Query 039067
Match_columns 304
No_of_seqs 126 out of 1262
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 09:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.6 2.6E-15 9E-20 133.8 13.9 113 22-145 80-200 (328)
2 3zyi_A Leucine-rich repeat-con 99.6 1.8E-14 6.3E-19 133.8 17.0 222 22-293 74-301 (452)
3 3zyj_A Leucine-rich repeat-con 99.6 1.8E-14 6.3E-19 133.3 16.7 222 22-293 63-290 (440)
4 3o6n_A APL1; leucine-rich repe 99.6 6.4E-14 2.2E-18 127.5 18.5 113 20-143 42-156 (390)
5 4fcg_A Uncharacterized protein 99.6 1.6E-14 5.6E-19 128.7 14.3 200 19-291 100-310 (328)
6 3zyi_A Leucine-rich repeat-con 99.6 9.7E-14 3.3E-18 128.9 17.4 220 26-299 57-282 (452)
7 3zyj_A Leucine-rich repeat-con 99.5 1.5E-13 5.2E-18 127.2 17.5 221 25-299 45-271 (440)
8 1ozn_A Reticulon 4 receptor; N 99.5 1.5E-13 5.3E-18 119.6 15.1 203 22-293 31-236 (285)
9 3oja_B Anopheles plasmodium-re 99.5 3.2E-13 1.1E-17 129.8 18.2 37 252-293 299-335 (597)
10 4fmz_A Internalin; leucine ric 99.5 6.2E-13 2.1E-17 118.9 17.1 248 21-298 64-326 (347)
11 4fmz_A Internalin; leucine ric 99.5 5.2E-13 1.8E-17 119.3 15.9 229 21-298 42-280 (347)
12 2xwt_C Thyrotropin receptor; s 99.5 3.1E-13 1.1E-17 114.7 13.0 201 22-295 30-239 (239)
13 2ft3_A Biglycan; proteoglycan, 99.5 1.5E-12 5E-17 116.0 17.9 243 22-294 53-306 (332)
14 2z66_A Variable lymphocyte rec 99.5 1.4E-12 4.9E-17 114.6 16.6 225 22-293 27-259 (306)
15 2id5_A Lingo-1, leucine rich r 99.5 1.3E-12 4.3E-17 122.0 16.8 106 22-137 31-138 (477)
16 1xku_A Decorin; proteoglycan, 99.5 1.1E-12 3.7E-17 116.6 15.5 105 22-137 51-155 (330)
17 1h6u_A Internalin H; cell adhe 99.5 8E-13 2.7E-17 116.7 14.1 189 21-293 39-228 (308)
18 2z80_A TOLL-like receptor 2, v 99.5 7.1E-13 2.4E-17 119.0 13.9 237 22-293 51-312 (353)
19 2id5_A Lingo-1, leucine rich r 99.5 1.1E-12 3.7E-17 122.5 15.5 225 21-293 102-331 (477)
20 1xku_A Decorin; proteoglycan, 99.4 2.1E-12 7.3E-17 114.7 15.3 230 24-299 32-279 (330)
21 3o6n_A APL1; leucine-rich repe 99.4 1.6E-12 5.3E-17 118.3 14.3 122 21-153 67-190 (390)
22 3o53_A Protein LRIM1, AGAP0063 99.4 7.7E-13 2.6E-17 117.1 11.6 213 22-294 33-249 (317)
23 3bz5_A Internalin-J, INLJ; leu 99.4 2.8E-12 9.7E-17 119.3 15.4 114 19-152 60-173 (457)
24 2o6q_A Variable lymphocyte rec 99.4 5.4E-12 1.8E-16 109.1 16.1 105 23-137 37-143 (270)
25 3oja_A Leucine-rich immune mol 99.4 1.2E-12 4.1E-17 122.8 12.9 214 21-294 32-249 (487)
26 2ast_B S-phase kinase-associat 99.4 1.6E-13 5.5E-18 122.1 6.6 112 23-142 70-183 (336)
27 2z62_A TOLL-like receptor 4, v 99.4 3.7E-12 1.3E-16 110.3 14.9 206 22-297 27-245 (276)
28 3v47_A TOLL-like receptor 5B a 99.4 4.2E-12 1.5E-16 117.5 16.1 109 20-137 51-164 (455)
29 1p9a_G Platelet glycoprotein I 99.4 6.5E-12 2.2E-16 109.9 16.2 200 19-293 6-206 (290)
30 4ay9_X Follicle-stimulating ho 99.4 6.2E-12 2.1E-16 112.9 15.2 116 22-145 29-146 (350)
31 3t6q_A CD180 antigen; protein- 99.4 1.1E-11 3.7E-16 119.0 17.6 107 22-137 277-386 (606)
32 1o6v_A Internalin A; bacterial 99.4 9E-12 3.1E-16 116.0 16.5 81 19-111 64-144 (466)
33 3oja_B Anopheles plasmodium-re 99.4 5E-12 1.7E-16 121.5 14.2 121 21-152 73-195 (597)
34 2ft3_A Biglycan; proteoglycan, 99.4 2.9E-11 1E-15 107.5 18.1 247 19-294 74-332 (332)
35 3bz5_A Internalin-J, INLJ; leu 99.4 1E-11 3.4E-16 115.6 14.6 116 21-156 40-155 (457)
36 3v47_A TOLL-like receptor 5B a 99.4 1E-11 3.5E-16 115.0 14.6 113 22-143 29-144 (455)
37 1o6v_A Internalin A; bacterial 99.3 2.5E-11 8.5E-16 113.0 17.0 38 250-293 349-386 (466)
38 1ozn_A Reticulon 4 receptor; N 99.3 2.1E-11 7.1E-16 106.0 15.0 116 20-145 53-170 (285)
39 3vq2_A TLR4, TOLL-like recepto 99.3 1.9E-11 6.6E-16 117.2 16.3 238 19-293 303-556 (606)
40 3g06_A SSPH2 (leucine-rich rep 99.3 3E-11 1E-15 116.3 16.4 99 22-145 60-158 (622)
41 2z81_A CD282 antigen, TOLL-lik 99.3 2.5E-11 8.5E-16 115.0 15.1 114 22-144 25-140 (549)
42 2o6q_A Variable lymphocyte rec 99.3 4.2E-11 1.4E-15 103.4 15.3 198 23-293 16-216 (270)
43 3g06_A SSPH2 (leucine-rich rep 99.3 3.2E-11 1.1E-15 116.2 15.8 214 21-293 79-295 (622)
44 3t6q_A CD180 antigen; protein- 99.3 4.4E-11 1.5E-15 114.8 16.7 114 19-142 297-414 (606)
45 4eco_A Uncharacterized protein 99.3 2E-11 6.7E-16 118.2 14.1 237 19-293 326-598 (636)
46 4ecn_A Leucine-rich repeat pro 99.3 1.7E-11 5.7E-16 122.2 13.8 237 19-293 569-838 (876)
47 2xwt_C Thyrotropin receptor; s 99.3 2E-11 7E-16 103.4 12.3 179 21-267 53-239 (239)
48 3rgz_A Protein brassinosteroid 99.3 1.4E-11 4.7E-16 121.8 12.6 67 18-89 95-162 (768)
49 4eco_A Uncharacterized protein 99.3 5E-12 1.7E-16 122.4 9.2 258 19-299 202-504 (636)
50 1h6u_A Internalin H; cell adhe 99.3 3.4E-11 1.1E-15 106.2 13.5 110 18-144 58-167 (308)
51 2ast_B S-phase kinase-associat 99.3 1.5E-12 5.2E-17 115.7 4.7 211 19-301 89-311 (336)
52 2z66_A Variable lymphocyte rec 99.3 3E-11 1E-15 106.1 12.5 215 26-293 10-234 (306)
53 3vq2_A TLR4, TOLL-like recepto 99.3 3E-11 1E-15 115.9 13.5 246 19-300 281-538 (606)
54 2z63_A TOLL-like receptor 4, v 99.3 6.9E-11 2.4E-15 112.3 15.5 215 24-293 305-529 (570)
55 3rfs_A Internalin B, repeat mo 99.3 8.9E-11 3E-15 101.5 14.8 108 22-144 40-149 (272)
56 3j0a_A TOLL-like receptor 5; m 99.3 8.2E-11 2.8E-15 117.4 16.6 112 22-144 265-378 (844)
57 2z63_A TOLL-like receptor 4, v 99.3 3.4E-11 1.2E-15 114.5 13.1 226 21-299 280-510 (570)
58 1ziw_A TOLL-like receptor 3; i 99.3 1.4E-10 4.9E-15 112.7 17.5 110 21-137 351-464 (680)
59 2z7x_B TOLL-like receptor 1, v 99.3 6.8E-11 2.3E-15 111.4 14.5 105 23-137 21-125 (520)
60 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 1.1E-10 3.6E-15 111.3 16.0 106 22-137 51-156 (562)
61 4ecn_A Leucine-rich repeat pro 99.3 1.7E-11 5.9E-16 122.1 10.8 258 19-299 444-744 (876)
62 3o53_A Protein LRIM1, AGAP0063 99.2 1.6E-11 5.6E-16 108.5 9.4 197 51-299 33-230 (317)
63 1ogq_A PGIP-2, polygalacturona 99.2 4.1E-11 1.4E-15 105.8 11.9 241 23-298 50-307 (313)
64 3rgz_A Protein brassinosteroid 99.2 9.5E-11 3.2E-15 115.8 15.7 84 21-111 267-353 (768)
65 1ogq_A PGIP-2, polygalacturona 99.2 3.6E-11 1.2E-15 106.2 10.8 219 18-268 71-305 (313)
66 3j0a_A TOLL-like receptor 5; m 99.2 2.1E-10 7.2E-15 114.5 17.6 62 22-89 23-84 (844)
67 3rfs_A Internalin B, repeat mo 99.2 1.7E-10 5.7E-15 99.7 14.0 86 51-144 40-125 (272)
68 1ziw_A TOLL-like receptor 3; i 99.2 1.2E-10 4.3E-15 113.1 14.5 113 22-145 24-138 (680)
69 2z80_A TOLL-like receptor 2, v 99.2 7.6E-11 2.6E-15 105.7 12.0 115 19-143 72-189 (353)
70 2z81_A CD282 antigen, TOLL-lik 99.2 7.1E-11 2.4E-15 111.9 12.0 223 20-293 278-508 (549)
71 2z62_A TOLL-like receptor 4, v 99.2 2.6E-10 8.9E-15 98.6 14.0 115 20-144 49-165 (276)
72 1jl5_A Outer protein YOPM; leu 99.2 4.3E-10 1.5E-14 104.4 16.1 36 253-297 336-371 (454)
73 1h6t_A Internalin B; cell adhe 99.2 1.4E-10 4.8E-15 101.4 11.9 106 21-143 44-149 (291)
74 4glp_A Monocyte differentiatio 99.2 1.5E-10 5.1E-15 102.0 12.2 199 51-293 90-305 (310)
75 1p9a_G Platelet glycoprotein I 99.2 4.8E-10 1.6E-14 97.9 14.7 111 22-145 30-141 (290)
76 4ay9_X Follicle-stimulating ho 99.1 5.4E-10 1.8E-14 100.1 14.3 118 20-145 51-171 (350)
77 1m9s_A Internalin B; cell inva 99.1 2.3E-10 7.7E-15 110.0 12.1 106 21-143 41-146 (605)
78 1h6t_A Internalin B; cell adhe 99.1 4.8E-10 1.7E-14 97.9 12.6 166 51-293 45-211 (291)
79 2z7x_B TOLL-like receptor 1, v 99.1 1.8E-09 6.2E-14 101.6 16.8 195 51-293 275-479 (520)
80 1wwl_A Monocyte differentiatio 99.1 2.7E-10 9.2E-15 100.4 10.4 200 51-293 94-307 (312)
81 3oja_A Leucine-rich immune mol 99.1 4.2E-10 1.4E-14 105.5 12.2 197 51-299 33-230 (487)
82 3m19_A Variable lymphocyte rec 99.1 1.4E-09 4.9E-14 92.7 14.1 150 22-225 34-185 (251)
83 1jl5_A Outer protein YOPM; leu 99.1 1.5E-09 5.3E-14 100.7 15.3 12 253-264 276-287 (454)
84 1m9s_A Internalin B; cell inva 99.1 5.3E-10 1.8E-14 107.4 11.5 106 22-144 20-125 (605)
85 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 6.6E-09 2.3E-13 98.8 17.6 58 21-88 74-131 (562)
86 4ezg_A Putative uncharacterize 99.0 1.1E-09 3.6E-14 90.0 10.3 57 22-89 43-99 (197)
87 2p1m_B Transport inhibitor res 99.0 4.9E-11 1.7E-15 113.9 2.5 33 192-225 288-320 (594)
88 3m19_A Variable lymphocyte rec 99.0 3.2E-09 1.1E-13 90.5 13.0 174 23-265 14-190 (251)
89 1xeu_A Internalin C; cellular 99.0 2.3E-09 7.7E-14 92.3 11.0 106 21-144 39-144 (263)
90 3ogk_B Coronatine-insensitive 99.0 6.7E-11 2.3E-15 113.0 0.7 83 51-134 292-385 (592)
91 1xeu_A Internalin C; cellular 99.0 9E-10 3.1E-14 94.8 7.5 106 21-144 17-122 (263)
92 3cvr_A Invasion plasmid antige 99.0 7.4E-09 2.5E-13 98.6 13.9 98 24-145 60-157 (571)
93 3e6j_A Variable lymphocyte rec 98.9 7.5E-09 2.6E-13 87.0 11.9 112 22-145 39-152 (229)
94 4g8a_A TOLL-like receptor 4; l 98.9 6E-09 2.1E-13 99.8 11.7 110 23-143 52-163 (635)
95 3ogk_B Coronatine-insensitive 98.9 5.2E-10 1.8E-14 106.8 4.0 85 51-137 111-202 (592)
96 2o6s_A Variable lymphocyte rec 98.9 1.4E-08 4.8E-13 83.8 11.9 112 22-144 27-140 (208)
97 4ezg_A Putative uncharacterize 98.9 9.2E-09 3.1E-13 84.3 10.5 113 18-144 61-175 (197)
98 2v9t_B SLIT homolog 2 protein 98.9 1.8E-08 6.1E-13 84.2 12.3 113 22-145 31-145 (220)
99 2ell_A Acidic leucine-rich nuc 98.9 3.4E-09 1.2E-13 84.5 7.2 111 21-144 22-136 (168)
100 2ca6_A RAN GTPase-activating p 98.9 3.8E-10 1.3E-14 102.3 1.5 243 15-293 24-314 (386)
101 4g8a_A TOLL-like receptor 4; l 98.8 5.4E-08 1.8E-12 93.2 15.2 225 22-293 348-578 (635)
102 2p1m_B Transport inhibitor res 98.8 4.1E-10 1.4E-14 107.5 -0.1 116 22-144 288-419 (594)
103 1wwl_A Monocyte differentiatio 98.8 1.4E-08 4.9E-13 89.3 8.8 118 20-143 118-243 (312)
104 2je0_A Acidic leucine-rich nuc 98.8 8.4E-09 2.9E-13 80.5 6.3 110 22-144 16-129 (149)
105 4glp_A Monocyte differentiatio 98.8 1.7E-08 5.8E-13 88.7 8.9 115 20-143 114-239 (310)
106 2xot_A Amphoterin-induced prot 98.7 7.4E-08 2.5E-12 86.5 12.4 113 22-145 38-153 (361)
107 2v70_A SLIT-2, SLIT homolog 2 98.7 8.4E-08 2.9E-12 80.1 11.9 112 22-144 31-145 (220)
108 3cvr_A Invasion plasmid antige 98.7 8.6E-08 2.9E-12 91.3 12.7 99 22-145 79-177 (571)
109 2xot_A Amphoterin-induced prot 98.7 1.1E-07 3.9E-12 85.3 12.1 106 26-144 21-128 (361)
110 1dce_A Protein (RAB geranylger 98.7 1.1E-09 3.9E-14 104.4 -2.4 199 18-288 344-566 (567)
111 1a9n_A U2A', U2A'; complex (nu 98.7 2.8E-08 9.5E-13 79.9 5.9 111 21-144 17-129 (176)
112 2v9t_B SLIT homolog 2 protein 98.6 2E-07 6.9E-12 77.7 10.2 109 20-138 53-163 (220)
113 2v70_A SLIT-2, SLIT homolog 2 98.6 2.3E-07 7.8E-12 77.4 10.3 109 20-138 54-164 (220)
114 3e6j_A Variable lymphocyte rec 98.6 1.6E-07 5.4E-12 78.9 9.3 109 20-138 61-170 (229)
115 2o6s_A Variable lymphocyte rec 98.6 2.2E-07 7.5E-12 76.5 9.4 109 20-138 49-159 (208)
116 2ell_A Acidic leucine-rich nuc 98.6 1.5E-07 5E-12 74.9 7.7 114 20-145 46-164 (168)
117 3goz_A Leucine-rich repeat-con 98.6 4.2E-08 1.5E-12 88.1 4.7 111 22-141 21-151 (362)
118 1w8a_A SLIT protein; signaling 98.5 4.5E-07 1.5E-11 73.9 10.3 105 26-143 11-117 (192)
119 2o6r_A Variable lymphocyte rec 98.5 4E-07 1.4E-11 73.0 9.6 107 22-138 27-135 (177)
120 2ca6_A RAN GTPase-activating p 98.5 3.5E-08 1.2E-12 89.3 3.6 216 19-265 56-314 (386)
121 1z7x_W Ribonuclease inhibitor; 98.5 3.5E-08 1.2E-12 91.1 3.6 41 252-293 282-324 (461)
122 3goz_A Leucine-rich repeat-con 98.5 1.3E-08 4.6E-13 91.4 0.7 119 21-143 48-182 (362)
123 2wfh_A SLIT homolog 2 protein 98.5 4.3E-07 1.5E-11 74.2 9.2 106 22-138 30-137 (193)
124 2wfh_A SLIT homolog 2 protein 98.5 9.5E-07 3.3E-11 72.1 11.2 105 26-145 13-119 (193)
125 2o6r_A Variable lymphocyte rec 98.5 8.1E-07 2.8E-11 71.2 10.6 107 25-145 9-117 (177)
126 3sb4_A Hypothetical leucine ri 98.5 2.4E-06 8.2E-11 75.5 14.3 80 192-290 225-305 (329)
127 3e4g_A ATP synthase subunit S, 98.5 6.8E-08 2.3E-12 77.5 3.1 89 52-143 61-155 (176)
128 1w8a_A SLIT protein; signaling 98.4 1.2E-06 3.9E-11 71.4 9.5 107 22-138 28-137 (192)
129 1z7x_W Ribonuclease inhibitor; 98.4 1.2E-08 3.9E-13 94.4 -3.0 110 21-138 54-181 (461)
130 2je0_A Acidic leucine-rich nuc 98.4 3.6E-07 1.2E-11 71.0 6.1 105 20-135 39-148 (149)
131 3e4g_A ATP synthase subunit S, 98.4 2.2E-07 7.4E-12 74.5 4.6 90 23-118 61-156 (176)
132 1dce_A Protein (RAB geranylger 98.4 1.1E-06 3.8E-11 83.6 9.9 107 24-144 442-549 (567)
133 1a9n_A U2A', U2A'; complex (nu 98.3 1.4E-06 4.8E-11 69.8 6.7 106 22-138 41-151 (176)
134 3g39_A Variable lymphocyte rec 98.2 3.9E-06 1.3E-10 66.9 8.4 101 25-138 11-113 (170)
135 4b8c_D Glucose-repressible alc 98.2 1.8E-06 6.2E-11 84.7 7.3 107 21-141 222-329 (727)
136 2r9u_A Variable lymphocyte rec 98.2 5.9E-06 2E-10 66.1 8.5 102 26-141 15-118 (174)
137 1ds9_A Outer arm dynein; leuci 98.2 1.2E-07 4.2E-12 77.6 -2.0 106 21-138 46-151 (198)
138 4b8c_D Glucose-repressible alc 98.0 9.2E-06 3.1E-10 79.6 8.2 87 51-145 223-310 (727)
139 2r9u_A Variable lymphocyte rec 98.0 1.6E-05 5.6E-10 63.5 7.4 82 22-111 32-115 (174)
140 3g39_A Variable lymphocyte rec 97.9 2E-05 6.8E-10 62.7 7.4 82 22-111 29-112 (170)
141 4fdw_A Leucine rich hypothetic 97.9 0.0003 1E-08 63.9 15.4 191 53-291 158-354 (401)
142 4fdw_A Leucine rich hypothetic 97.9 0.00038 1.3E-08 63.3 15.7 194 51-290 179-378 (401)
143 3sb4_A Hypothetical leucine ri 97.9 0.00012 4E-09 64.6 11.5 112 22-145 100-266 (329)
144 1ds9_A Outer arm dynein; leuci 97.8 1E-06 3.5E-11 72.0 -2.1 84 51-144 47-131 (198)
145 2ra8_A Uncharacterized protein 97.8 2.3E-05 7.9E-10 70.3 5.9 60 74-136 168-228 (362)
146 2ifg_A High affinity nerve gro 97.6 0.00022 7.6E-09 63.0 8.8 85 19-111 27-113 (347)
147 2ifg_A High affinity nerve gro 97.5 0.00018 6.1E-09 63.7 7.7 100 27-138 12-114 (347)
148 2ra8_A Uncharacterized protein 97.3 0.00034 1.2E-08 62.7 5.9 113 20-138 136-263 (362)
149 3un9_A NLR family member X1; l 97.1 3.5E-05 1.2E-09 69.4 -2.6 112 22-142 71-197 (372)
150 3un9_A NLR family member X1; l 96.9 8.4E-05 2.9E-09 66.9 -1.2 12 78-89 101-112 (372)
151 4gt6_A Cell surface protein; l 96.8 0.12 4.2E-06 46.2 18.6 49 250-303 330-388 (394)
152 4fs7_A Uncharacterized protein 96.6 0.029 9.9E-07 50.3 12.8 48 250-302 316-375 (394)
153 4fs7_A Uncharacterized protein 96.5 0.2 6.9E-06 44.7 17.6 37 250-291 339-375 (394)
154 3rw6_A Nuclear RNA export fact 95.7 0.0087 3E-07 51.0 4.5 60 51-112 169-231 (267)
155 1io0_A Tropomodulin; LRR prote 93.6 0.013 4.4E-07 46.9 0.1 111 20-137 33-161 (185)
156 3rw6_A Nuclear RNA export fact 93.1 0.13 4.5E-06 43.7 5.6 63 75-141 167-233 (267)
157 3rfe_A Platelet glycoprotein I 87.0 0.7 2.4E-05 34.4 4.3 36 52-89 31-66 (130)
158 1io0_A Tropomodulin; LRR prote 86.3 0.17 5.8E-06 40.2 0.6 84 20-111 62-161 (185)
159 4h09_A Hypothetical leucine ri 86.2 2.7 9.3E-05 36.8 8.5 77 51-134 239-317 (379)
160 4h09_A Hypothetical leucine ri 82.6 8.5 0.00029 33.6 10.1 11 76-86 284-294 (379)
161 4gt6_A Cell surface protein; l 81.1 5 0.00017 35.4 8.0 76 51-134 264-341 (394)
162 3rfe_A Platelet glycoprotein I 79.6 1.2 4.2E-05 33.0 3.0 37 22-63 30-66 (130)
163 2lz0_A Uncharacterized protein 36.2 31 0.0011 24.0 3.3 33 252-289 18-50 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.63 E-value=2.6e-15 Score=133.84 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=75.8
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc-CC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN-RA 100 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~-~~ 100 (304)
.++++.|+|+++++..++..... +++|++|+++++ .+..++. .+..+++|++|++++|. +..++... ..
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~------l~~L~~L~L~~n-~l~~lp~--~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFR------LSHLQHMTIDAA-GLMELPD--TMQQFAGLETLTLARNP-LRALPASIASL 149 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGG------GTTCSEEEEESS-CCCCCCS--CGGGGTTCSEEEEESCC-CCCCCGGGGGC
T ss_pred ccceeEEEccCCCchhcChhhhh------CCCCCEEECCCC-CccchhH--HHhccCCCCEEECCCCc-cccCcHHHhcC
Confidence 57788888888877766544222 688888888876 5666632 24677888888888885 55555432 23
Q ss_pred CccceeecccCccceecCCCcc-------cCCCCccceeeeccccccccccc
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMH-------TSEWPALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~-------~~~l~~L~~L~l~~C~~L~~l~~ 145 (304)
++|++|++++|..+..++.... ...+++|+.|+++++ +++.+|.
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~ 200 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPA 200 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchH
Confidence 7888888888776666665321 113788888888887 4666653
No 2
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.60 E-value=1.8e-14 Score=133.77 Aligned_cols=222 Identities=21% Similarity=0.139 Sum_probs=153.3
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--C
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--R 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~ 99 (304)
.++|+.|+|++++++.+....... +++|++|+++++ ++..+++ ..+..+++|++|++++|. +..++... .
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 145 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRH-----LHHLEVLQLGRN-SIRQIEV-GAFNGLASLNTLELFDNW-LTVIPSGAFEY 145 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTT-----CTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CSBCCTTTSSS
T ss_pred CCCccEEECcCCcCceECHHHcCC-----CCCCCEEECCCC-ccCCcCh-hhccCcccCCEEECCCCc-CCccChhhhcc
Confidence 478999999999888775544333 899999999987 6777744 345688999999999986 76665442 2
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCC---CCCCCCCCCCcccccccccccccceecc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLS---QNNENDQLGIPEQQLLWPLEKSLRVTVD 176 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~---~~l~~~~~~~~~~~~l~~~~~~l~~~~~ 176 (304)
.++|++|+++++ .++.++... ...+++|+.|++.+|..++.++.... ..++.+.++......+.
T Consensus 146 l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~----------- 212 (452)
T 3zyi_A 146 LSKLRELWLRNN-PIESIPSYA-FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP----------- 212 (452)
T ss_dssp CTTCCEEECCSC-CCCEECTTT-TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-----------
T ss_pred cCCCCEEECCCC-CcceeCHhH-HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-----------
Confidence 389999999987 577776543 24689999999999988888765432 23333333332222110
Q ss_pred ccccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCccccccccccc
Q 039067 177 HQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAM 255 (304)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~ 255 (304)
....+++|++|++++|....+.. ..+..+++|+.|. ....+..+.|. .+..+++
T Consensus 213 -----------~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~ 267 (452)
T 3zyi_A 213 -----------NLTPLVGLEELEMSGNHFPEIRP--GSFHGLSSLKKLWVMNSQVSLIERN------------AFDGLAS 267 (452)
T ss_dssp -----------CCTTCTTCCEEECTTSCCSEECG--GGGTTCTTCCEEECTTSCCCEECTT------------TTTTCTT
T ss_pred -----------cccccccccEEECcCCcCcccCc--ccccCccCCCEEEeCCCcCceECHH------------HhcCCCC
Confidence 11236789999999988654422 1245677777777 43344443332 2346899
Q ss_pred cceeecccccCcccccCCCCcCCCCCCcccEEEEecCC
Q 039067 256 IKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCA 293 (304)
Q Consensus 256 L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~ 293 (304)
|++|+++++ +++.+....+. .+++|++|++.++|
T Consensus 268 L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 268 LVELNLAHN-NLSSLPHDLFT---PLRYLVELHLHHNP 301 (452)
T ss_dssp CCEEECCSS-CCSCCCTTSST---TCTTCCEEECCSSC
T ss_pred CCEEECCCC-cCCccChHHhc---cccCCCEEEccCCC
Confidence 999999988 67777555433 68899999998865
No 3
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.60 E-value=1.8e-14 Score=133.35 Aligned_cols=222 Identities=17% Similarity=0.123 Sum_probs=152.0
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--C
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--R 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~ 99 (304)
.++++.|+|++++++.+....... +++|++|+++++ ++..+++ ..+..+++|++|++++|. +..++... .
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~Ls~n-~i~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 134 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKH-----LRHLEILQLSRN-HIRTIEI-GAFNGLANLNTLELFDNR-LTTIPNGAFVY 134 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSS-----CSSCCEEECCSS-CCCEECG-GGGTTCSSCCEEECCSSC-CSSCCTTTSCS
T ss_pred CCCCcEEEccCCcCCeeCHHHhhC-----CCCCCEEECCCC-cCCccCh-hhccCCccCCEEECCCCc-CCeeCHhHhhc
Confidence 578999999999888776544333 899999999997 6777743 445689999999999984 77665432 2
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeecccccccccccCC---CCCCCCCCCCCcccccccccccccceecc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADL---SQNNENDQLGIPEQQLLWPLEKSLRVTVD 176 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~---~~~l~~~~~~~~~~~~l~~~~~~l~~~~~ 176 (304)
.++|++|+++++ .++.++... ...+++|+.|++.+|..+..++... ...++.+.++......+
T Consensus 135 l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------------ 200 (440)
T 3zyj_A 135 LSKLKELWLRNN-PIESIPSYA-FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI------------ 200 (440)
T ss_dssp CSSCCEEECCSC-CCCEECTTT-TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC------------
T ss_pred cccCceeeCCCC-cccccCHHH-hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc------------
Confidence 389999999887 577776543 2468999999999988887776532 22333333333222211
Q ss_pred ccccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCccccccccccc
Q 039067 177 HQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAM 255 (304)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~ 255 (304)
+ ....+++|++|++++|....+.. ..+..+++|+.|. ....+..+.|. .+..+++
T Consensus 201 ------~----~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~ 256 (440)
T 3zyj_A 201 ------P----NLTPLIKLDELDLSGNHLSAIRP--GSFQGLMHLQKLWMIQSQIQVIERN------------AFDNLQS 256 (440)
T ss_dssp ------C----CCTTCSSCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTCCCCEECTT------------SSTTCTT
T ss_pred ------c----ccCCCcccCEEECCCCccCccCh--hhhccCccCCEEECCCCceeEEChh------------hhcCCCC
Confidence 1 11236789999999987654422 2245677788777 33344443332 2346899
Q ss_pred cceeecccccCcccccCCCCcCCCCCCcccEEEEecCC
Q 039067 256 IKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCA 293 (304)
Q Consensus 256 L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~ 293 (304)
|++|+++++ +++.+....+. .+++|++|++.+.|
T Consensus 257 L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 257 LVEINLAHN-NLTLLPHDLFT---PLHHLERIHLHHNP 290 (440)
T ss_dssp CCEEECTTS-CCCCCCTTTTS---SCTTCCEEECCSSC
T ss_pred CCEEECCCC-CCCccChhHhc---cccCCCEEEcCCCC
Confidence 999999987 67777555433 68899999988765
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.59 E-value=6.4e-14 Score=127.52 Aligned_cols=113 Identities=17% Similarity=0.154 Sum_probs=58.4
Q ss_pred ccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc-
Q 039067 20 VALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN- 98 (304)
Q Consensus 20 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~- 98 (304)
..+++|+.|++.++.++.++...... +++|++|+++++ .+..+++ ..+..+++|++|++++|. +..++...
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~-----l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 113 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDS-----FRQVELLNLNDL-QIEEIDT-YAFAYAHTIQKLYMGFNA-IRYLPPHVF 113 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHH-----CCCCSEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred cccCCceEEEecCCchhhCChhHhcc-----cccCcEEECCCC-cccccCh-hhccCCCCcCEEECCCCC-CCcCCHHHh
Confidence 34677777777777666655432221 566666666665 4555532 223455666666666664 44333221
Q ss_pred -CCCccceeecccCccceecCCCcccCCCCccceeeeccccccccc
Q 039067 99 -RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIF 143 (304)
Q Consensus 99 -~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l 143 (304)
..++|++|+++++ .++.++... ...+++|+.|+++++ +++.+
T Consensus 114 ~~l~~L~~L~L~~n-~l~~l~~~~-~~~l~~L~~L~L~~n-~l~~~ 156 (390)
T 3o6n_A 114 QNVPLLTVLVLERN-DLSSLPRGI-FHNTPKLTTLSMSNN-NLERI 156 (390)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCBC
T ss_pred cCCCCCCEEECCCC-ccCcCCHHH-hcCCCCCcEEECCCC-ccCcc
Confidence 2255666666555 444444322 123555666665555 24443
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.59 E-value=1.6e-14 Score=128.68 Aligned_cols=200 Identities=22% Similarity=0.230 Sum_probs=145.2
Q ss_pred cccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc
Q 039067 19 KVALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN 98 (304)
Q Consensus 19 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~ 98 (304)
...+++|++|+|+++++..++..... +++|++|++++| .+..++. .+..+++|++|++++|..+..++...
T Consensus 100 l~~l~~L~~L~L~~n~l~~lp~~~~~------l~~L~~L~Ls~n-~l~~lp~--~l~~l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLMELPDTMQQ------FAGLETLTLARN-PLRALPA--SIASLNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp GGGGTTCSEEEEESSCCCCCCSCGGG------GTTCSEEEEESC-CCCCCCG--GGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred hhhCCCCCEEECCCCCccchhHHHhc------cCCCCEEECCCC-ccccCcH--HHhcCcCCCEEECCCCCCccccChhH
Confidence 44599999999999988766543322 899999999997 6777743 35789999999999998777666443
Q ss_pred C----------CCccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCCCCCCCCCCCcccccccccc
Q 039067 99 R----------ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQNNENDQLGIPEQQLLWPLE 168 (304)
Q Consensus 99 ~----------~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~ 168 (304)
. .++|++|+++++ +++.++.. ...+++|+.|++++| +++.+|..
T Consensus 171 ~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~--l~~l~~L~~L~L~~N-~l~~l~~~---------------------- 224 (328)
T 4fcg_A 171 ASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS--IANLQNLKSLKIRNS-PLSALGPA---------------------- 224 (328)
T ss_dssp EEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG--GGGCTTCCEEEEESS-CCCCCCGG----------------------
T ss_pred hhccchhhhccCCCCCEEECcCC-CcCcchHh--hcCCCCCCEEEccCC-CCCcCchh----------------------
Confidence 1 489999999998 67766643 356899999999998 47655421
Q ss_pred cccceeccccccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCccc
Q 039067 169 KSLRVTVDHQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLE 247 (304)
Q Consensus 169 ~~l~~~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~ 247 (304)
...+++|++|++++|......+ .....+++|+.|. ...+.....|.+
T Consensus 225 --------------------l~~l~~L~~L~Ls~n~~~~~~p--~~~~~l~~L~~L~L~~n~~~~~~p~~---------- 272 (328)
T 4fcg_A 225 --------------------IHHLPKLEELDLRGCTALRNYP--PIFGGRAPLKRLILKDCSNLLTLPLD---------- 272 (328)
T ss_dssp --------------------GGGCTTCCEEECTTCTTCCBCC--CCTTCCCCCCEEECTTCTTCCBCCTT----------
T ss_pred --------------------hccCCCCCEEECcCCcchhhhH--HHhcCCCCCCEEECCCCCchhhcchh----------
Confidence 0136899999999988744432 1246678888888 322334445543
Q ss_pred cccccccccceeecccccCcccccCCCCcCCCCCCcccEEEEec
Q 039067 248 KHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYY 291 (304)
Q Consensus 248 ~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~ 291 (304)
+..+++|++|++++|+.+..++.. ...+++|+.+.+..
T Consensus 273 --~~~l~~L~~L~L~~n~~~~~iP~~----l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 273 --IHRLTQLEKLDLRGCVNLSRLPSL----IAQLPANCIILVPP 310 (328)
T ss_dssp --GGGCTTCCEEECTTCTTCCCCCGG----GGGSCTTCEEECCG
T ss_pred --hhcCCCCCEEeCCCCCchhhccHH----HhhccCceEEeCCH
Confidence 347899999999999888877433 34778888887653
No 6
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.56 E-value=9.7e-14 Score=128.91 Aligned_cols=220 Identities=15% Similarity=0.072 Sum_probs=143.3
Q ss_pred ceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--CCCcc
Q 039067 26 EALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--RADQL 103 (304)
Q Consensus 26 ~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~~~L 103 (304)
..++..+.+++.++... .++|++|+++++ +++.+++ ..+..+++|++|++++|. +..+.... +.++|
T Consensus 57 ~~v~c~~~~l~~iP~~~--------~~~l~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L 125 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGI--------PSNTRYLNLMEN-NIQMIQA-DTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASL 125 (452)
T ss_dssp CEEECCSSCCSSCCSCC--------CTTCSEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred cEEEECCCCcCccCCCC--------CCCccEEECcCC-cCceECH-HHcCCCCCCCEEECCCCc-cCCcChhhccCcccC
Confidence 34444444555554431 579999999997 6777744 345789999999999995 66665332 23899
Q ss_pred ceeecccCccceecCCCcccCCCCccceeeecccccccccccCCC---CCCCCCCCCCcccccccccccccceecccccc
Q 039067 104 TTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLS---QNNENDQLGIPEQQLLWPLEKSLRVTVDHQLT 180 (304)
Q Consensus 104 ~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~---~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~l~ 180 (304)
++|+++++ +++.++... ...+++|+.|+++++ +++.++.... +.++.+.++.... +.
T Consensus 126 ~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~-----------------l~ 185 (452)
T 3zyi_A 126 NTLELFDN-WLTVIPSGA-FEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKK-----------------LE 185 (452)
T ss_dssp CEEECCSS-CCSBCCTTT-SSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTT-----------------CC
T ss_pred CEEECCCC-cCCccChhh-hcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCC-----------------cc
Confidence 99999998 678777653 246899999999998 4777765322 2233322222110 00
Q ss_pred ceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCcccccccccccccee
Q 039067 181 SLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIKEL 259 (304)
Q Consensus 181 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~~L 259 (304)
.+.. +.-..+++|+.|++++|....+ .....+++|+.|. ....+....|.. +..+++|++|
T Consensus 186 ~i~~--~~~~~l~~L~~L~L~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~------------~~~l~~L~~L 247 (452)
T 3zyi_A 186 YISE--GAFEGLFNLKYLNLGMCNIKDM----PNLTPLVGLEELEMSGNHFPEIRPGS------------FHGLSSLKKL 247 (452)
T ss_dssp EECT--TTTTTCTTCCEEECTTSCCSSC----CCCTTCTTCCEEECTTSCCSEECGGG------------GTTCTTCCEE
T ss_pred ccCh--hhccCCCCCCEEECCCCccccc----ccccccccccEEECcCCcCcccCccc------------ccCccCCCEE
Confidence 0000 0111368899999998876544 2245677888887 444454444432 4478999999
Q ss_pred ecccccCcccccCCCCcCCCCCCcccEEEEecCCCceecc
Q 039067 260 KLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCARNAESS 299 (304)
Q Consensus 260 ~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~~L~~l~ 299 (304)
.++++ +++.+....+. .+++|++|+++++ +|+.++
T Consensus 248 ~L~~n-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~ 282 (452)
T 3zyi_A 248 WVMNS-QVSLIERNAFD---GLASLVELNLAHN-NLSSLP 282 (452)
T ss_dssp ECTTS-CCCEECTTTTT---TCTTCCEEECCSS-CCSCCC
T ss_pred EeCCC-cCceECHHHhc---CCCCCCEEECCCC-cCCccC
Confidence 99987 56666554433 7899999999987 455544
No 7
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.55 E-value=1.5e-13 Score=127.16 Aligned_cols=221 Identities=14% Similarity=0.084 Sum_probs=144.0
Q ss_pred cceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--CCCc
Q 039067 25 LEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--RADQ 102 (304)
Q Consensus 25 L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~~~ 102 (304)
...+...+.+++.++... .++++.|+++++ +++.+++ ..+..+++|++|++++|. +..+.... +.++
T Consensus 45 ~~~v~c~~~~l~~iP~~~--------~~~l~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~ 113 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI--------STNTRLLNLHEN-QIQIIKV-NSFKHLRHLEILQLSRNH-IRTIEIGAFNGLAN 113 (440)
T ss_dssp SCEEECCSCCCSSCCSCC--------CTTCSEEECCSC-CCCEECT-TTTSSCSSCCEEECCSSC-CCEECGGGGTTCSS
T ss_pred CCEEEeCCCCcCcCCCCC--------CCCCcEEEccCC-cCCeeCH-HHhhCCCCCCEEECCCCc-CCccChhhccCCcc
Confidence 344555555666665442 688999999997 6887744 345789999999999996 66554332 2489
Q ss_pred cceeecccCccceecCCCcccCCCCccceeeecccccccccccCCC---CCCCCCCCCCcccccccccccccceeccccc
Q 039067 103 LTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLS---QNNENDQLGIPEQQLLWPLEKSLRVTVDHQL 179 (304)
Q Consensus 103 L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~---~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~l 179 (304)
|++|+++++ +++.++... ...+++|+.|+++++. ++.++.... +.++.+.++.....
T Consensus 114 L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l----------------- 173 (440)
T 3zyj_A 114 LNTLELFDN-RLTTIPNGA-FVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRL----------------- 173 (440)
T ss_dssp CCEEECCSS-CCSSCCTTT-SCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTC-----------------
T ss_pred CCEEECCCC-cCCeeCHhH-hhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCc-----------------
Confidence 999999997 788777643 2468999999999984 777665322 22333222211100
Q ss_pred cceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCccccccccccccce
Q 039067 180 TSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIKE 258 (304)
Q Consensus 180 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~~ 258 (304)
..+.. ..-..+++|+.|++++|....+ .....+++|+.|. ....+..+.|.. +..+++|++
T Consensus 174 ~~i~~--~~~~~l~~L~~L~L~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~------------~~~l~~L~~ 235 (440)
T 3zyj_A 174 SYISE--GAFEGLSNLRYLNLAMCNLREI----PNLTPLIKLDELDLSGNHLSAIRPGS------------FQGLMHLQK 235 (440)
T ss_dssp CEECT--TTTTTCSSCCEEECTTSCCSSC----CCCTTCSSCCEEECTTSCCCEECTTT------------TTTCTTCCE
T ss_pred ceeCc--chhhcccccCeecCCCCcCccc----cccCCCcccCEEECCCCccCccChhh------------hccCccCCE
Confidence 00000 0111368899999998876543 2245677888887 433455444432 347899999
Q ss_pred eecccccCcccccCCCCcCCCCCCcccEEEEecCCCceecc
Q 039067 259 LKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCARNAESS 299 (304)
Q Consensus 259 L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~~L~~l~ 299 (304)
|.+.++ +++.+....+. .+++|++|+++++ +++.++
T Consensus 236 L~L~~n-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~ 271 (440)
T 3zyj_A 236 LWMIQS-QIQVIERNAFD---NLQSLVEINLAHN-NLTLLP 271 (440)
T ss_dssp EECTTC-CCCEECTTSST---TCTTCCEEECTTS-CCCCCC
T ss_pred EECCCC-ceeEEChhhhc---CCCCCCEEECCCC-CCCccC
Confidence 999987 57777555433 7899999999887 355443
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.53 E-value=1.5e-13 Score=119.62 Aligned_cols=203 Identities=19% Similarity=0.192 Sum_probs=128.8
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--C
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--R 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~ 99 (304)
.++|++|++++++++.+....... +++|++|+++++ .+..+.+ ..+..+++|++|++++|..+..+.... .
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~-----~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRA-----CRNLTILWLHSN-VLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPATFHG 103 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTT-----CTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CCCceEEEeeCCcCCccCHHHccc-----CCCCCEEECCCC-ccceeCH-hhcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence 678999999999888776543333 899999999987 6777744 334678999999999997666663322 2
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCCCCCCCCCCCcccccccccccccceeccccc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQNNENDQLGIPEQQLLWPLEKSLRVTVDHQL 179 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~l 179 (304)
.++|++|+++++ .+..+.... ...+++|+.|+++++ +++.++....
T Consensus 104 l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~------------------------------- 149 (285)
T 1ozn_A 104 LGRLHTLHLDRC-GLQELGPGL-FRGLAALQYLYLQDN-ALQALPDDTF------------------------------- 149 (285)
T ss_dssp CTTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTT-------------------------------
T ss_pred CcCCCEEECCCC-cCCEECHhH-hhCCcCCCEEECCCC-cccccCHhHh-------------------------------
Confidence 389999999987 466654432 236899999999998 4665553210
Q ss_pred cceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCccccccccccccce
Q 039067 180 TSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIKE 258 (304)
Q Consensus 180 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~~ 258 (304)
..+++|+.|++++|....+.. .....+++|+.|. ....+....|.. +..+++|++
T Consensus 150 ----------~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~------------~~~l~~L~~ 205 (285)
T 1ozn_A 150 ----------RDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQNRVAHVHPHA------------FRDLGRLMT 205 (285)
T ss_dssp ----------TTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCEECTTT------------TTTCTTCCE
T ss_pred ----------ccCCCccEEECCCCcccccCH--HHhcCccccCEEECCCCcccccCHhH------------ccCcccccE
Confidence 125677777777765433311 1134456666666 323333333322 235667777
Q ss_pred eecccccCcccccCCCCcCCCCCCcccEEEEecCC
Q 039067 259 LKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCA 293 (304)
Q Consensus 259 L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~ 293 (304)
|+++++ +++.+.... ...+++|++|++.+++
T Consensus 206 L~l~~n-~l~~~~~~~---~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 206 LYLFAN-NLSALPTEA---LAPLRALQYLRLNDNP 236 (285)
T ss_dssp EECCSS-CCSCCCHHH---HTTCTTCCEEECCSSC
T ss_pred eeCCCC-cCCcCCHHH---cccCcccCEEeccCCC
Confidence 777766 444442221 2256677777776654
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=3.2e-13 Score=129.78 Aligned_cols=37 Identities=27% Similarity=0.351 Sum_probs=22.2
Q ss_pred cccccceeecccccCcccccCCCCcCCCCCCcccEEEEecCC
Q 039067 252 KLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCA 293 (304)
Q Consensus 252 ~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~ 293 (304)
.+++|+.|+++++ .+..++.. ...+++|+.|++++|.
T Consensus 299 ~l~~L~~L~Ls~N-~l~~i~~~----~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 299 PIPTLKVLDLSHN-HLLHVERN----QPQFDRLENLYLDHNS 335 (597)
T ss_dssp CCTTCCEEECCSS-CCCCCGGG----HHHHTTCSEEECCSSC
T ss_pred cCCCCcEEECCCC-CCCccCcc----cccCCCCCEEECCCCC
Confidence 4667777777766 34444221 2356777777777764
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.50 E-value=6.2e-13 Score=118.87 Aligned_cols=248 Identities=19% Similarity=0.127 Sum_probs=111.9
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCC
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRA 100 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 100 (304)
.+++|++|++++|+++.+.. ... +++|++|++++| .++.++ ....+++|++|++++|. +..++.....
T Consensus 64 ~~~~L~~L~l~~n~i~~~~~--~~~-----l~~L~~L~L~~n-~i~~~~---~~~~l~~L~~L~l~~n~-i~~~~~~~~l 131 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDISP--LSN-----LVKLTNLYIGTN-KITDIS---ALQNLTNLRELYLNEDN-ISDISPLANL 131 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTT-----CTTCCEEECCSS-CCCCCG---GGTTCTTCSEEECTTSC-CCCCGGGTTC
T ss_pred hcCCccEEEccCCccccchh--hhc-----CCcCCEEEccCC-cccCch---HHcCCCcCCEEECcCCc-ccCchhhccC
Confidence 35566666666655544332 111 566666666655 444442 23455666666666654 4433332233
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeeccccccccccc-CCCCCCCCCCCCCccccccccc--ccccc-eec-
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA-DLSQNNENDQLGIPEQQLLWPL--EKSLR-VTV- 175 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~-~~~~~l~~~~~~~~~~~~l~~~--~~~l~-~~~- 175 (304)
++|+.|+++++..+..++. ...+++|+.|++.+|. ++.++. ...+.++.+.++......+... -..++ +..
T Consensus 132 ~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESK-VKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY 207 (347)
T ss_dssp TTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred CceeEEECCCCCCcccccc---hhhCCCCcEEEecCCC-cCCchhhccCCCCCEEEccCCcccccccccCCCccceeecc
Confidence 5666666666654444332 2345666666666653 433322 2222333333322221111100 00000 000
Q ss_pred cccccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccch-hhhhhcc--------Cc
Q 039067 176 DHQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPI-WNVFSEE--------GS 245 (304)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~-~~~~~l~--------~~ 245 (304)
...++.. .....+++|++|++++|...... +...+++|+.|. ....+..+ +. .....+. -.
T Consensus 208 ~n~l~~~----~~~~~~~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 208 VNQITDI----TPVANMTRLNSLKIGNNKITDLS----PLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp SSCCCCC----GGGGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC
T ss_pred cCCCCCC----chhhcCCcCCEEEccCCccCCCc----chhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccC
Confidence 0001000 01123678888888887754331 245667777776 22223321 21 0011111 00
Q ss_pred cccccccccccceeecccccCcccccCCCCcCCCCCCcccEEEEecCCCceec
Q 039067 246 LEKHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCARNAES 298 (304)
Q Consensus 246 ~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~~L~~l 298 (304)
....+..+++|++|++++|. +....... ...+++|++|++++|+ ++.+
T Consensus 279 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---l~~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 279 DISVLNNLSQLNSLFLNNNQ-LGNEDMEV---IGGLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp CCGGGGGCTTCSEEECCSSC-CCGGGHHH---HHTCTTCSEEECCSSS-CCCC
T ss_pred CChhhcCCCCCCEEECcCCc-CCCcChhH---hhccccCCEEEccCCc-cccc
Confidence 11224556677777777663 33332221 2356788888888776 4433
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.49 E-value=5.2e-13 Score=119.34 Aligned_cols=229 Identities=16% Similarity=0.115 Sum_probs=139.3
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCC
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRA 100 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 100 (304)
.+++|++|.+.++++..+.. ... +++|++|++++| .++.+++ ...+++|++|++++|. +..+..-...
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~--~~~-----~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n~-i~~~~~~~~l 109 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG--IEY-----LTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTNK-ITDISALQNL 109 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT--GGG-----CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCGGGTTC
T ss_pred hcccccEEEEeCCccccchh--hhh-----cCCccEEEccCC-ccccchh---hhcCCcCCEEEccCCc-ccCchHHcCC
Confidence 58999999999998776542 111 899999999998 7888744 5789999999999994 7766544445
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeeccccccccccc-CCCCCCCCCCCCCcccccccccccccceeccccc
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA-DLSQNNENDQLGIPEQQLLWPLEKSLRVTVDHQL 179 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~-~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~l 179 (304)
++|++|+++++ .+..++. ...+++|+.|++++|+.++.++. .....++.+.++.........
T Consensus 110 ~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------------- 172 (347)
T 4fmz_A 110 TNLRELYLNED-NISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP------------- 172 (347)
T ss_dssp TTCSEEECTTS-CCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-------------
T ss_pred CcCCEEECcCC-cccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-------------
Confidence 99999999987 4666554 34689999999999987776654 333344444433322221111
Q ss_pred cceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhcc--------Ccccccc
Q 039067 180 TSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEE--------GSLEKHV 250 (304)
Q Consensus 180 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~--------~~~~~~~ 250 (304)
...+++|++|++++|....+. +...+++|+.+. ....+....+......+. -.....+
T Consensus 173 ---------~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 239 (347)
T 4fmz_A 173 ---------IANLTDLYSLSLNYNQIEDIS----PLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPL 239 (347)
T ss_dssp ---------GGGCTTCSEEECTTSCCCCCG----GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGG
T ss_pred ---------hccCCCCCEEEccCCcccccc----cccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcch
Confidence 112455666666655443221 123344444444 211222211111111111 0000114
Q ss_pred ccccccceeecccccCcccccCCCCcCCCCCCcccEEEEecCCCceec
Q 039067 251 GKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCARNAES 298 (304)
Q Consensus 251 ~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~~L~~l 298 (304)
..+++|++|+++++ .++.+ . ....+++|++|++++| +++.+
T Consensus 240 ~~l~~L~~L~l~~n-~l~~~--~---~~~~l~~L~~L~l~~n-~l~~~ 280 (347)
T 4fmz_A 240 ANLSQLTWLEIGTN-QISDI--N---AVKDLTKLKMLNVGSN-QISDI 280 (347)
T ss_dssp TTCTTCCEEECCSS-CCCCC--G---GGTTCTTCCEEECCSS-CCCCC
T ss_pred hcCCCCCEEECCCC-ccCCC--h---hHhcCCCcCEEEccCC-ccCCC
Confidence 56788888888887 45544 1 2347789999999887 35544
No 12
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.48 E-value=3.1e-13 Score=114.68 Aligned_cols=201 Identities=15% Similarity=0.092 Sum_probs=137.8
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--C
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--R 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~ 99 (304)
.++|++|++++++++.+....... +++|++|+++++..++.+++ .....+++|++|++++|..++.++... .
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~-----l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~ 103 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSN-----LPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTT-----CTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred CCcccEEEEeCCcceEECHHHccC-----CCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence 458999999999888877654333 89999999999865888844 334688999999999966687776433 3
Q ss_pred CCccceeecccCccceecCCCcccCCCCccc---eeeecccccccccccCCCCCCCCCCCCCcccccccccccccceecc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALE---SLLVRHCDKLKIFAADLSQNNENDQLGIPEQQLLWPLEKSLRVTVD 176 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~---~L~l~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~ 176 (304)
.++|++|+++++ .++.++. ...+++|+ .|+++++++++.++....
T Consensus 104 l~~L~~L~l~~n-~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~~~---------------------------- 151 (239)
T 2xwt_C 104 LPLLKFLGIFNT-GLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPVNAF---------------------------- 151 (239)
T ss_dssp CTTCCEEEEEEE-CCCSCCC---CTTCCBCCSEEEEEEESCTTCCEECTTTT----------------------------
T ss_pred CCCCCEEeCCCC-CCccccc---cccccccccccEEECCCCcchhhcCcccc----------------------------
Confidence 489999999887 5666664 23566776 999999877876653210
Q ss_pred ccccceeeeeccchhccccc-EEEeccccccccccccCccccccCccccc--ccCCCCcccchhhhhhccCccccccccc
Q 039067 177 HQLTSLVIMIDDDQIVSNFK-ELSLSGKDVKMILQADFPQHLFGSLKQLE--IVGDDSTCFPIWNVFSEEGSLEKHVGKL 253 (304)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~L~-~L~l~~c~~~~~~~~~~~~~~l~~L~~L~--~c~~~~~~~p~~~~~~l~~~~~~~~~~l 253 (304)
..+++|+ +|+++++....+.. ..+.. ++|+.|. .+..+..+.+. .+..+
T Consensus 152 -------------~~l~~L~~~L~l~~n~l~~i~~--~~~~~-~~L~~L~L~~n~~l~~i~~~------------~~~~l 203 (239)
T 2xwt_C 152 -------------QGLCNETLTLKLYNNGFTSVQG--YAFNG-TKLDAVYLNKNKYLTVIDKD------------AFGGV 203 (239)
T ss_dssp -------------TTTBSSEEEEECCSCCCCEECT--TTTTT-CEEEEEECTTCTTCCEECTT------------TTTTC
T ss_pred -------------cchhcceeEEEcCCCCCcccCH--hhcCC-CCCCEEEcCCCCCcccCCHH------------Hhhcc
Confidence 1267888 89998887543321 11222 6777777 33234433222 13357
Q ss_pred -cccceeecccccCcccccCCCCcCCCCCCcccEEEEecCCCc
Q 039067 254 -AMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCARN 295 (304)
Q Consensus 254 -~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~~L 295 (304)
++|++|++++. +++.+... .|++|+.|++.+++.|
T Consensus 204 ~~~L~~L~l~~N-~l~~l~~~------~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 204 YSGPSLLDVSQT-SVTALPSK------GLEHLKELIARNTWTL 239 (239)
T ss_dssp SBCCSEEECTTC-CCCCCCCT------TCTTCSEEECTTC---
T ss_pred ccCCcEEECCCC-ccccCChh------HhccCceeeccCccCC
Confidence 89999999985 56666332 6789999999988764
No 13
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.48 E-value=1.5e-12 Score=115.96 Aligned_cols=243 Identities=16% Similarity=0.188 Sum_probs=125.2
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRAD 101 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~ 101 (304)
+++|+.|++++++++.+....... +++|++|++++| ++..+.+ ..+..+++|++|+++++. +..++.... +
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~-----l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~l~~~~~-~ 123 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKG-----LQHLYALVLVNN-KISKIHE-KAFSPLRKLQKLYISKNH-LVEIPPNLP-S 123 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTT-----CTTCCEEECCSS-CCCEECG-GGSTTCTTCCEEECCSSC-CCSCCSSCC-T
T ss_pred CCCCeEEECCCCcCCccCHhHhhC-----CCCCcEEECCCC-ccCccCH-hHhhCcCCCCEEECCCCc-CCccCcccc-c
Confidence 467888888888776664433222 788888888876 5666633 334677888888888875 666654444 7
Q ss_pred ccceeecccCccceecCCCcccCCCCccceeeeccccccccccc--CCCC--CCCCCCCCCcccccccccc-cccc-eec
Q 039067 102 QLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA--DLSQ--NNENDQLGIPEQQLLWPLE-KSLR-VTV 175 (304)
Q Consensus 102 ~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~--~~~~--~l~~~~~~~~~~~~l~~~~-~~l~-~~~ 175 (304)
+|++|+++++ .++.++... ...+++|+.|++.++. ++..+. .... .++.+.++......+.... ..++ +..
T Consensus 124 ~L~~L~l~~n-~i~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l 200 (332)
T 2ft3_A 124 SLVELRIHDN-RIRKVPKGV-FSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHL 200 (332)
T ss_dssp TCCEEECCSS-CCCCCCSGG-GSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBC
T ss_pred cCCEEECCCC-ccCccCHhH-hCCCccCCEEECCCCc-cccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEEC
Confidence 8888888776 455555432 2357888888888773 543211 1111 2333333222211110000 0000 000
Q ss_pred -cccccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCccccccccc
Q 039067 176 -DHQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKL 253 (304)
Q Consensus 176 -~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l 253 (304)
...++.... ..-..+++|+.|++++|....+.. .....+++|+.|. ....+. .+|. .+..+
T Consensus 201 ~~n~i~~~~~--~~l~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~-~lp~------------~l~~l 263 (332)
T 2ft3_A 201 DHNKIQAIEL--EDLLRYSKLYRLGLGHNQIRMIEN--GSLSFLPTLRELHLDNNKLS-RVPA------------GLPDL 263 (332)
T ss_dssp CSSCCCCCCT--TSSTTCTTCSCCBCCSSCCCCCCT--TGGGGCTTCCEEECCSSCCC-BCCT------------TGGGC
T ss_pred CCCcCCccCH--HHhcCCCCCCEEECCCCcCCcCCh--hHhhCCCCCCEEECCCCcCe-ecCh------------hhhcC
Confidence 000000000 001124556666666555432211 1133455555555 222222 2332 23467
Q ss_pred cccceeecccccCcccccCCCCcC---CCCCCcccEEEEecCCC
Q 039067 254 AMIKELKLYRPYHLKQLGKQDSKL---GPIFQYLEILEVYYCAR 294 (304)
Q Consensus 254 ~~L~~L~l~~c~~L~~i~~~~~~~---~~~~~~L~~L~i~~C~~ 294 (304)
++|++|+++++ .++.+....+.. ...+++|+.|++.++|-
T Consensus 264 ~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 264 KLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp TTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred ccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcc
Confidence 88888888876 466664443221 11257788888888873
No 14
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.47 E-value=1.4e-12 Score=114.56 Aligned_cols=225 Identities=17% Similarity=0.065 Sum_probs=141.8
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccc-hhhhhcCCcccEEeeccCccccchhcc-cC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFS-ASMIGSLKQLQHLDIRHCEDLQEIISE-NR 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~-~~~~~~l~~L~~L~i~~c~~l~~l~~~-~~ 99 (304)
.++|++|++++++++.+....... +++|++|+++++ .+..... ......+++|++|++++|. +..++.. ..
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~-----l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~ 99 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDK-----LTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLG 99 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTT-----CTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEET
T ss_pred CCCCCEEECCCCccCccCHhHhhc-----cccCCEEECCCC-ccCcccCcccccccccccCEEECCCCc-cccChhhcCC
Confidence 578999999999888776543333 899999999987 5654421 1223468999999999996 6555543 23
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeecccccccccccC---CCCCCCCCCCCCccccc-ccccccccceec
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAAD---LSQNNENDQLGIPEQQL-LWPLEKSLRVTV 175 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~---~~~~l~~~~~~~~~~~~-l~~~~~~l~~~~ 175 (304)
.++|++|+++++ +++.++.......+++|+.|+++++. ++..+.. ....++.+.++...... ..+
T Consensus 100 l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------- 168 (306)
T 2z66_A 100 LEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--------- 168 (306)
T ss_dssp CTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEEC---------
T ss_pred CCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccch---------
Confidence 489999999987 56766542233468999999999984 5544332 12233333333222111 000
Q ss_pred cccccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCcccccccccc
Q 039067 176 DHQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLA 254 (304)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~ 254 (304)
+.-..+++|+.|++++|....+.. .....+++|+.|. ....+....+. .+..++
T Consensus 169 -----------~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~l~ 223 (306)
T 2z66_A 169 -----------DIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQVLNMSHNNFFSLDTF------------PYKCLN 223 (306)
T ss_dssp -----------SCCTTCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTSCCSBCCSG------------GGTTCT
T ss_pred -----------hHHhhCcCCCEEECCCCCcCCcCH--HHhcCCCCCCEEECCCCccCccChh------------hccCcc
Confidence 011236789999999887644322 1245667788877 33333332221 234688
Q ss_pred ccceeecccccCcccccCCCCcCCCCC-CcccEEEEecCC
Q 039067 255 MIKELKLYRPYHLKQLGKQDSKLGPIF-QYLEILEVYYCA 293 (304)
Q Consensus 255 ~L~~L~l~~c~~L~~i~~~~~~~~~~~-~~L~~L~i~~C~ 293 (304)
+|++|+++++ .+.......+ ..+ ++|++|++++++
T Consensus 224 ~L~~L~L~~N-~l~~~~~~~~---~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 224 SLQVLDYSLN-HIMTSKKQEL---QHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCCEEECTTS-CCCBCSSSSC---CCCCTTCCEEECTTCC
T ss_pred cCCEeECCCC-CCcccCHHHH---HhhhccCCEEEccCCC
Confidence 9999999988 4544433322 245 489999998875
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.47 E-value=1.3e-12 Score=122.01 Aligned_cols=106 Identities=19% Similarity=0.165 Sum_probs=58.1
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--C
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--R 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~ 99 (304)
.++|++|+|++++++.+....... +++|++|+++++ .+..+.+ ..+..+++|++|++++|. +..++... .
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 102 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFAS-----FPHLEELELNEN-IVSAVEP-GAFNNLFNLRTLGLRSNR-LKLIPLGVFTG 102 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTT-----CTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CCSCCTTSSTT
T ss_pred CCCCcEEECCCCccceECHhHccC-----CCCCCEEECCCC-ccCEeCh-hhhhCCccCCEEECCCCc-CCccCcccccC
Confidence 456777777777666654433222 677777777765 5555533 223566777777777664 55444322 2
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeeccc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHC 137 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C 137 (304)
.++|++|+++++ ++..+.... ...+++|+.|++.++
T Consensus 103 l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 103 LSNLTKLDISEN-KIVILLDYM-FQDLYNLKSLEVGDN 138 (477)
T ss_dssp CTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEEECCT
T ss_pred CCCCCEEECCCC-ccccCChhH-ccccccCCEEECCCC
Confidence 266666666655 333332221 123555555555554
No 16
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.46 E-value=1.1e-12 Score=116.63 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=56.4
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRAD 101 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~ 101 (304)
.++|+.|++++++++.+....... +++|++|++++| .+..+.+. .+..+++|++|+++++. +.+++.... +
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~l~~~~~-~ 121 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKN-----LKNLHTLILINN-KISKISPG-AFAPLVKLERLYLSKNQ-LKELPEKMP-K 121 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTT-----CTTCCEEECCSS-CCCCBCTT-TTTTCTTCCEEECCSSC-CSBCCSSCC-T
T ss_pred CCCCeEEECCCCcCCEeChhhhcc-----CCCCCEEECCCC-cCCeeCHH-HhcCCCCCCEEECCCCc-CCccChhhc-c
Confidence 356666666666665554432222 667777777665 45555332 23566777777777664 554443333 5
Q ss_pred ccceeecccCccceecCCCcccCCCCccceeeeccc
Q 039067 102 QLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHC 137 (304)
Q Consensus 102 ~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C 137 (304)
+|++|+++++ ++..++... ...+++|+.|+++++
T Consensus 122 ~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 122 TLQELRVHEN-EITKVRKSV-FNGLNQMIVVELGTN 155 (330)
T ss_dssp TCCEEECCSS-CCCBBCHHH-HTTCTTCCEEECCSS
T ss_pred cccEEECCCC-cccccCHhH-hcCCccccEEECCCC
Confidence 6666666655 344333211 123555666666555
No 17
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.46 E-value=8e-13 Score=116.66 Aligned_cols=189 Identities=16% Similarity=0.164 Sum_probs=121.8
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCC
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRA 100 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 100 (304)
.+++|+.|++.+++++.+.. . .. +++|++|++++| .+..+++ ...+++|++|++++|. +..+..-...
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~-~-~~-----l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~~l 106 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEG-V-QY-----LNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNVSAIAGL 106 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTT-G-GG-----CTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCCGGGTTC
T ss_pred HcCCcCEEEeeCCCccCchh-h-hc-----cCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc-CCCchhhcCC
Confidence 38899999999997776532 1 11 899999999987 6777744 5688999999999986 7666544445
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCCCCCCCCCCCcccccccccccccceecccccc
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQNNENDQLGIPEQQLLWPLEKSLRVTVDHQLT 180 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~l~ 180 (304)
++|+.|+++++ +++.++. ...+++|+.|+++++ +++.++.
T Consensus 107 ~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~----------------------------------- 146 (308)
T 1h6u_A 107 QSIKTLDLTST-QITDVTP---LAGLSNLQVLYLDLN-QITNISP----------------------------------- 146 (308)
T ss_dssp TTCCEEECTTS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGG-----------------------------------
T ss_pred CCCCEEECCCC-CCCCchh---hcCCCCCCEEECCCC-ccCcCcc-----------------------------------
Confidence 89999999887 5666543 346889999999988 4665542
Q ss_pred ceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCcccccccccccccee
Q 039067 181 SLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIKEL 259 (304)
Q Consensus 181 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~~L 259 (304)
-..+++|+.|++++|....+ .+...+++|+.|. ....+....+ +..+++|++|
T Consensus 147 --------l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~~~--------------l~~l~~L~~L 200 (308)
T 1h6u_A 147 --------LAGLTNLQYLSIGNAQVSDL----TPLANLSKLTTLKADDNKISDISP--------------LASLPNLIEV 200 (308)
T ss_dssp --------GGGCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSSCCCCCGG--------------GGGCTTCCEE
T ss_pred --------ccCCCCccEEEccCCcCCCC----hhhcCCCCCCEEECCCCccCcChh--------------hcCCCCCCEE
Confidence 01256677777776654332 1134556666665 2222322211 2356677777
Q ss_pred ecccccCcccccCCCCcCCCCCCcccEEEEecCC
Q 039067 260 KLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCA 293 (304)
Q Consensus 260 ~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~ 293 (304)
+++++ .++.+.. ...+++|++|++++++
T Consensus 201 ~L~~N-~l~~~~~-----l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 201 HLKNN-QISDVSP-----LANTSNLFIVTLTNQT 228 (308)
T ss_dssp ECTTS-CCCBCGG-----GTTCTTCCEEEEEEEE
T ss_pred EccCC-ccCcccc-----ccCCCCCCEEEccCCe
Confidence 77766 3443321 2356667777766654
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.46 E-value=7.1e-13 Score=119.00 Aligned_cols=237 Identities=19% Similarity=0.106 Sum_probs=146.7
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc--cC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE--NR 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~ 99 (304)
.++|++|++++++++.+....... +++|++|+++++ ++..+++ .....+++|++|++++|. +..++.. ..
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~-----l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 122 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQR-----CVNLQALVLTSN-GINTIEE-DSFSSLGSLEHLDLSYNY-LSNLSSSWFKP 122 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTT-----CTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSSCCHHHHTT
T ss_pred cccCcEEECCCCcCcccCHHHhcc-----CCCCCEEECCCC-ccCccCH-hhcCCCCCCCEEECCCCc-CCcCCHhHhCC
Confidence 568999999999888876543333 899999999987 6777744 334678999999999985 6666543 23
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCC---CCCCCCCCCCcccccccccccccceecc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLS---QNNENDQLGIPEQQLLWPLEKSLRVTVD 176 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~---~~l~~~~~~~~~~~~l~~~~~~l~~~~~ 176 (304)
.++|++|+++++ .++.++.......+++|+.|+++++..++.++.... +.++.+.++........+
T Consensus 123 l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------- 191 (353)
T 2z80_A 123 LSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP---------- 191 (353)
T ss_dssp CTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT----------
T ss_pred CccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH----------
Confidence 489999999987 677766522234689999999999876766643221 122222211111110000
Q ss_pred ccccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhh-----hcc-------
Q 039067 177 HQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVF-----SEE------- 243 (304)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~-----~l~------- 243 (304)
+.-..+++|++|+++++....+.. .....+++|+.|. ....+....+..+.. .+.
T Consensus 192 ----------~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 192 ----------KSLKSIQNVSHLILHMKQHILLLE--IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp ----------TTTTTCSEEEEEEEECSCSTTHHH--HHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred ----------HHHhccccCCeecCCCCccccchh--hhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 011136789999998887533211 1123467787777 322233221111100 000
Q ss_pred -------CccccccccccccceeecccccCcccccCCCCcCCCCCCcccEEEEecCC
Q 039067 244 -------GSLEKHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCA 293 (304)
Q Consensus 244 -------~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~ 293 (304)
......+..+++|++|+++++ +++.+....+ ..+++|++|++.+++
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~---~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIF---DRLTSLQKIWLHTNP 312 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSSC
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHH---hcCCCCCEEEeeCCC
Confidence 001123456889999999988 6777755432 378999999999986
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.45 E-value=1.1e-12 Score=122.47 Aligned_cols=225 Identities=20% Similarity=0.201 Sum_probs=145.4
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc--c
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE--N 98 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~--~ 98 (304)
.+++|++|+|+++++..+....... +++|++|+++++ .+..+.+ ..+..+++|++|++++|. +..++.. .
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~l~ 173 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQD-----LYNLKSLEVGDN-DLVYISH-RAFSGLNSLEQLTLEKCN-LTSIPTEALS 173 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTT-----CTTCCEEEECCT-TCCEECT-TSSTTCTTCCEEEEESCC-CSSCCHHHHT
T ss_pred CCCCCCEEECCCCccccCChhHccc-----cccCCEEECCCC-ccceeCh-hhccCCCCCCEEECCCCc-CcccChhHhc
Confidence 4899999999999887764443333 899999999986 5666643 334678999999999985 6555432 2
Q ss_pred CCCccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCC--CCCCCCCCCcccccccccccccceecc
Q 039067 99 RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQ--NNENDQLGIPEQQLLWPLEKSLRVTVD 176 (304)
Q Consensus 99 ~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~--~l~~~~~~~~~~~~l~~~~~~l~~~~~ 176 (304)
..++|+.|+++++ .+..+.... ...+++|+.|++++|+.+..++..... .++.+.++.....
T Consensus 174 ~l~~L~~L~l~~n-~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-------------- 237 (477)
T 2id5_A 174 HLHGLIVLRLRHL-NINAIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-------------- 237 (477)
T ss_dssp TCTTCCEEEEESC-CCCEECTTC-SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC--------------
T ss_pred ccCCCcEEeCCCC-cCcEeChhh-cccCcccceeeCCCCccccccCcccccCccccEEECcCCccc--------------
Confidence 3389999999887 566665443 246889999999999877766643211 2222221111111
Q ss_pred ccccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCccccccccccc
Q 039067 177 HQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAM 255 (304)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~ 255 (304)
..+. ..-..+++|+.|++++|....+.. ..+..+++|+.|. ....+..+.|. .+..+++
T Consensus 238 ----~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~ 297 (477)
T 2id5_A 238 ----AVPY--LAVRHLVYLRFLNLSYNPISTIEG--SMLHELLRLQEIQLVGGQLAVVEPY------------AFRGLNY 297 (477)
T ss_dssp ----SCCH--HHHTTCTTCCEEECCSSCCCEECT--TSCTTCTTCCEEECCSSCCSEECTT------------TBTTCTT
T ss_pred ----ccCH--HHhcCccccCeeECCCCcCCccCh--hhccccccCCEEECCCCccceECHH------------HhcCccc
Confidence 1000 011136789999999887644322 1245677788877 43344444342 2346789
Q ss_pred cceeecccccCcccccCCCCcCCCCCCcccEEEEecCC
Q 039067 256 IKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCA 293 (304)
Q Consensus 256 L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~ 293 (304)
|++|+++++ +++.+....+. .+++|++|++.+++
T Consensus 298 L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 298 LRVLNVSGN-QLTTLEESVFH---SVGNLETLILDSNP 331 (477)
T ss_dssp CCEEECCSS-CCSCCCGGGBS---CGGGCCEEECCSSC
T ss_pred CCEEECCCC-cCceeCHhHcC---CCcccCEEEccCCC
Confidence 999999987 56666544333 67889999888765
No 20
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.44 E-value=2.1e-12 Score=114.72 Aligned_cols=230 Identities=15% Similarity=0.069 Sum_probs=142.9
Q ss_pred ccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc--cCCC
Q 039067 24 NLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE--NRAD 101 (304)
Q Consensus 24 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~~~ 101 (304)
+|+.+++++++++.++... .++|+.|+++++ +++.+++ ..+..+++|++|++++|. +..+... ...+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~--------~~~l~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 100 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL--------PPDTALLDLQNN-KITEIKD-GDFKNLKNLHTLILINNK-ISKISPGAFAPLV 100 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC--------CTTCCEEECCSS-CCCCBCT-TTTTTCTTCCEEECCSSC-CCCBCTTTTTTCT
T ss_pred CCeEEEecCCCccccCccC--------CCCCeEEECCCC-cCCEeCh-hhhccCCCCCEEECCCCc-CCeeCHHHhcCCC
Confidence 7888888888777665432 589999999997 6888744 335789999999999996 6655322 2238
Q ss_pred ccceeecccCccceecCCCcccCCCCccceeeeccccccccccc---CCCCCCCCCCCCCcccccccccccccceecccc
Q 039067 102 QLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA---DLSQNNENDQLGIPEQQLLWPLEKSLRVTVDHQ 178 (304)
Q Consensus 102 ~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~---~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~ 178 (304)
+|++|+++++ .++.++... +++|+.|+++++ +++.++. .....++.+.++.......-.
T Consensus 101 ~L~~L~Ls~n-~l~~l~~~~----~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------ 162 (330)
T 1xku_A 101 KLERLYLSKN-QLKELPEKM----PKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGI------------ 162 (330)
T ss_dssp TCCEEECCSS-CCSBCCSSC----CTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGB------------
T ss_pred CCCEEECCCC-cCCccChhh----cccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCc------------
Confidence 9999999987 577776543 489999999998 4776654 223334433333222110000
Q ss_pred ccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhh--hhcc----------Cc
Q 039067 179 LTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNV--FSEE----------GS 245 (304)
Q Consensus 179 l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~--~~l~----------~~ 245 (304)
....-..+++|+.|++++|....+ +...+++|+.|. ....+....|..+. ..+. ..
T Consensus 163 ------~~~~~~~l~~L~~L~l~~n~l~~l-----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 163 ------ENGAFQGMKKLSYIRIADTNITTI-----PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp ------CTTGGGGCTTCCEEECCSSCCCSC-----CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred ------ChhhccCCCCcCEEECCCCccccC-----CccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence 000112378999999999876433 223336777777 33334443333221 1111 01
Q ss_pred cccccccccccceeecccccCcccccCCCCcCCCCCCcccEEEEecCCCceecc
Q 039067 246 LEKHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCARNAESS 299 (304)
Q Consensus 246 ~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~~L~~l~ 299 (304)
....+..+++|++|+++++ +++.+... ...+++|++|++.+++ ++.++
T Consensus 232 ~~~~~~~l~~L~~L~L~~N-~l~~lp~~----l~~l~~L~~L~l~~N~-i~~~~ 279 (330)
T 1xku_A 232 DNGSLANTPHLRELHLNNN-KLVKVPGG----LADHKYIQVVYLHNNN-ISAIG 279 (330)
T ss_dssp CTTTGGGSTTCCEEECCSS-CCSSCCTT----TTTCSSCCEEECCSSC-CCCCC
T ss_pred ChhhccCCCCCCEEECCCC-cCccCChh----hccCCCcCEEECCCCc-CCccC
Confidence 1123556788888888887 56655332 3467889999988875 65554
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.43 E-value=1.6e-12 Score=118.29 Aligned_cols=122 Identities=15% Similarity=0.202 Sum_probs=87.7
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN-- 98 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~-- 98 (304)
.+++|++|+++++++..+....... +++|++|+++++ .+..+++ .....+++|++|++++|. +..++...
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~l~~~~~~ 138 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAY-----AHTIQKLYMGFN-AIRYLPP-HVFQNVPLLTVLVLERND-LSSLPRGIFH 138 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTT-----CTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred ccccCcEEECCCCcccccChhhccC-----CCCcCEEECCCC-CCCcCCH-HHhcCCCCCCEEECCCCc-cCcCCHHHhc
Confidence 4789999999999888776543333 899999999987 5777744 344688999999999985 77666543
Q ss_pred CCCccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCCCCCC
Q 039067 99 RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQNNEN 153 (304)
Q Consensus 99 ~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~l~~ 153 (304)
..++|++|+++++ .+..++... ...+++|+.|+++++ +++.++....+.++.
T Consensus 139 ~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~l~~L~~ 190 (390)
T 3o6n_A 139 NTPKLTTLSMSNN-NLERIEDDT-FQATTSLQNLQLSSN-RLTHVDLSLIPSLFH 190 (390)
T ss_dssp TCTTCCEEECCSS-CCCBCCTTT-TSSCTTCCEEECCSS-CCSBCCGGGCTTCSE
T ss_pred CCCCCcEEECCCC-ccCccChhh-ccCCCCCCEEECCCC-cCCccccccccccce
Confidence 2489999999887 566655432 245788999999887 466655544444433
No 22
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.42 E-value=7.7e-13 Score=117.15 Aligned_cols=213 Identities=16% Similarity=0.104 Sum_probs=138.5
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRAD 101 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~ 101 (304)
+++|++|+|++++++.+....... +++|++|++++| .+...++ ...+++|++|++++|. +..++.. +
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~Ls~n~-l~~l~~~---~ 99 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAP-----FTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNNY-VQELLVG---P 99 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTT-----CTTCCEEECTTS-CCEEEEE---ETTCTTCCEEECCSSE-EEEEEEC---T
T ss_pred CCCCCEEECcCCccCcCCHHHhhC-----CCcCCEEECCCC-cCCcchh---hhhcCCCCEEECcCCc-cccccCC---C
Confidence 679999999999877654322222 899999999987 5666644 4678999999999995 6655432 8
Q ss_pred ccceeecccCccceecCCCcccCCCCccceeeecccccccccccCC---CCCCCCCCCCCcccccccccccccceecccc
Q 039067 102 QLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADL---SQNNENDQLGIPEQQLLWPLEKSLRVTVDHQ 178 (304)
Q Consensus 102 ~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~---~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~ 178 (304)
+|++|+++++ ++.+++.. .+++|+.|+++++ +++.++... ...++.+.++.........
T Consensus 100 ~L~~L~l~~n-~l~~~~~~----~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------ 161 (317)
T 3o53_A 100 SIETLHAANN-NISRVSCS----RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNF------------ 161 (317)
T ss_dssp TCCEEECCSS-CCSEEEEC----CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEG------------
T ss_pred CcCEEECCCC-ccCCcCcc----ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccH------------
Confidence 8999999887 56666543 3788999999988 477664422 2223333332222111110
Q ss_pred ccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCccccccccccccc
Q 039067 179 LTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIK 257 (304)
Q Consensus 179 l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~ 257 (304)
......+++|+.|++++|....+. ....+++|+.|. ....+.. +|.. +..+++|+
T Consensus 162 -------~~~~~~l~~L~~L~L~~N~l~~~~----~~~~l~~L~~L~Ls~N~l~~-l~~~------------~~~l~~L~ 217 (317)
T 3o53_A 162 -------AELAASSDTLEHLNLQYNFIYDVK----GQVVFAKLKTLDLSSNKLAF-MGPE------------FQSAAGVT 217 (317)
T ss_dssp -------GGGGGGTTTCCEEECTTSCCCEEE----CCCCCTTCCEEECCSSCCCE-ECGG------------GGGGTTCS
T ss_pred -------HHHhhccCcCCEEECCCCcCcccc----cccccccCCEEECCCCcCCc-chhh------------hcccCccc
Confidence 001113578899999988764441 123477888887 3333443 3322 33678999
Q ss_pred eeecccccCcccccCCCCcCCCCCCcccEEEEecCCC
Q 039067 258 ELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCAR 294 (304)
Q Consensus 258 ~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~~ 294 (304)
+|+++++ .++.+... ...+++|+.|++.+++-
T Consensus 218 ~L~L~~N-~l~~l~~~----~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 218 WISLRNN-KLVLIEKA----LRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp EEECTTS-CCCEECTT----CCCCTTCCEEECTTCCC
T ss_pred EEECcCC-cccchhhH----hhcCCCCCEEEccCCCc
Confidence 9999987 67766432 24678999999988763
No 23
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.42 E-value=2.8e-12 Score=119.30 Aligned_cols=114 Identities=19% Similarity=0.100 Sum_probs=69.9
Q ss_pred cccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc
Q 039067 19 KVALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN 98 (304)
Q Consensus 19 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~ 98 (304)
...+++|++|++++++++.++. .. +++|++|++++| .++.+ + ...+++|++|++++|. +..++ -.
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~~---~~-----l~~L~~L~Ls~N-~l~~~-~---~~~l~~L~~L~L~~N~-l~~l~-~~ 124 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLDL---SQ-----NTNLTYLACDSN-KLTNL-D---VTPLTKLTYLNCDTNK-LTKLD-VS 124 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCCC---TT-----CTTCSEEECCSS-CCSCC-C---CTTCTTCCEEECCSSC-CSCCC-CT
T ss_pred hcccCCCCEEEccCCcCCeEcc---cc-----CCCCCEEECcCC-CCcee-e---cCCCCcCCEEECCCCc-CCeec-CC
Confidence 4458889999999887766531 11 788888888876 46665 2 3567888888888874 55543 22
Q ss_pred CCCccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCCCCC
Q 039067 99 RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQNNE 152 (304)
Q Consensus 99 ~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~l~ 152 (304)
..++|++|+++++ ++++++. ..+++|+.|++++|..+..++....+.++
T Consensus 125 ~l~~L~~L~l~~N-~l~~l~l----~~l~~L~~L~l~~n~~~~~~~~~~l~~L~ 173 (457)
T 3bz5_A 125 QNPLLTYLNCARN-TLTEIDV----SHNTQLTELDCHLNKKITKLDVTPQTQLT 173 (457)
T ss_dssp TCTTCCEEECTTS-CCSCCCC----TTCTTCCEEECTTCSCCCCCCCTTCTTCC
T ss_pred CCCcCCEEECCCC-ccceecc----ccCCcCCEEECCCCCcccccccccCCcCC
Confidence 2367777777665 4555432 24566666666666544444333333333
No 24
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.42 E-value=5.4e-12 Score=109.07 Aligned_cols=105 Identities=19% Similarity=0.187 Sum_probs=42.8
Q ss_pred CccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--CC
Q 039067 23 PNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--RA 100 (304)
Q Consensus 23 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~ 100 (304)
++|++|+|++++++.+....... +++|++|+++++ .+..++ ......+++|++|+++++. +..++... ..
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n-~l~~i~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 108 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHR-----LTKLRLLYLNDN-KLQTLP-AGIFKELKNLETLWVTDNK-LQALPIGVFDQL 108 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSS-----CTTCCEEECCSS-CCSCCC-TTTTSSCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred CCCCEEECcCCCCCeeCHHHhcC-----CCCCCEEECCCC-ccCeeC-hhhhcCCCCCCEEECCCCc-CCcCCHhHcccc
Confidence 34555555555444333221111 455555555543 344442 2222344555555555543 33332211 12
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeeccc
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHC 137 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C 137 (304)
++|++|+++++ .++.++... ...+++|+.|+++++
T Consensus 109 ~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 109 VNLAELRLDRN-QLKSLPPRV-FDSLTKLTYLSLGYN 143 (270)
T ss_dssp SSCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS
T ss_pred cCCCEEECCCC-ccCeeCHHH-hCcCcCCCEEECCCC
Confidence 44555555443 333333221 123444555555444
No 25
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=1.2e-12 Score=122.83 Aligned_cols=214 Identities=17% Similarity=0.118 Sum_probs=142.4
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCC
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRA 100 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 100 (304)
.+++|+.|+|+++++..+....... +++|++|++++| .+...++ +..+++|++|++++|. +..++..
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~~~--- 98 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAP-----FTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNNY-VQELLVG--- 98 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTT-----CTTCCEEECTTS-CCEEEEE---CTTCTTCCEEECCSSE-EEEEEEC---
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhC-----CCCCCEEEeeCC-CCCCCcc---cccCCCCCEEEecCCc-CCCCCCC---
Confidence 4679999999999887765433332 899999999997 5666644 4678999999999995 6666533
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeecccccccccccC---CCCCCCCCCCCCcccccccccccccceeccc
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAAD---LSQNNENDQLGIPEQQLLWPLEKSLRVTVDH 177 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~---~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 177 (304)
++|+.|+++++ .+..++.. .+++|+.|+++++ +++.++.. ..+.++.+.++........+
T Consensus 99 ~~L~~L~L~~N-~l~~~~~~----~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------- 161 (487)
T 3oja_A 99 PSIETLHAANN-NISRVSCS----RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNF----------- 161 (487)
T ss_dssp TTCCEEECCSS-CCCCEEEC----CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEEEG-----------
T ss_pred CCcCEEECcCC-cCCCCCcc----ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCcCh-----------
Confidence 88999999987 56666543 4789999999998 47665432 12233333333222211110
Q ss_pred cccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCcccccccccccc
Q 039067 178 QLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAMI 256 (304)
Q Consensus 178 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L 256 (304)
......+++|+.|++++|....+. +...+++|+.|. ....+....|. +..+++|
T Consensus 162 --------~~l~~~l~~L~~L~Ls~N~l~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~-------------~~~l~~L 216 (487)
T 3oja_A 162 --------AELAASSDTLEHLNLQYNFIYDVK----GQVVFAKLKTLDLSSNKLAFMGPE-------------FQSAAGV 216 (487)
T ss_dssp --------GGGGGGTTTCCEEECTTSCCCEEE----CCCCCTTCCEEECCSSCCCEECGG-------------GGGGTTC
T ss_pred --------HHHhhhCCcccEEecCCCcccccc----ccccCCCCCEEECCCCCCCCCCHh-------------HcCCCCc
Confidence 001113678999999988864441 233578888888 44444443221 3467899
Q ss_pred ceeecccccCcccccCCCCcCCCCCCcccEEEEecCCC
Q 039067 257 KELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCAR 294 (304)
Q Consensus 257 ~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~~ 294 (304)
+.|+++++ .+..++.. ...+++|+.|++.+++-
T Consensus 217 ~~L~Ls~N-~l~~lp~~----l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 217 TWISLRNN-KLVLIEKA----LRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp SEEECTTS-CCCEECTT----CCCCTTCCEEECTTCCB
T ss_pred cEEEecCC-cCcccchh----hccCCCCCEEEcCCCCC
Confidence 99999987 56666433 33678999999988763
No 26
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.41 E-value=1.6e-13 Score=122.06 Aligned_cols=112 Identities=12% Similarity=0.102 Sum_probs=67.7
Q ss_pred CccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCcccc-chhcc-cCC
Q 039067 23 PNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQ-EIISE-NRA 100 (304)
Q Consensus 23 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~-~l~~~-~~~ 100 (304)
++++.|++.++.+...+..... +++|++|++++|. +...........+++|++|++++|. +. ..+.. ...
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~------~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~ 141 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFS------PFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKN 141 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCC------CBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTC
T ss_pred ccceEEEcCCccccccchhhcc------CCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcC
Confidence 6778888877766554433221 6888888888774 4432112335677888888888875 43 22211 123
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeecccccccc
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKI 142 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~ 142 (304)
++|++|++++|..++..........+++|+.|++++|++++.
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence 788888888876665421111123577888888888865653
No 27
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.41 E-value=3.7e-12 Score=110.26 Aligned_cols=206 Identities=19% Similarity=0.161 Sum_probs=132.8
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc--cC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE--NR 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~ 99 (304)
.++|++|++++++++.+....... +++|++|++++| .+..+++ .....+++|++|+++++. +..++.. ..
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~-----l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 98 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFS-----FPELQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGNP-IQSLALGAFSG 98 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTT-----CTTCSEEECTTC-CCCEECT-TTTTTCTTCCEEECTTCC-CCEECTTTTTT
T ss_pred CCCccEEECCCCcccccCHhHhcc-----ccCCcEEECCCC-cCCccCH-HHccCCcCCCEEECCCCc-cCccChhhhcC
Confidence 467999999999888776543333 899999999998 6777744 334678999999999996 5555432 22
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCCCCCCCCCCCcccccccccccccceeccccc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQNNENDQLGIPEQQLLWPLEKSLRVTVDHQL 179 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~l 179 (304)
.++|++|+++++ ++..+.... ...+++|+.|+++++ +++.++.. .
T Consensus 99 l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~l~----------------~---------------- 143 (276)
T 2z62_A 99 LSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN-LIQSFKLP----------------E---------------- 143 (276)
T ss_dssp CTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCC----------------G----------------
T ss_pred CccccEEECCCC-CccccCchh-cccCCCCCEEECcCC-ccceecCc----------------h----------------
Confidence 389999999887 566555432 346889999999988 36543210 0
Q ss_pred cceeeeeccchhcccccEEEeccccccccccccCccccccCcc----ccc-ccCCCCcccchhhhhhccCcccccccccc
Q 039067 180 TSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLK----QLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLA 254 (304)
Q Consensus 180 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~----~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~ 254 (304)
.-..+++|+.|++++|....+.. .....+++|+ .+. ....+..+.+. .....
T Consensus 144 --------~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~l~l~L~ls~n~l~~~~~~-------------~~~~~ 200 (276)
T 2z62_A 144 --------YFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLLNLSLDLSLNPMNFIQPG-------------AFKEI 200 (276)
T ss_dssp --------GGGGCTTCCEEECCSSCCCEECG--GGGHHHHTCTTCCEEEECCSSCCCEECTT-------------SSCSC
T ss_pred --------hhccCCCCCEEECCCCCCCcCCH--HHhhhhhhccccceeeecCCCcccccCcc-------------ccCCC
Confidence 00136788899998887644321 1133445555 333 22223322221 11234
Q ss_pred ccceeecccccCcccccCCCCcCCCCCCcccEEEEe------cCCCcee
Q 039067 255 MIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVY------YCARNAE 297 (304)
Q Consensus 255 ~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~------~C~~L~~ 297 (304)
+|++|+++++ +++.+....+ ..+++|++|++. +|+.++.
T Consensus 201 ~L~~L~L~~n-~l~~~~~~~~---~~l~~L~~L~l~~N~~~c~c~~l~~ 245 (276)
T 2z62_A 201 RLKELALDTN-QLKSVPDGIF---DRLTSLQKIWLHTNPWDCSCPRIDY 245 (276)
T ss_dssp CEEEEECCSS-CCSCCCTTTT---TTCCSCCEEECCSSCBCCCTTTTHH
T ss_pred cccEEECCCC-ceeecCHhHh---cccccccEEEccCCcccccCCchHH
Confidence 7899999887 4766644432 367889999988 5666543
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.41 E-value=4.2e-12 Score=117.51 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=66.0
Q ss_pred ccCCccceeeecceeee-eecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccc-hhcc
Q 039067 20 VALPNLEALEISEINVN-KIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQE-IISE 97 (304)
Q Consensus 20 ~~~~~L~~L~L~~~~l~-~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~-l~~~ 97 (304)
..+++|++|+++++.+. .+....... +++|++|++++| .+..+.+ ..+..+++|++|++++|. +.. ++..
T Consensus 51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~-----l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~ 122 (455)
T 3v47_A 51 SRLQDLQFLKVEQQTPGLVIRNNTFRG-----LSSLIILKLDYN-QFLQLET-GAFNGLANLEVLTLTQCN-LDGAVLSG 122 (455)
T ss_dssp SSCTTCCEEECCCCSTTCEECTTTTTT-----CTTCCEEECTTC-TTCEECT-TTTTTCTTCCEEECTTSC-CBTHHHHS
T ss_pred ccCccccEEECcCCcccceECcccccc-----cccCCEEeCCCC-ccCccCh-hhccCcccCCEEeCCCCC-CCccccCc
Confidence 35788888888888553 343322222 788888888876 4555533 234567888888888875 443 2221
Q ss_pred ---cCCCccceeecccCccceecCCCcccCCCCccceeeeccc
Q 039067 98 ---NRADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHC 137 (304)
Q Consensus 98 ---~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C 137 (304)
...++|++|+++++ ++..+........+++|+.|+++++
T Consensus 123 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 123 NFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp STTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred ccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCC
Confidence 12367777777776 4554433222235677777777766
No 29
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.41 E-value=6.5e-12 Score=109.89 Aligned_cols=200 Identities=17% Similarity=0.086 Sum_probs=127.4
Q ss_pred cccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc
Q 039067 19 KVALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN 98 (304)
Q Consensus 19 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~ 98 (304)
...+++++++++.+++++.++... .++++.|+++++ .+..+++ ..+..+++|++|+++++. +..+....
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--------~~~l~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~ 74 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--------PKDTTILHLSEN-LLYTFSL-ATLMPYTRLTQLNLDRAE-LTKLQVDG 74 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--------CTTCCEEECTTS-CCSEEEG-GGGTTCTTCCEEECTTSC-CCEEECCS
T ss_pred ccccCCccEEECCCCCCCcCCCCC--------CCCCCEEEcCCC-cCCccCH-HHhhcCCCCCEEECCCCc-cCcccCCC
Confidence 345788899988888887765442 578899999886 5777643 345678999999998885 66665544
Q ss_pred CCCccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCCCCCCCCCCCcccccccccccccceecccc
Q 039067 99 RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQNNENDQLGIPEQQLLWPLEKSLRVTVDHQ 178 (304)
Q Consensus 99 ~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~ 178 (304)
..++|++|+++++ +++.++.. ...+++|+.|+++++ +++.++....
T Consensus 75 ~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~l~~N-~l~~l~~~~~------------------------------ 120 (290)
T 1p9a_G 75 TLPVLGTLDLSHN-QLQSLPLL--GQTLPALTVLDVSFN-RLTSLPLGAL------------------------------ 120 (290)
T ss_dssp CCTTCCEEECCSS-CCSSCCCC--TTTCTTCCEEECCSS-CCCCCCSSTT------------------------------
T ss_pred CCCcCCEEECCCC-cCCcCchh--hccCCCCCEEECCCC-cCcccCHHHH------------------------------
Confidence 4588999999887 66766653 246788999999887 4776653211
Q ss_pred ccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCccccccccccccc
Q 039067 179 LTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIK 257 (304)
Q Consensus 179 l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~ 257 (304)
..+++|++|++++|....+.. ..+..+++|+.|. ....+.. +|... +..+++|+
T Consensus 121 -----------~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~-l~~~~-----------~~~l~~L~ 175 (290)
T 1p9a_G 121 -----------RGLGELQELYLKGNELKTLPP--GLLTPTPKLEKLSLANNNLTE-LPAGL-----------LNGLENLD 175 (290)
T ss_dssp -----------TTCTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECTTSCCSC-CCTTT-----------TTTCTTCC
T ss_pred -----------cCCCCCCEEECCCCCCCccCh--hhcccccCCCEEECCCCcCCc-cCHHH-----------hcCcCCCC
Confidence 125677777777776543311 1134456666666 3333332 33211 23567777
Q ss_pred eeecccccCcccccCCCCcCCCCCCcccEEEEecCC
Q 039067 258 ELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCA 293 (304)
Q Consensus 258 ~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~ 293 (304)
.|+++++ +++.+... ....++|+.|++.+.|
T Consensus 176 ~L~L~~N-~l~~ip~~----~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 176 TLLLQEN-SLYTIPKG----FFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EEECCSS-CCCCCCTT----TTTTCCCSEEECCSCC
T ss_pred EEECCCC-cCCccChh----hcccccCCeEEeCCCC
Confidence 7777776 46655433 2345677777776543
No 30
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.39 E-value=6.2e-12 Score=112.85 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=78.4
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--C
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--R 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~ 99 (304)
.+++++|+|++++++.++...+.+ +++|++|+|+++.-+..+ +...+..+++++++.+.++.++..++... .
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~-----l~~L~~L~Ls~N~i~~~i-~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~ 102 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSG-----FGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNLLYINPEAFQN 102 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTT-----CTTCCEEEEECCTTCCEE-CTTSBCSCTTCCEEEEEEETTCCEECTTSBCC
T ss_pred CCCCCEEEccCCcCCCcCHHHHcC-----CCCCCEEECcCCCCCCcc-ChhHhhcchhhhhhhcccCCcccccCchhhhh
Confidence 468888888888888877654443 788888888887544445 33444667788877776666777775443 2
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeeccccccccccc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 145 (304)
.++|+.|+++++ +++.++.... .....+..+.+.++.+++.++.
T Consensus 103 l~~L~~L~l~~n-~l~~~~~~~~-~~~~~l~~l~l~~~~~i~~l~~ 146 (350)
T 4ay9_X 103 LPNLQYLLISNT-GIKHLPDVHK-IHSLQKVLLDIQDNINIHTIER 146 (350)
T ss_dssp CTTCCEEEEEEE-CCSSCCCCTT-CCBSSCEEEEEESCTTCCEECT
T ss_pred cccccccccccc-ccccCCchhh-cccchhhhhhhccccccccccc
Confidence 378888888776 5666554332 2345667777777777776654
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.39 E-value=1.1e-11 Score=119.02 Aligned_cols=107 Identities=15% Similarity=0.182 Sum_probs=52.1
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc--cC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE--NR 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~ 99 (304)
+++|++|++++++++.++..... +++|++|++++| .+..+++ .....+++|++|++++|.....++.. ..
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~------l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVG------LSTLKKLVLSAN-KFENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCS------CTTCCEEECTTC-CCSBGGG-GCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred ccCCCEEeccCCccCCCChhhcc------cccCCEEECccC-CcCcCch-hhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 55666666666655544333211 566666666665 3444422 22345566666666666422222221 11
Q ss_pred CCccceeecccCccceecCC-CcccCCCCccceeeeccc
Q 039067 100 ADQLTTLGLQYLPKLRCLYP-GMHTSEWPALESLLVRHC 137 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~-~~~~~~l~~L~~L~l~~C 137 (304)
.++|++|+++++ .+..... ......+++|+.|++++|
T Consensus 349 l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 349 LENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp CTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred cCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCC
Confidence 256666666655 3333320 011234566666666665
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.38 E-value=9e-12 Score=116.04 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=45.0
Q ss_pred cccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc
Q 039067 19 KVALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN 98 (304)
Q Consensus 19 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~ 98 (304)
...+++|++|++++|+++.+.. ... +++|++|++++| .+..+++ ...+++|++|++++|. +..++.-.
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~--~~~-----l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~ 131 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP--LKN-----LTKLVDILMNNN-QIADITP---LANLTNLTGLTLFNNQ-ITDIDPLK 131 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTT-----CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCGGGT
T ss_pred hhhhcCCCEEECCCCccCCchh--hhc-----cccCCEEECCCC-ccccChh---hcCCCCCCEEECCCCC-CCCChHHc
Confidence 3446777777777776655432 111 566666666665 4555432 3456666666666663 44443322
Q ss_pred CCCccceeecccC
Q 039067 99 RADQLTTLGLQYL 111 (304)
Q Consensus 99 ~~~~L~~L~L~~c 111 (304)
..++|++|+++++
T Consensus 132 ~l~~L~~L~l~~n 144 (466)
T 1o6v_A 132 NLTNLNRLELSSN 144 (466)
T ss_dssp TCTTCSEEEEEEE
T ss_pred CCCCCCEEECCCC
Confidence 2356666665554
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.37 E-value=5e-12 Score=121.49 Aligned_cols=121 Identities=15% Similarity=0.200 Sum_probs=88.4
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN-- 98 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~-- 98 (304)
.+++|++|+|+++.+..+....... +++|++|++++| .+..+++ ..++.+++|++|++++|. +..++...
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~l~~~~~~ 144 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAY-----AHTIQKLYMGFN-AIRYLPP-HVFQNVPLLTVLVLERND-LSSLPRGIFH 144 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTT-----CTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred cCCCCcEEECCCCCCCCCChHHhcC-----CCCCCEEECCCC-cCCCCCH-HHHcCCCCCCEEEeeCCC-CCCCCHHHhc
Confidence 4789999999999888776543333 899999999987 5777744 345788999999999995 77666543
Q ss_pred CCCccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCCCCC
Q 039067 99 RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQNNE 152 (304)
Q Consensus 99 ~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~l~ 152 (304)
..++|++|+++++ .+..++... ...+++|+.|+++++ .++.++....+.+.
T Consensus 145 ~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~ 195 (597)
T 3oja_B 145 NTPKLTTLSMSNN-NLERIEDDT-FQATTSLQNLQLSSN-RLTHVDLSLIPSLF 195 (597)
T ss_dssp TCTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECTTS-CCSBCCGGGCTTCS
T ss_pred cCCCCCEEEeeCC-cCCCCChhh-hhcCCcCcEEECcCC-CCCCcChhhhhhhh
Confidence 3489999999887 566665542 246788999999887 46666554444433
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.37 E-value=2.9e-11 Score=107.46 Aligned_cols=247 Identities=14% Similarity=0.089 Sum_probs=135.0
Q ss_pred cccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc-
Q 039067 19 KVALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE- 97 (304)
Q Consensus 19 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~- 97 (304)
...+++|++|++++++++.+....... +++|++|+++++ .++.++.. . +++|++|+++++. +..++..
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~~l~~~-~---~~~L~~L~l~~n~-i~~~~~~~ 142 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSP-----LRKLQKLYISKN-HLVEIPPN-L---PSSLVELRIHDNR-IRKVPKGV 142 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTT-----CTTCCEEECCSS-CCCSCCSS-C---CTTCCEEECCSSC-CCCCCSGG
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhC-----cCCCCEEECCCC-cCCccCcc-c---cccCCEEECCCCc-cCccCHhH
Confidence 345899999999999887764333222 799999999887 67777432 2 2789999998885 5555433
Q ss_pred -cCCCccceeecccCcccee--cCCCcccCCCCccceeeecccccccccccCCCCCCCCCCCCCccccccc-----cccc
Q 039067 98 -NRADQLTTLGLQYLPKLRC--LYPGMHTSEWPALESLLVRHCDKLKIFAADLSQNNENDQLGIPEQQLLW-----PLEK 169 (304)
Q Consensus 98 -~~~~~L~~L~L~~c~~L~~--~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~-----~~~~ 169 (304)
...++|++|+++++ .++. ...... ..+ +|+.|+++++ +++.+|......++.+.++........ ....
T Consensus 143 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~-~~l-~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~ 218 (332)
T 2ft3_A 143 FSGLRNMNCIEMGGN-PLENSGFEPGAF-DGL-KLNYLRISEA-KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSK 218 (332)
T ss_dssp GSSCSSCCEEECCSC-CCBGGGSCTTSS-CSC-CCSCCBCCSS-BCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTT
T ss_pred hCCCccCCEEECCCC-ccccCCCCcccc-cCC-ccCEEECcCC-CCCccCccccCCCCEEECCCCcCCccCHHHhcCCCC
Confidence 22378888888876 3432 211111 123 7777777777 366666544444554444333222111 0000
Q ss_pred ccceecc-ccccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCccc
Q 039067 170 SLRVTVD-HQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLE 247 (304)
Q Consensus 170 ~l~~~~~-~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~ 247 (304)
.-.+... ..++.... ..-..+++|++|++++|....+. .....+++|+.|. ....+..+.+..+.. .
T Consensus 219 L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~lp---~~l~~l~~L~~L~l~~N~l~~~~~~~~~~------~ 287 (332)
T 2ft3_A 219 LYRLGLGHNQIRMIEN--GSLSFLPTLRELHLDNNKLSRVP---AGLPDLKLLQVVYLHTNNITKVGVNDFCP------V 287 (332)
T ss_dssp CSCCBCCSSCCCCCCT--TGGGGCTTCCEEECCSSCCCBCC---TTGGGCTTCCEEECCSSCCCBCCTTSSSC------S
T ss_pred CCEEECCCCcCCcCCh--hHhhCCCCCCEEECCCCcCeecC---hhhhcCccCCEEECCCCCCCccChhHccc------c
Confidence 0000000 01111110 01123789999999999765432 1245678888887 333344322221110 0
Q ss_pred cccccccccceeecccccCcc-cccCCCCcCCCCCCcccEEEEecCCC
Q 039067 248 KHVGKLAMIKELKLYRPYHLK-QLGKQDSKLGPIFQYLEILEVYYCAR 294 (304)
Q Consensus 248 ~~~~~l~~L~~L~l~~c~~L~-~i~~~~~~~~~~~~~L~~L~i~~C~~ 294 (304)
.....+++|+.|++.+++-.. .+.... ...+++|+.+++.++.+
T Consensus 288 ~~~~~~~~l~~L~l~~N~~~~~~~~~~~---~~~l~~L~~l~l~~n~~ 332 (332)
T 2ft3_A 288 GFGVKRAYYNGISLFNNPVPYWEVQPAT---FRCVTDRLAIQFGNYKK 332 (332)
T ss_dssp SCCSSSCCBSEEECCSSSSCGGGSCGGG---GTTBCCSTTEEC-----
T ss_pred ccccccccccceEeecCcccccccCccc---ccccchhhhhhcccccC
Confidence 001126789999999987321 222222 34788999999988754
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.35 E-value=1e-11 Score=115.62 Aligned_cols=116 Identities=18% Similarity=0.129 Sum_probs=81.3
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCC
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRA 100 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 100 (304)
.+++|++|++++++++.+. +. .. +++|++|++++| .++.+ + ...+++|++|++++|. +..+. -...
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~-~l-~~-----l~~L~~L~Ls~n-~l~~~-~---~~~l~~L~~L~Ls~N~-l~~~~-~~~l 105 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT-GI-EK-----LTGLTKLICTSN-NITTL-D---LSQNTNLTYLACDSNK-LTNLD-VTPL 105 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT-TG-GG-----CTTCSEEECCSS-CCSCC-C---CTTCTTCSEEECCSSC-CSCCC-CTTC
T ss_pred HcCCCCEEEccCCCcccCh-hh-cc-----cCCCCEEEccCC-cCCeE-c---cccCCCCCEEECcCCC-Cceee-cCCC
Confidence 4788999999988776653 11 11 788999999887 57776 2 3578899999998886 66553 2233
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCCCCCCCCC
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQNNENDQL 156 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~l~~~~~ 156 (304)
++|++|+++++ ++++++. ..+++|+.|+++++ +++.++....+.++.+.+
T Consensus 106 ~~L~~L~L~~N-~l~~l~~----~~l~~L~~L~l~~N-~l~~l~l~~l~~L~~L~l 155 (457)
T 3bz5_A 106 TKLTYLNCDTN-KLTKLDV----SQNPLLTYLNCARN-TLTEIDVSHNTQLTELDC 155 (457)
T ss_dssp TTCCEEECCSS-CCSCCCC----TTCTTCCEEECTTS-CCSCCCCTTCTTCCEEEC
T ss_pred CcCCEEECCCC-cCCeecC----CCCCcCCEEECCCC-ccceeccccCCcCCEEEC
Confidence 88999999887 6766652 35788899988887 477666555545544443
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.35 E-value=1e-11 Score=114.96 Aligned_cols=113 Identities=18% Similarity=0.178 Sum_probs=80.1
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchh-cc-cC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEII-SE-NR 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~-~~-~~ 99 (304)
.++|++|+|++++++.+....... +++|++|++++|.-...+ +...+..+++|++|++++|. +..+. .. ..
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~L~~n~~~~~i-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 101 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSR-----LQDLQFLKVEQQTPGLVI-RNNTFRGLSSLIILKLDYNQ-FLQLETGAFNG 101 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSS-----CTTCCEEECCCCSTTCEE-CTTTTTTCTTCCEEECTTCT-TCEECTTTTTT
T ss_pred CCccCEEEecCCccCcCChhHhcc-----CccccEEECcCCcccceE-CcccccccccCCEEeCCCCc-cCccChhhccC
Confidence 488999999999888764443332 899999999998543355 33445789999999999996 55443 22 22
Q ss_pred CCccceeecccCcccee-cCCCcccCCCCccceeeeccccccccc
Q 039067 100 ADQLTTLGLQYLPKLRC-LYPGMHTSEWPALESLLVRHCDKLKIF 143 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~-~~~~~~~~~l~~L~~L~l~~C~~L~~l 143 (304)
.++|++|+++++ ++++ .+.......+++|+.|+++++. ++..
T Consensus 102 l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~ 144 (455)
T 3v47_A 102 LANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKI 144 (455)
T ss_dssp CTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSB-CCSC
T ss_pred cccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCc-cCcc
Confidence 389999999998 4543 2222123468999999999984 6655
No 37
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.35 E-value=2.5e-11 Score=113.04 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=22.1
Q ss_pred cccccccceeecccccCcccccCCCCcCCCCCCcccEEEEecCC
Q 039067 250 VGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCA 293 (304)
Q Consensus 250 ~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~ 293 (304)
+..+++|+.|+++++. +..+.. ...+++|++|++.+|+
T Consensus 349 l~~l~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQ-ISDLTP-----LANLTRITQLGLNDQA 386 (466)
T ss_dssp GTTCTTCCEEECCSSC-CCBCGG-----GTTCTTCCEEECCCEE
T ss_pred hccCCCCCEEeCCCCc-cCccch-----hhcCCCCCEEeccCCc
Confidence 3456667777777663 332211 2366777777777764
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.34 E-value=2.1e-11 Score=106.04 Aligned_cols=116 Identities=20% Similarity=0.167 Sum_probs=87.3
Q ss_pred ccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc--
Q 039067 20 VALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE-- 97 (304)
Q Consensus 20 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~-- 97 (304)
..+++|++|++++++++.+....... +++|++|+++++..+..+++ .....+++|++|++++|. +..+...
T Consensus 53 ~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 125 (285)
T 1ozn_A 53 RACRNLTILWLHSNVLARIDAAAFTG-----LALLEQLDLSDNAQLRSVDP-ATFHGLGRLHTLHLDRCG-LQELGPGLF 125 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTT-----CTTCCEEECCSCTTCCCCCT-TTTTTCTTCCEEECTTSC-CCCCCTTTT
T ss_pred ccCCCCCEEECCCCccceeCHhhcCC-----ccCCCEEeCCCCCCccccCH-HHhcCCcCCCEEECCCCc-CCEECHhHh
Confidence 45899999999999887764433332 89999999999866887744 345689999999999996 5555332
Q ss_pred cCCCccceeecccCccceecCCCcccCCCCccceeeeccccccccccc
Q 039067 98 NRADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 98 ~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 145 (304)
...++|++|+++++ .++.++... ...+++|+.|+++++ +++.++.
T Consensus 126 ~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~ 170 (285)
T 1ozn_A 126 RGLAALQYLYLQDN-ALQALPDDT-FRDLGNLTHLFLHGN-RISSVPE 170 (285)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCEECT
T ss_pred hCCcCCCEEECCCC-cccccCHhH-hccCCCccEEECCCC-cccccCH
Confidence 22389999999987 566666542 246899999999998 5776653
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.34 E-value=1.9e-11 Score=117.21 Aligned_cols=238 Identities=13% Similarity=0.022 Sum_probs=123.7
Q ss_pred cccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccch---h
Q 039067 19 KVALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEI---I 95 (304)
Q Consensus 19 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l---~ 95 (304)
...+++|++|++++|++..++.- . +++|++|++++|..+... + ...+++|++|++++|. +..+ +
T Consensus 303 l~~~~~L~~L~l~~n~l~~lp~~---~-----l~~L~~L~l~~n~~~~~~-~---~~~l~~L~~L~ls~n~-l~~~~~~~ 369 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQLKQFPTL---D-----LPFLKSLTLTMNKGSISF-K---KVALPSLSYLDLSRNA-LSFSGCCS 369 (606)
T ss_dssp CCTTCCCSEEEEESCCCSSCCCC---C-----CSSCCEEEEESCSSCEEC-C---CCCCTTCCEEECCSSC-EEEEEECC
T ss_pred ccccccCCEEEcccccCcccccC---C-----CCccceeeccCCcCccch-h---hccCCCCCEEECcCCc-cCCCcchh
Confidence 34577899999999976555421 2 788888888887554433 1 2467778888887774 4332 1
Q ss_pred cc-cCCCccceeecccCccceecCCCcccCCCCccceeeeccccccccccc-C---CCCCCCCCCCCCcccccccc----
Q 039067 96 SE-NRADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA-D---LSQNNENDQLGIPEQQLLWP---- 166 (304)
Q Consensus 96 ~~-~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~-~---~~~~l~~~~~~~~~~~~l~~---- 166 (304)
.. ...++|++|+++++ .+..++. ....+++|+.|++++|. ++..+. . ..+.++.+.++........+
T Consensus 370 ~~~~~~~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 445 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFN-GAIIMSA--NFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445 (606)
T ss_dssp HHHHCCSCCCEEECCSC-SEEEECC--CCTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred hhhccCCcccEeECCCC-ccccchh--hccCCCCCCeeECCCCc-cCCccChhhhhccccCCEEECcCCCCCccchhhhc
Confidence 11 12367777777776 3555552 22356777777777763 443322 1 22233333333322211110
Q ss_pred cccccc-eec-cccccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhcc
Q 039067 167 LEKSLR-VTV-DHQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEE 243 (304)
Q Consensus 167 ~~~~l~-~~~-~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~ 243 (304)
.-..++ +.. +..+.... ..+.-..+++|+.|++++|....+.. .....+++|+.|. ....+....|..
T Consensus 446 ~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~------ 516 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNT-LSNVFANTTNLTFLDLSKCQLEQISW--GVFDTLHRLQLLNMSHNNLLFLDSSH------ 516 (606)
T ss_dssp TCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECCSSCCSCEEGGG------
T ss_pred CCCCCCEEECCCCcCCCcc-hHHhhccCCCCCEEECCCCcCCccCh--hhhcccccCCEEECCCCcCCCcCHHH------
Confidence 000000 000 00000000 00011125677777777776533321 1134556666666 333344433432
Q ss_pred CccccccccccccceeecccccCcccccCCCCcCCCCCC-cccEEEEecCC
Q 039067 244 GSLEKHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQ-YLEILEVYYCA 293 (304)
Q Consensus 244 ~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~-~L~~L~i~~C~ 293 (304)
+..+++|++|+++++ +++.++.. + ..++ +|++|++.++|
T Consensus 517 ------~~~l~~L~~L~l~~N-~l~~~p~~-~---~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 517 ------YNQLYSLSTLDCSFN-RIETSKGI-L---QHFPKSLAFFNLTNNS 556 (606)
T ss_dssp ------TTTCTTCCEEECTTS-CCCCEESC-G---GGSCTTCCEEECCSCC
T ss_pred ------ccCCCcCCEEECCCC-cCcccCHh-H---hhhcccCcEEEccCCC
Confidence 346788888888887 47766544 2 2455 58888888765
No 40
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.32 E-value=3e-11 Score=116.32 Aligned_cols=99 Identities=21% Similarity=0.120 Sum_probs=73.4
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRAD 101 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~ 101 (304)
.++|+.|+|++|+++.++.. +++|++|++++| +++.++. .+++|++|++++|. +..++. ..+
T Consensus 60 ~~~L~~L~L~~N~l~~lp~~---------l~~L~~L~Ls~N-~l~~lp~-----~l~~L~~L~Ls~N~-l~~l~~--~l~ 121 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPAL---------PPELRTLEVSGN-QLTSLPV-----LPPGLLELSIFSNP-LTHLPA--LPS 121 (622)
T ss_dssp CTTCSEEEECSCCCSCCCCC---------CTTCCEEEECSC-CCSCCCC-----CCTTCCEEEECSCC-CCCCCC--CCT
T ss_pred CCCCcEEEecCCCCCCCCCc---------CCCCCEEEcCCC-cCCcCCC-----CCCCCCEEECcCCc-CCCCCC--CCC
Confidence 37889999998887766552 788999999887 5777743 56889999998885 666654 337
Q ss_pred ccceeecccCccceecCCCcccCCCCccceeeeccccccccccc
Q 039067 102 QLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 102 ~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 145 (304)
+|+.|+++++ +++.++. .+++|+.|++++| +++.+|.
T Consensus 122 ~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~l~~ 158 (622)
T 3g06_A 122 GLCKLWIFGN-QLTSLPV-----LPPGLQELSVSDN-QLASLPA 158 (622)
T ss_dssp TCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC
T ss_pred CcCEEECCCC-CCCcCCC-----CCCCCCEEECcCC-cCCCcCC
Confidence 8888888877 5666654 2488888888888 5776653
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.31 E-value=2.5e-11 Score=115.01 Aligned_cols=114 Identities=20% Similarity=0.201 Sum_probs=84.6
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc--cC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE--NR 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~ 99 (304)
+++|++|++++++++.+....... +++|++|+++++ ++..+++ ..+..+++|++|++++|. +..++.. ..
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 96 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRA-----CANLQVLILKSS-RINTIEG-DAFYSLGSLEHLDLSDNH-LSSLSSSWFGP 96 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSS-----CTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTSC-CCSCCHHHHTT
T ss_pred CCCccEEECcCCccCccChhhhhc-----CCcccEEECCCC-CcCccCh-hhccccccCCEEECCCCc-cCccCHHHhcc
Confidence 478999999999888775443333 899999999997 6777744 334689999999999996 6555432 23
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeecccccccccc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFA 144 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 144 (304)
.++|++|+++++ .++.+........+++|+.|+++++..+..++
T Consensus 97 l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 97 LSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp CTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccC
Confidence 489999999988 56644322233568999999999986566555
No 42
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.31 E-value=4.2e-11 Score=103.38 Aligned_cols=198 Identities=20% Similarity=0.165 Sum_probs=122.5
Q ss_pred CccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--CC
Q 039067 23 PNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--RA 100 (304)
Q Consensus 23 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~ 100 (304)
.+.+.+++++.+++.++... .++|++|+++++ ++..+++ ..+..+++|++|+++++. +..++... ..
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~--------~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l 84 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNI--------PADTKKLDLQSN-KLSSLPS-KAFHRLTKLRLLYLNDNK-LQTLPAGIFKEL 84 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCC--------CTTCSEEECCSS-CCSCCCT-TSSSSCTTCCEEECCSSC-CSCCCTTTTSSC
T ss_pred CCCCEEEccCCCCCccCCCC--------CCCCCEEECcCC-CCCeeCH-HHhcCCCCCCEEECCCCc-cCeeChhhhcCC
Confidence 35778888888887765432 578999999987 6777743 335688999999999985 66666543 23
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCCCCCCCCCCCcccccccccccccceecccccc
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQNNENDQLGIPEQQLLWPLEKSLRVTVDHQLT 180 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~l~ 180 (304)
++|++|+++++ +++.++... ...+++|+.|+++++ +++.++....
T Consensus 85 ~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~-------------------------------- 129 (270)
T 2o6q_A 85 KNLETLWVTDN-KLQALPIGV-FDQLVNLAELRLDRN-QLKSLPPRVF-------------------------------- 129 (270)
T ss_dssp TTCCEEECCSS-CCCCCCTTT-TTTCSSCCEEECCSS-CCCCCCTTTT--------------------------------
T ss_pred CCCCEEECCCC-cCCcCCHhH-cccccCCCEEECCCC-ccCeeCHHHh--------------------------------
Confidence 89999999987 577766543 236899999999998 4766653211
Q ss_pred ceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCcccccccccccccee
Q 039067 181 SLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIKEL 259 (304)
Q Consensus 181 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~~L 259 (304)
..+++|+.|++++|....+.. ..+..+++|+.|. ....+..+.+. .+..+++|++|
T Consensus 130 ---------~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L 186 (270)
T 2o6q_A 130 ---------DSLTKLTYLSLGYNELQSLPK--GVFDKLTSLKELRLYNNQLKRVPEG------------AFDKLTELKTL 186 (270)
T ss_dssp ---------TTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTT------------TTTTCTTCCEE
T ss_pred ---------CcCcCCCEEECCCCcCCccCH--hHccCCcccceeEecCCcCcEeChh------------HhccCCCcCEE
Confidence 124566666666665433211 1123455555555 22222222111 12245666666
Q ss_pred ecccccCcccccCCCCcCCCCCCcccEEEEecCC
Q 039067 260 KLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCA 293 (304)
Q Consensus 260 ~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~ 293 (304)
+++++ +++.+....+. .+++|+.|++.++|
T Consensus 187 ~L~~N-~l~~~~~~~~~---~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 187 KLDNN-QLKRVPEGAFD---SLEKLKMLQLQENP 216 (270)
T ss_dssp ECCSS-CCSCCCTTTTT---TCTTCCEEECCSSC
T ss_pred ECCCC-cCCcCCHHHhc---cccCCCEEEecCCC
Confidence 66665 45555444333 56666666665544
No 43
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.31 E-value=3.2e-11 Score=116.17 Aligned_cols=214 Identities=20% Similarity=0.142 Sum_probs=132.2
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCC
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRA 100 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 100 (304)
.+++|++|+|++|+++.++.. +++|++|+++++ .++.++. .+++|++|++++|. +..++.. .
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~~---------l~~L~~L~Ls~N-~l~~l~~-----~l~~L~~L~L~~N~-l~~lp~~--l 140 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPVL---------PPGLLELSIFSN-PLTHLPA-----LPSGLCKLWIFGNQ-LTSLPVL--P 140 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCCC---------CTTCCEEEECSC-CCCCCCC-----CCTTCCEEECCSSC-CSCCCCC--C
T ss_pred cCCCCCEEEcCCCcCCcCCCC---------CCCCCEEECcCC-cCCCCCC-----CCCCcCEEECCCCC-CCcCCCC--C
Confidence 478999999999988776552 899999999887 6777743 46889999998885 6666543 2
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCCCCCCCCCCCcccccccccccccc-ee-cccc
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQNNENDQLGIPEQQLLWPLEKSLR-VT-VDHQ 178 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~-~~-~~~~ 178 (304)
++|++|+++++ ++.+++. .+++|+.|.+.++ +++.+| ...+.++.+.++......+......++ +. ....
T Consensus 141 ~~L~~L~Ls~N-~l~~l~~-----~~~~L~~L~L~~N-~l~~l~-~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~ 212 (622)
T 3g06_A 141 PGLQELSVSDN-QLASLPA-----LPSELCKLWAYNN-QLTSLP-MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNR 212 (622)
T ss_dssp TTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCC-CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CCCCEEECcCC-cCCCcCC-----ccCCCCEEECCCC-CCCCCc-ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCc
Confidence 78888888887 5666543 2467777777776 466665 223334444333332222111000110 00 0011
Q ss_pred ccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCccccccccccccc
Q 039067 179 LTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIK 257 (304)
Q Consensus 179 l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~ 257 (304)
++.++ ..+++|+.|++++|....+ ...+++|+.|. ..+.+. .+|. .+++|+
T Consensus 213 l~~l~------~~~~~L~~L~Ls~N~L~~l------p~~l~~L~~L~Ls~N~L~-~lp~---------------~~~~L~ 264 (622)
T 3g06_A 213 LTSLP------ALPSGLKELIVSGNRLTSL------PVLPSELKELMVSGNRLT-SLPM---------------LPSGLL 264 (622)
T ss_dssp CSSCC------CCCTTCCEEECCSSCCSCC------CCCCTTCCEEECCSSCCS-CCCC---------------CCTTCC
T ss_pred ccccC------CCCCCCCEEEccCCccCcC------CCCCCcCcEEECCCCCCC-cCCc---------------ccccCc
Confidence 11111 1246788888887765432 14557777777 333333 2332 467899
Q ss_pred eeecccccCcccccCCCCcCCCCCCcccEEEEecCC
Q 039067 258 ELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCA 293 (304)
Q Consensus 258 ~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~ 293 (304)
.|+++++ +|+.++. ....+++|+.|++.+++
T Consensus 265 ~L~Ls~N-~L~~lp~----~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 265 SLSVYRN-QLTRLPE----SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EEECCSS-CCCSCCG----GGGGSCTTCEEECCSCC
T ss_pred EEeCCCC-CCCcCCH----HHhhccccCEEEecCCC
Confidence 9999988 6776633 23478999999999987
No 44
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.31 E-value=4.4e-11 Score=114.75 Aligned_cols=114 Identities=24% Similarity=0.300 Sum_probs=75.6
Q ss_pred cccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchh---
Q 039067 19 KVALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEII--- 95 (304)
Q Consensus 19 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~--- 95 (304)
...+++|++|+++++++..+....... +++|++|++++|.....+ +......+++|++|++++|. +..+.
T Consensus 297 l~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 369 (606)
T 3t6q_A 297 LVGLSTLKKLVLSANKFENLCQISASN-----FPSLTHLSIKGNTKRLEL-GTGCLENLENLRELDLSHDD-IETSDCCN 369 (606)
T ss_dssp CCSCTTCCEEECTTCCCSBGGGGCGGG-----CTTCSEEECCSCSSCCBC-CSSTTTTCTTCCEEECCSSC-CCEEEEST
T ss_pred hcccccCCEEECccCCcCcCchhhhhc-----cCcCCEEECCCCCccccc-chhhhhccCcCCEEECCCCc-cccccCcc
Confidence 345899999999999777653332222 789999999988543345 33345678899999998886 44332
Q ss_pred cc-cCCCccceeecccCccceecCCCcccCCCCccceeeecccccccc
Q 039067 96 SE-NRADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKI 142 (304)
Q Consensus 96 ~~-~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~ 142 (304)
.. ...++|++|+++++ ++.++.... ...+++|+.|+++++. ++.
T Consensus 370 ~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~ 414 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYN-EPLSLKTEA-FKECPQLELLDLAFTR-LKV 414 (606)
T ss_dssp TTTTTCTTCCEEECCSC-SCEEECTTT-TTTCTTCSEEECTTCC-EEC
T ss_pred hhcccCCCCCEEECCCC-cCCcCCHHH-hcCCccCCeEECCCCc-CCC
Confidence 11 22378888888887 455554332 2357888888888874 443
No 45
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.30 E-value=2e-11 Score=118.24 Aligned_cols=237 Identities=13% Similarity=0.085 Sum_probs=125.1
Q ss_pred cccCCccceeeecceeee-eecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCc-ccEEeeccCccccchhc
Q 039067 19 KVALPNLEALEISEINVN-KIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQ-LQHLDIRHCEDLQEIIS 96 (304)
Q Consensus 19 ~~~~~~L~~L~L~~~~l~-~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~-L~~L~i~~c~~l~~l~~ 96 (304)
...+++|++|+++++++. .++ .... +++|++|+++++ .+..++. . +..+++ |++|++++|. +..++.
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~------l~~L~~L~L~~N-~l~~lp~-~-l~~l~~~L~~L~Ls~N~-l~~lp~ 394 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGS------EIKLASLNLAYN-QITEIPA-N-FCGFTEQVENLSFAHNK-LKYIPN 394 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEE------EEEESEEECCSS-EEEECCT-T-SEEECTTCCEEECCSSC-CSSCCS
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCC------CCCCCEEECCCC-ccccccH-h-hhhhcccCcEEEccCCc-Ccccch
Confidence 445888999999988777 555 2111 678888888886 5666532 2 456777 8888888886 555554
Q ss_pred ccCC---CccceeecccCccceecCCC------cccCCCCccceeeecccccccccccC---CCCCCCCCCCCCcccccc
Q 039067 97 ENRA---DQLTTLGLQYLPKLRCLYPG------MHTSEWPALESLLVRHCDKLKIFAAD---LSQNNENDQLGIPEQQLL 164 (304)
Q Consensus 97 ~~~~---~~L~~L~L~~c~~L~~~~~~------~~~~~l~~L~~L~l~~C~~L~~l~~~---~~~~l~~~~~~~~~~~~l 164 (304)
.... ++|+.|+++++ .+.+.... .....+++|+.|+++++ +++.+|.. ..+.++.+.++......+
T Consensus 395 ~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp CCCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred hhhhcccCccCEEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence 3222 36888888776 33332111 01114567777777777 46666542 123344444333322211
Q ss_pred ccc--cc---------ccc-eec-cccccceeeeeccch--hcccccEEEeccccccccccccCccccccCccccc--cc
Q 039067 165 WPL--EK---------SLR-VTV-DHQLTSLVIMIDDDQ--IVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE--IV 227 (304)
Q Consensus 165 ~~~--~~---------~l~-~~~-~~~l~~~~~~~~~~~--~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~--~c 227 (304)
... .+ .++ +.. ...++.++ .... .+++|+.|++++|....+ + .....+++|+.|. .+
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~~~l~~L~~L~Ls~N~l~~i-p--~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLS---DDFRATTLPYLVGIDLSYNSFSKF-P--TQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCCBCC---GGGSTTTCTTCCEEECCSSCCSSC-C--CGGGGCSSCCEEECCSC
T ss_pred CHHHhccccccccccCCccEEECcCCcCCccC---hhhhhccCCCcCEEECCCCCCCCc-C--hhhhcCCCCCEEECCCC
Confidence 100 00 000 000 00111111 0111 346666666666654332 1 1123455666655 11
Q ss_pred -----CCCCcccchhhhhhccCccccccccccccceeecccccCcccccCCCCcCCCCCCcccEEEEecCC
Q 039067 228 -----GDDSTCFPIWNVFSEEGSLEKHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCA 293 (304)
Q Consensus 228 -----~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~ 293 (304)
..+....|. .+..+++|++|+++++. ++.++.. .+++|++|++++++
T Consensus 547 ~~ls~N~l~~~~p~------------~l~~l~~L~~L~Ls~N~-l~~ip~~------~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 547 RDAQGNRTLREWPE------------GITLCPSLTQLQIGSND-IRKVNEK------ITPNISVLDIKDNP 598 (636)
T ss_dssp BCTTCCBCCCCCCT------------TGGGCSSCCEEECCSSC-CCBCCSC------CCTTCCEEECCSCT
T ss_pred cccccCcccccChH------------HHhcCCCCCEEECCCCc-CCccCHh------HhCcCCEEECcCCC
Confidence 112222332 23467888888888874 4666333 23788888888886
No 46
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.30 E-value=1.7e-11 Score=122.18 Aligned_cols=237 Identities=13% Similarity=0.062 Sum_probs=131.7
Q ss_pred cccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCc-ccEEeeccCccccchhcc
Q 039067 19 KVALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQ-LQHLDIRHCEDLQEIISE 97 (304)
Q Consensus 19 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~-L~~L~i~~c~~l~~l~~~ 97 (304)
...+++|+.|+|++|++..++ . ... +++|+.|+++++ .+..++. . ...+++ |++|++++|. +..++..
T Consensus 569 l~~L~~L~~L~Ls~N~l~~lp-~-~~~-----L~~L~~L~Ls~N-~l~~lp~-~-l~~l~~~L~~L~Ls~N~-L~~lp~~ 637 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVRHLE-A-FGT-----NVKLTDLKLDYN-QIEEIPE-D-FCAFTDQVEGLGFSHNK-LKYIPNI 637 (876)
T ss_dssp HTTCTTCCEEECTTSCCCBCC-C-CCT-----TSEESEEECCSS-CCSCCCT-T-SCEECTTCCEEECCSSC-CCSCCSC
T ss_pred hhcCCCCCEEECCCCCcccch-h-hcC-----CCcceEEECcCC-ccccchH-H-HhhccccCCEEECcCCC-CCcCchh
Confidence 456889999999999777665 2 111 789999999987 5666632 2 467788 9999999986 6666543
Q ss_pred cCC---CccceeecccCccceec----CCCcccCCCCccceeeecccccccccccC---CCCCCCCCCCCCccccccccc
Q 039067 98 NRA---DQLTTLGLQYLPKLRCL----YPGMHTSEWPALESLLVRHCDKLKIFAAD---LSQNNENDQLGIPEQQLLWPL 167 (304)
Q Consensus 98 ~~~---~~L~~L~L~~c~~L~~~----~~~~~~~~l~~L~~L~l~~C~~L~~l~~~---~~~~l~~~~~~~~~~~~l~~~ 167 (304)
... ++|+.|+++++. +.+. +.......+++|+.|++++| +++.+|.. ..+.++.+.++......+...
T Consensus 638 ~~~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp CCTTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred hhccccCCCCEEECcCCc-CCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 221 458888888873 3222 11111123457888888877 46666652 233444444433322211110
Q ss_pred cc-----------cc-ceec-cccccceeeeeccch--hcccccEEEeccccccccccccCccccccCccccc--cc---
Q 039067 168 EK-----------SL-RVTV-DHQLTSLVIMIDDDQ--IVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE--IV--- 227 (304)
Q Consensus 168 ~~-----------~l-~~~~-~~~l~~~~~~~~~~~--~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~--~c--- 227 (304)
.. .+ .+.. ...++.++. ... .+++|+.|++++|....+. .....+++|+.|. .+
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~---~l~~~~l~~L~~L~Ls~N~L~~lp---~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSD---DFRATTLPYLSNMDVSYNCFSSFP---TQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCCCCCG---GGSTTTCTTCCEEECCSSCCSSCC---CGGGGCTTCCEEECCCCBCT
T ss_pred HhccccccccccCCccEEECCCCCCccchH---HhhhccCCCcCEEEeCCCCCCccc---hhhhcCCCCCEEECCCCCCc
Confidence 00 00 0000 001111110 111 3466667777666553321 1134556666665 11
Q ss_pred --CCCCcccchhhhhhccCccccccccccccceeecccccCcccccCCCCcCCCCCCcccEEEEecCC
Q 039067 228 --GDDSTCFPIWNVFSEEGSLEKHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCA 293 (304)
Q Consensus 228 --~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~ 293 (304)
..+...+|. .+..+++|++|+++++ ++..++.. .+++|+.|++++|+
T Consensus 790 s~N~l~~~ip~------------~l~~L~~L~~L~Ls~N-~L~~Ip~~------l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 790 EGNRILRQWPT------------GITTCPSLIQLQIGSN-DIRKVDEK------LTPQLYILDIADNP 838 (876)
T ss_dssp TCCBCCCCCCT------------TGGGCSSCCEEECCSS-CCCBCCSC------CCSSSCEEECCSCT
T ss_pred ccccccccChH------------HHhcCCCCCEEECCCC-CCCccCHh------hcCCCCEEECCCCC
Confidence 222223332 3446888999999888 45666443 23689999999887
No 47
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.30 E-value=2e-11 Score=103.37 Aligned_cols=179 Identities=14% Similarity=0.116 Sum_probs=125.8
Q ss_pred cCCccceeeeccee-eeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccC
Q 039067 21 ALPNLEALEISEIN-VNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENR 99 (304)
Q Consensus 21 ~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~ 99 (304)
.+++|++|++++++ ++.+....... +++|++|++++|.+++.+++ ..+..+++|++|++++|. +..++.-..
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~~-----l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~L~l~~n~-l~~lp~~~~ 125 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFYN-----LSKVTHIEIRNTRNLTYIDP-DALKELPLLKFLGIFNTG-LKMFPDLTK 125 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEES-----CTTCCEEEEEEETTCCEECT-TSEECCTTCCEEEEEEEC-CCSCCCCTT
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcCC-----CcCCcEEECCCCCCeeEcCH-HHhCCCCCCCEEeCCCCC-Ccccccccc
Confidence 58999999999996 88876544333 89999999999778988844 344679999999999996 666654333
Q ss_pred CCccc---eeecccCccceecCCCcccCCCCccc-eeeecccccccccccCCCCCCCCCCCCCcccccccccccccceec
Q 039067 100 ADQLT---TLGLQYLPKLRCLYPGMHTSEWPALE-SLLVRHCDKLKIFAADLSQNNENDQLGIPEQQLLWPLEKSLRVTV 175 (304)
Q Consensus 100 ~~~L~---~L~L~~c~~L~~~~~~~~~~~l~~L~-~L~l~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~ 175 (304)
.++|+ +|+++++++++.++.... ..+++|+ .|+++++ +++.+|...
T Consensus 126 l~~L~~L~~L~l~~N~~l~~i~~~~~-~~l~~L~~~L~l~~n-~l~~i~~~~---------------------------- 175 (239)
T 2xwt_C 126 VYSTDIFFILEITDNPYMTSIPVNAF-QGLCNETLTLKLYNN-GFTSVQGYA---------------------------- 175 (239)
T ss_dssp CCBCCSEEEEEEESCTTCCEECTTTT-TTTBSSEEEEECCSC-CCCEECTTT----------------------------
T ss_pred ccccccccEEECCCCcchhhcCcccc-cchhcceeEEEcCCC-CCcccCHhh----------------------------
Confidence 36777 999999878888876532 3689999 9999988 477665321
Q ss_pred cccccceeeeeccchhcccccEEEecccc-ccccccccCccccc-cCccccc-ccCCCCcccchhhhhhccCcccccccc
Q 039067 176 DHQLTSLVIMIDDDQIVSNFKELSLSGKD-VKMILQADFPQHLF-GSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGK 252 (304)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~-~~~~~~~~~~~~~l-~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~ 252 (304)
. ..++|++|++++|. ...+.. ..+..+ ++|+.|. ....+.. +|. ..
T Consensus 176 ------------~--~~~~L~~L~L~~n~~l~~i~~--~~~~~l~~~L~~L~l~~N~l~~-l~~--------------~~ 224 (239)
T 2xwt_C 176 ------------F--NGTKLDAVYLNKNKYLTVIDK--DAFGGVYSGPSLLDVSQTSVTA-LPS--------------KG 224 (239)
T ss_dssp ------------T--TTCEEEEEECTTCTTCCEECT--TTTTTCSBCCSEEECTTCCCCC-CCC--------------TT
T ss_pred ------------c--CCCCCCEEEcCCCCCcccCCH--HHhhccccCCcEEECCCCcccc-CCh--------------hH
Confidence 0 12588999999885 443321 124556 7788777 3333332 332 15
Q ss_pred ccccceeecccccCc
Q 039067 253 LAMIKELKLYRPYHL 267 (304)
Q Consensus 253 l~~L~~L~l~~c~~L 267 (304)
+++|+.|.+.++..|
T Consensus 225 ~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 225 LEHLKELIARNTWTL 239 (239)
T ss_dssp CTTCSEEECTTC---
T ss_pred hccCceeeccCccCC
Confidence 788999999887653
No 48
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.29 E-value=1.4e-11 Score=121.79 Aligned_cols=67 Identities=19% Similarity=0.106 Sum_probs=36.8
Q ss_pred ccccCCccceeeecceeeee-ecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCc
Q 039067 18 EKVALPNLEALEISEINVNK-IWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCE 89 (304)
Q Consensus 18 ~~~~~~~L~~L~L~~~~l~~-~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~ 89 (304)
....+++|++|+|++|.+.. ++....... +++|++|++++|. +....+......+++|++|++++|.
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~----l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGS----CSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGGGGGGGG----CTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSC
T ss_pred hhccCCCCCEEECCCCcCCCcCCChHHHhC----CCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCc
Confidence 44457888888888886653 322111111 6777777777663 3222222222456666666666664
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.29 E-value=5e-12 Score=122.38 Aligned_cols=258 Identities=12% Similarity=0.113 Sum_probs=137.9
Q ss_pred cccCCccceeeecceeeee------------------ecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcc
Q 039067 19 KVALPNLEALEISEINVNK------------------IWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQL 80 (304)
Q Consensus 19 ~~~~~~L~~L~L~~~~l~~------------------~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L 80 (304)
...+++|++|+|++++++. ++....... +++|++|++++|.-...+ | ..+..+++|
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~----l~~L~~L~L~~n~l~~~~-p-~~l~~l~~L 275 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN----LKDLTDVEVYNCPNLTKL-P-TFLKALPEM 275 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG----CTTCCEEEEECCTTCSSC-C-TTTTTCSSC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc----cCCCCEEEecCCcCCccC-h-HHHhcCCCC
Confidence 4468999999999997766 443322001 899999999998655555 3 235688999
Q ss_pred cEEeeccCccccc--hhcccC-------CCccceeecccCccceecCCCcccCCCCccceeeeccccccc-cccc-CCCC
Q 039067 81 QHLDIRHCEDLQE--IISENR-------ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLK-IFAA-DLSQ 149 (304)
Q Consensus 81 ~~L~i~~c~~l~~--l~~~~~-------~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~-~l~~-~~~~ 149 (304)
++|++++|..+.. ++...+ .++|++|+++++ +++.++.......+++|+.|+++++. ++ .+|. ....
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCC-CEEECCCCEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCc-CccchhhhCCCC
Confidence 9999999974542 443322 278999999887 56666651123468889999998884 66 6651 1122
Q ss_pred CCCCCCCCCcccccccccccc----cc-eec-cccccceeeeeccchhcccccEEEeccccccccccccCc-----cccc
Q 039067 150 NNENDQLGIPEQQLLWPLEKS----LR-VTV-DHQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFP-----QHLF 218 (304)
Q Consensus 150 ~l~~~~~~~~~~~~l~~~~~~----l~-~~~-~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~-----~~~l 218 (304)
.++.+.++......+...-+. ++ +.. ...++.++... ....+++|+.|++++|......+..+. ...+
T Consensus 354 ~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF-DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCC-CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhh-hhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 344443333322211110000 00 000 00111111000 000123566666666554322111010 0133
Q ss_pred cCccccc-ccCCCCcccchhhhhhccCccccccccccccceeecccccCcccccCCCCcC----CCCCCcccEEEEecCC
Q 039067 219 GSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIKELKLYRPYHLKQLGKQDSKL----GPIFQYLEILEVYYCA 293 (304)
Q Consensus 219 ~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~----~~~~~~L~~L~i~~C~ 293 (304)
++|+.|. ....+. .+|..+ +..+++|++|+++++ .++.+....+.. ...+++|++|++++|.
T Consensus 433 ~~L~~L~Ls~N~l~-~lp~~~-----------~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 433 INVSSINLSNNQIS-KFPKEL-----------FSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp CCEEEEECCSSCCC-SCCTHH-----------HHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred CCCCEEECcCCccC-cCCHHH-----------HccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc
Confidence 4555555 222222 233322 235789999999987 466665443221 0123389999999885
Q ss_pred Cceecc
Q 039067 294 RNAESS 299 (304)
Q Consensus 294 ~L~~l~ 299 (304)
++.++
T Consensus 500 -l~~lp 504 (636)
T 4eco_A 500 -LTKLS 504 (636)
T ss_dssp -CCBCC
T ss_pred -CCccC
Confidence 55554
No 50
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.29 E-value=3.4e-11 Score=106.18 Aligned_cols=110 Identities=17% Similarity=0.241 Sum_probs=85.4
Q ss_pred ccccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc
Q 039067 18 EKVALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE 97 (304)
Q Consensus 18 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~ 97 (304)
....+++|++|++++|++..+.. ... +++|++|+++++ .++.++ ....+++|++|++++|. +..+..-
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~--~~~-----l~~L~~L~L~~n-~l~~~~---~~~~l~~L~~L~l~~n~-l~~~~~l 125 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP--LKN-----LTKITELELSGN-PLKNVS---AIAGLQSIKTLDLTSTQ-ITDVTPL 125 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTT-----CCSCCEEECCSC-CCSCCG---GGTTCTTCCEEECTTSC-CCCCGGG
T ss_pred hhhccCCCCEEEccCCcCCCChh--Hcc-----CCCCCEEEccCC-cCCCch---hhcCCCCCCEEECCCCC-CCCchhh
Confidence 34568999999999998776654 222 899999999998 577773 35678999999999996 7666554
Q ss_pred cCCCccceeecccCccceecCCCcccCCCCccceeeecccccccccc
Q 039067 98 NRADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFA 144 (304)
Q Consensus 98 ~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 144 (304)
...++|++|+++++ .+..++. ...+++|+.|++++| +++.++
T Consensus 126 ~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~ 167 (308)
T 1h6u_A 126 AGLSNLQVLYLDLN-QITNISP---LAGLTNLQYLSIGNA-QVSDLT 167 (308)
T ss_dssp TTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCCCG
T ss_pred cCCCCCCEEECCCC-ccCcCcc---ccCCCCccEEEccCC-cCCCCh
Confidence 44599999999988 5666553 346899999999998 577654
No 51
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.28 E-value=1.5e-12 Score=115.72 Aligned_cols=211 Identities=14% Similarity=0.151 Sum_probs=127.7
Q ss_pred cccCCccceeeecceeeeeecccC-CCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccc--hh
Q 039067 19 KVALPNLEALEISEINVNKIWHYN-HLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQE--II 95 (304)
Q Consensus 19 ~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~--l~ 95 (304)
...+++|++|++++|++...+... ... +++|++|++++| .+....+. ....+++|++|++++|..+.. ++
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~-----~~~L~~L~L~~~-~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~ 161 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQ-----CSKLQNLSLEGL-RLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQ 161 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTT-----BCCCSEEECTTC-BCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHH
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhh-----CCCCCEEeCcCc-ccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHH
Confidence 345899999999999765421111 111 899999999998 46544233 345699999999999976663 22
Q ss_pred cc-cCCCccceeecccCccceecCCCcccCCCC-ccceeeecccc-cccc--cccCCCCCCCCCCCCCcccccccccccc
Q 039067 96 SE-NRADQLTTLGLQYLPKLRCLYPGMHTSEWP-ALESLLVRHCD-KLKI--FAADLSQNNENDQLGIPEQQLLWPLEKS 170 (304)
Q Consensus 96 ~~-~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~-~L~~L~l~~C~-~L~~--l~~~~~~~l~~~~~~~~~~~~l~~~~~~ 170 (304)
.. ...++|++|++++|.++...........++ +|+.|++++|. .++. ++.
T Consensus 162 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~------------------------- 216 (336)
T 2ast_B 162 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST------------------------- 216 (336)
T ss_dssp HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-------------------------
T ss_pred HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-------------------------
Confidence 21 223899999999997776532111234588 99999999996 3432 111
Q ss_pred cceeccccccceeeeeccchhcccccEEEeccccc-cccccccCccccccCccccc--ccCCCCcccchhhhhhccCccc
Q 039067 171 LRVTVDHQLTSLVIMIDDDQIVSNFKELSLSGKDV-KMILQADFPQHLFGSLKQLE--IVGDDSTCFPIWNVFSEEGSLE 247 (304)
Q Consensus 171 l~~~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~~~l~~L~~L~--~c~~~~~~~p~~~~~~l~~~~~ 247 (304)
....+++|+.|++++|.. ..... .....+++|+.|. .|.... +..+
T Consensus 217 -----------------~~~~~~~L~~L~l~~~~~l~~~~~--~~l~~l~~L~~L~l~~~~~~~---~~~~--------- 265 (336)
T 2ast_B 217 -----------------LVRRCPNLVHLDLSDSVMLKNDCF--QEFFQLNYLQHLSLSRCYDII---PETL--------- 265 (336)
T ss_dssp -----------------HHHHCTTCSEEECTTCTTCCGGGG--GGGGGCTTCCEEECTTCTTCC---GGGG---------
T ss_pred -----------------HHhhCCCCCEEeCCCCCcCCHHHH--HHHhCCCCCCEeeCCCCCCCC---HHHH---------
Confidence 111367888888888873 21111 1234567777777 443222 1110
Q ss_pred cccccccccceeecccccCcccccCCCCcCCCCC-CcccEEEEecCCCceeccCC
Q 039067 248 KHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPIF-QYLEILEVYYCARNAESSTP 301 (304)
Q Consensus 248 ~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~-~~L~~L~i~~C~~L~~l~~~ 301 (304)
..+..+++|++|++++| +..++.. .+ .+|+.|++ +|.+++.+..+
T Consensus 266 ~~l~~~~~L~~L~l~~~-----i~~~~~~---~l~~~l~~L~l-~~n~l~~~~~~ 311 (336)
T 2ast_B 266 LELGEIPTLKTLQVFGI-----VPDGTLQ---LLKEALPHLQI-NCSHFTTIARP 311 (336)
T ss_dssp GGGGGCTTCCEEECTTS-----SCTTCHH---HHHHHSTTSEE-SCCCSCCTTCS
T ss_pred HHHhcCCCCCEEeccCc-----cCHHHHH---HHHhhCcceEE-ecccCccccCC
Confidence 12345788888888887 3222221 11 23445555 56666665543
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.28 E-value=3e-11 Score=106.07 Aligned_cols=215 Identities=15% Similarity=0.098 Sum_probs=137.0
Q ss_pred ceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchh----cccCCC
Q 039067 26 EALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEII----SENRAD 101 (304)
Q Consensus 26 ~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~----~~~~~~ 101 (304)
+.++.++.+++.++... .++|++|+++++ +++.++ ......+++|++|+++++. +..+. .....+
T Consensus 10 ~~l~c~~~~l~~ip~~~--------~~~l~~L~L~~n-~l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~ 78 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI--------PSSATRLELESN-KLQSLP-HGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTT 78 (306)
T ss_dssp TEEECCSSCCSSCCSCC--------CTTCCEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCS
T ss_pred CEEEcCCCCcccCCCCC--------CCCCCEEECCCC-ccCccC-HhHhhccccCCEEECCCCc-cCcccCccccccccc
Confidence 34555555666555431 579999999997 678774 3445789999999999985 44321 112348
Q ss_pred ccceeecccCccceecCCCcccCCCCccceeeeccccccccccc-C---CCCCCCCCCCCCcccccccccccccceeccc
Q 039067 102 QLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA-D---LSQNNENDQLGIPEQQLLWPLEKSLRVTVDH 177 (304)
Q Consensus 102 ~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~-~---~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 177 (304)
+|++|+++++ .+..++.. ...+++|+.|+++++ +++.++. . ..+.++.+.++.........
T Consensus 79 ~L~~L~Ls~n-~i~~l~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------- 143 (306)
T 2z66_A 79 SLKYLDLSFN-GVITMSSN--FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN----------- 143 (306)
T ss_dssp CCCEEECCSC-SEEEEEEE--EETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECST-----------
T ss_pred ccCEEECCCC-ccccChhh--cCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccch-----------
Confidence 9999999998 56666543 246899999999998 4766653 1 12233333332222111110
Q ss_pred cccceeeeeccchhcccccEEEeccccccc-cccccCccccccCccccc-ccCCCCcccchhhhhhccCccccccccccc
Q 039067 178 QLTSLVIMIDDDQIVSNFKELSLSGKDVKM-ILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAM 255 (304)
Q Consensus 178 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~-~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~ 255 (304)
..-..+++|++|++++|.... ... .....+++|+.|. ....+....|.. +..+++
T Consensus 144 ---------~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~------------~~~l~~ 200 (306)
T 2z66_A 144 ---------GIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQCQLEQLSPTA------------FNSLSS 200 (306)
T ss_dssp ---------TTTTTCTTCCEEECTTCEEGGGEEC--SCCTTCTTCCEEECTTSCCCEECTTT------------TTTCTT
T ss_pred ---------hhcccCcCCCEEECCCCccccccch--hHHhhCcCCCEEECCCCCcCCcCHHH------------hcCCCC
Confidence 011136889999999887643 211 2245677888887 434444443432 346899
Q ss_pred cceeecccccCcccccCCCCcCCCCCCcccEEEEecCC
Q 039067 256 IKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCA 293 (304)
Q Consensus 256 L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~ 293 (304)
|++|+++++ .++.+.... ...+++|++|+++++.
T Consensus 201 L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 201 LQVLNMSHN-NFFSLDTFP---YKCLNSLQVLDYSLNH 234 (306)
T ss_dssp CCEEECTTS-CCSBCCSGG---GTTCTTCCEEECTTSC
T ss_pred CCEEECCCC-ccCccChhh---ccCcccCCEeECCCCC
Confidence 999999987 455554332 2368999999999885
No 53
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.28 E-value=3e-11 Score=115.93 Aligned_cols=246 Identities=14% Similarity=0.033 Sum_probs=139.3
Q ss_pred cccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc
Q 039067 19 KVALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN 98 (304)
Q Consensus 19 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~ 98 (304)
...+++|+.|++.++.+..++ .... +++|++|++++|. +..++ . . .+++|++|++++|..+..+. ..
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-~l~~------~~~L~~L~l~~n~-l~~lp--~-~-~l~~L~~L~l~~n~~~~~~~-~~ 347 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-DVPK------HFKWQSLSIIRCQ-LKQFP--T-L-DLPFLKSLTLTMNKGSISFK-KV 347 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-CCCT------TCCCSEEEEESCC-CSSCC--C-C-CCSSCCEEEEESCSSCEECC-CC
T ss_pred cccCCCCCEEEecCccchhhh-hccc------cccCCEEEccccc-Ccccc--c-C-CCCccceeeccCCcCccchh-hc
Confidence 345789999999999776665 2121 7899999999984 57774 2 2 78999999999997565442 22
Q ss_pred CCCccceeecccCccceecCC-CcccCCCCccceeeeccccccccccc--CCCCCCCCCCCCCcccccccc--cccc---
Q 039067 99 RADQLTTLGLQYLPKLRCLYP-GMHTSEWPALESLLVRHCDKLKIFAA--DLSQNNENDQLGIPEQQLLWP--LEKS--- 170 (304)
Q Consensus 99 ~~~~L~~L~L~~c~~L~~~~~-~~~~~~l~~L~~L~l~~C~~L~~l~~--~~~~~l~~~~~~~~~~~~l~~--~~~~--- 170 (304)
..++|+.|+++++ ++++... ......+++|+.|++++|. ++.+|. .....++.+.++......... ..+.
T Consensus 348 ~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 348 ALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred cCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 3489999999987 5555521 1122468999999999985 766653 222334444443332222111 0000
Q ss_pred cc-eecc-ccccceeeeeccchhcccccEEEeccccccc-cccccCccccccCccccc-ccCCCCcccchhhhhhccCcc
Q 039067 171 LR-VTVD-HQLTSLVIMIDDDQIVSNFKELSLSGKDVKM-ILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSL 246 (304)
Q Consensus 171 l~-~~~~-~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~-~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~ 246 (304)
++ +... ..++... ...-..+++|+.|++++|.... ..+ .....+++|+.|. ....+....|
T Consensus 426 L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~----------- 490 (606)
T 3vq2_A 426 LLYLDISYTNTKIDF--DGIFLGLTSLNTLKMAGNSFKDNTLS--NVFANTTNLTFLDLSKCQLEQISW----------- 490 (606)
T ss_dssp CCEEECTTSCCEECC--TTTTTTCTTCCEEECTTCEEGGGEEC--SCCTTCTTCCEEECTTSCCCEECT-----------
T ss_pred CCEEECcCCCCCccc--hhhhcCCCCCCEEECCCCcCCCcchH--HhhccCCCCCEEECCCCcCCccCh-----------
Confidence 00 0000 0000000 0001124556666665554322 111 1134445555555 2223333323
Q ss_pred ccccccccccceeecccccCcccccCCCCcCCCCCCcccEEEEecCCCceeccC
Q 039067 247 EKHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCARNAESST 300 (304)
Q Consensus 247 ~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~ 300 (304)
..+..+++|++|+++++ +++.+....+ ..+++|++|++++|. ++.++.
T Consensus 491 -~~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~l~~N~-l~~~p~ 538 (606)
T 3vq2_A 491 -GVFDTLHRLQLLNMSHN-NLLFLDSSHY---NQLYSLSTLDCSFNR-IETSKG 538 (606)
T ss_dssp -TTTTTCTTCCEEECCSS-CCSCEEGGGT---TTCTTCCEEECTTSC-CCCEES
T ss_pred -hhhcccccCCEEECCCC-cCCCcCHHHc---cCCCcCCEEECCCCc-CcccCH
Confidence 22446889999999988 4555533332 378899999999886 665543
No 54
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.27 E-value=6.9e-11 Score=112.32 Aligned_cols=215 Identities=15% Similarity=0.093 Sum_probs=131.0
Q ss_pred ccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchh---c-ccC
Q 039067 24 NLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEII---S-ENR 99 (304)
Q Consensus 24 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~---~-~~~ 99 (304)
+|+.|++++|++..++.. . +++|++|++.++...... +. ..+++|++|++++|. +..+. . ...
T Consensus 305 ~L~~L~l~~n~~~~l~~~----~----l~~L~~L~l~~n~~~~~~-~~---~~~~~L~~L~l~~n~-l~~~~~~~~~~~~ 371 (570)
T 2z63_A 305 GWQHLELVNCKFGQFPTL----K----LKSLKRLTFTSNKGGNAF-SE---VDLPSLEFLDLSRNG-LSFKGCCSQSDFG 371 (570)
T ss_dssp CCSEEEEESCBCSSCCBC----B----CSSCCEEEEESCBSCCBC-CC---CBCTTCCEEECCSSC-CBEEEEEEHHHHT
T ss_pred CccEEeeccCcccccCcc----c----ccccCEEeCcCCcccccc-cc---ccCCCCCEEeCcCCc-cCccccccccccc
Confidence 899999999977654432 1 788888888887533322 22 567888888888875 43321 1 122
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeeccccccccccc----CCCCCCCCCCCCCcccccccccccccceec
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA----DLSQNNENDQLGIPEQQLLWPLEKSLRVTV 175 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~----~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~ 175 (304)
.++|++|+++++ .+..++.. ...+++|+.|++.+|. ++..+. .....++.+.++.........
T Consensus 372 ~~~L~~L~l~~n-~l~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------- 438 (570)
T 2z63_A 372 TTSLKYLDLSFN-GVITMSSN--FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--------- 438 (570)
T ss_dssp CSCCCEEECCSC-SEEEEEEE--EETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCT---------
T ss_pred cCccCEEECCCC-cccccccc--ccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccch---------
Confidence 378888888877 45555443 2457888888888874 544322 122223333332222111110
Q ss_pred cccccceeeeeccchhcccccEEEecccccc-ccccccCccccccCccccc-ccCCCCcccchhhhhhccCccccccccc
Q 039067 176 DHQLTSLVIMIDDDQIVSNFKELSLSGKDVK-MILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKL 253 (304)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~-~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l 253 (304)
..-..+++|+.|++++|... ...+ .....+++|+.|. ....+....|.+ +..+
T Consensus 439 -----------~~~~~l~~L~~L~l~~n~l~~~~~p--~~~~~l~~L~~L~l~~n~l~~~~~~~------------~~~l 493 (570)
T 2z63_A 439 -----------GIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQCQLEQLSPTA------------FNSL 493 (570)
T ss_dssp -----------TTTTTCTTCCEEECTTCEEGGGEEC--SCCTTCTTCCEEECTTSCCCEECTTT------------TTTC
T ss_pred -----------hhhhcCCcCcEEECcCCcCccccch--hhhhcccCCCEEECCCCccccCChhh------------hhcc
Confidence 01113688999999988753 2222 2246678888887 333444444433 3468
Q ss_pred cccceeecccccCcccccCCCCcCCCCCCcccEEEEecCC
Q 039067 254 AMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCA 293 (304)
Q Consensus 254 ~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~ 293 (304)
++|++|+++++ +++.+....+ ..+++|++|++.+++
T Consensus 494 ~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 494 SSLQVLNMASN-QLKSVPDGIF---DRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCCEEECCSS-CCSCCCTTTT---TTCTTCCEEECCSSC
T ss_pred cCCCEEeCCCC-cCCCCCHHHh---hcccCCcEEEecCCc
Confidence 89999999988 5766654433 378999999999865
No 55
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.27 E-value=8.9e-11 Score=101.50 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=58.9
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--C
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--R 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~ 99 (304)
+++|+.|.+.+++++.+..- .. +++|++|+++++ .+..++ ....+++|++|++++|. +..++... .
T Consensus 40 l~~L~~L~l~~~~i~~~~~l--~~-----l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~L~~n~-l~~~~~~~~~~ 107 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGI--QY-----LPNVRYLALGGN-KLHDIS---ALKELTNLTYLILTGNQ-LQSLPNGVFDK 107 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTG--GG-----CTTCCEEECTTS-CCCCCG---GGTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred ccceeeeeeCCCCccccccc--cc-----CCCCcEEECCCC-CCCCch---hhcCCCCCCEEECCCCc-cCccChhHhcC
Confidence 56666666666655443211 11 667777777665 354442 23456677777776663 54444321 2
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeecccccccccc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFA 144 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 144 (304)
.++|++|+++++ +++.++... ...+++|+.|++++| +++.++
T Consensus 108 l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~ 149 (272)
T 3rfs_A 108 LTNLKELVLVEN-QLQSLPDGV-FDKLTNLTYLNLAHN-QLQSLP 149 (272)
T ss_dssp CTTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCC
T ss_pred CcCCCEEECCCC-cCCccCHHH-hccCCCCCEEECCCC-ccCccC
Confidence 266666666665 455544332 124566666666666 355443
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.27 E-value=8.2e-11 Score=117.44 Aligned_cols=112 Identities=18% Similarity=0.117 Sum_probs=76.7
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc--cC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE--NR 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~ 99 (304)
.++|++|+++++++..+....... +++|+.|+++++ ++..+++ .....+++|++|++++|. +..+... ..
T Consensus 265 ~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 336 (844)
T 3j0a_A 265 RSSVRHLDLSHGFVFSLNSRVFET-----LKDLKVLNLAYN-KINKIAD-EAFYGLDNLQVLNLSYNL-LGELYSSNFYG 336 (844)
T ss_dssp TSCCCEEECTTCCCCEECSCCSSS-----CCCCCEEEEESC-CCCEECT-TTTTTCSSCCEEEEESCC-CSCCCSCSCSS
T ss_pred cCCccEEECCCCcccccChhhhhc-----CCCCCEEECCCC-cCCCCCh-HHhcCCCCCCEEECCCCC-CCccCHHHhcC
Confidence 478999999998776654333222 789999999886 5666644 334678899999998885 5544322 22
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeecccccccccc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFA 144 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 144 (304)
.++|+.|+++++ .+..++... ...+++|+.|+++++ .++.++
T Consensus 337 l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N-~l~~i~ 378 (844)
T 3j0a_A 337 LPKVAYIDLQKN-HIAIIQDQT-FKFLEKLQTLDLRDN-ALTTIH 378 (844)
T ss_dssp CTTCCEEECCSC-CCCCCCSSC-SCSCCCCCEEEEETC-CSCCCS
T ss_pred CCCCCEEECCCC-CCCccChhh-hcCCCCCCEEECCCC-CCCccc
Confidence 378888888887 566665442 235788888888887 365544
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.26 E-value=3.4e-11 Score=114.47 Aligned_cols=226 Identities=15% Similarity=0.108 Sum_probs=133.3
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCC
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRA 100 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 100 (304)
.+++|++|+++++.+..++..... + +|++|++++| .+..++. ..+++|++|++++|....... ....
T Consensus 280 ~l~~L~~L~l~~~~l~~l~~~~~~------~-~L~~L~l~~n-~~~~l~~----~~l~~L~~L~l~~n~~~~~~~-~~~~ 346 (570)
T 2z63_A 280 CLTNVSSFSLVSVTIERVKDFSYN------F-GWQHLELVNC-KFGQFPT----LKLKSLKRLTFTSNKGGNAFS-EVDL 346 (570)
T ss_dssp GGTTCSEEEEESCEECSCCBCCSC------C-CCSEEEEESC-BCSSCCB----CBCSSCCEEEEESCBSCCBCC-CCBC
T ss_pred CcCcccEEEecCccchhhhhhhcc------C-CccEEeeccC-cccccCc----ccccccCEEeCcCCccccccc-cccC
Confidence 467888888888876655433211 5 8888888887 4555532 357888888888886333222 2334
Q ss_pred CccceeecccCccceecCC-CcccCCCCccceeeecccccccccccC--CCCCCCCCCCCCcccccccccccccceeccc
Q 039067 101 DQLTTLGLQYLPKLRCLYP-GMHTSEWPALESLLVRHCDKLKIFAAD--LSQNNENDQLGIPEQQLLWPLEKSLRVTVDH 177 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~-~~~~~~l~~L~~L~l~~C~~L~~l~~~--~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 177 (304)
++|++|+++++ ++..... ......+++|+.|++++|. ++.++.. ..+.++.+.++..........
T Consensus 347 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------- 414 (570)
T 2z63_A 347 PSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEF---------- 414 (570)
T ss_dssp TTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTS----------
T ss_pred CCCCEEeCcCC-ccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccch----------
Confidence 88888888877 3444321 0112357888888888873 5555431 222333333322221111000
Q ss_pred cccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCC-cccchhhhhhccCccccccccccc
Q 039067 178 QLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDS-TCFPIWNVFSEEGSLEKHVGKLAM 255 (304)
Q Consensus 178 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~-~~~p~~~~~~l~~~~~~~~~~l~~ 255 (304)
..-..+++|+.|++++|....... .....+++|+.|. ....+. ..+|. .+..+++
T Consensus 415 ---------~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~p~------------~~~~l~~ 471 (570)
T 2z63_A 415 ---------SVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLKMAGNSFQENFLPD------------IFTELRN 471 (570)
T ss_dssp ---------CTTTTCTTCCEEECTTSCCEECCT--TTTTTCTTCCEEECTTCEEGGGEECS------------CCTTCTT
T ss_pred ---------hhhhcCCCCCEEeCcCCcccccch--hhhhcCCcCcEEECcCCcCccccchh------------hhhcccC
Confidence 011136788999998887644322 1245677788877 222222 23442 2447899
Q ss_pred cceeecccccCcccccCCCCcCCCCCCcccEEEEecCCCceecc
Q 039067 256 IKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCARNAESS 299 (304)
Q Consensus 256 L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~~L~~l~ 299 (304)
|++|++++| +++.+....+ ..+++|++|++++| +++.++
T Consensus 472 L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n-~l~~~~ 510 (570)
T 2z63_A 472 LTFLDLSQC-QLEQLSPTAF---NSLSSLQVLNMASN-QLKSVP 510 (570)
T ss_dssp CCEEECTTS-CCCEECTTTT---TTCTTCCEEECCSS-CCSCCC
T ss_pred CCEEECCCC-ccccCChhhh---hcccCCCEEeCCCC-cCCCCC
Confidence 999999998 4665544333 37899999999998 455543
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.26 E-value=1.4e-10 Score=112.73 Aligned_cols=110 Identities=23% Similarity=0.226 Sum_probs=59.5
Q ss_pred cCCccceeeeccee--eeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc-
Q 039067 21 ALPNLEALEISEIN--VNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE- 97 (304)
Q Consensus 21 ~~~~L~~L~L~~~~--l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~- 97 (304)
.+++|++|++++|. +..+........ . .++|+.|++++| ++..+.+ .....+++|++|++++|.--..++..
T Consensus 351 ~l~~L~~L~Ls~n~~~~~~l~~~~f~~~-~--~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~ 425 (680)
T 1ziw_A 351 GLINLKYLSLSNSFTSLRTLTNETFVSL-A--HSPLHILNLTKN-KISKIES-DAFSWLGHLEVLDLGLNEIGQELTGQE 425 (680)
T ss_dssp TCTTCCEEECTTCBSCCCEECTTTTGGG-T--TSCCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSCCEEECCSGG
T ss_pred cccCCcEEECCCCchhhhhcchhhhccc-c--cCcCceEECCCC-CCCeECh-hhhhCCCCCCEEeCCCCcCccccCccc
Confidence 47889999998883 444433221110 0 356777777776 4555533 23356677777777777522222211
Q ss_pred -cCCCccceeecccCccceecCCCcccCCCCccceeeeccc
Q 039067 98 -NRADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHC 137 (304)
Q Consensus 98 -~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C 137 (304)
.+.++|++|+++++ ++..+..... ..+++|+.|++.++
T Consensus 426 ~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~~~~L~~L~l~~n 464 (680)
T 1ziw_A 426 WRGLENIFEIYLSYN-KYLQLTRNSF-ALVPSLQRLMLRRV 464 (680)
T ss_dssp GTTCTTCCEEECCSC-SEEECCTTTT-TTCTTCCEEECTTS
T ss_pred ccCcccccEEecCCC-CcceeChhhh-hcCcccccchhccc
Confidence 12266777777666 3444433221 24566666666555
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.26 E-value=6.8e-11 Score=111.39 Aligned_cols=105 Identities=21% Similarity=0.291 Sum_probs=70.3
Q ss_pred CccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCCc
Q 039067 23 PNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRADQ 102 (304)
Q Consensus 23 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~ 102 (304)
++|++|++++|+++.+....... +++|++|+++++ +++.+.+ ..+..+++|++|++++|. ++.++.. ..++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~lp~~-~l~~ 91 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILS-----LSKLRILIISHN-RIQYLDI-SVFKFNQELEYLDLSHNK-LVKISCH-PTVN 91 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTT-----CTTCCEEECCSS-CCCEEEG-GGGTTCTTCCEEECCSSC-CCEEECC-CCCC
T ss_pred ccccEEECCCCcccccChhhccc-----cccccEEecCCC-ccCCcCh-HHhhcccCCCEEecCCCc-eeecCcc-ccCC
Confidence 78888888888776654322222 788888888887 5666633 334678888888888884 6666655 4578
Q ss_pred cceeecccCccceecCCCcccCCCCccceeeeccc
Q 039067 103 LTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHC 137 (304)
Q Consensus 103 L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C 137 (304)
|++|+++++ .+++++.......+++|+.|+++++
T Consensus 92 L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 92 LKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp CSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred ccEEeccCC-ccccccchhhhccCCcceEEEecCc
Confidence 888888877 4554332222345677777777665
No 60
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.25 E-value=1.1e-10 Score=111.29 Aligned_cols=106 Identities=18% Similarity=0.160 Sum_probs=77.0
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRAD 101 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~ 101 (304)
+++|++|++++++++.+....... +++|++|+++++ +++.+++ ..+..+++|++|+++++. ++.++.. ..+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~-----l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~lp~~-~l~ 121 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISF-----LSELRVLRLSHN-RIRSLDF-HVFLFNQDLEYLDVSHNR-LQNISCC-PMA 121 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTT-----CTTCCEEECCSC-CCCEECT-TTTTTCTTCCEEECTTSC-CCEECSC-CCT
T ss_pred CCCcCEEECCCCCccccChhhhcc-----CCCccEEECCCC-CCCcCCH-HHhCCCCCCCEEECCCCc-CCccCcc-ccc
Confidence 478999999999877765433332 789999999887 6777744 334678899999999886 7777665 558
Q ss_pred ccceeecccCccceecCCCcccCCCCccceeeeccc
Q 039067 102 QLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHC 137 (304)
Q Consensus 102 ~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C 137 (304)
+|++|+++++ ++..++.......+++|+.|+++++
T Consensus 122 ~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 122 SLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp TCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred cCCEEECCCC-CccccCchHhhcccCcccEEecCCC
Confidence 8889988887 4666554223346788888888775
No 61
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=1.7e-11 Score=122.08 Aligned_cols=258 Identities=10% Similarity=0.091 Sum_probs=140.7
Q ss_pred cccCCccceeeecceeeee------------------ecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcc
Q 039067 19 KVALPNLEALEISEINVNK------------------IWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQL 80 (304)
Q Consensus 19 ~~~~~~L~~L~L~~~~l~~------------------~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L 80 (304)
...+++|+.|+|++++++. ++....... +++|++|++++|.-...+| ..+..+++|
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~----L~~L~~L~Ls~N~l~~~iP--~~l~~L~~L 517 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN----LKDLTDVELYNCPNMTQLP--DFLYDLPEL 517 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG----CTTCCEEEEESCTTCCSCC--GGGGGCSSC
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhcc----CCCCCEEECcCCCCCccCh--HHHhCCCCC
Confidence 4468999999999997766 333321001 8999999999986555553 335789999
Q ss_pred cEEeeccCccccc--hhcc--------cCCCccceeecccCccceecCCCcccCCCCccceeeeccccccccccc-CCCC
Q 039067 81 QHLDIRHCEDLQE--IISE--------NRADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA-DLSQ 149 (304)
Q Consensus 81 ~~L~i~~c~~l~~--l~~~--------~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~-~~~~ 149 (304)
++|++++|..+.. ++.. ...++|+.|+++++ ++..++.......+++|+.|+++++. ++.+|. ...+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~ 595 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNV 595 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTS
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCC-cccchhhcCCC
Confidence 9999999964543 3321 11268999999887 56666651123468899999999884 776662 2223
Q ss_pred CCCCCCCCCccccccc----ccccccc-eec-cccccceeeeeccchhcccccEEEeccccccccccc---cCccccccC
Q 039067 150 NNENDQLGIPEQQLLW----PLEKSLR-VTV-DHQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQA---DFPQHLFGS 220 (304)
Q Consensus 150 ~l~~~~~~~~~~~~l~----~~~~~l~-~~~-~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~~~l~~ 220 (304)
.++.+.++......+. .....++ +.. ...++.++... .....++|+.|++++|......+. .......++
T Consensus 596 ~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~-~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF-NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp EESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCC-CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred cceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhh-hccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 3444433333222111 1000000 000 00111111000 000112366666666654221110 000112235
Q ss_pred ccccc-ccCCCCcccchhhhhhccCccccccccccccceeecccccCcccccCCCCcC----CCCCCcccEEEEecCCCc
Q 039067 221 LKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIKELKLYRPYHLKQLGKQDSKL----GPIFQYLEILEVYYCARN 295 (304)
Q Consensus 221 L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~----~~~~~~L~~L~i~~C~~L 295 (304)
|+.|. ....+. .+|..+ +..+++|+.|+++++ +++.+....+.. ...+++|++|++++| ++
T Consensus 675 L~~L~Ls~N~L~-~lp~~~-----------~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L 740 (876)
T 4ecn_A 675 ASTVTLSYNEIQ-KFPTEL-----------FATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KL 740 (876)
T ss_dssp EEEEECCSSCCC-SCCHHH-----------HHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CC
T ss_pred cCEEEccCCcCC-ccCHHH-----------HccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CC
Confidence 55555 222233 344332 235789999999987 666665543221 113349999999998 56
Q ss_pred eecc
Q 039067 296 AESS 299 (304)
Q Consensus 296 ~~l~ 299 (304)
+.++
T Consensus 741 ~~lp 744 (876)
T 4ecn_A 741 TSLS 744 (876)
T ss_dssp CCCC
T ss_pred ccch
Confidence 6554
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.25 E-value=1.6e-11 Score=108.54 Aligned_cols=197 Identities=17% Similarity=0.113 Sum_probs=130.9
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCCccceeecccCccceecCCCcccCCCCccc
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRADQLTTLGLQYLPKLRCLYPGMHTSEWPALE 130 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~ 130 (304)
+++|++|+++++ ++..+++ ..+..+++|++|++++|. +..++.-...++|++|+++++ ++++++ ..++|+
T Consensus 33 ~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n-~l~~l~------~~~~L~ 102 (317)
T 3o53_A 33 AWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNN-YVQELL------VGPSIE 102 (317)
T ss_dssp GGGCSEEECTTS-CCCCCCH-HHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSS-EEEEEE------ECTTCC
T ss_pred CCCCCEEECcCC-ccCcCCH-HHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCC-cccccc------CCCCcC
Confidence 689999999997 7877744 445789999999999996 554444344489999999988 577665 248999
Q ss_pred eeeecccccccccccCCCCCCCCCCCCCcccccccccccccceeccccccceeeeeccchhcccccEEEecccccccccc
Q 039067 131 SLLVRHCDKLKIFAADLSQNNENDQLGIPEQQLLWPLEKSLRVTVDHQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQ 210 (304)
Q Consensus 131 ~L~l~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~ 210 (304)
.|+++++ +++.++....+.++.+.++......+.+. .-..+++|+.|++++|....+..
T Consensus 103 ~L~l~~n-~l~~~~~~~~~~L~~L~l~~N~l~~~~~~--------------------~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 103 TLHAANN-NISRVSCSRGQGKKNIYLANNKITMLRDL--------------------DEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp EEECCSS-CCSEEEECCCSSCEEEECCSSCCCSGGGB--------------------CTGGGSSEEEEECTTSCCCEEEG
T ss_pred EEECCCC-ccCCcCccccCCCCEEECCCCCCCCccch--------------------hhhccCCCCEEECCCCCCCcccH
Confidence 9999998 57777655444444444433332221110 11136789999999887644321
Q ss_pred ccCccccccCccccc-ccCCCCcccchhhhhhccCccccccccccccceeecccccCcccccCCCCcCCCCCCcccEEEE
Q 039067 211 ADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEV 289 (304)
Q Consensus 211 ~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i 289 (304)
.. ....+++|+.|. ....+... |. ...+++|++|+++++ +++.+... ...+++|++|++
T Consensus 162 ~~-~~~~l~~L~~L~L~~N~l~~~-~~-------------~~~l~~L~~L~Ls~N-~l~~l~~~----~~~l~~L~~L~L 221 (317)
T 3o53_A 162 AE-LAASSDTLEHLNLQYNFIYDV-KG-------------QVVFAKLKTLDLSSN-KLAFMGPE----FQSAAGVTWISL 221 (317)
T ss_dssp GG-GGGGTTTCCEEECTTSCCCEE-EC-------------CCCCTTCCEEECCSS-CCCEECGG----GGGGTTCSEEEC
T ss_pred HH-HhhccCcCCEEECCCCcCccc-cc-------------ccccccCCEEECCCC-cCCcchhh----hcccCcccEEEC
Confidence 11 123567788887 33333332 21 124789999999988 56666433 336799999999
Q ss_pred ecCCCceecc
Q 039067 290 YYCARNAESS 299 (304)
Q Consensus 290 ~~C~~L~~l~ 299 (304)
+++ +++.++
T Consensus 222 ~~N-~l~~l~ 230 (317)
T 3o53_A 222 RNN-KLVLIE 230 (317)
T ss_dssp TTS-CCCEEC
T ss_pred cCC-cccchh
Confidence 988 466654
No 63
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.25 E-value=4.1e-11 Score=105.82 Aligned_cols=241 Identities=18% Similarity=0.119 Sum_probs=114.6
Q ss_pred Cccceeeecceeeee---ecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCcccc-chhcc-
Q 039067 23 PNLEALEISEINVNK---IWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQ-EIISE- 97 (304)
Q Consensus 23 ~~L~~L~L~~~~l~~---~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~-~l~~~- 97 (304)
.+++.|+|+++++.. +...... +++|++|+++++..+....|.. +..+++|++|++++|. +. .++..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~------l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~-l~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN------LPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTN-VSGAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG------CTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEEC-CEEECCGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhC------CCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCe-eCCcCCHHH
Confidence 467777777776552 2222111 6777777777544555332322 3567777777777765 33 33322
Q ss_pred cCCCccceeecccCcccee-cCCCcccCCCCccceeeeccccccc-ccccC--CCC-CCCCCCCCCcccccccc-ccccc
Q 039067 98 NRADQLTTLGLQYLPKLRC-LYPGMHTSEWPALESLLVRHCDKLK-IFAAD--LSQ-NNENDQLGIPEQQLLWP-LEKSL 171 (304)
Q Consensus 98 ~~~~~L~~L~L~~c~~L~~-~~~~~~~~~l~~L~~L~l~~C~~L~-~l~~~--~~~-~l~~~~~~~~~~~~l~~-~~~~l 171 (304)
...++|++|+++++ .+.+ ++.. ...+++|+.|+++++. ++ .+|.. ... .++.+.++........+ .-+.+
T Consensus 122 ~~l~~L~~L~Ls~N-~l~~~~p~~--~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 122 SQIKTLVTLDFSYN-ALSGTLPPS--ISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp GGCTTCCEEECCSS-EEESCCCGG--GGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred hCCCCCCEEeCCCC-ccCCcCChH--HhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 12267777777766 3442 2221 2346777777777763 44 33331 111 23333332222111000 00000
Q ss_pred c---eecc-ccccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCcc
Q 039067 172 R---VTVD-HQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSL 246 (304)
Q Consensus 172 ~---~~~~-~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~ 246 (304)
. +... ..++... ...-..+++|+.|++++|....... ....+++|+.|. ....+....|.+
T Consensus 198 ~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~--------- 263 (313)
T 1ogq_A 198 NLAFVDLSRNMLEGDA--SVLFGSDKNTQKIHLAKNSLAFDLG---KVGLSKNLNGLDLRNNRIYGTLPQG--------- 263 (313)
T ss_dssp CCSEEECCSSEEEECC--GGGCCTTSCCSEEECCSSEECCBGG---GCCCCTTCCEEECCSSCCEECCCGG---------
T ss_pred cccEEECcCCcccCcC--CHHHhcCCCCCEEECCCCceeeecC---cccccCCCCEEECcCCcccCcCChH---------
Confidence 0 0000 0000000 0001125667777777665432211 123456666666 333333334432
Q ss_pred ccccccccccceeecccccCcc-cccCCCCcCCCCCCcccEEEEecCCCceec
Q 039067 247 EKHVGKLAMIKELKLYRPYHLK-QLGKQDSKLGPIFQYLEILEVYYCARNAES 298 (304)
Q Consensus 247 ~~~~~~l~~L~~L~l~~c~~L~-~i~~~~~~~~~~~~~L~~L~i~~C~~L~~l 298 (304)
+..+++|++|+++++. +. .++. ...+++|+.+++.+.+.+...
T Consensus 264 ---l~~l~~L~~L~Ls~N~-l~~~ip~-----~~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 264 ---LTQLKFLHSLNVSFNN-LCGEIPQ-----GGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp ---GGGCTTCCEEECCSSE-EEEECCC-----STTGGGSCGGGTCSSSEEEST
T ss_pred ---HhcCcCCCEEECcCCc-ccccCCC-----CccccccChHHhcCCCCccCC
Confidence 3357788888888773 33 3322 135677777777777766543
No 64
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.25 E-value=9.5e-11 Score=115.81 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=43.7
Q ss_pred cCCccceeeecceeee-eecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc--
Q 039067 21 ALPNLEALEISEINVN-KIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE-- 97 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~-~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~-- 97 (304)
.+++|++|++++|++. .++...... +++|++|++++| .+....|. .++.+++|++|++++|.-...++..
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~-----~~~L~~L~Ls~n-~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~ip~~~l 339 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGA-----CDTLTGLDLSGN-HFYGAVPP-FFGSCSLLESLALSSNNFSGELPMDTL 339 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTT-----CTTCSEEECCSS-EEEECCCG-GGGGCTTCCEEECCSSEEEEECCHHHH
T ss_pred ccCCCCEEECcCCccCCccCHHHHhh-----cCcCCEEECcCC-cCCCccch-HHhcCCCccEEECCCCcccCcCCHHHH
Confidence 4777778877777665 333222111 466777777666 33333222 2345666666666666422133321
Q ss_pred cCCCccceeecccC
Q 039067 98 NRADQLTTLGLQYL 111 (304)
Q Consensus 98 ~~~~~L~~L~L~~c 111 (304)
...++|++|+++++
T Consensus 340 ~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 340 LKMRGLKVLDLSFN 353 (768)
T ss_dssp TTCTTCCEEECCSS
T ss_pred hcCCCCCEEeCcCC
Confidence 12255555555555
No 65
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.24 E-value=3.6e-11 Score=106.22 Aligned_cols=219 Identities=14% Similarity=0.081 Sum_probs=122.4
Q ss_pred ccccCCccceeeecc-eeeee-ecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCcccc-ch
Q 039067 18 EKVALPNLEALEISE-INVNK-IWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQ-EI 94 (304)
Q Consensus 18 ~~~~~~~L~~L~L~~-~~l~~-~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~-~l 94 (304)
....+++|++|++++ +++.. ++..... +++|++|+++++ .+....|. .+..+++|++|++++|. +. .+
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~------l~~L~~L~Ls~n-~l~~~~p~-~~~~l~~L~~L~Ls~N~-l~~~~ 141 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAK------LTQLHYLYITHT-NVSGAIPD-FLSQIKTLVTLDFSYNA-LSGTL 141 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGG------CTTCSEEEEEEE-CCEEECCG-GGGGCTTCCEEECCSSE-EESCC
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhc------CCCCCEEECcCC-eeCCcCCH-HHhCCCCCCEEeCCCCc-cCCcC
Confidence 344589999999996 46553 3322211 789999999887 55533233 34678899999998886 44 33
Q ss_pred hcc-cCCCccceeecccCccce-ecCCCcccCCCC-ccceeeeccccccc-ccccC--CCCCCCCCCCCCccccccc---
Q 039067 95 ISE-NRADQLTTLGLQYLPKLR-CLYPGMHTSEWP-ALESLLVRHCDKLK-IFAAD--LSQNNENDQLGIPEQQLLW--- 165 (304)
Q Consensus 95 ~~~-~~~~~L~~L~L~~c~~L~-~~~~~~~~~~l~-~L~~L~l~~C~~L~-~l~~~--~~~~l~~~~~~~~~~~~l~--- 165 (304)
+.. ...++|++|+++++ .+. .++.. ...++ +|+.|+++++. ++ ..|.. .. .++.+.++........
T Consensus 142 p~~~~~l~~L~~L~L~~N-~l~~~~p~~--l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l-~L~~L~Ls~N~l~~~~~~~ 216 (313)
T 1ogq_A 142 PPSISSLPNLVGITFDGN-RISGAIPDS--YGSFSKLFTSMTISRNR-LTGKIPPTFANL-NLAFVDLSRNMLEGDASVL 216 (313)
T ss_dssp CGGGGGCTTCCEEECCSS-CCEEECCGG--GGCCCTTCCEEECCSSE-EEEECCGGGGGC-CCSEEECCSSEEEECCGGG
T ss_pred ChHHhcCCCCCeEECcCC-cccCcCCHH--HhhhhhcCcEEECcCCe-eeccCChHHhCC-cccEEECcCCcccCcCCHH
Confidence 322 22378888888887 454 34332 23455 78888888874 54 23321 11 1333333332222111
Q ss_pred -ccccccc-eeccc-cccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhh
Q 039067 166 -PLEKSLR-VTVDH-QLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFS 241 (304)
Q Consensus 166 -~~~~~l~-~~~~~-~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~ 241 (304)
.....++ +.... .++. .......+++|++|++++|......+ .....+++|+.|. ....+....|..
T Consensus 217 ~~~l~~L~~L~L~~N~l~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~ip~~---- 287 (313)
T 1ogq_A 217 FGSDKNTQKIHLAKNSLAF---DLGKVGLSKNLNGLDLRNNRIYGTLP--QGLTQLKFLHSLNVSFNNLCGEIPQG---- 287 (313)
T ss_dssp CCTTSCCSEEECCSSEECC---BGGGCCCCTTCCEEECCSSCCEECCC--GGGGGCTTCCEEECCSSEEEEECCCS----
T ss_pred HhcCCCCCEEECCCCceee---ecCcccccCCCCEEECcCCcccCcCC--hHHhcCcCCCEEECcCCcccccCCCC----
Confidence 0000000 00000 0100 00111236899999999998753322 1245678888888 433444445531
Q ss_pred ccCccccccccccccceeecccccCcc
Q 039067 242 EEGSLEKHVGKLAMIKELKLYRPYHLK 268 (304)
Q Consensus 242 l~~~~~~~~~~l~~L~~L~l~~c~~L~ 268 (304)
..+++|+.|++.+.+.+-
T Consensus 288 ---------~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 288 ---------GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp ---------TTGGGSCGGGTCSSSEEE
T ss_pred ---------ccccccChHHhcCCCCcc
Confidence 368899999999887554
No 66
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.24 E-value=2.1e-10 Score=114.49 Aligned_cols=62 Identities=18% Similarity=0.066 Sum_probs=33.5
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCc
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCE 89 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~ 89 (304)
.++|++|+|+++.++.+....... +++|++|++++|.....+++ ..++.+++|++|++++|.
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~-----l~~L~~LdLs~n~~~~~i~~-~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPF-----LEQLQLLELGSQYTPLTIDK-EAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSS-----CCSCSEEEECTTCCCCEECT-TTTSSCTTCCEEECTTCC
T ss_pred CCCcCEEECCCCcCCccChhHCcc-----cccCeEEeCCCCCCccccCH-HHhcCCCCCCEEECCCCc
Confidence 566777777777665554333222 56666666666544444422 223455566666665554
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.22 E-value=1.7e-10 Score=99.74 Aligned_cols=86 Identities=20% Similarity=0.250 Sum_probs=53.3
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCCccceeecccCccceecCCCcccCCCCccc
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRADQLTTLGLQYLPKLRCLYPGMHTSEWPALE 130 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~ 130 (304)
+++|+.|++.++ .++.++ ....+++|++|++++|. +..+..-...++|++|+++++ .++.++... ...+++|+
T Consensus 40 l~~L~~L~l~~~-~i~~~~---~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~ 112 (272)
T 3rfs_A 40 LNSIDQIIANNS-DIKSVQ---GIQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGN-QLQSLPNGV-FDKLTNLK 112 (272)
T ss_dssp HTTCCEEECTTS-CCCCCT---TGGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTS-CCCCCCTTT-TTTCTTCC
T ss_pred ccceeeeeeCCC-Cccccc---ccccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCC-ccCccChhH-hcCCcCCC
Confidence 677777777776 455552 23567777777777775 554433333477777777776 566555432 23567777
Q ss_pred eeeecccccccccc
Q 039067 131 SLLVRHCDKLKIFA 144 (304)
Q Consensus 131 ~L~l~~C~~L~~l~ 144 (304)
.|++++| +++.++
T Consensus 113 ~L~L~~n-~l~~~~ 125 (272)
T 3rfs_A 113 ELVLVEN-QLQSLP 125 (272)
T ss_dssp EEECTTS-CCCCCC
T ss_pred EEECCCC-cCCccC
Confidence 7777777 365544
No 68
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.22 E-value=1.2e-10 Score=113.14 Aligned_cols=113 Identities=19% Similarity=0.174 Sum_probs=85.5
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc--cC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE--NR 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~ 99 (304)
.++|++|++++++++.+....... +++|++|+++++ .+..+.+ ..+..+++|++|++++|. +..++.. ..
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~ 95 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTR-----YSQLTSLDVGFN-TISKLEP-ELCQKLPMLKVLNLQHNE-LSQLSDKTFAF 95 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGG-----GTTCSEEECCSS-CCCCCCT-THHHHCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCCcEEECCCCCCCCcCHHHHhC-----CCcCcEEECCCC-ccCccCH-HHHhcccCcCEEECCCCc-cCccChhhhcc
Confidence 378999999999888766543332 899999999987 6777744 345789999999999995 7766653 23
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeeccccccccccc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 145 (304)
.++|++|+++++ ++..++... ...+++|++|++++| +++..+.
T Consensus 96 l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~ 138 (680)
T 1ziw_A 96 CTNLTELHLMSN-SIQKIKNNP-FVKQKNLITLDLSHN-GLSSTKL 138 (680)
T ss_dssp CTTCSEEECCSS-CCCCCCSCT-TTTCTTCCEEECCSS-CCSCCCC
T ss_pred CCCCCEEECCCC-ccCccChhH-ccccCCCCEEECCCC-cccccCc
Confidence 489999999988 567666432 246899999999998 4665543
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.21 E-value=7.6e-11 Score=105.68 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=87.9
Q ss_pred cccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhc-c
Q 039067 19 KVALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIIS-E 97 (304)
Q Consensus 19 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~-~ 97 (304)
...+++|++|++++++++.+....... +++|++|+++++ +++.++ ......+++|++|+++++. +..++. .
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~l~~~~ 143 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSS-----LGSLEHLDLSYN-YLSNLS-SSWFKPLSSLTFLNLLGNP-YKTLGETS 143 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTT-----CTTCCEEECCSS-CCSSCC-HHHHTTCTTCSEEECTTCC-CSSSCSSC
T ss_pred hccCCCCCEEECCCCccCccCHhhcCC-----CCCCCEEECCCC-cCCcCC-HhHhCCCccCCEEECCCCC-CcccCchh
Confidence 345899999999999888765443332 899999999997 678774 3445789999999999995 666654 2
Q ss_pred --cCCCccceeecccCccceecCCCcccCCCCccceeeeccccccccc
Q 039067 98 --NRADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIF 143 (304)
Q Consensus 98 --~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l 143 (304)
...++|++|+++++..+..++... ...+++|+.|+++++. ++..
T Consensus 144 ~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~ 189 (353)
T 2z80_A 144 LFSHLTKLQILRVGNMDTFTKIQRKD-FAGLTFLEELEIDASD-LQSY 189 (353)
T ss_dssp SCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETT-CCEE
T ss_pred hhccCCCCcEEECCCCccccccCHHH-ccCCCCCCEEECCCCC-cCcc
Confidence 224899999999987777776543 2368999999999984 6655
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.21 E-value=7.1e-11 Score=111.87 Aligned_cols=223 Identities=16% Similarity=0.196 Sum_probs=133.8
Q ss_pred ccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc--
Q 039067 20 VALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE-- 97 (304)
Q Consensus 20 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~-- 97 (304)
..+++|+.|.+.++.+...............+.+|++|+++++ ++..+ |..+.+.+++|++|++++|.--..++..
T Consensus 278 ~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~i-p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 355 (549)
T 2z81_A 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLV-PCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355 (549)
T ss_dssp CCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCC-CHHHHHHCTTCCEEECCSSCCCHHHHHHHT
T ss_pred hhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC-ccccC-CHHHHhcCccccEEEccCCccccccccchh
Confidence 4578899998888855442211100000001578888999886 57766 4444457888999999888633223211
Q ss_pred --cCCCccceeecccCccceecCC-CcccCCCCccceeeecccccccccccC--CCCCCCCCCCCCcccccccccccccc
Q 039067 98 --NRADQLTTLGLQYLPKLRCLYP-GMHTSEWPALESLLVRHCDKLKIFAAD--LSQNNENDQLGIPEQQLLWPLEKSLR 172 (304)
Q Consensus 98 --~~~~~L~~L~L~~c~~L~~~~~-~~~~~~l~~L~~L~l~~C~~L~~l~~~--~~~~l~~~~~~~~~~~~l~~~~~~l~ 172 (304)
...++|++|+++++ ++++++. +.....+++|+.|++++| +++.+|.. ....++.+.++......+.
T Consensus 356 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~------- 426 (549)
T 2z81_A 356 CKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVK------- 426 (549)
T ss_dssp CTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSCCSCCC-------
T ss_pred hhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCCccccc-------
Confidence 22378888888887 5655542 112345788888888888 57777652 2223443333332221111
Q ss_pred eeccccccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCccccccc
Q 039067 173 VTVDHQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVG 251 (304)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~ 251 (304)
...+++|+.|++++|..... ...+++|+.|. ....+. .+|.. .
T Consensus 427 ----------------~~~~~~L~~L~Ls~N~l~~~------~~~l~~L~~L~Ls~N~l~-~ip~~-------------~ 470 (549)
T 2z81_A 427 ----------------TCIPQTLEVLDVSNNNLDSF------SLFLPRLQELYISRNKLK-TLPDA-------------S 470 (549)
T ss_dssp ----------------TTSCTTCSEEECCSSCCSCC------CCCCTTCCEEECCSSCCS-SCCCG-------------G
T ss_pred ----------------chhcCCceEEECCCCChhhh------cccCChhcEEECCCCccC-cCCCc-------------c
Confidence 11246888888888865432 24677888887 333343 34421 2
Q ss_pred cccccceeecccccCcccccCCCCcCCCCCCcccEEEEecCC
Q 039067 252 KLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCA 293 (304)
Q Consensus 252 ~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~ 293 (304)
.+++|++|+++++ +++.+..+.+. .+++|++|++.+++
T Consensus 471 ~l~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 471 LFPVLLVMKISRN-QLKSVPDGIFD---RLTSLQKIWLHTNP 508 (549)
T ss_dssp GCTTCCEEECCSS-CCCCCCTTGGG---GCTTCCEEECCSSC
T ss_pred cCccCCEEecCCC-ccCCcCHHHHh---cCcccCEEEecCCC
Confidence 4678888888887 56666555443 67888888888776
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.19 E-value=2.6e-10 Score=98.58 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=85.3
Q ss_pred ccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc--
Q 039067 20 VALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE-- 97 (304)
Q Consensus 20 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~-- 97 (304)
..+++|++|+++++++..+....... +++|++|+++++ .+..+++ ..+..+++|++|++++|. +..+...
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 120 (276)
T 2z62_A 49 FSFPELQVLDLSRCEIQTIEDGAYQS-----LSHLSTLILTGN-PIQSLAL-GAFSGLSSLQKLVAVETN-LASLENFPI 120 (276)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTT-----CTTCCEEECTTC-CCCEECT-TTTTTCTTCCEEECTTSC-CCCSTTCCC
T ss_pred ccccCCcEEECCCCcCCccCHHHccC-----CcCCCEEECCCC-ccCccCh-hhhcCCccccEEECCCCC-ccccCchhc
Confidence 45899999999999888776543333 899999999997 6777743 345689999999999986 5555432
Q ss_pred cCCCccceeecccCccceecCCCcccCCCCccceeeecccccccccc
Q 039067 98 NRADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFA 144 (304)
Q Consensus 98 ~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 144 (304)
...++|++|+++++ .++.+........+++|+.|+++++ +++.++
T Consensus 121 ~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~ 165 (276)
T 2z62_A 121 GHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIY 165 (276)
T ss_dssp TTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEEC
T ss_pred ccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCC
Confidence 22389999999987 5665432223346899999999998 476654
No 72
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.19 E-value=4.3e-10 Score=104.44 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=25.6
Q ss_pred ccccceeecccccCcccccCCCCcCCCCCCcccEEEEecCCCcee
Q 039067 253 LAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYYCARNAE 297 (304)
Q Consensus 253 l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~C~~L~~ 297 (304)
+++|++|+++++ +++.+.. .+++|++|+++++. ++.
T Consensus 336 ~~~L~~L~L~~N-~l~~lp~-------~l~~L~~L~L~~N~-l~~ 371 (454)
T 1jl5_A 336 PPRLERLIASFN-HLAEVPE-------LPQNLKQLHVEYNP-LRE 371 (454)
T ss_dssp CTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSSC-CSS
T ss_pred CCcCCEEECCCC-ccccccc-------hhhhccEEECCCCC-CCc
Confidence 578888888877 5665532 35889999998875 444
No 73
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.19 E-value=1.4e-10 Score=101.38 Aligned_cols=106 Identities=20% Similarity=0.253 Sum_probs=73.6
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCC
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRA 100 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 100 (304)
.+++|+.|.++++++..+.. ... +++|++|++++| ++..+++ ...+++|++|++++|. +..++.-...
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~--~~~-----l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~l~~l 111 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG--IQY-----LPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDENK-VKDLSSLKDL 111 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT--GGG-----CTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCGGGGTTC
T ss_pred hcCcccEEEccCCCcccChh--Hhc-----CCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCCc-CCCChhhccC
Confidence 47788888888887766532 111 788888888886 6777643 4678888888888885 6665544444
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeeccccccccc
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIF 143 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l 143 (304)
++|+.|+++++ +++.++. ...+++|+.|++++| +++.+
T Consensus 112 ~~L~~L~L~~n-~i~~~~~---l~~l~~L~~L~l~~n-~l~~~ 149 (291)
T 1h6t_A 112 KKLKSLSLEHN-GISDING---LVHLPQLESLYLGNN-KITDI 149 (291)
T ss_dssp TTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSS-CCCCC
T ss_pred CCCCEEECCCC-cCCCChh---hcCCCCCCEEEccCC-cCCcc
Confidence 78888888877 5665532 235788888888887 35544
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.18 E-value=1.5e-10 Score=101.98 Aligned_cols=199 Identities=14% Similarity=0.025 Sum_probs=103.6
Q ss_pred CCCccEEeeccCcccccccchhhh-hcCCcccEEeeccCccccchhc------ccCCCccceeecccCccceecCCCccc
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMI-GSLKQLQHLDIRHCEDLQEIIS------ENRADQLTTLGLQYLPKLRCLYPGMHT 123 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~-~~l~~L~~L~i~~c~~l~~l~~------~~~~~~L~~L~L~~c~~L~~~~~~~~~ 123 (304)
+++|++|++++| ++....+..++ ..+++|++|++++|. +..... ....++|++|+++++ .+..++... .
T Consensus 90 ~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~-~ 165 (310)
T 4glp_A 90 YSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQ-V 165 (310)
T ss_dssp HSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTS-C
T ss_pred cCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHH-h
Confidence 455777777766 34433333222 456677777777765 332100 012367777777666 344444332 2
Q ss_pred CCCCccceeeecccccccc---ccc----CCCCCCCCCCCCCcccccccccccccceeccccccceeeeec-cchhcccc
Q 039067 124 SEWPALESLLVRHCDKLKI---FAA----DLSQNNENDQLGIPEQQLLWPLEKSLRVTVDHQLTSLVIMID-DDQIVSNF 195 (304)
Q Consensus 124 ~~l~~L~~L~l~~C~~L~~---l~~----~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~-~~~~~~~L 195 (304)
..+++|+.|+++++. +.. ++. ...+.++.+.++......+.. ... ....+++|
T Consensus 166 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~------------------~~~~l~~~l~~L 226 (310)
T 4glp_A 166 RAFPALTSLDLSDNP-GLGERGLMAALCPHKFPAIQNLALRNTGMETPTG------------------VCAALAAAGVQP 226 (310)
T ss_dssp CCCTTCCEEECCSCT-TCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH------------------HHHHHHHHTCCC
T ss_pred ccCCCCCEEECCCCC-CccchhhhHHHhhhcCCCCCEEECCCCCCCchHH------------------HHHHHHhcCCCC
Confidence 346677777777764 221 111 122234443333322211100 000 00135899
Q ss_pred cEEEecccccccccccc-CccccccCccccc-ccCCCCcccchhhhhhccCccccccccccccceeecccccCcccccCC
Q 039067 196 KELSLSGKDVKMILQAD-FPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIKELKLYRPYHLKQLGKQ 273 (304)
Q Consensus 196 ~~L~l~~c~~~~~~~~~-~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~ 273 (304)
++|++++|......+.. .....+++|+.|. ....+. .+|.. .+++|++|+++++ +++.+..
T Consensus 227 ~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~--------------~~~~L~~L~Ls~N-~l~~~~~- 289 (310)
T 4glp_A 227 HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKG--------------LPAKLRVLDLSSN-RLNRAPQ- 289 (310)
T ss_dssp SSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSC--------------CCSCCSCEECCSC-CCCSCCC-
T ss_pred CEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhh--------------hcCCCCEEECCCC-cCCCCch-
Confidence 99999998864432111 1112236888888 444444 34531 2378999999987 5665422
Q ss_pred CCcCCCCCCcccEEEEecCC
Q 039067 274 DSKLGPIFQYLEILEVYYCA 293 (304)
Q Consensus 274 ~~~~~~~~~~L~~L~i~~C~ 293 (304)
...+++|++|++.+.+
T Consensus 290 ----~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 290 ----PDELPEVDNLTLDGNP 305 (310)
T ss_dssp ----TTSCCCCSCEECSSTT
T ss_pred ----hhhCCCccEEECcCCC
Confidence 2367899999988765
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.17 E-value=4.8e-10 Score=97.92 Aligned_cols=111 Identities=24% Similarity=0.297 Sum_probs=84.9
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc-CC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN-RA 100 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~-~~ 100 (304)
.++++.|+|+++++..+....... +++|++|+++++ .+..+++. ..+++|++|+++++. +..++... ..
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~~~~~~---~~l~~L~~L~Ls~N~-l~~l~~~~~~l 99 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMP-----YTRLTQLNLDRA-ELTKLQVD---GTLPVLGTLDLSHNQ-LQSLPLLGQTL 99 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTT-----CTTCCEEECTTS-CCCEEECC---SCCTTCCEEECCSSC-CSSCCCCTTTC
T ss_pred CCCCCEEEcCCCcCCccCHHHhhc-----CCCCCEEECCCC-ccCcccCC---CCCCcCCEEECCCCc-CCcCchhhccC
Confidence 578999999999887765443333 899999999987 67777443 678999999999985 66665432 23
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeeccccccccccc
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 145 (304)
++|+.|+++++ +++.++.... ..+++|+.|+++++ +++.++.
T Consensus 100 ~~L~~L~l~~N-~l~~l~~~~~-~~l~~L~~L~L~~N-~l~~~~~ 141 (290)
T 1p9a_G 100 PALTVLDVSFN-RLTSLPLGAL-RGLGELQELYLKGN-ELKTLPP 141 (290)
T ss_dssp TTCCEEECCSS-CCCCCCSSTT-TTCTTCCEEECTTS-CCCCCCT
T ss_pred CCCCEEECCCC-cCcccCHHHH-cCCCCCCEEECCCC-CCCccCh
Confidence 89999999987 6777765432 36899999999998 5877765
No 76
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.15 E-value=5.4e-10 Score=100.15 Aligned_cols=118 Identities=17% Similarity=0.136 Sum_probs=85.4
Q ss_pred ccCCccceeeecceee-eeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc
Q 039067 20 VALPNLEALEISEINV-NKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN 98 (304)
Q Consensus 20 ~~~~~L~~L~L~~~~l-~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~ 98 (304)
..+++|++|+|++|++ +.+....+.+ +++|+++.+.++.+++.+++ .....+++|++|+++++. +..++...
T Consensus 51 ~~l~~L~~L~Ls~N~i~~~i~~~~f~~-----L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n~-l~~~~~~~ 123 (350)
T 4ay9_X 51 SGFGDLEKIEISQNDVLEVIEADVFSN-----LPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTG-IKHLPDVH 123 (350)
T ss_dssp TTCTTCCEEEEECCTTCCEECTTSBCS-----CTTCCEEEEEEETTCCEECT-TSBCCCTTCCEEEEEEEC-CSSCCCCT
T ss_pred cCCCCCCEEECcCCCCCCccChhHhhc-----chhhhhhhcccCCcccccCc-hhhhhccccccccccccc-cccCCchh
Confidence 3589999999999965 4455443333 78888887777888998854 445789999999999985 66555432
Q ss_pred C--CCccceeecccCccceecCCCcccCCCCccceeeeccccccccccc
Q 039067 99 R--ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 99 ~--~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 145 (304)
. ..++..|++.++.++..++..........++.|.++++ +++.++.
T Consensus 124 ~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~ 171 (350)
T 4ay9_X 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHN 171 (350)
T ss_dssp TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECT
T ss_pred hcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCCh
Confidence 2 25677888888888888887654333456888898887 4777664
No 77
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.14 E-value=2.3e-10 Score=109.98 Aligned_cols=106 Identities=20% Similarity=0.278 Sum_probs=75.1
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCC
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRA 100 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 100 (304)
.+++|+.|.++++++..+.. ... +++|+.|+|++| .+..+++ ...+++|++|++++|. +..++.-...
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~---l~~----l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~~l~~l 108 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQG---IQY----LPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDENK-IKDLSSLKDL 108 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTT---GGG----CTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSSC-CCCCTTSTTC
T ss_pred cCCCCCEEECcCCCCCCChH---Hcc----CCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCCC-CCCChhhccC
Confidence 47888888888887766532 111 788999999887 6777744 4678899999998885 6655543444
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeeccccccccc
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIF 143 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l 143 (304)
++|+.|+|+++ .+..++. ...+++|+.|++++| +++.+
T Consensus 109 ~~L~~L~Ls~N-~l~~l~~---l~~l~~L~~L~Ls~N-~l~~l 146 (605)
T 1m9s_A 109 KKLKSLSLEHN-GISDING---LVHLPQLESLYLGNN-KITDI 146 (605)
T ss_dssp TTCCEEECTTS-CCCCCGG---GGGCTTCSEEECCSS-CCCCC
T ss_pred CCCCEEEecCC-CCCCCcc---ccCCCccCEEECCCC-ccCCc
Confidence 88888888887 4555532 346788888888887 36544
No 78
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.13 E-value=4.8e-10 Score=97.92 Aligned_cols=166 Identities=19% Similarity=0.213 Sum_probs=106.6
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCCccceeecccCccceecCCCcccCCCCccc
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRADQLTTLGLQYLPKLRCLYPGMHTSEWPALE 130 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~ 130 (304)
+++|+.|++++| .++.++. ...+++|++|++++|. +..+..-...++|+.|+++++ .++.++. ...+++|+
T Consensus 45 l~~L~~L~l~~~-~i~~~~~---~~~l~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~ 115 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDEN-KVKDLSS---LKDLKKLK 115 (291)
T ss_dssp HHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCGGG---GTTCTTCC
T ss_pred cCcccEEEccCC-CcccChh---HhcCCCCCEEEccCCc-cCCCcccccCCCCCEEECCCC-cCCCChh---hccCCCCC
Confidence 799999999998 6777732 4678999999999995 666654344589999999987 5666553 34689999
Q ss_pred eeeecccccccccccCCCCCCCCCCCCCcccccccccccccceeccccccceeeeeccchhcccccEEEecccccccccc
Q 039067 131 SLLVRHCDKLKIFAADLSQNNENDQLGIPEQQLLWPLEKSLRVTVDHQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQ 210 (304)
Q Consensus 131 ~L~l~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~ 210 (304)
.|++++| +++.++. ...+++|+.|++++|....+
T Consensus 116 ~L~L~~n-~i~~~~~-------------------------------------------l~~l~~L~~L~l~~n~l~~~-- 149 (291)
T 1h6t_A 116 SLSLEHN-GISDING-------------------------------------------LVHLPQLESLYLGNNKITDI-- 149 (291)
T ss_dssp EEECTTS-CCCCCGG-------------------------------------------GGGCTTCCEEECCSSCCCCC--
T ss_pred EEECCCC-cCCCChh-------------------------------------------hcCCCCCCEEEccCCcCCcc--
Confidence 9999998 4665531 01256666777766654333
Q ss_pred ccCccccccCccccc-ccCCCCcccchhhhhhccCccccccccccccceeecccccCcccccCCCCcCCCCCCcccEEEE
Q 039067 211 ADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEV 289 (304)
Q Consensus 211 ~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i 289 (304)
.....+++|+.|. ....+....| +..+++|++|+++++ .++.+.. ...+++|+.|++
T Consensus 150 --~~l~~l~~L~~L~L~~N~l~~~~~--------------l~~l~~L~~L~L~~N-~i~~l~~-----l~~l~~L~~L~l 207 (291)
T 1h6t_A 150 --TVLSRLTKLDTLSLEDNQISDIVP--------------LAGLTKLQNLYLSKN-HISDLRA-----LAGLKNLDVLEL 207 (291)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--------------GTTCTTCCEEECCSS-CCCBCGG-----GTTCTTCSEEEE
T ss_pred --hhhccCCCCCEEEccCCccccchh--------------hcCCCccCEEECCCC-cCCCChh-----hccCCCCCEEEC
Confidence 1234556666665 2222332222 234666777777665 3444311 235666777776
Q ss_pred ecCC
Q 039067 290 YYCA 293 (304)
Q Consensus 290 ~~C~ 293 (304)
.+++
T Consensus 208 ~~n~ 211 (291)
T 1h6t_A 208 FSQE 211 (291)
T ss_dssp EEEE
T ss_pred cCCc
Confidence 6653
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.11 E-value=1.8e-09 Score=101.57 Aligned_cols=195 Identities=12% Similarity=0.076 Sum_probs=98.4
Q ss_pred CCCccEEeeccCcccccccchhhhhcC---CcccEEeeccCccccchhcccCCCccceeecccCccceecCCCcccCCCC
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSL---KQLQHLDIRHCEDLQEIISENRADQLTTLGLQYLPKLRCLYPGMHTSEWP 127 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l---~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~ 127 (304)
+++|+.++++++. + .++... +..+ ++|++|++++|. +..+......++|++|+++++ ++.+.... ....++
T Consensus 275 l~~L~~l~l~~n~-~-~~p~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~ 348 (520)
T 2z7x_B 275 LKALSIHQVVSDV-F-GFPQSY-IYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNN-LLTDTVFE-NCGHLT 348 (520)
T ss_dssp CCEEEEEEEEECC-C-CSCTHH-HHHHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSS-CCCTTTTT-TCCCCS
T ss_pred CceeEeccccccc-e-ecchhh-hhcccccCceeEEEcCCCc-cccccchhhCCcccEEEeECC-ccChhhhh-hhccCC
Confidence 5555555555542 2 332111 1122 446666666664 332221122367777777766 34442211 123567
Q ss_pred ccceeeeccccccccccc-----CCCCCCCCCCCCCcccccccccccccceeccccccceeeeeccchhcccccEEEecc
Q 039067 128 ALESLLVRHCDKLKIFAA-----DLSQNNENDQLGIPEQQLLWPLEKSLRVTVDHQLTSLVIMIDDDQIVSNFKELSLSG 202 (304)
Q Consensus 128 ~L~~L~l~~C~~L~~l~~-----~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 202 (304)
+|+.|++++| +++.++. ...+.++.+.++........+ .. .-..+++|+.|++++
T Consensus 349 ~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~-----------------~~--~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 349 ELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK-----------------KG--DCSWTKSLLSLNMSS 408 (520)
T ss_dssp SCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG-----------------GC--SCCCCTTCCEEECCS
T ss_pred CCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccc-----------------cc--hhccCccCCEEECcC
Confidence 7777777776 3553321 222333333333222211000 00 001246777777777
Q ss_pred ccccccccccCccccc-cCccccc-ccCCCCcccchhhhhhccCccccccccccccceeecccccCcccccCCCCcCCCC
Q 039067 203 KDVKMILQADFPQHLF-GSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPI 280 (304)
Q Consensus 203 c~~~~~~~~~~~~~~l-~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~ 280 (304)
|...... +..+ ++|+.|. ....+. .+|.. +..+++|++|+++++ +++.+....+ ..
T Consensus 409 N~l~~~~-----~~~l~~~L~~L~Ls~N~l~-~ip~~------------~~~l~~L~~L~L~~N-~l~~l~~~~~---~~ 466 (520)
T 2z7x_B 409 NILTDTI-----FRCLPPRIKVLDLHSNKIK-SIPKQ------------VVKLEALQELNVASN-QLKSVPDGIF---DR 466 (520)
T ss_dssp SCCCGGG-----GGSCCTTCCEEECCSSCCC-CCCGG------------GGGCTTCCEEECCSS-CCCCCCTTTT---TT
T ss_pred CCCCcch-----hhhhcccCCEEECCCCccc-ccchh------------hhcCCCCCEEECCCC-cCCccCHHHh---cc
Confidence 7653221 1122 5666666 322333 34432 226889999999988 6777755432 36
Q ss_pred CCcccEEEEecCC
Q 039067 281 FQYLEILEVYYCA 293 (304)
Q Consensus 281 ~~~L~~L~i~~C~ 293 (304)
+++|++|++.+++
T Consensus 467 l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 467 LTSLQKIWLHTNP 479 (520)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCcccEEECcCCC
Confidence 8899999998876
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.11 E-value=2.7e-10 Score=100.43 Aligned_cols=200 Identities=13% Similarity=-0.012 Sum_probs=99.8
Q ss_pred CCCccEEeeccCcccccccchhh-hhcCCcccEEeeccCccccchhcccC------CCccceeecccCccceecCCCccc
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASM-IGSLKQLQHLDIRHCEDLQEIISENR------ADQLTTLGLQYLPKLRCLYPGMHT 123 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~-~~~l~~L~~L~i~~c~~l~~l~~~~~------~~~L~~L~L~~c~~L~~~~~~~~~ 123 (304)
+++|++|++++| ++....|..+ ...+++|++|+++++. +..++.... .++|++|+++++ ++..++... .
T Consensus 94 l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~-~ 169 (312)
T 1wwl_A 94 ISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQ-V 169 (312)
T ss_dssp TSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTT-C
T ss_pred cCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHH-h
Confidence 566666666665 3442222222 2456666666666664 433321100 156666666665 345444322 2
Q ss_pred CCCCccceeeecccccccc--ccc----CCCCCCCCCCCCCcccccccccccccceeccccccceeeeeccchhcccccE
Q 039067 124 SEWPALESLLVRHCDKLKI--FAA----DLSQNNENDQLGIPEQQLLWPLEKSLRVTVDHQLTSLVIMIDDDQIVSNFKE 197 (304)
Q Consensus 124 ~~l~~L~~L~l~~C~~L~~--l~~----~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~L~~ 197 (304)
..+++|+.|+++++.-... ++. ...+.++.+.++......+.. .. ......+++|+.
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------~~--~~~~~~l~~L~~ 232 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG---------------VC--SALAAARVQLQG 232 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH---------------HH--HHHHHTTCCCSE
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH---------------HH--HHHHhcCCCCCE
Confidence 3466666666666631111 110 111222222222221110000 00 000012578999
Q ss_pred EEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCccccccccccccceeecccccCcccccCCCCc
Q 039067 198 LSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIKELKLYRPYHLKQLGKQDSK 276 (304)
Q Consensus 198 L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~ 276 (304)
|++++|......+. .....+++|+.|. ....+. .+|.. ..++|++|+++++ +++.+..
T Consensus 233 L~Ls~N~l~~~~~~-~~~~~l~~L~~L~Ls~N~l~-~ip~~--------------~~~~L~~L~Ls~N-~l~~~p~---- 291 (312)
T 1wwl_A 233 LDLSHNSLRDAAGA-PSCDWPSQLNSLNLSFTGLK-QVPKG--------------LPAKLSVLDLSYN-RLDRNPS---- 291 (312)
T ss_dssp EECTTSCCCSSCCC-SCCCCCTTCCEEECTTSCCS-SCCSS--------------CCSEEEEEECCSS-CCCSCCC----
T ss_pred EECCCCcCCcccch-hhhhhcCCCCEEECCCCccC-hhhhh--------------ccCCceEEECCCC-CCCCChh----
Confidence 99998876443210 1134467788887 333343 34431 1278999999987 5666522
Q ss_pred CCCCCCcccEEEEecCC
Q 039067 277 LGPIFQYLEILEVYYCA 293 (304)
Q Consensus 277 ~~~~~~~L~~L~i~~C~ 293 (304)
...+++|++|++++.+
T Consensus 292 -~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 292 -PDELPQVGNLSLKGNP 307 (312)
T ss_dssp -TTTSCEEEEEECTTCT
T ss_pred -HhhCCCCCEEeccCCC
Confidence 2378889999888764
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.11 E-value=4.2e-10 Score=105.47 Aligned_cols=197 Identities=17% Similarity=0.115 Sum_probs=130.6
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCCccceeecccCccceecCCCcccCCCCccc
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRADQLTTLGLQYLPKLRCLYPGMHTSEWPALE 130 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~ 130 (304)
+++|++|+++++ .+..+++ ..+..+++|++|++++|. +..++.-...++|++|+++++ .+.+++. .++|+
T Consensus 33 ~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N-~l~~l~~------~~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNN-YVQELLV------GPSIE 102 (487)
T ss_dssp GGGCCEEECCSS-CCCCCCG-GGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSS-EEEEEEE------CTTCC
T ss_pred CCCccEEEeeCC-cCCCCCH-HHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCC-cCCCCCC------CCCcC
Confidence 569999999997 6777744 345789999999999996 654443334489999999998 6776653 38999
Q ss_pred eeeecccccccccccCCCCCCCCCCCCCcccccccccccccceeccccccceeeeeccchhcccccEEEecccccccccc
Q 039067 131 SLLVRHCDKLKIFAADLSQNNENDQLGIPEQQLLWPLEKSLRVTVDHQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQ 210 (304)
Q Consensus 131 ~L~l~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~ 210 (304)
.|++++| +++.++....+.++.+.++......+.+. .-..+++|+.|++++|.......
T Consensus 103 ~L~L~~N-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 103 TLHAANN-NISRVSCSRGQGKKNIYLANNKITMLRDL--------------------DEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp EEECCSS-CCCCEEECCCSSCEEEECCSSCCCSGGGB--------------------CGGGGSSEEEEECTTSCCCEEEG
T ss_pred EEECcCC-cCCCCCccccCCCCEEECCCCCCCCCCch--------------------hhcCCCCCCEEECCCCCCCCcCh
Confidence 9999998 58777655444444444433332222110 11136789999999887644321
Q ss_pred ccCccccccCccccc-ccCCCCcccchhhhhhccCccccccccccccceeecccccCcccccCCCCcCCCCCCcccEEEE
Q 039067 211 ADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEV 289 (304)
Q Consensus 211 ~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i 289 (304)
..+ ...+++|+.|. ....+... |. ...+++|+.|+++++ .++.+... ...+++|+.|++
T Consensus 162 ~~l-~~~l~~L~~L~Ls~N~l~~~-~~-------------~~~l~~L~~L~Ls~N-~l~~~~~~----~~~l~~L~~L~L 221 (487)
T 3oja_A 162 AEL-AASSDTLEHLNLQYNFIYDV-KG-------------QVVFAKLKTLDLSSN-KLAFMGPE----FQSAAGVTWISL 221 (487)
T ss_dssp GGG-GGGTTTCCEEECTTSCCCEE-EC-------------CCCCTTCCEEECCSS-CCCEECGG----GGGGTTCSEEEC
T ss_pred HHH-hhhCCcccEEecCCCccccc-cc-------------cccCCCCCEEECCCC-CCCCCCHh----HcCCCCccEEEe
Confidence 111 23567888887 33334332 21 224789999999987 56666433 336799999999
Q ss_pred ecCCCceecc
Q 039067 290 YYCARNAESS 299 (304)
Q Consensus 290 ~~C~~L~~l~ 299 (304)
+++. ++.++
T Consensus 222 s~N~-l~~lp 230 (487)
T 3oja_A 222 RNNK-LVLIE 230 (487)
T ss_dssp TTSC-CCEEC
T ss_pred cCCc-Ccccc
Confidence 8874 55544
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.10 E-value=1.4e-09 Score=92.67 Aligned_cols=150 Identities=19% Similarity=0.216 Sum_probs=99.3
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--C
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--R 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~ 99 (304)
.++|+.|+|+++++..+....... +++|++|+++++ .+..+++ .....+++|++|+++++. +..++... .
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 105 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRG-----LTKLTWLNLDYN-QLQTLSA-GVFDDLTELGTLGLANNQ-LASLPLGVFDH 105 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTT-----CTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred CCCCCEEEccCCCcCccCHhHhcC-----cccCCEEECCCC-cCCccCH-hHhccCCcCCEEECCCCc-ccccChhHhcc
Confidence 467888888888777655443332 788888888886 6776643 334678888888888885 65554332 2
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCCCCCCCCCCCcccccccccccccceeccccc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQNNENDQLGIPEQQLLWPLEKSLRVTVDHQL 179 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~l 179 (304)
.++|++|+++++ +++.++... ...+++|+.|+++++ +++.++...
T Consensus 106 l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~-------------------------------- 150 (251)
T 3m19_A 106 LTQLDKLYLGGN-QLKSLPSGV-FDRLTKLKELRLNTN-QLQSIPAGA-------------------------------- 150 (251)
T ss_dssp CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTT--------------------------------
T ss_pred cCCCCEEEcCCC-cCCCcChhH-hccCCcccEEECcCC-cCCccCHHH--------------------------------
Confidence 378888888877 677666543 135788888888887 476555311
Q ss_pred cceeeeeccchhcccccEEEeccccccccccccCccccccCccccc
Q 039067 180 TSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE 225 (304)
Q Consensus 180 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~ 225 (304)
-..+++|+.|++++|....+.. .....+++|+.|.
T Consensus 151 ---------~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~ 185 (251)
T 3m19_A 151 ---------FDKLTNLQTLSLSTNQLQSVPH--GAFDRLGKLQTIT 185 (251)
T ss_dssp ---------TTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEE
T ss_pred ---------cCcCcCCCEEECCCCcCCccCH--HHHhCCCCCCEEE
Confidence 0136788999999887644321 1235567777776
No 83
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.10 E-value=1.5e-09 Score=100.71 Aligned_cols=12 Identities=8% Similarity=-0.025 Sum_probs=7.5
Q ss_pred ccccceeecccc
Q 039067 253 LAMIKELKLYRP 264 (304)
Q Consensus 253 l~~L~~L~l~~c 264 (304)
+++|++|+++++
T Consensus 276 ~~~L~~L~ls~N 287 (454)
T 1jl5_A 276 PQSLTFLDVSEN 287 (454)
T ss_dssp CTTCCEEECCSS
T ss_pred cCcCCEEECcCC
Confidence 356666666665
No 84
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.08 E-value=5.3e-10 Score=107.39 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=76.4
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRAD 101 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~ 101 (304)
+.++..+.+.+..+..+... .. +++|+.|++++| .+..++. +..+++|+.|++++|. +..++.-...+
T Consensus 20 l~~l~~l~l~~~~i~~~~~~--~~-----L~~L~~L~l~~n-~i~~l~~---l~~l~~L~~L~Ls~N~-l~~~~~l~~l~ 87 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQ--NE-----LNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGNK-LTDIKPLTNLK 87 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECH--HH-----HTTCCCCBCTTC-CCCCCTT---GGGCTTCCEEECTTSC-CCCCGGGGGCT
T ss_pred HHHHHHHhccCCCcccccch--hc-----CCCCCEEECcCC-CCCCChH---HccCCCCCEEEeeCCC-CCCChhhccCC
Confidence 55566666666654443221 11 799999999987 5777742 4679999999999996 66665434458
Q ss_pred ccceeecccCccceecCCCcccCCCCccceeeecccccccccc
Q 039067 102 QLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFA 144 (304)
Q Consensus 102 ~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 144 (304)
+|+.|+|+++ .+..++. ...+++|+.|++++|. ++.++
T Consensus 88 ~L~~L~Ls~N-~l~~l~~---l~~l~~L~~L~Ls~N~-l~~l~ 125 (605)
T 1m9s_A 88 NLGWLFLDEN-KIKDLSS---LKDLKKLKSLSLEHNG-ISDIN 125 (605)
T ss_dssp TCCEEECCSS-CCCCCTT---STTCTTCCEEECTTSC-CCCCG
T ss_pred CCCEEECcCC-CCCCChh---hccCCCCCEEEecCCC-CCCCc
Confidence 9999999998 6777653 3468999999999984 66553
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.05 E-value=6.6e-09 Score=98.84 Aligned_cols=58 Identities=26% Similarity=0.272 Sum_probs=29.0
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccC
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHC 88 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c 88 (304)
.+++|++|+|++|+++.+....... +++|++|+++++ +++.++.. .+++|++|++++|
T Consensus 74 ~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N-~l~~lp~~----~l~~L~~L~Ls~N 131 (562)
T 3a79_B 74 FLSELRVLRLSHNRIRSLDFHVFLF-----NQDLEYLDVSHN-RLQNISCC----PMASLRHLDLSFN 131 (562)
T ss_dssp TCTTCCEEECCSCCCCEECTTTTTT-----CTTCCEEECTTS-CCCEECSC----CCTTCSEEECCSS
T ss_pred cCCCccEEECCCCCCCcCCHHHhCC-----CCCCCEEECCCC-cCCccCcc----ccccCCEEECCCC
Confidence 4667777777777665553332222 455555555554 34444221 3444444444444
No 86
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.04 E-value=1.1e-09 Score=90.02 Aligned_cols=57 Identities=19% Similarity=0.217 Sum_probs=29.5
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCc
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCE 89 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~ 89 (304)
+++|+.|+++++++..+. +... +++|++|++++| .+..++ ....+++|++|++++|.
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~------l~~L~~L~l~~n-~~~~~~---~l~~l~~L~~L~l~~n~ 99 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEY------AHNIKDLTINNI-HATNYN---PISGLSNLERLRIMGKD 99 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGG------CTTCSEEEEESC-CCSCCG---GGTTCTTCCEEEEECTT
T ss_pred cCCccEEeccCCCccChH-HHhc------CCCCCEEEccCC-CCCcch---hhhcCCCCCEEEeECCc
Confidence 555666666666554433 1111 566666666665 444431 23445666666666653
No 87
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.04 E-value=4.9e-11 Score=113.95 Aligned_cols=33 Identities=21% Similarity=0.001 Sum_probs=18.3
Q ss_pred cccccEEEeccccccccccccCccccccCccccc
Q 039067 192 VSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE 225 (304)
Q Consensus 192 ~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~ 225 (304)
+++|++|++++|....... ......+++|+.|.
T Consensus 288 ~~~L~~L~L~~~~l~~~~l-~~~~~~~~~L~~L~ 320 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDL-VKLLCQCPKLQRLW 320 (594)
T ss_dssp HTTCCEEECTTCCCCHHHH-HHHHTTCTTCCEEE
T ss_pred hCCCCEEEccCCCCCHHHH-HHHHhcCCCcCEEe
Confidence 5788888888877311000 00123566777776
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.02 E-value=3.2e-09 Score=90.47 Aligned_cols=174 Identities=16% Similarity=0.190 Sum_probs=103.8
Q ss_pred CccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--CC
Q 039067 23 PNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--RA 100 (304)
Q Consensus 23 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~ 100 (304)
.+.+++++++.+++.++... .++|+.|+++++ ++..+++ ..+..+++|++|+++++. +..+.... ..
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~--------~~~l~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 82 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI--------PADTEKLDLQST-GLATLSD-ATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDL 82 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC--------CTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTSC-CCCCCTTTTTTC
T ss_pred CCCeEEecCCCCccccCCCC--------CCCCCEEEccCC-CcCccCH-hHhcCcccCCEEECCCCc-CCccCHhHhccC
Confidence 34566777777666655432 467788888876 5666643 234567888888888874 55554332 23
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCCCCCCCCCCCcccccccccccccceecccccc
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQNNENDQLGIPEQQLLWPLEKSLRVTVDHQLT 180 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~l~ 180 (304)
++|++|+++++ +++.++... ...+++|+.|+++++ +++.++... +
T Consensus 83 ~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~-----------------~--------------- 127 (251)
T 3m19_A 83 TELGTLGLANN-QLASLPLGV-FDHLTQLDKLYLGGN-QLKSLPSGV-----------------F--------------- 127 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTT-----------------T---------------
T ss_pred CcCCEEECCCC-cccccChhH-hcccCCCCEEEcCCC-cCCCcChhH-----------------h---------------
Confidence 78888888776 566665432 235778888888877 466554311 0
Q ss_pred ceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCcccccccccccccee
Q 039067 181 SLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIKEL 259 (304)
Q Consensus 181 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~~L 259 (304)
..+++|++|++++|....+.. ..+..+++|+.|. ....+..+.+. .+..+++|+.|
T Consensus 128 ---------~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L 184 (251)
T 3m19_A 128 ---------DRLTKLKELRLNTNQLQSIPA--GAFDKLTNLQTLSLSTNQLQSVPHG------------AFDRLGKLQTI 184 (251)
T ss_dssp ---------TTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTT------------TTTTCTTCCEE
T ss_pred ---------ccCCcccEEECcCCcCCccCH--HHcCcCcCCCEEECCCCcCCccCHH------------HHhCCCCCCEE
Confidence 125678888888776543321 1134566777776 33333332221 12356777777
Q ss_pred eccccc
Q 039067 260 KLYRPY 265 (304)
Q Consensus 260 ~l~~c~ 265 (304)
++.+++
T Consensus 185 ~l~~N~ 190 (251)
T 3m19_A 185 TLFGNQ 190 (251)
T ss_dssp ECCSCC
T ss_pred EeeCCc
Confidence 777653
No 89
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.99 E-value=2.3e-09 Score=92.27 Aligned_cols=106 Identities=21% Similarity=0.212 Sum_probs=69.0
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCC
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRA 100 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 100 (304)
.+++|+.|++++++++.+. +. .. +++|++|+++++ .+..+++ ...+++|++|++++|. +..++....
T Consensus 39 ~l~~L~~L~l~~n~i~~l~-~l-~~-----l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N~-l~~l~~~~~- 105 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA-GM-QF-----FTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRNR-LKNLNGIPS- 105 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT-TG-GG-----CTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSSC-CSCCTTCCC-
T ss_pred hcCcCcEEECcCCCcccch-HH-hh-----CCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCCc-cCCcCcccc-
Confidence 4677788888877666553 11 11 677888888776 5666643 4567788888887774 655554444
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeecccccccccc
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFA 144 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 144 (304)
++|+.|+++++ ++++++. ...+++|+.|+++++ +++.++
T Consensus 106 ~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~Ls~N-~i~~~~ 144 (263)
T 1xeu_A 106 ACLSRLFLDNN-ELRDTDS---LIHLKNLEILSIRNN-KLKSIV 144 (263)
T ss_dssp SSCCEEECCSS-CCSBSGG---GTTCTTCCEEECTTS-CCCBCG
T ss_pred CcccEEEccCC-ccCCChh---hcCcccccEEECCCC-cCCCCh
Confidence 77888888776 5555532 235777788877777 365543
No 90
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.98 E-value=6.7e-11 Score=112.99 Aligned_cols=83 Identities=14% Similarity=0.038 Sum_probs=39.0
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc-cCCCccceeeccc----------CccceecCC
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE-NRADQLTTLGLQY----------LPKLRCLYP 119 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~-~~~~~L~~L~L~~----------c~~L~~~~~ 119 (304)
+++|++|++++|. +...........+++|++|+++++..-..+... ...++|++|++++ |..+.....
T Consensus 292 ~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~ 370 (592)
T 3ogk_B 292 AAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370 (592)
T ss_dssp GGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred cCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence 5667777776664 433322223455666666666633211111111 1125666666664 544443221
Q ss_pred CcccCCCCccceeee
Q 039067 120 GMHTSEWPALESLLV 134 (304)
Q Consensus 120 ~~~~~~l~~L~~L~l 134 (304)
......+++|+.|.+
T Consensus 371 ~~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 371 IALAQGCQELEYMAV 385 (592)
T ss_dssp HHHHHHCTTCSEEEE
T ss_pred HHHHhhCccCeEEEe
Confidence 111123566666666
No 91
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.97 E-value=9e-10 Score=94.81 Aligned_cols=106 Identities=12% Similarity=0.168 Sum_probs=80.8
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCC
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRA 100 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 100 (304)
.+.++..+.++++.++.+.. . .. +++|++|++++| ++++++ ....+++|++|++++|. +..++.-...
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~-~-~~-----l~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~L~~N~-i~~~~~l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVS-Q-KE-----LSGVQNFNGDNS-NIQSLA---GMQFFTNLKELHLSHNQ-ISDLSPLKDL 84 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEEC-H-HH-----HTTCSEEECTTS-CCCCCT---TGGGCTTCCEEECCSSC-CCCCGGGTTC
T ss_pred HHHHHHHHHhcCCCcccccc-h-hh-----cCcCcEEECcCC-Ccccch---HHhhCCCCCEEECCCCc-cCCChhhccC
Confidence 47778888898887766541 1 11 899999999998 788874 35678999999999995 7766553445
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeecccccccccc
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFA 144 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 144 (304)
++|+.|+++++ +++.++... . ++|+.|+++++ +++.++
T Consensus 85 ~~L~~L~L~~N-~l~~l~~~~---~-~~L~~L~L~~N-~l~~~~ 122 (263)
T 1xeu_A 85 TKLEELSVNRN-RLKNLNGIP---S-ACLSRLFLDNN-ELRDTD 122 (263)
T ss_dssp SSCCEEECCSS-CCSCCTTCC---C-SSCCEEECCSS-CCSBSG
T ss_pred CCCCEEECCCC-ccCCcCccc---c-CcccEEEccCC-ccCCCh
Confidence 89999999988 677766432 2 89999999998 577654
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.96 E-value=7.4e-09 Score=98.63 Aligned_cols=98 Identities=16% Similarity=0.124 Sum_probs=72.9
Q ss_pred ccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCCcc
Q 039067 24 NLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRADQL 103 (304)
Q Consensus 24 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L 103 (304)
+|+.|++++++++.++... +++|++|+++++ +++.++ ..+++|++|++++|. +..++. .. .+|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--------~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N~-l~~ip~-l~-~~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--------PPQITVLEITQN-ALISLP-----ELPASLEYLDACDNR-LSTLPE-LP-ASL 122 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--------CTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSCCCC-CC-TTC
T ss_pred CccEEEeCCCCCCccCHhH--------cCCCCEEECcCC-CCcccc-----cccCCCCEEEccCCC-CCCcch-hh-cCC
Confidence 7889999988777654431 688999999886 677774 346899999999884 766655 22 489
Q ss_pred ceeecccCccceecCCCcccCCCCccceeeeccccccccccc
Q 039067 104 TTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 104 ~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 145 (304)
+.|+++++ ++++++. .+++|+.|+++++ +++.+|.
T Consensus 123 ~~L~Ls~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~lp~ 157 (571)
T 3cvr_A 123 KHLDVDNN-QLTMLPE-----LPALLEYINADNN-QLTMLPE 157 (571)
T ss_dssp CEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC
T ss_pred CEEECCCC-cCCCCCC-----cCccccEEeCCCC-ccCcCCC
Confidence 99999887 5776654 4788999999888 4776653
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.94 E-value=7.5e-09 Score=87.04 Aligned_cols=112 Identities=23% Similarity=0.189 Sum_probs=85.3
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--C
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--R 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~ 99 (304)
.++|+.|+|+++++..+....... +++|++|+++++ ++..+++ ..+..+++|++|+++++. +..++... .
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~L~~N-~l~~i~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~ 110 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDS-----LINLKELYLGSN-QLGALPV-GVFDSLTQLTVLDLGTNQ-LTVLPSAVFDR 110 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTT-----CTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCCCEEEcCCCccCccCHHHhhC-----ccCCcEEECCCC-CCCCcCh-hhcccCCCcCEEECCCCc-CCccChhHhCc
Confidence 589999999999887764433332 899999999987 6777743 445678999999999985 77666543 3
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeeccccccccccc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 145 (304)
.++|++|+++++ +++.++... ..+++|+.|+++++ +++.++.
T Consensus 111 l~~L~~L~Ls~N-~l~~lp~~~--~~l~~L~~L~L~~N-~l~~~~~ 152 (229)
T 3e6j_A 111 LVHLKELFMCCN-KLTELPRGI--ERLTHLTHLALDQN-QLKSIPH 152 (229)
T ss_dssp CTTCCEEECCSS-CCCSCCTTG--GGCTTCSEEECCSS-CCCCCCT
T ss_pred chhhCeEeccCC-cccccCccc--ccCCCCCEEECCCC-cCCccCH
Confidence 489999999887 677776543 46899999999998 5776653
No 94
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.91 E-value=6e-09 Score=99.82 Aligned_cols=110 Identities=21% Similarity=0.211 Sum_probs=85.5
Q ss_pred CccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--CC
Q 039067 23 PNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--RA 100 (304)
Q Consensus 23 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~ 100 (304)
+++++|+|++++++.+....+.. +++|++|++++| +++.+++ ..++.+++|++|++++|. ++.++... +.
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~-----l~~L~~L~Ls~N-~i~~i~~-~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L 123 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFS-----FPELQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGNP-IQSLALGAFSGL 123 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT-----CTTCCEEECTTC-CCCEECT-TTTTTCTTCCEEECTTCC-CCEECGGGGTTC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhC-----CCCCCEEECCCC-cCCCcCh-hHhcCCCCCCEEEccCCc-CCCCCHHHhcCC
Confidence 57999999999998887654443 899999999998 6888844 445789999999999995 77776543 34
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeeccccccccc
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIF 143 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l 143 (304)
++|++|+++++ ++++++... ...+++|+.|+++++ .++.+
T Consensus 124 ~~L~~L~Ls~N-~l~~l~~~~-~~~L~~L~~L~Ls~N-~l~~~ 163 (635)
T 4g8a_A 124 SSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN-LIQSF 163 (635)
T ss_dssp TTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSS-CCCCC
T ss_pred CCCCEEECCCC-cCCCCChhh-hhcCcccCeeccccC-ccccC
Confidence 89999999988 677776543 246899999999988 46554
No 95
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.91 E-value=5.2e-10 Score=106.79 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=41.6
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCc-ccEEeeccCccccch--hcc-cCCCccceeecccCccceecCCC---ccc
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQ-LQHLDIRHCEDLQEI--ISE-NRADQLTTLGLQYLPKLRCLYPG---MHT 123 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~-L~~L~i~~c~~l~~l--~~~-~~~~~L~~L~L~~c~~L~~~~~~---~~~ 123 (304)
+++|++|++++| .+...........+++ |++|++++|..+... ... ...++|++|++++|. +.+.... ...
T Consensus 111 ~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 111 LRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELA 188 (592)
T ss_dssp CTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHH
T ss_pred CCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHH
Confidence 677777777776 3433322222222444 777777777643211 100 112677777777662 3221100 011
Q ss_pred CCCCccceeeeccc
Q 039067 124 SEWPALESLLVRHC 137 (304)
Q Consensus 124 ~~l~~L~~L~l~~C 137 (304)
..+++|+.|+++++
T Consensus 189 ~~~~~L~~L~L~~n 202 (592)
T 3ogk_B 189 QHNTSLEVLNFYMT 202 (592)
T ss_dssp HHCCCCCEEECTTC
T ss_pred hcCCCccEEEeecc
Confidence 23566666666544
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.90 E-value=1.4e-08 Score=83.81 Aligned_cols=112 Identities=20% Similarity=0.220 Sum_probs=84.6
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--C
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--R 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~ 99 (304)
.++|+.|++++++++.+....... +++|++|+++++ +++.+++ .....+++|++|++++|. +..++... .
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 98 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDE-----LTSLTQLYLGGN-KLQSLPN-GVFNKLTSLTYLNLSTNQ-LQSLPNGVFDK 98 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTT-----CTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCCcEEEcCCCccCcCChhhhcc-----cccCcEEECCCC-ccCccCh-hhcCCCCCcCEEECCCCc-CCccCHhHhcC
Confidence 678999999999887665443332 899999999986 7777743 344678999999999995 66665432 3
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeecccccccccc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFA 144 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 144 (304)
.++|++|+++++ +++.++... ...+++|+.|+++++ +++.++
T Consensus 99 l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~ 140 (208)
T 2o6s_A 99 LTQLKELALNTN-QLQSLPDGV-FDKLTQLKDLRLYQN-QLKSVP 140 (208)
T ss_dssp CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCC
T ss_pred ccCCCEEEcCCC-cCcccCHhH-hccCCcCCEEECCCC-ccceeC
Confidence 489999999887 677766542 236899999999998 476554
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.89 E-value=9.2e-09 Score=84.34 Aligned_cols=113 Identities=20% Similarity=0.263 Sum_probs=82.1
Q ss_pred ccccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccc-hhc
Q 039067 18 EKVALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQE-IIS 96 (304)
Q Consensus 18 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~-l~~ 96 (304)
....+++|++|++++|.++.+. .... +++|++|++++| .+....+ .....+++|++|++++|. +.. .+.
T Consensus 61 ~l~~l~~L~~L~l~~n~~~~~~--~l~~-----l~~L~~L~l~~n-~l~~~~~-~~l~~l~~L~~L~Ls~n~-i~~~~~~ 130 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHATNYN--PISG-----LSNLERLRIMGK-DVTSDKI-PNLSGLTSLTLLDISHSA-HDDSILT 130 (197)
T ss_dssp TGGGCTTCSEEEEESCCCSCCG--GGTT-----CTTCCEEEEECT-TCBGGGS-CCCTTCTTCCEEECCSSB-CBGGGHH
T ss_pred HHhcCCCCCEEEccCCCCCcch--hhhc-----CCCCCEEEeECC-ccCcccC-hhhcCCCCCCEEEecCCc-cCcHhHH
Confidence 3456899999999999665542 1111 899999999997 5665322 234678999999999996 543 222
Q ss_pred -ccCCCccceeecccCccceecCCCcccCCCCccceeeecccccccccc
Q 039067 97 -ENRADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFA 144 (304)
Q Consensus 97 -~~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 144 (304)
-...++|++|+++++..+..++. ...+++|+.|++++|. ++.++
T Consensus 131 ~l~~l~~L~~L~L~~n~~i~~~~~---l~~l~~L~~L~l~~n~-i~~~~ 175 (197)
T 4ezg_A 131 KINTLPKVNSIDLSYNGAITDIMP---LKTLPELKSLNIQFDG-VHDYR 175 (197)
T ss_dssp HHTTCSSCCEEECCSCTBCCCCGG---GGGCSSCCEEECTTBC-CCCCT
T ss_pred HHhhCCCCCEEEccCCCCccccHh---hcCCCCCCEEECCCCC-CcChH
Confidence 23348999999999976777752 3468999999999984 66543
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.89 E-value=1.8e-08 Score=84.20 Aligned_cols=113 Identities=17% Similarity=0.188 Sum_probs=86.5
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--C
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--R 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~ 99 (304)
.++|++|++++++++.+....... +++|++|+++++ .+..+.+ ..+..+++|++|+++++. +..++... +
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~~~-----l~~L~~L~Ls~N-~i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~ 102 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAFSP-----YKKLRRIDLSNN-QISELAP-DAFQGLRSLNSLVLYGNK-ITELPKSLFEG 102 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTT-----CTTCCEEECCSS-CCCEECT-TTTTTCSSCCEEECCSSC-CCCCCTTTTTT
T ss_pred CcCCCEEECCCCcCCCcCHhHhhC-----CCCCCEEECCCC-cCCCcCH-HHhhCCcCCCEEECCCCc-CCccCHhHccC
Confidence 478999999999888876544333 899999999997 6777744 345688999999999996 77776543 3
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeeccccccccccc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 145 (304)
.++|++|+++++ +++.+.... ...+++|+.|+++++ +++.++.
T Consensus 103 l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~ 145 (220)
T 2v9t_B 103 LFSLQLLLLNAN-KINCLRVDA-FQDLHNLNLLSLYDN-KLQTIAK 145 (220)
T ss_dssp CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCT
T ss_pred CCCCCEEECCCC-CCCEeCHHH-cCCCCCCCEEECCCC-cCCEECH
Confidence 489999999987 677765543 236899999999998 4776653
No 99
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.87 E-value=3.4e-09 Score=84.51 Aligned_cols=111 Identities=21% Similarity=0.204 Sum_probs=80.6
Q ss_pred cCCccceeeecceeee--eecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccc-hhcc
Q 039067 21 ALPNLEALEISEINVN--KIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQE-IISE 97 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~--~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~-l~~~ 97 (304)
..++|++|++++|++. .++... .. +++|++|++++| .++.+ ..+..+++|++|++++|. +.. ++..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~-~~-----l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 90 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLT-AE-----FVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSENR-IFGGLDML 90 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCC-GG-----GGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESCC-CCSCCCHH
T ss_pred CcccCCEEECCCCCCChhhHHHHH-Hh-----CCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCCc-CchHHHHH
Confidence 3688999999999877 554332 11 899999999998 47766 335678999999999996 554 3322
Q ss_pred cC-CCccceeecccCccceecCCCcccCCCCccceeeecccccccccc
Q 039067 98 NR-ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFA 144 (304)
Q Consensus 98 ~~-~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 144 (304)
.. .++|+.|+++++ +++.++.......+++|+.|++++++ ++.++
T Consensus 91 ~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~ 136 (168)
T 2ell_A 91 AEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLN 136 (168)
T ss_dssp HHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTST
T ss_pred HhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchH
Confidence 22 489999999988 67776532233468999999999984 66554
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.87 E-value=3.8e-10 Score=102.31 Aligned_cols=243 Identities=12% Similarity=0.038 Sum_probs=124.1
Q ss_pred cccccccCCccceeeecceeeeeecccC---CCCCccCCCCCccEEeeccC--cccccccchhh------hhcCCcccEE
Q 039067 15 LFNEKVALPNLEALEISEINVNKIWHYN---HLPVMFPRFQNLTRLIVWRC--HKLKYIFSASM------IGSLKQLQHL 83 (304)
Q Consensus 15 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~---~~~~~~~~~~~L~~L~l~~C--~~l~~l~~~~~------~~~l~~L~~L 83 (304)
+......+++|++|+|++|++....... .... +++|++|++++| .++....|... ...+++|++|
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~----~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS----KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTT----CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHh----CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 3334445889999999999776532111 1111 799999999987 33332212222 2578999999
Q ss_pred eeccCccccc-----hhcc-cCCCccceeecccCccceecCCCcc---cCCC---------Cccceeeecccccccc--c
Q 039067 84 DIRHCEDLQE-----IISE-NRADQLTTLGLQYLPKLRCLYPGMH---TSEW---------PALESLLVRHCDKLKI--F 143 (304)
Q Consensus 84 ~i~~c~~l~~-----l~~~-~~~~~L~~L~L~~c~~L~~~~~~~~---~~~l---------~~L~~L~l~~C~~L~~--l 143 (304)
++++|. +.. ++.. ...++|++|++++|. +........ ...+ ++|++|++++|. ++. +
T Consensus 100 ~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~ 176 (386)
T 2ca6_A 100 RLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSM 176 (386)
T ss_dssp ECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGH
T ss_pred ECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHH
Confidence 999986 433 2211 123899999998883 432211100 0112 789999998884 542 2
Q ss_pred cc-----CCCCCCCCCCCCCcccccccccccccceeccccccceeeeeccchhcccccEEEecccccc----ccccccCc
Q 039067 144 AA-----DLSQNNENDQLGIPEQQLLWPLEKSLRVTVDHQLTSLVIMIDDDQIVSNFKELSLSGKDVK----MILQADFP 214 (304)
Q Consensus 144 ~~-----~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~----~~~~~~~~ 214 (304)
+. ...+.++.+.++....... + ...+. ...-..+++|+.|++++|... .... ..
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~----g---------~~~l~--~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~--~~ 239 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPE----G---------IEHLL--LEGLAYCQELKVLDLQDNTFTHLGSSALA--IA 239 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHH----H---------HHHHH--HTTGGGCTTCCEEECCSSCCHHHHHHHHH--HH
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHh----H---------HHHHH--HHHhhcCCCccEEECcCCCCCcHHHHHHH--HH
Confidence 21 1122233333222211100 0 00000 000113567888888877642 1111 01
Q ss_pred cccccCccccc-ccCCCCcccchhhhhhccCcccccc--ccccccceeecccccCccc-----ccCCCCcCCCCCCcccE
Q 039067 215 QHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHV--GKLAMIKELKLYRPYHLKQ-----LGKQDSKLGPIFQYLEI 286 (304)
Q Consensus 215 ~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~--~~l~~L~~L~l~~c~~L~~-----i~~~~~~~~~~~~~L~~ 286 (304)
...+++|+.|. ....+.......+. ..+ ..+++|++|++++|. +.. +...- ...+++|++
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~--------~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l---~~~l~~L~~ 307 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVV--------DAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVI---DEKMPDLLF 307 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHH--------HHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHH---HHHCTTCCE
T ss_pred HccCCCcCEEECCCCCCchhhHHHHH--------HHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHH---HhcCCCceE
Confidence 24556677776 32223322111000 111 236888888888873 443 31110 024688888
Q ss_pred EEEecCC
Q 039067 287 LEVYYCA 293 (304)
Q Consensus 287 L~i~~C~ 293 (304)
|++.+|+
T Consensus 308 L~l~~N~ 314 (386)
T 2ca6_A 308 LELNGNR 314 (386)
T ss_dssp EECTTSB
T ss_pred EEccCCc
Confidence 8888875
No 101
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.83 E-value=5.4e-08 Score=93.16 Aligned_cols=225 Identities=16% Similarity=0.022 Sum_probs=111.2
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCccccccc-chhhhhcCCcccEEeeccCccccchhcccCC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIF-SASMIGSLKQLQHLDIRHCEDLQEIISENRA 100 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~-~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 100 (304)
+++|+.+.+.++........ .. +++|+.|+++++. +.... .......+.+|++|++..+............
T Consensus 348 l~~L~~l~l~~n~~~~~~~~--~~-----l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l 419 (635)
T 4g8a_A 348 LKSLKRLTFTSNKGGNAFSE--VD-----LPSLEFLDLSRNG-LSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGL 419 (635)
T ss_dssp CTTCCEEEEESCCSCCBCCC--CB-----CTTCCEEECCSSC-CBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTC
T ss_pred chhhhhcccccccCCCCccc--cc-----ccccccchhhccc-cccccccccchhhhhhhhhhhcccccccccccccccc
Confidence 55666666665533222111 11 6777777776642 22221 1122235566777777666422211111222
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCC---CCCCCCCCCCcccccccccccccceeccc
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLS---QNNENDQLGIPEQQLLWPLEKSLRVTVDH 177 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~---~~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 177 (304)
++|+.+.+..+......+.. ....+++++.++++++. ++..+.... +.++.+.++.......+.
T Consensus 420 ~~L~~l~l~~~~~~~~~~~~-~~~~l~~l~~l~ls~n~-l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~----------- 486 (635)
T 4g8a_A 420 EQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFL----------- 486 (635)
T ss_dssp TTCCEEECTTSEEESTTSSC-TTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEE-----------
T ss_pred ccccchhhhhcccccccccc-ccccccccccccccccc-cccccccccccchhhhhhhhhhcccccccC-----------
Confidence 56666666655333322222 12345566666666552 333322111 111111111111000000
Q ss_pred cccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCcccchhhhhhccCcccccccccccc
Q 039067 178 QLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCFPIWNVFSEEGSLEKHVGKLAMI 256 (304)
Q Consensus 178 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L 256 (304)
+ +.-..+++|+.|++++|....+.+ ..+..+++|+.|. ...++..+.|.. +..+++|
T Consensus 487 -----~---~~~~~l~~L~~L~Ls~N~L~~l~~--~~f~~l~~L~~L~Ls~N~l~~l~~~~------------~~~l~~L 544 (635)
T 4g8a_A 487 -----P---DIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQVLNMSHNNFFSLDTFP------------YKCLNSL 544 (635)
T ss_dssp -----C---SCCTTCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTSCCCBCCCGG------------GTTCTTC
T ss_pred -----c---hhhhhccccCEEECCCCccCCcCh--HHHcCCCCCCEEECCCCcCCCCChhH------------HhCCCCC
Confidence 0 011136789999999887654432 1245677888887 434444433322 3467899
Q ss_pred ceeecccccCcccccCCCCcCCCCC-CcccEEEEecCC
Q 039067 257 KELKLYRPYHLKQLGKQDSKLGPIF-QYLEILEVYYCA 293 (304)
Q Consensus 257 ~~L~l~~c~~L~~i~~~~~~~~~~~-~~L~~L~i~~C~ 293 (304)
+.|+++++ +|+.+..+.+. .+ ++|++|++.+.|
T Consensus 545 ~~L~Ls~N-~l~~~~~~~l~---~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 545 QVLDYSLN-HIMTSKKQELQ---HFPSSLAFLNLTQND 578 (635)
T ss_dssp CEEECTTS-CCCBCCSSCTT---CCCTTCCEEECTTCC
T ss_pred CEEECCCC-cCCCCCHHHHH---hhhCcCCEEEeeCCC
Confidence 99999987 56666554433 44 679999987643
No 102
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.82 E-value=4.1e-10 Score=107.51 Aligned_cols=116 Identities=16% Similarity=0.068 Sum_probs=50.6
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccC--------ccccc
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHC--------EDLQE 93 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c--------~~l~~ 93 (304)
+++|++|+|++|.+........... +++|++|++.+| +...........+++|++|++++| ..+..
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~----~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQ----CPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTT----CTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhc----CCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 5666666666664332100000001 566666666665 221111122334666666666432 22221
Q ss_pred hhcc---cCCCccceeecccCccceecCCCcccCCCCccceeeec-----ccccccccc
Q 039067 94 IISE---NRADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVR-----HCDKLKIFA 144 (304)
Q Consensus 94 l~~~---~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~-----~C~~L~~l~ 144 (304)
.... .+.++|+.|.+ +|.++...........+++|+.|++. +|.+++..|
T Consensus 362 ~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp HHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred HHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 1000 01256666633 33344332221111135677777776 555555443
No 103
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.78 E-value=1.4e-08 Score=89.27 Aligned_cols=118 Identities=16% Similarity=0.120 Sum_probs=64.4
Q ss_pred ccCCccceeeecceeeeeecccCCC-CCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccc--hhc
Q 039067 20 VALPNLEALEISEINVNKIWHYNHL-PVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQE--IIS 96 (304)
Q Consensus 20 ~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~--l~~ 96 (304)
..+++|+.|+|+++++..++..... ... .+++|++|+++++ ++..+++ ..+..+++|++|++++|.-... ++.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~--~~~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQW--LKPGLKVLSIAQA-HSLNFSC-EQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTT--CCTTCCEEEEESC-SCCCCCT-TTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHh--hcCCCcEEEeeCC-CCccchH-HHhccCCCCCEEECCCCCcCcchHHHH
Confidence 3578888888888877655221100 000 0277888888776 5666633 2345677788888877752221 111
Q ss_pred c---cCCCccceeecccCccceecCCC--cccCCCCccceeeeccccccccc
Q 039067 97 E---NRADQLTTLGLQYLPKLRCLYPG--MHTSEWPALESLLVRHCDKLKIF 143 (304)
Q Consensus 97 ~---~~~~~L~~L~L~~c~~L~~~~~~--~~~~~l~~L~~L~l~~C~~L~~l 143 (304)
. ...++|++|+++++ ++++++.. .....+++|+.|+++++ +++..
T Consensus 194 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~ 243 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDA 243 (312)
T ss_dssp HSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSS
T ss_pred HHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcc
Confidence 1 22367777777766 34422211 01113566777777766 35543
No 104
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.78 E-value=8.4e-09 Score=80.48 Aligned_cols=110 Identities=19% Similarity=0.218 Sum_probs=81.0
Q ss_pred CCccceeeecceeee--eecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccc-hhccc
Q 039067 22 LPNLEALEISEINVN--KIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQE-IISEN 98 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~--~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~-l~~~~ 98 (304)
+++|+.|++++|++. .++..... +++|++|++++| .++.+ .....+++|++|++++|. +.. ++...
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~------l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~-i~~~~~~~~ 84 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDE------FEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNR-VSGGLEVLA 84 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTT------CTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSC-CCSCTHHHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhh------cCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCc-ccchHHHHh
Confidence 688999999999877 45432211 899999999998 67766 335678999999999996 554 44332
Q ss_pred C-CCccceeecccCccceecCCCcccCCCCccceeeecccccccccc
Q 039067 99 R-ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFA 144 (304)
Q Consensus 99 ~-~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 144 (304)
. .++|++|+++++ .+++++.......+++|+.|+++++ .++..+
T Consensus 85 ~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~ 129 (149)
T 2je0_A 85 EKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLN 129 (149)
T ss_dssp HHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGST
T ss_pred hhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchH
Confidence 2 489999999988 4666542122346899999999998 477554
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.78 E-value=1.7e-08 Score=88.70 Aligned_cols=115 Identities=13% Similarity=0.100 Sum_probs=66.9
Q ss_pred ccCCccceeeecceeeeeecc----cCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccc--
Q 039067 20 VALPNLEALEISEINVNKIWH----YNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQE-- 93 (304)
Q Consensus 20 ~~~~~L~~L~L~~~~l~~~~~----~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~-- 93 (304)
..+++|++|+|+++.+..... ..... +++|++|++++| ++..+++ .....+++|++|++++|.-...
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~-----~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~ 186 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWL-----KPGLKVLSIAQA-HSPAFSC-EQVRAFPALTSLDLSDNPGLGERG 186 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTB-----CSCCCEEEEECC-SSCCCCT-TSCCCCTTCCEEECCSCTTCHHHH
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhh-----ccCCCEEEeeCC-CcchhhH-HHhccCCCCCEEECCCCCCccchh
Confidence 457888888888886654211 00111 678888888876 5565533 3345678888888888753221
Q ss_pred hhcc---cCCCccceeecccCccceecCCCc--ccCCCCccceeeeccccccccc
Q 039067 94 IISE---NRADQLTTLGLQYLPKLRCLYPGM--HTSEWPALESLLVRHCDKLKIF 143 (304)
Q Consensus 94 l~~~---~~~~~L~~L~L~~c~~L~~~~~~~--~~~~l~~L~~L~l~~C~~L~~l 143 (304)
+... ...++|++|+++++ +++.++... ....+++|++|+++++ +++..
T Consensus 187 ~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~ 239 (310)
T 4glp_A 187 LMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHN-SLRAT 239 (310)
T ss_dssp HHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCC
T ss_pred hhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCC-CCCcc
Confidence 1111 12367777777776 454433210 0124577777777776 36554
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.75 E-value=7.4e-08 Score=86.53 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=87.0
Q ss_pred CCccceeeecceeeeeecccCCC-CCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--
Q 039067 22 LPNLEALEISEINVNKIWHYNHL-PVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN-- 98 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~-~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~-- 98 (304)
.++++.|+|++++++.+...... . +++|++|+++++ ++..+++ ..+..+++|++|+++++. +..++...
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~-----l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 109 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTR-----LTNLHSLLLSHN-HLNFISS-EAFVPVPNLRYLDLSSNH-LHTLDEFLFS 109 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSC-----CTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CCEECTTTTT
T ss_pred CCCCCEEECCCCCCCccChhhhhhc-----ccccCEEECCCC-cCCccCh-hhccCCCCCCEEECCCCc-CCcCCHHHhC
Confidence 56789999999988887665433 3 899999999987 7888844 335688999999999986 77665432
Q ss_pred CCCccceeecccCccceecCCCcccCCCCccceeeeccccccccccc
Q 039067 99 RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 99 ~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 145 (304)
..++|+.|+|+++ ++..+.... ...+++|+.|+++++ +++.+|.
T Consensus 110 ~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~L~~N-~l~~l~~ 153 (361)
T 2xot_A 110 DLQALEVLLLYNN-HIVVVDRNA-FEDMAQLQKLYLSQN-QISRFPV 153 (361)
T ss_dssp TCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCSCCG
T ss_pred CCcCCCEEECCCC-cccEECHHH-hCCcccCCEEECCCC-cCCeeCH
Confidence 3389999999987 577765443 246899999999998 5887764
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.75 E-value=8.4e-08 Score=80.07 Aligned_cols=112 Identities=11% Similarity=0.110 Sum_probs=81.3
Q ss_pred CCccceeeecceeeeeecccC-CCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc--c
Q 039067 22 LPNLEALEISEINVNKIWHYN-HLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE--N 98 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~-~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~--~ 98 (304)
.+++++|+|++++++.+.... ... +++|++|+++++ +++.+++ ..+..+++|++|+++++. +..++.. .
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~-----l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 102 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKK-----LPQLRKINFSNN-KITDIEE-GAFEGASGVNEILLTSNR-LENVQHKMFK 102 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGG-----CTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CCCCCGGGGT
T ss_pred CCCCCEEEcCCCcCCccCchhhhcc-----CCCCCEEECCCC-cCCEECH-HHhCCCCCCCEEECCCCc-cCccCHhHhc
Confidence 456789999999887764322 222 899999999986 6777744 335678999999999986 6655543 2
Q ss_pred CCCccceeecccCccceecCCCcccCCCCccceeeecccccccccc
Q 039067 99 RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFA 144 (304)
Q Consensus 99 ~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 144 (304)
..++|++|+++++ +++++.... ...+++|+.|+++++ +++.++
T Consensus 103 ~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~ 145 (220)
T 2v70_A 103 GLESLKTLMLRSN-RITCVGNDS-FIGLSSVRLLSLYDN-QITTVA 145 (220)
T ss_dssp TCSSCCEEECTTS-CCCCBCTTS-STTCTTCSEEECTTS-CCCCBC
T ss_pred CCcCCCEEECCCC-cCCeECHhH-cCCCccCCEEECCCC-cCCEEC
Confidence 3489999999887 577665443 236789999999987 477653
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.73 E-value=8.6e-08 Score=91.28 Aligned_cols=99 Identities=21% Similarity=0.214 Sum_probs=79.0
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCC
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRAD 101 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~ 101 (304)
+++|+.|+|++|+++.++ . . +++|++|+++++ ++..++. +. .+|++|++++|. +..++. ..+
T Consensus 79 ~~~L~~L~Ls~N~l~~ip-~----~----l~~L~~L~Ls~N-~l~~ip~--l~---~~L~~L~Ls~N~-l~~lp~--~l~ 140 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP-E----L----PASLEYLDACDN-RLSTLPE--LP---ASLKHLDVDNNQ-LTMLPE--LPA 140 (571)
T ss_dssp CTTCSEEECCSSCCSCCC-C----C----CTTCCEEECCSS-CCSCCCC--CC---TTCCEEECCSSC-CSCCCC--CCT
T ss_pred cCCCCEEECcCCCCcccc-c----c----cCCCCEEEccCC-CCCCcch--hh---cCCCEEECCCCc-CCCCCC--cCc
Confidence 588999999999888766 2 1 899999999997 7877744 22 299999999985 777665 458
Q ss_pred ccceeecccCccceecCCCcccCCCCccceeeeccccccccccc
Q 039067 102 QLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 102 ~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 145 (304)
+|+.|+++++ .+++++. .+++|+.|+++++ +++.+|.
T Consensus 141 ~L~~L~Ls~N-~l~~lp~-----~l~~L~~L~Ls~N-~L~~lp~ 177 (571)
T 3cvr_A 141 LLEYINADNN-QLTMLPE-----LPTSLEVLSVRNN-QLTFLPE 177 (571)
T ss_dssp TCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC
T ss_pred cccEEeCCCC-ccCcCCC-----cCCCcCEEECCCC-CCCCcch
Confidence 9999999987 5777664 4689999999998 4777664
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.70 E-value=1.1e-07 Score=85.29 Aligned_cols=106 Identities=22% Similarity=0.137 Sum_probs=78.0
Q ss_pred ceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--CCCcc
Q 039067 26 EALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--RADQL 103 (304)
Q Consensus 26 ~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~~~L 103 (304)
+++++++++++.++... .++++.|+++++ ++..+++..+...+++|++|+++++. +..+.... ..++|
T Consensus 21 ~~l~c~~~~l~~iP~~~--------~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L 90 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL--------PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNL 90 (361)
T ss_dssp TEEECCSSCCSSCCSSC--------CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred CEEEeCCCCcCccCccC--------CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCC
Confidence 56777777777665432 577999999996 78888543332278999999999995 77665432 23899
Q ss_pred ceeecccCccceecCCCcccCCCCccceeeecccccccccc
Q 039067 104 TTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFA 144 (304)
Q Consensus 104 ~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 144 (304)
+.|+|+++ +++.++... ...+++|+.|+++++ +++.++
T Consensus 91 ~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~i~~~~ 128 (361)
T 2xot_A 91 RYLDLSSN-HLHTLDEFL-FSDLQALEVLLLYNN-HIVVVD 128 (361)
T ss_dssp CEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEEC
T ss_pred CEEECCCC-cCCcCCHHH-hCCCcCCCEEECCCC-cccEEC
Confidence 99999997 688877653 246899999999998 476554
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.66 E-value=1.1e-09 Score=104.37 Aligned_cols=199 Identities=13% Similarity=0.039 Sum_probs=122.7
Q ss_pred ccccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcc------------cccccchhhhhcCCcccEEe-
Q 039067 18 EKVALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHK------------LKYIFSASMIGSLKQLQHLD- 84 (304)
Q Consensus 18 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~------------l~~l~~~~~~~~l~~L~~L~- 84 (304)
+....++|+.|+|++++++.++..... +++|+.|+++++.. .... .+...+.+++|+.|+
T Consensus 344 d~~~~~~L~~L~Ls~n~L~~Lp~~i~~------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 344 DSATDEQLFRCELSVEKSTVLQSELES------CKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDP 416 (567)
T ss_dssp CCSTTTTSSSCCCCHHHHHHHHHHHHH------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCG
T ss_pred ccccCccceeccCChhhHHhhHHHHHH------HHHHHHhccccchhhhhHHHHHHhcccccC-CHHHHHHHHhcccCcc
Confidence 345578888888888877766654322 67788888765431 1112 122345677777777
Q ss_pred eccCccccchhcc---------cCCCccceeecccCccceecCCCcccCCCCccceeeecccccccccccCCCCCCCCCC
Q 039067 85 IRHCEDLQEIISE---------NRADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAADLSQNNENDQ 155 (304)
Q Consensus 85 i~~c~~l~~l~~~---------~~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~l~~~~ 155 (304)
++.. .+..+... .....|+.|+++++ ++++++. ...+++|+.|+++++ +++.+|..
T Consensus 417 l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~---~~~l~~L~~L~Ls~N-~l~~lp~~--------- 481 (567)
T 1dce_A 417 MRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH---LEQLLLVTHLDLSHN-RLRALPPA--------- 481 (567)
T ss_dssp GGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC---GGGGTTCCEEECCSS-CCCCCCGG---------
T ss_pred hhhc-ccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC---ccccccCcEeecCcc-cccccchh---------
Confidence 3332 22211110 00146889999887 7777764 346889999999998 57766631
Q ss_pred CCCcccccccccccccceeccccccceeeeeccchhcccccEEEeccccccccccccCccccccCccccc-ccCCCCccc
Q 039067 156 LGIPEQQLLWPLEKSLRVTVDHQLTSLVIMIDDDQIVSNFKELSLSGKDVKMILQADFPQHLFGSLKQLE-IVGDDSTCF 234 (304)
Q Consensus 156 ~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~-~c~~~~~~~ 234 (304)
...+++|+.|++++|....+ .....+++|+.|. ..+.+....
T Consensus 482 ---------------------------------~~~l~~L~~L~Ls~N~l~~l----p~l~~l~~L~~L~Ls~N~l~~~~ 524 (567)
T 1dce_A 482 ---------------------------------LAALRCLEVLQASDNALENV----DGVANLPRLQELLLCNNRLQQSA 524 (567)
T ss_dssp ---------------------------------GGGCTTCCEEECCSSCCCCC----GGGTTCSSCCEEECCSSCCCSSS
T ss_pred ---------------------------------hhcCCCCCEEECCCCCCCCC----cccCCCCCCcEEECCCCCCCCCC
Confidence 11378999999999876543 1355677888887 444444433
Q ss_pred -chhhhhhccCccccccccccccceeecccccCcccccCCCCcCCCCCCcccEEE
Q 039067 235 -PIWNVFSEEGSLEKHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILE 288 (304)
Q Consensus 235 -p~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~ 288 (304)
|.. +..+++|+.|++++++ ++.+..........+|+|+.|+
T Consensus 525 ~p~~------------l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 525 AIQP------------LVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TTGG------------GGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CcHH------------HhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 533 3478999999999873 5555332211122467787774
No 111
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.65 E-value=2.8e-08 Score=79.89 Aligned_cols=111 Identities=13% Similarity=0.026 Sum_probs=80.2
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc--c
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE--N 98 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~--~ 98 (304)
.+++|++|++++++++.+.. .... +++|+.|+++++ .+..+ .....+++|++|++++|. +..++.. .
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~-----~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~ 85 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGAT-----LDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNNR-ICRIGEGLDQ 85 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGG-----TTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSSC-CCEECSCHHH
T ss_pred CcCCceEEEeeCCCCchhHH-hhhc-----CCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCCc-ccccCcchhh
Confidence 37899999999998776522 1111 469999999997 67766 234678999999999996 6666532 2
Q ss_pred CCCccceeecccCccceecCCCcccCCCCccceeeecccccccccc
Q 039067 99 RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFA 144 (304)
Q Consensus 99 ~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~ 144 (304)
..++|++|+++++ .+..++.......+++|+.|.+++++ ++..|
T Consensus 86 ~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~ 129 (176)
T 1a9n_A 86 ALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKK 129 (176)
T ss_dssp HCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGST
T ss_pred cCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcH
Confidence 2389999999987 56666542223468899999999985 66544
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.61 E-value=2e-07 Score=77.74 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=84.0
Q ss_pred ccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc-
Q 039067 20 VALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN- 98 (304)
Q Consensus 20 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~- 98 (304)
..+++|+.|+|++++++.+....... +++|++|+++++ .++.++ ...+..+++|++|+++++. +..+....
T Consensus 53 ~~l~~L~~L~Ls~N~i~~~~~~~~~~-----l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~N~-l~~~~~~~~ 124 (220)
T 2v9t_B 53 SPYKKLRRIDLSNNQISELAPDAFQG-----LRSLNSLVLYGN-KITELP-KSLFEGLFSLQLLLLNANK-INCLRVDAF 124 (220)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTT-----CSSCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred hCCCCCCEEECCCCcCCCcCHHHhhC-----CcCCCEEECCCC-cCCccC-HhHccCCCCCCEEECCCCC-CCEeCHHHc
Confidence 34889999999999888764443333 899999999997 788884 3445789999999999996 66664332
Q ss_pred -CCCccceeecccCccceecCCCcccCCCCccceeeecccc
Q 039067 99 -RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCD 138 (304)
Q Consensus 99 -~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~ 138 (304)
..++|+.|+++++ +++.++... ...+++|+.|++.+.+
T Consensus 125 ~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 125 QDLHNLNLLSLYDN-KLQTIAKGT-FSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred CCCCCCCEEECCCC-cCCEECHHH-HhCCCCCCEEEeCCCC
Confidence 2389999999987 677777643 2358899999998875
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.60 E-value=2.3e-07 Score=77.40 Aligned_cols=109 Identities=16% Similarity=0.207 Sum_probs=84.3
Q ss_pred ccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc-
Q 039067 20 VALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN- 98 (304)
Q Consensus 20 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~- 98 (304)
..+++|+.|+|++++++.+....... +++|++|+++++ .+..+++ ..+..+++|++|+++++. +..+....
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~~-----l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 125 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFEG-----ASGVNEILLTSN-RLENVQH-KMFKGLESLKTLMLRSNR-ITCVGNDSF 125 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTTT-----CTTCCEEECCSS-CCCCCCG-GGGTTCSSCCEEECTTSC-CCCBCTTSS
T ss_pred ccCCCCCEEECCCCcCCEECHHHhCC-----CCCCCEEECCCC-ccCccCH-hHhcCCcCCCEEECCCCc-CCeECHhHc
Confidence 35899999999999888876544333 899999999997 6777744 445789999999999996 66554332
Q ss_pred -CCCccceeecccCccceecCCCcccCCCCccceeeecccc
Q 039067 99 -RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCD 138 (304)
Q Consensus 99 -~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~ 138 (304)
..++|++|+++++ +++++.... ...+++|+.|++++.+
T Consensus 126 ~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 126 IGLSSVRLLSLYDN-QITTVAPGA-FDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCTTCSEEECTTS-CCCCBCTTT-TTTCTTCCEEECCSCC
T ss_pred CCCccCCEEECCCC-cCCEECHHH-hcCCCCCCEEEecCcC
Confidence 2389999999987 677775443 2468999999998874
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.60 E-value=1.6e-07 Score=78.89 Aligned_cols=109 Identities=20% Similarity=0.148 Sum_probs=85.1
Q ss_pred ccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc-
Q 039067 20 VALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN- 98 (304)
Q Consensus 20 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~- 98 (304)
..+++|++|+|+++++..+....... +++|++|+++++ +++.+++ ..+..+++|++|+++++. +..++...
T Consensus 61 ~~l~~L~~L~L~~N~l~~i~~~~~~~-----l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~Ls~N~-l~~lp~~~~ 132 (229)
T 3e6j_A 61 DSLINLKELYLGSNQLGALPVGVFDS-----LTQLTVLDLGTN-QLTVLPS-AVFDRLVHLKELFMCCNK-LTELPRGIE 132 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTT-----CTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCSCCTTGG
T ss_pred hCccCCcEEECCCCCCCCcChhhccc-----CCCcCEEECCCC-cCCccCh-hHhCcchhhCeEeccCCc-ccccCcccc
Confidence 35899999999999887765543333 899999999997 7888844 445689999999999996 77665432
Q ss_pred CCCccceeecccCccceecCCCcccCCCCccceeeecccc
Q 039067 99 RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCD 138 (304)
Q Consensus 99 ~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~ 138 (304)
..++|+.|+++++ +++.++... ...+++|+.|.+.+.+
T Consensus 133 ~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 133 RLTHLTHLALDQN-QLKSIPHGA-FDRLSSLTHAYLFGNP 170 (229)
T ss_dssp GCTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCC-cCCccCHHH-HhCCCCCCEEEeeCCC
Confidence 3389999999987 788777543 2468999999998875
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.58 E-value=2.2e-07 Score=76.53 Aligned_cols=109 Identities=18% Similarity=0.201 Sum_probs=83.6
Q ss_pred ccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc-
Q 039067 20 VALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN- 98 (304)
Q Consensus 20 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~- 98 (304)
..+++|++|++++++++.+....... +++|++|+++++ ++..+++ .....+++|++|+++++. +..++...
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 120 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKLQSLPNGVFNK-----LTSLTYLNLSTN-QLQSLPN-GVFDKLTQLKELALNTNQ-LQSLPDGVF 120 (208)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTT-----CTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred cccccCcEEECCCCccCccChhhcCC-----CCCcCEEECCCC-cCCccCH-hHhcCccCCCEEEcCCCc-CcccCHhHh
Confidence 35899999999999888765443332 899999999997 6777743 344688999999999995 76665432
Q ss_pred -CCCccceeecccCccceecCCCcccCCCCccceeeecccc
Q 039067 99 -RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCD 138 (304)
Q Consensus 99 -~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~ 138 (304)
..++|+.|+++++ .+++++... ...+++|+.|++.+++
T Consensus 121 ~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 121 DKLTQLKDLRLYQN-QLKSVPDGV-FDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSCC
T ss_pred ccCCcCCEEECCCC-ccceeCHHH-hccCCCccEEEecCCC
Confidence 2489999999987 677766542 2368999999999874
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.56 E-value=1.5e-07 Score=74.88 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=83.8
Q ss_pred ccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhc--c
Q 039067 20 VALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIIS--E 97 (304)
Q Consensus 20 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~--~ 97 (304)
..+++|++|++++|.++.+ ..... +++|++|++++| .+....+ .....+++|++|++++|. +..++. .
T Consensus 46 ~~l~~L~~L~l~~n~l~~~--~~~~~-----l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 115 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISV--SNLPK-----LPKLKKLELSEN-RIFGGLD-MLAEKLPNLTHLNLSGNK-LKDISTLEP 115 (168)
T ss_dssp GGGGGCCEEEEESSCCCCC--SSCCC-----CSSCCEEEEESC-CCCSCCC-HHHHHCTTCCEEECBSSS-CCSSGGGGG
T ss_pred HhCCCCCEEeCcCCCCCCh--hhhcc-----CCCCCEEECcCC-cCchHHH-HHHhhCCCCCEEeccCCc-cCcchhHHH
Confidence 4589999999999987776 22222 899999999998 5666423 345679999999999995 766542 2
Q ss_pred -cCCCccceeecccCccceecCC--CcccCCCCccceeeeccccccccccc
Q 039067 98 -NRADQLTTLGLQYLPKLRCLYP--GMHTSEWPALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 98 -~~~~~L~~L~L~~c~~L~~~~~--~~~~~~l~~L~~L~l~~C~~L~~l~~ 145 (304)
...++|+.|+++++ .+..++. ......+++|+.|++.+|. ++..|.
T Consensus 116 l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 116 LKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp GSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred HhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 23489999999998 5666654 0123468999999999994 665553
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.55 E-value=4.2e-08 Score=88.09 Aligned_cols=111 Identities=17% Similarity=0.104 Sum_probs=70.8
Q ss_pred CCccceeeecceeeeeecc----cCCCCCccCCCC-CccEEeeccCcccccccchhhhh---c-CCcccEEeeccCcccc
Q 039067 22 LPNLEALEISEINVNKIWH----YNHLPVMFPRFQ-NLTRLIVWRCHKLKYIFSASMIG---S-LKQLQHLDIRHCEDLQ 92 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~----~~~~~~~~~~~~-~L~~L~l~~C~~l~~l~~~~~~~---~-l~~L~~L~i~~c~~l~ 92 (304)
.++|++|+|++|++..... ..... ++ +|++|++++| .+....+..+.. . +++|++|++++|. +.
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-----~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~ 93 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFAN-----TPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF-LS 93 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHT-----CCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GG
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHh-----CCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-CC
Confidence 4559999999997766543 11111 56 8999999998 666653332221 1 3899999999996 54
Q ss_pred chhcc------cCC-CccceeecccCccceecCCCcc---cCC-CCccceeeeccccccc
Q 039067 93 EIISE------NRA-DQLTTLGLQYLPKLRCLYPGMH---TSE-WPALESLLVRHCDKLK 141 (304)
Q Consensus 93 ~l~~~------~~~-~~L~~L~L~~c~~L~~~~~~~~---~~~-l~~L~~L~l~~C~~L~ 141 (304)
..... ... ++|++|+++++. +........ ... .++|++|++++| +++
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~ 151 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLG 151 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGG
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCC
Confidence 32211 111 689999999884 555443211 112 358999999988 465
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.54 E-value=4.5e-07 Score=73.92 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=68.3
Q ss_pred ceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc--cCCCcc
Q 039067 26 EALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE--NRADQL 103 (304)
Q Consensus 26 ~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~~~~L 103 (304)
+++++++++++.++... +.+|++|+++++ ++..+++...+..+++|++|+++++. +..+... ...++|
T Consensus 11 ~~l~~s~~~l~~ip~~~--------~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI--------PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHI 80 (192)
T ss_dssp TEEECTTSCCSSCCSCC--------CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTC
T ss_pred CEEEcCCCCcCcCccCC--------CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccC
Confidence 56677776666554431 457888888776 66666443335677888888888875 5555322 123778
Q ss_pred ceeecccCccceecCCCcccCCCCccceeeeccccccccc
Q 039067 104 TTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIF 143 (304)
Q Consensus 104 ~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l 143 (304)
++|+++++ ++++++... ...+++|+.|+++++ +++.+
T Consensus 81 ~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~ 117 (192)
T 1w8a_A 81 QELQLGEN-KIKEISNKM-FLGLHQLKTLNLYDN-QISCV 117 (192)
T ss_dssp CEEECCSC-CCCEECSSS-STTCTTCCEEECCSS-CCCEE
T ss_pred CEEECCCC-cCCccCHHH-hcCCCCCCEEECCCC-cCCee
Confidence 88888776 566666543 235788888888887 46654
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.53 E-value=4e-07 Score=72.97 Aligned_cols=107 Identities=17% Similarity=0.226 Sum_probs=78.0
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--C
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--R 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~ 99 (304)
+++|++|++++++++.+....... +++|++|+++++ .++.+++ .....+++|++|+++++. +..++... .
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~ 98 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDK-----LTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYLHENK-LQSLPNGVFDK 98 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTT-----CTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCCcEEEeCCCcccEeCHHHhcC-----cccccEEECCCC-cceEeCh-hHccCCCccCEEECCCCC-ccccCHHHhhC
Confidence 578999999999877655433222 789999999887 6777743 334678999999999885 66665432 2
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeecccc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCD 138 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~ 138 (304)
.++|++|+++++ +++.++... ...+++|+.|++.+++
T Consensus 99 l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 99 LTQLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred CcccCEEECcCC-cceEeCHHH-hcCCcccCEEEecCCC
Confidence 388999999887 677776543 2357889999988874
No 120
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.53 E-value=3.5e-08 Score=89.30 Aligned_cols=216 Identities=13% Similarity=0.024 Sum_probs=113.8
Q ss_pred cccCCccceeeecceeeeeecccCCCCC--c---cCCCCCccEEeeccCccccccc---chhhhhcCCcccEEeeccCcc
Q 039067 19 KVALPNLEALEISEINVNKIWHYNHLPV--M---FPRFQNLTRLIVWRCHKLKYIF---SASMIGSLKQLQHLDIRHCED 90 (304)
Q Consensus 19 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~--~---~~~~~~L~~L~l~~C~~l~~l~---~~~~~~~l~~L~~L~i~~c~~ 90 (304)
...+++|++|+|++|.+..+....+.+. + ...+++|++|+++++ .+.... .......+++|++|++++|.
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~- 133 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNG- 133 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSC-
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCCC-
Confidence 3458999999999984443322111000 0 001799999999987 454410 11234678999999999986
Q ss_pred ccchhcc--cC----C---------CccceeecccCccce--ecCCC-cccCCCCccceeeecccccccc------cc--
Q 039067 91 LQEIISE--NR----A---------DQLTTLGLQYLPKLR--CLYPG-MHTSEWPALESLLVRHCDKLKI------FA-- 144 (304)
Q Consensus 91 l~~l~~~--~~----~---------~~L~~L~L~~c~~L~--~~~~~-~~~~~l~~L~~L~l~~C~~L~~------l~-- 144 (304)
+...... .. . ++|++|+++++. +. +++.. .....+++|+.|++++| +++. .+
T Consensus 134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~ 211 (386)
T 2ca6_A 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEG 211 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHH
Confidence 4321110 00 1 689999998873 43 11100 01124678999999888 4652 11
Q ss_pred cCCCCCCCCCCCCCcccccccccccccceeccccccceeeeeccchhcccccEEEeccccccccc----cccCccccccC
Q 039067 145 ADLSQNNENDQLGIPEQQLLWPLEKSLRVTVDHQLTSLVIMIDDDQIVSNFKELSLSGKDVKMIL----QADFPQHLFGS 220 (304)
Q Consensus 145 ~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~----~~~~~~~~l~~ 220 (304)
....+.++.+.++....... + ...++ ..-..+++|+.|++++|...... ...+....+++
T Consensus 212 l~~~~~L~~L~Ls~n~l~~~----g---------~~~l~---~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~ 275 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNTFTHL----G---------SSALA---IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 275 (386)
T ss_dssp GGGCTTCCEEECCSSCCHHH----H---------HHHHH---HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC
T ss_pred hhcCCCccEEECcCCCCCcH----H---------HHHHH---HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCC
Confidence 12223344443333221100 0 00000 01113678999999998753221 00010123678
Q ss_pred ccccc-ccCCCCc----ccchhhhhhccCccccccccccccceeeccccc
Q 039067 221 LKQLE-IVGDDST----CFPIWNVFSEEGSLEKHVGKLAMIKELKLYRPY 265 (304)
Q Consensus 221 L~~L~-~c~~~~~----~~p~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~ 265 (304)
|+.|. ....+.. .+|..+. ..+++|++|++++++
T Consensus 276 L~~L~L~~n~i~~~g~~~l~~~l~-----------~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 276 LQTLRLQYNEIELDAVRTLKTVID-----------EKMPDLLFLELNGNR 314 (386)
T ss_dssp CCEEECCSSCCBHHHHHHHHHHHH-----------HHCTTCCEEECTTSB
T ss_pred eEEEECcCCcCCHHHHHHHHHHHH-----------hcCCCceEEEccCCc
Confidence 88888 3333443 2443321 246889999998874
No 121
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.53 E-value=3.5e-08 Score=91.13 Aligned_cols=41 Identities=29% Similarity=0.121 Sum_probs=22.9
Q ss_pred cccccceeecccccCcccccCCCCc--CCCCCCcccEEEEecCC
Q 039067 252 KLAMIKELKLYRPYHLKQLGKQDSK--LGPIFQYLEILEVYYCA 293 (304)
Q Consensus 252 ~l~~L~~L~l~~c~~L~~i~~~~~~--~~~~~~~L~~L~i~~C~ 293 (304)
.+++|++|+++++ .+......... .....++|++|++++|.
T Consensus 282 ~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 282 AKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred hCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 4677888888876 33321110000 01133688888888886
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.52 E-value=1.3e-08 Score=91.40 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=73.4
Q ss_pred cCC-ccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhh---hhcC-CcccEEeeccCccccchh
Q 039067 21 ALP-NLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASM---IGSL-KQLQHLDIRHCEDLQEII 95 (304)
Q Consensus 21 ~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~---~~~l-~~L~~L~i~~c~~l~~l~ 95 (304)
.++ +|++|+|++|++...........+...+++|++|++++| .+....+..+ ...+ ++|++|++++|. +....
T Consensus 48 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~ 125 (362)
T 3goz_A 48 NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKS 125 (362)
T ss_dssp TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHH
Confidence 467 899999999977653221100000000389999999998 4666543322 2334 899999999997 54332
Q ss_pred ccc------C-CCccceeecccCccceecCCCc---ccCCCC-ccceeeeccccccccc
Q 039067 96 SEN------R-ADQLTTLGLQYLPKLRCLYPGM---HTSEWP-ALESLLVRHCDKLKIF 143 (304)
Q Consensus 96 ~~~------~-~~~L~~L~L~~c~~L~~~~~~~---~~~~l~-~L~~L~l~~C~~L~~l 143 (304)
... . ..+|++|+++++ .+....... ....++ +|+.|++++| +++..
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~ 182 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASK 182 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGS
T ss_pred HHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCC-CCchh
Confidence 211 1 158999999987 455322111 011344 8999999998 46644
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.51 E-value=4.3e-07 Score=74.18 Aligned_cols=106 Identities=14% Similarity=0.124 Sum_probs=68.1
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--C
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--R 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~ 99 (304)
+++|++|.+++++++.++... .. +++|++|+++++ .+..+++ ..+..+++|++|+++++. +..++... +
T Consensus 30 ~~~l~~L~L~~n~i~~ip~~~-~~-----l~~L~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~ 100 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVPKEL-SN-----YKHLTLIDLSNN-RISTLSN-QSFSNMTQLLTLILSYNR-LRCIPPRTFDG 100 (193)
T ss_dssp CTTCCEEECCSSCCCSCCGGG-GG-----CTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCBCCTTTTTT
T ss_pred CCCCCEEECCCCcCchhHHHh-hc-----ccCCCEEECCCC-cCCEeCH-hHccCCCCCCEEECCCCc-cCEeCHHHhCC
Confidence 467888888888776655321 11 678888888775 5666633 334567888888888775 65554332 2
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeecccc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCD 138 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~ 138 (304)
.++|+.|+++++ +++.++.... ..+++|+.|++.+.+
T Consensus 101 l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 101 LKSLRLLSLHGN-DISVVPEGAF-NDLSALSHLAIGANP 137 (193)
T ss_dssp CTTCCEEECCSS-CCCBCCTTTT-TTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCC-CCCeeChhhh-hcCccccEEEeCCCC
Confidence 377888888776 5666665432 246777777777653
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.50 E-value=9.5e-07 Score=72.09 Aligned_cols=105 Identities=17% Similarity=0.255 Sum_probs=79.9
Q ss_pred ceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--CCCcc
Q 039067 26 EALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--RADQL 103 (304)
Q Consensus 26 ~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~~~L 103 (304)
+++++++++++.++... +++|++|+++++ .++.++ ..+..+++|++|+++++. +..+.... +.++|
T Consensus 13 ~~l~~~~~~l~~ip~~~--------~~~l~~L~L~~n-~i~~ip--~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--------PRDVTELYLDGN-QFTLVP--KELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTTSCCSSCCSCC--------CTTCCEEECCSS-CCCSCC--GGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CEEEcCCCCCCcCCCCC--------CCCCCEEECCCC-cCchhH--HHhhcccCCCEEECCCCc-CCEeCHhHccCCCCC
Confidence 56777777777765431 689999999986 788774 345789999999999996 77665432 23899
Q ss_pred ceeecccCccceecCCCcccCCCCccceeeeccccccccccc
Q 039067 104 TTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 104 ~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 145 (304)
++|+++++ +++.++.... ..+++|+.|+++++ +++.++.
T Consensus 81 ~~L~Ls~N-~l~~i~~~~f-~~l~~L~~L~L~~N-~l~~~~~ 119 (193)
T 2wfh_A 81 LTLILSYN-RLRCIPPRTF-DGLKSLRLLSLHGN-DISVVPE 119 (193)
T ss_dssp CEEECCSS-CCCBCCTTTT-TTCTTCCEEECCSS-CCCBCCT
T ss_pred CEEECCCC-ccCEeCHHHh-CCCCCCCEEECCCC-CCCeeCh
Confidence 99999987 6887776532 46899999999998 4776653
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.50 E-value=8.1e-07 Score=71.17 Aligned_cols=107 Identities=21% Similarity=0.192 Sum_probs=78.4
Q ss_pred cceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--CCCc
Q 039067 25 LEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--RADQ 102 (304)
Q Consensus 25 L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~~~ 102 (304)
.+.+.+++++++.++... +++|++|+++++ +++.+++ .....+++|++|+++++. +..++... ..++
T Consensus 9 ~~~l~~~~~~l~~~p~~~--------~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--------PSSATRLELESN-KLQSLPH-GVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--------CTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCEEEecCCCCccCCCCC--------CCCCcEEEeCCC-cccEeCH-HHhcCcccccEEECCCCc-ceEeChhHccCCCc
Confidence 456667666666654331 689999999997 6777743 344678999999999985 77665432 3489
Q ss_pred cceeecccCccceecCCCcccCCCCccceeeeccccccccccc
Q 039067 103 LTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 103 L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~ 145 (304)
|++|+++++ ++++++... ...+++|+.|+++++ +++.+|.
T Consensus 78 L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~ 117 (177)
T 2o6r_A 78 LTILYLHEN-KLQSLPNGV-FDKLTQLKELALDTN-QLKSVPD 117 (177)
T ss_dssp CCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCT
T ss_pred cCEEECCCC-CccccCHHH-hhCCcccCEEECcCC-cceEeCH
Confidence 999999987 677776543 236899999999998 5776653
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=2.4e-06 Score=75.52 Aligned_cols=80 Identities=13% Similarity=0.074 Sum_probs=53.4
Q ss_pred cccccEEEeccccccccccccCccccccCcccccccCCCCcccchhhhhhccCccccccccccccc-eeecccccCcccc
Q 039067 192 VSNFKELSLSGKDVKMILQADFPQHLFGSLKQLEIVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIK-ELKLYRPYHLKQL 270 (304)
Q Consensus 192 ~~~L~~L~l~~c~~~~~~~~~~~~~~l~~L~~L~~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~-~L~l~~c~~L~~i 270 (304)
+++|+.+++.++....+.. ..+.++++|+.+.--.++.. .+. ..+..+++|+ .+.+.+ +++.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~--~aF~~~~~L~~l~l~~ni~~-I~~-----------~aF~~~~~L~~~l~l~~--~l~~I 288 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPD--FTFAQKKYLLKIKLPHNLKT-IGQ-----------RVFSNCGRLAGTLELPA--SVTAI 288 (329)
T ss_dssp CTTCCEEECTTBCCCEECT--TTTTTCTTCCEEECCTTCCE-ECT-----------TTTTTCTTCCEEEEECT--TCCEE
T ss_pred cCCCeEEECCCCCcceecH--hhhhCCCCCCEEECCcccce-ehH-----------HHhhCChhccEEEEEcc--cceEE
Confidence 6899999999877644422 33667778887772223333 222 2234678888 888887 78888
Q ss_pred cCCCCcCCCCCCcccEEEEe
Q 039067 271 GKQDSKLGPIFQYLEILEVY 290 (304)
Q Consensus 271 ~~~~~~~~~~~~~L~~L~i~ 290 (304)
....+. .|++|++|++.
T Consensus 289 ~~~aF~---~c~~L~~l~l~ 305 (329)
T 3sb4_A 289 EFGAFM---GCDNLRYVLAT 305 (329)
T ss_dssp CTTTTT---TCTTEEEEEEC
T ss_pred chhhhh---CCccCCEEEeC
Confidence 776655 78888888874
No 127
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=6.8e-08 Score=77.46 Aligned_cols=89 Identities=8% Similarity=0.069 Sum_probs=56.1
Q ss_pred CCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc--cC----CCccceeecccCccceecCCCcccCC
Q 039067 52 QNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE--NR----ADQLTTLGLQYLPKLRCLYPGMHTSE 125 (304)
Q Consensus 52 ~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~----~~~L~~L~L~~c~~L~~~~~~~~~~~ 125 (304)
.+|+.|++++|. +++. .......+++|++|++++|..++.-... .. .++|++|+|++|++++.-.... ...
T Consensus 61 ~~L~~LDLs~~~-Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-LHH 137 (176)
T ss_dssp CCEEEEEEESCC-CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-GGG
T ss_pred ceEeEEeCcCCC-ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-Hhc
Confidence 357777777774 5444 2223356777777777777766532111 11 1467788888777776654432 235
Q ss_pred CCccceeeeccccccccc
Q 039067 126 WPALESLLVRHCDKLKIF 143 (304)
Q Consensus 126 l~~L~~L~l~~C~~L~~l 143 (304)
+++|++|++++|++++..
T Consensus 138 ~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp CTTCCEEEEESCTTCCCH
T ss_pred CCCCCEEECCCCCCCCch
Confidence 899999999999988754
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.41 E-value=1.2e-06 Score=71.43 Aligned_cols=107 Identities=21% Similarity=0.245 Sum_probs=81.8
Q ss_pred CCccceeeecceeeeeecccC-CCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--
Q 039067 22 LPNLEALEISEINVNKIWHYN-HLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN-- 98 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~-~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~-- 98 (304)
+++|++|.+++++++.+.... ... +++|++|+++++ .++.+.+ ..+..+++|++|+++++. +..++...
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~-----l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 99 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGR-----LPHLVKLELKRN-QLTGIEP-NAFEGASHIQELQLGENK-IKEISNKMFL 99 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGG-----CTTCCEEECCSS-CCCCBCT-TTTTTCTTCCEEECCSCC-CCEECSSSST
T ss_pred CCCCCEEECCCCcCCccCCcccccc-----CCCCCEEECCCC-CCCCcCH-hHcCCcccCCEEECCCCc-CCccCHHHhc
Confidence 458999999999887765432 222 899999999997 6777744 345689999999999996 77665442
Q ss_pred CCCccceeecccCccceecCCCcccCCCCccceeeecccc
Q 039067 99 RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCD 138 (304)
Q Consensus 99 ~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~ 138 (304)
..++|++|+++++ +++++.... ...+++|+.|++++.+
T Consensus 100 ~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 100 GLHQLKTLNLYDN-QISCVMPGS-FEHLNSLTSLNLASNP 137 (192)
T ss_dssp TCTTCCEEECCSS-CCCEECTTS-STTCTTCCEEECTTCC
T ss_pred CCCCCCEEECCCC-cCCeeCHHH-hhcCCCCCEEEeCCCC
Confidence 3489999999988 677765443 2468999999998874
No 129
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.41 E-value=1.2e-08 Score=94.40 Aligned_cols=110 Identities=20% Similarity=0.210 Sum_probs=60.8
Q ss_pred cCCccceeeecceeeeeecccC-CCCCccCCCC----CccEEeeccCccccccc---chhhhhcCCcccEEeeccCcccc
Q 039067 21 ALPNLEALEISEINVNKIWHYN-HLPVMFPRFQ----NLTRLIVWRCHKLKYIF---SASMIGSLKQLQHLDIRHCEDLQ 92 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~~~~----~L~~L~l~~C~~l~~l~---~~~~~~~l~~L~~L~i~~c~~l~ 92 (304)
.+++|++|+++++.+....... ... ++ +|++|++++| .+.... .......+++|++|++++|. +.
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~-----l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~ 126 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQG-----LQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LG 126 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHT-----TCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CH
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHH-----HhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCc-Cc
Confidence 3688999999988654421111 010 23 7888888887 454321 12334677888888888886 43
Q ss_pred ch-----hcc--cCCCccceeecccCccceecCCC---cccCCCCccceeeecccc
Q 039067 93 EI-----ISE--NRADQLTTLGLQYLPKLRCLYPG---MHTSEWPALESLLVRHCD 138 (304)
Q Consensus 93 ~l-----~~~--~~~~~L~~L~L~~c~~L~~~~~~---~~~~~l~~L~~L~l~~C~ 138 (304)
.. ... ...++|++|++++| ++...... .....+++|++|+++++.
T Consensus 127 ~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 127 DAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred hHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 21 110 11246888888777 34332110 011134666666666653
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.41 E-value=3.6e-07 Score=71.04 Aligned_cols=105 Identities=16% Similarity=0.164 Sum_probs=76.3
Q ss_pred ccCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchh--cc
Q 039067 20 VALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEII--SE 97 (304)
Q Consensus 20 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~--~~ 97 (304)
..+++|+.|++++|+++.+ ..... +++|++|++++| .+....+ .....+++|++|++++|. +..++ ..
T Consensus 39 ~~l~~L~~L~l~~n~l~~~--~~~~~-----l~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~ls~N~-i~~~~~~~~ 108 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI--ANLPK-----LNKLKKLELSDN-RVSGGLE-VLAEKCPNLTHLNLSGNK-IKDLSTIEP 108 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC--TTCCC-----CTTCCEEECCSS-CCCSCTH-HHHHHCTTCCEEECTTSC-CCSHHHHGG
T ss_pred hhcCCCcEEECcCCCCCCc--hhhhc-----CCCCCEEECCCC-cccchHH-HHhhhCCCCCEEECCCCc-CCChHHHHH
Confidence 4589999999999988776 22222 899999999997 5666423 344579999999999996 66653 22
Q ss_pred -cCCCccceeecccCccceecCCC--cccCCCCccceeeec
Q 039067 98 -NRADQLTTLGLQYLPKLRCLYPG--MHTSEWPALESLLVR 135 (304)
Q Consensus 98 -~~~~~L~~L~L~~c~~L~~~~~~--~~~~~l~~L~~L~l~ 135 (304)
...++|++|+++++ .+.+++.. .....+++|+.|+++
T Consensus 109 ~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 109 LKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 23489999999998 67766541 122357888888765
No 131
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.39 E-value=2.2e-07 Score=74.52 Aligned_cols=90 Identities=14% Similarity=0.195 Sum_probs=65.7
Q ss_pred CccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhc----CCcccEEeeccCccccchhc--
Q 039067 23 PNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGS----LKQLQHLDIRHCEDLQEIIS-- 96 (304)
Q Consensus 23 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~----l~~L~~L~i~~c~~l~~l~~-- 96 (304)
.+|+.|++++|.+++..-....+ +++|++|++++|..+++..- ..+.. .++|++|+|++|.+++.-..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~-----~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEG-----LQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTT-----CSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcC-----CCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 35999999999776643333222 89999999999998877622 22233 35899999999998874221
Q ss_pred ccCCCccceeecccCccceecC
Q 039067 97 ENRADQLTTLGLQYLPKLRCLY 118 (304)
Q Consensus 97 ~~~~~~L~~L~L~~c~~L~~~~ 118 (304)
-...++|+.|++++|++++...
T Consensus 135 L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCCHH
T ss_pred HhcCCCCCEEECCCCCCCCchH
Confidence 1224999999999999888643
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.38 E-value=1.1e-06 Score=83.64 Aligned_cols=107 Identities=16% Similarity=0.126 Sum_probs=63.5
Q ss_pred ccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCCCcc
Q 039067 24 NLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRADQL 103 (304)
Q Consensus 24 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L 103 (304)
+|+.|+|++++++.++. ... +++|+.|+++++ .++.+|. .++.+++|++|+++++. +..++.-...++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~-----l~~L~~L~Ls~N-~l~~lp~--~~~~l~~L~~L~Ls~N~-l~~lp~l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQ-----LLLVTHLDLSHN-RLRALPP--ALAALRCLEVLQASDNA-LENVDGVANLPRL 510 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGG-----GTTCCEEECCSS-CCCCCCG--GGGGCTTCCEEECCSSC-CCCCGGGTTCSSC
T ss_pred CceEEEecCCCCCCCcC--ccc-----cccCcEeecCcc-cccccch--hhhcCCCCCEEECCCCC-CCCCcccCCCCCC
Confidence 46667777776655532 111 677777777775 5666632 24567777777777764 5555533334677
Q ss_pred ceeecccCccceecC-CCcccCCCCccceeeecccccccccc
Q 039067 104 TTLGLQYLPKLRCLY-PGMHTSEWPALESLLVRHCDKLKIFA 144 (304)
Q Consensus 104 ~~L~L~~c~~L~~~~-~~~~~~~l~~L~~L~l~~C~~L~~l~ 144 (304)
+.|+++++ +++++. .. ....+++|+.|++++++ ++..|
T Consensus 511 ~~L~Ls~N-~l~~~~~p~-~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 511 QELLLCNN-RLQQSAAIQ-PLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp CEEECCSS-CCCSSSTTG-GGGGCTTCCEEECTTSG-GGGSS
T ss_pred cEEECCCC-CCCCCCCcH-HHhcCCCCCEEEecCCc-CCCCc
Confidence 77777766 566553 11 22356777777777763 55544
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.27 E-value=1.4e-06 Score=69.77 Aligned_cols=106 Identities=17% Similarity=0.148 Sum_probs=77.6
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhc--c-c
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIIS--E-N 98 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~--~-~ 98 (304)
.++|+.|++++++++.+ .. ... +++|++|+++++ .+..+++ .....+++|++|++++|. +..++. . .
T Consensus 41 ~~~L~~L~Ls~N~l~~~-~~-l~~-----l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~ 110 (176)
T 1a9n_A 41 LDQFDAIDFSDNEIRKL-DG-FPL-----LRRLKTLLVNNN-RICRIGE-GLDQALPDLTELILTNNS-LVELGDLDPLA 110 (176)
T ss_dssp TTCCSEEECCSSCCCEE-CC-CCC-----CSSCCEEECCSS-CCCEECS-CHHHHCTTCCEEECCSCC-CCCGGGGGGGG
T ss_pred CCCCCEEECCCCCCCcc-cc-ccc-----CCCCCEEECCCC-cccccCc-chhhcCCCCCEEECCCCc-CCcchhhHhhh
Confidence 34999999999988776 22 222 899999999997 6888743 344689999999999995 666554 1 2
Q ss_pred CCCccceeecccCccceecCCC--cccCCCCccceeeecccc
Q 039067 99 RADQLTTLGLQYLPKLRCLYPG--MHTSEWPALESLLVRHCD 138 (304)
Q Consensus 99 ~~~~L~~L~L~~c~~L~~~~~~--~~~~~l~~L~~L~l~~C~ 138 (304)
..++|+.|+++++ .+..++.. .....+++|+.|++++++
T Consensus 111 ~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 111 SLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp GCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 3489999999988 45555432 012357889999888774
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.23 E-value=3.9e-06 Score=66.94 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=71.5
Q ss_pred cceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--CCCc
Q 039067 25 LEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--RADQ 102 (304)
Q Consensus 25 L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~~~ 102 (304)
.+++++++++++.++... .++|++|+++++ +++.+++ ..+..+++|++|+++++. +..++... ..++
T Consensus 11 ~~~l~~s~n~l~~ip~~~--------~~~l~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--------PTTTQVLYLYDN-QITKLEP-GVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQ 79 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--------CTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCEEEeCCCCcCccCccC--------CCCCcEEEcCCC-cCCccCh-hhhcCcccCCEEECCCCC-cCccChhhccCCCC
Confidence 467777777776665432 578888888876 6777744 334678888888888885 76666543 2378
Q ss_pred cceeecccCccceecCCCcccCCCCccceeeecccc
Q 039067 103 LTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCD 138 (304)
Q Consensus 103 L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~ 138 (304)
|++|++++. +++.++... ...+++|+.|++++.+
T Consensus 80 L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 80 LTQLSLNDN-QLKSIPRGA-FDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred CCEEECCCC-ccCEeCHHH-hcCCCCCCEEEeCCCC
Confidence 888888877 677776543 2367889999998864
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.21 E-value=1.8e-06 Score=84.66 Aligned_cols=107 Identities=23% Similarity=0.139 Sum_probs=72.2
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccC-
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENR- 99 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~- 99 (304)
.+++|++|+|+++++..+...... +++|++|+|+++ ++..+| .. +..+++|++|++++|. +..++...+
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~~------l~~L~~L~Ls~N-~l~~lp-~~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~ 291 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIFK------YDFLTRLYLNGN-SLTELP-AE-IKNLSNLRVLDLSHNR-LTSLPAELGS 291 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGGG------CCSCSCCBCTTS-CCSCCC-GG-GGGGTTCCEEECTTSC-CSSCCSSGGG
T ss_pred cCCCCcEEECCCCCCCCCChhhcC------CCCCCEEEeeCC-cCcccC-hh-hhCCCCCCEEeCcCCc-CCccChhhcC
Confidence 367788888888876665544332 788888888876 566663 22 3677888888888875 666654322
Q ss_pred CCccceeecccCccceecCCCcccCCCCccceeeeccccccc
Q 039067 100 ADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLK 141 (304)
Q Consensus 100 ~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~ 141 (304)
.++|++|+|+++ .+..++.. ...+++|+.|++++++ ++
T Consensus 292 l~~L~~L~L~~N-~l~~lp~~--~~~l~~L~~L~L~~N~-l~ 329 (727)
T 4b8c_D 292 CFQLKYFYFFDN-MVTTLPWE--FGNLCNLQFLGVEGNP-LE 329 (727)
T ss_dssp GTTCSEEECCSS-CCCCCCSS--TTSCTTCCCEECTTSC-CC
T ss_pred CCCCCEEECCCC-CCCccChh--hhcCCCccEEeCCCCc-cC
Confidence 377888888777 56666654 3467888888887774 54
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.17 E-value=5.9e-06 Score=66.14 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=70.6
Q ss_pred ceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--CCCcc
Q 039067 26 EALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--RADQL 103 (304)
Q Consensus 26 ~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~~~L 103 (304)
+.++++++++..++... .++|++|+++++ +++.+++ ..+..+++|++|+++++. +..++... ..++|
T Consensus 15 ~~l~~~~n~l~~iP~~~--------~~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI--------PTDKQRLWLNNN-QITKLEP-GVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQL 83 (174)
T ss_dssp SEEECCSSCCSSCCSCC--------CTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred cEEEeCCCCCCccCCCc--------CCCCcEEEeCCC-CccccCH-HHhcCCcCCCEEECCCCC-CCccChhHhCCcchh
Confidence 56777777666655431 578888888876 6777744 334678888888888884 77666543 23788
Q ss_pred ceeecccCccceecCCCcccCCCCccceeeeccccccc
Q 039067 104 TTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLK 141 (304)
Q Consensus 104 ~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~ 141 (304)
+.|+++++ +++.++... ...+++|+.|++++.+ +.
T Consensus 84 ~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~L~~N~-~~ 118 (174)
T 2r9u_A 84 TQLDLNDN-HLKSIPRGA-FDNLKSLTHIYLYNNP-WD 118 (174)
T ss_dssp CEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSSC-BC
T ss_pred hEEECCCC-ccceeCHHH-hccccCCCEEEeCCCC-cc
Confidence 88888876 677776542 2358899999998874 44
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.15 E-value=1.2e-07 Score=77.59 Aligned_cols=106 Identities=21% Similarity=0.118 Sum_probs=66.4
Q ss_pred cCCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccCC
Q 039067 21 ALPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENRA 100 (304)
Q Consensus 21 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 100 (304)
.+++|++|++++++++.+. .... +++|++|++++| .+..++. ....+++|++|++++|. +..++.-...
T Consensus 46 ~l~~L~~L~ls~n~l~~l~-~~~~------l~~L~~L~l~~n-~l~~l~~--~~~~~~~L~~L~L~~N~-l~~l~~~~~l 114 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKIS-SLSG------MENLRILSLGRN-LIKKIEN--LDAVADTLEELWISYNQ-IASLSGIEKL 114 (198)
T ss_dssp HTTTCSEEECSEEEESCCC-CHHH------HTTCCEEEEEEE-EECSCSS--HHHHHHHCSEEEEEEEE-CCCHHHHHHH
T ss_pred cCCCCCEEECCCCCCcccc-cccc------CCCCCEEECCCC-Ccccccc--hhhcCCcCCEEECcCCc-CCcCCccccC
Confidence 4777888888888766654 1111 678888888776 5666632 23456788888888774 6555432223
Q ss_pred CccceeecccCccceecCCCcccCCCCccceeeecccc
Q 039067 101 DQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCD 138 (304)
Q Consensus 101 ~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~ 138 (304)
++|+.|+++++ ++..++.......+++|+.|++.+++
T Consensus 115 ~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 115 VNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 77888888776 45544321122357778888887774
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.03 E-value=9.2e-06 Score=79.64 Aligned_cols=87 Identities=17% Similarity=0.057 Sum_probs=66.2
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc-CCCccceeecccCccceecCCCcccCCCCcc
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN-RADQLTTLGLQYLPKLRCLYPGMHTSEWPAL 129 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~-~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L 129 (304)
+++|+.|+++++ ++..++. . ...+++|++|++++|. +..++... ..++|++|+|+++ +++.++.. ...+++|
T Consensus 223 l~~L~~L~Ls~n-~l~~l~~-~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~--~~~l~~L 295 (727)
T 4b8c_D 223 DQLWHALDLSNL-QIFNISA-N-IFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHN-RLTSLPAE--LGSCFQL 295 (727)
T ss_dssp CCCCCEEECTTS-CCSCCCG-G-GGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTS-CCSSCCSS--GGGGTTC
T ss_pred CCCCcEEECCCC-CCCCCCh-h-hcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCC-cCCccChh--hcCCCCC
Confidence 789999999987 5677743 3 3478999999999985 66666432 3389999999988 57777654 3568999
Q ss_pred ceeeeccccccccccc
Q 039067 130 ESLLVRHCDKLKIFAA 145 (304)
Q Consensus 130 ~~L~l~~C~~L~~l~~ 145 (304)
+.|+++++ +++.+|.
T Consensus 296 ~~L~L~~N-~l~~lp~ 310 (727)
T 4b8c_D 296 KYFYFFDN-MVTTLPW 310 (727)
T ss_dssp SEEECCSS-CCCCCCS
T ss_pred CEEECCCC-CCCccCh
Confidence 99999998 5887775
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.98 E-value=1.6e-05 Score=63.54 Aligned_cols=82 Identities=22% Similarity=0.176 Sum_probs=64.2
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--C
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--R 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~ 99 (304)
.++|++|+|++++++.+....... +++|++|+++++ +++.+++ ..+..+++|++|+++++. +..++... .
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~ 103 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDH-----LVNLQQLYFNSN-KLTAIPT-GVFDKLTQLTQLDLNDNH-LKSIPRGAFDN 103 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTT-----CTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCCcEEEeCCCCccccCHHHhcC-----CcCCCEEECCCC-CCCccCh-hHhCCcchhhEEECCCCc-cceeCHHHhcc
Confidence 589999999999888775443333 899999999997 7888844 445689999999999985 77666532 2
Q ss_pred CCccceeecccC
Q 039067 100 ADQLTTLGLQYL 111 (304)
Q Consensus 100 ~~~L~~L~L~~c 111 (304)
.++|+.|++++.
T Consensus 104 l~~L~~L~L~~N 115 (174)
T 2r9u_A 104 LKSLTHIYLYNN 115 (174)
T ss_dssp CTTCSEEECCSS
T ss_pred ccCCCEEEeCCC
Confidence 388999998876
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.95 E-value=2e-05 Score=62.71 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=64.3
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--C
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--R 99 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~ 99 (304)
.++|+.|+|++++++.+....... +++|++|+++++ +++.+++ ..+..+++|++|+++++. +..++... .
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~-----l~~L~~L~Ls~N-~l~~l~~-~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~ 100 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDR-----LTQLTRLDLDNN-QLTVLPA-GVFDKLTQLTQLSLNDNQ-LKSIPRGAFDN 100 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTT-----CTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCCcEEEcCCCcCCccChhhhcC-----cccCCEEECCCC-CcCccCh-hhccCCCCCCEEECCCCc-cCEeCHHHhcC
Confidence 589999999999888775443333 899999999997 7888844 445789999999999995 77766542 2
Q ss_pred CCccceeecccC
Q 039067 100 ADQLTTLGLQYL 111 (304)
Q Consensus 100 ~~~L~~L~L~~c 111 (304)
.++|+.|++++.
T Consensus 101 l~~L~~L~L~~N 112 (170)
T 3g39_A 101 LKSLTHIWLLNN 112 (170)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEEeCCC
Confidence 388899988876
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.91 E-value=0.0003 Score=63.89 Aligned_cols=191 Identities=10% Similarity=0.105 Sum_probs=94.2
Q ss_pred CccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccC-CCccceeecccCccceecCCCcccCCCCccce
Q 039067 53 NLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENR-ADQLTTLGLQYLPKLRCLYPGMHTSEWPALES 131 (304)
Q Consensus 53 ~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~-~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~ 131 (304)
+|+.+.+.. .++.+.. .....+++|+.+++.++. ++.+..... ..+|+.+.+.+ +++.+...+. ..+++|+.
T Consensus 158 ~L~~i~lp~--~l~~I~~-~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF-~~~~~L~~ 230 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKE-DIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPV--TLKEIGSQAF-LKTSQLKT 230 (401)
T ss_dssp CCCEEECCT--TCCEECS-STTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCT--TCCEECTTTT-TTCTTCCC
T ss_pred CceEEEeCC--CccEehH-HHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCC--chheehhhHh-hCCCCCCE
Confidence 466666653 4555532 233456666666666542 444433322 25666666642 3555554432 24566666
Q ss_pred eeecccccccccccCCCCCCCCCCCCCcccccccccccccceeccccccceeeeeccchhcccccEEEecccccc-----
Q 039067 132 LLVRHCDKLKIFAADLSQNNENDQLGIPEQQLLWPLEKSLRVTVDHQLTSLVIMIDDDQIVSNFKELSLSGKDVK----- 206 (304)
Q Consensus 132 L~l~~C~~L~~l~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~~----- 206 (304)
+.+.+ +++.++... |..-.+ . .+.....++.+... .=..+++|+.+++.++...
T Consensus 231 l~l~~--~l~~I~~~a---F~~~~L-----~---------~i~lp~~i~~I~~~--aF~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 231 IEIPE--NVSTIGQEA---FRESGI-----T---------TVKLPNGVTNIASR--AFYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp EECCT--TCCEECTTT---TTTCCC-----S---------EEEEETTCCEECTT--TTTTCTTCCEEEEESSCCCCCTTC
T ss_pred EecCC--CccCccccc---cccCCc-----c---------EEEeCCCccEEChh--HhhCCCCCCEEEeCCccccCCccc
Confidence 66654 344433221 111000 0 00000001000000 0012578888888765432
Q ss_pred ccccccCccccccCcccccccCCCCcccchhhhhhccCccccccccccccceeecccccCcccccCCCCcCCCCCCcccE
Q 039067 207 MILQADFPQHLFGSLKQLEIVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEI 286 (304)
Q Consensus 207 ~~~~~~~~~~~l~~L~~L~~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~ 286 (304)
.+.. ..+.++++|+.+.--.++.. .+ ...+.++++|+.+.|.+ +++.+....+. .+ +|++
T Consensus 290 ~I~~--~aF~~c~~L~~l~l~~~i~~-I~-----------~~aF~~c~~L~~l~lp~--~l~~I~~~aF~---~~-~L~~ 349 (401)
T 4fdw_A 290 MIHP--YCLEGCPKLARFEIPESIRI-LG-----------QGLLGGNRKVTQLTIPA--NVTQINFSAFN---NT-GIKE 349 (401)
T ss_dssp EECT--TTTTTCTTCCEECCCTTCCE-EC-----------TTTTTTCCSCCEEEECT--TCCEECTTSSS---SS-CCCE
T ss_pred EECH--HHhhCCccCCeEEeCCceEE-Eh-----------hhhhcCCCCccEEEECc--cccEEcHHhCC---CC-CCCE
Confidence 1211 23566677777662122322 11 12244678999999954 58888777655 67 8999
Q ss_pred EEEec
Q 039067 287 LEVYY 291 (304)
Q Consensus 287 L~i~~ 291 (304)
|.+.+
T Consensus 350 l~l~~ 354 (401)
T 4fdw_A 350 VKVEG 354 (401)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99875
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.89 E-value=0.00038 Score=63.25 Aligned_cols=194 Identities=12% Similarity=0.042 Sum_probs=99.3
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccC--CCccceeecccCccceecCCCcccCCCCc
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENR--ADQLTTLGLQYLPKLRCLYPGMHTSEWPA 128 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~L~~L~L~~c~~L~~~~~~~~~~~l~~ 128 (304)
+.+|+.+++.+. +++.++...+. ..+|+.+.+.+. ++.+..... .++|+.+.+.+ +++.+...... -.+
T Consensus 179 c~~L~~l~l~~n-~l~~I~~~aF~--~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~--~~~ 249 (401)
T 4fdw_A 179 CYNLKKADLSKT-KITKLPASTFV--YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFR--ESG 249 (401)
T ss_dssp CTTCCEEECTTS-CCSEECTTTTT--TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTT--TCC
T ss_pred cccCCeeecCCC-cceEechhhEe--ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC--CccCccccccc--cCC
Confidence 788999999764 67777544333 478888888643 555554433 26788888864 56666665433 267
Q ss_pred cceeeecccccccccccCC---CCCCCCCCCCCcccccccccccccceeccccccceeeeeccchhcccccEEEeccccc
Q 039067 129 LESLLVRHCDKLKIFAADL---SQNNENDQLGIPEQQLLWPLEKSLRVTVDHQLTSLVIMIDDDQIVSNFKELSLSGKDV 205 (304)
Q Consensus 129 L~~L~l~~C~~L~~l~~~~---~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~ 205 (304)
|+.+.+.+ +++.++... +.+++...+...... ......+.. ..=..+++|+.+++... .
T Consensus 250 L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~-------------~~~~~~I~~--~aF~~c~~L~~l~l~~~-i 311 (401)
T 4fdw_A 250 ITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFN-------------DDPEAMIHP--YCLEGCPKLARFEIPES-I 311 (401)
T ss_dssp CSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCC-------------CCTTCEECT--TTTTTCTTCCEECCCTT-C
T ss_pred ccEEEeCC--CccEEChhHhhCCCCCCEEEeCCcccc-------------CCcccEECH--HHhhCCccCCeEEeCCc-e
Confidence 77777732 244443321 111111111000000 000000000 00012678899888732 2
Q ss_pred cccccccCccccccCcccccccCCCCcccchhhhhhccCccccccccccccceeecccccCcccccCCCCcCCCCC-Ccc
Q 039067 206 KMILQADFPQHLFGSLKQLEIVGDDSTCFPIWNVFSEEGSLEKHVGKLAMIKELKLYRPYHLKQLGKQDSKLGPIF-QYL 284 (304)
Q Consensus 206 ~~~~~~~~~~~~l~~L~~L~~c~~~~~~~p~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~-~~L 284 (304)
..+.. ..+.++++|+.+.--.++..+-. ..+..+ +|+++.+.+. .+..+....+. .+ .++
T Consensus 312 ~~I~~--~aF~~c~~L~~l~lp~~l~~I~~------------~aF~~~-~L~~l~l~~n-~~~~l~~~~F~---~~~~~l 372 (401)
T 4fdw_A 312 RILGQ--GLLGGNRKVTQLTIPANVTQINF------------SAFNNT-GIKEVKVEGT-TPPQVFEKVWY---GFPDDI 372 (401)
T ss_dssp CEECT--TTTTTCCSCCEEEECTTCCEECT------------TSSSSS-CCCEEEECCS-SCCBCCCSSCC---CSCTTC
T ss_pred EEEhh--hhhcCCCCccEEEECccccEEcH------------HhCCCC-CCCEEEEcCC-CCccccccccc---CCCCCc
Confidence 22211 33566777777762222222211 223456 8999999875 44555444333 33 356
Q ss_pred cEEEEe
Q 039067 285 EILEVY 290 (304)
Q Consensus 285 ~~L~i~ 290 (304)
+.|+|.
T Consensus 373 ~~l~vp 378 (401)
T 4fdw_A 373 TVIRVP 378 (401)
T ss_dssp CEEEEC
T ss_pred cEEEeC
Confidence 666664
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.86 E-value=0.00012 Score=64.56 Aligned_cols=112 Identities=14% Similarity=0.128 Sum_probs=65.0
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeecc--------------
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRH-------------- 87 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~-------------- 87 (304)
+++|++|.|.+ +++.+....+.+ +++|+.|++.+. .+..+++.. +..+.++.++....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~-----~~~L~~l~l~~n-~i~~i~~~a-F~~~~~l~~l~~~~~~~~~~~~~i~~~~ 171 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKG-----CDNLKICQIRKK-TAPNLLPEA-LADSVTAIFIPLGSSDAYRFKNRWEHFA 171 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTT-----CTTCCEEEBCCS-SCCEECTTS-SCTTTCEEEECTTCTHHHHTSTTTTTSC
T ss_pred cCCCcEEECCc-cccchhHHHhhc-----CcccceEEcCCC-Cccccchhh-hcCCCceEEecCcchhhhhccccccccc
Confidence 78888888888 777776665554 788999998764 444443322 22334444443222
Q ss_pred ---Cccccc------------hhcc--------------------------cCCCccceeecccCccceecCCCcccCCC
Q 039067 88 ---CEDLQE------------IISE--------------------------NRADQLTTLGLQYLPKLRCLYPGMHTSEW 126 (304)
Q Consensus 88 ---c~~l~~------------l~~~--------------------------~~~~~L~~L~L~~c~~L~~~~~~~~~~~l 126 (304)
|..++. .... ...++|++|++.++ +++.++.... ..+
T Consensus 172 f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF-~~~ 249 (329)
T 3sb4_A 172 FIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTF-AQK 249 (329)
T ss_dssp EEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTT-TTC
T ss_pred cccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhh-hCC
Confidence 222220 0000 00267888888765 4777776653 357
Q ss_pred Cccceeeeccccccccccc
Q 039067 127 PALESLLVRHCDKLKIFAA 145 (304)
Q Consensus 127 ~~L~~L~l~~C~~L~~l~~ 145 (304)
++|+.+.+.+ +++.++.
T Consensus 250 ~~L~~l~l~~--ni~~I~~ 266 (329)
T 3sb4_A 250 KYLLKIKLPH--NLKTIGQ 266 (329)
T ss_dssp TTCCEEECCT--TCCEECT
T ss_pred CCCCEEECCc--ccceehH
Confidence 8888888876 3665543
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.83 E-value=1e-06 Score=71.98 Aligned_cols=84 Identities=17% Similarity=0.246 Sum_probs=62.7
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccC-CCccceeecccCccceecCCCcccCCCCcc
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENR-ADQLTTLGLQYLPKLRCLYPGMHTSEWPAL 129 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~-~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L 129 (304)
+++|++|+++++ .+..++ ....+++|++|++++|. +..++.... .++|+.|+++++ ++++++. ...+++|
T Consensus 47 l~~L~~L~ls~n-~l~~l~---~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~---~~~l~~L 117 (198)
T 1ds9_A 47 LKACKHLALSTN-NIEKIS---SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLSG---IEKLVNL 117 (198)
T ss_dssp TTTCSEEECSEE-EESCCC---CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE-ECCCHHH---HHHHHHS
T ss_pred CCCCCEEECCCC-CCcccc---ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC-cCCcCCc---cccCCCC
Confidence 799999999987 677774 34678999999999985 665553322 278999999887 6666652 2357899
Q ss_pred ceeeecccccccccc
Q 039067 130 ESLLVRHCDKLKIFA 144 (304)
Q Consensus 130 ~~L~l~~C~~L~~l~ 144 (304)
+.|+++++ +++.++
T Consensus 118 ~~L~l~~N-~i~~~~ 131 (198)
T 1ds9_A 118 RVLYMSNN-KITNWG 131 (198)
T ss_dssp SEEEESEE-ECCCHH
T ss_pred CEEECCCC-cCCchh
Confidence 99999988 366543
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.80 E-value=2.3e-05 Score=70.31 Aligned_cols=60 Identities=22% Similarity=0.218 Sum_probs=29.3
Q ss_pred hhcCCcccEEeeccCccccchhcccCCCccceeecccCccceecCCCc-ccCCCCccceeeecc
Q 039067 74 IGSLKQLQHLDIRHCEDLQEIISENRADQLTTLGLQYLPKLRCLYPGM-HTSEWPALESLLVRH 136 (304)
Q Consensus 74 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~L~~c~~L~~~~~~~-~~~~l~~L~~L~l~~ 136 (304)
...+|+|+.|++++|..+. +.. ...++|+.|++..|. +..-.... ....+|+|+.|+++.
T Consensus 168 l~~~P~L~~L~L~g~~~l~-l~~-~~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLS-IGK-KPRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHTCTTCCEEEEECCBTCB-CCS-CBCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred HhcCCCCcEEEEeCCCCce-ecc-ccCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEec
Confidence 3456777777777663322 111 113667777776542 22111100 012467777777653
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.57 E-value=0.00022 Score=63.05 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=62.2
Q ss_pred cccCCccceeeecc-eeeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcc
Q 039067 19 KVALPNLEALEISE-INVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISE 97 (304)
Q Consensus 19 ~~~~~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~ 97 (304)
+..+++|++|+|++ +++..+....... +++|+.|+|+++ ++..+++ ..+..+++|++|+++++. +..++..
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~-----l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~~~ 98 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRG-----LGELRNLTIVKS-GLRFVAP-DAFHFTPRLSRLNLSFNA-LESLSWK 98 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCS-----CCCCSEEECCSS-CCCEECT-TGGGSCSCCCEEECCSSC-CSCCCST
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhcc-----ccCCCEEECCCC-ccceeCH-HHhcCCcCCCEEeCCCCc-cceeCHH
Confidence 34578899999996 7887776543333 899999999986 7888854 344688999999999985 7766544
Q ss_pred cC-CCccceeecccC
Q 039067 98 NR-ADQLTTLGLQYL 111 (304)
Q Consensus 98 ~~-~~~L~~L~L~~c 111 (304)
.. ...|+.|.+.+.
T Consensus 99 ~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 99 TVQGLSLQELVLSGN 113 (347)
T ss_dssp TTCSCCCCEEECCSS
T ss_pred HcccCCceEEEeeCC
Confidence 32 234888888765
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.54 E-value=0.00018 Score=63.69 Aligned_cols=100 Identities=19% Similarity=0.205 Sum_probs=73.0
Q ss_pred eeeecce-eeeeecccCCCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--CCCcc
Q 039067 27 ALEISEI-NVNKIWHYNHLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--RADQL 103 (304)
Q Consensus 27 ~L~L~~~-~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~~~L 103 (304)
.++.++. +++.++. ... +.+|++|+|+++..+..+++ ..+..+++|++|+++++. +..++... ..++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~------~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L 82 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPG------AENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRL 82 (347)
T ss_dssp CEECCSSCCCTTTTT-SCS------CSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCC
T ss_pred EEEcCCCCCCCccCC-CCC------CCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCCc-cceeCHHHhcCCcCC
Confidence 3455665 6766665 222 78999999997668888854 445789999999999995 87776543 34899
Q ss_pred ceeecccCccceecCCCcccCCCCccceeeecccc
Q 039067 104 TTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCD 138 (304)
Q Consensus 104 ~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~ 138 (304)
+.|+|++. +|+.++..... .+ .|+.|++.+.+
T Consensus 83 ~~L~l~~N-~l~~~~~~~~~-~~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 83 SRLNLSFN-ALESLSWKTVQ-GL-SLQELVLSGNP 114 (347)
T ss_dssp CEEECCSS-CCSCCCSTTTC-SC-CCCEEECCSSC
T ss_pred CEEeCCCC-ccceeCHHHcc-cC-CceEEEeeCCC
Confidence 99999987 78888765421 23 39999998764
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.25 E-value=0.00034 Score=62.67 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=65.2
Q ss_pred ccCCccceeeecceeee---eecccC-CCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCcccc-ch
Q 039067 20 VALPNLEALEISEINVN---KIWHYN-HLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQ-EI 94 (304)
Q Consensus 20 ~~~~~L~~L~L~~~~l~---~~~~~~-~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~-~l 94 (304)
..|++|+.|.+.+.... -.|... ....+-+.+|+|+.|.+.++..+ .+++ . .+++|++|++..|. +. ..
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~---~-~~~~L~~L~L~~~~-l~~~~ 209 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK---K-PRPNLKSLEIISGG-LPDSV 209 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS---C-BCTTCSEEEEECSB-CCHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc---c-cCCCCcEEEEecCC-CChHH
Confidence 35899999998765221 113221 00000012799999999987444 3322 1 37899999998875 32 11
Q ss_pred h---cccCCCccceeecccCcc-------ceecCCCcccCCCCccceeeecccc
Q 039067 95 I---SENRADQLTTLGLQYLPK-------LRCLYPGMHTSEWPALESLLVRHCD 138 (304)
Q Consensus 95 ~---~~~~~~~L~~L~L~~c~~-------L~~~~~~~~~~~l~~L~~L~l~~C~ 138 (304)
. .....|+|+.|+|+...+ ++.+........+|+|+.|.+.+|.
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 1 112348999999863221 2122111111258999999998874
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.06 E-value=3.5e-05 Score=69.42 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=67.8
Q ss_pred CCccceeeecceeeeeecccC-----CCCCccCCCCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhc
Q 039067 22 LPNLEALEISEINVNKIWHYN-----HLPVMFPRFQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIIS 96 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~ 96 (304)
+++|+.|+|++|++....... ... .++|++|++++| .+........+..+++|++|++++|. +.....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~-----~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~ 143 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSG-----RHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNS-LGPEAC 143 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSC-----SSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhC-----CCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHH
Confidence 578999999999765421111 111 468999999987 45443222334456788999999885 532211
Q ss_pred -----c--cCCCccceeecccCccceecCCCc---ccCCCCccceeeecccccccc
Q 039067 97 -----E--NRADQLTTLGLQYLPKLRCLYPGM---HTSEWPALESLLVRHCDKLKI 142 (304)
Q Consensus 97 -----~--~~~~~L~~L~L~~c~~L~~~~~~~---~~~~l~~L~~L~l~~C~~L~~ 142 (304)
. ...++|++|++++| .+....... .....++|++|++++|. ++.
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~ 197 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGD 197 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHH
T ss_pred HHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCc
Confidence 1 12378999999888 454322111 01246788889888884 553
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.94 E-value=8.4e-05 Score=66.88 Aligned_cols=12 Identities=17% Similarity=0.692 Sum_probs=7.1
Q ss_pred CcccEEeeccCc
Q 039067 78 KQLQHLDIRHCE 89 (304)
Q Consensus 78 ~~L~~L~i~~c~ 89 (304)
++|++|++++|.
T Consensus 101 ~~L~~L~Ls~n~ 112 (372)
T 3un9_A 101 HALDEVNLASCQ 112 (372)
T ss_dssp SCEEEEECTTCC
T ss_pred CCceEEEecCCC
Confidence 456666666664
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.80 E-value=0.12 Score=46.17 Aligned_cols=49 Identities=4% Similarity=-0.035 Sum_probs=26.6
Q ss_pred cccccccceeecccccCcccccCCCCcCCCCCCcccEEEEec----------CCCceeccCCCC
Q 039067 250 VGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYY----------CARNAESSTPNN 303 (304)
Q Consensus 250 ~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~----------C~~L~~l~~~~~ 303 (304)
+.++.+|+++.|-+ +++.+....+. .|.+|+++++.+ |..|+.+.-|++
T Consensus 330 F~~C~~L~~i~ip~--sv~~I~~~aF~---~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 330 FAGCEQLERIAIPS--SVTKIPESAFS---NCTALNNIEYSGSRSQWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTTCTTCCEEEECT--TCCBCCGGGGT---TCTTCCEEEESSCHHHHHTCBCCCCC--------
T ss_pred hhCCCCCCEEEECc--ccCEEhHhHhh---CCCCCCEEEECCceeehhhhhccCCCCEEEeCCC
Confidence 44567777777742 46666555444 778888887653 677777766543
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.59 E-value=0.029 Score=50.33 Aligned_cols=48 Identities=13% Similarity=0.179 Sum_probs=29.0
Q ss_pred cccccccceeecccccCcccccCCCCcCCCCCCcccEEEE------------ecCCCceeccCCC
Q 039067 250 VGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEV------------YYCARNAESSTPN 302 (304)
Q Consensus 250 ~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i------------~~C~~L~~l~~~~ 302 (304)
+..+++|+.++|.+ +++.+....+. .|.+|+++.+ .+|.+|+++.-|+
T Consensus 316 F~~c~~L~~i~lp~--~v~~I~~~aF~---~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 316 FESCTSLVSIDLPY--LVEEIGKRSFR---GCTSLSNINFPLSLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTCTTCCEECCCT--TCCEECTTTTT---TCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEG
T ss_pred hcCCCCCCEEEeCC--cccEEhHHhcc---CCCCCCEEEECccccEehHHHhhCCCCCCEEEECC
Confidence 44567777777742 46666555443 5566666654 3577777776554
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.46 E-value=0.2 Score=44.72 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=25.5
Q ss_pred cccccccceeecccccCcccccCCCCcCCCCCCcccEEEEec
Q 039067 250 VGKLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEVYY 291 (304)
Q Consensus 250 ~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i~~ 291 (304)
+.++++|+++.+.. +++.+....+. .|++|+++++..
T Consensus 339 F~~c~~L~~i~lp~--~l~~I~~~aF~---~C~~L~~i~lp~ 375 (394)
T 4fs7_A 339 FRGCTSLSNINFPL--SLRKIGANAFQ---GCINLKKVELPK 375 (394)
T ss_dssp TTTCTTCCEECCCT--TCCEECTTTBT---TCTTCCEEEEEG
T ss_pred ccCCCCCCEEEECc--cccEehHHHhh---CCCCCCEEEECC
Confidence 44677888887753 47777666554 778888887753
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.74 E-value=0.0087 Score=51.03 Aligned_cols=60 Identities=18% Similarity=0.131 Sum_probs=36.6
Q ss_pred CCCccEEeeccCcccccccch-hhhhcCCcccEEeeccCccccchhcccCC--CccceeecccCc
Q 039067 51 FQNLTRLIVWRCHKLKYIFSA-SMIGSLKQLQHLDIRHCEDLQEIISENRA--DQLTTLGLQYLP 112 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~-~~~~~l~~L~~L~i~~c~~l~~l~~~~~~--~~L~~L~L~~c~ 112 (304)
+++|+.|+++++ ++..+... .....+++|+.|+++++. +..+..-... .+|++|.+++.+
T Consensus 169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTSCCSEEECTTST
T ss_pred CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccCCcceEEccCCc
Confidence 778888888775 56665322 233567888888887774 4433111111 277788887765
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.62 E-value=0.013 Score=46.85 Aligned_cols=111 Identities=13% Similarity=0.080 Sum_probs=64.3
Q ss_pred ccCCccceeeecce-eeeeecccC---CCCCccCCCCCccEEeeccCcccccccch---hhhhcCCcccEEeeccCcccc
Q 039067 20 VALPNLEALEISEI-NVNKIWHYN---HLPVMFPRFQNLTRLIVWRCHKLKYIFSA---SMIGSLKQLQHLDIRHCEDLQ 92 (304)
Q Consensus 20 ~~~~~L~~L~L~~~-~l~~~~~~~---~~~~~~~~~~~L~~L~l~~C~~l~~l~~~---~~~~~l~~L~~L~i~~c~~l~ 92 (304)
...++|++|+|++| ++..-.... .... .++|++|++++| .+..-... ......+.|++|++++|. +.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~----~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~ 106 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKT----NTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-IS 106 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTT----CCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHh----CCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence 34788999999998 775421111 1111 588999999987 45432111 123345789999999985 43
Q ss_pred c-----hhcc-cCCCccceeec--ccCccceecCCC---cccCCCCccceeeeccc
Q 039067 93 E-----IISE-NRADQLTTLGL--QYLPKLRCLYPG---MHTSEWPALESLLVRHC 137 (304)
Q Consensus 93 ~-----l~~~-~~~~~L~~L~L--~~c~~L~~~~~~---~~~~~l~~L~~L~l~~C 137 (304)
. +... ...+.|++|++ +++ .+...... ......++|++|++++|
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 2 1111 11278999999 444 33322110 01113467888888877
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.10 E-value=0.13 Score=43.67 Aligned_cols=63 Identities=19% Similarity=0.165 Sum_probs=43.8
Q ss_pred hcCCcccEEeeccCccccchhccc----CCCccceeecccCccceecCCCcccCCCCccceeeeccccccc
Q 039067 75 GSLKQLQHLDIRHCEDLQEIISEN----RADQLTTLGLQYLPKLRCLYPGMHTSEWPALESLLVRHCDKLK 141 (304)
Q Consensus 75 ~~l~~L~~L~i~~c~~l~~l~~~~----~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~L~~L~l~~C~~L~ 141 (304)
..+++|+.|+++++. +..+..-. ..++|+.|+|++. +++++........+ +|++|.+.+.+ +.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Np-l~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNS-LC 233 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTST-TG
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCc-Cc
Confidence 468999999999996 66544322 2499999999886 56665322111123 89999999986 54
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=87.00 E-value=0.7 Score=34.35 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=23.9
Q ss_pred CCccEEeeccCcccccccchhhhhcCCcccEEeeccCc
Q 039067 52 QNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCE 89 (304)
Q Consensus 52 ~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~ 89 (304)
++|++|+|++. +++.++ ...+..+++|++|++++++
T Consensus 31 ~~l~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALP-PGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTS-CCSSCC-TTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCC-cCCccC-hhhhhhccccCEEEecCCC
Confidence 46777777764 677763 3444567777777777654
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=86.33 E-value=0.17 Score=40.16 Aligned_cols=84 Identities=14% Similarity=0.060 Sum_probs=53.1
Q ss_pred ccCCccceeeecceeeeeec-----ccCCCCCccCCCCCccEEeeccCcccccccc---hhhhhcCCcccEEee--ccCc
Q 039067 20 VALPNLEALEISEINVNKIW-----HYNHLPVMFPRFQNLTRLIVWRCHKLKYIFS---ASMIGSLKQLQHLDI--RHCE 89 (304)
Q Consensus 20 ~~~~~L~~L~L~~~~l~~~~-----~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~---~~~~~~l~~L~~L~i--~~c~ 89 (304)
...++|++|+|++|++.+-. ..... .++|++|++++| .+..-.. .......+.|++|++ ++|.
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~------n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKV------NNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHH------CSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHh------CCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 34689999999999765421 11111 588999999997 4544211 122345678999999 6664
Q ss_pred cccch-----hcc-cCCCccceeecccC
Q 039067 90 DLQEI-----ISE-NRADQLTTLGLQYL 111 (304)
Q Consensus 90 ~l~~l-----~~~-~~~~~L~~L~L~~c 111 (304)
+..- ... ...+.|++|+++++
T Consensus 135 -i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 135 -LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred -CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 4321 110 11278999999876
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=86.19 E-value=2.7 Score=36.84 Aligned_cols=77 Identities=14% Similarity=0.177 Sum_probs=35.2
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhccc--CCCccceeecccCccceecCCCcccCCCCc
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISEN--RADQLTTLGLQYLPKLRCLYPGMHTSEWPA 128 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~~~L~~L~L~~c~~L~~~~~~~~~~~l~~ 128 (304)
+.+|+.+.+.. .++.+.. .....+.+|+.+.+... +..+.... +..+|+.+.+.+. .++.+..... ..+++
T Consensus 239 ~~~L~~i~lp~--~v~~I~~-~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF-~~c~~ 311 (379)
T 4h09_A 239 MKALDEIAIPK--NVTSIGS-FLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVF-MDCVK 311 (379)
T ss_dssp CSSCCEEEECT--TCCEECT-TTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCT-TCCEECTTTT-TTCTT
T ss_pred CccceEEEcCC--CccEeCc-cccceeehhcccccccc--ceecccccccccccccccccccc-ccceehhhhh-cCCCC
Confidence 56667766653 3444422 22345556666665432 33332221 1245555555432 3444443332 13455
Q ss_pred cceeee
Q 039067 129 LESLLV 134 (304)
Q Consensus 129 L~~L~l 134 (304)
|+.+.+
T Consensus 312 L~~i~l 317 (379)
T 4h09_A 312 LSSVTL 317 (379)
T ss_dssp CCEEEC
T ss_pred CCEEEc
Confidence 555555
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=82.64 E-value=8.5 Score=33.58 Aligned_cols=11 Identities=9% Similarity=0.166 Sum_probs=4.8
Q ss_pred cCCcccEEeec
Q 039067 76 SLKQLQHLDIR 86 (304)
Q Consensus 76 ~l~~L~~L~i~ 86 (304)
.+.+|+.+.+.
T Consensus 284 ~c~~L~~i~l~ 294 (379)
T 4h09_A 284 GCSNLTKVVMD 294 (379)
T ss_dssp TCTTCCEEEEC
T ss_pred ccccccccccc
Confidence 34444444443
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=81.06 E-value=5 Score=35.44 Aligned_cols=76 Identities=11% Similarity=0.101 Sum_probs=36.8
Q ss_pred CCCccEEeeccCcccccccchhhhhcCCcccEEeeccCccccchhcccC--CCccceeecccCccceecCCCcccCCCCc
Q 039067 51 FQNLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRHCEDLQEIISENR--ADQLTTLGLQYLPKLRCLYPGMHTSEWPA 128 (304)
Q Consensus 51 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~L~~L~L~~c~~L~~~~~~~~~~~l~~ 128 (304)
+.+|+.+.+.. .++.+. ......++.|+.+.+.. .+..+..... ..+|+++.+.+ +++.+...+. ..+.+
T Consensus 264 c~~L~~i~lp~--~~~~I~-~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF-~~C~~ 335 (394)
T 4gt6_A 264 CAYLASVKMPD--SVVSIG-TGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAF-AGCEQ 335 (394)
T ss_dssp CSSCCEEECCT--TCCEEC-TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTT-TTCTT
T ss_pred cccccEEeccc--ccceec-CcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHh-hCCCC
Confidence 56666666643 233342 22234556666666642 2444433222 14566666642 3444444332 24566
Q ss_pred cceeee
Q 039067 129 LESLLV 134 (304)
Q Consensus 129 L~~L~l 134 (304)
|+.+.|
T Consensus 336 L~~i~i 341 (394)
T 4gt6_A 336 LERIAI 341 (394)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 666665
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=79.55 E-value=1.2 Score=32.96 Aligned_cols=37 Identities=8% Similarity=-0.129 Sum_probs=30.4
Q ss_pred CCccceeeecceeeeeecccCCCCCccCCCCCccEEeeccCc
Q 039067 22 LPNLEALEISEINVNKIWHYNHLPVMFPRFQNLTRLIVWRCH 63 (304)
Q Consensus 22 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~C~ 63 (304)
.++|+.|+|++++|+.+..+.+.. +++|++|+|.+.+
T Consensus 30 p~~l~~L~Ls~N~l~~l~~~~f~~-----l~~L~~L~L~~NP 66 (130)
T 3rfe_A 30 PVDTTELVLTGNNLTALPPGLLDA-----LPALRTAHLGANP 66 (130)
T ss_dssp CTTCSEEECTTSCCSSCCTTTGGG-----CTTCCEEECCSSC
T ss_pred CcCCCEEECCCCcCCccChhhhhh-----ccccCEEEecCCC
Confidence 568999999999998887665444 7999999998753
No 163
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.16 E-value=31 Score=23.95 Aligned_cols=33 Identities=18% Similarity=0.070 Sum_probs=14.5
Q ss_pred cccccceeecccccCcccccCCCCcCCCCCCcccEEEE
Q 039067 252 KLAMIKELKLYRPYHLKQLGKQDSKLGPIFQYLEILEV 289 (304)
Q Consensus 252 ~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~L~~L~i 289 (304)
++++|+++.|-. .++.|....+. .|.+|+++.+
T Consensus 18 ~c~~L~~i~iP~--~v~~Ig~~aF~---~C~~L~~i~~ 50 (100)
T 2lz0_A 18 GNTVIREITVQP--NIGLLYDGMFS---GCTALEKLIL 50 (100)
T ss_dssp TCTTCCCEEECT--TSSCCCTTSST---TCTTCCCEEE
T ss_pred CCCCCcEEEcCC--chheEcHHHHh---ccCCccEEEE
Confidence 444455444432 34444444333 4444444444
Done!