Query 039067
Match_columns 304
No_of_seqs 126 out of 1262
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.6 6.1E-15 1.3E-19 152.3 14.8 113 21-145 609-722 (1153)
2 PLN03210 Resistant to P. syrin 99.6 4.9E-14 1.1E-18 145.7 15.6 257 19-301 630-912 (1153)
3 PLN00113 leucine-rich repeat r 99.1 6.4E-10 1.4E-14 114.0 10.7 41 250-294 304-344 (968)
4 PLN00113 leucine-rich repeat r 99.1 9.1E-10 2E-14 112.9 11.4 105 21-137 116-222 (968)
5 KOG4194 Membrane glycoprotein 99.0 2.3E-10 4.9E-15 105.8 4.4 232 24-293 174-427 (873)
6 KOG4194 Membrane glycoprotein 99.0 6.5E-10 1.4E-14 102.8 5.4 170 22-225 77-251 (873)
7 KOG4341 F-box protein containi 99.0 1.3E-11 2.9E-16 109.6 -5.4 66 51-116 163-231 (483)
8 PRK15370 E3 ubiquitin-protein 98.8 7.5E-09 1.6E-13 101.9 7.2 104 22-146 198-301 (754)
9 PRK15370 E3 ubiquitin-protein 98.8 1.8E-08 3.9E-13 99.3 7.7 114 22-156 219-332 (754)
10 PRK15387 E3 ubiquitin-protein 98.7 1.3E-07 2.8E-12 93.1 12.3 99 22-145 221-319 (788)
11 PRK15387 E3 ubiquitin-protein 98.6 1.1E-07 2.4E-12 93.5 9.0 77 22-117 241-317 (788)
12 KOG0444 Cytoskeletal regulator 98.6 7.1E-09 1.5E-13 96.9 -0.2 50 248-302 333-382 (1255)
13 KOG4341 F-box protein containi 98.5 3.3E-09 7.1E-14 94.6 -5.8 217 21-298 162-388 (483)
14 KOG4658 Apoptotic ATPase [Sign 98.4 2.9E-07 6.4E-12 92.2 4.6 105 22-136 544-651 (889)
15 KOG3207 Beta-tubulin folding c 98.4 6.5E-08 1.4E-12 86.9 -0.1 186 21-264 119-311 (505)
16 KOG3207 Beta-tubulin folding c 98.4 2.6E-07 5.6E-12 83.1 3.1 15 191-205 299-313 (505)
17 PF13855 LRR_8: Leucine rich r 98.3 1.6E-06 3.4E-11 57.8 4.7 60 23-89 1-60 (61)
18 KOG0444 Cytoskeletal regulator 98.3 1.1E-07 2.3E-12 89.3 -1.5 22 252-273 360-381 (1255)
19 PRK15386 type III secretion pr 98.1 2.1E-05 4.6E-10 71.8 9.5 58 51-115 51-108 (426)
20 PF14580 LRR_9: Leucine-rich r 98.1 3.9E-06 8.5E-11 68.2 4.2 105 22-138 18-124 (175)
21 PRK15386 type III secretion pr 98.0 1.6E-05 3.5E-10 72.6 7.2 72 21-110 50-121 (426)
22 KOG2120 SCF ubiquitin ligase, 97.9 3.5E-07 7.5E-12 78.7 -4.7 86 52-138 185-271 (419)
23 KOG4658 Apoptotic ATPase [Sign 97.9 4.8E-06 1E-10 83.7 1.8 81 21-110 569-651 (889)
24 KOG0618 Serine/threonine phosp 97.9 1.1E-06 2.5E-11 85.6 -2.5 200 21-294 262-488 (1081)
25 KOG0618 Serine/threonine phosp 97.9 2.6E-06 5.5E-11 83.2 -0.6 87 51-145 240-327 (1081)
26 KOG2120 SCF ubiquitin ligase, 97.8 2.1E-06 4.7E-11 74.0 -1.2 114 22-141 209-327 (419)
27 KOG0617 Ras suppressor protein 97.8 2E-06 4.2E-11 68.6 -2.3 105 22-137 32-137 (264)
28 PF13855 LRR_8: Leucine rich r 97.7 5E-05 1.1E-09 50.4 4.3 56 52-110 1-58 (61)
29 KOG0472 Leucine-rich repeat pr 97.7 1.6E-05 3.4E-10 71.3 1.9 95 191-293 433-539 (565)
30 KOG4237 Extracellular matrix p 97.6 3E-05 6.4E-10 69.4 2.0 71 22-99 66-136 (498)
31 KOG0617 Ras suppressor protein 97.6 6.2E-06 1.3E-10 65.8 -2.4 113 20-145 53-190 (264)
32 KOG1947 Leucine rich repeat pr 97.5 1.2E-05 2.6E-10 75.8 -1.5 91 51-141 187-283 (482)
33 cd00116 LRR_RI Leucine-rich re 97.5 2.4E-05 5.1E-10 69.8 -0.4 112 21-141 21-150 (319)
34 KOG0472 Leucine-rich repeat pr 97.3 1.8E-06 4E-11 77.1 -9.2 109 23-145 45-154 (565)
35 cd00116 LRR_RI Leucine-rich re 97.2 8.1E-05 1.8E-09 66.3 -0.3 114 21-141 49-178 (319)
36 KOG1259 Nischarin, modulator o 97.1 0.00011 2.4E-09 63.7 -0.2 115 17-144 278-415 (490)
37 KOG3665 ZYG-1-like serine/thre 97.1 0.00014 3.1E-09 71.5 0.4 109 22-137 121-230 (699)
38 PF14580 LRR_9: Leucine-rich r 97.1 0.00082 1.8E-08 54.7 4.6 86 17-112 35-124 (175)
39 PF12799 LRR_4: Leucine Rich r 96.6 0.002 4.2E-08 39.7 2.7 39 52-94 1-39 (44)
40 PF12799 LRR_4: Leucine Rich r 96.5 0.0043 9.3E-08 38.1 3.7 40 23-69 1-40 (44)
41 KOG1947 Leucine rich repeat pr 96.5 0.00039 8.6E-09 65.5 -1.4 116 22-142 187-310 (482)
42 KOG3665 ZYG-1-like serine/thre 96.5 0.0011 2.5E-08 65.2 1.5 106 22-136 147-259 (699)
43 KOG2982 Uncharacterized conser 96.2 0.0028 6.1E-08 55.1 2.2 115 22-144 96-215 (418)
44 KOG3864 Uncharacterized conser 96.1 0.00099 2.1E-08 54.6 -1.2 65 51-115 124-190 (221)
45 KOG1259 Nischarin, modulator o 95.9 0.0015 3.2E-08 56.9 -0.9 55 78-137 284-339 (490)
46 COG4886 Leucine-rich repeat (L 95.7 0.011 2.4E-07 54.5 4.0 103 22-137 115-219 (394)
47 PLN03150 hypothetical protein; 95.1 0.04 8.7E-07 54.1 6.0 107 25-141 420-529 (623)
48 KOG0532 Leucine-rich repeat (L 94.9 0.0055 1.2E-07 57.7 -0.7 110 25-148 145-254 (722)
49 KOG3864 Uncharacterized conser 94.8 0.0076 1.6E-07 49.6 -0.1 43 252-296 123-165 (221)
50 KOG4237 Extracellular matrix p 94.5 0.019 4.1E-07 51.9 1.6 67 20-94 271-337 (498)
51 PLN03150 hypothetical protein; 94.5 0.053 1.1E-06 53.3 4.8 90 19-116 438-530 (623)
52 KOG1859 Leucine-rich repeat pr 94.3 0.0084 1.8E-07 58.2 -1.1 57 50-111 185-242 (1096)
53 KOG1644 U2-associated snRNP A' 94.0 0.11 2.4E-06 43.0 4.9 106 22-137 41-150 (233)
54 KOG2739 Leucine-rich acidic nu 94.0 0.02 4.4E-07 48.8 0.7 83 51-138 42-127 (260)
55 COG4886 Leucine-rich repeat (L 93.3 0.069 1.5E-06 49.2 3.0 79 24-112 141-220 (394)
56 KOG0532 Leucine-rich repeat (L 92.7 0.0058 1.3E-07 57.6 -4.9 64 76-144 119-182 (722)
57 PF13504 LRR_7: Leucine rich r 92.3 0.071 1.5E-06 25.4 0.9 15 283-298 2-16 (17)
58 KOG1859 Leucine-rich repeat pr 92.2 0.0063 1.4E-07 59.0 -5.4 105 22-138 186-290 (1096)
59 PF00560 LRR_1: Leucine Rich R 91.7 0.18 3.8E-06 25.8 2.1 15 53-68 1-15 (22)
60 KOG1644 U2-associated snRNP A' 91.1 0.33 7.1E-06 40.2 4.1 82 51-138 41-124 (233)
61 KOG0531 Protein phosphatase 1, 90.4 0.15 3.2E-06 47.6 1.8 81 20-111 92-172 (414)
62 smart00367 LRR_CC Leucine-rich 90.3 0.11 2.5E-06 27.7 0.6 17 281-297 1-17 (26)
63 KOG1909 Ran GTPase-activating 89.7 0.072 1.6E-06 47.4 -0.9 91 15-111 22-130 (382)
64 KOG1909 Ran GTPase-activating 89.4 0.13 2.7E-06 45.9 0.4 110 22-138 184-309 (382)
65 KOG2123 Uncharacterized conser 88.9 0.036 7.8E-07 48.0 -3.2 80 22-112 18-99 (388)
66 KOG0531 Protein phosphatase 1, 88.6 0.13 2.7E-06 48.0 -0.2 81 19-111 114-196 (414)
67 PF13306 LRR_5: Leucine rich r 87.9 1.8 3.9E-05 32.6 6.0 100 22-136 11-112 (129)
68 KOG2739 Leucine-rich acidic nu 86.3 0.42 9.1E-06 41.0 1.7 106 22-138 42-154 (260)
69 KOG2123 Uncharacterized conser 83.1 0.076 1.6E-06 46.1 -4.1 55 51-110 18-72 (388)
70 PF13306 LRR_5: Leucine rich r 72.5 10 0.00023 28.2 5.4 76 22-108 34-110 (129)
71 KOG4579 Leucine-rich repeat (L 70.9 0.6 1.3E-05 36.4 -1.9 42 51-95 52-93 (177)
72 smart00370 LRR Leucine-rich re 70.7 2.1 4.5E-05 22.5 0.7 16 52-68 2-17 (26)
73 smart00369 LRR_TYP Leucine-ric 70.7 2.1 4.5E-05 22.5 0.7 16 52-68 2-17 (26)
74 KOG2982 Uncharacterized conser 65.5 1.5 3.3E-05 38.6 -0.7 67 75-143 196-265 (418)
75 PF13516 LRR_6: Leucine Rich r 60.1 6.3 0.00014 20.1 1.3 12 78-89 2-13 (24)
76 smart00365 LRR_SD22 Leucine-ri 59.6 6.1 0.00013 21.1 1.2 16 23-38 2-17 (26)
77 PF07725 LRR_3: Leucine Rich R 56.5 4.1 8.9E-05 20.3 0.2 18 24-41 1-18 (20)
78 KOG4579 Leucine-rich repeat (L 42.7 5.2 0.00011 31.4 -1.1 62 21-90 51-112 (177)
79 COG5238 RNA1 Ran GTPase-activa 36.3 4.5 9.9E-05 35.3 -2.5 14 192-205 271-284 (388)
80 KOG3763 mRNA export factor TAP 29.6 20 0.00043 34.4 0.3 64 51-116 217-285 (585)
81 smart00364 LRR_BAC Leucine-ric 25.6 33 0.00072 18.3 0.6 14 54-68 4-17 (26)
82 smart00368 LRR_RI Leucine rich 24.9 48 0.001 17.7 1.2 12 78-89 2-13 (28)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.61 E-value=6.1e-15 Score=152.35 Aligned_cols=113 Identities=24% Similarity=0.382 Sum_probs=93.1
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccC-
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENR- 99 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~- 99 (304)
.+.+|++|++.+++++.+|.+... +++|+.|++++|..++.++. ...+++|++|++++|..+.+++....
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~~~~~------l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWDGVHS------LTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred CccCCcEEECcCcccccccccccc------CCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhhc
Confidence 467899999999988888876532 89999999999988888843 35679999999999998888876533
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeeccccccccccc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 145 (304)
.++|+.|++++|.+++.++... .+++|+.|.+++|..++.+|.
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCcccccc
Confidence 3899999999999999988653 689999999999988888774
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.56 E-value=4.9e-14 Score=145.69 Aligned_cols=257 Identities=19% Similarity=0.179 Sum_probs=161.1
Q ss_pred cccCCccceeeecce-eeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc
Q 039067 19 KVALPNLEALEISEI-NVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE 97 (304)
Q Consensus 19 ~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~ 97 (304)
...+++|+.|+|+++ +++.++. ... +++|++|++.+|..+..+|. . ++.+++|++|++++|.+++.++..
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~--ls~-----l~~Le~L~L~~c~~L~~lp~-s-i~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD--LSM-----ATNLETLKLSDCSSLVELPS-S-IQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc--ccc-----CCcccEEEecCCCCccccch-h-hhccCCCCEEeCCCCCCcCccCCc
Confidence 345899999999998 6666643 111 79999999999999988853 3 578999999999999999988876
Q ss_pred cCCCccceeecccCccceecCCCcccCCCCccceeeecccccccccccCC-CCCCCCCCCCCcc-------c-------c
Q 039067 98 NRADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADL-SQNNENDQLGIPE-------Q-------Q 162 (304)
Q Consensus 98 ~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~-~~~l~~~~~~~~~-------~-------~ 162 (304)
...++|+.|.+++|..++.++.. .++|+.|.+.++. ++.+|... ..++..+.+.... . .
T Consensus 701 i~l~sL~~L~Lsgc~~L~~~p~~-----~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 701 INLKSLYRLNLSGCSRLKSFPDI-----STNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred CCCCCCCEEeCCCCCCccccccc-----cCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhh
Confidence 66689999999999988877642 4678888887764 66665421 1122211111100 0 0
Q ss_pred cccccccccceeccccccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc--ccCCCCcccchhh--
Q 039067 163 LLWPLEKSLRVTVDHQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE--IVGDDSTCFPIWN-- 238 (304)
Q Consensus 163 ~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~--~c~~~~~~~p~~~-- 238 (304)
........+.+..+..+..++. ....+++|+.|+|++|......+. ...+++|+.|. .|..+.. +|...
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~---si~~L~~L~~L~Ls~C~~L~~LP~---~~~L~sL~~L~Ls~c~~L~~-~p~~~~n 847 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPS---SIQNLHKLEHLEIENCINLETLPT---GINLESLESLDLSGCSRLRT-FPDISTN 847 (1153)
T ss_pred hccccchheeCCCCCCccccCh---hhhCCCCCCEEECCCCCCcCeeCC---CCCccccCEEECCCCCcccc-ccccccc
Confidence 0011111122211111111111 112367788888888876433221 22456666666 5554432 33211
Q ss_pred hhhcc------CccccccccccccceeecccccCcccccCCCCcCCCCCCcccEEEEecCCCceeccCC
Q 039067 239 VFSEE------GSLEKHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCARNAESSTP 301 (304)
Q Consensus 239 ~~~l~------~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~ 301 (304)
++.+. ...+..+..+++|+.|.+.+|++|+.+... ...+++|+.+++.+|++|++++.+
T Consensus 848 L~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~----~~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 848 ISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN----ISKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred cCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcc----cccccCCCeeecCCCcccccccCC
Confidence 11111 112233567899999999999999988543 346899999999999999977543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.06 E-value=6.4e-10 Score=114.02 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=24.9
Q ss_pred cccccccceeecccccCcccccCCCCcCCCCCCcccEEEEecCCC
Q 039067 250 VGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCAR 294 (304)
Q Consensus 250 ~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~~ 294 (304)
+..+++|+.|++.++.-...+ +.....+++|++|++++|.-
T Consensus 304 ~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTGKI----PVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred HcCCCCCcEEECCCCccCCcC----ChhHhcCCCCCEEECcCCCC
Confidence 345677777777766322222 11223678888888888763
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.06 E-value=9.1e-10 Score=112.92 Aligned_cols=105 Identities=19% Similarity=0.109 Sum_probs=58.1
Q ss_pred cCCccceeeecceeeee-ecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc-c
Q 039067 21 ALPNLEALEISEINVNK-IWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE-N 98 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~-~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~-~ 98 (304)
.+++|+.|+++++++.. ++. +. +++|++|++++| .+....|. ..+.+++|++|++++|.-...++.. .
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~----~~----l~~L~~L~Ls~n-~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~ 185 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR----GS----IPNLETLDLSNN-MLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIPNSLT 185 (968)
T ss_pred cCCCCCEEECcCCccccccCc----cc----cCCCCEEECcCC-cccccCCh-HHhcCCCCCEEECccCcccccCChhhh
Confidence 47888888888886542 221 11 677777777776 33322232 2456777777777777532233322 1
Q ss_pred CCCccceeecccCccceecCCCcccCCCCccceeeeccc
Q 039067 99 RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHC 137 (304)
Q Consensus 99 ~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C 137 (304)
..++|++|+++++.-...++.. ...+++|+.|++.++
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n 222 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRE--LGQMKSLKWIYLGYN 222 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChH--HcCcCCccEEECcCC
Confidence 2266777777666322222221 124566666666655
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.02 E-value=2.3e-10 Score=105.78 Aligned_cols=232 Identities=17% Similarity=0.162 Sum_probs=117.8
Q ss_pred ccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc--cCCC
Q 039067 24 NLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE--NRAD 101 (304)
Q Consensus 24 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~~~ 101 (304)
||+.|+|.++.++.+..+.+.. |.+|-+|.+++. +++.+|+. .+.++|+|+.|++..+. +..+... .+.+
T Consensus 174 ni~~L~La~N~It~l~~~~F~~-----lnsL~tlkLsrN-rittLp~r-~Fk~L~~L~~LdLnrN~-irive~ltFqgL~ 245 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDS-----LNSLLTLKLSRN-RITTLPQR-SFKRLPKLESLDLNRNR-IRIVEGLTFQGLP 245 (873)
T ss_pred CceEEeeccccccccccccccc-----cchheeeecccC-cccccCHH-Hhhhcchhhhhhccccc-eeeehhhhhcCch
Confidence 4555555555554443333332 556666666653 56666433 33566777777776654 3333211 1125
Q ss_pred ccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCC---CCCCCCCCCCcccccccccccccceecccc
Q 039067 102 QLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLS---QNNENDQLGIPEQQLLWPLEKSLRVTVDHQ 178 (304)
Q Consensus 102 ~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~---~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~ 178 (304)
+|+.|.+... ++..+..+++ -.+..+++|++... +++.+..+.. ..++.++.+...++..-.
T Consensus 246 Sl~nlklqrN-~I~kL~DG~F-y~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~------------ 310 (873)
T KOG4194|consen 246 SLQNLKLQRN-DISKLDDGAF-YGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI------------ 310 (873)
T ss_pred hhhhhhhhhc-CcccccCcce-eeecccceeecccc-hhhhhhcccccccchhhhhccchhhhheeec------------
Confidence 5555555433 3333333332 13555666665544 3444433221 122223322222221100
Q ss_pred ccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhh---hhhcc-----------
Q 039067 179 LTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWN---VFSEE----------- 243 (304)
Q Consensus 179 l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~---~~~l~----------- 243 (304)
+.=...++|++|+++++.....-. -.+..+..|+.|. .-+.+.. +.... +.++.
T Consensus 311 --------d~WsftqkL~~LdLs~N~i~~l~~--~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 311 --------DSWSFTQKLKELDLSSNRITRLDE--GSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSW 379 (873)
T ss_pred --------chhhhcccceeEeccccccccCCh--hHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEE
Confidence 011136788888888877533211 1133344444444 2222221 11111 11111
Q ss_pred --CccccccccccccceeecccccCcccccCCCCcCCCCCCcccEEEEecCC
Q 039067 244 --GSLEKHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCA 293 (304)
Q Consensus 244 --~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~ 293 (304)
++....+.++++|++|.+.+. +|++|.+.++. .+++||+|++.+-+
T Consensus 380 ~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfs---gl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 380 CIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFS---GLEALEHLDLGDNA 427 (873)
T ss_pred EEecchhhhccchhhhheeecCc-eeeecchhhhc---cCcccceecCCCCc
Confidence 223344677999999999986 89999998776 88999999987755
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.97 E-value=6.5e-10 Score=102.82 Aligned_cols=170 Identities=15% Similarity=0.154 Sum_probs=97.7
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccC--
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENR-- 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~-- 99 (304)
++.-++|++++++++.+-...+.+ ++||+.+++.+. .++.+|..+ .-..+|++|++.++. |..+-++.-
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~n-----l~nLq~v~l~~N-~Lt~IP~f~--~~sghl~~L~L~~N~-I~sv~se~L~~ 147 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYN-----LPNLQEVNLNKN-ELTRIPRFG--HESGHLEKLDLRHNL-ISSVTSEELSA 147 (873)
T ss_pred ccceeeeeccccccccCcHHHHhc-----CCcceeeeeccc-hhhhccccc--ccccceeEEeeeccc-cccccHHHHHh
Confidence 344567888888777754443333 788888888774 677775432 334578888888774 544433321
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCCC---CCCCCCCCcccccccccccccceecc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQN---NENDQLGIPEQQLLWPLEKSLRVTVD 176 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~---l~~~~~~~~~~~~l~~~~~~l~~~~~ 176 (304)
-|.|++|+|+.. .+..++..... .=.++++|++.+. .++++..+.... +..++.+...
T Consensus 148 l~alrslDLSrN-~is~i~~~sfp-~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNr---------------- 208 (873)
T KOG4194|consen 148 LPALRSLDLSRN-LISEIPKPSFP-AKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNR---------------- 208 (873)
T ss_pred Hhhhhhhhhhhc-hhhcccCCCCC-CCCCceEEeeccc-cccccccccccccchheeeecccCc----------------
Confidence 177888888764 45555543211 1256888888776 466665433221 1111111111
Q ss_pred ccccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc
Q 039067 177 HQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE 225 (304)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~ 225 (304)
++.++.. .=+-+|+|+.|++.++....+.. ..++++++|+.++
T Consensus 209 --ittLp~r--~Fk~L~~L~~LdLnrN~irive~--ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 209 --ITTLPQR--SFKRLPKLESLDLNRNRIRIVEG--LTFQGLPSLQNLK 251 (873)
T ss_pred --ccccCHH--Hhhhcchhhhhhccccceeeehh--hhhcCchhhhhhh
Confidence 1111100 00126889999999888754422 4578888888887
No 7
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.96 E-value=1.3e-11 Score=109.56 Aligned_cols=66 Identities=20% Similarity=0.452 Sum_probs=32.2
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc---cCCCccceeecccCcccee
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE---NRADQLTTLGLQYLPKLRC 116 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~---~~~~~L~~L~L~~c~~L~~ 116 (304)
+||+++|.+.+|.++++-.-.+....+++|++|++..|.+++..... .+.++|+.|.++.|+..++
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc
Confidence 55555555555555544433334445555555555555555433211 2225555555555555444
No 8
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.82 E-value=7.5e-09 Score=101.93 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=74.7
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRAD 101 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~ 101 (304)
.++|+.|+|++++++.++... +.+|++|++++| +++.+|. .. .++|++|++++|. +..++.... .
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l--------~~nL~~L~Ls~N-~LtsLP~-~l---~~~L~~L~Ls~N~-L~~LP~~l~-s 262 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENL--------QGNIKTLYANSN-QLTSIPA-TL---PDTIQEMELSINR-ITELPERLP-S 262 (754)
T ss_pred ccCCcEEEecCCCCCcCChhh--------ccCCCEEECCCC-ccccCCh-hh---hccccEEECcCCc-cCcCChhHh-C
Confidence 457888999888877765532 678999999886 6777743 22 3578999999886 666654432 5
Q ss_pred ccceeecccCccceecCCCcccCCCCccceeeecccccccccccC
Q 039067 102 QLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAAD 146 (304)
Q Consensus 102 ~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~ 146 (304)
+|+.|+++++ +++.++... .++|+.|++++| +|+.+|..
T Consensus 263 ~L~~L~Ls~N-~L~~LP~~l----~~sL~~L~Ls~N-~Lt~LP~~ 301 (754)
T PRK15370 263 ALQSLDLFHN-KISCLPENL----PEELRYLSVYDN-SIRTLPAH 301 (754)
T ss_pred CCCEEECcCC-ccCcccccc----CCCCcEEECCCC-ccccCccc
Confidence 7899999755 777776432 358999999888 68877653
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.76 E-value=1.8e-08 Score=99.27 Aligned_cols=114 Identities=14% Similarity=0.111 Sum_probs=80.0
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRAD 101 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~ 101 (304)
+++|++|++++|+++.++... .++|+.|++++| .+..+|. .. ..+|++|+++++ ++..++.... +
T Consensus 219 ~~nL~~L~Ls~N~LtsLP~~l--------~~~L~~L~Ls~N-~L~~LP~-~l---~s~L~~L~Ls~N-~L~~LP~~l~-~ 283 (754)
T PRK15370 219 QGNIKTLYANSNQLTSIPATL--------PDTIQEMELSIN-RITELPE-RL---PSALQSLDLFHN-KISCLPENLP-E 283 (754)
T ss_pred ccCCCEEECCCCccccCChhh--------hccccEEECcCC-ccCcCCh-hH---hCCCCEEECcCC-ccCccccccC-C
Confidence 468999999999887765431 568999999987 5777743 22 258999999876 4776654332 6
Q ss_pred ccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCCCCCCCCC
Q 039067 102 QLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQNNENDQL 156 (304)
Q Consensus 102 ~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~l~~~~~ 156 (304)
+|+.|+++++ +++.++... .++|+.|+++++ +++.+|......++.+.+
T Consensus 284 sL~~L~Ls~N-~Lt~LP~~l----p~sL~~L~Ls~N-~Lt~LP~~l~~sL~~L~L 332 (754)
T PRK15370 284 ELRYLSVYDN-SIRTLPAHL----PSGITHLNVQSN-SLTALPETLPPGLKTLEA 332 (754)
T ss_pred CCcEEECCCC-ccccCcccc----hhhHHHHHhcCC-ccccCCccccccceeccc
Confidence 8999999987 777776432 357888888887 477776543334444443
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.72 E-value=1.3e-07 Score=93.14 Aligned_cols=99 Identities=21% Similarity=0.114 Sum_probs=73.5
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRAD 101 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~ 101 (304)
.++|+.|.+.+++++.++.. .++|++|+++++ +++.+|. ..++|++|++++|. +..++... .
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~l---------p~~Lk~LdLs~N-~LtsLP~-----lp~sL~~L~Ls~N~-L~~Lp~lp--~ 282 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPAL---------PPELRTLEVSGN-QLTSLPV-----LPPGLLELSIFSNP-LTHLPALP--S 282 (788)
T ss_pred hcCCCEEEccCCcCCCCCCC---------CCCCcEEEecCC-ccCcccC-----cccccceeeccCCc-hhhhhhch--h
Confidence 35789999998888876543 688999999886 7888743 24788999998885 66655322 6
Q ss_pred ccceeecccCccceecCCCcccCCCCccceeeeccccccccccc
Q 039067 102 QLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 102 ~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 145 (304)
+|+.|+++++ +++.++. .+++|+.|+++++ +++.+|.
T Consensus 283 ~L~~L~Ls~N-~Lt~LP~-----~p~~L~~LdLS~N-~L~~Lp~ 319 (788)
T PRK15387 283 GLCKLWIFGN-QLTSLPV-----LPPGLQELSVSDN-QLASLPA 319 (788)
T ss_pred hcCEEECcCC-ccccccc-----cccccceeECCCC-ccccCCC
Confidence 7888888887 6776664 2578999999887 5777664
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.63 E-value=1.1e-07 Score=93.54 Aligned_cols=77 Identities=21% Similarity=0.153 Sum_probs=46.6
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRAD 101 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~ 101 (304)
+++|+.|++++|+++.++.. .++|+.|++.++ .++.++. .+.+|++|++++|. ++.++.. .+
T Consensus 241 p~~Lk~LdLs~N~LtsLP~l---------p~sL~~L~Ls~N-~L~~Lp~-----lp~~L~~L~Ls~N~-Lt~LP~~--p~ 302 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVL---------PPGLLELSIFSN-PLTHLPA-----LPSGLCKLWIFGNQ-LTSLPVL--PP 302 (788)
T ss_pred CCCCcEEEecCCccCcccCc---------ccccceeeccCC-chhhhhh-----chhhcCEEECcCCc-ccccccc--cc
Confidence 58999999999988877643 567777777765 4555532 12455666666653 4444332 14
Q ss_pred ccceeecccCccceec
Q 039067 102 QLTTLGLQYLPKLRCL 117 (304)
Q Consensus 102 ~L~~L~L~~c~~L~~~ 117 (304)
+|+.|+++++ +++.+
T Consensus 303 ~L~~LdLS~N-~L~~L 317 (788)
T PRK15387 303 GLQELSVSDN-QLASL 317 (788)
T ss_pred ccceeECCCC-ccccC
Confidence 5666666554 44443
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.60 E-value=7.1e-09 Score=96.89 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=34.0
Q ss_pred cccccccccceeecccccCcccccCCCCcCCCCCCcccEEEEecCCCceeccCCC
Q 039067 248 KHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCARNAESSTPN 302 (304)
Q Consensus 248 ~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~ 302 (304)
..+..+++|+.|.++.. .|..+++. +--++.|+.|+++.-|+|.-=+-|+
T Consensus 333 EglcRC~kL~kL~L~~N-rLiTLPea----IHlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLDHN-RLITLPEA----IHLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred hhhhhhHHHHHhccccc-ceeechhh----hhhcCCcceeeccCCcCccCCCCcc
Confidence 34556778888888754 45445332 3467889999999999887655554
No 13
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.47 E-value=3.3e-09 Score=94.58 Aligned_cols=217 Identities=15% Similarity=0.109 Sum_probs=108.9
Q ss_pred cCCccceeeecce-eeeeecccC-CCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhc--
Q 039067 21 ALPNLEALEISEI-NVNKIWHYN-HLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIIS-- 96 (304)
Q Consensus 21 ~~~~L~~L~L~~~-~l~~~~~~~-~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~-- 96 (304)
.+||++.|.+.+| ++++.-... .. .+++|+.|.+..|..+++..-...+..+++|++|.+++|+.+..=..
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~-----~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~ 236 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLAR-----YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQA 236 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHH-----hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchH
Confidence 3566666666666 444311110 11 15666666666666665553333445566666666666665543000
Q ss_pred -ccCCCccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCCCCCCCCCCCcccccccccccccceec
Q 039067 97 -ENRADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQNNENDQLGIPEQQLLWPLEKSLRVTV 175 (304)
Q Consensus 97 -~~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~ 175 (304)
..+...++++.+.+|..+..-.........+-+..+++.+|..+++.. +|.
T Consensus 237 ~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~-------------------~~~--------- 288 (483)
T KOG4341|consen 237 LQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED-------------------LWL--------- 288 (483)
T ss_pred HhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH-------------------HHH---------
Confidence 001123444544455443322222222233334444444554343221 000
Q ss_pred cccccceeeeeccchhcccccEEEeccccc---cccccccCccccccCccccc--ccCCCCcccchhhhhhccCcccccc
Q 039067 176 DHQLTSLVIMIDDDQIVSNFKELSLSGKDV---KMILQADFPQHLFGSLKQLE--IVGDDSTCFPIWNVFSEEGSLEKHV 250 (304)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~---~~~~~~~~~~~~l~~L~~L~--~c~~~~~~~p~~~~~~l~~~~~~~~ 250 (304)
..-.+..|+.|+.++|.. ..+| ...++.++|+.+. .|....+.--. ..-
T Consensus 289 ------------i~~~c~~lq~l~~s~~t~~~d~~l~---aLg~~~~~L~~l~l~~c~~fsd~~ft-----------~l~ 342 (483)
T KOG4341|consen 289 ------------IACGCHALQVLCYSSCTDITDEVLW---ALGQHCHNLQVLELSGCQQFSDRGFT-----------MLG 342 (483)
T ss_pred ------------HhhhhhHhhhhcccCCCCCchHHHH---HHhcCCCceEEEeccccchhhhhhhh-----------hhh
Confidence 111256778888887765 2233 1235667777777 66554432111 112
Q ss_pred ccccccceeecccccCcccccCCCCcCCCCCCcccEEEEecCCCceec
Q 039067 251 GKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCARNAES 298 (304)
Q Consensus 251 ~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~~L~~l 298 (304)
.+.+.|+.+.+.+|.....- .-.+...+++.||.+.++.|..++.-
T Consensus 343 rn~~~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 343 RNCPHLERLDLEECGLITDG--TLASLSRNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred cCChhhhhhcccccceehhh--hHhhhccCCchhccCChhhhhhhhhh
Confidence 24677888888877543322 11223568999999999999887654
No 14
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.38 E-value=2.9e-07 Score=92.25 Aligned_cols=105 Identities=21% Similarity=0.163 Sum_probs=64.4
Q ss_pred CCccceeeeccee--eeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccC
Q 039067 22 LPNLEALEISEIN--VNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENR 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~--l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~ 99 (304)
.++|++|-+.++. +..+....+.. ++.|++|++++|..+..+|.. ++.+-+||+|++++.. +..+|....
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~-----m~~LrVLDLs~~~~l~~LP~~--I~~Li~LryL~L~~t~-I~~LP~~l~ 615 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRS-----LPLLRVLDLSGNSSLSKLPSS--IGELVHLRYLDLSDTG-ISHLPSGLG 615 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhh-----CcceEEEECCCCCccCcCChH--HhhhhhhhcccccCCC-ccccchHHH
Confidence 4456666666652 33322221221 788888888888777777432 4667788888887775 666654432
Q ss_pred -CCccceeecccCccceecCCCcccCCCCccceeeecc
Q 039067 100 -ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRH 136 (304)
Q Consensus 100 -~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~ 136 (304)
..+|.+|++.....+..++.. ...+++|+.|.+..
T Consensus 616 ~Lk~L~~Lnl~~~~~l~~~~~i--~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGRLESIPGI--LLELQSLRVLRLPR 651 (889)
T ss_pred HHHhhheeccccccccccccch--hhhcccccEEEeec
Confidence 267777777777666666322 22377788777754
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=6.5e-08 Score=86.89 Aligned_cols=186 Identities=19% Similarity=0.197 Sum_probs=95.6
Q ss_pred cCCccceeeecceeeeeeccc-CCCCCccCCCCCccEEeeccCcccccccc-hhhhhcCCcccEEeeccCccccchhccc
Q 039067 21 ALPNLEALEISEINVNKIWHY-NHLPVMFPRFQNLTRLIVWRCHKLKYIFS-ASMIGSLKQLQHLDIRHCEDLQEIISEN 98 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~C~~l~~l~~-~~~~~~l~~L~~L~i~~c~~l~~l~~~~ 98 (304)
.+..|++..|+++.+...+.. .... |++++.|++++. -+.++.+ ..++..||+|+.|.++.+. +....+..
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~-----~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~ 191 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKI-----LPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSN 191 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhh-----CCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc-ccCCcccc
Confidence 466667777777755544431 1122 777777777763 3333322 2345667777777777765 22111110
Q ss_pred ---CCCccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCCCCCCCCCCCcccccccccccccceec
Q 039067 99 ---RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQNNENDQLGIPEQQLLWPLEKSLRVTV 175 (304)
Q Consensus 99 ---~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~ 175 (304)
..+.|+.|.++.| .|..-........||+|+.|.+.....+...
T Consensus 192 ~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-------------------------------- 238 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIK-------------------------------- 238 (505)
T ss_pred chhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhccccccee--------------------------------
Confidence 1166667777666 3331111112234666666666554311100
Q ss_pred cccccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc--ccCCCCcccchhhhhhccCccccccccc
Q 039067 176 DHQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE--IVGDDSTCFPIWNVFSEEGSLEKHVGKL 253 (304)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~--~c~~~~~~~p~~~~~~l~~~~~~~~~~l 253 (304)
....+++..|++|+|++++....-+ ..-...|+.|..|. .|+--...+|.. +...-...+
T Consensus 239 ----------~~~~~i~~~L~~LdLs~N~li~~~~-~~~~~~l~~L~~Lnls~tgi~si~~~d~-------~s~~kt~~f 300 (505)
T KOG3207|consen 239 ----------ATSTKILQTLQELDLSNNNLIDFDQ-GYKVGTLPGLNQLNLSSTGIASIAEPDV-------ESLDKTHTF 300 (505)
T ss_pred ----------cchhhhhhHHhhccccCCccccccc-ccccccccchhhhhccccCcchhcCCCc-------cchhhhccc
Confidence 0123357888889988887532211 02235677777777 333222223320 001113468
Q ss_pred cccceeecccc
Q 039067 254 AMIKELKLYRP 264 (304)
Q Consensus 254 ~~L~~L~l~~c 264 (304)
++|++|.+...
T Consensus 301 ~kL~~L~i~~N 311 (505)
T KOG3207|consen 301 PKLEYLNISEN 311 (505)
T ss_pred ccceeeecccC
Confidence 88888888765
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.6e-07 Score=83.13 Aligned_cols=15 Identities=13% Similarity=0.366 Sum_probs=11.9
Q ss_pred hcccccEEEeccccc
Q 039067 191 IVSNFKELSLSGKDV 205 (304)
Q Consensus 191 ~~~~L~~L~l~~c~~ 205 (304)
.+++|+.|.+..++.
T Consensus 299 ~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 299 TFPKLEYLNISENNI 313 (505)
T ss_pred ccccceeeecccCcc
Confidence 478888888887764
No 17
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=1.6e-06 Score=57.78 Aligned_cols=60 Identities=27% Similarity=0.325 Sum_probs=47.5
Q ss_pred CccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCc
Q 039067 23 PNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCE 89 (304)
Q Consensus 23 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~ 89 (304)
|+|++|.+++|+++.+....+.. +++|++|+++++ +++.+++ ..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~-----l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSN-----LPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTT-----GTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcC-----CCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCCc
Confidence 67899999999888887655444 799999999865 7888844 455788999999998875
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.26 E-value=1.1e-07 Score=89.28 Aligned_cols=22 Identities=27% Similarity=0.123 Sum_probs=18.0
Q ss_pred cccccceeecccccCcccccCC
Q 039067 252 KLAMIKELKLYRPYHLKQLGKQ 273 (304)
Q Consensus 252 ~l~~L~~L~l~~c~~L~~i~~~ 273 (304)
-++.|+.|++.+.|+|..-++.
T Consensus 360 lL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 360 LLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred hcCCcceeeccCCcCccCCCCc
Confidence 5789999999999999766554
No 19
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.08 E-value=2.1e-05 Score=71.78 Aligned_cols=58 Identities=17% Similarity=0.338 Sum_probs=25.7
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCCccceeecccCccce
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRADQLTTLGLQYLPKLR 115 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~L~~c~~L~ 115 (304)
+.+++.|++++| .++.+|. --++|+.|.+++|.+++.++... .++|+.|.+++|+++.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV-----LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEIS 108 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC-----CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccc
Confidence 355555555555 4544421 01245555555555444433211 1344444444444443
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.07 E-value=3.9e-06 Score=68.19 Aligned_cols=105 Identities=18% Similarity=0.158 Sum_probs=37.8
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc--cC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE--NR 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~ 99 (304)
..++++|+|.++.+..+-.-... +.+|+.|+++++ .++.+. ....+++|++|+++++. +..+... ..
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~------l~~L~~L~Ls~N-~I~~l~---~l~~L~~L~~L~L~~N~-I~~i~~~l~~~ 86 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGAT------LDKLEVLDLSNN-QITKLE---GLPGLPRLKTLDLSNNR-ISSISEGLDKN 86 (175)
T ss_dssp ------------------S--TT-------TT--EEE-TTS---S--T---T----TT--EEE--SS----S-CHHHHHH
T ss_pred ccccccccccccccccccchhhh------hcCCCEEECCCC-CCcccc---CccChhhhhhcccCCCC-CCccccchHHh
Confidence 44689999999977766321111 789999999997 788873 34568999999999986 6655321 12
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeecccc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCD 138 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~ 138 (304)
.|+|++|.+++. ++..+........+++|+.|.+.+.|
T Consensus 87 lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 87 LPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence 389999999876 66666554445578999999999886
No 21
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.00 E-value=1.6e-05 Score=72.56 Aligned_cols=72 Identities=17% Similarity=0.324 Sum_probs=54.6
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCC
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRA 100 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 100 (304)
.+++++.|++++|.++.++.- -.+|++|.+.+|..++.++. .. .++|++|++++|.++..++
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~L---------P~sLtsL~Lsnc~nLtsLP~-~L---P~nLe~L~Ls~Cs~L~sLP----- 111 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVL---------PNELTEITIENCNNLTTLPG-SI---PEGLEKLTVCHCPEISGLP----- 111 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCC---------CCCCcEEEccCCCCcccCCc-hh---hhhhhheEccCcccccccc-----
Confidence 468999999999988777521 35799999999999988742 22 2689999999998787665
Q ss_pred Cccceeeccc
Q 039067 101 DQLTTLGLQY 110 (304)
Q Consensus 101 ~~L~~L~L~~ 110 (304)
+.|+.|.+..
T Consensus 112 ~sLe~L~L~~ 121 (426)
T PRK15386 112 ESVRSLEIKG 121 (426)
T ss_pred cccceEEeCC
Confidence 5577776643
No 22
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=3.5e-07 Score=78.72 Aligned_cols=86 Identities=14% Similarity=0.142 Sum_probs=53.3
Q ss_pred CCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc-cCCCccceeecccCccceecCCCcccCCCCccc
Q 039067 52 QNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE-NRADQLTTLGLQYLPKLRCLYPGMHTSEWPALE 130 (304)
Q Consensus 52 ~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~-~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~ 130 (304)
..||.|++++- .++.-..-.+...+.+|+.|++.+..---.+... ....+|+.|+++.|..+++........++..|.
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 35777777753 3332222234456778888887776421112111 112688899999888888766544445688888
Q ss_pred eeeecccc
Q 039067 131 SLLVRHCD 138 (304)
Q Consensus 131 ~L~l~~C~ 138 (304)
.|+++.|.
T Consensus 264 ~LNlsWc~ 271 (419)
T KOG2120|consen 264 ELNLSWCF 271 (419)
T ss_pred hcCchHhh
Confidence 88888885
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.89 E-value=4.8e-06 Score=83.66 Aligned_cols=81 Identities=22% Similarity=0.219 Sum_probs=63.7
Q ss_pred cCCccceeeecce-eeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccC
Q 039067 21 ALPNLEALEISEI-NVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENR 99 (304)
Q Consensus 21 ~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~ 99 (304)
.+|.|++|+|++| .+.+++..... +-+||+|++++. .++.+| .+ .+.|..|.+|++.....+..+++...
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~~------Li~LryL~L~~t-~I~~LP-~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~ 639 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIGE------LVHLRYLDLSDT-GISHLP-SG-LGNLKKLIYLNLEVTGRLESIPGILL 639 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHhh------hhhhhcccccCC-Cccccc-hH-HHHHHhhheeccccccccccccchhh
Confidence 5899999999999 77777766443 899999999985 788884 33 57899999999999887766643332
Q ss_pred -CCccceeeccc
Q 039067 100 -ADQLTTLGLQY 110 (304)
Q Consensus 100 -~~~L~~L~L~~ 110 (304)
.++|++|.+..
T Consensus 640 ~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 640 ELQSLRVLRLPR 651 (889)
T ss_pred hcccccEEEeec
Confidence 48899988854
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.88 E-value=1.1e-06 Score=85.61 Aligned_cols=200 Identities=22% Similarity=0.214 Sum_probs=109.0
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccC-
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENR- 99 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~- 99 (304)
.++||+.|....+++..+...... ..+|+.|.+.+| .++++++. ...+..|+.|++..+. +..++....
T Consensus 262 ~~~nle~l~~n~N~l~~lp~ri~~------~~~L~~l~~~~n-el~yip~~--le~~~sL~tLdL~~N~-L~~lp~~~l~ 331 (1081)
T KOG0618|consen 262 ACANLEALNANHNRLVALPLRISR------ITSLVSLSAAYN-ELEYIPPF--LEGLKSLRTLDLQSNN-LPSLPDNFLA 331 (1081)
T ss_pred hcccceEecccchhHHhhHHHHhh------hhhHHHHHhhhh-hhhhCCCc--ccccceeeeeeehhcc-ccccchHHHh
Confidence 477788888877766544333222 456666666665 56666443 2345666666666553 332222111
Q ss_pred --------------------------CCccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCCCCCC
Q 039067 100 --------------------------ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQNNEN 153 (304)
Q Consensus 100 --------------------------~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~l~~ 153 (304)
.+.|+.|.+-+. .|..-.+.. ...+..|+.|+++.. .|..+|....
T Consensus 332 v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p~-l~~~~hLKVLhLsyN-rL~~fpas~~----- 403 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN-HLTDSCFPV-LVNFKHLKVLHLSYN-RLNSFPASKL----- 403 (1081)
T ss_pred hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-cccccchhh-hccccceeeeeeccc-ccccCCHHHH-----
Confidence 134444444433 222211111 124566777776665 3666654211
Q ss_pred CCCCCcccccccccccccceeccccccceeeeeccchhcccccEEEeccccccccccccCccccccCcccccccCCCCcc
Q 039067 154 DQLGIPEQQLLWPLEKSLRVTVDHQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLEIVGDDSTC 233 (304)
Q Consensus 154 ~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~~c~~~~~~ 233 (304)
..++.|++|.++++.-..+. .....+..|+.|..+.+....
T Consensus 404 ------------------------------------~kle~LeeL~LSGNkL~~Lp---~tva~~~~L~tL~ahsN~l~~ 444 (1081)
T KOG0618|consen 404 ------------------------------------RKLEELEELNLSGNKLTTLP---DTVANLGRLHTLRAHSNQLLS 444 (1081)
T ss_pred ------------------------------------hchHHhHHHhcccchhhhhh---HHHHhhhhhHHHhhcCCceee
Confidence 12567778888887754332 113466777777766666667
Q ss_pred cchhhhhhccCccccccccccccceeecccccCcccccCCCCcCCCCCCcccEEEEecCCC
Q 039067 234 FPIWNVFSEEGSLEKHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCAR 294 (304)
Q Consensus 234 ~p~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~~ 294 (304)
||.. ..+++|+.++++ |.+|+.+-... ...-++|++|+++|-.+
T Consensus 445 fPe~-------------~~l~qL~~lDlS-~N~L~~~~l~~---~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 445 FPEL-------------AQLPQLKVLDLS-CNNLSEVTLPE---ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred chhh-------------hhcCcceEEecc-cchhhhhhhhh---hCCCcccceeeccCCcc
Confidence 8842 257788888887 34565553321 11226788888877664
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.86 E-value=2.6e-06 Score=83.24 Aligned_cols=87 Identities=21% Similarity=0.225 Sum_probs=62.0
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccC-CCccceeecccCccceecCCCcccCCCCcc
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENR-ADQLTTLGLQYLPKLRCLYPGMHTSEWPAL 129 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~-~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L 129 (304)
-.+|+++++++. ++..+| .++..+++|+.+++..+. +..++.... ..+|+.|.+..+ .++.++... ..+.+|
T Consensus 240 p~nl~~~dis~n-~l~~lp--~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~~l--e~~~sL 312 (1081)
T KOG0618|consen 240 PLNLQYLDISHN-NLSNLP--EWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPPFL--EGLKSL 312 (1081)
T ss_pred cccceeeecchh-hhhcch--HHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcc--ccccee
Confidence 468888888874 677773 677788888888887775 555543322 267777777766 667666643 357899
Q ss_pred ceeeeccccccccccc
Q 039067 130 ESLLVRHCDKLKIFAA 145 (304)
Q Consensus 130 ~~L~l~~C~~L~~l~~ 145 (304)
++|++... +|..+|.
T Consensus 313 ~tLdL~~N-~L~~lp~ 327 (1081)
T KOG0618|consen 313 RTLDLQSN-NLPSLPD 327 (1081)
T ss_pred eeeeehhc-cccccch
Confidence 99999887 6888876
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=2.1e-06 Score=73.95 Aligned_cols=114 Identities=19% Similarity=0.194 Sum_probs=74.5
Q ss_pred CCccceeeecceeeee-ecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc---
Q 039067 22 LPNLEALEISEINVNK-IWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE--- 97 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~-~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~--- 97 (304)
+..|+.|.|.|..+.+ +...... -.+|+.|++++|.++++....-+..++.+|..|++++|...++.+-.
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAk------N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~ 282 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAK------NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA 282 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhc------cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh
Confidence 5566667777665543 2222223 48999999999999988755556778999999999999865543211
Q ss_pred cCCCccceeecccCccceecC-CCcccCCCCccceeeeccccccc
Q 039067 98 NRADQLTTLGLQYLPKLRCLY-PGMHTSEWPALESLLVRHCDKLK 141 (304)
Q Consensus 98 ~~~~~L~~L~L~~c~~L~~~~-~~~~~~~l~~L~~L~l~~C~~L~ 141 (304)
.-.++|+.|.+++|.+--... ..-....+|+|.+|++++|..|+
T Consensus 283 hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 283 HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 112788888888876422211 11112357788888888876665
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.78 E-value=2e-06 Score=68.58 Aligned_cols=105 Identities=18% Similarity=0.143 Sum_probs=57.3
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCC-
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRA- 100 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~- 100 (304)
+.++..|.|+++++..++..... +.+|+.|++++. .++++|+. +..+|+|+.|.+.-++ +..++.+.+.
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~------l~nlevln~~nn-qie~lp~~--issl~klr~lnvgmnr-l~~lprgfgs~ 101 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAE------LKNLEVLNLSNN-QIEELPTS--ISSLPKLRILNVGMNR-LNILPRGFGSF 101 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHH------hhhhhhhhcccc-hhhhcChh--hhhchhhhheecchhh-hhcCccccCCC
Confidence 66777777777777666554333 677777777663 66666433 3566777777775443 4334433322
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeeccc
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHC 137 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C 137 (304)
|.|+.|++... +|.+-........++.|+-|.+.+.
T Consensus 102 p~levldltyn-nl~e~~lpgnff~m~tlralyl~dn 137 (264)
T KOG0617|consen 102 PALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDN 137 (264)
T ss_pred chhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCC
Confidence 66666666554 3333222222223344444444443
No 28
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.74 E-value=5e-05 Score=50.40 Aligned_cols=56 Identities=27% Similarity=0.290 Sum_probs=34.2
Q ss_pred CCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--CCCccceeeccc
Q 039067 52 QNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--RADQLTTLGLQY 110 (304)
Q Consensus 52 ~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~~~L~~L~L~~ 110 (304)
++|++|++++| +++.+++ ..+..+++|++|++++|. +..++... +.++|+.|++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~-~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPP-DSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TTESEEEETSS-TESEECT-TTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETS
T ss_pred CcCcEEECCCC-CCCccCH-HHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcC
Confidence 56788888887 7777743 445677888888888664 55444322 124444444444
No 29
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.70 E-value=1.6e-05 Score=71.29 Aligned_cols=95 Identities=16% Similarity=0.067 Sum_probs=52.4
Q ss_pred hcccccEEEeccccccccccccCccccccCcccccccCCCCcccchhh--hhhcc---------C-ccccccccccccce
Q 039067 191 IVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLEIVGDDSTCFPIWN--VFSEE---------G-SLEKHVGKLAMIKE 258 (304)
Q Consensus 191 ~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~~c~~~~~~~p~~~--~~~l~---------~-~~~~~~~~l~~L~~ 258 (304)
++++|..|+++++.-..+- .....+..|+.+.-..+.....|... .+.++ . -.+..+.++..|..
T Consensus 433 ~l~kLt~L~L~NN~Ln~LP---~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNLLNDLP---EEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred hhhcceeeecccchhhhcc---hhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 4677777877776543221 11233444555551111222344321 11111 0 11123556778888
Q ss_pred eecccccCcccccCCCCcCCCCCCcccEEEEecCC
Q 039067 259 LKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCA 293 (304)
Q Consensus 259 L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~ 293 (304)
|++.+. .++.++.. ...+.+|++|+++|-|
T Consensus 510 LDL~nN-dlq~IPp~----LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 510 LDLQNN-DLQQIPPI----LGNMTNLRHLELDGNP 539 (565)
T ss_pred eccCCC-chhhCChh----hccccceeEEEecCCc
Confidence 888875 67777443 4589999999999876
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.60 E-value=3e-05 Score=69.40 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=53.5
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENR 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~ 99 (304)
.+.-..+.|+-++++.|+.+.+.. +++|++|++++. .+..+.|. .++.+++|-.|.+.+...|+++++...
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~-----l~~LRrLdLS~N-~Is~I~p~-AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKT-----LHRLRRLDLSKN-NISFIAPD-AFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred CCcceEEEeccCCcccCChhhccc-----hhhhceeccccc-chhhcChH-hhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 345677888888888888776554 899999999884 67777543 446788888888888777888877644
No 31
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.57 E-value=6.2e-06 Score=65.78 Aligned_cols=113 Identities=20% Similarity=0.229 Sum_probs=78.5
Q ss_pred ccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCcccc-chhccc
Q 039067 20 VALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQ-EIISEN 98 (304)
Q Consensus 20 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~-~l~~~~ 98 (304)
..+.||++|.+.++++++++..... +++|+.|++.- .++.-+ |-+ ++.||-|+.||++++.--+ .+++..
T Consensus 53 a~l~nlevln~~nnqie~lp~~iss------l~klr~lnvgm-nrl~~l-prg-fgs~p~levldltynnl~e~~lpgnf 123 (264)
T KOG0617|consen 53 AELKNLEVLNLSNNQIEELPTSISS------LPKLRILNVGM-NRLNIL-PRG-FGSFPALEVLDLTYNNLNENSLPGNF 123 (264)
T ss_pred HHhhhhhhhhcccchhhhcChhhhh------chhhhheecch-hhhhcC-ccc-cCCCchhhhhhccccccccccCCcch
Confidence 3489999999999998887765433 89999999964 566666 433 4789999999999874211 112211
Q ss_pred C------------------------CCccceeecccCccceecCCCcccCCCCccceeeeccccccccccc
Q 039067 99 R------------------------ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 99 ~------------------------~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 145 (304)
+ ..+|+.|.+++. .|-++|.. ...++.|++|+|.+. .|+.+|.
T Consensus 124 f~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke--ig~lt~lrelhiqgn-rl~vlpp 190 (264)
T KOG0617|consen 124 FYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE--IGDLTRLRELHIQGN-RLTVLPP 190 (264)
T ss_pred hHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH--HHHHHHHHHHhcccc-eeeecCh
Confidence 1 156777777665 45555553 356888999999887 5887775
No 32
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.53 E-value=1.2e-05 Score=75.82 Aligned_cols=91 Identities=21% Similarity=0.209 Sum_probs=44.8
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCcccEEeeccC-ccccchh-----cccCCCccceeecccCccceecCCCcccC
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHC-EDLQEII-----SENRADQLTTLGLQYLPKLRCLYPGMHTS 124 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c-~~l~~l~-----~~~~~~~L~~L~L~~c~~L~~~~~~~~~~ 124 (304)
+++|+.|.+.+|..+....-...+..+++|+.|++++| ....... ......+|+.|+++.|..+..........
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666666666655321233445666666666653 2211110 00111556666666665444443332222
Q ss_pred CCCccceeeeccccccc
Q 039067 125 EWPALESLLVRHCDKLK 141 (304)
Q Consensus 125 ~l~~L~~L~l~~C~~L~ 141 (304)
.+++|+.|.+.+|..++
T Consensus 267 ~c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLT 283 (482)
T ss_pred hCCCcceEccCCCCccc
Confidence 35666666666665544
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.46 E-value=2.4e-05 Score=69.80 Aligned_cols=112 Identities=19% Similarity=0.055 Sum_probs=61.0
Q ss_pred cCCccceeeecceeeee-----ecccCCCCCccCCCCCccEEeeccCccccccc-----chhhhhcCCcccEEeeccCcc
Q 039067 21 ALPNLEALEISEINVNK-----IWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIF-----SASMIGSLKQLQHLDIRHCED 90 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~-----~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~-----~~~~~~~l~~L~~L~i~~c~~ 90 (304)
.+++|++|.++++.++. +...... +++|++|.++++. +...+ .......+++|++|++++|.-
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~------~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRP------QPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhh------CCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 36668899999886633 2111111 6778888887753 22100 011234577888888888863
Q ss_pred ccchhcc----cCCCccceeecccCccceecCCC---cccCCC-Cccceeeeccccccc
Q 039067 91 LQEIISE----NRADQLTTLGLQYLPKLRCLYPG---MHTSEW-PALESLLVRHCDKLK 141 (304)
Q Consensus 91 l~~l~~~----~~~~~L~~L~L~~c~~L~~~~~~---~~~~~l-~~L~~L~l~~C~~L~ 141 (304)
-...... ...++|++|++++|. +...... .....+ ++|+.|++.+|. ++
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~ 150 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LE 150 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc-CC
Confidence 2111110 001458888888773 3311100 011234 788888888884 54
No 34
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.30 E-value=1.8e-06 Score=77.14 Aligned_cols=109 Identities=23% Similarity=0.238 Sum_probs=60.8
Q ss_pred CccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccC-CC
Q 039067 23 PNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENR-AD 101 (304)
Q Consensus 23 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~-~~ 101 (304)
.-|.+|.+++++++.+-..... ++.|.+|++.+. ++..+|+. ++.+..++.+++++.. +.+++...+ .+
T Consensus 45 v~l~~lils~N~l~~l~~dl~n------L~~l~vl~~~~n-~l~~lp~a--ig~l~~l~~l~vs~n~-ls~lp~~i~s~~ 114 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKN------LACLTVLNVHDN-KLSQLPAA--IGELEALKSLNVSHNK-LSELPEQIGSLI 114 (565)
T ss_pred cchhhhhhccCchhhccHhhhc------ccceeEEEeccc-hhhhCCHH--HHHHHHHHHhhcccch-HhhccHHHhhhh
Confidence 3466777777755544322211 677777777774 56666433 4566777777777764 544544322 35
Q ss_pred ccceeecccCccceecCCCcccCCCCccceeeeccccccccccc
Q 039067 102 QLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 102 ~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 145 (304)
.|..|+.+.. ++..++.+. +.+..|+.+.-.+. ++.++|.
T Consensus 115 ~l~~l~~s~n-~~~el~~~i--~~~~~l~dl~~~~N-~i~slp~ 154 (565)
T KOG0472|consen 115 SLVKLDCSSN-ELKELPDSI--GRLLDLEDLDATNN-QISSLPE 154 (565)
T ss_pred hhhhhhcccc-ceeecCchH--HHHhhhhhhhcccc-ccccCch
Confidence 6666666554 455555432 34556666655544 3555554
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.17 E-value=8.1e-05 Score=66.35 Aligned_cols=114 Identities=16% Similarity=0.044 Sum_probs=60.4
Q ss_pred cCCccceeeecceeeee---ecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcC---CcccEEeeccCccccc-
Q 039067 21 ALPNLEALEISEINVNK---IWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSL---KQLQHLDIRHCEDLQE- 93 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~---~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l---~~L~~L~i~~c~~l~~- 93 (304)
..++|+.|.++++.+.. .|....... ..+++|+.|++++|.--... +. ....+ ++|++|++++|. +..
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~-~~-~~~~l~~~~~L~~L~ls~~~-~~~~ 123 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGL--TKGCGLQELDLSDNALGPDG-CG-VLESLLRSSSLQELKLNNNG-LGDR 123 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHH--HhcCceeEEEccCCCCChhH-HH-HHHHHhccCcccEEEeeCCc-cchH
Confidence 46778888888874441 121111000 01568888888887432222 21 12233 348888888885 331
Q ss_pred ----hhcc-cCC-CccceeecccCccceecCC---CcccCCCCccceeeeccccccc
Q 039067 94 ----IISE-NRA-DQLTTLGLQYLPKLRCLYP---GMHTSEWPALESLLVRHCDKLK 141 (304)
Q Consensus 94 ----l~~~-~~~-~~L~~L~L~~c~~L~~~~~---~~~~~~l~~L~~L~l~~C~~L~ 141 (304)
+... ... ++|++|++++|. ++.-.. ......++.|+.|++.+|. ++
T Consensus 124 ~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~ 178 (319)
T cd00116 124 GLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNG-IG 178 (319)
T ss_pred HHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCC-Cc
Confidence 1111 112 688888888873 331100 0011235678888888773 44
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.10 E-value=0.00011 Score=63.67 Aligned_cols=115 Identities=23% Similarity=0.216 Sum_probs=73.9
Q ss_pred cccccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhc
Q 039067 17 NEKVALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIIS 96 (304)
Q Consensus 17 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~ 96 (304)
.+.-.+.-|++|+|+++.++.+-.+... .|.++.|++++. ++..+ ...+.+++|+.||++++. +.++.+
T Consensus 278 ~~~dTWq~LtelDLS~N~I~~iDESvKL------~Pkir~L~lS~N-~i~~v---~nLa~L~~L~~LDLS~N~-Ls~~~G 346 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLITQIDESVKL------APKLRRLILSQN-RIRTV---QNLAELPQLQLLDLSGNL-LAECVG 346 (490)
T ss_pred EecchHhhhhhccccccchhhhhhhhhh------ccceeEEecccc-ceeee---hhhhhcccceEeecccch-hHhhhh
Confidence 3344477788888888877766544333 688888888885 56555 224678888888888764 332222
Q ss_pred ccC-----------------------CCccceeecccCccceecCCCcccCCCCccceeeecccccccccc
Q 039067 97 ENR-----------------------ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFA 144 (304)
Q Consensus 97 ~~~-----------------------~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 144 (304)
... .-+|..|++++. +++.+.....++++|+|+++.+.+.| +...+
T Consensus 347 wh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 347 WHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred hHhhhcCEeeeehhhhhHhhhhhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 100 045666666664 45555555566789999999888876 54443
No 37
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.09 E-value=0.00014 Score=71.48 Aligned_cols=109 Identities=18% Similarity=0.209 Sum_probs=54.9
Q ss_pred CCccceeeecce-eeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCC
Q 039067 22 LPNLEALEISEI-NVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRA 100 (304)
Q Consensus 22 ~~~L~~L~L~~~-~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 100 (304)
-.||+.|+++|. .+..-|....... ||+|++|.+.+-.-...-+ .....+||+|..||||++. +..+.+-...
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~----LPsL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~L 194 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTM----LPSLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGTN-ISNLSGISRL 194 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhh----CcccceEEecCceecchhH-HHHhhccCccceeecCCCC-ccCcHHHhcc
Confidence 356666666666 4444443331111 6777777776632111110 1123467777777777764 5555443444
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeeccc
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHC 137 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C 137 (304)
++|++|.+.++. ++..........+++|+.|+|+.=
T Consensus 195 knLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 195 KNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred ccHHHHhccCCC-CCchhhHHHHhcccCCCeeecccc
Confidence 666666665552 222221112335666666666653
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.07 E-value=0.00082 Score=54.68 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=35.6
Q ss_pred cccc-cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccch-
Q 039067 17 NEKV-ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEI- 94 (304)
Q Consensus 17 ~~~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l- 94 (304)
+... .+.+|++|++++|+++.+..- .. +++|++|++++. +++++.. .....+|+|++|.++++. +..+
T Consensus 35 e~L~~~l~~L~~L~Ls~N~I~~l~~l-~~------L~~L~~L~L~~N-~I~~i~~-~l~~~lp~L~~L~L~~N~-I~~l~ 104 (175)
T PF14580_consen 35 ENLGATLDKLEVLDLSNNQITKLEGL-PG------LPRLKTLDLSNN-RISSISE-GLDKNLPNLQELYLSNNK-ISDLN 104 (175)
T ss_dssp -S--TT-TT--EEE-TTS--S--TT-----------TT--EEE--SS----S-CH-HHHHH-TT--EEE-TTS----SCC
T ss_pred cchhhhhcCCCEEECCCCCCccccCc-cC------hhhhhhcccCCC-CCCcccc-chHHhCCcCCEEECcCCc-CCChH
Confidence 4444 478999999999988876421 11 899999999985 7888732 233468999999999875 4433
Q ss_pred --hcccCCCccceeecccCc
Q 039067 95 --ISENRADQLTTLGLQYLP 112 (304)
Q Consensus 95 --~~~~~~~~L~~L~L~~c~ 112 (304)
..-...|+|++|++.+.|
T Consensus 105 ~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 105 ELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp CCGGGGG-TT--EEE-TT-G
T ss_pred HhHHHHcCCCcceeeccCCc
Confidence 211223888888887765
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.63 E-value=0.002 Score=39.67 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=21.7
Q ss_pred CCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccch
Q 039067 52 QNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEI 94 (304)
Q Consensus 52 ~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l 94 (304)
++|++|+++++ +++++++ .+..+++|++|++++|. +..+
T Consensus 1 ~~L~~L~l~~N-~i~~l~~--~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPP--ELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGG--HGTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCC-CCcccCc--hHhCCCCCCEEEecCCC-CCCC
Confidence 35666777665 5666633 13566777777777664 4433
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.51 E-value=0.0043 Score=38.14 Aligned_cols=40 Identities=23% Similarity=0.180 Sum_probs=28.1
Q ss_pred CccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCccccccc
Q 039067 23 PNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIF 69 (304)
Q Consensus 23 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~ 69 (304)
++|++|++++++++++...... +++|+.|+++++ .+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~------l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSN------LPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTT------CTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhC------CCCCCEEEecCC-CCCCCc
Confidence 5789999999988776542222 899999999887 677663
No 41
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.51 E-value=0.00039 Score=65.45 Aligned_cols=116 Identities=22% Similarity=0.215 Sum_probs=76.1
Q ss_pred CCccceeeecce-eeeeecccC-CCCCccCCCCCccEEeeccC-ccccccc--chhhhhcCCcccEEeeccCccccchhc
Q 039067 22 LPNLEALEISEI-NVNKIWHYN-HLPVMFPRFQNLTRLIVWRC-HKLKYIF--SASMIGSLKQLQHLDIRHCEDLQEIIS 96 (304)
Q Consensus 22 ~~~L~~L~L~~~-~l~~~~~~~-~~~~~~~~~~~L~~L~l~~C-~~l~~l~--~~~~~~~l~~L~~L~i~~c~~l~~l~~ 96 (304)
+++|+.|.+.+| ++.+.+-.. ... +++|+.|++.+| ......+ .......+++|+.|++++|..+.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALK-----CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhh-----CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 788888988888 665533211 111 788999999883 3322221 122445678889999988876553321
Q ss_pred c---cCCCccceeecccCccceecCCCcccCCCCccceeeecccccccc
Q 039067 97 E---NRADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKI 142 (304)
Q Consensus 97 ~---~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~ 142 (304)
. ...++|++|.+.+|..++..........+++|++|++++|..++.
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence 1 113788999888888766655554455688899999988877643
No 42
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.47 E-value=0.0011 Score=65.20 Aligned_cols=106 Identities=24% Similarity=0.174 Sum_probs=67.3
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccc---hhccc
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQE---IISEN 98 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~---l~~~~ 98 (304)
||+|+.|.+.|-.+..-+....-.+ ||||..|+|+++ +++.+ .+..++++|+.|.+++.. ++. +..-.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~s----FpNL~sLDIS~T-nI~nl---~GIS~LknLq~L~mrnLe-~e~~~~l~~LF 217 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCAS----FPNLRSLDISGT-NISNL---SGISRLKNLQVLSMRNLE-FESYQDLIDLF 217 (699)
T ss_pred CcccceEEecCceecchhHHHHhhc----cCccceeecCCC-CccCc---HHHhccccHHHHhccCCC-CCchhhHHHHh
Confidence 8999999999985433222221111 999999999997 77777 566789999999887764 321 11112
Q ss_pred CCCccceeecccCccceecCCC----cccCCCCccceeeecc
Q 039067 99 RADQLTTLGLQYLPKLRCLYPG----MHTSEWPALESLLVRH 136 (304)
Q Consensus 99 ~~~~L~~L~L~~c~~L~~~~~~----~~~~~l~~L~~L~l~~ 136 (304)
...+|+.|+++.=.+...-... .....+|.|+.|+.++
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 2388999999765433222000 0112478888887764
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.0028 Score=55.15 Aligned_cols=115 Identities=21% Similarity=0.244 Sum_probs=51.6
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc---
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--- 98 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--- 98 (304)
+|.|++|+|+.+.+..--...+.. ..||++|-+.+- .+......+....+|.+++|+++++. +..+....
T Consensus 96 lP~l~~LNls~N~L~s~I~~lp~p-----~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~ 168 (418)
T KOG2982|consen 96 LPALTTLNLSCNSLSSDIKSLPLP-----LKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCI 168 (418)
T ss_pred CccceEeeccCCcCCCccccCccc-----ccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhccch-hhhhccccccc
Confidence 555566655555433211111111 456666666552 22111112234456666777666653 21111111
Q ss_pred --CCCccceeecccCccceecCCCcccCCCCccceeeecccccccccc
Q 039067 99 --RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFA 144 (304)
Q Consensus 99 --~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 144 (304)
-.+.+++|....|....-.........||++..+.+-.|| +++..
T Consensus 169 e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s 215 (418)
T KOG2982|consen 169 EDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTES 215 (418)
T ss_pred cccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchh
Confidence 1145555555555432211111112247788888777776 55543
No 44
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.00099 Score=54.65 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=39.3
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc--cCCCccceeecccCccce
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE--NRADQLTTLGLQYLPKLR 115 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~~~~L~~L~L~~c~~L~ 115 (304)
++.++.|.+.+|..+-++--..+.+-.++|+.|+|++|+.|++-... ...++|+.|.+.+++...
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 67777777777777655522223335678888888888877632111 111677777776665444
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.90 E-value=0.0015 Score=56.90 Aligned_cols=55 Identities=24% Similarity=0.247 Sum_probs=28.3
Q ss_pred CcccEEeeccCccccchhccc-CCCccceeecccCccceecCCCcccCCCCccceeeeccc
Q 039067 78 KQLQHLDIRHCEDLQEIISEN-RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHC 137 (304)
Q Consensus 78 ~~L~~L~i~~c~~l~~l~~~~-~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C 137 (304)
.-|++||++++. +.++-... -.|+++.|+++.. .+..+.. ...+++|..|++++.
T Consensus 284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N-~i~~v~n---La~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQN-RIRTVQN---LAELPQLQLLDLSGN 339 (490)
T ss_pred hhhhhccccccc-hhhhhhhhhhccceeEEecccc-ceeeehh---hhhcccceEeecccc
Confidence 355666666654 43332111 1266677776665 3333332 224666777776664
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.70 E-value=0.011 Score=54.52 Aligned_cols=103 Identities=26% Similarity=0.305 Sum_probs=60.5
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCC-CccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc-C
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQ-NLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN-R 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~-~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~-~ 99 (304)
+++++.|.+.++++.++...... +. +|+.|++++. .++.++ .....+++|+.|++++|. +.+++... .
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~------~~~nL~~L~l~~N-~i~~l~--~~~~~l~~L~~L~l~~N~-l~~l~~~~~~ 184 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGL------LKSNLKELDLSDN-KIESLP--SPLRNLPNLKNLDLSFND-LSDLPKLLSN 184 (394)
T ss_pred ccceeEEecCCcccccCcccccc------chhhccccccccc-chhhhh--hhhhccccccccccCCch-hhhhhhhhhh
Confidence 46677777777766555433221 32 7777777763 565552 123567777777777775 65555443 3
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeeccc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHC 137 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C 137 (304)
.+.|+.|.+++. +++.++... .....|+++.+.+-
T Consensus 185 ~~~L~~L~ls~N-~i~~l~~~~--~~~~~L~~l~~~~N 219 (394)
T COG4886 185 LSNLNNLDLSGN-KISDLPPEI--ELLSALEELDLSNN 219 (394)
T ss_pred hhhhhheeccCC-ccccCchhh--hhhhhhhhhhhcCC
Confidence 467777777665 566555431 12334666666654
No 47
>PLN03150 hypothetical protein; Provisional
Probab=95.15 E-value=0.04 Score=54.13 Aligned_cols=107 Identities=15% Similarity=0.112 Sum_probs=54.6
Q ss_pred cceeeecceeeee-ecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc-cCCCc
Q 039067 25 LEALEISEINVNK-IWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE-NRADQ 102 (304)
Q Consensus 25 L~~L~L~~~~l~~-~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~-~~~~~ 102 (304)
++.|+|.++++.. ++..... +++|+.|+++++ .+....|.. ...+++|+.|++++|.--..++.. ...++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~------L~~L~~L~Ls~N-~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISK------LRHLQSINLSGN-SIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEECCCCCccccCCHHHhC------CCCCCEEECCCC-cccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 5666666665542 2221111 677777777775 444222322 356777777777777522233322 12367
Q ss_pred cceeecccCccce-ecCCCcccCCCCccceeeeccccccc
Q 039067 103 LTTLGLQYLPKLR-CLYPGMHTSEWPALESLLVRHCDKLK 141 (304)
Q Consensus 103 L~~L~L~~c~~L~-~~~~~~~~~~l~~L~~L~l~~C~~L~ 141 (304)
|+.|+++++. +. .+|... ...+.++..+.+.+++.+.
T Consensus 492 L~~L~Ls~N~-l~g~iP~~l-~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 492 LRILNLNGNS-LSGRVPAAL-GGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCEEECcCCc-ccccCChHH-hhccccCceEEecCCcccc
Confidence 7777777663 33 233221 1112345566666655444
No 48
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.93 E-value=0.0055 Score=57.74 Aligned_cols=110 Identities=21% Similarity=0.250 Sum_probs=76.2
Q ss_pred cceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCCccc
Q 039067 25 LEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRADQLT 104 (304)
Q Consensus 25 L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~ 104 (304)
|++|.+++++++.++..... .+.|..|+.++| .+..+++ ..+.+.+|+.|.++.+. +..++.+...-.|.
T Consensus 145 Lkvli~sNNkl~~lp~~ig~------~~tl~~ld~s~n-ei~slps--ql~~l~slr~l~vrRn~-l~~lp~El~~LpLi 214 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPEEIGL------LPTLAHLDVSKN-EIQSLPS--QLGYLTSLRDLNVRRNH-LEDLPEELCSLPLI 214 (722)
T ss_pred ceeEEEecCccccCCccccc------chhHHHhhhhhh-hhhhchH--HhhhHHHHHHHHHhhhh-hhhCCHHHhCCcee
Confidence 67777777777666555432 677778888765 5666633 24567777888887775 55555444445778
Q ss_pred eeecccCccceecCCCcccCCCCccceeeecccccccccccCCC
Q 039067 105 TLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLS 148 (304)
Q Consensus 105 ~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~ 148 (304)
.|+++ |.++..+|... ..+..|+.|-+.+.| |++-|.+.+
T Consensus 215 ~lDfS-cNkis~iPv~f--r~m~~Lq~l~LenNP-LqSPPAqIC 254 (722)
T KOG0532|consen 215 RLDFS-CNKISYLPVDF--RKMRHLQVLQLENNP-LQSPPAQIC 254 (722)
T ss_pred eeecc-cCceeecchhh--hhhhhheeeeeccCC-CCCChHHHH
Confidence 88886 45888888642 467889999998886 888877544
No 49
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=0.0076 Score=49.56 Aligned_cols=43 Identities=21% Similarity=0.144 Sum_probs=20.1
Q ss_pred cccccceeecccccCcccccCCCCcCCCCCCcccEEEEecCCCce
Q 039067 252 KLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCARNA 296 (304)
Q Consensus 252 ~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~~L~ 296 (304)
++++++.|.+.+|..+...+.+.+.. ..++||.|+|++||+++
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~--~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGG--LAPSLQDLDLSGCPRIT 165 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcc--cccchheeeccCCCeec
Confidence 44445555555554444444433221 34555555555555544
No 50
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.47 E-value=0.019 Score=51.91 Aligned_cols=67 Identities=25% Similarity=0.379 Sum_probs=51.0
Q ss_pred ccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccch
Q 039067 20 VALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEI 94 (304)
Q Consensus 20 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l 94 (304)
..+++|++|+|++++++.|-.+-+.+ ...++.|.+... ++..+ ...+++.+..|+.|+++++. |+.+
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~-----~a~l~eL~L~~N-~l~~v-~~~~f~~ls~L~tL~L~~N~-it~~ 337 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEG-----AAELQELYLTRN-KLEFV-SSGMFQGLSGLKTLSLYDNQ-ITTV 337 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcc-----hhhhhhhhcCcc-hHHHH-HHHhhhccccceeeeecCCe-eEEE
Confidence 35899999999999877765554444 688899998874 67776 55677888899999998885 5544
No 51
>PLN03150 hypothetical protein; Provisional
Probab=94.45 E-value=0.053 Score=53.31 Aligned_cols=90 Identities=12% Similarity=0.050 Sum_probs=59.4
Q ss_pred cccCCccceeeecceeee-eecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc
Q 039067 19 KVALPNLEALEISEINVN-KIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE 97 (304)
Q Consensus 19 ~~~~~~L~~L~L~~~~l~-~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~ 97 (304)
...+++|+.|+|+++++. .++..... +++|+.|+++++ ++....|. ..+.+++|++|++++|.--..++..
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~------l~~L~~LdLs~N-~lsg~iP~-~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLGS------ITSLEVLDLSYN-SFNGSIPE-SLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhC------CCCCCEEECCCC-CCCCCCch-HHhcCCCCCEEECcCCcccccCChH
Confidence 345899999999999776 33322211 899999999997 56544343 3578999999999998633344432
Q ss_pred cCC--CccceeecccCcccee
Q 039067 98 NRA--DQLTTLGLQYLPKLRC 116 (304)
Q Consensus 98 ~~~--~~L~~L~L~~c~~L~~ 116 (304)
... .++..+.+.+++.+..
T Consensus 510 l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 510 LGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred HhhccccCceEEecCCccccC
Confidence 211 3456677766654443
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.27 E-value=0.0084 Score=58.18 Aligned_cols=57 Identities=21% Similarity=0.206 Sum_probs=38.4
Q ss_pred CCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc-cCCCccceeecccC
Q 039067 50 RFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE-NRADQLTTLGLQYL 111 (304)
Q Consensus 50 ~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~-~~~~~L~~L~L~~c 111 (304)
-++.|+.|++++. ++++. .....+++|++|||+++. +..++.. ..+.+|+.|.+++.
T Consensus 185 ll~ale~LnLshN-k~~~v---~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 185 LLPALESLNLSHN-KFTKV---DNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred HHHHhhhhccchh-hhhhh---HHHHhcccccccccccch-hccccccchhhhhheeeeeccc
Confidence 3567888888874 56655 345678899999998875 6555432 22266888877764
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.98 E-value=0.11 Score=42.98 Aligned_cols=106 Identities=18% Similarity=0.219 Sum_probs=62.6
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhc---cc
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIIS---EN 98 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~---~~ 98 (304)
..+...++|+++++.++..- + .++.|.+|.+.+ .+++++.+ .....+|+|..|.+.++. ++++.. -.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~l-p------~l~rL~tLll~n-NrIt~I~p-~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa 110 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNL-P------HLPRLHTLLLNN-NRITRIDP-DLDTFLPNLKTLILTNNS-IQELGDLDPLA 110 (233)
T ss_pred ccccceecccccchhhcccC-C------CccccceEEecC-Ccceeecc-chhhhccccceEEecCcc-hhhhhhcchhc
Confidence 45667777777766554221 1 178888888876 47777743 344567888888888874 554432 22
Q ss_pred CCCccceeecccCccceec-CCCcccCCCCccceeeeccc
Q 039067 99 RADQLTTLGLQYLPKLRCL-YPGMHTSEWPALESLLVRHC 137 (304)
Q Consensus 99 ~~~~L~~L~L~~c~~L~~~-~~~~~~~~l~~L~~L~l~~C 137 (304)
..|+|++|.+-+.+--..- +..-.+..+|+|+.|+..+-
T Consensus 111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 3377777777654311100 11112234677777777654
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.96 E-value=0.02 Score=48.80 Aligned_cols=83 Identities=23% Similarity=0.233 Sum_probs=50.3
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCcccEEeeccC--ccccchh-cccCCCccceeecccCccceecCCCcccCCCC
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHC--EDLQEII-SENRADQLTTLGLQYLPKLRCLYPGMHTSEWP 127 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c--~~l~~l~-~~~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~ 127 (304)
|.+|+.|++.++ .++.+ .....+|+|++|.++++ +-...+. .....|+|++|.+++. +++.+........+.
T Consensus 42 ~~~le~ls~~n~-gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 42 FVELELLSVINV-GLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELE 116 (260)
T ss_pred ccchhhhhhhcc-ceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhc
Confidence 788888888777 45444 22345788889988887 3222221 1122388888888776 444332222223467
Q ss_pred ccceeeecccc
Q 039067 128 ALESLLVRHCD 138 (304)
Q Consensus 128 ~L~~L~l~~C~ 138 (304)
+|.+|.+.+|+
T Consensus 117 nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 117 NLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCC
Confidence 77788888775
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.26 E-value=0.069 Score=49.24 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=56.3
Q ss_pred ccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc-CCCc
Q 039067 24 NLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN-RADQ 102 (304)
Q Consensus 24 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~-~~~~ 102 (304)
+|+.|++++++++.+...... +++|+.|.++++ .+.++++. ....+.|+.|+++++. +..++... ....
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~------l~~L~~L~l~~N-~l~~l~~~--~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~ 210 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRN------LPNLKNLDLSFN-DLSDLPKL--LSNLSNLNNLDLSGNK-ISDLPPEIELLSA 210 (394)
T ss_pred hcccccccccchhhhhhhhhc------cccccccccCCc-hhhhhhhh--hhhhhhhhheeccCCc-cccCchhhhhhhh
Confidence 899999999988776321111 799999999987 67777433 1267899999999885 77666543 2244
Q ss_pred cceeecccCc
Q 039067 103 LTTLGLQYLP 112 (304)
Q Consensus 103 L~~L~L~~c~ 112 (304)
|++|.+.+.+
T Consensus 211 L~~l~~~~N~ 220 (394)
T COG4886 211 LEELDLSNNS 220 (394)
T ss_pred hhhhhhcCCc
Confidence 8888887764
No 56
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=92.65 E-value=0.0058 Score=57.59 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=27.6
Q ss_pred cCCcccEEeeccCccccchhcccCCCccceeecccCccceecCCCcccCCCCccceeeecccccccccc
Q 039067 76 SLKQLQHLDIRHCEDLQEIISENRADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFA 144 (304)
Q Consensus 76 ~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 144 (304)
.+..|.+|+++.+. +..++.....--|+.|.+++. +++.++... ...+.|..|+++.| ++.++|
T Consensus 119 ~L~~lt~l~ls~Nq-lS~lp~~lC~lpLkvli~sNN-kl~~lp~~i--g~~~tl~~ld~s~n-ei~slp 182 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQ-LSHLPDGLCDLPLKVLIVSNN-KLTSLPEEI--GLLPTLAHLDVSKN-EIQSLP 182 (722)
T ss_pred hhhHHHHhhhccch-hhcCChhhhcCcceeEEEecC-ccccCCccc--ccchhHHHhhhhhh-hhhhch
Confidence 44445555554443 333333322234445554443 444444432 13444555555444 244443
No 57
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.32 E-value=0.071 Score=25.45 Aligned_cols=15 Identities=13% Similarity=0.022 Sum_probs=6.9
Q ss_pred cccEEEEecCCCceec
Q 039067 283 YLEILEVYYCARNAES 298 (304)
Q Consensus 283 ~L~~L~i~~C~~L~~l 298 (304)
+|+.|++++|. |+++
T Consensus 2 ~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSL 16 (17)
T ss_dssp T-SEEEETSS---SSE
T ss_pred ccCEEECCCCC-CCCC
Confidence 45666666665 5544
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=92.20 E-value=0.0063 Score=59.03 Aligned_cols=105 Identities=26% Similarity=0.229 Sum_probs=66.4
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRAD 101 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~ 101 (304)
++.|+.|+|+++++.+.. +.. ++++|++|+|++. ++..++..++.+ .+|+.|.++++. ++++.+.+...
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr-----~l~~LkhLDlsyN-~L~~vp~l~~~g--c~L~~L~lrnN~-l~tL~gie~Lk 254 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLR-----RLPKLKHLDLSYN-CLRHVPQLSMVG--CKLQLLNLRNNA-LTTLRGIENLK 254 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHH-----hcccccccccccc-hhccccccchhh--hhheeeeecccH-HHhhhhHHhhh
Confidence 688899999999776643 111 1899999999884 777776555433 349999998885 77666655556
Q ss_pred ccceeecccCccceecCCCcccCCCCccceeeecccc
Q 039067 102 QLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCD 138 (304)
Q Consensus 102 ~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~ 138 (304)
+|+-|++++. -|.+...-.....+..|+.|.+.|.|
T Consensus 255 sL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 255 SLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 7777777553 11111111111134566777776665
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.74 E-value=0.18 Score=25.75 Aligned_cols=15 Identities=33% Similarity=0.197 Sum_probs=8.7
Q ss_pred CccEEeeccCcccccc
Q 039067 53 NLTRLIVWRCHKLKYI 68 (304)
Q Consensus 53 ~L~~L~l~~C~~l~~l 68 (304)
+|++|++++| +++.+
T Consensus 1 ~L~~Ldls~n-~l~~i 15 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSI 15 (22)
T ss_dssp TESEEEETSS-EESEE
T ss_pred CccEEECCCC-cCEeC
Confidence 3566666666 55555
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.12 E-value=0.33 Score=40.23 Aligned_cols=82 Identities=17% Similarity=0.114 Sum_probs=54.1
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--CCCccceeecccCccceecCCCcccCCCCc
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--RADQLTTLGLQYLPKLRCLYPGMHTSEWPA 128 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~ 128 (304)
..+...+++.+. .+..+ .....+++|..|.+.+++ |+.+...- ..|+|++|.+.+. ++..+........+|.
T Consensus 41 ~d~~d~iDLtdN-dl~~l---~~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 41 LDQFDAIDLTDN-DLRKL---DNLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPK 114 (233)
T ss_pred ccccceeccccc-chhhc---ccCCCccccceEEecCCc-ceeeccchhhhccccceEEecCc-chhhhhhcchhccCCc
Confidence 566778888875 45555 223567899999998886 66664332 2388999999875 4554444333346777
Q ss_pred cceeeecccc
Q 039067 129 LESLLVRHCD 138 (304)
Q Consensus 129 L~~L~l~~C~ 138 (304)
|+.|.+-+.|
T Consensus 115 L~~Ltll~Np 124 (233)
T KOG1644|consen 115 LEYLTLLGNP 124 (233)
T ss_pred cceeeecCCc
Confidence 8877776654
No 61
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.45 E-value=0.15 Score=47.57 Aligned_cols=81 Identities=25% Similarity=0.307 Sum_probs=35.4
Q ss_pred ccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccC
Q 039067 20 VALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENR 99 (304)
Q Consensus 20 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~ 99 (304)
..+++|+.|++.+++++.+... .. ++++|+.|++++. .+.++.+ ...++.|+.|+++++. +..+.....
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~--l~----~~~~L~~L~ls~N-~I~~i~~---l~~l~~L~~L~l~~N~-i~~~~~~~~ 160 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENL--LS----SLVNLQVLDLSFN-KITKLEG---LSTLTLLKELNLSGNL-ISDISGLES 160 (414)
T ss_pred ccccceeeeeccccchhhcccc--hh----hhhcchheecccc-ccccccc---hhhccchhhheeccCc-chhccCCcc
Confidence 3455555555555544443321 00 1455555555552 4444422 2334445555555553 333322222
Q ss_pred CCccceeecccC
Q 039067 100 ADQLTTLGLQYL 111 (304)
Q Consensus 100 ~~~L~~L~L~~c 111 (304)
.+.|+.+++.++
T Consensus 161 l~~L~~l~l~~n 172 (414)
T KOG0531|consen 161 LKSLKLLDLSYN 172 (414)
T ss_pred chhhhcccCCcc
Confidence 244444444443
No 62
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=90.32 E-value=0.11 Score=27.66 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=12.2
Q ss_pred CCcccEEEEecCCCcee
Q 039067 281 FQYLEILEVYYCARNAE 297 (304)
Q Consensus 281 ~~~L~~L~i~~C~~L~~ 297 (304)
+++|++|++++|+++++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46677777777777764
No 63
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=89.66 E-value=0.072 Score=47.44 Aligned_cols=91 Identities=20% Similarity=0.143 Sum_probs=47.4
Q ss_pred cccccccCCccceeeecce--eeee-ecccCCCCCccCCCCCccEEeeccCc--ccc-cccc-----hhhhhcCCcccEE
Q 039067 15 LFNEKVALPNLEALEISEI--NVNK-IWHYNHLPVMFPRFQNLTRLIVWRCH--KLK-YIFS-----ASMIGSLKQLQHL 83 (304)
Q Consensus 15 ~~~~~~~~~~L~~L~L~~~--~l~~-~~~~~~~~~~~~~~~~L~~L~l~~C~--~l~-~l~~-----~~~~~~l~~L~~L 83 (304)
..+....+..+++++|+++ +... -|-+....+ -++|+..++++.- +++ .+++ ......+|+|++|
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~----~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~l 97 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLAS----KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKL 97 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhh----cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEe
Confidence 4555666888999999998 3221 111111111 3566666665421 111 1111 0123456788888
Q ss_pred eeccCcccc-------chhcccCCCccceeecccC
Q 039067 84 DIRHCEDLQ-------EIISENRADQLTTLGLQYL 111 (304)
Q Consensus 84 ~i~~c~~l~-------~l~~~~~~~~L~~L~L~~c 111 (304)
++|++.--. ++.+. ...|+.|.|.+|
T Consensus 98 dLSDNA~G~~g~~~l~~ll~s--~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 98 DLSDNAFGPKGIRGLEELLSS--CTDLEELYLNNC 130 (382)
T ss_pred eccccccCccchHHHHHHHHh--ccCHHHHhhhcC
Confidence 888875211 11111 266777777776
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=89.42 E-value=0.13 Score=45.94 Aligned_cols=110 Identities=20% Similarity=0.193 Sum_probs=59.6
Q ss_pred CCccceeeecceeeeeecccC---CCCCccCCCCCccEEeeccCcccccccch---hhhhcCCcccEEeeccCcccc---
Q 039067 22 LPNLEALEISEINVNKIWHYN---HLPVMFPRFQNLTRLIVWRCHKLKYIFSA---SMIGSLKQLQHLDIRHCEDLQ--- 92 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~---~~~~~~~~~~~L~~L~l~~C~~l~~l~~~---~~~~~l~~L~~L~i~~c~~l~--- 92 (304)
.+.|+++.+..+.+..-.... .... +++|+.|++.+.. ++.-... .....+++|++|.+++|- ++
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~----~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcl-l~~~G 257 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEH----CPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCL-LENEG 257 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHh----CCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccc-ccccc
Confidence 467888888877443211100 1111 7888888887742 2221111 123457788888888884 32
Q ss_pred --chhc--ccCCCccceeecccCccceecCC---CcccCCCCccceeeecccc
Q 039067 93 --EIIS--ENRADQLTTLGLQYLPKLRCLYP---GMHTSEWPALESLLVRHCD 138 (304)
Q Consensus 93 --~l~~--~~~~~~L~~L~L~~c~~L~~~~~---~~~~~~l~~L~~L~l~~C~ 138 (304)
.+.. ....|+|++|.+.++. .+.-.. .......|.|+.|++++|.
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 1111 0113888888887762 221100 0011236888888888884
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.92 E-value=0.036 Score=48.01 Aligned_cols=80 Identities=21% Similarity=0.187 Sum_probs=50.5
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCc--cccchhcccC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCE--DLQEIISENR 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~--~l~~l~~~~~ 99 (304)
+.+.++|+.+||++.+|--.. . ++.|++|.|+- ++++++.| +..+.+|++|-++.+. ++.++.--.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~-k------Mp~lEVLsLSv-NkIssL~p---l~rCtrLkElYLRkN~I~sldEL~YLkn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICE-K------MPLLEVLSLSV-NKISSLAP---LQRCTRLKELYLRKNCIESLDELEYLKN 86 (388)
T ss_pred HHHhhhhcccCCCccHHHHHH-h------cccceeEEeec-cccccchh---HHHHHHHHHHHHHhcccccHHHHHHHhc
Confidence 556788888888777653221 1 78889998876 47777743 3567888888777653 1222222223
Q ss_pred CCccceeecccCc
Q 039067 100 ADQLTTLGLQYLP 112 (304)
Q Consensus 100 ~~~L~~L~L~~c~ 112 (304)
.|+|++|+|...+
T Consensus 87 lpsLr~LWL~ENP 99 (388)
T KOG2123|consen 87 LPSLRTLWLDENP 99 (388)
T ss_pred CchhhhHhhccCC
Confidence 3777777776544
No 66
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=88.56 E-value=0.13 Score=47.99 Aligned_cols=81 Identities=25% Similarity=0.199 Sum_probs=58.3
Q ss_pred cccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhc--
Q 039067 19 KVALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIIS-- 96 (304)
Q Consensus 19 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~-- 96 (304)
...+++|++|+|+++.+++++.-.. +..|+.|+++++ .+..+ .....+++|+.++++++. +..+..
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~l~~-------l~~L~~L~l~~N-~i~~~---~~~~~l~~L~~l~l~~n~-i~~ie~~~ 181 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEGLST-------LTLLKELNLSGN-LISDI---SGLESLKSLKLLDLSYNR-IVDIENDE 181 (414)
T ss_pred hhhhhcchheeccccccccccchhh-------ccchhhheeccC-cchhc---cCCccchhhhcccCCcch-hhhhhhhh
Confidence 4569999999999999888876432 677999999986 66666 333458899999999986 554544
Q ss_pred ccCCCccceeecccC
Q 039067 97 ENRADQLTTLGLQYL 111 (304)
Q Consensus 97 ~~~~~~L~~L~L~~c 111 (304)
.....+++.+.+.+.
T Consensus 182 ~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 182 LSELISLEELDLGGN 196 (414)
T ss_pred hhhccchHHHhccCC
Confidence 133356666666554
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.85 E-value=1.8 Score=32.56 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=47.6
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccC--
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENR-- 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~-- 99 (304)
.++|+.+.+.+ .++.+....+.. +.+|+.+.+.+ .++.+. ......++.|+++.+.+ .+..+.....
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~-----~~~l~~i~~~~--~~~~i~-~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~ 79 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSN-----CTSLKSINFPN--NLTSIG-DNAFSNCKSLESITFPN--NLKSIGDNAFSN 79 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT------TT-SEEEESS--TTSCE--TTTTTT-TT-EEEEETS--TT-EE-TTTTTT
T ss_pred CCCCCEEEECC-CeeEeChhhccc-----ccccccccccc--cccccc-eeeeecccccccccccc--cccccccccccc
Confidence 55778877765 455565554443 67888888876 466663 33445677888888865 3443333222
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeecc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRH 136 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~ 136 (304)
.++|+.+.+.. ++..+...... .. .|+.+.+.+
T Consensus 80 ~~~l~~i~~~~--~~~~i~~~~f~-~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPS--NITEIGSSSFS-NC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETT--T-BEEHTTTTT-T--T--EEE-TT
T ss_pred cccccccccCc--cccEEchhhhc-CC-CceEEEECC
Confidence 26777777743 35555444322 23 666666553
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.33 E-value=0.42 Score=40.96 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=61.9
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccC--cccccccchhhhhcCCcccEEeeccCcccc---chhc
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRC--HKLKYIFSASMIGSLKQLQHLDIRHCEDLQ---EIIS 96 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C--~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~---~l~~ 96 (304)
+.+|+-|++.++.++.+-.- +. +++||.|.++.. .-.-.+.. .+..+|+|++|.++++. +. .+..
T Consensus 42 ~~~le~ls~~n~gltt~~~~-P~------Lp~LkkL~lsdn~~~~~~~l~v--l~e~~P~l~~l~ls~Nk-i~~lstl~p 111 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNF-PK------LPKLKKLELSDNYRRVSGGLEV--LAEKAPNLKVLNLSGNK-IKDLSTLRP 111 (260)
T ss_pred ccchhhhhhhccceeecccC-CC------cchhhhhcccCCccccccccee--hhhhCCceeEEeecCCc-cccccccch
Confidence 66677777777766544211 22 899999999865 21222211 23456999999999885 33 2222
Q ss_pred ccCCCccceeecccCccceecCC--CcccCCCCccceeeecccc
Q 039067 97 ENRADQLTTLGLQYLPKLRCLYP--GMHTSEWPALESLLVRHCD 138 (304)
Q Consensus 97 ~~~~~~L~~L~L~~c~~L~~~~~--~~~~~~l~~L~~L~l~~C~ 138 (304)
....++|.+|++.+|+... +-. ......+++|+.|+-..+.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence 2222678888888886444 211 0112236777777665554
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.08 E-value=0.076 Score=46.09 Aligned_cols=55 Identities=24% Similarity=0.437 Sum_probs=36.3
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCCccceeeccc
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRADQLTTLGLQY 110 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~L~~ 110 (304)
+.+.+.|+..+| .+.++ ++...+|.|++|.++-+. |..+..-....+|++|.|..
T Consensus 18 l~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRk 72 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRK 72 (388)
T ss_pred HHHhhhhcccCC-CccHH---HHHHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHh
Confidence 678899999999 67777 566789999999987653 44332222224555554433
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=72.50 E-value=10 Score=28.23 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=38.0
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccC-C
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENR-A 100 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~-~ 100 (304)
+++|+.+.+.+. +..+....... +++|+.+.+.+ .+..+. ......+++|+++++.. ++..+..... .
T Consensus 34 ~~~l~~i~~~~~-~~~i~~~~F~~-----~~~l~~i~~~~--~~~~i~-~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~ 102 (129)
T PF13306_consen 34 CTSLKSINFPNN-LTSIGDNAFSN-----CKSLESITFPN--NLKSIG-DNAFSNCTNLKNIDIPS--NITEIGSSSFSN 102 (129)
T ss_dssp -TT-SEEEESST-TSCE-TTTTTT------TT-EEEEETS--TT-EE--TTTTTT-TTECEEEETT--T-BEEHTTTTTT
T ss_pred cccccccccccc-ccccceeeeec-----ccccccccccc--cccccc-cccccccccccccccCc--cccEEchhhhcC
Confidence 557888888764 55555443333 67899999965 555563 33445688999999864 2444433221 1
Q ss_pred Cccceeec
Q 039067 101 DQLTTLGL 108 (304)
Q Consensus 101 ~~L~~L~L 108 (304)
.+|+.+.+
T Consensus 103 ~~l~~i~~ 110 (129)
T PF13306_consen 103 CNLKEINI 110 (129)
T ss_dssp -T--EEE-
T ss_pred CCceEEEE
Confidence 34555444
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=70.91 E-value=0.6 Score=36.41 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=24.7
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchh
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEII 95 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~ 95 (304)
-..|+..++++. .++++ |..+...+|-++.|+++++. +.+++
T Consensus 52 ~~el~~i~ls~N-~fk~f-p~kft~kf~t~t~lNl~~ne-isdvP 93 (177)
T KOG4579|consen 52 GYELTKISLSDN-GFKKF-PKKFTIKFPTATTLNLANNE-ISDVP 93 (177)
T ss_pred CceEEEEecccc-hhhhC-CHHHhhccchhhhhhcchhh-hhhch
Confidence 356666677663 56666 34455566666666666653 44444
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=70.72 E-value=2.1 Score=22.48 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=8.3
Q ss_pred CCccEEeeccCcccccc
Q 039067 52 QNLTRLIVWRCHKLKYI 68 (304)
Q Consensus 52 ~~L~~L~l~~C~~l~~l 68 (304)
.+|++|++.++ .++.+
T Consensus 2 ~~L~~L~L~~N-~l~~l 17 (26)
T smart00370 2 PNLRELDLSNN-QLSSL 17 (26)
T ss_pred CCCCEEECCCC-cCCcC
Confidence 44555555554 45555
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=70.72 E-value=2.1 Score=22.48 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=8.3
Q ss_pred CCccEEeeccCcccccc
Q 039067 52 QNLTRLIVWRCHKLKYI 68 (304)
Q Consensus 52 ~~L~~L~l~~C~~l~~l 68 (304)
.+|++|++.++ .++.+
T Consensus 2 ~~L~~L~L~~N-~l~~l 17 (26)
T smart00369 2 PNLRELDLSNN-QLSSL 17 (26)
T ss_pred CCCCEEECCCC-cCCcC
Confidence 44555555554 45555
No 74
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.47 E-value=1.5 Score=38.63 Aligned_cols=67 Identities=15% Similarity=0.069 Sum_probs=36.1
Q ss_pred hcCCcccEEeeccCccccchhccc---CCCccceeecccCccceecCCCcccCCCCccceeeeccccccccc
Q 039067 75 GSLKQLQHLDIRHCEDLQEIISEN---RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIF 143 (304)
Q Consensus 75 ~~l~~L~~L~i~~c~~l~~l~~~~---~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l 143 (304)
..||++..+-+..|+ ++..-... ..|.+-.|.|..- ++-+|........++.|..|.+.+-|-...+
T Consensus 196 r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhcccchheeeecCc-ccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 446777777776665 33222211 1255555555432 4555544333346788888887776644433
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=60.09 E-value=6.3 Score=20.13 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=7.0
Q ss_pred CcccEEeeccCc
Q 039067 78 KQLQHLDIRHCE 89 (304)
Q Consensus 78 ~~L~~L~i~~c~ 89 (304)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 567777777775
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=59.56 E-value=6.1 Score=21.09 Aligned_cols=16 Identities=44% Similarity=0.708 Sum_probs=9.9
Q ss_pred Cccceeeecceeeeee
Q 039067 23 PNLEALEISEINVNKI 38 (304)
Q Consensus 23 ~~L~~L~L~~~~l~~~ 38 (304)
++|++|.+++++++.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5667777776655443
No 77
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=56.49 E-value=4.1 Score=20.30 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=13.8
Q ss_pred ccceeeecceeeeeeccc
Q 039067 24 NLEALEISEINVNKIWHY 41 (304)
Q Consensus 24 ~L~~L~L~~~~l~~~~~~ 41 (304)
+|.+|++.+.+++++|.+
T Consensus 1 ~LVeL~m~~S~lekLW~G 18 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEG 18 (20)
T ss_pred CcEEEECCCCChHHhcCc
Confidence 467788887788888875
No 78
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=42.67 E-value=5.2 Score=31.38 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=45.9
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCcc
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCED 90 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~ 90 (304)
.-..|.+.+|+++.+++++.....- |+-+++|++.+. .+.++ |.. ...+|.|+.|+++.++-
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~k-----f~t~t~lNl~~n-eisdv-PeE-~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIK-----FPTATTLNLANN-EISDV-PEE-LAAMPALRSLNLRFNPL 112 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhc-----cchhhhhhcchh-hhhhc-hHH-HhhhHHhhhcccccCcc
Confidence 3566777888888777765554222 788899999885 78888 444 45789999999999873
No 79
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=36.31 E-value=4.5 Score=35.34 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=9.8
Q ss_pred cccccEEEeccccc
Q 039067 192 VSNFKELSLSGKDV 205 (304)
Q Consensus 192 ~~~L~~L~l~~c~~ 205 (304)
.|+|..|...|+.+
T Consensus 271 ~p~l~~L~~~Yne~ 284 (388)
T COG5238 271 VPNLMPLPGDYNER 284 (388)
T ss_pred CCCccccccchhhh
Confidence 57777777777664
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.61 E-value=20 Score=34.40 Aligned_cols=64 Identities=20% Similarity=0.158 Sum_probs=35.2
Q ss_pred CCCccEEeeccCcccccccch-hhhhcCCcccEEeeccCcccc----chhcccCCCccceeecccCcccee
Q 039067 51 FQNLTRLIVWRCHKLKYIFSA-SMIGSLKQLQHLDIRHCEDLQ----EIISENRADQLTTLGLQYLPKLRC 116 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~-~~~~~l~~L~~L~i~~c~~l~----~l~~~~~~~~L~~L~L~~c~~L~~ 116 (304)
++.+..+.+++. ++.++... ...+..|+|+.|+++++.+.. ++.+.. ...|++|.+.+.+--+.
T Consensus 217 ~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLCTT 285 (585)
T ss_pred Ccceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCccccc
Confidence 677777777664 45444222 234566777777777763221 222212 26677777777654333
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=25.56 E-value=33 Score=18.32 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=6.1
Q ss_pred ccEEeeccCcccccc
Q 039067 54 LTRLIVWRCHKLKYI 68 (304)
Q Consensus 54 L~~L~l~~C~~l~~l 68 (304)
|+.|.+++. +++++
T Consensus 4 L~~L~vs~N-~Lt~L 17 (26)
T smart00364 4 LKELNVSNN-QLTSL 17 (26)
T ss_pred cceeecCCC-ccccC
Confidence 444444442 34444
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=24.93 E-value=48 Score=17.65 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=7.9
Q ss_pred CcccEEeeccCc
Q 039067 78 KQLQHLDIRHCE 89 (304)
Q Consensus 78 ~~L~~L~i~~c~ 89 (304)
++|++|+++++.
T Consensus 2 ~~L~~LdL~~N~ 13 (28)
T smart00368 2 PSLRELDLSNNK 13 (28)
T ss_pred CccCEEECCCCC
Confidence 456777777664
Done!