BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039064
         (224 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus
           musculus GN=Dus1l PE=2 SV=1
          Length = 475

 Score = 34.3 bits (77), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 9   TRCQDCGNQAKKNCAYMRCRTCCKRRGY 36
            +C  CGN     C +  CR CCK+R +
Sbjct: 395 AKCDQCGNPKGNRCVFNLCRGCCKKRAF 422


>sp|Q8K582|DUS1L_RAT tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus
           norvegicus GN=Dus1l PE=2 SV=1
          Length = 438

 Score = 33.5 bits (75), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 9   TRCQDCGNQAKKNCAYMRCRTCCKRRGY 36
            +C  CGN     C +  CR CCK+R +
Sbjct: 395 AKCDQCGNPKGNRCVFNLCRGCCKKRAF 422


>sp|Q6P1R4|DUS1L_HUMAN tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo
           sapiens GN=DUS1L PE=1 SV=1
          Length = 473

 Score = 33.1 bits (74), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 9   TRCQDCGNQAKKNCAYMRCRTCCKRRG 35
            +C  CGN     C +  CR CCK+R 
Sbjct: 393 AKCDQCGNPKGNRCVFSLCRGCCKKRA 419


>sp|Q6GGE0|Y1636_STAAR UPF0135 protein SAR1636 OS=Staphylococcus aureus (strain MRSA252)
           GN=SAR1636 PE=3 SV=1
          Length = 366

 Score = 32.3 bits (72), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 71  LQGHSPKRLRENPSSPGLQIGNFPAEITSEATFRCVKVSSIDDAIDRTTLAYKTSISVGG 130
           L  H P R  E+  + GL IG+   E+T   T     +  +++AI++    Y T IS   
Sbjct: 10  LDHHVPFRTAESWDNVGLLIGDEDVEVTGVLTALDCTLEVVNEAIEK---GYNTIISHHP 66

Query: 131 HIFKGI 136
            IFKG+
Sbjct: 67  LIFKGV 72


>sp|Q9NGQ2|KIF1_DICDI Kinesin-related protein 1 OS=Dictyostelium discoideum GN=kif1 PE=1
            SV=1
          Length = 2205

 Score = 32.3 bits (72), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 144  SNSNNNVGESSSSEPPPPPQHQQQPYYP 171
            SN  NN  + SSS  PP PQ Q  PY P
Sbjct: 1120 SNQTNN--QQSSSSQPPLPQQQGTPYNP 1145


>sp|Q1ACM5|CYF_CHAVU Apocytochrome f OS=Chara vulgaris GN=petA PE=3 SV=1
          Length = 321

 Score = 31.2 bits (69), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 12/90 (13%)

Query: 68  HLQLQGHSPKRLRENPSSPGLQIGNFPAEITSEATFRCVKVSSIDDAIDRTTLAYKTSIS 127
           +L  Q +SP +         L +G  P +  SE TF  +   S D +I++ T   K  I 
Sbjct: 136 NLSFQSYSPDQKNI------LVVGPVPGKKYSEITFPIL---SPDPSINKQTNFLKYPIY 186

Query: 128 VGGHIFKGILYYQGCESNSNNNVGESSSSE 157
           VGG+  +G +Y  G +S   NN   SSS+E
Sbjct: 187 VGGNRGRGQIYLDGSKS---NNTIYSSSAE 213


>sp|Q9BBR8|CYF_LOTJA Apocytochrome f OS=Lotus japonicus GN=petA PE=3 SV=1
          Length = 320

 Score = 30.4 bits (67), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 88  LQIGNFPAEITSEATFRCVKVSSIDDAIDRTTLAYKTSISVGGHIFKGILYYQGCESNSN 147
           L +G  P +  SE TF    + S D A +R     K  I VGG+  +G +Y  G +SN+N
Sbjct: 148 LVVGPVPGQKYSEITF---PILSPDPATNRDVNFLKYPIYVGGNRGRGQIYPDGSKSNNN 204


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.129    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,916,142
Number of Sequences: 539616
Number of extensions: 3523237
Number of successful extensions: 27498
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 25401
Number of HSP's gapped (non-prelim): 1758
length of query: 224
length of database: 191,569,459
effective HSP length: 113
effective length of query: 111
effective length of database: 130,592,851
effective search space: 14495806461
effective search space used: 14495806461
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)