lL-~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 35 KILPVLK-DLKSPDAKSRTTAAGAIANIVQDA--KCRKLLLREQVVHIVLTETL-TDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp TTHHHHH-HHSSSCCSHHHHHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hHHHHHH-HcCCCCHHHHHHHHHHHHHHHcCc--HHHHHHHHcCCHHHHHHHHc-CCCCHHHHHHHHHHHHHHHhhcCch
Confidence 4556665 478999999999999999999752 3222222 2444 4556678 9999999999999999998653210
Q ss_pred CCCCCccchhhHHHHHHHHHHhccC---------C-------------hHHHHHHHHHHHHHHhhcccCCCCCCCcchH-
Q 039062 445 TIGTPIITQANCQQIITVLLQSMKD---------T-------------PNVAEKACGALYFLAQGYEDVGPSSPLTPFF- 501 (871)
Q Consensus 445 ~~~~~~~~~~~~~~il~~l~~~l~d---------~-------------~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~- 501 (871)
.....+-..+++.|...+.. . +.+...++.+|..++++-.+ .+....
T Consensus 111 -----~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~-----~~~~v~~ 180 (684)
T 4gmo_A 111 -----FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDE-----IHEAVAT 180 (684)
T ss_dssp -----HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHT
T ss_pred -----HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHh
Confidence 00011112245544444321 0 23445667777777764211 111100
Q ss_pred HHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcC
Q 039062 502 QEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSST 538 (871)
Q Consensus 502 ~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~ 538 (871)
...+..++..+.+.+.....++..++.||..+.+...
T Consensus 181 ~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~ 217 (684)
T 4gmo_A 181 KQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNL 217 (684)
T ss_dssp CHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCH
T ss_pred cccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCH
Confidence 1233344444332221135788999999999877543
No 98
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.00 E-value=3.1e-06 Score=73.38 Aligned_cols=121 Identities=13% Similarity=0.206 Sum_probs=81.3
Q ss_pred cccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhcc
Q 039062 364 IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHG 443 (871)
Q Consensus 364 ~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~ 443 (871)
..+...+.+...+++++|.+|..++.+++.+... . ++.++..+ +|+++.||..++++|+++..
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~----~--------~~~L~~~L-~d~~~~vR~~A~~aL~~~~~---- 71 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGDE----A--------FEPLLESL-SNEDWRIRGAAAWIIGNFQD---- 71 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSCSST----T--------HHHHHHGG-GCSCHHHHHHHHHHHGGGCS----
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch----H--------HHHHHHHH-cCCCHHHHHHHHHHHHhcCC----
Confidence 3455566677888899999999988777655331 1 36677889 99999999999999887642
Q ss_pred CCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhH
Q 039062 444 STIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRL 522 (871)
Q Consensus 444 ~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~v 522 (871)
+..++.|...+.| ++.||..++++|..+.. +..++.|...+++. +..+
T Consensus 72 -------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---------------~~a~~~L~~~l~d~---~~~v 120 (131)
T 1te4_A 72 -------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------------ERVRAAMEKLAETG---TGFA 120 (131)
T ss_dssp -------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------------HHHHHHHHHHTTSC---CTHH
T ss_pred -------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------HHHHHHHHHHHhCC---CHHH
Confidence 2456677777776 78999999999988721 34566666777654 4578
Q ss_pred HHHHHHHHHH
Q 039062 523 RTAAYETLNE 532 (871)
Q Consensus 523 r~~a~~~l~~ 532 (871)
|..+..+|+.
T Consensus 121 r~~A~~aL~~ 130 (131)
T 1te4_A 121 RKVAVNYLET 130 (131)
T ss_dssp HHHHHHHGGG
T ss_pred HHHHHHHHHh
Confidence 9888888764
No 99
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.00 E-value=0.00023 Score=82.86 Aligned_cols=410 Identities=10% Similarity=0.045 Sum_probs=205.8
Q ss_pred HHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhh--cCC----CCchHHHHHHHHhhc-CCChHHHHHHHHHHHHHhhcc
Q 039062 90 KTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIE--LPQ----KQWPELIVSLLSNVH-QLPAHVKQATLETLGYLCEEV 162 (871)
Q Consensus 90 ~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~--~~~----~~~~~ll~~L~~~l~-~~~~~~r~~al~~l~~l~~~~ 162 (871)
...++..+-....+.+..-...+|++++.+.+.. +|. .-|.-+.|.|...+. +-+++....=..++..++...
T Consensus 506 l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~ 585 (997)
T 1vsy_5 506 MSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVV 585 (997)
T ss_dssp GGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCC
Confidence 3456666666777777777889999999987643 332 245667788888887 445544433344455555544
Q ss_pred CCCccchhhHHHHHHHHHh--h-hcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHH
Q 039062 163 SPDVVEQDHVNKILTAVVQ--G-MNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAA 239 (871)
Q Consensus 163 ~~~~~~~~~~~~i~~~l~~--~-l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a 239 (871)
.| .....++..+.. . +..+..+.-.....+..+..++...+..+.. .+.++..+. +.++-..+|...
T Consensus 586 Dp-----rR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~---~~~~l~~~~--l~h~y~~VRe~I 655 (997)
T 1vsy_5 586 DL-----RRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD---VGKLFDELV--FDHPYDQVRQAV 655 (997)
T ss_dssp CG-----GGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC---CHHHHHHCC--SCCSCHHHHHHH
T ss_pred Ch-----hhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc---HHHHHHHHH--hCCChHHHHHHH
Confidence 23 223455555522 1 1111111111112222333322211111211 144444444 777888999999
Q ss_pred HHHHHHHHHHhHHhhHHhHHHHHHHHHHH---hhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCc-------
Q 039062 240 FECLVSISSTYYEKLAPYMQDIYSITAKA---VREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIP------- 309 (871)
Q Consensus 240 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------- 309 (871)
...|..+.........+....+++.+... +.-..........+.+..+.+.......+.. ...+++..+
T Consensus 656 g~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~-~~~~~~~~~s~y~~~~ 734 (997)
T 1vsy_5 656 AKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVV-GLNPQQFIKTDYFYRT 734 (997)
T ss_dssp HHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTS-SCCSTTTTTSHHHHHH
T ss_pred HHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhccc-ccCccccchHHHHHHH
Confidence 99998888764211012233333322211 0000000000011111111111000000000 000000000
Q ss_pred --------------hhhhHHhhhhh-hHHHHHHHHhcccCCcccccccccHhHH-HHHHHHHHHHHc-CCCcccchHHHH
Q 039062 310 --------------CFYFIKQALPA-LVPLLLEILLKQEEDQDQEEGAWNIAMA-GGTCLGLVARTV-GDDIVPLVIPFI 372 (871)
Q Consensus 310 --------------~~~~~~~~~~~-l~~~l~~~l~~~~~d~~~~~~~~~~r~~-a~~~l~~l~~~~-~~~~~~~l~~~l 372 (871)
....+.++++. ++|.++.. .+..|+ + .+... |..++..++... +...++.++..+
T Consensus 735 kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l----~~~~d~-~---eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l 806 (997)
T 1vsy_5 735 STIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGL----VKHKDV-C---ALASLDPVRLYAGLGYMPIRKNHVAAIVDYV 806 (997)
T ss_dssp HHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTT----SSCSHH-H---HHTTCCSHHHHHHTSSSCCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHH----hhcCcH-H---HHHhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 00112222222 33333221 111111 1 23333 455666665433 444455566666
Q ss_pred Hhhhc-CCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCc-HHHHHHHHHHHHHHhhhh-ccCCCCCC
Q 039062 373 EENIA-KPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN-NHVKDTTAWTLGRIFEFL-HGSTIGTP 449 (871)
Q Consensus 373 ~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~-~~vr~~a~~~l~~~~~~~-~~~~~~~~ 449 (871)
.+... +++| .|.+++..+..+.-.-..-........+...++..| .|+. .+||..|..+|+.+.... .
T Consensus 807 ~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L-~D~q~~EVRe~Aa~tLsgll~c~~~------- 877 (997)
T 1vsy_5 807 CSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNL-YNEQFVEVRVRAASILSDIVHNWKE------- 877 (997)
T ss_dssp SCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTT-TCSSCHHHHHHHHHHHHHHHHSCCS-------
T ss_pred HHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHHHcCCc-------
Confidence 66555 6899 999998877666542001111112256788899999 9999 999999999999886544 2
Q ss_pred ccchhhHHHHHHHHHHhccC-------------ChHHHHHHHHHHHHHHhhcccCCCCCCC--cchHHHHHHHHHHhhcc
Q 039062 450 IITQANCQQIITVLLQSMKD-------------TPNVAEKACGALYFLAQGYEDVGPSSPL--TPFFQEIVQSLLTVTHR 514 (871)
Q Consensus 450 ~~~~~~~~~il~~l~~~l~d-------------~~~v~~~a~~~l~~l~~~~~~~~~~~~l--~~~~~~il~~l~~~l~~ 514 (871)
......++..+.+.+.. ....+.+|+-.|..++... +..+ .+++++++..|.....+
T Consensus 878 ---~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~-----Py~vP~P~w~P~~l~~La~~~~~ 949 (997)
T 1vsy_5 878 ---EQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAF-----PYVFPLPPWIPKNLSNLSSWART 949 (997)
T ss_dssp ---HHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTC-----SCCSSCCTHHHHHHHHHHTTSSS
T ss_pred ---hhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhC-----CCCCCCCcccHHHHHHHHHHhCC
Confidence 01122333333333211 0134667888888888764 4444 78999999998888777
Q ss_pred CChhhhhHHHHHHHHHHHHHHhcCC
Q 039062 515 EDAGESRLRTAAYETLNEVVRSSTD 539 (871)
Q Consensus 515 ~~~~~~~vr~~a~~~l~~l~~~~~~ 539 (871)
+. .++..+=.+++.+-++..+
T Consensus 950 ~~----~i~~tvk~tlseFkrTH~D 970 (997)
T 1vsy_5 950 SG----MTGNAAKNTISEFKKVRAD 970 (997)
T ss_dssp CS----SHHHHTHHHHHHHHHHTST
T ss_pred CC----chHHHHHHHHHHHHhccch
Confidence 53 3777777888877776654
No 100
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.99 E-value=0.00054 Score=70.73 Aligned_cols=252 Identities=12% Similarity=0.050 Sum_probs=156.5
Q ss_pred CCch-HHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCC--CccchhhHHHHHHHH----Hhhhc---CCCCCHHHHHHH
Q 039062 127 KQWP-ELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSP--DVVEQDHVNKILTAV----VQGMN---ASEMNNDVRLAA 196 (871)
Q Consensus 127 ~~~~-~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~~i~~~l----~~~l~---~~~~~~~vr~~a 196 (871)
..|| ++...|...+-++++++|++|..+|..+...... ......+.+-.+..+ +..+. ++..-..||..|
T Consensus 169 ~eWPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETa 248 (800)
T 3oc3_A 169 IENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAA 248 (800)
T ss_dssp CCSGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHH
Confidence 4675 4889999999999999999999999999887521 010011112222222 22222 112456899999
Q ss_pred HHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHhhCCChhH
Q 039062 197 TRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPV 276 (871)
Q Consensus 197 l~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 276 (871)
.++++.+ .+.+..+ .++..+...+..+.+++|..++-.+.-+ .+.+.. ++.+++.++..+.+.++++
T Consensus 249 AQtLGaL-~hLp~e~-------~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL~GL~D~DDDV 315 (800)
T 3oc3_A 249 AYLLSRI-YPLIGPN-------DIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVED-KDGLCRKLVSLLSSPDEDI 315 (800)
T ss_dssp HHHHHHH-TTTSCSC-------CHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHH-HhCChhH-------HHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHH-HHHHHHHHHhhcCCcccHH
Confidence 9999998 5544331 1233333455778999999998888755 222222 7888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHH
Q 039062 277 ALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLV 356 (871)
Q Consensus 277 ~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l 356 (871)
+..|.+.+..++. ...++.++..+.+.|... ||- .....+..+.|..+
T Consensus 316 RAVAAetLiPIA~-------------------------p~~l~~LL~iLWd~L~~L-DDL------SASTgSVMdLLAkL 363 (800)
T 3oc3_A 316 KLLSAELLCHFPI-------------------------TDSLDLVLEKCWKNIESE-ELI------SVSKTSNLSLLTKI 363 (800)
T ss_dssp HHHHHHHHTTSCC-------------------------SSTHHHHHHHHHHHHHTC-CSC------CTTHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcc-------------------------hhhHHHHHHHHHHHhhhh-ccc------chhhHHHHHHHHHH
Confidence 9999888876651 122445677777777654 221 11122234555555
Q ss_pred HHHcCC-CcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 039062 357 ARTVGD-DIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTL 434 (871)
Q Consensus 357 ~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l 434 (871)
+..-.. ..-|.++|.+-..+.++-..+|.+++.++..+.. ...+.-+++. .+ -++++.|+..+..+.
T Consensus 364 ~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~-------~~~LRLIFQN---IL-LE~neeIl~lS~~VW 431 (800)
T 3oc3_A 364 YRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSE-------ESIDFLVAEV---VL-IEEKDEIREMAIKLL 431 (800)
T ss_dssp HHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCC-------HHHHHHHHHH---HH-HCSCHHHHHHHHHHH
T ss_pred HcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh-------hhHHHHHHHH---HH-hCCcHHHHHHHHHHH
Confidence 554321 1223444555555566667899998888777661 1223333332 33 678888888877664
No 101
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.90 E-value=0.012 Score=63.43 Aligned_cols=325 Identities=11% Similarity=0.129 Sum_probs=189.4
Q ss_pred CchHHHHHHHHhhcCCC-hHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhc
Q 039062 128 QWPELIVSLLSNVHQLP-AHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSF 206 (871)
Q Consensus 128 ~~~~ll~~L~~~l~~~~-~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 206 (871)
.=.+-++.|...+++.. .+-|..|+..|..+.+.+ +...+ ..-++.++..|..+..+.++-+.++++|.+++.-
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y-~~~Vg----~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY-RLEVG----IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN 92 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT-TTHHH----HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh-HHHhh----hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 33567777887776653 567999999999998877 44332 2234556666765457888888999999887653
Q ss_pred chhccc------C-h--h--hH------HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHH---HHHHHHH
Q 039062 207 AQANFS------N-D--M--ER------DYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQ---DIYSITA 266 (871)
Q Consensus 207 ~~~~~~------~-~--~--~~------~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~---~l~~~~~ 266 (871)
.+.... . + . +. ..-+..++.+++..+..+|..++++|..++...+......+- .=++.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 221100 0 0 0 01 234778888999999999999999999999998875544433 3466666
Q ss_pred HHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCcccccccccHh
Q 039062 267 KAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQEEGAWNIA 346 (871)
Q Consensus 267 ~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r 346 (871)
..+.+..+.+|-.|+.++..+++...++.+ .+ .+...++.+++.+... ..- ++ .
T Consensus 173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQk----------------lV--AFEnaFe~Lf~Ii~~E--g~~--~G----g 226 (651)
T 3grl_A 173 DLLADSREVIRNDGVLLLQALTRSNGAIQK----------------IV--AFENAFERLLDIITEE--GNS--DG----G 226 (651)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHTTCHHHHH----------------HH--HHTTHHHHHHHHHHHH--TGG--GS----H
T ss_pred HHHhCchHHHHHHHHHHHHHHhcCCHHHHH----------------HH--HHhccHHHHHHHHHhc--CCC--cc----c
Confidence 788888999999999999998775433211 11 1234455566555431 110 00 1
Q ss_pred HHHHHHHHHHHHHcC-----------CCcccchHHHHHhhhcCCChhhHH-----HHHHHHHHhhcCCChh-hhh---HH
Q 039062 347 MAGGTCLGLVARTVG-----------DDIVPLVIPFIEENIAKPDWRQRE-----AATYAFGSILEGPSPD-KLL---HI 406 (871)
Q Consensus 347 ~~a~~~l~~l~~~~~-----------~~~~~~l~~~l~~~l~~~~~~~r~-----~a~~~l~~l~~~~~~~-~~~---~~ 406 (871)
....+|+..+..... ...+|.+.+.+...-....|..+. +++.++..+.....+. ... ..
T Consensus 227 ivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~ 306 (651)
T 3grl_A 227 IVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKA 306 (651)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 122344444433321 223455554443211224575432 3455666666653210 111 11
Q ss_pred H--HHHHHHHHHHccCCC--cHHHHHHHHHHHHHHhhhhccCCC-----CCCccchhhHHHHHHHHHHhccC--ChHHHH
Q 039062 407 V--NVALSFMLSALTKDP--NNHVKDTTAWTLGRIFEFLHGSTI-----GTPIITQANCQQIITVLLQSMKD--TPNVAE 475 (871)
Q Consensus 407 l--~~i~~~l~~~l~~d~--~~~vr~~a~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~il~~l~~~l~d--~~~v~~ 475 (871)
+ ..+++.++..+ ..+ ...++..|+.+++.+....+..-. .-+. ....+.++..++..+.+ ...+|.
T Consensus 307 ~~~~g~l~~Ll~ll-~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~--~~~~p~li~lL~~~~~~~~~~~lR~ 383 (651)
T 3grl_A 307 MFQCGLLQQLCTIL-MATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPS--NPPRPAIVVLLMSMVNERQPFVLRC 383 (651)
T ss_dssp HHHTTHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESS--SSCEEHHHHHHHHHTCTTSCHHHHH
T ss_pred HHHCCCHHHHHHHH-ccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCC--CCCcChHHHHHHHHhcccccHHHHH
Confidence 1 24566677766 544 457899999999988765421000 0000 00112344445555554 467899
Q ss_pred HHHHHHHHHHh
Q 039062 476 KACGALYFLAQ 486 (871)
Q Consensus 476 ~a~~~l~~l~~ 486 (871)
+++.++..++.
T Consensus 384 Aa~~cl~ay~~ 394 (651)
T 3grl_A 384 AVLYCFQCFLY 394 (651)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988874
No 102
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.67 E-value=0.021 Score=64.80 Aligned_cols=155 Identities=10% Similarity=0.089 Sum_probs=84.7
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHH-HHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhc
Q 039062 132 LIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILT-AVVQGMNASEMNNDVRLAATRALYNALSFAQAN 210 (871)
Q Consensus 132 ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~-~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 210 (871)
++|. ++.++++++..|..|+.++..|++.- +.-..-....++. .+...+. |++..||.+|..+|.++....+..
T Consensus 36 i~Pl-l~~L~S~~~~~r~~A~~al~~l~~~~--~~~~l~~~~~~v~~ll~~lL~--D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 36 ILPV-LKDLKSPDAKSRTTAAGAIANIVQDA--KCRKLLLREQVVHIVLTETLT--DNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp THHH-HHHHSSSCCSHHHHHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHTTTT--CSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHH-HHHcCCCCHHHHHHHHHHHHHHHcCc--HHHHHHHHcCCHHHHHHHHcC--CCCHHHHHHHHHHHHHHHhhcCch
Confidence 3443 35588999999999999999998742 1110112234444 4455666 899999999999999986432211
Q ss_pred ccChhhHHHHHHHHHHhhc--------------cCc-------HHHHHHHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHH
Q 039062 211 FSNDMERDYIMRVVCEATQ--------------SAE-------LKIRQAAFECLVSISSTYYEKLAPYMQ-DIYSITAKA 268 (871)
Q Consensus 211 ~~~~~~~~~i~~~l~~~l~--------------~~~-------~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~ 268 (871)
......+..+++.+...+. ... +++...++.++..+++.....+..... ..+..++..
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 1111111123333322221 011 123334556666666554443322221 233333333
Q ss_pred hh---CCChhHHHHHHHHHHHHHHHH
Q 039062 269 VR---EDEEPVALQAIEFWSSICDEE 291 (871)
Q Consensus 269 ~~---~~~~~~~~~a~~~~~~l~~~~ 291 (871)
+. ....+++..|+.++..+.+..
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~dn 216 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSEDN 216 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhccC
Confidence 32 234578889999998887753
No 103
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.55 E-value=0.0002 Score=61.73 Aligned_cols=104 Identities=21% Similarity=0.280 Sum_probs=78.8
Q ss_pred ccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCC
Q 039062 343 WNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDP 422 (871)
Q Consensus 343 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~ 422 (871)
+.+|..|..+|..+ ++. . .+.+...+.+++|.+|..++.+++.+.. +..++.+...+ .|+
T Consensus 26 ~~vR~~A~~~L~~~----~~~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~-----------~~a~~~L~~~L-~d~ 85 (131)
T 1te4_A 26 KWVRRDVSTALSRM----GDE---A-FEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLL-EDD 85 (131)
T ss_dssp CCSSSSCCSSTTSC----SST---T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHH-HHC
T ss_pred HHHHHHHHHHHHHh----Cch---H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHH-cCC
Confidence 45676666655433 222 2 3677788889999999999999988753 23477788889 999
Q ss_pred cHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHH
Q 039062 423 NNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYF 483 (871)
Q Consensus 423 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~ 483 (871)
++.||..++++|+++.. +..++.|.+.+.| ++.||..|+.+|..
T Consensus 86 ~~~VR~~A~~aL~~~~~-----------------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 86 SGFVRSGAARSLEQIGG-----------------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp CTHHHHHHHHHHHHHCS-----------------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHhCc-----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 99999999999998742 2567788888876 78999999988753
No 104
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.46 E-value=0.13 Score=52.79 Aligned_cols=186 Identities=10% Similarity=0.071 Sum_probs=116.5
Q ss_pred CCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCc
Q 039062 50 DKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQW 129 (871)
Q Consensus 50 ~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~ 129 (871)
......+++|+.++.++++ .++ +..+.-.++++.+..+++..||.++..-|..+++. ...
T Consensus 39 kg~~k~K~LaaQ~I~kffk------------~FP----~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i 98 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFK------------HFP----ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENL 98 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGG------------GCG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCH
T ss_pred CCCHHHHHHHHHHHHHHHh------------hCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhh
Confidence 4469999999999988875 333 33445566788899999999999888888877765 245
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchh
Q 039062 130 PELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQA 209 (871)
Q Consensus 130 ~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 209 (871)
+.+...|.|+++..++..+...=..|..+...- + ...+..++..+.. ++..+|..+++.+..-+.-.+.
T Consensus 99 ~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~D-p----k~tl~~lf~~i~~------~~e~~Rer~lkFi~~kl~~l~~ 167 (507)
T 3u0r_A 99 PRVADILTQLLQTDDSAEFNLVNNALLSIFKMD-A----KGTLGGLFSQILQ------GEDIVRERAIKFLSTKLKTLPD 167 (507)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-H----HHHHHHHHHHHHH------SCHHHHHHHHHHHHHHGGGSCT
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHhcC-h----HHHHHHHHHHHcc------cchHHHHHHHHHHHHHHhhcch
Confidence 789999999999888766665555555554432 1 1223333333332 3579999999988776544333
Q ss_pred cccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHHHHHHHHHHh
Q 039062 210 NFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQDIYSITAKAV 269 (871)
Q Consensus 210 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~ 269 (871)
.....+.-..+...+...+++-..+-....+.+|..+- .+... ....++++++....
T Consensus 168 ~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lk--l~~t~-~g~qeLv~ii~eQa 224 (507)
T 3u0r_A 168 EVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLK--SLQTV-SGRQQLVELVAEQA 224 (507)
T ss_dssp TTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSG--GGSSH-HHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcc--cccCc-hHHHHHHHHHHHHH
Confidence 22223333556777777776555544433343332110 11222 33456777776654
No 105
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.45 E-value=0.0033 Score=67.64 Aligned_cols=339 Identities=12% Similarity=0.084 Sum_probs=188.8
Q ss_pred hHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHH
Q 039062 500 FFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGL 579 (871)
Q Consensus 500 ~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 579 (871)
-..+-++.|.+.+++... ..=|..|+..|..+.+..+. ..-..-++.+++.+++. .+|.+ +...
T Consensus 18 s~~etI~~L~~Rl~~~tl--~eDRR~Av~~Lk~~sk~y~~---~Vg~~~l~~li~~L~~d-------~~D~e----~v~~ 81 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTL--LDDRRNAVRALKSLSKKYRL---EVGIQAMEHLIHVLQTD-------RSDSE----IIGY 81 (651)
T ss_dssp CHHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHTTTTTTT---HHHHHTHHHHHHHHHSC-------TTCHH----HHHH
T ss_pred ChhhHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHHhHH---HhhhhhHHHHHHHHhcc-------cccHH----HHHH
Confidence 445556666666655432 23477899999988766554 34455678888887653 23332 3334
Q ss_pred HHHHHHHHHHHhCCCCC------chhhhh-hhH------HHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh
Q 039062 580 LCGCLQVIIQKLGSSEP------TKYVFM-QYA------DQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM 646 (871)
Q Consensus 580 ~~~~l~~l~~~~~~~~~------~~~~~~-~~~------~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l 646 (871)
+++++..+...-+.++. ..+.+. .+. +.-++.++.+|+..+..+|-.++.+|..++..-++.....+
T Consensus 82 ~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~I 161 (651)
T 3grl_A 82 ALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQII 161 (651)
T ss_dssp HHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 66666554321111000 000011 112 24478889999999999999999999999998887665544
Q ss_pred ---HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhccccc--HHHHHHHHHHHccCCCC--CCcCCchHHHHHHHH
Q 039062 647 ---PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPY--CDGIMTQLLKDLSSNQL--HRSVKPPIFSCFGDI 719 (871)
Q Consensus 647 ---~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~--~~~i~~~l~~~l~~~~~--~~~v~~~~~~~l~~i 719 (871)
|.-++.|+..+.+..+ .+|..++.+|..+++.-.+ ++.. +.+.++.|++.+..+.. ...+-..++..+..+
T Consensus 162 l~~p~gi~~Lv~lL~d~rE-~iRneallLL~~Lt~~n~~-iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nL 239 (651)
T 3grl_A 162 LVSPMGVSRLMDLLADSRE-VIRNDGVLLLQALTRSNGA-IQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNL 239 (651)
T ss_dssp HHSTTHHHHHHGGGGCSSH-HHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHH
T ss_pred HhCcccHHHHHHHHhCchH-HHHHHHHHHHHHHhcCCHH-HHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 4689999999987755 7999999999998775441 2111 23567777777766521 112344566667776
Q ss_pred HHhhccChHHhHHH--HHHHHHHHHhhcccCCCCChhHHHHHH-HHH--HHHHHHHHHHhhhccCCcccccc--ccchHH
Q 039062 720 ALAIGENFEKYLMY--AMPMLQSAADLSAHTANVDDDMTEYTN-SLR--NGILEAYSGIFQGFKNSPKTQLL--IPYAPH 792 (871)
Q Consensus 720 ~~~~~~~~~~~~~~--i~~~l~~~l~~~~~~~~~d~~~~~~~~-~~r--~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~ 792 (871)
...-..+ ..|+-+ .+|.+...+... + +...+.. .++ ..++.++.-++..-+.......- .-+-..
T Consensus 240 Lr~N~sN-Q~~FrEt~~i~~L~~LL~~~------~-~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g 311 (651)
T 3grl_A 240 LKNNNSN-QNFFKEGSYIQRMKPWFEVG------D-ENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCG 311 (651)
T ss_dssp HTTCHHH-HHHHHHTTCGGGGGGGGCCC------S-CSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTT
T ss_pred HhcCHHH-HHHHHHcCCHHHHHHHhCCC------c-cccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCC
Confidence 6553211 111111 222222223221 1 1001110 111 12444444444331110000000 011113
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcc---ccc----ccccchHHHHHHHHHHHcC-CChhhHHHHHHHHHH
Q 039062 793 ILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGS---NAG----SLIQQSLTSKDFLNECLSS-KDHMIKESAEWARLA 864 (871)
Q Consensus 793 i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~---~~~----~~l~~~~~v~~~l~~~~~~-~~~~~~~~~~~~~~~ 864 (871)
++..+++++........++..|+.+++++++..+. .|. |+.+..+.+..+|..+..+ ...++|-.|.+.++.
T Consensus 312 ~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~a 391 (651)
T 3grl_A 312 LLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQC 391 (651)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 56667777665556889999999999999875432 222 3433334555655555433 557889888887664
No 106
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.05 E-value=0.06 Score=55.27 Aligned_cols=167 Identities=12% Similarity=0.133 Sum_probs=107.0
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHH
Q 039062 96 CLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKI 175 (871)
Q Consensus 96 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i 175 (871)
.++.+.. .+...+..+|+.|...++. +| .--.+.++.++.++.+.+..+|..|+..|-.+|.. .+...+
T Consensus 33 ~Il~~~k-g~~k~K~LaaQ~I~kffk~-FP-~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--------~~i~ki 101 (507)
T 3u0r_A 33 VILDGVK-GGTKEKRLAAQFIPKFFKH-FP-ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--------ENLPRV 101 (507)
T ss_dssp HHHHGGG-SCHHHHHHHHHHHHHHGGG-CG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--------TCHHHH
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHhh-Ch-hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--------hhhhhH
Confidence 3444333 3588899999999999987 47 34456899999999999999999999999877763 346777
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHh-HHhh
Q 039062 176 LTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTY-YEKL 254 (871)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~ 254 (871)
...|.+.|++ .++.-+..+=++|..++...+ ...+..++..+..+++.+|..++..|..-+... .+.+
T Consensus 102 aDvL~QlLqt--dd~~E~~~V~~sL~sllk~Dp---------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l 170 (507)
T 3u0r_A 102 ADILTQLLQT--DDSAEFNLVNNALLSIFKMDA---------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVL 170 (507)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHHHHHHHCH---------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTS
T ss_pred HHHHHHHHhc--cchHHHHHHHHHHHHHHhcCh---------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhc
Confidence 7788888884 555555555566666543321 334555555555568899999998887655442 2233
Q ss_pred HHhHHH-HHHHHHHHhhCCChhHHHHHHHHH
Q 039062 255 APYMQD-IYSITAKAVREDEEPVALQAIEFW 284 (871)
Q Consensus 255 ~~~~~~-l~~~~~~~~~~~~~~~~~~a~~~~ 284 (871)
..-+.. ++..+...+++...+-....++++
T Consensus 171 ~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL 201 (507)
T 3u0r_A 171 TKEVEELILTESKKVLEDVTGEEFVLFMKIL 201 (507)
T ss_dssp CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 333332 344444455554433333334443
No 107
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.00 E-value=0.0028 Score=59.95 Aligned_cols=178 Identities=12% Similarity=0.029 Sum_probs=111.3
Q ss_pred chHHHHHhhhcCCCh--hhHHHHHHHHHHhhcCCChhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhcc
Q 039062 367 LVIPFIEENIAKPDW--RQREAATYAFGSILEGPSPDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHG 443 (871)
Q Consensus 367 ~l~~~l~~~l~~~~~--~~r~~a~~~l~~l~~~~~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~ 443 (871)
..+|.+.+.+.+++. ..+..|...+..++..- ++.-.... ...+|.++..| .++++.+|..|+|+|..++.....
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL-~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLL-KVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHH
Confidence 345666677788777 77777888888888643 12211222 35689999999 999999999999999999864321
Q ss_pred CCCCCCccchhhHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhc-----cC-
Q 039062 444 STIGTPIITQANCQQIITVLLQSMKD--TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTH-----RE- 515 (871)
Q Consensus 444 ~~~~~~~~~~~~~~~il~~l~~~l~d--~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~-----~~- 515 (871)
....-.-...+|.|++.|.+ ++.+++.++.+|.++...-.. + ......-++.|...+. ..
T Consensus 86 ------nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~---k---~~i~~~~i~~Lv~ll~~p~sG~~~ 153 (233)
T 3tt9_A 86 ------NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL---K---NLMITEALLTLTENIIIPFSGWPE 153 (233)
T ss_dssp ------HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG---H---HHHHHHHHHHHCCCCCHHHHCCCG
T ss_pred ------HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh---H---HHHHhccHHHHHHHHhccccCCcc
Confidence 11111122478899998873 678999999999998642110 1 1122233444444321 00
Q ss_pred -------ChhhhhHHHHHHHHHHHHHHhcCCCcHHHH---HHHHHHHHHHHHHh
Q 039062 516 -------DAGESRLRTAAYETLNEVVRSSTDETAPMV---LQLVPVIMMELHKT 559 (871)
Q Consensus 516 -------~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~---~~ll~~l~~~l~~~ 559 (871)
...+..++..+..+|..+...-++ ....+ ..+++.++..++..
T Consensus 154 ~~~~~~~~~~~~~v~~na~~~L~nLss~~~~-~R~~~r~~~Gli~~Lv~~l~~~ 206 (233)
T 3tt9_A 154 GDYPKANGLLDFDIFYNVTGCLRNMSSAGAD-GRKAMRRCDGLIDSLVHYVRGT 206 (233)
T ss_dssp GGCCCCCTTCCHHHHHHHHHHHHHHTTSCHH-HHHHHHTSTTHHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHhcCCHH-HHHHHHHCCCcHHHHHHHHHhh
Confidence 011457888999999999775321 12222 34667777777654
No 108
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.73 E-value=0.012 Score=55.68 Aligned_cols=193 Identities=10% Similarity=0.003 Sum_probs=114.2
Q ss_pred HHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcC---CCcc-cchHHHHHhhhcCCChhhHHHHHHHHHHhhcC
Q 039062 322 VPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVG---DDIV-PLVIPFIEENIAKPDWRQREAATYAFGSILEG 397 (871)
Q Consensus 322 ~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~---~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 397 (871)
+|.+++.|...+.+ -.++..|..++..++...+ ..+. ...+|.+.+.+.+++...|+.|+.+|..++.+
T Consensus 10 i~~lV~lL~s~~~~-------~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 10 LERAVSMLEADHML-------PSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp HHHHHHTCCSSCCC-------HHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCch-------HHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 56666665432211 1345556677877775432 1121 23457777788888999999999999999975
Q ss_pred CChhhhhHHH--HHHHHHHHHHccC-CCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhcc------
Q 039062 398 PSPDKLLHIV--NVALSFMLSALTK-DPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMK------ 468 (871)
Q Consensus 398 ~~~~~~~~~l--~~i~~~l~~~l~~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~------ 468 (871)
. .+. +..+ ...+|.++..+ . .+++.++..+..+|..++.... ........-+|.|.+.+.
T Consensus 83 ~-~~n-k~~I~~~GaI~~Lv~lL-~~~~~~~~~e~a~~aL~nLS~~~~--------~k~~i~~~~i~~Lv~ll~~p~sG~ 151 (233)
T 3tt9_A 83 D-NDN-KLEVAELNGVPRLLQVL-KQTRDLETKKQITGLLWNLSSNDK--------LKNLMITEALLTLTENIIIPFSGW 151 (233)
T ss_dssp C-HHH-HHHHHHTTHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHTSGG--------GHHHHHHHHHHHHCCCCCHHHHCC
T ss_pred C-HHH-HHHHHHcCCHHHHHHHH-ccCCCHHHHHHHHHHHHHHHcChh--------hHHHHHhccHHHHHHHHhccccCC
Confidence 3 222 2222 35788899999 7 4788999988877777765432 123334455677665432
Q ss_pred -----------CChHHHHHHHHHHHHHHhhcccCCCCCCCcc---hHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHH
Q 039062 469 -----------DTPNVAEKACGALYFLAQGYEDVGPSSPLTP---FFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVV 534 (871)
Q Consensus 469 -----------d~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~---~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~ 534 (871)
.++.|++.|..+|.+++..-.+. ...+.. .++.++..+-....+.+. +.+.++.++.+|..+.
T Consensus 152 ~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~--R~~~r~~~Gli~~Lv~~l~~~~~~~~~-~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 152 PEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADG--RKAMRRCDGLIDSLVHYVRGTIADYQP-DDKATENCVCILHNLS 228 (233)
T ss_dssp CGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHH--HHHHHTSTTHHHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHC
T ss_pred cccccccccccchHHHHHHHHHHHHHHhcCCHHH--HHHHHHCCCcHHHHHHHHHhhhhcccc-hhHHHHHHHHHHHHHH
Confidence 13589999999999996421110 111111 223444333333333322 3456777777777664
Q ss_pred H
Q 039062 535 R 535 (871)
Q Consensus 535 ~ 535 (871)
.
T Consensus 229 ~ 229 (233)
T 3tt9_A 229 Y 229 (233)
T ss_dssp C
T ss_pred h
Confidence 3
No 109
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.65 E-value=0.072 Score=49.28 Aligned_cols=148 Identities=14% Similarity=0.139 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHH-hhcCCChHHHHHHHHHHHHHhhccCCCccc
Q 039062 90 KTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLS-NVHQLPAHVKQATLETLGYLCEEVSPDVVE 168 (871)
Q Consensus 90 ~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~-~l~~~~~~~r~~al~~l~~l~~~~~~~~~~ 168 (871)
.+++......+..++..++|-.++.+++.. . .-++.++.+.. ...+++..+|+.+-.+++.++....++.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 345555556666777789999998877766 2 23889999998 6667789999999999999886321432
Q ss_pred hhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Q 039062 169 QDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISS 248 (871)
Q Consensus 169 ~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~ 248 (871)
.++.+..... |++..||..|+.....+... + .+ ....+.+++.+-.+..+++.-+|++....|..+.+
T Consensus 140 ------~l~~~~~W~~--d~n~~VRR~Ase~~rpW~~~-~-~~--k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 140 ------ALPIIDEWLK--SSNLHTRRAATEGLRIWTNR-P-YF--KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp ------THHHHHHHHH--CSSHHHHHHHHHHTCSGGGS-T-TT--TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHhc--CCCHHHHHHHHHhhHHHhcc-c-hh--hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 2334556666 89999999999987654322 1 12 22336688888888899999999999999999999
Q ss_pred HhHHhhHHhH
Q 039062 249 TYYEKLAPYM 258 (871)
Q Consensus 249 ~~~~~~~~~~ 258 (871)
..|+.+..++
T Consensus 208 ~~Pd~V~~~~ 217 (240)
T 3l9t_A 208 KFPDLVKIEL 217 (240)
T ss_dssp TCHHHHHHHH
T ss_pred hCHHHHHHHH
Confidence 9888776644
No 110
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=96.40 E-value=1.9 Score=48.93 Aligned_cols=291 Identities=7% Similarity=0.064 Sum_probs=145.4
Q ss_pred HHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHH
Q 039062 501 FQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLL 580 (871)
Q Consensus 501 ~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 580 (871)
++.+.+.+...+-+. +..+...+..++..++...|..-.-+++.++..+...++. +.. ..+ .....+
T Consensus 337 V~~l~p~~~~g~fSK---~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~----~~l--~e~----Hrl~~a 403 (799)
T 1vsy_4 337 VEIFLNIISLGSQNK---NPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLAD----QFI--NSR----HRIISS 403 (799)
T ss_dssp HHHHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTT----TTT--TCH----HHHHHH
T ss_pred HHHHHHHHHHHhCcC---CcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhcc----ccc--cch----hHHHHH
Confidence 344444444333333 3467788999999999988743334444444444444432 000 111 122347
Q ss_pred HHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhh---------------------
Q 039062 581 CGCLQVIIQKLGSSEPTKYVFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAG--------------------- 639 (871)
Q Consensus 581 ~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~--------------------- 639 (871)
+.++..++..+-... .+..++.+++..++..++.+|..--..++..+..++...+
T Consensus 404 L~~l~~~~r~lv~~~----~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~ 479 (799)
T 1vsy_4 404 LKQFTRVIRFIVMDK----LYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLV 479 (799)
T ss_dssp HHHHHTTHHHHTTST----TGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHH
T ss_pred HHHHHHHHHHHhcCc----ccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhh
Confidence 788888887776431 2667788888888877777666544556666666654221
Q ss_pred -------------------------------hhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccH
Q 039062 640 -------------------------------LDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYC 688 (871)
Q Consensus 640 -------------------------------~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 688 (871)
..|..++..++..++..+.+..+..+...-..++..+...+.+. .+
T Consensus 480 ~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~---if 556 (799)
T 1vsy_4 480 QQHFYHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDK---IF 556 (799)
T ss_dssp HHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHH---HH
T ss_pred hhhhhhhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHH---HH
Confidence 12344455566666666654333233222222233333333222 23
Q ss_pred HHHHHHHHHHccCCCCCCcCCchHHHH----HHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCC----ChhHHHHHH
Q 039062 689 DGIMTQLLKDLSSNQLHRSVKPPIFSC----FGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANV----DDDMTEYTN 760 (871)
Q Consensus 689 ~~i~~~l~~~l~~~~~~~~v~~~~~~~----l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~----d~~~~~~~~ 760 (871)
+..+..+.+.+.+...+...+.. ... ++.++..-++.+..+++.+...+...+.+.+...+. .+.+.+..+
T Consensus 557 ~~~l~k~~~fv~~n~~~~a~~~v-~~L~~~~~~a~~~~~P~~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w 635 (799)
T 1vsy_4 557 NYFASLLNRNFWSNDSFKEKDPN-YELVTIPLAALVRRNNGLSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVL 635 (799)
T ss_dssp HHHHHHHHHHHHSCSCCCSSSCC-THHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHH
Confidence 45555555555544322222222 222 566666666645556666655555444333211100 111111111
Q ss_pred HHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 039062 761 SLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLAD 823 (871)
Q Consensus 761 ~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~ 823 (871)
-+..+..++.. .+..+.+|-++++..+..++.+ -....+...+..++..+..
T Consensus 636 -----~l~iL~~~v~~-----~g~~lL~y~deL~~il~~~~~~-~k~~~~~~~~~~ll~~lL~ 687 (799)
T 1vsy_4 636 -----YLTALNDVLRN-----CHESLLEYSDELITFMKYLYDN-VTNPPLDVITSIVIHSALA 687 (799)
T ss_dssp -----HHHHHHHHHTT-----TGGGGGTTHHHHHHHHHHHHHS-CCCHHHHHHHTTHHHHHHH
T ss_pred -----HHHHHHHHHhc-----CcHHHHccHHHHHHHHHHHHHH-hcCcchHHHHHHHHHHHHH
Confidence 12233333333 3566888999999888777643 2344433444444444433
No 111
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=96.36 E-value=0.54 Score=47.77 Aligned_cols=266 Identities=14% Similarity=0.175 Sum_probs=141.3
Q ss_pred CCChhhHHHHHHHHHHhhcCC--ChhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchh
Q 039062 378 KPDWRQREAATYAFGSILEGP--SPDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQA 454 (871)
Q Consensus 378 ~~~~~~r~~a~~~l~~l~~~~--~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 454 (871)
++.|..-......+..+.++. .+...+.++ ...+-.++..+ +.++|+-|......|.++-..+.+ ...
T Consensus 95 e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lf-dSeDprER~~LktiLhrIY~kf~~--------~R~ 165 (403)
T 3fga_B 95 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELF-DSEDPRERDFLKTTLHRIYGKFLG--------LRA 165 (403)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHCHH--------HHH
T ss_pred ccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHhhhh--------hHH
Confidence 455666666555655555432 222233444 34566788889 999999998888888776655431 122
Q ss_pred hHHHHH-HHHHHhccC--ChHHHHHHHHHHHHHHhhcccCCCCCCCc-chHHHHHHHHHHhhccCChhhhhHHHHHHHHH
Q 039062 455 NCQQII-TVLLQSMKD--TPNVAEKACGALYFLAQGYEDVGPSSPLT-PFFQEIVQSLLTVTHREDAGESRLRTAAYETL 530 (871)
Q Consensus 455 ~~~~il-~~l~~~l~d--~~~v~~~a~~~l~~l~~~~~~~~~~~~l~-~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l 530 (871)
++...+ ..+.+.+.+ ...-.......++.++.++. -.+. .|..-+...++.+.+.... .........|+
T Consensus 166 ~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa-----~PLkeehk~fl~~vLlPLHk~~~~--~~y~~qL~ycv 238 (403)
T 3fga_B 166 YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA-----LPLKEEHKIFLLKVLLPLHKVKSL--SVYHPQLAYCV 238 (403)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCC-----SSCCHHHHHHHHHTTTGGGGSTTG--GGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccC-----CCchHHHHHHHHHHHHHHHcCCcc--hhhHHHHHHHH
Confidence 333222 222332222 11112234455666665542 1222 2322333333333332221 12233556666
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHH
Q 039062 531 NEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMG 610 (871)
Q Consensus 531 ~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~ 610 (871)
..++..-+. ....++..+++.|-.+ + +.. ....+.-+..+...+++. .+.+...+++.
T Consensus 239 ~qf~eKDp~----L~~~vi~~LLk~WP~t--------n-s~K----evlFL~Ele~iLe~~~~~-----~f~~i~~~lf~ 296 (403)
T 3fga_B 239 VQFLEKDST----LTEPVVMALLKYWPKT--------H-SPK----EVMFLNELEEILDVIEPS-----EFVKIMEPLFR 296 (403)
T ss_dssp HHHHHHCGG----GHHHHHHHHHHTCCSS--------C-HHH----HHHHHHHHHHHHTTCCHH-----HHHHHHHHHHH
T ss_pred HHHHHhCch----hHHHHHHHHHHhCCCC--------C-cHH----HHHHHHHHHHHHHhCCHH-----HHHHHHHHHHH
Confidence 666655443 2233344444444221 1 110 111344455555544432 37788899999
Q ss_pred HHHHHHcccCcchhhhHHHHHHH--HHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhh
Q 039062 611 LFLRVFACRSATVHEEAMLAIGA--LAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALE 681 (871)
Q Consensus 611 ~l~~~l~~~~~~~~~~a~~~l~~--l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~ 681 (871)
.+..++.+.+..|-+.|+..|.. ++....+.....+|.++|.+.+..++.-+..++..+..++..+...-+
T Consensus 297 ~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~ 369 (403)
T 3fga_B 297 QLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQ 369 (403)
T ss_dssp HHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCH
Confidence 99999999988898988877643 233233333344566666676666666566788888887776654433
No 112
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.30 E-value=0.32 Score=45.01 Aligned_cols=138 Identities=11% Similarity=0.087 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHH-hhcCCchHHHHHHHH
Q 039062 36 PSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLN-TLTSTVADARSTSSQ 114 (871)
Q Consensus 36 ~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~-~l~~~~~~vr~~~a~ 114 (871)
.+.+..+..-|.+ +...++|..|+-+|... . -.+ .+.+.+.. .-.+++..||..++.
T Consensus 69 ~~~~~~la~~L~~-~~~deVR~~Av~lLg~~-~----------------~~~----~~L~~ir~~va~D~~WrVre~lA~ 126 (240)
T 3l9t_A 69 GEYIKKLAFLAYQ-SDVYQVRMYAVFLFGYL-S----------------KDK----EILIFMRDEVSKDNNWRVQEVLAK 126 (240)
T ss_dssp HHHHHHHHHHHHT-CSSHHHHHHHHHHHHHT-T----------------TSH----HHHHHHHHTGGGCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CcchHHHHHHHHHHHhc-c----------------CcH----HHHHHHHHHhCCCCCccHHHHHHH
Confidence 4566667777777 44579999998877553 2 112 23333434 344667899999999
Q ss_pred HHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHH
Q 039062 115 VIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRL 194 (871)
Q Consensus 115 ~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~ 194 (871)
+++.++....|. ..++.+...+.+++..+|..|...+...+.. +. + ....+.+++.+-.... |++..||+
T Consensus 127 a~~~~~~~~~pe----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~-~-k~dp~~ll~iL~~L~~--D~s~yVrK 196 (240)
T 3l9t_A 127 AFDEFCKKIEYK----KALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PY-F-KENPNEAIRRIADLKE--DVSEYVRK 196 (240)
T ss_dssp HHHHHHHHHCTT----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TT-T-TTCHHHHHHHHHTTTT--CSCHHHHH
T ss_pred HHHHHHHhcCHH----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--ch-h-hcCHHHHHHHHHHhcC--ChHHHHHH
Confidence 999999743352 3678888999999999999998887543321 21 2 3445566666666555 99999999
Q ss_pred HHHHHHHHhhh
Q 039062 195 AATRALYNALS 205 (871)
Q Consensus 195 ~al~~l~~~~~ 205 (871)
+....|..+..
T Consensus 197 SVan~LrD~SK 207 (240)
T 3l9t_A 197 SVGNALRDISK 207 (240)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999988654
No 113
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=96.25 E-value=0.27 Score=50.89 Aligned_cols=263 Identities=14% Similarity=0.167 Sum_probs=139.7
Q ss_pred CCChhhHHHHHHHHHHhhcC--CChhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchh
Q 039062 378 KPDWRQREAATYAFGSILEG--PSPDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQA 454 (871)
Q Consensus 378 ~~~~~~r~~a~~~l~~l~~~--~~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 454 (871)
++.|..-......|..+.++ ..+.....++ ..++-.++..+ +.++|+-|......|.++-..+.+ ...
T Consensus 128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lf-dSeDpRERd~LktiLhrIY~Kf~~--------~R~ 198 (449)
T 2npp_B 128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELF-DSEDPRERDFLKTTLHRIYGKFLG--------LRA 198 (449)
T ss_dssp CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTT-TSSTHHHHHHHHHHHHHHHHSCTT--------THH
T ss_pred cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHHHH--------HHH
Confidence 45677777767667666654 2223334444 35677788899 999999999988888777665431 223
Q ss_pred hHHHHH-HHHHHhccC--ChHHHHHHHHHHHHHHhhcccCCCCCCCcc-hHHHHHHHHHHhhccCChhhhhHHHHHHHHH
Q 039062 455 NCQQII-TVLLQSMKD--TPNVAEKACGALYFLAQGYEDVGPSSPLTP-FFQEIVQSLLTVTHREDAGESRLRTAAYETL 530 (871)
Q Consensus 455 ~~~~il-~~l~~~l~d--~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~-~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l 530 (871)
++...+ ..+.+.+.+ ...-.......++.++.++. -.+.+ |..-+...++.+.+.... .........|+
T Consensus 199 ~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa-----~PLKeehk~fl~~vLlPLhk~~~l--~~y~~qL~ycv 271 (449)
T 2npp_B 199 YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA-----LPLKEEHKIFLLKVLLPLHKVKSL--SVYHPQLAYCV 271 (449)
T ss_dssp HHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCC-----SSCCHHHHHHHHHTTGGGGGSSCG--GGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccC-----CCCcHHHHHHHHHHHHHHHccchh--HHhHHHHHHHH
Confidence 333333 223333332 11112233455666655432 12222 222223333333332221 12233555666
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHH
Q 039062 531 NEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMG 610 (871)
Q Consensus 531 ~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~ 610 (871)
..++..-+. ....++..+++.|-.+ + +.. + ...+.-+..+...+++. .+.+...+++.
T Consensus 272 ~qf~eKDp~----L~~~vi~~LLk~WP~t--------n-s~K--e--vlFL~eleeile~~~~~-----ef~~i~~~lF~ 329 (449)
T 2npp_B 272 VQFLEKDST----LTEPVVMALLKYWPKT--------H-SPK--E--VMFLNELEEILDVIEPS-----EFVKIMEPLFR 329 (449)
T ss_dssp HHHHHHCGG----GHHHHHHHHHHTCCSS--------C-HHH--H--HHHHHHHHHHHTTCCHH-----HHHHHHHHHHH
T ss_pred HHHHhcCcH----hHHHHHHHHHHhCCCC--------C-chH--H--HHHHHHHHHHHHhCCHH-----HHHHHHHHHHH
Confidence 666655443 2233444444444221 1 110 1 11344445555444432 37788899999
Q ss_pred HHHHHHcccCcchhhhHHHHHHH--HHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHH
Q 039062 611 LFLRVFACRSATVHEEAMLAIGA--LAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICR 678 (871)
Q Consensus 611 ~l~~~l~~~~~~~~~~a~~~l~~--l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~ 678 (871)
.+..++++.+..|-+.|+..|.. +.....+.-...+|.++|.+.+..++.-+..++..+..++..+..
T Consensus 330 ~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 330 QLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp HHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 99999999988898988877643 222222222223345555555555555455788888887775533
No 114
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.98 E-value=0.92 Score=43.24 Aligned_cols=168 Identities=13% Similarity=0.157 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcc---
Q 039062 86 DANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEV--- 162 (871)
Q Consensus 86 ~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~--- 162 (871)
+++...++.+.++....+++..+|+..+..+...++.. + ..-+..++.|...+.++++.+.+.++.+...+....
T Consensus 47 dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-~-~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~ 124 (257)
T 3gs3_A 47 CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-V-ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQY 124 (257)
T ss_dssp TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-G-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888888777778899999999999998765 3 466889999999999888888888888776654331
Q ss_pred ---CCCc---cchh---hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchh----------cccC----------
Q 039062 163 ---SPDV---VEQD---HVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQA----------NFSN---------- 213 (871)
Q Consensus 163 ---~~~~---~~~~---~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~----------~~~~---------- 213 (871)
.+.. . .. .+..+-..++..+. ..+..+|..++|.+..++..... .++.
T Consensus 125 i~~~~~~~~~~-~~~W~~m~~lK~~Il~~~~--s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l 201 (257)
T 3gs3_A 125 LCSLMEPGDSA-EQAWNILSLIKAQILDMID--NENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLF 201 (257)
T ss_dssp HTTSSSCCHHH-HHHHHHHHHHHHHHHHGGG--SSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSS
T ss_pred HhcCCCCcchH-HHHHHHHHHHHHHHHHHHc--cCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcC
Confidence 0110 1 12 23444456777776 67899999999999998742210 1110
Q ss_pred -----hhhHHHHHHHHHHhhccC--cHHHHHHHHHHHHHHHHHhHHhhHHhH
Q 039062 214 -----DMERDYIMRVVCEATQSA--ELKIRQAAFECLVSISSTYYEKLAPYM 258 (871)
Q Consensus 214 -----~~~~~~i~~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~ 258 (871)
+.+...++..+...+.++ +.-...+++.+|..+++..|.+....+
T Consensus 202 ~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~rIl 253 (257)
T 3gs3_A 202 RREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMGAVV 253 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 112244677776665544 344567888999999998887765543
No 115
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.66 E-value=0.01 Score=56.57 Aligned_cols=186 Identities=17% Similarity=0.178 Sum_probs=116.3
Q ss_pred HhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 039062 99 NTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTA 178 (871)
Q Consensus 99 ~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~ 178 (871)
..+.++++.||..++..+ | + ..+...+.++++.+|..+...+ +. +.
T Consensus 57 ~ll~d~~~~VR~~AA~~l--------~----~---~~l~~L~~D~~~~VR~~aA~~L--------~~-----------~~ 102 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS--------P----V---EALTPLIRDSDEVVRRAVAYRL--------PR-----------EQ 102 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS--------C----G---GGGGGGTTCSSHHHHHHHHTTS--------CS-----------GG
T ss_pred HHhcCCCHHHHHHHHHhC--------C----H---HHHHHHccCcCHHHHHHHHHHC--------CH-----------HH
Confidence 346788899999888742 2 1 1255567888999998877542 21 12
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhH
Q 039062 179 VVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYM 258 (871)
Q Consensus 179 l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 258 (871)
+...+. |+++.||..+...+ + . ..+..+++++++.+|..+...+ .+.
T Consensus 103 L~~ll~--D~d~~VR~~aA~~l-------~----~--------~~L~~L~~D~d~~VR~~aA~~l------~~~------ 149 (244)
T 1lrv_A 103 LSALMF--DEDREVRITVADRL-------P----L--------EQLEQMAADRDYLVRAYVVQRI------PPG------ 149 (244)
T ss_dssp GGGTTT--CSCHHHHHHHHHHS-------C----T--------GGGGGGTTCSSHHHHHHHHHHS------CGG------
T ss_pred HHHHHc--CCCHHHHHHHHHhC-------C----H--------HHHHHHHcCCCHHHHHHHHHhc------CHH------
Confidence 345555 89999999988742 1 0 1234456788999999988732 111
Q ss_pred HHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCccc
Q 039062 259 QDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQDQ 338 (871)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~~~ 338 (871)
.+....++++..+|..+... +. +.++..+ . .|+
T Consensus 150 -----~l~~l~~D~d~~VR~~aa~~---l~------------------------------~~ll~~l----l---~D~-- 182 (244)
T 1lrv_A 150 -----RLFRFMRDEDRQVRKLVAKR---LP------------------------------EESLGLM----T---QDP-- 182 (244)
T ss_dssp -----GGGGTTTCSCHHHHHHHHHH---SC------------------------------GGGGGGS----T---TCS--
T ss_pred -----HHHHHHcCCCHHHHHHHHHc---CC------------------------------HHHHHHH----H---cCC--
Confidence 12234568888888877653 10 0011111 1 122
Q ss_pred ccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHc
Q 039062 339 EEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSAL 418 (871)
Q Consensus 339 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l 418 (871)
+|.+|..+...+ + .+.+...+.+++|.+|+++...++ ...+..|
T Consensus 183 ---d~~VR~aaa~~l-------~-------~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L 226 (244)
T 1lrv_A 183 ---EPEVRRIVASRL-------R-------GDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL 226 (244)
T ss_dssp ---SHHHHHHHHHHC-------C-------GGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC
T ss_pred ---CHHHHHHHHHhC-------C-------HHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc
Confidence 289998777642 2 134556688999999999876643 1234568
Q ss_pred cCCCcHHHHHHHHHHHH
Q 039062 419 TKDPNNHVKDTTAWTLG 435 (871)
Q Consensus 419 ~~d~~~~vr~~a~~~l~ 435 (871)
+|+++.||.++...||
T Consensus 227 -~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 227 -DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -CCCCHHHHHHHHCCC-
T ss_pred -cCCCHHHHHHHHHHhC
Confidence 9999999999876554
No 116
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.56 E-value=0.15 Score=45.85 Aligned_cols=156 Identities=13% Similarity=0.185 Sum_probs=96.2
Q ss_pred hhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHH
Q 039062 641 DFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIA 720 (871)
Q Consensus 641 ~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~ 720 (871)
+...|+..+...+.. ..|..|+..+.. ...+.+.+|-++..+.+.+.....+...-...+.....+.
T Consensus 8 Elq~yf~~It~a~~~--------~~r~~aL~sL~~-----D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl 74 (196)
T 4atg_A 8 ELQLYFDKILSMIKS--------DMKDIAIECLEK-----ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLI 74 (196)
T ss_dssp HHHHHHHHHHHHHTS--------TTHHHHHHHHHH-----CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--------HHHHHHHHHHhc-----CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 444566666665543 345566655543 2345555555555555444333112223333444444455
Q ss_pred HhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHH
Q 039062 721 LAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSM 800 (871)
Q Consensus 721 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~ 800 (871)
.+-.-.+.||+.+++|.+..++-.+. -.+ ..+|+-+.+.+..++...+.. ....-+.+...+.+.
T Consensus 75 ~N~~l~lepYlH~LipsvLtCll~k~----l~~------~~LRd~AA~lL~~I~~~~~~~-----y~~L~~RI~~tl~k~ 139 (196)
T 4atg_A 75 KNKHVFIDPYLHQILPSLLTCVIGKS----IVD------DDVRKMSADIVKYIYDTYSRS-----YKTLAPRVLKTLKGV 139 (196)
T ss_dssp HCTTCCCGGGHHHHHHHHHHHHHCTT----CCC------HHHHHHHHHHHHHHHHHHTTT-----STTHHHHHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHHHHHhcc----cCH------HHHHHHHHHHHHHHHHHhCcc-----CchHHHHHHHHHHHH
Confidence 54455678999999999999986541 011 179999999999999997754 222345899999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHhH
Q 039062 801 YMEKDMDELVMKTAIGLLGDLADT 824 (871)
Q Consensus 801 ~~~~~~~~~~r~~a~~~l~~i~~~ 824 (871)
+.|++.+-...--|+..+..++..
T Consensus 140 l~dp~~~l~t~YGAi~GL~~lG~~ 163 (196)
T 4atg_A 140 WMDPNRSEDSQYGALYCLSILSKN 163 (196)
T ss_dssp HTCTTSCHHHHHHHHHHHHHHCHH
T ss_pred HcCCCCChHHHHHHHHHHHHhHHH
Confidence 988777777776666666655543
No 117
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.27 E-value=0.16 Score=45.69 Aligned_cols=95 Identities=8% Similarity=0.019 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcc--hhHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHccC
Q 039062 624 HEEAMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEE--YQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSS 701 (871)
Q Consensus 624 ~~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 701 (871)
-...+....++...-.-.+.||+.+++|.++.++-...- ..+|..|..+++.+++.++......-+.++..+.+.+.+
T Consensus 63 L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~d 142 (196)
T 4atg_A 63 LKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMD 142 (196)
T ss_dssp HHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcC
Confidence 344455555555444446789999999999988754321 169999999999999999866555568899999998887
Q ss_pred CCCCCcCCchHHHHHHH
Q 039062 702 NQLHRSVKPPIFSCFGD 718 (871)
Q Consensus 702 ~~~~~~v~~~~~~~l~~ 718 (871)
+..+....-.|+.++..
T Consensus 143 p~~~l~t~YGAi~GL~~ 159 (196)
T 4atg_A 143 PNRSEDSQYGALYCLSI 159 (196)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHH
Confidence 74333333344444443
No 118
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.18 E-value=1.5 Score=44.46 Aligned_cols=171 Identities=11% Similarity=0.062 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcc-----
Q 039062 88 NVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEV----- 162 (871)
Q Consensus 88 ~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~----- 162 (871)
+...++...++..-.+++..||+..+..|...+... . +..+.+++.|..++.++++.+.+.++.+...+....
T Consensus 59 sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~-~-el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 59 TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD-I-ELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-G-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677888888888999999999999998765 3 356889999999999888888887777776654321
Q ss_pred -CCCc--cchh---hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchh-------------cccC----------
Q 039062 163 -SPDV--VEQD---HVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQA-------------NFSN---------- 213 (871)
Q Consensus 163 -~~~~--~~~~---~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~-------------~~~~---------- 213 (871)
.+.. .... .+..+-..++..+. ..+..||..++|.+..++..... .++.
T Consensus 137 ~~~~~~~~~e~~W~~m~~lK~~Il~~~d--s~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L 214 (386)
T 3o2t_A 137 KSRVISELQEACWDMVSAMAGDIILLLD--SDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYI 214 (386)
T ss_dssp HC-CCCHHHHHHHHHHHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSS
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcC
Confidence 0110 0012 23444456777666 57899999999999998742210 1110
Q ss_pred -----hhhHHHHHHHHHHhhccC--cHHHHHHHHHHHHHHHHHhHHhhHHhHHHHH
Q 039062 214 -----DMERDYIMRVVCEATQSA--ELKIRQAAFECLVSISSTYYEKLAPYMQDIY 262 (871)
Q Consensus 214 -----~~~~~~i~~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~ 262 (871)
+.+...++..++..+..+ ++-....++.+|..+++..|.+....++.+.
T Consensus 215 ~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~aL~ 270 (386)
T 3o2t_A 215 QYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYE 270 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 112245777777777642 3455677889999999988887766555544
No 119
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=94.95 E-value=1.9 Score=42.22 Aligned_cols=122 Identities=7% Similarity=0.059 Sum_probs=91.3
Q ss_pred hhhhHHHHHHHHHHHHcccCcchhh-hHHHHHHHHHHHhhhhhhhhhHhHHHHHHhhh----cC--CcchhHHHHHHHHH
Q 039062 601 FMQYADQIMGLFLRVFACRSATVHE-EAMLAIGALAYAAGLDFAKYMPDFYKYLEMGL----QN--FEEYQVCAVTVGVV 673 (871)
Q Consensus 601 ~~~~~~~i~~~l~~~l~~~~~~~~~-~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l----~~--~~~~~v~~~a~~~l 673 (871)
...+.+++++.++.=.+.+.+..|+ .++.+++.++..++..+.++++.++..+..+- +. .+-++.|..-+..|
T Consensus 67 ~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL 146 (321)
T 1w9c_A 67 AENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLL 146 (321)
T ss_dssp HHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHH
Confidence 4456677777777666666677776 57899999999999999999999888776542 21 34578999999999
Q ss_pred HHHHHHhhhccc----ccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhc
Q 039062 674 GDICRALEEKIL----PYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG 724 (871)
Q Consensus 674 ~~l~~~~~~~~~----~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~ 724 (871)
..+..++-..+. +.+..+++.++=.+++. ..++...++.++-.+..+..
T Consensus 147 ~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~--~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 147 QAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHT--MRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHHHHHh
Confidence 999887653322 23456777777778877 67888889988888887774
No 120
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=93.73 E-value=5.6 Score=38.97 Aligned_cols=125 Identities=10% Similarity=0.091 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhh--
Q 039062 525 AAYETLNEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFM-- 602 (871)
Q Consensus 525 ~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-- 602 (871)
..+.++.+++...+..+.+.++.+++.+++---+-+ ..|-+.+|+.|......+..+...+-.. +.
T Consensus 93 eVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI------~~df~eyPehR~~Ff~LL~ai~~~cF~a------l~~l 160 (321)
T 1w9c_A 93 EVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMI------NKDFEEYPEHRTNFFLLLQAVNSHCFPA------FLAI 160 (321)
T ss_dssp HHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH------SSTTTCSHHHHHHHHHHHHHHHHHCTTH------HHHS
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH------hcccccChHHHHHHHHHHHHHHHHhHHH------HHcC
Confidence 578888888888887777777766666554321111 1122234556666777777777654322 22
Q ss_pred --hhHHHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhh--hh-----hhhhHhHHHHHHhhhcCCc
Q 039062 603 --QYADQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGL--DF-----AKYMPDFYKYLEMGLQNFE 661 (871)
Q Consensus 603 --~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~--~~-----~~~l~~i~~~l~~~l~~~~ 661 (871)
+....+++.++-.+++++.++-+.++..+..+...... ++ ..|+-.++..++..+.|+.
T Consensus 161 p~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~ 228 (321)
T 1w9c_A 161 PPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTS 228 (321)
T ss_dssp CHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 23455666777778888888999999888888776642 22 2244456666666666654
No 121
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=93.47 E-value=8.1 Score=39.99 Aligned_cols=232 Identities=13% Similarity=0.123 Sum_probs=118.3
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCC-c-hHHHHHHHHhhcC-CChHHHHHHHHHHHHHhhccCCCccch
Q 039062 93 IKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQ-W-PELIVSLLSNVHQ-LPAHVKQATLETLGYLCEEVSPDVVEQ 169 (871)
Q Consensus 93 i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~-~-~~ll~~L~~~l~~-~~~~~r~~al~~l~~l~~~~~~~~~~~ 169 (871)
....|+..+.++|+.-|..+-.++-.|.....+... . ..+-+.+.+.+.. ..-.-....|++++.+.... .--+..
T Consensus 163 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGf-a~PLKe 241 (449)
T 2npp_B 163 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF-ALPLKE 241 (449)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSC-CSSCCH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhcc-CCCCcH
Confidence 344567777778877777777777666554322100 0 0111111111111 11122334677777777766 322323
Q ss_pred hhHHHHHHHHHhhhcCCCCCHHH-HHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Q 039062 170 DHVNKILTAVVQGMNASEMNNDV-RLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISS 248 (871)
Q Consensus 170 ~~~~~i~~~l~~~l~~~~~~~~v-r~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~ 248 (871)
.|..-+...++...+. ..... ...-..|+..+++-.+ .....++..++..---.+..-...-+.-+..+++
T Consensus 242 ehk~fl~~vLlPLhk~--~~l~~y~~qL~ycv~qf~eKDp------~L~~~vi~~LLk~WP~tns~KevlFL~eleeile 313 (449)
T 2npp_B 242 EHKIFLLKVLLPLHKV--KSLSVYHPQLAYCVVQFLEKDS------TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILD 313 (449)
T ss_dssp HHHHHHHHTTGGGGGS--SCGGGTHHHHHHHHHHHHHHCG------GGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcc--chhHHhHHHHHHHHHHHHhcCc------HhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Confidence 4443344444544442 11111 1112233333332111 1224455555554433344444445555666665
Q ss_pred H-hHHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHH
Q 039062 249 T-YYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLE 327 (871)
Q Consensus 249 ~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 327 (871)
. .+..+.+.+..++..+-.++.+++..+...|+.+|..--- ...+...-..++|.+..
T Consensus 314 ~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i---------------------~~li~~n~~~IlPii~p 372 (449)
T 2npp_B 314 VIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYI---------------------MSLISDNAAKILPIMFP 372 (449)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHH---------------------HHHHHTTHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHH---------------------HHHHHhchhhhHHhhHH
Confidence 4 4566777777888888899999999999999999854210 01223333345566655
Q ss_pred HHhcccCCcccccccc--cHhHHHHHHHHHHHHHc
Q 039062 328 ILLKQEEDQDQEEGAW--NIAMAGGTCLGLVARTV 360 (871)
Q Consensus 328 ~l~~~~~d~~~~~~~~--~~r~~a~~~l~~l~~~~ 360 (871)
.+-.... .-| +++..+..++..+.+.-
T Consensus 373 ~L~~~s~------~HWn~~V~~la~~vlk~l~e~d 401 (449)
T 2npp_B 373 SLYRNSK------THWNKTIHGLIYNALKLFMEMN 401 (449)
T ss_dssp HHTSCTT------CCSSTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH------HhcCHHHHHHHHHHHHHHHHHC
Confidence 5432211 226 57777888887666543
No 122
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=93.35 E-value=5.7 Score=37.81 Aligned_cols=115 Identities=13% Similarity=0.137 Sum_probs=86.7
Q ss_pred CCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhc
Q 039062 127 KQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSF 206 (871)
Q Consensus 127 ~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 206 (871)
.-+|++++.+++...+++..+|.-....+...+... .......++.+...++ |.++.|.+.++.+..++...
T Consensus 49 ~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k------~~l~~~~l~~L~~Ll~--d~d~~V~K~~I~~~~~iY~~ 120 (257)
T 3gs3_A 49 ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK------VELLPHVINVVSMLLR--DNSAQVIKRVIQACGSIYKN 120 (257)
T ss_dssp GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC------GGGHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHH
Confidence 477999999999877788889999999998888664 3556777888888887 78999999999998887542
Q ss_pred ----chhccc----ChhhHH---HHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Q 039062 207 ----AQANFS----NDMERD---YIMRVVCEATQSAELKIRQAAFECLVSISST 249 (871)
Q Consensus 207 ----~~~~~~----~~~~~~---~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 249 (871)
.-.... .+..|+ .+...+.....+.+..+|..+++.+..++-.
T Consensus 121 ~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 121 GLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp HHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence 111111 122333 3566677777888999999999999988843
No 123
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=92.72 E-value=16 Score=41.40 Aligned_cols=325 Identities=9% Similarity=0.070 Sum_probs=175.3
Q ss_pred hHHhhhhhhHHHHHHHHhcccCCcccccccccHhHHHHHHHHHHHHHcC---CCcccchHHHHHhhhcC---CChhhHHH
Q 039062 313 FIKQALPALVPLLLEILLKQEEDQDQEEGAWNIAMAGGTCLGLVARTVG---DDIVPLVIPFIEENIAK---PDWRQREA 386 (871)
Q Consensus 313 ~~~~~~~~l~~~l~~~l~~~~~d~~~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~l~~~l~~~l~~---~~~~~r~~ 386 (871)
-.+.++..+.|.+...+-.. + -.+...+..+++.++-..| +.++|.++..+-..+.. .+...-.+
T Consensus 332 ~~~~fV~~l~p~~~~g~fSK--~-------~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~ 402 (799)
T 1vsy_4 332 CHEEIVEIFLNIISLGSQNK--N-------PDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIIS 402 (799)
T ss_dssp HHHHHHHHHHHHHHHHHTCS--S-------HHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcC--C-------cchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHH
Confidence 44455555666665544322 1 1456677899999999888 88999998888887766 55666677
Q ss_pred HHHHHHHhhcCCC-hhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccC-CCCCCccc--hhhHHHHHHH
Q 039062 387 ATYAFGSILEGPS-PDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGS-TIGTPIIT--QANCQQIITV 462 (871)
Q Consensus 387 a~~~l~~l~~~~~-~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~-~~~~~~~~--~~~~~~il~~ 462 (871)
++.++..++...- ......|+..++..+++++ +-+++.--..++..+..++..++-. .+...... .....+.+..
T Consensus 403 aL~~l~~~~r~lv~~~~yr~hl~~lL~l~LpgI-D~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~ 481 (799)
T 1vsy_4 403 SLKQFTRVIRFIVMDKLYRVHITNVLSMLVSKL-DMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQ 481 (799)
T ss_dssp HHHHHHTTHHHHTTSTTGGGHHHHHHHHHHHTC-CSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhh
Confidence 7888877765421 1345678999999999999 6667766677888888888876521 00000000 0001111222
Q ss_pred HHHhccC---------ChHH-HHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHH
Q 039062 463 LLQSMKD---------TPNV-AEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNE 532 (871)
Q Consensus 463 l~~~l~d---------~~~v-~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~ 532 (871)
-+..+++ +... ....|.+ ...+..++..+++.++..+.+.. +..+-.....++..
T Consensus 482 ~~~~l~~~~~~~~~~~d~~~~~~~~~~s-------------T~~f~~~v~~f~drvf~llen~~--Ee~l~~~l~~~~~~ 546 (799)
T 1vsy_4 482 HFYHIKCGESSKTFRVDDELLNNAFKAS-------------TTVFQSMLKVYVEKIFQLVDVDL--EDSLVTKINQTTMI 546 (799)
T ss_dssp HHHHHHTTCCSSSCCCCTTHHHHHHHHH-------------TSTHHHHHHHHHHHHHHHTTSCC--CTHHHHHHHHHHHH
T ss_pred hhhhhccccccccccccHHHHHHHHHHH-------------HhhHHHHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHH
Confidence 2221111 0111 1111111 23455567777777777776532 33343445555555
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHH-HHHHHHHHHHhCCCCCchhhhhhhHHHHHHH
Q 039062 533 VVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLL-CGCLQVIIQKLGSSEPTKYVFMQYADQIMGL 611 (871)
Q Consensus 533 l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~ 611 (871)
+...+.+ +.+..++..+.+.+.+.....+ .+. + +.+ .--+.+++..-+. .+..+++.+...
T Consensus 547 l~~~lS~---~if~~~l~k~~~fv~~n~~~~a--~~~------v-~~L~~~~~~a~~~~~P~------~~~~~~p~l~~~ 608 (799)
T 1vsy_4 547 LQESMDD---KIFNYFASLLNRNFWSNDSFKE--KDP------N-YELVTIPLAALVRRNNG------LSKELVRTLLFH 608 (799)
T ss_dssp HHHTBCH---HHHHHHHHHHHHHHHSCSCCCS--SSC------C-THHHHHHHHHHHHHCGG------GHHHHHHHHHHH
T ss_pred HHHhCCH---HHHHHHHHHHHHHHHHhhhhhH--HHH------H-HHHHHHHHHHHHHhCHH------HHHHHHHHHHHH
Confidence 5555553 3444444444444433221000 000 0 001 0002344444222 266666666666
Q ss_pred HHHHHccc------Ccch--hhh----HHHHHHHHHHHhhhhhhhhhHhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHH
Q 039062 612 FLRVFACR------SATV--HEE----AMLAIGALAYAAGLDFAKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRA 679 (871)
Q Consensus 612 l~~~l~~~------~~~~--~~~----a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~ 679 (871)
+....+++ ..++ ++. -+.+++.++...|..+.+|-+.++..+...+.+.....+...+...+..+...
T Consensus 609 i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL~y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL~s 688 (799)
T 1vsy_4 609 IKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCHESLLEYSDELITFMKYLYDNVTNPPLDVITSIVIHSALAT 688 (799)
T ss_dssp HHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTGGGGGTTHHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHHH
T ss_pred HHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHccHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 66444333 1112 333 34578888888888899999998888776664322222223455555555444
Q ss_pred h
Q 039062 680 L 680 (871)
Q Consensus 680 ~ 680 (871)
+
T Consensus 689 L 689 (799)
T 1vsy_4 689 L 689 (799)
T ss_dssp H
T ss_pred h
Confidence 3
No 124
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=92.47 E-value=3 Score=42.23 Aligned_cols=217 Identities=16% Similarity=0.196 Sum_probs=113.7
Q ss_pred CCChhhHHHHHHHHHHhhcC--CChhhhhHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchh
Q 039062 378 KPDWRQREAATYAFGSILEG--PSPDKLLHIV-NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQA 454 (871)
Q Consensus 378 ~~~~~~r~~a~~~l~~l~~~--~~~~~~~~~l-~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 454 (871)
++.|..-......+..+.++ ..+.....++ ...+-.++..+ +.++|+-|......+.++-..+.+ ...
T Consensus 140 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lf-dSeDpRERd~LktiLhrIY~Kf~~--------~R~ 210 (392)
T 2jak_A 140 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELF-DSEDPRERDFLKTTLHRIYGKFLG--------LRA 210 (392)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCGG--------GHH
T ss_pred ccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHHHH--------HHH
Confidence 45566655555555555543 2222233344 34677788889 999999999888888777655431 223
Q ss_pred hHHHHH-HHHHHhccC--ChHHHHHHHHHHHHHHhhcccCCCCCCCcc-hHHHHHHHHHHhhccCChhhhhHHHHHHHHH
Q 039062 455 NCQQII-TVLLQSMKD--TPNVAEKACGALYFLAQGYEDVGPSSPLTP-FFQEIVQSLLTVTHREDAGESRLRTAAYETL 530 (871)
Q Consensus 455 ~~~~il-~~l~~~l~d--~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~-~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l 530 (871)
++...+ ..+.+.+.+ ...-.......++.++.++. -.+.+ +..-+...++.+.+.... .........|+
T Consensus 211 ~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa-----~PLKeehk~Fl~~vLlPLhk~~~l--~~y~~qL~ycv 283 (392)
T 2jak_A 211 YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA-----LPLKEEHKIFLLKVLLPLHKVKSL--SVYHPQLAYCV 283 (392)
T ss_dssp HHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCC-----SSCCHHHHHHHHHTTGGGGTSGGG--GGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccC-----CCCcHHHHHHHHHHhHhhccCCcH--HHhHHHHHHHH
Confidence 333333 333444332 11112234455666665542 12222 222223333333322211 11223455566
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhhHHHHHH
Q 039062 531 NEVVRSSTDETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYVFMQYADQIMG 610 (871)
Q Consensus 531 ~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~ 610 (871)
..++..-+. ....++..+++.|-.+. +. .+ ...+.-+..+...+++. .+.+...+++.
T Consensus 284 ~qf~eKDp~----L~~~vi~~LLk~WP~tn-----s~--Ke------vlFL~eleeiLe~~~~~-----~f~~i~~~lF~ 341 (392)
T 2jak_A 284 VQFLEKDST----LTEPVVMALLKYWPKTH-----SP--KE------VMFLNELEEILDVIEPS-----EFVKIMEPLFR 341 (392)
T ss_dssp HHHHHHCGG----GHHHHHHHHHHSSCSSC-----CT--TH------HHHHHHHHHHHHTCCHH-----HHHHHHHHHHH
T ss_pred HHHHhcCch----hHHHHHHHHHHhCCCCC-----ch--HH------HHHHHHHHHHHHhCCHH-----HHHHHHHHHHH
Confidence 555554332 22333444444443221 01 11 11445555666555543 37788899999
Q ss_pred HHHHHHcccCcchhhhHHHHHH
Q 039062 611 LFLRVFACRSATVHEEAMLAIG 632 (871)
Q Consensus 611 ~l~~~l~~~~~~~~~~a~~~l~ 632 (871)
.+..++++.+..|-+.|+..|.
T Consensus 342 ~la~ci~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 342 QLAKCVSSPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHHHTCSSHHHHHHHHGGGG
T ss_pred HHHHHHcCCcHHHHHHHHHHhC
Confidence 9999999988889898887764
No 125
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=91.88 E-value=12 Score=38.01 Aligned_cols=93 Identities=12% Similarity=0.168 Sum_probs=63.3
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHH--HHhhhhccCCCCCCccchhhHHHHHHHHH
Q 039062 387 ATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLG--RIFEFLHGSTIGTPIITQANCQQIITVLL 464 (871)
Q Consensus 387 a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~--~~~~~~~~~~~~~~~~~~~~~~~il~~l~ 464 (871)
-+.-+..+.+...+..+......++..+..++ .++|-.|-..|+.... .+...+. ......++.++|.+.
T Consensus 271 FL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci-~S~hfqVAErAL~~wnNe~i~~li~-------~n~~~IlPii~p~L~ 342 (403)
T 3fga_B 271 FLNELEEILDVIEPSEFVKIMEPLFRQLAKCV-SSPHFQVAERALYYWNNEYIMSLIS-------DNAAKILPIMFPSLY 342 (403)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH-TCSCHHHHHHHHGGGGCHHHHHHHH-------TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHhccHHHHHHHH-------HhHHHHHHHHHHHHH
Confidence 34456777777767778888888999999999 9999999888776531 1222221 112345555666666
Q ss_pred HhccCC--hHHHHHHHHHHHHHHhh
Q 039062 465 QSMKDT--PNVAEKACGALYFLAQG 487 (871)
Q Consensus 465 ~~l~d~--~~v~~~a~~~l~~l~~~ 487 (871)
+....+ +.|+..+..++..+.+.
T Consensus 343 ~~~~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 343 RNSKTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp HTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHh
Confidence 655554 57898999988888653
No 126
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=91.85 E-value=0.048 Score=51.96 Aligned_cols=164 Identities=16% Similarity=0.160 Sum_probs=103.5
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHH
Q 039062 97 LLNTLTSTVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKIL 176 (871)
Q Consensus 97 ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~ 176 (871)
+..++.++++.||..++.. .+ + +.|...+.++++.+|..+...+ .++.
T Consensus 79 l~~L~~D~~~~VR~~aA~~--------L~----~---~~L~~ll~D~d~~VR~~aA~~l-------~~~~---------- 126 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYR--------LP----R---EQLSALMFDEDREVRITVADRL-------PLEQ---------- 126 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTT--------SC----S---GGGGGTTTCSCHHHHHHHHHHS-------CTGG----------
T ss_pred HHHHccCcCHHHHHHHHHH--------CC----H---HHHHHHHcCCCHHHHHHHHHhC-------CHHH----------
Confidence 4567788999999998864 23 1 2456667888999998877742 1111
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHH
Q 039062 177 TAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAP 256 (871)
Q Consensus 177 ~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 256 (871)
+...++ |+++.||..+...+ .. +.+..+++++++.+|..+...+. .
T Consensus 127 --L~~L~~--D~d~~VR~~aA~~l------~~-------------~~l~~l~~D~d~~VR~~aa~~l~-------~---- 172 (244)
T 1lrv_A 127 --LEQMAA--DRDYLVRAYVVQRI------PP-------------GRLFRFMRDEDRQVRKLVAKRLP-------E---- 172 (244)
T ss_dssp --GGGGTT--CSSHHHHHHHHHHS------CG-------------GGGGGTTTCSCHHHHHHHHHHSC-------G----
T ss_pred --HHHHHc--CCCHHHHHHHHHhc------CH-------------HHHHHHHcCCCHHHHHHHHHcCC-------H----
Confidence 223345 89999999998731 11 12335667899999999988511 1
Q ss_pred hHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCchhhhHHhhhhhhHHHHHHHHhcccCCc
Q 039062 257 YMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNSDIPCFYFIKQALPALVPLLLEILLKQEEDQ 336 (871)
Q Consensus 257 ~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~d~ 336 (871)
+.+...+++++..+|..+...+ .. +.+... + .|
T Consensus 173 ------~ll~~ll~D~d~~VR~aaa~~l---~~-----------------------------~~L~~L----l----~D- 205 (244)
T 1lrv_A 173 ------ESLGLMTQDPEPEVRRIVASRL---RG-----------------------------DDLLEL----L----HD- 205 (244)
T ss_dssp ------GGGGGSTTCSSHHHHHHHHHHC---CG-----------------------------GGGGGG----G----GC-
T ss_pred ------HHHHHHHcCCCHHHHHHHHHhC---CH-----------------------------HHHHHH----H----cC-
Confidence 1222356788999998877541 00 001111 1 12
Q ss_pred ccccccccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHH
Q 039062 337 DQEEGAWNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFG 392 (871)
Q Consensus 337 ~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~ 392 (871)
..|.+|..+...++ .+.+... .+++|.+|+++...+|
T Consensus 206 ----~d~~VR~~aa~~l~--------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 206 ----PDWTVRLAAVEHAS--------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp ----SSHHHHHHHHHHSC--------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred ----CCHHHHHHHHHcCC--------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 23999988877753 2455555 8999999999865443
No 127
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=91.67 E-value=9.1 Score=37.64 Aligned_cols=151 Identities=10% Similarity=0.112 Sum_probs=93.3
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhH-HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhccc
Q 039062 134 VSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHV-NKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFS 212 (871)
Q Consensus 134 ~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~ 212 (871)
..+++.+.+.+...+..++.-|..+...- .+.. .+.. ..=+..++.... +.+.+....++.++..++.+....-.
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa-~EFI~~~GL~~Li~vi~--~~~gN~q~Y~L~AL~~LM~~v~Gm~g 196 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQED-KDLV-PEFVHSEGLSCLIRVGA--AADHNYQSYILRALGQLMLFVDGMLG 196 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHH-HHHHHTTHHHHHHHHHT--TSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHH-HHHHHhccHHHHHHHHH--hcChHHHHHHHHHHHHHHhccccccc
Confidence 44445555666666777888888865432 1211 1111 111345556665 67889999999999999887432110
Q ss_pred ChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhHHhhHHhHHH-----------HHHHHHHHhh---CCChhHHH
Q 039062 213 NDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYEKLAPYMQD-----------IYSITAKAVR---EDEEPVAL 278 (871)
Q Consensus 213 ~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-----------l~~~~~~~~~---~~~~~~~~ 278 (871)
.. ..+.+++-+..++.+.+..+.+.|++.|..++...+....-.... .+..++..++ +.+.++..
T Consensus 197 vv-s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~ 275 (339)
T 3dad_A 197 VV-AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV 275 (339)
T ss_dssp HH-HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred hh-CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence 00 126678888888888889999999999999987743222111111 1334444565 56778888
Q ss_pred HHHHHHHHHHH
Q 039062 279 QAIEFWSSICD 289 (871)
Q Consensus 279 ~a~~~~~~l~~ 289 (871)
.|+..+..+..
T Consensus 276 ~amtLIN~lL~ 286 (339)
T 3dad_A 276 YTVTLINKTLA 286 (339)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88877766544
No 128
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=91.33 E-value=12 Score=36.80 Aligned_cols=189 Identities=8% Similarity=0.120 Sum_probs=121.4
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCC--------CCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCC
Q 039062 93 IKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQ--------KQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSP 164 (871)
Q Consensus 93 i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~--------~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~ 164 (871)
+...|+..|..=+-+-|+.++++++.+.+...+. ...|+++..|+.....++-....+. .|...+..
T Consensus 79 ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~--mLRecir~--- 153 (341)
T 1upk_A 79 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGI--MLRECIRH--- 153 (341)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHH--HHHHHHTS---
T ss_pred HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHH--HHHHHHHh---
Confidence 3334555555556677777777777776653221 1368899999998876653221111 11111110
Q ss_pred Cccchh-hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchh---cccChhhHHHHHHHHHHhhccCcHHHHHHHH
Q 039062 165 DVVEQD-HVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQA---NFSNDMERDYIMRVVCEATQSAELKIRQAAF 240 (871)
Q Consensus 165 ~~~~~~-~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~---~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~ 240 (871)
+.+..- -....+-.+++.+. .++-+|-.-|+.++..++..... .|.. ...+.++...-.++++++-=.|.+++
T Consensus 154 e~la~~iL~~~~f~~fF~yv~--~~~FdiasDAf~TfkelLt~Hk~lvaefL~-~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVE--MSTFDIASDAFATFKDLLTRHKLLSAEFLE-QHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTT--CSSHHHHHHHHHHHHHHHHSSHHHHHHHHH-HTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhc--CCCchHHHHHHHHHHHHHhccHHHHHHHHH-HhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 000000 00011224556666 68889999999988887653221 1111 12356777777889999999999999
Q ss_pred HHHHHHHHH--hHHhhHHhHH--HHHHHHHHHhhCCChhHHHHHHHHHHHHHH
Q 039062 241 ECLVSISST--YYEKLAPYMQ--DIYSITAKAVREDEEPVALQAIEFWSSICD 289 (871)
Q Consensus 241 ~~l~~l~~~--~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 289 (871)
+.|++++-. ....+..|+. .-+.+++..+++....++..|...+..++-
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 999999976 5667778875 578888999999999999999998877765
No 129
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=90.80 E-value=30 Score=41.14 Aligned_cols=129 Identities=13% Similarity=0.051 Sum_probs=80.8
Q ss_pred HHHHhhcC----CchHHHHHHHHHHHHHHhhhcCC------CCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCC
Q 039062 96 CLLNTLTS----TVADARSTSSQVIAKVAGIELPQ------KQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPD 165 (871)
Q Consensus 96 ~ll~~l~~----~~~~vr~~~a~~l~~i~~~~~~~------~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 165 (871)
.+..++.+ .++.+|..+..+++.+++..... ..-+.+.+.+.+.+...+...+..++.+|+.+-- +
T Consensus 395 ~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~---p- 470 (1056)
T 1lsh_A 395 YARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ---P- 470 (1056)
T ss_dssp HHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC---G-
T ss_pred HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC---h-
Confidence 34444444 34688999999999888765321 1234566666667777777788888999987632 1
Q ss_pred ccchhhHHHHHHHHHhhhc-----CCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhh--ccCcHHHHHH
Q 039062 166 VVEQDHVNKILTAVVQGMN-----ASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEAT--QSAELKIRQA 238 (871)
Q Consensus 166 ~~~~~~~~~i~~~l~~~l~-----~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l--~~~~~~~~~~ 238 (871)
..++.+.+++. ..+....+|.+|+.+|..+....+ ..+-+++++.. ...++++|..
T Consensus 471 --------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p---------~~v~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 --------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP---------RKVQEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp --------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH---------HHHHHHHHHHHHCTTSCHHHHHH
T ss_pred --------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch---------HHHHHHHHHHhcCCCCChHHHHH
Confidence 12233334432 113467899999999888653211 23444455544 3468899999
Q ss_pred HHHHHHH
Q 039062 239 AFECLVS 245 (871)
Q Consensus 239 a~~~l~~ 245 (871)
|+..|..
T Consensus 534 A~~~Lm~ 540 (1056)
T 1lsh_A 534 SCIVFFE 540 (1056)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988753
No 130
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=90.02 E-value=17 Score=43.08 Aligned_cols=84 Identities=15% Similarity=0.191 Sum_probs=51.6
Q ss_pred ChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHH
Q 039062 380 DWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQI 459 (871)
Q Consensus 380 ~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 459 (871)
..++|.+|+.+|..++... ++.+.+.+ ++.... ...+++||.+|+..|-+ ..+. ..+
T Consensus 491 ~~rvr~aAi~ALr~~~~~~-p~~v~~il---~~i~~n---~~e~~EvRiaA~~~Lm~---t~P~-------------~~~ 547 (1056)
T 1lsh_A 491 STRVQAEAIMALRNIAKRD-PRKVQEIV---LPIFLN---VAIKSELRIRSCIVFFE---SKPS-------------VAL 547 (1056)
T ss_dssp CHHHHHHHHHTTTTGGGTC-HHHHHHHH---HHHHHC---TTSCHHHHHHHHHHHHH---TCCC-------------HHH
T ss_pred chHHHHHHHHHHHHhhhhc-hHHHHHHH---HHHhcC---CCCChHHHHHHHHHHHH---HCcC-------------HHH
Confidence 3578899999999988753 33333322 222211 45788999999988533 2221 245
Q ss_pred HHHHHHhccC--ChHHHHHHHHHHHHHHh
Q 039062 460 ITVLLQSMKD--TPNVAEKACGALYFLAQ 486 (871)
Q Consensus 460 l~~l~~~l~d--~~~v~~~a~~~l~~l~~ 486 (871)
+..+...+.. +..|.....+.|.++.+
T Consensus 548 l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 548 VSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 5555555553 56777777777777754
No 131
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=89.57 E-value=19 Score=36.45 Aligned_cols=115 Identities=10% Similarity=0.073 Sum_probs=86.6
Q ss_pred CCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhc
Q 039062 127 KQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSF 206 (871)
Q Consensus 127 ~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 206 (871)
.-.+++++.+++...+++..+|......+...|... .+....+++.+...+. |.++.|.+.++.+..++...
T Consensus 59 sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~------~el~~~~l~~L~~LL~--d~d~~V~K~~I~~~tslYpl 130 (386)
T 3o2t_A 59 TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD------IELLLKLIANLNMLLR--DENVNVVKKAILTMTQLYKV 130 (386)
T ss_dssp GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC------GGGHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHH
Confidence 477899999999888889999999999999888754 3456777888888887 78999999999998887532
Q ss_pred ----chhccc-C---hhhHH---HHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Q 039062 207 ----AQANFS-N---DMERD---YIMRVVCEATQSAELKIRQAAFECLVSISST 249 (871)
Q Consensus 207 ----~~~~~~-~---~~~~~---~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 249 (871)
...... . +..|+ .+...++..+.+.+..+|..+++++..++-.
T Consensus 131 ~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~ 184 (386)
T 3o2t_A 131 ALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVT 184 (386)
T ss_dssp HHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 111111 1 22333 3566677777788899999999999988853
No 132
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=81.78 E-value=22 Score=36.00 Aligned_cols=178 Identities=12% Similarity=0.078 Sum_probs=101.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--hHHHHHH-----HHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHH
Q 039062 5 VTQVLLNAQSIDGTVRKHAEESLKQFQEQN--LPSFLLS-----LSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFE 77 (871)
Q Consensus 5 l~~~l~~~~s~~~~~r~~A~~~L~~~~~~~--~~~~~~~-----l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~ 77 (871)
+.+++..+.|+|+..|..-...|..++..- .-.|+.. +.+-+-......++- -.+-++...++
T Consensus 176 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIa-eLLeilgsIIn--------- 245 (392)
T 2jak_A 176 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIA-ELLEILGSIIN--------- 245 (392)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHH-HHHHHHHHHHH---------
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHh---------
Confidence 567888889999999999999998776641 1122211 111111111111111 11112222222
Q ss_pred Hhhhcc-CCCHHHHHHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHH
Q 039062 78 LVQRWL-SLDANVKTQIKTCLLNTLTSTV-ADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETL 155 (871)
Q Consensus 78 ~~~~~~-~~~~~~~~~i~~~ll~~l~~~~-~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l 155 (871)
.+. -+-++.+..+...|+.+..... ...-.+++.|+..+...+ | .--..++..|+..-.-.+......-+.-+
T Consensus 246 ---gfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD-p-~L~~~vi~~LLk~WP~tns~KevlFL~el 320 (392)
T 2jak_A 246 ---GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-S-TLTEPVVMALLKYWPKTHSPKEVMFLNEL 320 (392)
T ss_dssp ---TCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHC-G-GGHHHHHHHHHHSSCSSCCTTHHHHHHHH
T ss_pred ---ccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcC-c-hhHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 111 2456777777777787777765 566678888888888776 3 12233444444433333322223345556
Q ss_pred HHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 039062 156 GYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRAL 200 (871)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l 200 (871)
..+.+..+++.+ +.....++..+..++. .++-+|-..|+...
T Consensus 321 eeiLe~~~~~~f-~~i~~~lF~~la~ci~--S~hfqVAErAL~~w 362 (392)
T 2jak_A 321 EEILDVIEPSEF-VKIMEPLFRQLAKCVS--SPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHTCCHHHH-HHHHHHHHHHHHHHHT--CSSHHHHHHHHGGG
T ss_pred HHHHHhCCHHHH-HHHHHHHHHHHHHHHc--CCcHHHHHHHHHHh
Confidence 666666645555 5667777888888888 67888888777544
No 133
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=78.51 E-value=53 Score=32.26 Aligned_cols=188 Identities=13% Similarity=0.156 Sum_probs=112.8
Q ss_pred CCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhhhcCC--C
Q 039062 50 DKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQ--K 127 (871)
Q Consensus 50 ~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~--~ 127 (871)
..+.+.|.-++.++.+.+++........ ..|-. .+..+...|+.+-.++ .+.-.++..+-..++++.-. -
T Consensus 89 ~L~fE~RKd~~~if~~llr~~~~~~~p~--v~Yl~----~~peil~~L~~gYe~~--diAl~~G~mLRecir~e~la~~i 160 (341)
T 1upk_A 89 LIDFEGKKDVAQIFNNILRRQIGTRTPT--VEYIC----TQQNILFMLLKGYESP--EIALNCGIMLRECIRHEPLAKII 160 (341)
T ss_dssp GSCHHHHHHHHHHHHHHHTCCBTTBCHH--HHHHH----TCTHHHHHHHHGGGST--TTHHHHHHHHHHHHTSHHHHHHH
T ss_pred cCCchhhccHHHHHHHHHhcccCCCCch--hHHHH----cCHHHHHHHHHhhccc--hhHhHHHHHHHHHHHhHHHHHHH
Confidence 4467788888877777665432111000 01110 1234455555555444 34444444444444332000 0
Q ss_pred CchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcc---CCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhh
Q 039062 128 QWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEV---SPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNAL 204 (871)
Q Consensus 128 ~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~---~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~ 204 (871)
-+.+.+-.+++.++.++-++-.-|+.++..+.... ..+.+ ..+.+.++......+. +++--.|.-+++.|+.++
T Consensus 161 L~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL-~~nyd~Ff~~y~~Ll~--S~NYVTkRQSlKLLgelL 237 (341)
T 1upk_A 161 LWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFL-EQHYDRFFSEYEKLLH--SENYVTKRQSLKLLGELL 237 (341)
T ss_dssp HHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHH-HHTHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHH-HHhHHHHHHHHHHHhc--CCcchhHHHHHHHHHHHH
Confidence 01222335567778888888777888888776542 12334 5677788888888777 689999999999999987
Q ss_pred hcchhcccChh---hHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Q 039062 205 SFAQANFSNDM---ERDYIMRVVCEATQSAELKIRQAAFECLVSISST 249 (871)
Q Consensus 205 ~~~~~~~~~~~---~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 249 (871)
.- +.++..-. ....-+..++.++.++...++-.|+..+.-++.+
T Consensus 238 ld-r~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 238 LD-RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HS-GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred hC-chHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 42 11111000 0144678888999999999999999999988865
No 134
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=76.85 E-value=60 Score=31.95 Aligned_cols=149 Identities=13% Similarity=0.054 Sum_probs=93.9
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHHhhhcCCCCc-hHH-----HHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCcc-c
Q 039062 96 CLLNTLTSTVADARSTSSQVIAKVAGIELPQKQW-PEL-----IVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVV-E 168 (871)
Q Consensus 96 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~~~-~~l-----l~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~-~ 168 (871)
.++..|.+.+...++.+-.-+..+...+ ..| +++ +..|+..+...+.+....+|.+|..++... +.+ +
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D---~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v--~Gm~g 196 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQED---KDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV--DGMLG 196 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTC---TTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH--HHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcc---hHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc--ccccc
Confidence 4455566666544555555555544332 122 222 456677777778888889999999998763 111 0
Q ss_pred hhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccCh-hhHH--------HHHHHHHHhhc---cCcHHHH
Q 039062 169 QDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSND-MERD--------YIMRVVCEATQ---SAELKIR 236 (871)
Q Consensus 169 ~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~-~~~~--------~i~~~l~~~l~---~~~~~~~ 236 (871)
.-..+.++..+...+. .....|-+.|++.|..++.+.+..+..- .... ..++.+...++ +.|.+++
T Consensus 197 vvs~~~fI~~lyslv~--s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq 274 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCA--SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELL 274 (339)
T ss_dssp HHHCHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHH
T ss_pred hhCCHHHHHHHHHHHc--CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHH
Confidence 1113556667777777 5778999999999999998865433110 0000 01455666665 6789999
Q ss_pred HHHHHHHHHHHHHhH
Q 039062 237 QAAFECLVSISSTYY 251 (871)
Q Consensus 237 ~~a~~~l~~l~~~~~ 251 (871)
..++..+..++...+
T Consensus 275 ~~amtLIN~lL~~ap 289 (339)
T 3dad_A 275 VYTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999887744
No 135
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=75.01 E-value=16 Score=31.95 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh--HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhh
Q 039062 606 DQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM--PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEE 682 (871)
Q Consensus 606 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 682 (871)
...+..|..-++..++.++-.|+..+..+++.+|..|...+ ..++..+.+.+....+..|+..++.++..-...++.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34555666667777778888899999999999998876544 346666666665445668999999988887777663
No 136
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=72.80 E-value=23 Score=29.90 Aligned_cols=74 Identities=11% Similarity=-0.035 Sum_probs=55.9
Q ss_pred chHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH--HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhhc
Q 039062 367 LVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV--NVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 367 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l--~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~~ 442 (871)
.....|...+.+.++.+...|+.++..++.+|+ ..+...+ ..++..+...+ ...++.|+..++..+...+..+.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG-~~f~~evas~~Fl~el~~l~-~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCG-KIFHLEVCSRDFASEVSNVL-NKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-HHHHHHHSSHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcC-HHHHHHHhhHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhC
Confidence 455667778888888899999999999999997 4443333 34555556666 66788999999999888887775
No 137
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=70.70 E-value=37 Score=28.95 Aligned_cols=77 Identities=12% Similarity=0.013 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh--HhHHHHHHhhhcC-----CcchhHHHHHHHHHHHHHH
Q 039062 606 DQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM--PDFYKYLEMGLQN-----FEEYQVCAVTVGVVGDICR 678 (871)
Q Consensus 606 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~-----~~~~~v~~~a~~~l~~l~~ 678 (871)
...+..+..-+++.++.+.-.|+..+..+++.+|..|...+ ..++..+.+.+.+ .....|+...+.++..-..
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 34566666777777888888999999999999998885544 3466666666653 2356899999999988877
Q ss_pred Hhhh
Q 039062 679 ALEE 682 (871)
Q Consensus 679 ~~~~ 682 (871)
.++.
T Consensus 127 ~f~~ 130 (149)
T 3g2s_A 127 GLPE 130 (149)
T ss_dssp HCTT
T ss_pred HhCC
Confidence 7653
No 138
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=69.94 E-value=38 Score=29.75 Aligned_cols=77 Identities=14% Similarity=0.044 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh--HhHHHHHHhhhcC-----CcchhHHHHHHHHHHHHHH
Q 039062 606 DQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM--PDFYKYLEMGLQN-----FEEYQVCAVTVGVVGDICR 678 (871)
Q Consensus 606 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~-----~~~~~v~~~a~~~l~~l~~ 678 (871)
...+..|.+-+++.++.++-.|+..+..+++.+|..|...+ ..++..+.+.+.. .....|+..++.++..-..
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34566677777777888899999999999999998886544 3466666666642 2346899999999998887
Q ss_pred Hhhh
Q 039062 679 ALEE 682 (871)
Q Consensus 679 ~~~~ 682 (871)
.++.
T Consensus 129 ~f~~ 132 (171)
T 1juq_A 129 ALPE 132 (171)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 7764
No 139
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=69.72 E-value=1.9e+02 Score=34.63 Aligned_cols=160 Identities=10% Similarity=-0.007 Sum_probs=96.9
Q ss_pred hcccccHHHHHHHHHHHccCCCCCCcCCchHHHHHHHHHHhhccChHHhHHHHHHHHHHHHhhcccCCCCChhHHHHHHH
Q 039062 682 EKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNS 761 (871)
Q Consensus 682 ~~~~~~~~~i~~~l~~~l~~~~~~~~v~~~~~~~l~~i~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~d~~~~~~~~~ 761 (871)
.-+..|++.++...-.++.+. +..++..+......+-..+.. -|=..++..+....... . ..+
T Consensus 392 ~vL~~~f~siL~La~~Ll~S~--~~~v~~Fg~~lY~~lF~~fd~---~~qqeVl~~Lv~hi~sg------~------~~e 454 (1323)
T 3s4w_B 392 LVLKDICPSILLLAQTLFHSQ--DQRIILFGSLLYKYAFKFFDT---YCQQEVVGALVTHVCSG------T------EAE 454 (1323)
T ss_dssp HHHTTSHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHC------C------HHH
T ss_pred HHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhccc---hhHHHHHHHHHhhhcCC------C------cHH
Confidence 456788888888887777766 455555555544444444421 22356777777666543 1 112
Q ss_pred HHHHHHHHHHHHhhhccCCccccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHH
Q 039062 762 LRNGILEAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKD 841 (871)
Q Consensus 762 ~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~ 841 (871)
+ ..+++.+..++.. .++.+.||.. ++.-++..+.+- ....+|+ .+..++.++-.-+.+..-.+.+. +..
T Consensus 455 V-d~ALdvL~~L~~~-----~~~~l~~~a~-~l~giLD~l~~l-~~~QiRk-lf~iL~~laf~~~~~~~~~i~dd--l~i 523 (1323)
T 3s4w_B 455 V-DTALDVLLELIVL-----NASAMRLNAA-FVKGILDYLENM-SPQQIRK-IFCILSTLAFSQQPGTSNHIQDD--MHL 523 (1323)
T ss_dssp H-HHHHHHHHHHHHH-----CHHHHHHTHH-HHHGGGGGGGGC-CHHHHHH-HHHHHHHHHHHHCSSCCCHHHHH--HHH
T ss_pred H-HHHHHHHHHHHhc-----CHHHHhHHHH-HHHHHHHhhcCC-CHHHHHH-HHHHHHHHHcCCCCCcchhhHHh--HHH
Confidence 2 3477777777765 3455666544 444444444442 3345555 59999998866554422223332 556
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHHHHHh
Q 039062 842 FLNECLSSKDHMIKESAEWARLAINKAI 869 (871)
Q Consensus 842 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (871)
++..-.++.+..++..++-|.-.+-+.+
T Consensus 524 vIRKQLs~~~~~~KriGIIGav~~v~~~ 551 (1323)
T 3s4w_B 524 VIRKQLSSTVFKYKLIGIIGAVTMAGIM 551 (1323)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCchhhhhhhHHHHHHHHHHH
Confidence 7777777889999998888877766554
No 140
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=69.24 E-value=92 Score=32.44 Aligned_cols=75 Identities=9% Similarity=0.117 Sum_probs=47.6
Q ss_pred HHHHHHHhhhcCC--------CCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 039062 174 KILTAVVQGMNAS--------EMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVS 245 (871)
Q Consensus 174 ~i~~~l~~~l~~~--------~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~ 245 (871)
.++..+.+.+.++ +.++.+-.-|+.=++.++.+.+..-..- ..-.....+++++.++|+++|..|+.|+..
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~-~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQk 473 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVL-DKTGGKADIMELLNHSDSRVKYEALKATQA 473 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHH-HHHSHHHHHHHHTSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHH-HHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4455555555421 1356666667777777766544221100 012246778899999999999999999998
Q ss_pred HHHH
Q 039062 246 ISST 249 (871)
Q Consensus 246 l~~~ 249 (871)
++.+
T Consensus 474 lm~~ 477 (480)
T 1ho8_A 474 IIGY 477 (480)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
No 141
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=68.35 E-value=16 Score=30.98 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=50.6
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhH
Q 039062 175 ILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYY 251 (871)
Q Consensus 175 i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 251 (871)
.+..+...+. +.++.+...|+..+-.++...+..|..+.....+++.+...+...++.++..++..+......+.
T Consensus 43 a~rai~Krl~--~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 43 CLRSIMRRVN--HKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 3445555666 67888888899988888877666554222223455555555555678999999988888776654
No 142
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=68.23 E-value=29 Score=29.61 Aligned_cols=77 Identities=12% Similarity=0.009 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh--HhHHHHHHhhhcC-----CcchhHHHHHHHHHHHHHH
Q 039062 606 DQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM--PDFYKYLEMGLQN-----FEEYQVCAVTVGVVGDICR 678 (871)
Q Consensus 606 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~-----~~~~~v~~~a~~~l~~l~~ 678 (871)
...+..+..-+++.++.+.-.|+..+..+++.+|..|...+ ..++..+.+.+.. .....|+...+.++..-..
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34566666677777888899999999999999999886555 4577777777753 1356899999998888777
Q ss_pred Hhhh
Q 039062 679 ALEE 682 (871)
Q Consensus 679 ~~~~ 682 (871)
.++.
T Consensus 117 ~f~~ 120 (148)
T 1mhq_A 117 WFPE 120 (148)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 7653
No 143
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=67.31 E-value=36 Score=29.09 Aligned_cols=77 Identities=10% Similarity=0.104 Sum_probs=56.2
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhc------cCcHHHHHHHHHHHHHHH
Q 039062 174 KILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQ------SAELKIRQAAFECLVSIS 247 (871)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~------~~~~~~~~~a~~~l~~l~ 247 (871)
..+..|...+. +.++.+...|+..+-.++...+..|..+-....|++-+...+. ..++.++..+++.+....
T Consensus 48 ~a~ral~krl~--~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 48 LATRLLAHKIQ--SPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 34455666777 7899999999999999988777666433223456666666664 357899999999999888
Q ss_pred HHhHH
Q 039062 248 STYYE 252 (871)
Q Consensus 248 ~~~~~ 252 (871)
..++.
T Consensus 126 ~~f~~ 130 (149)
T 3g2s_A 126 VGLPE 130 (149)
T ss_dssp HHCTT
T ss_pred HHhCC
Confidence 77654
No 144
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=66.36 E-value=31 Score=30.33 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=55.0
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhc------cCcHHHHHHHHHHHHHHH
Q 039062 174 KILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQ------SAELKIRQAAFECLVSIS 247 (871)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~------~~~~~~~~~a~~~l~~l~ 247 (871)
..+..|...++ +.++.++..|+..+-.++...+..|..+.....+++-+...+. ..+..|+..+++.+....
T Consensus 50 ~A~ral~krl~--~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 50 IAVRLLAHKIQ--SPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 34455667777 6899999999999999988776655433222456666666654 246899999999999888
Q ss_pred HHhHH
Q 039062 248 STYYE 252 (871)
Q Consensus 248 ~~~~~ 252 (871)
..++.
T Consensus 128 ~~f~~ 132 (171)
T 1juq_A 128 MALPE 132 (171)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 76543
No 145
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=66.07 E-value=24 Score=29.61 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=57.0
Q ss_pred HHHHHHHHH---cCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHc---------
Q 039062 351 TCLGLVART---VGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSAL--------- 418 (871)
Q Consensus 351 ~~l~~l~~~---~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l--------- 418 (871)
..+..|++. .....+..++++|.+.+++.+|.+++-++.+|..+..... +.+...+..=... ++.+
T Consensus 30 ylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r~~~~~-Ik~l~~F~g~~dp 107 (140)
T 1vdy_A 30 YKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQRNSVA-VRNLFHYKGHPDP 107 (140)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHTTHH-HHTTTTCCCCCCT
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHHHhHHH-HHHHHhcCCCCCc
Confidence 344444443 2234568899999999999999999999999999987653 5555444332222 2222
Q ss_pred --cCCCcHHHHHHHHHHHHHHhh
Q 039062 419 --TKDPNNHVKDTTAWTLGRIFE 439 (871)
Q Consensus 419 --~~d~~~~vr~~a~~~l~~~~~ 439 (871)
.+|+...||..|-.++.-+..
T Consensus 108 ~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 108 LKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhHHHHHHHHHHHHHHhC
Confidence 023346789988877666544
No 146
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=65.31 E-value=88 Score=29.09 Aligned_cols=153 Identities=9% Similarity=-0.022 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHH
Q 039062 17 GTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTC 96 (871)
Q Consensus 17 ~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 96 (871)
++.|+-|-+..++.......+ +..++.-+.+ +..-+.|.+|..+++...+ .++++....+..
T Consensus 41 P~lR~laK~~~k~~~~~~~~~-~~~~~~~L~~-~~~~E~r~~ai~~l~~~~k---------------~~~~~~l~~~~~- 102 (232)
T 3jxy_A 41 PERRQLLKDIIQIHTLPDQKD-FQIIIRELWD-LPEREFQAAALDIMQKYKK---------------HINETHIPFLEE- 102 (232)
T ss_dssp HHHHHHHHHHHHHHCCCCGGG-HHHHHHHHHT-SSBHHHHHHHHHHHHHTGG---------------GCCGGGHHHHHH-
T ss_pred HHHHHHHHHHHHhccccchhh-HHHHHHHHhc-CcHHHHHHHHHHHHHHHHH---------------hCCHHHHHHHHH-
Confidence 344555555544433221112 2123333444 3456789888888864322 234444444432
Q ss_pred HHHhhcCCchHHHHHH-HHHHHHHHhhhcCCCCchH-HHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHH
Q 039062 97 LLNTLTSTVADARSTS-SQVIAKVAGIELPQKQWPE-LIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNK 174 (871)
Q Consensus 97 ll~~l~~~~~~vr~~~-a~~l~~i~~~~~~~~~~~~-ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 174 (871)
.+. .-.+..+.-.. ..+++.+.... | + +.+.+...+.+++.-.|..|+..+-. . .. ......
T Consensus 103 ~l~--~~~nWd~~D~~a~~~~g~~~~~~-p-----~~~~~~l~~W~~s~~~w~rR~ai~~~l~---~----~~-~~d~~~ 166 (232)
T 3jxy_A 103 LIV--TKSWWDSVDSIVPTFLGDIFLKH-P-----ELISAYIPKWIASDNIWLQRAAILFQLK---Y----KQ-KMDEEL 166 (232)
T ss_dssp HHT--SSCCHHHHHHHTTTHHHHHHHHC-G-----GGGGGTHHHHHHSSCHHHHHHHHHTTTT---C----GG-GCCHHH
T ss_pred HHc--cCCChHHHHHhhHHHHHHHHHHC-H-----HHHHHHHHHHhcCCchHHHHHHHHHHHH---H----Hh-CCCHHH
Confidence 222 23445555444 46677776653 3 3 45667788889998888888766411 1 11 233445
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHhhh
Q 039062 175 ILTAVVQGMNASEMNNDVRLAATRALYNALS 205 (871)
Q Consensus 175 i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (871)
++..+...+. |++.-||.+..-+|..+..
T Consensus 167 ~~~~i~~~~~--d~~~yV~kAvgW~Lr~~~k 195 (232)
T 3jxy_A 167 LFWIIGQLHS--SKEFFIQKAIGWVLREYAK 195 (232)
T ss_dssp HHHHHHHHTT--CCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC--CHHHHHHHHHHHHHHHHHh
Confidence 5555556666 8999999999999988643
No 147
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=65.18 E-value=11 Score=31.64 Aligned_cols=87 Identities=13% Similarity=0.148 Sum_probs=53.5
Q ss_pred HHHHHhhhcC--CCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccch---hhHHHHHHHHHhhhcC-----
Q 039062 116 IAKVAGIELP--QKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQ---DHVNKILTAVVQGMNA----- 185 (871)
Q Consensus 116 l~~i~~~~~~--~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~---~~~~~i~~~l~~~l~~----- 185 (871)
+..|+...+. ...+.++++.|...+.+.++.++..||.+|.+++..- .+.|-. .+.. ++..+.++--.
T Consensus 32 m~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~G-s~~f~~~~r~~~~-~Ik~l~~F~g~~dp~~ 109 (140)
T 1vdy_A 32 LEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKS-GSEFRREMQRNSV-AVRNLFHYKGHPDPLK 109 (140)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHTTH-HHHTTTTCCCCCCTTT
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhC-CHHHHHHHHHhHH-HHHHHHhcCCCCCccc
Confidence 3445444322 1246899999999999999999999999999999876 333311 1111 12222211111
Q ss_pred -CCCCHHHHHHHHHHHHHhh
Q 039062 186 -SEMNNDVRLAATRALYNAL 204 (871)
Q Consensus 186 -~~~~~~vr~~al~~l~~~~ 204 (871)
.+....||..|=+++..+.
T Consensus 110 G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 110 GDALNKAVRETAHETISAIF 129 (140)
T ss_dssp SSCHHHHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHHHHHHh
Confidence 1234678888888777654
No 148
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=64.38 E-value=44 Score=30.86 Aligned_cols=77 Identities=8% Similarity=0.068 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh--HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhh
Q 039062 606 DQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM--PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEE 682 (871)
Q Consensus 606 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 682 (871)
...+..|..-++..++.++-.|+..|..+++..|..|...+ ..++..+...+.+.....|+..++.++..-...+..
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 35566667777777888899999999999999998775443 235555555555444568999999998888877764
No 149
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=63.85 E-value=43 Score=31.07 Aligned_cols=77 Identities=10% Similarity=0.036 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcccCcchhhhHHHHHHHHHHHhhhhhhhhh--HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhh
Q 039062 606 DQIMGLFLRVFACRSATVHEEAMLAIGALAYAAGLDFAKYM--PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEE 682 (871)
Q Consensus 606 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~ 682 (871)
...+..|..-++..++.+.-.|+..|..+++..|..|...+ ..++..|.+.+....+..|+...+.++..-...+..
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 45666777777888888999999999999999998775543 345555555554444568999999999988887764
No 150
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=62.85 E-value=44 Score=28.47 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=54.0
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhcc------CcHHHHHHHHHHHHHHHHH
Q 039062 176 LTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQS------AELKIRQAAFECLVSISST 249 (871)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~------~~~~~~~~a~~~l~~l~~~ 249 (871)
+..+...++ +.++.+...|+..+-.++...+..|..+-....+++-+...+.. .++.++..+++.+......
T Consensus 40 ~rai~krl~--~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 40 PWLLAHKIQ--SPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHT--CSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 334555566 78899999999999999887776664332235677777776653 4789999999999888876
Q ss_pred hHH
Q 039062 250 YYE 252 (871)
Q Consensus 250 ~~~ 252 (871)
++.
T Consensus 118 f~~ 120 (148)
T 1mhq_A 118 FPE 120 (148)
T ss_dssp CTT
T ss_pred cCC
Confidence 543
No 151
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=62.37 E-value=27 Score=30.43 Aligned_cols=76 Identities=17% Similarity=0.129 Sum_probs=49.9
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHHHHHhH
Q 039062 174 KILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQS-AELKIRQAAFECLVSISSTYY 251 (871)
Q Consensus 174 ~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~ 251 (871)
..+..|...++ +.++.++..|+..+-.++...+..|..+.-...+++.+...+.. .++.++..+++.+......+.
T Consensus 52 eA~ral~krl~--~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 52 DCLKAIMKRVN--HKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 33445566666 67889999999999998887665554222223455555444433 567888888888877766543
No 152
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=61.92 E-value=1.1e+02 Score=36.75 Aligned_cols=167 Identities=11% Similarity=0.046 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHH---------------HHHHHHHHHhhcCCchHHHHHHHHHHH
Q 039062 53 VDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVK---------------TQIKTCLLNTLTSTVADARSTSSQVIA 117 (871)
Q Consensus 53 ~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~---------------~~i~~~ll~~l~~~~~~vr~~~a~~l~ 117 (871)
...|..|-.++|+.++.. .+..+.. ..+....-.++.+.++.|+.-++....
T Consensus 359 ~~~rk~aE~ilrkkI~~G-------------~it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~ 425 (1323)
T 3s4w_B 359 TQTKKGVEKLLRNKIQSD-------------CIQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYK 425 (1323)
T ss_dssp HHHHHHHHHHHHHHHTTT-------------CSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcC-------------CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 467888888998888641 1222211 122222223466777889988888888
Q ss_pred HHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 039062 118 KVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAAT 197 (871)
Q Consensus 118 ~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al 197 (871)
.+++.. ....-.+++..|...+.+++......|+.+|..++... ++.+ .....++..++..+.+ =...++|+. +
T Consensus 426 ~lF~~f-d~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~-~~~l--~~~a~~l~giLD~l~~-l~~~QiRkl-f 499 (1323)
T 3s4w_B 426 YAFKFF-DTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLN-ASAM--RLNAAFVKGILDYLEN-MSPQQIRKI-F 499 (1323)
T ss_dssp HHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC-HHHH--HHTHHHHHGGGGGGGG-CCHHHHHHH-H
T ss_pred HHHHhc-cchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcC-HHHH--hHHHHHHHHHHHhhcC-CCHHHHHHH-H
Confidence 888764 21123688999999888887777888999999998876 5443 2234455566666662 234556644 7
Q ss_pred HHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHH
Q 039062 198 RALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAA 239 (871)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a 239 (871)
..+..+.-..+.. ......+.+.-.+...+.+++.+.++..
T Consensus 500 ~iL~~laf~~~~~-~~~~i~ddl~ivIRKQLs~~~~~~KriG 540 (1323)
T 3s4w_B 500 CILSTLAFSQQPG-TSNHIQDDMHLVIRKQLSSTVFKYKLIG 540 (1323)
T ss_dssp HHHHHHHHHHCSS-CCCHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHcCCCCC-cchhhHHhHHHHHHHHHhCCchhhhhhh
Confidence 7777655322211 1112335555555566666666655433
No 153
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=57.79 E-value=1.2e+02 Score=28.35 Aligned_cols=139 Identities=13% Similarity=0.146 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhhccCCCc---cchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHH
Q 039062 149 QATLETLGYLCEEVSPDV---VEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVC 225 (871)
Q Consensus 149 ~~al~~l~~l~~~~~~~~---~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~ 225 (871)
-.|+..|+.++.+ |+. |-..+++-.+-.++.......+-..+|.+++..++.++...+.....--...++++...
T Consensus 74 cnaLaLlQcvAsh--petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 74 CNALALLQCVASH--PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHC--TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHcC--cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 4566677777654 331 11334444433333333321234579999999999988643221100001134788888
Q ss_pred HhhccCcHHHHHHHHHHHHHHHHHh---------HHhhHHhHHHHHH-HHHHHhhCCChhHHHHHHHHHHHHHHH
Q 039062 226 EATQSAELKIRQAAFECLVSISSTY---------YEKLAPYMQDIYS-ITAKAVREDEEPVALQAIEFWSSICDE 290 (871)
Q Consensus 226 ~~l~~~~~~~~~~a~~~l~~l~~~~---------~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~a~~~~~~l~~~ 290 (871)
..++.++.-.+..|.-.+..+.... ++.+... ..++. .+....+++.....+..+.+...++++
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av-~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHV-AMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHH-HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHH-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 8888888888888888888877542 1222211 12222 222333566667777777777777664
No 154
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=56.35 E-value=1.2e+02 Score=27.81 Aligned_cols=153 Identities=8% Similarity=-0.063 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCCCCChhHHHHHHHHHHcccccchhhhHHHHhhhccCCCHHHHHHHHHH
Q 039062 17 GTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAKEQHRKFELVQRWLSLDANVKTQIKTC 96 (871)
Q Consensus 17 ~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 96 (871)
++.|+-|-+..+..... +...-..++.-+.. +..-+.|.+|+.++...-+ .+.++....
T Consensus 35 P~lR~laK~~~k~~~~~-~~~~~~~~~~~L~~-s~~~E~r~la~~~l~~~~~---------------~~~~~~l~~---- 93 (220)
T 2b6c_A 35 PERQALSKQLLKESHTW-PKEKLCQEIEAYYQ-KTEREYQYVAIDLALQNVQ---------------RFSLEEVVA---- 93 (220)
T ss_dssp HHHHHHTHHHHHHHTTS-CHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHTGG---------------GCCHHHHHH----
T ss_pred HHHHHHHHHHHHHhccC-cccchHHHHHHHHc-CchhHHHHHHHHHHHHHHh---------------hCCHHHHHH----
Confidence 56677776655442111 11111134444554 3467889999988865432 122322221
Q ss_pred HHHhhcC-CchHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHH
Q 039062 97 LLNTLTS-TVADARSTSSQVIAKVAGIELPQKQWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKI 175 (871)
Q Consensus 97 ll~~l~~-~~~~vr~~~a~~l~~i~~~~~~~~~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i 175 (871)
+-..+.. .+..+.-..|.+++.++... | ..+.+.+...+.+++.-.|..|+..+- +- ....+.+.+
T Consensus 94 ~~~~l~~~~nWd~~D~~a~~~~~~~~~~-~----~~~~~~i~~W~~s~~~w~rR~ai~~~l-------~~-~~~~~~~~~ 160 (220)
T 2b6c_A 94 FKAYVPQKAWWDSVDAWRKFFGSWVALH-L----TELPTIFALFYGAENFWNRRVALNLQL-------ML-KEKTNQDLL 160 (220)
T ss_dssp GGGGTTTTCSHHHHHHHHHHHHHHHHHS-G----GGHHHHHHHHTTCSSHHHHHHHHHTTT-------TC-GGGCCHHHH
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHHHC-h----HHHHHHHHHHHcCCCHHHHHHHHHHHH-------HH-HHCCCHHHH
Confidence 1122333 34566666666677776542 2 236677889999999888888877541 11 113445556
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHhhh
Q 039062 176 LTAVVQGMNASEMNNDVRLAATRALYNALS 205 (871)
Q Consensus 176 ~~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 205 (871)
++.+-..+. |++.-||.+..-.|..+..
T Consensus 161 ~~i~~~~~~--d~~~yV~kavgW~Lr~~~k 188 (220)
T 2b6c_A 161 KKAIIYDRT--TEEFFIQKAIGWSLRQYSK 188 (220)
T ss_dssp HHHHHHTTT--CCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCC--ChHHHHHHHHHHHHHHHHh
Confidence 665555666 8999999999999988653
No 155
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=53.19 E-value=1e+02 Score=26.01 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=50.7
Q ss_pred chHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHH
Q 039062 789 YAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAE 859 (871)
Q Consensus 789 ~~~~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~ 859 (871)
+.+.|+..+...+.. ..++-+..++-++.+|++..|..+.+++... +.+++..+-...|...|....
T Consensus 40 ~a~~Iv~~i~~~i~k--~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~--l~~~f~~~~~~~d~~~r~k~~ 106 (144)
T 1sz9_A 40 CAQYFVDAIESRIEK--CMPKQKLYAFYALDSICKNVGSPYTIYFSRN--LFNLYKRTYLLVDNTTRTKLI 106 (144)
T ss_dssp GHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTCTTHHHHHHTT--HHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCHhhHHHHHHHHHHHHHhccchHHHHHHHH--HHHHHHHHHHhCCHHHHHHHH
Confidence 566788888777664 4688899999999999999998888777764 667777666566776665543
No 156
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=52.41 E-value=2.2e+02 Score=29.62 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCC--------CCCHHHHHHHHHHHHHHHhHhccc--ccccccchHHHHHHHHHHHcCCChhhHHHHHHH
Q 039062 792 HILQFLDSMYMEK--------DMDELVMKTAIGLLGDLADTLGSN--AGSLIQQSLTSKDFLNECLSSKDHMIKESAEWA 861 (871)
Q Consensus 792 ~i~~~l~~~~~~~--------~~~~~~r~~a~~~l~~i~~~~~~~--~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~ 861 (871)
.++..+..+++.. ..++.+..-|+.=+|..++.+|.. +..-+. .+..+..+..++|++||-.|..|
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg----~K~~VM~Lm~h~d~~Vr~~AL~a 470 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTG----GKADIMELLNHSDSRVKYEALKA 470 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHS----HHHHHHHHTSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcC----cHHHHHHHhcCCCHHHHHHHHHH
Confidence 5677777777521 135556777777889999988754 333343 56778888888999999999888
Q ss_pred HHHH
Q 039062 862 RLAI 865 (871)
Q Consensus 862 ~~~~ 865 (871)
.+.+
T Consensus 471 vQkl 474 (480)
T 1ho8_A 471 TQAI 474 (480)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 157
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=51.04 E-value=52 Score=30.77 Aligned_cols=73 Identities=11% Similarity=0.011 Sum_probs=51.3
Q ss_pred cchHHHHHhhhcCCChhhHHHHHH----HHHHhhcCCChhhhhHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhhhh
Q 039062 366 PLVIPFIEENIAKPDWRQREAATY----AFGSILEGPSPDKLLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFL 441 (871)
Q Consensus 366 ~~l~~~l~~~l~~~~~~~r~~a~~----~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~~~~vr~~a~~~l~~~~~~~ 441 (871)
|...+.+.....|++.-.|.+|+. .+.. ......-...+..++..+...+ .|++..|+.+..|+|..++...
T Consensus 107 ~~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~---~~~k~~~~~~~~~~l~~i~~~l-~~~~~~v~kAi~W~Lr~~gk~~ 182 (235)
T 1t06_A 107 NIAQDVADKWIASGDELKMSAGWSCYCWLLGN---RKDNAFSESKISDMLEMVKDTI-HHSPERTKSAMNNFLNTVAISY 182 (235)
T ss_dssp SSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH---SCGGGSCHHHHHHHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHcCcHHHHHHHHHHHHHHHHhh---ccccCcChhhHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHhhC
Confidence 566777888888866445555555 3333 1111112356677888888899 9999999999999999988775
Q ss_pred c
Q 039062 442 H 442 (871)
Q Consensus 442 ~ 442 (871)
+
T Consensus 183 ~ 183 (235)
T 1t06_A 183 V 183 (235)
T ss_dssp G
T ss_pred H
Confidence 4
No 158
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=45.04 E-value=48 Score=28.38 Aligned_cols=92 Identities=11% Similarity=0.070 Sum_probs=58.8
Q ss_pred HhHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHhhhcccccH--HHHHHH-HHHHccCC-CCCCcCCchHHHHHHHHHHh
Q 039062 647 PDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYC--DGIMTQ-LLKDLSSN-QLHRSVKPPIFSCFGDIALA 722 (871)
Q Consensus 647 ~~i~~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~i~~~-l~~~l~~~-~~~~~v~~~~~~~l~~i~~~ 722 (871)
...+..|.+.+....++.+...|+.++..+++++|..|...+ ..+++. |.+.++.. +.+..||..++..+..-+..
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 346666666776433556777899999999999997665443 356653 56666543 22346888888888888877
Q ss_pred hccCh-HHhHHHHHHHH
Q 039062 723 IGENF-EKYLMYAMPML 738 (871)
Q Consensus 723 ~~~~~-~~~~~~i~~~l 738 (871)
++..- .+++..++..|
T Consensus 132 F~~~p~l~~i~~~Y~~L 148 (152)
T 3rru_A 132 FPGGVDVSEVKEVYLDL 148 (152)
T ss_dssp CSSSCCCHHHHHHHHHH
T ss_pred hCCCCcchHHHHHHHHH
Confidence 76531 24444444433
No 159
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=43.98 E-value=76 Score=29.24 Aligned_cols=88 Identities=8% Similarity=0.031 Sum_probs=54.2
Q ss_pred ccHhHHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHccCCC
Q 039062 343 WNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDP 422 (871)
Q Consensus 343 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~i~~~l~~~l~~d~ 422 (871)
|......+.+++.+....+ ..+.+.+.....|++...|.+|+..+ + ... + ..+...+++.+-..+ .|+
T Consensus 104 Wd~~D~~a~~~~~~~~~~~----~~~~~~i~~W~~s~~~w~rR~ai~~~--l-~~~--~--~~~~~~~~~i~~~~~-~d~ 171 (220)
T 2b6c_A 104 WDSVDAWRKFFGSWVALHL----TELPTIFALFYGAENFWNRRVALNLQ--L-MLK--E--KTNQDLLKKAIIYDR-TTE 171 (220)
T ss_dssp HHHHHHHHHHHHHHHHHSG----GGHHHHHHHHTTCSSHHHHHHHHHTT--T-TCG--G--GCCHHHHHHHHHHTT-TCC
T ss_pred HHHHHHHHHHHHHHHHHCh----HHHHHHHHHHHcCCCHHHHHHHHHHH--H-HHH--H--CCCHHHHHHHHHHhC-CCh
Confidence 6665433344444444332 23567788888887655555554422 2 111 1 122345567666688 999
Q ss_pred cHHHHHHHHHHHHHHhhhhc
Q 039062 423 NNHVKDTTAWTLGRIFEFLH 442 (871)
Q Consensus 423 ~~~vr~~a~~~l~~~~~~~~ 442 (871)
+..||.+..|+|..++...+
T Consensus 172 ~~yV~kavgW~Lr~~~k~~~ 191 (220)
T 2b6c_A 172 EFFIQKAIGWSLRQYSKTNP 191 (220)
T ss_dssp CHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHhhCH
Confidence 99999999999999887654
No 160
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=43.88 E-value=1.5e+02 Score=25.35 Aligned_cols=75 Identities=8% Similarity=0.142 Sum_probs=53.2
Q ss_pred chHHHHHhhhc-CCChhhHHHHHHHHHHhhcCCChhhhhHHH--HHHHHH-HHHHc--cCCCcHHHHHHHHHHHHHHhhh
Q 039062 367 LVIPFIEENIA-KPDWRQREAATYAFGSILEGPSPDKLLHIV--NVALSF-MLSAL--TKDPNNHVKDTTAWTLGRIFEF 440 (871)
Q Consensus 367 ~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l--~~i~~~-l~~~l--~~d~~~~vr~~a~~~l~~~~~~ 440 (871)
.....|...++ +.++.+...|+.++..++.+|+ ..+...+ ..++.. ++..+ ..+++..||..++..+......
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG-~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCG-HRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSC-HHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC-HHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 45666778887 4788899999999999999997 4443323 234444 44444 0345678999999998888877
Q ss_pred hc
Q 039062 441 LH 442 (871)
Q Consensus 441 ~~ 442 (871)
+.
T Consensus 132 f~ 133 (157)
T 1elk_A 132 FR 133 (157)
T ss_dssp HT
T ss_pred cC
Confidence 75
No 161
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=43.36 E-value=1.6e+02 Score=25.30 Aligned_cols=76 Identities=11% Similarity=0.073 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcc-cCcchhhhHHHHHHHHHHHhhhhhhhhh--HhHHHH-HHhhhcCC--cchhHHHHHHHHHHHHHHH
Q 039062 606 DQIMGLFLRVFAC-RSATVHEEAMLAIGALAYAAGLDFAKYM--PDFYKY-LEMGLQNF--EEYQVCAVTVGVVGDICRA 679 (871)
Q Consensus 606 ~~i~~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~i~~~-l~~~l~~~--~~~~v~~~a~~~l~~l~~~ 679 (871)
...+..+..-++. .++.++-.|+..+..+++.+|..|...+ ..++.. +++.+... ....|+..++.++..-...
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 3455566666653 5667788899999999999998886544 346665 55555322 2347888888888887777
Q ss_pred hh
Q 039062 680 LE 681 (871)
Q Consensus 680 ~~ 681 (871)
++
T Consensus 132 f~ 133 (157)
T 1elk_A 132 FR 133 (157)
T ss_dssp HT
T ss_pred cC
Confidence 65
No 162
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=41.29 E-value=1.1e+02 Score=28.27 Aligned_cols=73 Identities=5% Similarity=-0.044 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHHH
Q 039062 792 HILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAIN 866 (871)
Q Consensus 792 ~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~ 866 (871)
..+..|.+.+.. .+..+...|+.++..+++..|..|...+-..+|+..+.+-+.+..+..|++.+..-+..-.
T Consensus 42 ~a~r~l~krl~~--~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNS--PNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 566677666765 5788999999999999999999898777777777777766665567788877665544433
No 163
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=40.38 E-value=1.3e+02 Score=27.88 Aligned_cols=73 Identities=7% Similarity=0.053 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHHH
Q 039062 792 HILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAIN 866 (871)
Q Consensus 792 ~i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~ 866 (871)
..+..|.+.+.. .+..+...|+.++..+++..|..|...+-..+|+..+.+-+....+..|++.+...+..-.
T Consensus 45 ~a~ral~krl~~--~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 45 YAVNSIKKKVND--KNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 567777777764 5788999999999999999999998887777777766555555567788887766555443
No 164
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=40.23 E-value=1.7e+02 Score=24.72 Aligned_cols=76 Identities=11% Similarity=0.042 Sum_probs=56.2
Q ss_pred CchHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhc
Q 039062 128 QWPELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSF 206 (871)
Q Consensus 128 ~~~~ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 206 (871)
.-+.++..+.+.+....+..+..+|.++..++... ...+.......+.+.+...+. ..+..+|....+.+..|-..
T Consensus 40 ~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~-g~~y~~~F~~~l~~~f~~~~~--~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNV-GSPYTIYFSRNLFNLYKRTYL--LVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-CTTHHHHHHTTHHHHHHHHHH--TSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHhCc
Confidence 44677777777777778899999999999999987 444423334455556666665 46789999999999987654
No 165
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=40.03 E-value=2.7e+02 Score=26.97 Aligned_cols=80 Identities=13% Similarity=0.168 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCC------CHHHHHHHHHHHHHHHhhChHHH--------HHHHHHHHhCCCCChhHHHHHHHHHHccccc
Q 039062 4 EVTQVLLNAQSI------DGTVRKHAEESLKQFQEQNLPSF--------LLSLSGELANDDKPVDSRKLAGLILKNALDA 69 (871)
Q Consensus 4 ~l~~~l~~~~s~------~~~~r~~A~~~L~~~~~~~~~~~--------~~~l~~il~~~~~~~~~r~~a~~~lk~~i~~ 69 (871)
+|..+..-+.++ |-+.-..|-..|.++... ..| ...|-+++++...++.+|..|+.++...++.
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHD--i~~G~KI~~~ef~lL~nL~~~~~~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHD--YKHGYKIITHEFALLANLSLNENLPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTS--HHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhh--HHhhhHHHhCcHHHHHHHHhhccCChhHHHHHHHHHHHHHcc
Confidence 355555555555 334556666666555443 211 2334456666567889999999999998887
Q ss_pred chhhhHHHHhhhccCCC
Q 039062 70 KEQHRKFELVQRWLSLD 86 (871)
Q Consensus 70 ~~~~~~~~~~~~~~~~~ 86 (871)
++...... ...|+.+-
T Consensus 101 NP~Al~~V-~~~~p~fv 116 (315)
T 3qml_C 101 NPPVVEFI-NESFPNFK 116 (315)
T ss_dssp CHHHHHHH-HHHCTTHH
T ss_pred CHHHHHHH-HHhChhHH
Confidence 66655433 35675433
No 166
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=35.88 E-value=22 Score=33.34 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhHhcccccccccchHHHHHHHHHHHcCCChhhHHHHHHHHHHH
Q 039062 793 ILQFLDSMYMEKDMDELVMKTAIGLLGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAI 865 (871)
Q Consensus 793 i~~~l~~~~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 865 (871)
++|++....+. ...+.+|.++++.||.+++.-.++...|+-+.++|+-.|.-+. .++.--+..|.+.+.+|
T Consensus 102 LyPfL~t~sk~-r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime-~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 102 LYPFLHTVSKT-RPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIME-SGSELSKTVATFILQKI 172 (268)
T ss_dssp THHHHHCCCCS-HHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHH-HSCHHHHHHHHHHHHHH
T ss_pred hhhhhccccCC-CcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHh-hccHHHHHHHHHHHHHH
Confidence 34444433332 2346679999999999999876778888777776665555555 67888899999887765
No 167
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=33.64 E-value=4.9e+02 Score=28.18 Aligned_cols=109 Identities=8% Similarity=0.011 Sum_probs=67.2
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCccc-----hhhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhc
Q 039062 132 LIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVE-----QDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSF 206 (871)
Q Consensus 132 ll~~L~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~-----~~~~~~i~~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 206 (871)
-+..+...++++.......++..+..+.....+..+. ...+..+++.+...+.- .++..+|..|+.+++.++..
T Consensus 318 ~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~-~P~~~lR~~a~~vl~~~I~~ 396 (596)
T 4f52_E 318 NMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTL-CPIETLRKKSLAMLQLYINK 396 (596)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHHHHh
Confidence 3445666677777777788888888777765333221 12334455555544433 68999999999999998753
Q ss_pred chhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Q 039062 207 AQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISS 248 (871)
Q Consensus 207 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~ 248 (871)
.+ . +-+-.++..+++... .+.++..++..+..-+.
T Consensus 397 ~~----~-e~R~~iL~~LL~~~~--~~~v~~~lI~~~KdeI~ 431 (596)
T 4f52_E 397 LD----S-QGKYTLFRCLLNTSN--HSGVEAFIIQNIKNQID 431 (596)
T ss_dssp BC----H-HHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred CC----h-HHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHH
Confidence 22 1 223445555555443 56667777766665443
No 168
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=33.13 E-value=3.4e+02 Score=26.22 Aligned_cols=154 Identities=17% Similarity=0.183 Sum_probs=78.6
Q ss_pred chhHHHHHHHHHHHHHHHhhh-------cccccHHHHHHHHHHHccCCCCC-CcCCchHHHHHHHHHHhhccChHHh-HH
Q 039062 662 EYQVCAVTVGVVGDICRALEE-------KILPYCDGIMTQLLKDLSSNQLH-RSVKPPIFSCFGDIALAIGENFEKY-LM 732 (871)
Q Consensus 662 ~~~v~~~a~~~l~~l~~~~~~-------~~~~~~~~i~~~l~~~l~~~~~~-~~v~~~~~~~l~~i~~~~~~~~~~~-~~ 732 (871)
...+++.|...|+...++-+. ....|+..+++.|-..+..++.. ..+....++++..++... ..|.++ ++
T Consensus 83 ~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~F~~~~m~ 161 (315)
T 3qml_C 83 PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS-EDLPIYSTV 161 (315)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TTC--CCHH
T ss_pred ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-HhhhhccHH
Confidence 446788888888877665442 22345556666555544333111 123334444554444432 335443 23
Q ss_pred HHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHhhh--ccC-----Cc---cccccccchHHHHHHHHHHhc
Q 039062 733 YAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSGIFQG--FKN-----SP---KTQLLIPYAPHILQFLDSMYM 802 (871)
Q Consensus 733 ~i~~~l~~~l~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~l~~~--~~~-----~~---~~~~~~~~~~~i~~~l~~~~~ 802 (871)
.+...+. .. .. + ...|..+++.+..+... ... .. ..+.-.|-++.+...+.+.+.
T Consensus 162 ~L~~ly~-~~-~~------d-------~~~k~Kvl~li~d~f~~~~~~~~~~~~~~~kR~~e~~~~~~q~w~~~~q~~iq 226 (315)
T 3qml_C 162 VLQNVYE-RN-NK------D-------KQLQIKVLELISKILKADMYENDDTNLILFKRNAENWSSNLQEWANEFQEMVQ 226 (315)
T ss_dssp HHHHHHH-HT-TT------C-------HHHHHHHHHHHHHHHHHHTTC-------------------CHHHHHHHHHHHT
T ss_pred HHHHHHc-cC-CC------C-------HHHHHHHHHHHHHHcccccccccccccchhhhcccccCchHHHHHHHHHHHHh
Confidence 3333332 11 11 2 34566677766665531 111 00 011122555567788888888
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHhcccccc
Q 039062 803 EKDMDELVMKTAIGLLGDLADTLGSNAGS 831 (871)
Q Consensus 803 ~~~~~~~~r~~a~~~l~~i~~~~~~~~~~ 831 (871)
+...++.-.+.-|..+..|=+.+|+++.|
T Consensus 227 ~k~~dE~~~r~fF~~L~~ik~~~~~~lK~ 255 (315)
T 3qml_C 227 NKSIDELHTRTFFDTLYNLKKIFKSDITI 255 (315)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHGGGSCC
T ss_pred ccccCHHHHHHHHHHHHHHHHhcccccCC
Confidence 76666756666799999999999876654
No 169
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=31.70 E-value=2.2e+02 Score=23.49 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=46.9
Q ss_pred HHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcchHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHHHh
Q 039062 458 QIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRS 536 (871)
Q Consensus 458 ~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~~~ 536 (871)
..+...++.|.. .+.++..+.|++... .+.+.|++.+.+.+.... ++-|...+..+..++..
T Consensus 7 ~~l~~~L~~L~~s~~sI~~~s~w~l~~~--------------~~a~~iv~~i~~~l~~~~---~~~KL~~LYLindIl~n 69 (135)
T 4fu3_A 7 SALEKKLSELSNSQQSVQTLSLWLIHHR--------------KHAGPIVSVWHRELRKAK---SNRKLTFLYLANDVIQN 69 (135)
T ss_dssp HHHHHHHHHCCSSTTHHHHHHHHHHHTG--------------GGHHHHHHHHHHHHHHSC---TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHH
Confidence 445555566664 578888888887532 356777777777776653 24567888999999877
Q ss_pred cCCCcHHHHH
Q 039062 537 STDETAPMVL 546 (871)
Q Consensus 537 ~~~~~~~~~~ 546 (871)
+.....+|..
T Consensus 70 s~~~~~~y~~ 79 (135)
T 4fu3_A 70 SKRKGPEFTR 79 (135)
T ss_dssp HTTTCSHHHH
T ss_pred HHhcCHHHHH
Confidence 6543333433
No 170
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=29.14 E-value=1.8e+02 Score=22.06 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=30.5
Q ss_pred HHHHHHHhcCC---CHHHHHHHHHHHHHHHhhCh------HHHHHHHHHHHhCCCCChhHH
Q 039062 5 VTQVLLNAQSI---DGTVRKHAEESLKQFQEQNL------PSFLLSLSGELANDDKPVDSR 56 (871)
Q Consensus 5 l~~~l~~~~s~---~~~~r~~A~~~L~~~~~~~~------~~~~~~l~~il~~~~~~~~~r 56 (871)
..+.|..+.+. -.++|+.|++....+..... ...+..|-.+-.+++.|...|
T Consensus 19 ~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~~~~vRAAtAIs~LDeISnDPNmP~htR 79 (94)
T 2qzg_A 19 ISSMLEEIVEDTTVPRNIRAAADNAKNALHNEEQELIVRSATAIQYLDDISEDPNMPIHTR 79 (94)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHTTCTTCCHHHH
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhhcCCCCChHHH
Confidence 34455554333 34778888877776654421 244555556666666677777
No 171
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=28.92 E-value=4.1e+02 Score=25.78 Aligned_cols=173 Identities=7% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCcccchHHHHHhhhcCCChhhHHHHHHHHHHhhcCCChhhhhHHH------HHHHHHHHHHccC
Q 039062 347 MAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIV------NVALSFMLSALTK 420 (871)
Q Consensus 347 ~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l------~~i~~~l~~~l~~ 420 (871)
..-...+..+...-+...-..-+..+.+.+ +-....|..++-++..++- ......++ ..++..++..+..
T Consensus 83 ~~L~~l~~~l~~~s~~~~~~~~l~~l~kil-~WP~~~~fPvLDLlRl~~l---~p~~~~~~~~~~~~~~l~~~l~~~~~~ 158 (304)
T 3ebb_A 83 ILLEKILSLICNSSSEKPTVQQLQILWKAI-NCPEDIVFPALDILRLSIK---HPSVNENFCNEKEGAQFSSHLINLLNP 158 (304)
T ss_dssp HHHHHHHHHHHTTCSSCCCHHHHHHHHHHH-TSCTTTCHHHHHHHHHHTT---SHHHHHHHHSTTTHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhccCCCccchHHHHHHHHHH-cCCHHhHHHHHHHHHHHHc---CccHHHHhhccccchHHHHHHHHhcCC
Q ss_pred CCcHHHHHHHHHHHHHHhhhhccCCCCCCccchhhHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhhcccCCCCCCCcc
Q 039062 421 DPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKD-TPNVAEKACGALYFLAQGYEDVGPSSPLTP 499 (871)
Q Consensus 421 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~v~~~a~~~l~~l~~~~~~~~~~~~l~~ 499 (871)
+..|..+..+++++.++...-... .........+++.+...+.+ ++.++.+++..+.+++-... ...-.+
T Consensus 159 ~~~p~n~ml~lR~l~NlF~~~~g~-----~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~----~~~~~~ 229 (304)
T 3ebb_A 159 KGKPANQLLALRTFCNCFVGQAGQ-----KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFH----KDHNIE 229 (304)
T ss_dssp TSCHHHHHHHHHHHHHGGGSHHHH-----HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHH----HSCCHH
T ss_pred CCChHHHHHHHHHHHHccCCchhH-----HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHh----hcCCch
Q ss_pred hHHHHHHHHHHhhccCChhhhhHHHHHHHHHHHHH
Q 039062 500 FFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVV 534 (871)
Q Consensus 500 ~~~~il~~l~~~l~~~~~~~~~vr~~a~~~l~~l~ 534 (871)
-...++..+...++... +......++.|+|+++
T Consensus 230 ~~~~ll~~l~~il~~~~--d~EalyR~LvALGtL~ 262 (304)
T 3ebb_A 230 GKAQCLSLISTILEVVQ--DLEATFRLLVALGTLI 262 (304)
T ss_dssp HHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHH
No 172
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=28.45 E-value=1.9e+02 Score=21.75 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=34.1
Q ss_pred HHHHHHHhcCC---CHHHHHHHHHHHHHHHhhCh------HHHHHHHHHHHhCCCCChhHHH
Q 039062 5 VTQVLLNAQSI---DGTVRKHAEESLKQFQEQNL------PSFLLSLSGELANDDKPVDSRK 57 (871)
Q Consensus 5 l~~~l~~~~s~---~~~~r~~A~~~L~~~~~~~~------~~~~~~l~~il~~~~~~~~~r~ 57 (871)
..+.|..+.+. -.++|+.|++....+..... ...+..|-.+-.+++.|...|.
T Consensus 15 ~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~~~~vRAA~aIs~LDeISnDPNmP~h~RT 76 (89)
T 2qsb_A 15 VMYLLDELSQDITVPKNVRKVAQDSKAKLSQENESLDLRCATVLSMLDEMANDPNVPAHGRT 76 (89)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHTCTTSCHHHHH
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhhcCCCCChHHHH
Confidence 44455555443 34789989888877765421 2555666677777777888883
No 173
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=27.76 E-value=1.5e+02 Score=30.01 Aligned_cols=102 Identities=8% Similarity=0.045 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhhhcchhcccChhhHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHh-----HHhhHHhHHH
Q 039062 186 SEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTY-----YEKLAPYMQD 260 (871)
Q Consensus 186 ~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-----~~~~~~~~~~ 260 (871)
++.+......+++|+..++.+....-..-.. +..+..+..++..+.+.++..+++.|+.++... ...+..-+..
T Consensus 130 ~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~-~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~ 208 (383)
T 3eg5_B 130 GNYDSRNQHEIIRCLKAFMNNKFGIKTMLET-EEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTE 208 (383)
T ss_dssp ---CHHHHHHHHHHHHHHTSSHHHHHHHHTC-SSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcchhhHHHHHcC-hHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHH
Q ss_pred H--------HHHHHHHhhC-CChhHHHHHHHHHHHHH
Q 039062 261 I--------YSITAKAVRE-DEEPVALQAIEFWSSIC 288 (871)
Q Consensus 261 l--------~~~~~~~~~~-~~~~~~~~a~~~~~~l~ 288 (871)
+ ++.++..+.+ .+.+....++.++..++
T Consensus 209 ~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li 245 (383)
T 3eg5_B 209 RAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI 245 (383)
T ss_dssp HHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHH
No 174
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=25.96 E-value=2.8e+02 Score=22.83 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHh-------HHhhHHhHHHHHHHHHHHhhCCChhHHHHHHHHHH
Q 039062 218 DYIMRVVCEATQSAELKIRQAAFECLVSISSTY-------YEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWS 285 (871)
Q Consensus 218 ~~i~~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~ 285 (871)
..+++.+.+.+....++-|...+..+..++.+. ...+.+.+..++..+..........-....+..|.
T Consensus 38 ~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~ 112 (135)
T 4fu3_A 38 GPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQ 112 (135)
T ss_dssp HHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 556666666665555567888888888887652 23455555555554444333333333334455554
Done!