Query 039068
Match_columns 166
No_of_seqs 154 out of 1059
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 06:00:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 99.9 4.2E-24 9.1E-29 196.4 9.3 96 70-165 6-104 (557)
2 KOG4441 Proteins containing BT 99.9 6.1E-23 1.3E-27 190.0 9.3 100 65-165 12-115 (571)
3 PHA02790 Kelch-like protein; P 99.8 1.5E-21 3.3E-26 176.0 6.0 86 77-165 10-101 (480)
4 PF00651 BTB: BTB/POZ domain; 99.8 6.3E-20 1.4E-24 131.8 6.7 86 80-165 1-92 (111)
5 PHA03098 kelch-like protein; P 99.8 1.1E-18 2.3E-23 157.1 6.6 76 86-165 6-86 (534)
6 KOG4350 Uncharacterized conser 99.7 1.3E-17 2.9E-22 150.7 5.2 93 73-166 28-127 (620)
7 smart00225 BTB Broad-Complex, 99.7 1.6E-16 3.4E-21 107.2 7.1 74 91-165 1-78 (90)
8 KOG2075 Topoisomerase TOP1-int 99.4 6.5E-13 1.4E-17 121.5 9.3 101 64-164 89-197 (521)
9 KOG4591 Uncharacterized conser 98.9 1.7E-09 3.7E-14 91.2 4.8 83 70-155 47-131 (280)
10 KOG0783 Uncharacterized conser 98.7 2.4E-09 5.3E-14 103.7 0.4 67 87-155 708-777 (1267)
11 KOG0783 Uncharacterized conser 98.7 2.3E-08 5E-13 97.1 4.8 77 76-153 541-633 (1267)
12 KOG2838 Uncharacterized conser 98.2 2.2E-06 4.8E-11 75.4 4.9 79 76-155 117-197 (401)
13 KOG4682 Uncharacterized conser 98.1 3.4E-06 7.5E-11 76.9 4.9 83 79-163 59-155 (488)
14 KOG2838 Uncharacterized conser 97.9 1.7E-05 3.7E-10 69.8 4.5 78 78-155 224-327 (401)
15 PF03931 Skp1_POZ: Skp1 family 97.6 0.0002 4.4E-09 48.4 6.2 56 92-150 3-58 (62)
16 smart00512 Skp1 Found in Skp1 97.1 0.0011 2.3E-08 48.7 5.1 60 91-151 3-63 (104)
17 KOG3473 RNA polymerase II tran 96.7 0.0041 8.9E-08 47.2 5.4 73 92-165 19-108 (112)
18 KOG1778 CREB binding protein/P 96.6 0.00067 1.5E-08 60.1 0.5 74 91-165 27-106 (319)
19 KOG0511 Ankyrin repeat protein 96.5 0.0017 3.8E-08 59.4 2.7 55 100-155 301-359 (516)
20 KOG1987 Speckle-type POZ prote 96.1 0.00078 1.7E-08 56.7 -1.8 65 89-153 98-163 (297)
21 PF02214 BTB_2: BTB/POZ domain 95.4 0.017 3.7E-07 41.0 3.1 62 92-155 1-67 (94)
22 KOG0511 Ankyrin repeat protein 93.1 0.03 6.4E-07 51.6 0.4 62 89-152 149-210 (516)
23 KOG1724 SCF ubiquitin ligase, 89.1 1 2.2E-05 36.5 5.4 61 92-153 7-67 (162)
24 KOG2716 Polymerase delta-inter 89.1 0.87 1.9E-05 38.9 5.3 62 92-155 7-70 (230)
25 KOG2714 SETA binding protein S 87.0 1.3 2.9E-05 41.2 5.5 63 92-155 13-78 (465)
26 PF04343 DUF488: Protein of un 59.6 12 0.00025 27.9 3.2 37 74-111 84-120 (122)
27 COG5201 SKP1 SCF ubiquitin lig 46.1 34 0.00073 27.5 3.9 57 91-150 3-59 (158)
28 KOG1665 AFH1-interacting prote 44.6 31 0.00068 30.2 3.8 63 92-155 11-77 (302)
29 PRK13782 phosphocarrier protei 38.4 1.4E+02 0.003 20.9 6.2 53 87-149 28-81 (82)
30 KOG3863 bZIP transcription fac 36.1 3.8 8.3E-05 39.5 -3.3 37 79-121 4-40 (604)
31 PF02519 Auxin_inducible: Auxi 34.9 90 0.002 23.1 4.6 55 92-149 41-99 (100)
32 KOG3840 Uncharaterized conserv 24.6 2.2E+02 0.0047 26.2 5.9 79 74-155 82-165 (438)
33 PF00978 RdRP_2: RNA dependent 24.1 69 0.0015 29.3 2.8 53 99-151 156-209 (440)
34 PRK10897 phosphohistidinoprote 23.7 2.8E+02 0.0061 19.9 6.0 56 87-151 29-85 (90)
35 PF11822 DUF3342: Domain of un 22.5 73 0.0016 28.6 2.5 55 99-153 13-69 (317)
36 cd00367 PTS-HPr_like Histidine 21.8 2.6E+02 0.0057 18.8 5.8 53 87-149 24-77 (77)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.90 E-value=4.2e-24 Score=196.40 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=87.6
Q ss_pred CCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCc-cceEEeCCCCHHHHHHHHHh
Q 039068 70 SFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNND-FIYIKIPGVPHEAVYAFVRF 148 (166)
Q Consensus 70 ~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~-~~~I~I~gV~~~~l~~lL~F 148 (166)
..|+..+++.|++||+++.+|||+|++++|++|+|||+||||+||||++||+++|+|.. +++|.|+|+++++|+.+|+|
T Consensus 6 ~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y 85 (557)
T PHA02713 6 IKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQY 85 (557)
T ss_pred hhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHH
Confidence 45788999999999999999999999965789999999999999999999999999764 78899999999999999999
Q ss_pred HcCCchh--HHHHhhcccC
Q 039068 149 LYSSWYS--FVTKLLQLKT 165 (166)
Q Consensus 149 lYTg~i~--~a~~LL~lah 165 (166)
+|||+++ +++.||.+|+
T Consensus 86 ~Yt~~i~~~nv~~ll~aA~ 104 (557)
T PHA02713 86 LYNRHISSMNVIDVLKCAD 104 (557)
T ss_pred hcCCCCCHHHHHHHHHHHH
Confidence 9999987 7777777764
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.88 E-value=6.1e-23 Score=190.00 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=91.6
Q ss_pred cCCCCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHH
Q 039068 65 RFLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYA 144 (166)
Q Consensus 65 ~~~~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~ 144 (166)
.......|+..+++.|+.||+++.+|||+|.++ +++|+|||+||||+|||||+||+++++|..+++|.|.||++++|+.
T Consensus 12 ~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~-~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ 90 (571)
T KOG4441|consen 12 SEFTDPSHSKFLLQGLNELREEGLLCDVTLLVG-DREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLEL 90 (571)
T ss_pred cccccHHHHHHHHHHHHHHHHhCCCceEEEEEC-CeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHH
Confidence 344567799999999999999999999999995 5999999999999999999999999999999999999999999999
Q ss_pred HHHhHcCCchh----HHHHhhcccC
Q 039068 145 FVRFLYSSWYS----FVTKLLQLKT 165 (166)
Q Consensus 145 lL~FlYTg~i~----~a~~LL~lah 165 (166)
+|+|+|||+++ +|+.||.+|+
T Consensus 91 ll~y~Yt~~i~i~~~nVq~ll~aA~ 115 (571)
T KOG4441|consen 91 LLDYAYTGKLEISEDNVQELLEAAS 115 (571)
T ss_pred HHHHhhcceEEechHhHHHHHHHHH
Confidence 99999999997 7777776653
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.84 E-value=1.5e-21 Score=176.00 Aligned_cols=86 Identities=19% Similarity=0.102 Sum_probs=74.0
Q ss_pred HHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEe--CCCCHHHHHHHHHhHcCCch
Q 039068 77 KDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKI--PGVPHEAVYAFVRFLYSSWY 154 (166)
Q Consensus 77 l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I--~gV~~~~l~~lL~FlYTg~i 154 (166)
.+..-.||.+|.+|||++.+ |++|+|||+||||+|||||+||+++|+|+++ .|.+ .||++++|+.||+|+|||++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~--~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l 86 (480)
T PHA02790 10 CKNILALSMTKKFKTIIEAI--GGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKV 86 (480)
T ss_pred hhhHHHHHhhhhhceEEEEc--CcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeE
Confidence 34556789999999999886 5789999999999999999999999998854 4655 49999999999999999999
Q ss_pred h----HHHHhhcccC
Q 039068 155 S----FVTKLLQLKT 165 (166)
Q Consensus 155 ~----~a~~LL~lah 165 (166)
. +|+.||++|.
T Consensus 87 ~it~~nV~~ll~aA~ 101 (480)
T PHA02790 87 YIDSHNVVNLLRASI 101 (480)
T ss_pred EEecccHHHHHHHHH
Confidence 7 7777776653
No 4
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.80 E-value=6.3e-20 Score=131.77 Aligned_cols=86 Identities=29% Similarity=0.410 Sum_probs=73.2
Q ss_pred HHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCC-CCCCccceEEeCCCCHHHHHHHHHhHcCCchh---
Q 039068 80 WDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQS-KVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS--- 155 (166)
Q Consensus 80 l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~-~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~--- 155 (166)
|+++++++.++|++|.++||..|+|||.||+++||||+.||+.. +++....+|.+.++++++++.+|+|+|+|++.
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 68899999999999999658999999999999999999999998 56666668999999999999999999999764
Q ss_pred --HHHHhhcccC
Q 039068 156 --FVTKLLQLKT 165 (166)
Q Consensus 156 --~a~~LL~lah 165 (166)
++..+|.+|+
T Consensus 81 ~~~~~~ll~lA~ 92 (111)
T PF00651_consen 81 DENVEELLELAD 92 (111)
T ss_dssp TTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 6777776654
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.75 E-value=1.1e-18 Score=157.10 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=69.2
Q ss_pred hCCCccEEEEc-CCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCchh----HHHHh
Q 039068 86 EGNGADVYAVT-EDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS----FVTKL 160 (166)
Q Consensus 86 e~~l~DV~I~v-~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~----~a~~L 160 (166)
++.+|||+|.+ .+|++|+|||+||||+||||++||+++++ +.+|.|++ ++++|+.||+|+|||+++ ++.+|
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~l 81 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDI 81 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHH
Confidence 88999999987 35799999999999999999999999987 56799999 999999999999999986 88888
Q ss_pred hcccC
Q 039068 161 LQLKT 165 (166)
Q Consensus 161 L~lah 165 (166)
|.+|+
T Consensus 82 l~~A~ 86 (534)
T PHA03098 82 LSIAN 86 (534)
T ss_pred HHHHH
Confidence 88775
No 6
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.69 E-value=1.3e-17 Score=150.68 Aligned_cols=93 Identities=24% Similarity=0.359 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCC
Q 039068 73 PKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSS 152 (166)
Q Consensus 73 ~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg 152 (166)
+...-+.+++|+-...++||++++++ ++|||||+||||||.|||||+-++|.|+.++.|.+++-..++|+++|+|+|||
T Consensus 28 ~~~fS~~~~~l~~~e~y~DVtfvve~-~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg 106 (620)
T KOG4350|consen 28 SNNFSQSFDELFTSEDYSDVTFVVED-TRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTG 106 (620)
T ss_pred ccchhHHHHHHhhcCcccceEEEEec-cccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhc
Confidence 33446789999999999999999965 78999999999999999999999999999999999999999999999999999
Q ss_pred chh-------HHHHhhcccCC
Q 039068 153 WYS-------FVTKLLQLKTN 166 (166)
Q Consensus 153 ~i~-------~a~~LL~lah~ 166 (166)
++. -.++.|.||||
T Consensus 107 ~~~l~~~~ed~lld~LslAh~ 127 (620)
T KOG4350|consen 107 KIDLAGVEEDILLDYLSLAHR 127 (620)
T ss_pred ceecccchHHHHHHHHHHHHh
Confidence 987 57788888886
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.67 E-value=1.6e-16 Score=107.19 Aligned_cols=74 Identities=24% Similarity=0.321 Sum_probs=65.8
Q ss_pred cEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCchh----HHHHhhcccC
Q 039068 91 DVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS----FVTKLLQLKT 165 (166)
Q Consensus 91 DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~----~a~~LL~lah 165 (166)
||+|.+ +|+.|++||.+|+++|+||++||.+.+.+.....|.+.++++++++.+|+|+|++++. ++..++.+|+
T Consensus 1 dv~i~v-~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~ 78 (90)
T smart00225 1 DVTLVV-GGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELAD 78 (90)
T ss_pred CeEEEE-CCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHH
Confidence 789988 5789999999999999999999999887767788999999999999999999999986 6677776654
No 8
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.42 E-value=6.5e-13 Score=121.49 Aligned_cols=101 Identities=24% Similarity=0.295 Sum_probs=89.3
Q ss_pred CcCCCCCCchHHHHHHHHHHHhhCCCccEEEEcCC----CeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCH
Q 039068 64 SRFLHCSFVPKETKDVWDKLFKEGNGADVYAVTED----KSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPH 139 (166)
Q Consensus 64 ~~~~~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~----G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~ 139 (166)
+.+.+|+---..+.+....|+++..++||.+++++ -+.|||||-|||..|.+|.+||.+++.+....+|.+++|++
T Consensus 89 ~~~~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvep 168 (521)
T KOG2075|consen 89 RGIPNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEP 168 (521)
T ss_pred ccCcccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcCh
Confidence 35777888888899999999999999999999863 36799999999999999999999999988678999999999
Q ss_pred HHHHHHHHhHcCCchh----HHHHhhccc
Q 039068 140 EAVYAFVRFLYSSWYS----FVTKLLQLK 164 (166)
Q Consensus 140 ~~l~~lL~FlYTg~i~----~a~~LL~la 164 (166)
+++..+|+|+|++.+. +++.+|.+|
T Consensus 169 aaFl~~L~flYsdev~~~~dtvi~tl~~A 197 (521)
T KOG2075|consen 169 AAFLAFLRFLYSDEVKLAADTVITTLYAA 197 (521)
T ss_pred hHhHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 9999999999999886 666666554
No 9
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.89 E-value=1.7e-09 Score=91.20 Aligned_cols=83 Identities=13% Similarity=0.138 Sum_probs=67.6
Q ss_pred CCchHHHHHHHHHHHhhCCCccEEEEcCC--CeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHH
Q 039068 70 SFVPKETKDVWDKLFKEGNGADVYAVTED--KSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVR 147 (166)
Q Consensus 70 ~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~--G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~ 147 (166)
.+.+..++..-..|....+++|+++.++| .+.|||||.||||||++.+ |.++..| ......+.+++++++...|+
T Consensus 47 dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~dDad~Ea~~t~iR 123 (280)
T KOG4591|consen 47 DSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDLDDADFEAFHTAIR 123 (280)
T ss_pred hhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhcccccCHHHHHHhhe
Confidence 34577788888999999999999999863 3679999999999999876 3333322 23456778999999999999
Q ss_pred hHcCCchh
Q 039068 148 FLYSSWYS 155 (166)
Q Consensus 148 FlYTg~i~ 155 (166)
|+||++++
T Consensus 124 WIYTDEid 131 (280)
T KOG4591|consen 124 WIYTDEID 131 (280)
T ss_pred eeeccccc
Confidence 99999987
No 10
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.72 E-value=2.4e-09 Score=103.71 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=55.4
Q ss_pred CCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCC--HHHHHHHHHhHc-CCchh
Q 039068 87 GNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVP--HEAVYAFVRFLY-SSWYS 155 (166)
Q Consensus 87 ~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~--~~~l~~lL~FlY-Tg~i~ 155 (166)
...-|++|...||++++|||++|+||+.||..||..-|.|+.. |.+.+++ .+.|+.+|+|+| +.+.+
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m~ivLdylYs~d~~~ 777 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHMSIVLDYLYSDDKVE 777 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHHHHHHHHHHccchHH
Confidence 3455777777789999999999999999999999998877654 6666666 999999999999 45554
No 11
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.65 E-value=2.3e-08 Score=97.10 Aligned_cols=77 Identities=23% Similarity=0.280 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhCC----CccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCcc------------ceEEeCCCCH
Q 039068 76 TKDVWDKLFKEGN----GADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDF------------IYIKIPGVPH 139 (166)
Q Consensus 76 ~l~~l~~Lr~e~~----l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~------------~~I~I~gV~~ 139 (166)
.-..+.+|..+.. .-||++.| |++-|+|||.||+++|++||.+|....+.+.. .+|.+.++++
T Consensus 541 fe~sf~kLl~e~~~~ds~hDVtf~v-g~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p 619 (1267)
T KOG0783|consen 541 FEGSFPKLLSEENYKDSFHDVTFYV-GTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPP 619 (1267)
T ss_pred chhhhHHHhhccccccccceEEEEe-cCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCH
Confidence 3445777776655 56899999 57899999999999999999999775543221 2456889999
Q ss_pred HHHHHHHHhHcCCc
Q 039068 140 EAVYAFVRFLYSSW 153 (166)
Q Consensus 140 ~~l~~lL~FlYTg~ 153 (166)
.+|+.||+|+||+.
T Consensus 620 ~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 620 LMFEILLHYIYTDT 633 (1267)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999999994
No 12
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.17 E-value=2.2e-06 Score=75.36 Aligned_cols=79 Identities=16% Similarity=0.298 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCc--cceEEeCCCCHHHHHHHHHhHcCCc
Q 039068 76 TKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNND--FIYIKIPGVPHEAVYAFVRFLYSSW 153 (166)
Q Consensus 76 ~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~--~~~I~I~gV~~~~l~~lL~FlYTg~ 153 (166)
.+..+..+....+..||-|... -..|||||++||+|+|+|+-+...+..-.. .-.|+.-|++-+++++||+|+|||+
T Consensus 117 f~kD~ad~ye~k~c~dldiiFk-eTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgE 195 (401)
T KOG2838|consen 117 FLKDFADGYERKVCGDLDIIFK-ETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGE 195 (401)
T ss_pred HHHHHhhhhheeeeccceeeee-eccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcc
Confidence 4444555555556778877764 357999999999999999999877543211 2246778999999999999999998
Q ss_pred hh
Q 039068 154 YS 155 (166)
Q Consensus 154 i~ 155 (166)
.-
T Consensus 196 fg 197 (401)
T KOG2838|consen 196 FG 197 (401)
T ss_pred cc
Confidence 63
No 13
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.10 E-value=3.4e-06 Score=76.87 Aligned_cols=83 Identities=22% Similarity=0.262 Sum_probs=71.3
Q ss_pred HHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEE--e--CCCCHHHHHHHHHhHcCCch
Q 039068 79 VWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIK--I--PGVPHEAVYAFVRFLYSSWY 154 (166)
Q Consensus 79 ~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~--I--~gV~~~~l~~lL~FlYTg~i 154 (166)
-++.|+++|.-+||.|.+ =|.+-..||.-| ..|+||++||.+.++|+....|. | +.|+.+++...+.=+|.+++
T Consensus 59 iyq~lf~q~enSDv~l~a-lg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEv 136 (488)
T KOG4682|consen 59 IYQNLFLQGENSDVILEA-LGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEV 136 (488)
T ss_pred HHHHHHhcCCCcceehhh-ccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhe
Confidence 478899999999999987 478999999999 68999999999999998776554 3 46999999999999999998
Q ss_pred h----------HHHHhhcc
Q 039068 155 S----------FVTKLLQL 163 (166)
Q Consensus 155 ~----------~a~~LL~l 163 (166)
+ -++++||+
T Consensus 137 eI~l~dv~gvlAaA~~lql 155 (488)
T KOG4682|consen 137 EIKLSDVVGVLAAACLLQL 155 (488)
T ss_pred eccHHHHHHHHHHHHHHHH
Confidence 7 45666665
No 14
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.85 E-value=1.7e-05 Score=69.84 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=53.4
Q ss_pred HHHHHHHhhCCCcc-EEEEcCCCe--------------eehhhHHHHhhcCHHHHHhhcCCCCC---------CccceEE
Q 039068 78 DVWDKLFKEGNGAD-VYAVTEDKS--------------CIPVHSSILSIASPVLGNILQQSKVN---------NDFIYIK 133 (166)
Q Consensus 78 ~~l~~Lr~e~~l~D-V~I~v~~G~--------------~i~AHr~VLAA~SpYFraMF~~~~~E---------~~~~~I~ 133 (166)
..+..|++.-..-| |.+.+.||+ +|.||++|.||||++||.++....++ +++++|.
T Consensus 224 ~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIi 303 (401)
T KOG2838|consen 224 EDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRII 303 (401)
T ss_pred HHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceee
Confidence 34556666555444 455555554 59999999999999999999764332 1234555
Q ss_pred eCC--CCHHHHHHHHHhHcCCchh
Q 039068 134 IPG--VPHEAVYAFVRFLYSSWYS 155 (166)
Q Consensus 134 I~g--V~~~~l~~lL~FlYTg~i~ 155 (166)
+.+ ++..---.|+.|+||++++
T Consensus 304 fdE~I~PkafA~i~lhclYTD~lD 327 (401)
T KOG2838|consen 304 FDELIFPKAFAPIFLHCLYTDRLD 327 (401)
T ss_pred chhhhcchhhhhhhhhhheecccc
Confidence 543 4444556789999999987
No 15
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=97.64 E-value=0.0002 Score=48.42 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=46.7
Q ss_pred EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHc
Q 039068 92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLY 150 (166)
Q Consensus 92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlY 150 (166)
|+|+..||+.|.+-+.++ -.|..++.|+.....+.. .|.+++|++++|+.+|+|++
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHH
Confidence 678888999999998886 599999999976433222 79999999999999999986
No 16
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.10 E-value=0.0011 Score=48.66 Aligned_cols=60 Identities=12% Similarity=0.222 Sum_probs=49.7
Q ss_pred cEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCC-ccceEEeCCCCHHHHHHHHHhHcC
Q 039068 91 DVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNN-DFIYIKIPGVPHEAVYAFVRFLYS 151 (166)
Q Consensus 91 DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~-~~~~I~I~gV~~~~l~~lL~FlYT 151 (166)
-|+|...||.+|.+.+.+. ..|..++.|+.....+. ....|.+++|++.+|+.+++|++-
T Consensus 3 ~v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~ 63 (104)
T smart00512 3 YIKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEH 63 (104)
T ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHH
Confidence 3788888999999999977 69999999997643322 225799999999999999999974
No 17
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=96.71 E-value=0.0041 Score=47.25 Aligned_cols=73 Identities=15% Similarity=0.225 Sum_probs=59.0
Q ss_pred EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCC--CCccceEEeCCCCHHHHHHHHHhH-----cCCch-h--------
Q 039068 92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQSKV--NNDFIYIKIPGVPHEAVYAFVRFL-----YSSWY-S-------- 155 (166)
Q Consensus 92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~--E~~~~~I~I~gV~~~~l~~lL~Fl-----YTg~i-~-------- 155 (166)
|+|+.+||.+|-.-|- +|.-|+-.|+||.+... |.+..+|.+.++++.+++.+.+|+ ||+.- +
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp 97 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP 97 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCH
Confidence 5777778888877554 57889999999997644 566778999999999999999997 77651 1
Q ss_pred -HHHHhhcccC
Q 039068 156 -FVTKLLQLKT 165 (166)
Q Consensus 156 -~a~~LL~lah 165 (166)
++++||.+|.
T Consensus 98 emaleLL~aAn 108 (112)
T KOG3473|consen 98 EMALELLMAAN 108 (112)
T ss_pred HHHHHHHHHhh
Confidence 8999998764
No 18
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=96.57 E-value=0.00067 Score=60.08 Aligned_cols=74 Identities=46% Similarity=0.582 Sum_probs=61.6
Q ss_pred cEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCchh------HHHHhhccc
Q 039068 91 DVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS------FVTKLLQLK 164 (166)
Q Consensus 91 DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~------~a~~LL~la 164 (166)
|+.+..+++..|++|+.+|+..||.|..+.......+..+.+.+.+++..++..+++|+|.+ ++ +..|||.+.
T Consensus 27 ~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~ 105 (319)
T KOG1778|consen 27 DVEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALS 105 (319)
T ss_pred chhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhh
Confidence 55555556678999999999999999988776644456678999999999999999999999 65 788888875
Q ss_pred C
Q 039068 165 T 165 (166)
Q Consensus 165 h 165 (166)
|
T Consensus 106 ~ 106 (319)
T KOG1778|consen 106 H 106 (319)
T ss_pred h
Confidence 4
No 19
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.51 E-value=0.0017 Score=59.42 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=44.6
Q ss_pred eeehhhHHHHhhcCHHHHHhhcCCCCCCc-cc---eEEeCCCCHHHHHHHHHhHcCCchh
Q 039068 100 SCIPVHSSILSIASPVLGNILQQSKVNND-FI---YIKIPGVPHEAVYAFVRFLYSSWYS 155 (166)
Q Consensus 100 ~~i~AHr~VLAA~SpYFraMF~~~~~E~~-~~---~I~I~gV~~~~l~~lL~FlYTg~i~ 155 (166)
.+.|||++++. |..||+.||.+...|+. .. ...++.....+++.+++|+|+.+-+
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~td 359 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTD 359 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhccccc
Confidence 46999999995 55699999999987732 22 3456777889999999999999876
No 20
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.08 E-value=0.00078 Score=56.75 Aligned_cols=65 Identities=12% Similarity=0.071 Sum_probs=52.4
Q ss_pred CccEEEEcC-CCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCc
Q 039068 89 GADVYAVTE-DKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSW 153 (166)
Q Consensus 89 l~DV~I~v~-~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~ 153 (166)
+-|+.+..+ +|..|.+|+.+++|+|++|++|+..+..+.....+.+.+++++.++++..|.|+..
T Consensus 98 ~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s 163 (297)
T KOG1987|consen 98 MLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPS 163 (297)
T ss_pred ccChHHhhcccCcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEecc
Confidence 355543322 24569999999999999999999988766666667999999999999999999953
No 21
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=95.37 E-value=0.017 Score=41.00 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=47.9
Q ss_pred EEEEcCCCeeehhhHHHHh-hcCHHHHHhhcCC---CCCCccceEEeCCCCHHHHHHHHHhHcC-Cchh
Q 039068 92 VYAVTEDKSCIPVHSSILS-IASPVLGNILQQS---KVNNDFIYIKIPGVPHEAVYAFVRFLYS-SWYS 155 (166)
Q Consensus 92 V~I~v~~G~~i~AHr~VLA-A~SpYFraMF~~~---~~E~~~~~I~I~gV~~~~l~~lL~FlYT-g~i~ 155 (166)
|+|.| ||+.|.+=+..|. ....+|..||... ........+-| |-+++.++.||+|+-+ +.+.
T Consensus 1 V~lNV-GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~ 67 (94)
T PF02214_consen 1 VRLNV-GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLP 67 (94)
T ss_dssp EEEEE-TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB-
T ss_pred CEEEE-CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccC
Confidence 68899 6899999999998 6677999999864 22234455655 7899999999999999 5654
No 22
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=93.14 E-value=0.03 Score=51.57 Aligned_cols=62 Identities=16% Similarity=0.028 Sum_probs=47.3
Q ss_pred CccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCC
Q 039068 89 GADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSS 152 (166)
Q Consensus 89 l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg 152 (166)
..|+++....|+.|-|||..|+|||.||..-+-..+ ...+.|.=..|=++++..|+.|+|-.
T Consensus 149 ~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~v~~~~f~~flk~lyl~ 210 (516)
T KOG0511|consen 149 CHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHRVILSAFSPFLKQLYLN 210 (516)
T ss_pred ccchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhhhhHhhhhHHHHHHHHh
Confidence 357777777899999999999999999875443322 13345666778899999999999976
No 23
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.15 E-value=1 Score=36.50 Aligned_cols=61 Identities=10% Similarity=0.127 Sum_probs=48.0
Q ss_pred EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCc
Q 039068 92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSW 153 (166)
Q Consensus 92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~ 153 (166)
+.|...||+.|.+-+.++ -.|..+++++...........|.|+.|.+.+|..+|+|+|--+
T Consensus 7 ikL~SsDG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk 67 (162)
T KOG1724|consen 7 IKLESSDGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHK 67 (162)
T ss_pred EEEEccCCceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcc
Confidence 456667899999987765 7888999998765332222679999999999999999998743
No 24
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=89.14 E-value=0.87 Score=38.90 Aligned_cols=62 Identities=13% Similarity=0.054 Sum_probs=50.9
Q ss_pred EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCC-CCcc-ceEEeCCCCHHHHHHHHHhHcCCchh
Q 039068 92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQSKV-NNDF-IYIKIPGVPHEAVYAFVRFLYSSWYS 155 (166)
Q Consensus 92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~-E~~~-~~I~I~gV~~~~l~~lL~FlYTg~i~ 155 (166)
|.|.| ||..|...+.=|---.-||++||..++. +... ..|-| |-+|.=+..||+|+=.|.+.
T Consensus 7 vkLnv-GG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~ 70 (230)
T KOG2716|consen 7 VKLNV-GGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVD 70 (230)
T ss_pred EEEec-CCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhccccc
Confidence 45788 6899999999999999999999998863 3333 34554 88999999999999988765
No 25
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=87.02 E-value=1.3 Score=41.17 Aligned_cols=63 Identities=8% Similarity=-0.016 Sum_probs=49.3
Q ss_pred EEEEcCCCeeehhhHHHHhhcC--HHHHHhhcCCCCC-CccceEEeCCCCHHHHHHHHHhHcCCchh
Q 039068 92 VYAVTEDKSCIPVHSSILSIAS--PVLGNILQQSKVN-NDFIYIKIPGVPHEAVYAFVRFLYSSWYS 155 (166)
Q Consensus 92 V~I~v~~G~~i~AHr~VLAA~S--pYFraMF~~~~~E-~~~~~I~I~gV~~~~l~~lL~FlYTg~i~ 155 (166)
|.|.| +|+.|..-+.-|+-.- .+|.++|+..+.. +.....-.-|-+|+.|..||+||=||++.
T Consensus 13 V~lNV-GGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~ 78 (465)
T KOG2714|consen 13 VKLNV-GGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLD 78 (465)
T ss_pred EEEec-CceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCC
Confidence 46888 6899999999887655 6999999876542 22333344589999999999999999987
No 26
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=59.59 E-value=12 Score=27.94 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhh
Q 039068 74 KETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSI 111 (166)
Q Consensus 74 ~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA 111 (166)
.+..+.+++|......- |+|.+.....-.|||.||+.
T Consensus 84 ~~~~~~l~~L~~~~~~~-v~LlC~e~dp~~CHR~iLa~ 120 (122)
T PF04343_consen 84 PEFQEGLERLAELAREG-VALLCAEKDPERCHRRILAE 120 (122)
T ss_pred HhHHHHHHHHHHHHcCC-eEEEEEecChhcCcHHHHHH
Confidence 34455666666654444 88876555678899999984
No 27
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=46.11 E-value=34 Score=27.54 Aligned_cols=57 Identities=19% Similarity=0.178 Sum_probs=43.4
Q ss_pred cEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHc
Q 039068 91 DVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLY 150 (166)
Q Consensus 91 DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlY 150 (166)
-+.|...||+.|..-+.| |-+|=..++|+.....-+- .|..+.|.+.++..+++|+=
T Consensus 3 ~i~l~s~dge~F~vd~~i-AerSiLikN~l~d~~~~n~--p~p~pnVrSsvl~kv~ew~e 59 (158)
T COG5201 3 MIELESIDGEIFRVDENI-AERSILIKNMLCDSTACNY--PIPAPNVRSSVLMKVQEWME 59 (158)
T ss_pred ceEEEecCCcEEEehHHH-HHHHHHHHHHhccccccCC--CCcccchhHHHHHHHHHHHH
Confidence 466777788888887765 6788889999876433222 26678999999999999984
No 28
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=44.57 E-value=31 Score=30.23 Aligned_cols=63 Identities=11% Similarity=0.048 Sum_probs=41.9
Q ss_pred EEEEcCCCeeehhhHHHHhhcCH--HHHHhhcCC--CCCCccceEEeCCCCHHHHHHHHHhHcCCchh
Q 039068 92 VYAVTEDKSCIPVHSSILSIASP--VLGNILQQS--KVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS 155 (166)
Q Consensus 92 V~I~v~~G~~i~AHr~VLAA~Sp--YFraMF~~~--~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~ 155 (166)
|.+.+ +|+.|-.-+--|-.+=| .+.+||.+. +.+.+.+...+-|-++.-|+.||+|+--|++.
T Consensus 11 vrlni-gGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~ 77 (302)
T KOG1665|consen 11 VRLNI-GGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIP 77 (302)
T ss_pred heeec-CCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCcee
Confidence 44555 35555544444444443 467899764 33444455666689999999999999999886
No 29
>PRK13782 phosphocarrier protein Chr; Provisional
Probab=38.43 E-value=1.4e+02 Score=20.86 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=36.4
Q ss_pred CCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCC-HHHHHHHHHhH
Q 039068 87 GNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVP-HEAVYAFVRFL 149 (166)
Q Consensus 87 ~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~-~~~l~~lL~Fl 149 (166)
++.|||.|.. +|+.+.| |.||+ ++.-+.+.+..=+|...|-+ .++++.|.+|+
T Consensus 28 ~f~~~i~l~~-~~~~vda-KSil~--------llsLg~~~g~~v~v~~~G~de~~a~~~l~~~~ 81 (82)
T PRK13782 28 RFHADIFIEK-DGKKVNA-KSIMG--------LMSLAIGTGSMITIITEGSDEEEALEALAAYV 81 (82)
T ss_pred hCCCEEEEEE-CCeEEec-HhHHH--------HHhcCCCCCCEEEEEEeCcCHHHHHHHHHHHh
Confidence 5679999986 6788888 56664 44444444455567777887 47778888776
No 30
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=36.06 E-value=3.8 Score=39.54 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=30.6
Q ss_pred HHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhc
Q 039068 79 VWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQ 121 (166)
Q Consensus 79 ~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~ 121 (166)
.+++-|+...+|||++.+. ++.|.+|| +|.||..-.-
T Consensus 4 ~~~~qr~~~~~~~~~~~~~-~~~f~~~~-----~~e~~~~~~~ 40 (604)
T KOG3863|consen 4 SLNDQRKKDVLCDVTAFVE-RQGFRAHR-----CSEYFTSRIV 40 (604)
T ss_pred cccccccccccchhHHHHh-ccccccee-----ccchhhhhhc
Confidence 4567788889999999985 68899999 9999986543
No 31
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=34.93 E-value=90 Score=23.12 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=37.9
Q ss_pred EEEEcCC-CeeehhhHHHHhhcCHHHHHhhcCCCCCCc---cceEEeCCCCHHHHHHHHHhH
Q 039068 92 VYAVTED-KSCIPVHSSILSIASPVLGNILQQSKVNND---FIYIKIPGVPHEAVYAFVRFL 149 (166)
Q Consensus 92 V~I~v~~-G~~i~AHr~VLAA~SpYFraMF~~~~~E~~---~~~I~I~gV~~~~l~~lL~Fl 149 (166)
+.+.|++ .+.|-.+...| ..|.|++++.....|-+ ...|.|+ .+.+.|+.+|..|
T Consensus 41 ~~VyVG~~~~Rfvvp~~~L--~hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 41 FAVYVGEERRRFVVPVSYL--NHPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred EEEEeCccceEEEechHHc--CchhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 3556654 56677776666 68999999987654422 3456665 7888888888764
No 32
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=24.55 E-value=2.2e+02 Score=26.20 Aligned_cols=79 Identities=15% Similarity=0.224 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCH-HHHHhhcCCCC---CCccceEEe-CCCCHHHHHHHHHh
Q 039068 74 KETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASP-VLGNILQQSKV---NNDFIYIKI-PGVPHEAVYAFVRF 148 (166)
Q Consensus 74 ~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~Sp-YFraMF~~~~~---E~~~~~I~I-~gV~~~~l~~lL~F 148 (166)
..+...+. +..|..--+++.+ ++..|-.-+.+|-+.-. -.-.||..+.. -+...+.++ .|+++.+|++||+|
T Consensus 82 ~~~~s~~G--~~pg~~~~~t~lv-d~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdY 158 (438)
T KOG3840|consen 82 EMLMSQLG--CSPGEGDKVCLLV-DQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDY 158 (438)
T ss_pred hhhhhhcC--CCCCCCcceEEEe-eeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHH
Confidence 34444454 4455555667777 56778888888854332 23467765421 223334554 58999999999999
Q ss_pred HcCCchh
Q 039068 149 LYSSWYS 155 (166)
Q Consensus 149 lYTg~i~ 155 (166)
--||.+.
T Consensus 159 YksG~iR 165 (438)
T KOG3840|consen 159 YQSGTMR 165 (438)
T ss_pred HhcCcee
Confidence 9999764
No 33
>PF00978 RdRP_2: RNA dependent RNA polymerase; InterPro: IPR001788 This entry represents RNA dependent RNA polymerases found in several types of viruses [], especially those with a tripartite genome (RNA1, RNA2 and RNA3) and an encapsidated subgenomic RNA (RNA4) from which the coat protein is expressed, such as Cucumber mosaic virus (strain NT9) (CMV). This entry contains the following proteins: Viral RNA-directed RNA polymerase 2A (protein 2A) []. Putative RNA dependent RNA polymerase from Tobacco mosaic virus []. Non structural polyprotein from Togavirus []. ; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=24.09 E-value=69 Score=29.34 Aligned_cols=53 Identities=19% Similarity=0.175 Sum_probs=37.9
Q ss_pred Ceeehhh-HHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcC
Q 039068 99 KSCIPVH-SSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYS 151 (166)
Q Consensus 99 G~~i~AH-r~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYT 151 (166)
|+.|-+| +.|++.-||+|+.+...-..--..+.+--.|..++.+...+.....
T Consensus 156 gQtI~~~~k~v~~~fsp~fr~i~~rl~~~L~~~i~i~~g~~~~~l~~~v~~~~~ 209 (440)
T PF00978_consen 156 GQTIVYHSKSVNALFSPIFRYIEKRLLSCLPPNIVIYSGMTPDDLSAWVRSHNN 209 (440)
T ss_pred ceeeeeeccchHhhhhHHHHHHHHHHHhhCCCcEEEcCCCCHHHHHHHHHhCCC
Confidence 5777766 7899999999998876522111223444458999999999887775
No 34
>PRK10897 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Provisional
Probab=23.72 E-value=2.8e+02 Score=19.90 Aligned_cols=56 Identities=20% Similarity=0.297 Sum_probs=37.4
Q ss_pred CCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCH-HHHHHHHHhHcC
Q 039068 87 GNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPH-EAVYAFVRFLYS 151 (166)
Q Consensus 87 ~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~-~~l~~lL~FlYT 151 (166)
++.|||+|..++|+...+ |.||+ ++.-+-+.+..=+|.+.|-+. ++++.|.+|+-.
T Consensus 29 ~f~s~v~l~~~~g~~~~a-kSil~--------lm~Lg~~~G~~i~v~~~G~De~~A~~~l~~~~~~ 85 (90)
T PRK10897 29 GFDAEVLLRNDEGTEAEA-NSVIA--------LLMLDSAKGRQIEVEATGPQEEEALAAVIALFNS 85 (90)
T ss_pred hCCCEEEEEeCCCcEEch-HhHHH--------HHHhCCCCCCEEEEEEECcCHHHHHHHHHHHHHh
Confidence 456999998754778888 45553 333333444555677888887 778888888754
No 35
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=22.45 E-value=73 Score=28.63 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=41.8
Q ss_pred CeeehhhHHHHhhcCHHHHHhhcCCCC-CCccceEEeC-CCCHHHHHHHHHhHcCCc
Q 039068 99 KSCIPVHSSILSIASPVLGNILQQSKV-NNDFIYIKIP-GVPHEAVYAFVRFLYSSW 153 (166)
Q Consensus 99 G~~i~AHr~VLAA~SpYFraMF~~~~~-E~~~~~I~I~-gV~~~~l~~lL~FlYTg~ 153 (166)
.+.|.|.+-.|-.-=.||+..+..... ......|+|. --+-.+|+=|++|+....
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~ 69 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEP 69 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCC
Confidence 367999999999999999999965211 1233446654 467789999999999854
No 36
>cd00367 PTS-HPr_like Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation across the cell membrane. The phosphoryl group from phosphoenolpyruvate is transferred to HPr by enzyme I (EI). Phospho-HPr then transfers the phosphoryl group to one of several sugar-specific phosphoprotein intermediates. The conserved histidine in the N-terminus of HPr serves as an acceptor for the phosphoryl group of EI. In addition to the phosphotransferase proteins HPr and E1, this family also includes the closely related Carbon Catabolite Repressor (CCR) proteins which use the same phosphorylation mechanism and interact with transcriptional regulators to control expression of genes coding for utilization of less favored carbon sources.
Probab=21.78 E-value=2.6e+02 Score=18.84 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=33.9
Q ss_pred CCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCH-HHHHHHHHhH
Q 039068 87 GNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPH-EAVYAFVRFL 149 (166)
Q Consensus 87 ~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~-~~l~~lL~Fl 149 (166)
+..|||+|.. +|+.+.| |.+|+ ++.-+.+.+..=+|...|-+. ++++.|.+|+
T Consensus 24 ~~~~~v~i~~-~~~~vda-kSil~--------i~~L~~~~G~~i~i~~~G~de~~al~~l~~~~ 77 (77)
T cd00367 24 KFKSDITLRK-GGRKANA-KSILG--------LMSLGAKQGDEITLSAEGEDAEEALEALAELL 77 (77)
T ss_pred hCCCEEEEEE-CCEEEcH-HhHHH--------HHHcCCCCCCEEEEEEECcCHHHHHHHHHHhC
Confidence 4679999987 4777888 55653 333344444455677778764 5667776653
Done!