BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039067
         (304 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EDI|A Chain A, Crystal Structure Of Tolloid-Like Protease 1 (Tll-1)
           Protease Domain
          Length = 201

 Score = 33.5 bits (75), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 59  VWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRADQLTTLGLQYLPKLRCLY 118
           +W    + Y+   +  GS + +    +RH E    +    R+D+ + +   Y P   C Y
Sbjct: 9   IWPGGVIPYVIGGNFTGSQRAMFKQAMRHWEKHTCVTFIERSDEESYIVFTYRPCGCCSY 68

Query: 119 PGMHTSEWPALESLLVRHCDKLKIFAADLSQ 149
            G   +   A+   + ++CDK  I   +L  
Sbjct: 69  VGRRGNGPQAIS--IGKNCDKFGIVVHELGH 97


>pdb|3R2W|A Chain A, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
           Sapiens
 pdb|3R2W|B Chain B, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
           Sapiens
 pdb|3R2W|C Chain C, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
           Sapiens
 pdb|3R2W|D Chain D, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
           Sapiens
 pdb|3R3I|A Chain A, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
           Pyrophosphorylase Of Homo Sapiens
 pdb|3R3I|B Chain B, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
           Pyrophosphorylase Of Homo Sapiens
 pdb|3R3I|C Chain C, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
           Pyrophosphorylase Of Homo Sapiens
 pdb|3R3I|D Chain D, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
           Pyrophosphorylase Of Homo Sapiens
          Length = 528

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 14/156 (8%)

Query: 14  PLFNEKVALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASM 73
           P  N++  LP  + +  S  N  + W+      ++  F N   L  +     +YIF +++
Sbjct: 214 PRINKESLLPVAKDVSYSGENT-EAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNI 272

Query: 74  --IGS---LKQLQHL----DIRHCEDLQEIISENRADQLTTLGLQYLPKLRCL----YPG 120
             +G+   L  L HL    + + CE + E+ ++ RAD       QY  KLR +     P 
Sbjct: 273 DNLGATVDLYILNHLMNPPNGKRCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPK 332

Query: 121 MHTSEWPALESLLVRHCDKLKIFAADLSQNNENDQL 156
            H  E+ ++    + + + L I  A + +  E + +
Sbjct: 333 AHVDEFKSVSKFKIFNTNNLWISLAAVKRLQEQNAI 368


>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
 pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
          Length = 317

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 10/79 (12%)

Query: 42  NHLPVMFPRFQNLTRL--IVWRCHKLKYIFSASMIGSLKQLQHLDIR----HCEDLQEII 95
           N L  M P FQ+   +  I  R +KL  I  A      + L+H D+R    HC  L++  
Sbjct: 201 NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFS--QNLEHFDLRGNGFHCGTLRDFF 258

Query: 96  SENRADQLTTLGLQYLPKL 114
           S+N+  ++ T+  Q + KL
Sbjct: 259 SKNQ--RVQTVAKQTVKKL 275


>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
          Length = 487

 Score = 30.0 bits (66), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 10/79 (12%)

Query: 42  NHLPVMFPRFQNLTRL--IVWRCHKLKYIFSASMIGSLKQLQHLDIR----HCEDLQEII 95
           N L  M P FQ+   +  I  R +KL  I  A      + L+H D+R    HC  L++  
Sbjct: 201 NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFS--QNLEHFDLRGNGFHCGTLRDFF 258

Query: 96  SENRADQLTTLGLQYLPKL 114
           S+N+  ++ T+  Q + KL
Sbjct: 259 SKNQ--RVQTVAKQTVKKL 275


>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen
          Length = 529

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 166 PLEKSLRVTVDHQLTSLVIMIDDDQIVSNFKELSLSGKDV-----KMILQADFPQHLFGS 220
           PLE+   +  D  +T  ++++ D Q+V   +E+   G  V     K       P+H   +
Sbjct: 264 PLEQPTMIH-DFAITENLVVVPDHQVVFKLQEMLRGGSPVVLDAAKTSRFGVLPKHAADA 322

Query: 221 LKQLEIVGDDSTCFPIWNVFSEEGSLE 247
            +   +   D  CF +WN + +E + E
Sbjct: 323 SEMAWVDVPDCFCFHLWNAWEDEATGE 349


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,751,694
Number of Sequences: 62578
Number of extensions: 346601
Number of successful extensions: 673
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 672
Number of HSP's gapped (non-prelim): 19
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)