Query 039068
Match_columns 166
No_of_seqs 154 out of 1059
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 09:42:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2if5_A Zinc finger and BTB dom 99.9 1.8E-26 6E-31 169.1 7.6 96 69-165 5-104 (120)
2 3ohu_A Transcription regulator 99.9 4.5E-26 1.5E-30 168.2 8.3 95 68-165 11-110 (125)
3 1r29_A B-cell lymphoma 6 prote 99.9 8.2E-26 2.8E-30 167.3 8.5 98 66-165 6-108 (127)
4 2ppi_A Gigaxonin; BTB domain, 99.9 2E-25 6.8E-30 170.4 7.4 99 66-165 24-128 (144)
5 3b84_A Zinc finger and BTB dom 99.9 8.7E-26 3E-30 166.4 5.2 92 69-165 4-99 (119)
6 2z8h_A Transcription regulator 99.9 9.2E-25 3.1E-29 164.6 9.7 96 67-165 14-114 (138)
7 2ihc_A Transcription regulator 99.9 3.6E-25 1.2E-29 164.1 7.3 95 68-165 8-107 (124)
8 1buo_A POZ domain, protein (pr 99.9 6.2E-25 2.1E-29 161.9 7.9 92 68-165 7-102 (121)
9 2yy9_A Zinc finger and BTB dom 99.9 2.8E-25 9.6E-30 167.4 6.0 93 68-165 4-100 (135)
10 2vpk_A Myoneurin; transcriptio 99.9 7.3E-25 2.5E-29 159.9 7.1 90 71-165 4-99 (116)
11 3fkc_A Transcriptional regulat 99.9 2.7E-24 9.3E-29 158.5 8.7 91 69-165 11-106 (116)
12 3ga1_A Nucleus accumbens-assoc 99.9 1.8E-24 6.3E-29 160.9 6.7 93 68-165 12-109 (129)
13 4eoz_A Speckle-type POZ protei 99.9 3E-24 1E-28 160.1 6.8 90 75-165 11-104 (145)
14 2vkp_A BTB/POZ domain-containi 99.9 1.2E-24 4.2E-29 156.2 4.2 82 83-165 2-90 (109)
15 2q81_A MIZ-1 protein; BTB/POZ 99.9 1.4E-24 4.9E-29 159.8 3.7 90 70-165 8-101 (119)
16 3i3n_A Kelch-like protein 11; 99.9 4.6E-24 1.6E-28 176.3 5.1 98 68-165 11-120 (279)
17 3htm_A Speckle-type POZ protei 99.9 1.6E-23 5.3E-28 160.2 6.7 90 75-165 20-113 (172)
18 3hve_A Gigaxonin; ubiquitin, c 99.9 1.2E-23 4.2E-28 171.5 5.7 97 68-165 10-112 (256)
19 3m5b_A Zinc finger and BTB dom 99.9 4.4E-23 1.5E-27 153.6 4.5 82 72-165 15-100 (119)
20 3hqi_A Speckle-type POZ protei 99.9 4.4E-22 1.5E-26 166.3 10.2 90 75-165 160-253 (312)
21 4ajy_C Transcription elongatio 99.4 8.4E-14 2.9E-18 100.5 5.8 73 92-165 4-93 (97)
22 2ast_A S-phase kinase-associat 99.3 1.2E-12 4E-17 101.9 5.8 61 92-153 3-65 (159)
23 1fs1_B SKP1, cyclin A/CDK2-ass 98.7 4.9E-09 1.7E-13 80.2 3.7 57 92-153 4-60 (141)
24 1hv2_A Elongin C, ELC1; protei 98.6 6.2E-08 2.1E-12 70.3 6.8 61 91-153 5-65 (99)
25 2fnj_C Transcription elongatio 98.6 7.7E-08 2.6E-12 69.4 5.7 61 92-153 3-65 (96)
26 2p1m_A SKP1-like protein 1A; F 98.5 2.1E-08 7.3E-13 78.1 0.4 58 92-153 6-63 (160)
27 1vcb_B Protein (elongin C); tu 97.9 1.3E-05 4.6E-10 59.4 5.5 62 91-153 18-81 (112)
28 3v7d_A Suppressor of kinetocho 97.7 3.8E-05 1.3E-09 60.4 5.7 63 90-153 7-73 (169)
29 3drz_A BTB/POZ domain-containi 97.0 0.0011 3.8E-08 48.0 5.3 62 92-155 8-74 (107)
30 3kvt_A Potassium channel prote 89.7 0.095 3.2E-06 38.6 0.9 62 92-155 7-70 (115)
31 3drx_A BTB/POZ domain-containi 88.5 0.19 6.4E-06 40.9 2.0 67 87-155 8-80 (202)
32 1t1d_A Protein (potassium chan 79.1 0.5 1.7E-05 33.9 0.6 62 92-155 3-67 (100)
33 1s1g_A Potassium voltage-gated 76.5 1.3 4.5E-05 32.8 2.2 59 92-155 15-77 (124)
34 2nz0_B Potassium voltage-gated 75.2 1.7 5.9E-05 32.9 2.7 59 92-155 37-99 (140)
35 1nn7_A Potassium channel KV4.2 72.2 1.1 3.8E-05 32.1 0.8 59 92-155 2-64 (105)
36 2v8f_C MDIA1, profilin IIA; al 60.6 3.8 0.00013 22.9 1.3 9 47-55 2-10 (26)
37 2r9r_B Paddle chimera voltage 40.8 14 0.00046 33.1 2.4 62 92-155 54-118 (514)
38 3ccd_A Phosphocarrier protein 26.9 1.3E+02 0.0044 20.2 5.1 55 86-150 27-82 (85)
39 1kkl_H Phosphocarrier protein 26.4 1.2E+02 0.0042 21.2 5.1 56 86-151 39-95 (100)
40 1y51_A Phosphocarrier protein 25.7 1.3E+02 0.0046 20.2 5.1 55 86-150 27-82 (88)
41 1sph_A Histidine-containing ph 22.0 1.4E+02 0.0049 20.0 4.6 55 86-150 27-82 (88)
42 1pch_A Phosphocarrier protein; 21.4 1.3E+02 0.0045 20.4 4.3 57 86-152 26-83 (88)
43 1ptf_A Histidine-containing ph 21.3 1.6E+02 0.0053 19.9 4.7 55 86-150 27-82 (88)
44 1taf_A TFIID TBP associated fa 20.1 44 0.0015 22.3 1.5 18 134-151 16-33 (68)
No 1
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.93 E-value=1.8e-26 Score=169.06 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=85.0
Q ss_pred CCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHh
Q 039068 69 CSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRF 148 (166)
Q Consensus 69 ~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~F 148 (166)
++.|+..+++.|++||+++.+|||+|.+ +|++|+|||+|||++||||++||.+++.|+....|.|+++++++++.+|+|
T Consensus 5 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~ 83 (120)
T 2if5_A 5 FPDHSSDILSGLNEQRTQGLLCDVVILV-EGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDF 83 (120)
T ss_dssp CTTHHHHHHHHHHHHHHTTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcCCCCCeEEEE-CCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHH
Confidence 4678999999999999999999999999 578999999999999999999999999988889999999999999999999
Q ss_pred HcCCchh----HHHHhhcccC
Q 039068 149 LYSSWYS----FVTKLLQLKT 165 (166)
Q Consensus 149 lYTg~i~----~a~~LL~lah 165 (166)
+|||++. ++..||.+|+
T Consensus 84 ~Yt~~~~~~~~~~~~ll~~A~ 104 (120)
T 2if5_A 84 AYTATLTVSTANVGDILSAAR 104 (120)
T ss_dssp HHHSCCCCCGGGHHHHHHHHH
T ss_pred HcCCCCccCHHHHHHHHHHHH
Confidence 9999986 7888887764
No 2
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.93 E-value=4.5e-26 Score=168.24 Aligned_cols=95 Identities=13% Similarity=0.149 Sum_probs=86.0
Q ss_pred CCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCC-CCHHHHHHHH
Q 039068 68 HCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPG-VPHEAVYAFV 146 (166)
Q Consensus 68 ~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~g-V~~~~l~~lL 146 (166)
....|+..+++.|++||+++.+|||+|.+ +|+.|+|||+|||++|+||++||.+.+.| ...|.+++ +++++++.+|
T Consensus 11 ~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~~f~~~l 87 (125)
T 3ohu_A 11 ESTVHCTNILLGLNDQRKKDILCDVTLIV-ERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTARGFGPLL 87 (125)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCSCCEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHhcCCccceEEEE-CCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHHHHHHHH
Confidence 45678999999999999999999999999 57999999999999999999999998865 56799998 9999999999
Q ss_pred HhHcCCchh----HHHHhhcccC
Q 039068 147 RFLYSSWYS----FVTKLLQLKT 165 (166)
Q Consensus 147 ~FlYTg~i~----~a~~LL~lah 165 (166)
+|+|||++. ++..||.+|+
T Consensus 88 ~~iYtg~~~~~~~~v~~ll~~A~ 110 (125)
T 3ohu_A 88 QFAYTAKLLLSRENIREVIRCAE 110 (125)
T ss_dssp HHHTTSEEEECTTTHHHHHHHHH
T ss_pred HhHcCCceEECHHHHHHHHHHHH
Confidence 999999986 7777777664
No 3
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.92 E-value=8.2e-26 Score=167.25 Aligned_cols=98 Identities=14% Similarity=0.217 Sum_probs=89.8
Q ss_pred CCCCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEe-CCCCHHHHHH
Q 039068 66 FLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKI-PGVPHEAVYA 144 (166)
Q Consensus 66 ~~~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I-~gV~~~~l~~ 144 (166)
......|+..+++.|++||+++.+|||+|.+ +|++|+|||+|||++||||++||.+++.| ....|.| +++++++++.
T Consensus 6 ~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~~ 83 (127)
T 1r29_A 6 QIQFTRHASDVLLNLNRLRSRDILTDVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFNI 83 (127)
T ss_dssp CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCCCCCEEEEE-CCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHHH
Confidence 3456789999999999999999999999999 57899999999999999999999999988 7788999 9999999999
Q ss_pred HHHhHcCCchh----HHHHhhcccC
Q 039068 145 FVRFLYSSWYS----FVTKLLQLKT 165 (166)
Q Consensus 145 lL~FlYTg~i~----~a~~LL~lah 165 (166)
+|+|+|||++. ++..||.+|+
T Consensus 84 ll~~~Ytg~~~~~~~~~~~ll~~A~ 108 (127)
T 1r29_A 84 LLDFMYTSRLNLREGNIMAVMATAM 108 (127)
T ss_dssp HHHHHHHSCCCCCTTTHHHHHHHHH
T ss_pred HHHHHcCCCcCcCHHHHHHHHHHHH
Confidence 99999999986 7888887764
No 4
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.92 E-value=2e-25 Score=170.38 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=85.8
Q ss_pred CCCCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCC--CccceEEeCCCCHHHHH
Q 039068 66 FLHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVN--NDFIYIKIPGVPHEAVY 143 (166)
Q Consensus 66 ~~~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E--~~~~~I~I~gV~~~~l~ 143 (166)
......++..+++.|++||+++.+|||+|.+ +|+.|+|||+||||+||||++||.+++.+ +....|.|+++++++++
T Consensus 24 ~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~ 102 (144)
T 2ppi_A 24 AVSDPQHAARLLRALSSFREESRFCDAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMR 102 (144)
T ss_dssp CCCCTTHHHHHHHHHHHTTC--CCCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHH
T ss_pred eecCcchHHHHHHHHHHHHhcCCCcceEEEE-CCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHH
Confidence 3457789999999999999999999999999 57899999999999999999999988765 56778999999999999
Q ss_pred HHHHhHcCCchh----HHHHhhcccC
Q 039068 144 AFVRFLYSSWYS----FVTKLLQLKT 165 (166)
Q Consensus 144 ~lL~FlYTg~i~----~a~~LL~lah 165 (166)
.+|+|+|||++. ++..||.+|+
T Consensus 103 ~lL~fiYtg~~~i~~~~v~~ll~~A~ 128 (144)
T 2ppi_A 103 EILDYIFSGQIRLNEDTIQDVVQAAD 128 (144)
T ss_dssp HHHHHHTTSCCCCCTTTHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 999999999986 7888888764
No 5
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.92 E-value=8.7e-26 Score=166.36 Aligned_cols=92 Identities=13% Similarity=0.084 Sum_probs=83.7
Q ss_pred CCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHh
Q 039068 69 CSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRF 148 (166)
Q Consensus 69 ~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~F 148 (166)
+..|+..+++.|++||+++.+|||+|.+ +|++|+|||+|||++||||++||.+++ ...|.|+|+++++++.+|+|
T Consensus 4 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~~~~f~~ll~~ 78 (119)
T 3b84_A 4 FVQHSVRVLQELNKQREKGQYCDATLDV-GGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPAGFAEIFGLLLDF 78 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcCCCcceEEEE-CCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCCCCHHHHHHHHHH
Confidence 3468889999999999999999999999 578999999999999999999999865 46799999999999999999
Q ss_pred HcCCchh----HHHHhhcccC
Q 039068 149 LYSSWYS----FVTKLLQLKT 165 (166)
Q Consensus 149 lYTg~i~----~a~~LL~lah 165 (166)
+|||+++ ++..||.+|+
T Consensus 79 iYtg~~~~~~~~v~~ll~~A~ 99 (119)
T 3b84_A 79 FYTGHLALTSGNRDQVLLAAR 99 (119)
T ss_dssp HHHSCCCCCTTTHHHHHHHHH
T ss_pred HcCCCCccCHHHHHHHHHHHH
Confidence 9999986 7888888764
No 6
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.91 E-value=9.2e-25 Score=164.56 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=86.3
Q ss_pred CCCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeC-CCCHHHHHHH
Q 039068 67 LHCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIP-GVPHEAVYAF 145 (166)
Q Consensus 67 ~~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~-gV~~~~l~~l 145 (166)
..+..|+..+++.|++||+++.+|||+|.+ +|++|+|||+||||+||||++||.+.+.| ...|.++ ++++++++.+
T Consensus 14 ~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~v~~~~~~~l 90 (138)
T 2z8h_A 14 YESSVHSTNVLLSLNDQRKKDVLCDVTVLV-EGQRFRAHRSVLAACSSYFHSRIVGQTDA--ELTVTLPEEVTVKGFEPL 90 (138)
T ss_dssp CCCSSHHHHHHHHHHHHHHHTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCCCT--TEEEECCTTSCHHHHHHH
T ss_pred ecCCchHHHHHHHHHHHHhhCCCcCeEEEE-CCEEEechHHHHHHcCHHHHHHHhcCCCC--CceEEeCCCCCHHHHHHH
Confidence 456789999999999999999999999999 57899999999999999999999998865 3578995 9999999999
Q ss_pred HHhHcCCchh----HHHHhhcccC
Q 039068 146 VRFLYSSWYS----FVTKLLQLKT 165 (166)
Q Consensus 146 L~FlYTg~i~----~a~~LL~lah 165 (166)
|+|+|||++. ++..||.+|+
T Consensus 91 L~~~Ytg~~~i~~~~v~~ll~~A~ 114 (138)
T 2z8h_A 91 IQFAYTAKLILSKDNVDEVCRCVE 114 (138)
T ss_dssp HHHHHHSCCCCCTTTHHHHHHHHH
T ss_pred HHHhcCCCcccCHHHHHHHHHHHH
Confidence 9999999986 7888887764
No 7
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.91 E-value=3.6e-25 Score=164.07 Aligned_cols=95 Identities=14% Similarity=0.130 Sum_probs=83.6
Q ss_pred CCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEe-CCCCHHHHHHHH
Q 039068 68 HCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKI-PGVPHEAVYAFV 146 (166)
Q Consensus 68 ~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I-~gV~~~~l~~lL 146 (166)
.+..|+..+++.|++||+++.+|||+|.+ +|++|+|||+||||+||||++||.+++.|. ..|.+ .++++++++.+|
T Consensus 8 ~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~~v~~~~f~~lL 84 (124)
T 2ihc_A 8 ESSVHSTNVLLSLNDQRKKDVLCDVTIFV-EGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPEEVTVKGFEPLI 84 (124)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCSCCEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCTTSCHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHhcCCCcCEEEEE-CCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecCCcCHHHHHHHH
Confidence 45678999999999999999999999999 578999999999999999999999988653 57899 599999999999
Q ss_pred HhHcCCchh----HHHHhhcccC
Q 039068 147 RFLYSSWYS----FVTKLLQLKT 165 (166)
Q Consensus 147 ~FlYTg~i~----~a~~LL~lah 165 (166)
+|+|||++. ++..||.+|+
T Consensus 85 ~~iYtg~~~i~~~~v~~ll~~A~ 107 (124)
T 2ihc_A 85 QFAYTAKLILSKENVDEVCKCVE 107 (124)
T ss_dssp HHHHHSEEEEETTTHHHHHHHHH
T ss_pred HHhcCCCcccCHHHHHHHHHHHH
Confidence 999999986 7888887764
No 8
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.91 E-value=6.2e-25 Score=161.91 Aligned_cols=92 Identities=12% Similarity=0.134 Sum_probs=83.6
Q ss_pred CCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHH
Q 039068 68 HCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVR 147 (166)
Q Consensus 68 ~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~ 147 (166)
..+.|+..+++.|++||+++.+|||+|.+ +|++|+|||+|||++||||++||.++ ...|.|+++++++++.+|+
T Consensus 7 ~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~ 80 (121)
T 1buo_A 7 QNPSHPTGLLCKANQMRLAGTLCDVVIMV-DSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILE 80 (121)
T ss_dssp CCTTHHHHHHHHHHHHHHHTTTCCEEEEE-SSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHhcCCCCCEEEEE-CCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCCCCHHHHHHHHH
Confidence 45678999999999999999999999999 57899999999999999999999863 4579999999999999999
Q ss_pred hHcCCchh----HHHHhhcccC
Q 039068 148 FLYSSWYS----FVTKLLQLKT 165 (166)
Q Consensus 148 FlYTg~i~----~a~~LL~lah 165 (166)
|+|||++. ++..+|.+|+
T Consensus 81 ~~Ytg~~~~~~~~~~~ll~~A~ 102 (121)
T 1buo_A 81 YAYTATLQAKAEDLDDLLYAAE 102 (121)
T ss_dssp HHHHSCCCCCGGGHHHHHHHHH
T ss_pred hhcCCCcCCCHHHHHHHHHHHH
Confidence 99999986 7888887764
No 9
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.91 E-value=2.8e-25 Score=167.40 Aligned_cols=93 Identities=15% Similarity=0.086 Sum_probs=80.5
Q ss_pred CCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHH
Q 039068 68 HCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVR 147 (166)
Q Consensus 68 ~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~ 147 (166)
.+..|+..+++.|++||+++.+|||+|.+ +|++|+|||+|||++|+||++||..++ ...|.|+++++++|+.+|+
T Consensus 4 ~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~~~~f~~lL~ 78 (135)
T 2yy9_A 4 GSSGHSVRVLQELNKQREKGQYCDATLDV-GGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGFAEIFGLLLD 78 (135)
T ss_dssp ---CHHHHHHHHHHHHHHTTTTCCEEEEE-TTEEEEECHHHHHHHCHHHHHTCC--------CCEEECGGGHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhcCCCcceEEEE-CCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCCHHHHHHHHH
Confidence 45678999999999999999999999999 579999999999999999999999866 4579999999999999999
Q ss_pred hHcCCchh----HHHHhhcccC
Q 039068 148 FLYSSWYS----FVTKLLQLKT 165 (166)
Q Consensus 148 FlYTg~i~----~a~~LL~lah 165 (166)
|+|||++. ++..||.+|+
T Consensus 79 fiYtg~~~i~~~~v~~ll~~A~ 100 (135)
T 2yy9_A 79 FFYTGHLALTSGNRDQVLLAAK 100 (135)
T ss_dssp HHHHSCCCCCTTTHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHH
Confidence 99999986 7888887764
No 10
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.91 E-value=7.3e-25 Score=159.89 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=81.6
Q ss_pred CchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeC--CCCHHHHHHHHHh
Q 039068 71 FVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIP--GVPHEAVYAFVRF 148 (166)
Q Consensus 71 ~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~--gV~~~~l~~lL~F 148 (166)
.|+..+++.|++||+++.+|||+|.+ +|++|+|||+|||++||||++||.++ ....|.|. ++++++++.+|+|
T Consensus 4 ~h~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~ 78 (116)
T 2vpk_A 4 HHCEHLLERLNKQREAGFLCDCTIVI-GEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEF 78 (116)
T ss_dssp HHHHHHHHHHHHHHHHTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEE-CCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHH
Confidence 47889999999999999999999999 57899999999999999999999886 35578888 9999999999999
Q ss_pred HcCCchh----HHHHhhcccC
Q 039068 149 LYSSWYS----FVTKLLQLKT 165 (166)
Q Consensus 149 lYTg~i~----~a~~LL~lah 165 (166)
+|||++. ++..+|.+|+
T Consensus 79 ~Yt~~~~~~~~~v~~ll~~A~ 99 (116)
T 2vpk_A 79 IYTGTLNLDSWNVKEIHQAAD 99 (116)
T ss_dssp HHHSCCCCCTTTHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHH
Confidence 9999986 7888887764
No 11
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.90 E-value=2.7e-24 Score=158.51 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=83.0
Q ss_pred CCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHh
Q 039068 69 CSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRF 148 (166)
Q Consensus 69 ~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~F 148 (166)
...++..+++.++++|+++.+|||+|.+ +|+.|+|||+|||++|+||++||.++ ...|.++++++++++.+|+|
T Consensus 11 ~~~~~~~l~~~l~~~~~~~~~~Dv~l~v-~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~~~~~~f~~~l~~ 84 (116)
T 3fkc_A 11 DIQYSGSLLNSLNEQRGHGLFCDVTVIV-EDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNY 84 (116)
T ss_dssp CTTHHHHHHHHHHHHHHHTTTCCEEEEE-TTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCceeEEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHh
Confidence 5678999999999999999999999999 57999999999999999999999875 46799999999999999999
Q ss_pred HcCCch-h----HHHHhhcccC
Q 039068 149 LYSSWY-S----FVTKLLQLKT 165 (166)
Q Consensus 149 lYTg~i-~----~a~~LL~lah 165 (166)
+|||++ . ++..||.+|+
T Consensus 85 ~Ytg~~~~~~~~~~~~ll~~A~ 106 (116)
T 3fkc_A 85 IYSSKIVRVRSDLLDELIKSGQ 106 (116)
T ss_dssp HTTSCCCSCCHHHHHHHHHHHH
T ss_pred hcCCCcCCCCHHHHHHHHHHHH
Confidence 999998 4 7888887764
No 12
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.8e-24 Score=160.94 Aligned_cols=93 Identities=15% Similarity=0.210 Sum_probs=84.0
Q ss_pred CCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeC-CCCHHHHHHHH
Q 039068 68 HCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIP-GVPHEAVYAFV 146 (166)
Q Consensus 68 ~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~-gV~~~~l~~lL 146 (166)
.+..++..+++.|++||+++.+|||+|.+ +|+.|+|||+|||++|+||++||.+. ....|.|+ ++++++++.+|
T Consensus 12 ~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~~~~~~~f~~ll 86 (129)
T 3ga1_A 12 EIPNFGNSILECLNEQRLQGLYCDVSVVV-KGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPAAVQPQSFQQIL 86 (129)
T ss_dssp ECTTHHHHHHHHHHHHHHTTCSCCEEEEE-TTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCTTCCHHHHHHHH
T ss_pred ecCcHHHHHHHHHHHHHhcCCCcceEEEE-CCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECCCCCHHHHHHHH
Confidence 46678999999999999999999999999 57999999999999999999999886 55689996 99999999999
Q ss_pred HhHcCCchh----HHHHhhcccC
Q 039068 147 RFLYSSWYS----FVTKLLQLKT 165 (166)
Q Consensus 147 ~FlYTg~i~----~a~~LL~lah 165 (166)
+|+|||+++ ++..||.+|+
T Consensus 87 ~~iYtg~~~i~~~~~~~ll~~A~ 109 (129)
T 3ga1_A 87 SFCYTGRLSMNVGDQDLLMYTAG 109 (129)
T ss_dssp HHHHHSEEECCTTTHHHHHHHHH
T ss_pred HHHhCCccccCHHHHHHHHHHHH
Confidence 999999986 7777777664
No 13
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.90 E-value=3e-24 Score=160.14 Aligned_cols=90 Identities=18% Similarity=0.257 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCch
Q 039068 75 ETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWY 154 (166)
Q Consensus 75 ~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~i 154 (166)
.+.+.+++||+++.+|||+|.+ +|+.|+|||.||+++|+||++||.+++.|+....|.|+++++++++.+|+|+|||++
T Consensus 11 ~l~~~l~~l~~~~~~~Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~ 89 (145)
T 4eoz_A 11 RLADELGGLWENSRFTDCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA 89 (145)
T ss_dssp CHHHHHHHHHHHTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCCCCcceEEEE-CCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCcc
Confidence 3788999999999999999999 578999999999999999999999998888888999999999999999999999998
Q ss_pred h----HHHHhhcccC
Q 039068 155 S----FVTKLLQLKT 165 (166)
Q Consensus 155 ~----~a~~LL~lah 165 (166)
+ ++..+|.+|+
T Consensus 90 ~~~~~~~~~ll~~A~ 104 (145)
T 4eoz_A 90 PNLDKMADDLLAAAD 104 (145)
T ss_dssp TTGGGTHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 6 7777777764
No 14
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.90 E-value=1.2e-24 Score=156.21 Aligned_cols=82 Identities=23% Similarity=0.308 Sum_probs=70.2
Q ss_pred HHhhCCCccEEEEcCCC---eeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCchh----
Q 039068 83 LFKEGNGADVYAVTEDK---SCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWYS---- 155 (166)
Q Consensus 83 Lr~e~~l~DV~I~v~~G---~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~---- 155 (166)
||+++.+|||+|.+++| +.|+|||+|||++||||++||.++++|+. ..|.|+++++++++.+|+|+|||++.
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~ 80 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEAD 80 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence 68899999999999754 89999999999999999999999998877 89999999999999999999999986
Q ss_pred HHHHhhcccC
Q 039068 156 FVTKLLQLKT 165 (166)
Q Consensus 156 ~a~~LL~lah 165 (166)
++..+|.+|+
T Consensus 81 ~~~~ll~~A~ 90 (109)
T 2vkp_A 81 TVLATLYAAK 90 (109)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7888887775
No 15
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.89 E-value=1.4e-24 Score=159.81 Aligned_cols=90 Identities=14% Similarity=0.144 Sum_probs=81.0
Q ss_pred CCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhH
Q 039068 70 SFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFL 149 (166)
Q Consensus 70 ~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~Fl 149 (166)
..|+..+++.|++||+++.+|||+|.+ +|+.|+|||+|||++||||++||.+. ...|.++++++++++.+|+|+
T Consensus 8 ~~h~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~ 81 (119)
T 2q81_A 8 PQHSQHVLEQLNQQRQLGLLCDCTFVV-DGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLDISNAAGLGQVLEFM 81 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGGGCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCCcceEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHHH
Confidence 467889999999999999999999999 57899999999999999999999873 346788999999999999999
Q ss_pred cCCchh----HHHHhhcccC
Q 039068 150 YSSWYS----FVTKLLQLKT 165 (166)
Q Consensus 150 YTg~i~----~a~~LL~lah 165 (166)
|||++. ++..||.+|+
T Consensus 82 Ytg~~~i~~~~~~~ll~~A~ 101 (119)
T 2q81_A 82 YTAKLSLSPENVDDVLAVAT 101 (119)
T ss_dssp HHSCCCCCTTTHHHHHHHHH
T ss_pred cCCCCccCHHHHHHHHHHHH
Confidence 999986 7888887764
No 16
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.89 E-value=4.6e-24 Score=176.34 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=82.0
Q ss_pred CCCCchHHHHHHHHHHHhhCCCccEEEEcC--CCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeC------CCCH
Q 039068 68 HCSFVPKETKDVWDKLFKEGNGADVYAVTE--DKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIP------GVPH 139 (166)
Q Consensus 68 ~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~--~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~------gV~~ 139 (166)
....|+..+++.|++||++|.+|||+|+++ +|++|+|||+|||++||||++||+++++|+....|.|+ ++++
T Consensus 11 ~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~ 90 (279)
T 3i3n_A 11 ECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEP 90 (279)
T ss_dssp ECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCH
T ss_pred CCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCH
Confidence 457899999999999999999999999995 38899999999999999999999999999989999998 9999
Q ss_pred HHHHHHHHhHcCCchh----HHHHhhcccC
Q 039068 140 EAVYAFVRFLYSSWYS----FVTKLLQLKT 165 (166)
Q Consensus 140 ~~l~~lL~FlYTg~i~----~a~~LL~lah 165 (166)
++++.+|+|+|||++. ++..||.+|+
T Consensus 91 ~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~ 120 (279)
T 3i3n_A 91 DTVEAVIEYMYTGRIRVSTGSVHEVLELAD 120 (279)
T ss_dssp HHHHHHHHHHHHSEEEEETTTHHHHHHHHH
T ss_pred HHHHHHHHhhCcCCcccCHHHHHHHHHHHH
Confidence 9999999999999987 7777777764
No 17
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.89 E-value=1.6e-23 Score=160.23 Aligned_cols=90 Identities=18% Similarity=0.257 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCch
Q 039068 75 ETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWY 154 (166)
Q Consensus 75 ~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~i 154 (166)
.+.+.|++||+++.+|||+|.+ +|+.|+|||.||+++|+||++||.++++|+....|.|+++++++++.+|+|+|||++
T Consensus 20 ~l~~~l~~l~~~~~~~Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~ 98 (172)
T 3htm_A 20 RLADELGGLWENSRFTDCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA 98 (172)
T ss_dssp CHHHHHHHHHHHTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCCCCcceEEEE-CCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCC
Confidence 4788999999999999999999 578999999999999999999999999988889999999999999999999999998
Q ss_pred h----HHHHhhcccC
Q 039068 155 S----FVTKLLQLKT 165 (166)
Q Consensus 155 ~----~a~~LL~lah 165 (166)
. ++..+|.+|+
T Consensus 99 ~~~~~~~~~ll~~A~ 113 (172)
T 3htm_A 99 PNLDKMADDLLAAAD 113 (172)
T ss_dssp TTGGGTHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 6 7777777764
No 18
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.88 E-value=1.2e-23 Score=171.54 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=79.1
Q ss_pred CCCCchHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCC--CCccceEEeCCCCHHHHHHH
Q 039068 68 HCSFVPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKV--NNDFIYIKIPGVPHEAVYAF 145 (166)
Q Consensus 68 ~~~~~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~--E~~~~~I~I~gV~~~~l~~l 145 (166)
....|+..+++.|++||+++.+|||+|.+ +|++|+|||+|||++||||++||++++. |+....|.|+|+++++|+.+
T Consensus 10 ~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v-~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~l 88 (256)
T 3hve_A 10 SDPQHAARLLRALSSFREESRFCDAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREI 88 (256)
T ss_dssp CCTTTHHHHHHHHHTCCC--CCCCEEEEE-TTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCCcceEEEE-CCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHH
Confidence 35678999999999999999999999999 5799999999999999999999999876 56778999999999999999
Q ss_pred HHhHcCCchh----HHHHhhcccC
Q 039068 146 VRFLYSSWYS----FVTKLLQLKT 165 (166)
Q Consensus 146 L~FlYTg~i~----~a~~LL~lah 165 (166)
|+|+|||+++ ++..+|.+|+
T Consensus 89 l~~~Yt~~~~i~~~~v~~ll~~A~ 112 (256)
T 3hve_A 89 LDYIFSGQIRLNEDTIQDVVQAAD 112 (256)
T ss_dssp HHHHHHSCCCCC-CCHHHHHHHHH
T ss_pred HhhccCCCCcccHhHHHHHHHHHH
Confidence 9999999986 7777777664
No 19
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.87 E-value=4.4e-23 Score=153.58 Aligned_cols=82 Identities=15% Similarity=0.113 Sum_probs=71.1
Q ss_pred chHHHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcC
Q 039068 72 VPKETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYS 151 (166)
Q Consensus 72 ~~~~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYT 151 (166)
++..+++.|+ |.++.+|||+|.+ +|++|+|||+||||+|+||++ ....|.|+||++++|+.+|+|+||
T Consensus 15 ~~~~~l~~l~--r~~~~~~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~v~~~~f~~ll~fiYt 82 (119)
T 3m5b_A 15 GSDRLVQLAA--RLRPALCDTLITV-GSQEFPAHSLVLAGVSQQLGR---------RGQWALGEGISPSTFAQLLNFVYG 82 (119)
T ss_dssp TTCHHHHHHH--HHTTTTCCEEEEE-TTEEEEECHHHHHTTCGGGCC---------CEEEECCSSCCHHHHHHHHHHHTT
T ss_pred chHHHHHHHH--HhcCCCcceEEEE-CCEEEeeEHHHHHHcCHHHhc---------CCCEEEeCCCCHHHHHHHHHHHcC
Confidence 3456777776 6789999999999 579999999999999999985 345799999999999999999999
Q ss_pred Cchh----HHHHhhcccC
Q 039068 152 SWYS----FVTKLLQLKT 165 (166)
Q Consensus 152 g~i~----~a~~LL~lah 165 (166)
|++. ++..||.+|+
T Consensus 83 g~~~i~~~~v~~ll~aA~ 100 (119)
T 3m5b_A 83 ESVELQPGELRPLQEAAR 100 (119)
T ss_dssp CCEEECGGGHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHHHHH
Confidence 9987 7888887764
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.87 E-value=4.4e-22 Score=166.25 Aligned_cols=90 Identities=18% Similarity=0.257 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhhCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCch
Q 039068 75 ETKDVWDKLFKEGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSWY 154 (166)
Q Consensus 75 ~~l~~l~~Lr~e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~i 154 (166)
.+.+.|++|++++.+|||+|.+ +|+.|+|||+||||+||||++||.+.++|+....|.|+++++++++.+|+|+|||++
T Consensus 160 ~l~~~l~~l~~~~~~~Dv~l~v-~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~ 238 (312)
T 3hqi_A 160 RLADELGGLWENSRFTDCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA 238 (312)
T ss_dssp CHHHHHHHHHHTTCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHhCCCCCceEEEE-CCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCC
Confidence 3788999999999999999999 578999999999999999999999999998889999999999999999999999988
Q ss_pred h----HHHHhhcccC
Q 039068 155 S----FVTKLLQLKT 165 (166)
Q Consensus 155 ~----~a~~LL~lah 165 (166)
. ++.+||.+|+
T Consensus 239 ~~~~~~~~~ll~~A~ 253 (312)
T 3hqi_A 239 PNLDKMADDLLAAAD 253 (312)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 6 7888888875
No 21
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.45 E-value=8.4e-14 Score=100.49 Aligned_cols=73 Identities=12% Similarity=0.171 Sum_probs=57.7
Q ss_pred EEEEcCCCeeehhhHHHHhhcCHHHHHhhcC--CCCCCccceEEeCCCCHHHHHHHHHhHc-----C---Cchh------
Q 039068 92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQ--SKVNNDFIYIKIPGVPHEAVYAFVRFLY-----S---SWYS------ 155 (166)
Q Consensus 92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~--~~~E~~~~~I~I~gV~~~~l~~lL~FlY-----T---g~i~------ 155 (166)
|+|+..||++|.+||.| |++|+||++||+. .+.|+....|.|++|++.+|+.+|+|+| + +.++
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~ 82 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 82 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence 67888899999999999 9999999999987 5667777899999999999999999999 5 4442
Q ss_pred -HHHHhhcccC
Q 039068 156 -FVTKLLQLKT 165 (166)
Q Consensus 156 -~a~~LL~lah 165 (166)
++.+||.+|+
T Consensus 83 ~~l~eLl~AAn 93 (97)
T 4ajy_C 83 EIALELLMAAN 93 (97)
T ss_dssp GGHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 6777776653
No 22
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.33 E-value=1.2e-12 Score=101.89 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=52.5
Q ss_pred EEEEcCCCeeehhhHHHHhhcCHHHHHhhcC-CCC-CCccceEEeCCCCHHHHHHHHHhHcCCc
Q 039068 92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQ-SKV-NNDFIYIKIPGVPHEAVYAFVRFLYSSW 153 (166)
Q Consensus 92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~-~~~-E~~~~~I~I~gV~~~~l~~lL~FlYTg~ 153 (166)
|+|...||++|.+||.| |++|+||++||+. ++. |+....|.|++|++.+|+.+|+|+|+++
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~ 65 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHK 65 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcC
Confidence 78887789999999999 9999999999998 666 6667789999999999999999999988
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=98.74 E-value=4.9e-09 Score=80.19 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=51.3
Q ss_pred EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCc
Q 039068 92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSW 153 (166)
Q Consensus 92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~ 153 (166)
|+|...||++|.+||.| |.+|+||++||+... ...|.|++|++.+|+.+|+|+|..+
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl~~V~~~iL~kVieyc~~h~ 60 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLPNVNAAILKKVIQWCTHHK 60 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECTTCCHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceecCCcCHHHHHHHHHHHHHhc
Confidence 78888899999999999 899999999998632 3479999999999999999999876
No 24
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.64 E-value=6.2e-08 Score=70.31 Aligned_cols=61 Identities=16% Similarity=0.160 Sum_probs=53.7
Q ss_pred cEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCc
Q 039068 91 DVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSW 153 (166)
Q Consensus 91 DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~ 153 (166)
-|+|...||++|.++|.+ |..|.++++||..++ +.....|.|++|++.+|+.+|+|+|..+
T Consensus 5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp~V~~~iL~kVieyc~~h~ 65 (99)
T 1hv2_A 5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELKQFDSHILEKAVEYLNYNL 65 (99)
T ss_dssp EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecCCcCHHHHHHHHHHHHHhc
Confidence 378888899999999997 899999999998855 5555689999999999999999999754
No 25
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.57 E-value=7.7e-08 Score=69.37 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=50.0
Q ss_pred EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCC-C-CCCccceEEeCCCCHHHHHHHHHhHcCCc
Q 039068 92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQS-K-VNNDFIYIKIPGVPHEAVYAFVRFLYSSW 153 (166)
Q Consensus 92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~-~-~E~~~~~I~I~gV~~~~l~~lL~FlYTg~ 153 (166)
|+|...||++|.++|.+ |..|.++++||... . .|.....|.+++|++.+|+.+|+|+|..+
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~ 65 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKV 65 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHcc
Confidence 67888899999999997 89999999999863 3 45555789999999999999999998754
No 26
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.47 E-value=2.1e-08 Score=78.08 Aligned_cols=58 Identities=9% Similarity=0.189 Sum_probs=28.9
Q ss_pred EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCCHHHHHHHHHhHcCCc
Q 039068 92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVPHEAVYAFVRFLYSSW 153 (166)
Q Consensus 92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~ 153 (166)
|+|+..||+.|.+||.| |.+|+||++||.... ....|.|++|++.+|+.+|+|+|..+
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~~V~~~iL~kVieyc~~h~ 63 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLPNVTSKILAKVIEYCKRHV 63 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------CCTTSCHHHHHHHHHC-----
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCCcCcHHHHHHHHHHHHHcc
Confidence 77887789999999999 899999999998753 23479999999999999999999986
No 27
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.92 E-value=1.3e-05 Score=59.36 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=49.6
Q ss_pred cEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCC--CCCCccceEEeCCCCHHHHHHHHHhHcCCc
Q 039068 91 DVYAVTEDKSCIPVHSSILSIASPVLGNILQQS--KVNNDFIYIKIPGVPHEAVYAFVRFLYSSW 153 (166)
Q Consensus 91 DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~--~~E~~~~~I~I~gV~~~~l~~lL~FlYTg~ 153 (166)
-|+|+..||.+|.++|.+ |..|..++.|+... ..|.....|.|++|++.+|+.+|+|+|-.+
T Consensus 18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~ 81 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKV 81 (112)
T ss_dssp EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhh
Confidence 478888899999999995 78999999999853 234444689999999999999999998643
No 28
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=97.75 E-value=3.8e-05 Score=60.37 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=50.3
Q ss_pred ccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCC----CccceEEeCCCCHHHHHHHHHhHcCCc
Q 039068 90 ADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVN----NDFIYIKIPGVPHEAVYAFVRFLYSSW 153 (166)
Q Consensus 90 ~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E----~~~~~I~I~gV~~~~l~~lL~FlYTg~ 153 (166)
.-|+|+..||..|.+++.| |..|.+++.|+.....+ .....|.|++|++.+|+.+|+|+|-.+
T Consensus 7 ~~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~ 73 (169)
T 3v7d_A 7 SNVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHR 73 (169)
T ss_dssp CEEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcc
Confidence 3578988899999999998 78999999999864321 233679999999999999999998643
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=96.98 E-value=0.0011 Score=48.04 Aligned_cols=62 Identities=10% Similarity=-0.035 Sum_probs=48.8
Q ss_pred EEEEcCCCeeehhhHHHHhhcC-HHHHHhhcCCCC----CCccceEEeCCCCHHHHHHHHHhHcCCchh
Q 039068 92 VYAVTEDKSCIPVHSSILSIAS-PVLGNILQQSKV----NNDFIYIKIPGVPHEAVYAFVRFLYSSWYS 155 (166)
Q Consensus 92 V~I~v~~G~~i~AHr~VLAA~S-pYFraMF~~~~~----E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~ 155 (166)
|+|.| ||..|...+..|.... .+|.+||..... ......+-| |-+++.++.||+|+.+|++.
T Consensus 8 v~LNV-GG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~ 74 (107)
T 3drz_A 8 VRLNV-GGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLV 74 (107)
T ss_dssp EEEEE-TTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCC
T ss_pred EEEEE-CCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeC
Confidence 46888 6899999999998775 478999976421 123345655 89999999999999999874
No 30
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=89.65 E-value=0.095 Score=38.61 Aligned_cols=62 Identities=6% Similarity=-0.089 Sum_probs=45.8
Q ss_pred EEEEcCCCeeehhhHHHHhhcCH-HHHHhhcCCCC-CCccceEEeCCCCHHHHHHHHHhHcCCchh
Q 039068 92 VYAVTEDKSCIPVHSSILSIASP-VLGNILQQSKV-NNDFIYIKIPGVPHEAVYAFVRFLYSSWYS 155 (166)
Q Consensus 92 V~I~v~~G~~i~AHr~VLAA~Sp-YFraMF~~~~~-E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~ 155 (166)
|+|.| ||..|..-+..|..... .|..||..... ......+-| |-++..++.||+|+-+|++.
T Consensus 7 V~LNV-GG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~ 70 (115)
T 3kvt_A 7 VIINV-GGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLH 70 (115)
T ss_dssp EEEEE-TTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBC
T ss_pred EEEEE-CCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCC
Confidence 67889 68999999999986632 45667754221 123345555 78999999999999999874
No 31
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=88.48 E-value=0.19 Score=40.87 Aligned_cols=67 Identities=9% Similarity=-0.033 Sum_probs=49.5
Q ss_pred CCCccE-EEEcCCCeeehhhHHHHhhcC-HHHHHhhcCCCC----CCccceEEeCCCCHHHHHHHHHhHcCCchh
Q 039068 87 GNGADV-YAVTEDKSCIPVHSSILSIAS-PVLGNILQQSKV----NNDFIYIKIPGVPHEAVYAFVRFLYSSWYS 155 (166)
Q Consensus 87 ~~l~DV-~I~v~~G~~i~AHr~VLAA~S-pYFraMF~~~~~----E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~ 155 (166)
|...++ +|.| ||..|..-+..|.... .+|..||..... ......+-| |-++..|+.||+|+-+|++.
T Consensus 8 g~~~~~V~LNV-GG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~ 80 (202)
T 3drx_A 8 GSVSKWVRLNV-GGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLV 80 (202)
T ss_dssp SCCCCEEEEEE-TTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCC
T ss_pred CCCCCEEEEEE-CCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccC
Confidence 344454 6788 6899999999998654 378999876421 112344555 78999999999999999874
No 32
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=79.15 E-value=0.5 Score=33.88 Aligned_cols=62 Identities=13% Similarity=0.014 Sum_probs=42.7
Q ss_pred EEEEcCCCeeehhhHHHHhhcCH-HHHHhhcCCCC-CCccceEEeCCCCHHHHHHHHHhHcC-Cchh
Q 039068 92 VYAVTEDKSCIPVHSSILSIASP-VLGNILQQSKV-NNDFIYIKIPGVPHEAVYAFVRFLYS-SWYS 155 (166)
Q Consensus 92 V~I~v~~G~~i~AHr~VLAA~Sp-YFraMF~~~~~-E~~~~~I~I~gV~~~~l~~lL~FlYT-g~i~ 155 (166)
|+|.| ||..|...+..|..--. .+..|+..... ......+-| |-++..++.||+|+-| |++.
T Consensus 3 v~LNV-GG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~ 67 (100)
T 1t1d_A 3 VVINV-SGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLR 67 (100)
T ss_dssp EEEEE-TTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCC
T ss_pred EEEEE-CCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCccc
Confidence 67889 68999999999965321 23444432111 123345655 8899999999999999 8874
No 33
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=76.47 E-value=1.3 Score=32.82 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=41.7
Q ss_pred EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCC----CCccceEEeCCCCHHHHHHHHHhHcCCchh
Q 039068 92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQSKV----NNDFIYIKIPGVPHEAVYAFVRFLYSSWYS 155 (166)
Q Consensus 92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~----E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~ 155 (166)
|+|.| ||..|..-+..|.... ..||....+ ......+-| |-++..|+.||+|+-||++.
T Consensus 15 V~LNV-GG~~F~t~~~TL~~~p---~S~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~ 77 (124)
T 1s1g_A 15 IVLNV-SGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLH 77 (124)
T ss_dssp EEEEE-TTEEEEEEHHHHTTST---TSSTTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBC
T ss_pred EEEEe-CCEEEEEeHHHHhcCC---CceecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCC
Confidence 57888 6899999999997542 234433111 112345555 77999999999999999874
No 34
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=75.25 E-value=1.7 Score=32.89 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=42.1
Q ss_pred EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCC----CCccceEEeCCCCHHHHHHHHHhHcCCchh
Q 039068 92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQSKV----NNDFIYIKIPGVPHEAVYAFVRFLYSSWYS 155 (166)
Q Consensus 92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~----E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~ 155 (166)
|+|.| ||..|..-+..|...- ..||....+ ......+-| |-++..|+.||+|+-||++.
T Consensus 37 V~LNV-GG~~F~T~~~TL~~~P---~S~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~ 99 (140)
T 2nz0_B 37 IVLNV-SGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLH 99 (140)
T ss_dssp EEEEE-TTEEEEEEHHHHHTCT---TSTTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBC
T ss_pred EEEEE-CCEEEEeeHHHHhcCC---CeeecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcC
Confidence 67889 6899999999997532 234443211 112344555 78999999999999999874
No 35
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=72.15 E-value=1.1 Score=32.12 Aligned_cols=59 Identities=7% Similarity=0.008 Sum_probs=41.9
Q ss_pred EEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCC----CCccceEEeCCCCHHHHHHHHHhHcCCchh
Q 039068 92 VYAVTEDKSCIPVHSSILSIASPVLGNILQQSKV----NNDFIYIKIPGVPHEAVYAFVRFLYSSWYS 155 (166)
Q Consensus 92 V~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~----E~~~~~I~I~gV~~~~l~~lL~FlYTg~i~ 155 (166)
|+|.| ||..|..-+..|..... .||....+ ......+-| |-+++.++.||+|+-||++.
T Consensus 2 V~LNV-GG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~ 64 (105)
T 1nn7_A 2 IVLNV-SGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLH 64 (105)
T ss_dssp EEEEE-TTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBC
T ss_pred EEEEE-CCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCC
Confidence 68899 68999999999975432 34443111 112334554 77999999999999999874
No 36
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=60.58 E-value=3.8 Score=22.95 Aligned_cols=9 Identities=56% Similarity=0.940 Sum_probs=4.3
Q ss_pred CCCCCCCCC
Q 039068 47 LEPPPLPIK 55 (166)
Q Consensus 47 p~ppp~p~~ 55 (166)
|-|||+|+.
T Consensus 2 PPPPplPg~ 10 (26)
T 2v8f_C 2 PPPPPLPGV 10 (26)
T ss_pred cCCCCCCCC
Confidence 445555543
No 37
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=40.85 E-value=14 Score=33.08 Aligned_cols=62 Identities=10% Similarity=-0.024 Sum_probs=40.6
Q ss_pred EEEEcCCCeeehhhHHHHhhcCHHH-HHhhcCCC-CCCccceEEeCCCCHHHHHHHHHhHcC-Cchh
Q 039068 92 VYAVTEDKSCIPVHSSILSIASPVL-GNILQQSK-VNNDFIYIKIPGVPHEAVYAFVRFLYS-SWYS 155 (166)
Q Consensus 92 V~I~v~~G~~i~AHr~VLAA~SpYF-raMF~~~~-~E~~~~~I~I~gV~~~~l~~lL~FlYT-g~i~ 155 (166)
|+|.| ||..|...+..|..--.-+ ..|+.... -....+++-+ |-+++.++.+|+|+.| |++.
T Consensus 54 v~lNV-gG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l~ 118 (514)
T 2r9r_B 54 VVINI-SGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLR 118 (514)
T ss_dssp EEEEE-TTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEE-CSCHHHHHHHHHHHHHTSCCC
T ss_pred EEEEe-CCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEE-cCChHHHHHHHHHHhcCCccc
Confidence 46788 6899999999996432111 12222111 0122345555 8899999999999999 8874
No 38
>3ccd_A Phosphocarrier protein HPR; succinimide, isoaspartate, protein damage, autophosphatase, transferase; 1.00A {Escherichia coli} PDB: 1cm3_A 1cm2_A 1ggr_B 1hdn_A 1j6t_B 1pfh_A* 1poh_A 1vrc_C 2jel_P 2xdf_C 3eza_B 3ezb_B 3eze_B 1opd_A
Probab=26.89 E-value=1.3e+02 Score=20.19 Aligned_cols=55 Identities=13% Similarity=0.250 Sum_probs=36.4
Q ss_pred hCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCC-HHHHHHHHHhHc
Q 039068 86 EGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVP-HEAVYAFVRFLY 150 (166)
Q Consensus 86 e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~-~~~l~~lL~FlY 150 (166)
.+..|||+|.. +|+.+.| |.||+ ++.=+.+.+..-+|...|-+ .++++.|.+|+-
T Consensus 27 ~~f~s~I~i~~-~~~~vna-KSim~--------lm~Lg~~~G~~i~i~~~G~De~~A~~~l~~~~~ 82 (85)
T 3ccd_A 27 KGFTSEITVTS-NGKSASA-KSLFK--------LQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMA 82 (85)
T ss_dssp TTSCSEEEEEE-TTEEEET-TCHHH--------HTTSCCCTTCEEEEEEESTTHHHHHHHHHHHHT
T ss_pred hhCCCeEEEEE-CCEEEeh-HhHHH--------HHhCCCCCCCEEEEEEeCCCHHHHHHHHHHHHH
Confidence 46679999987 6788887 55554 33333333444567778877 567888888764
No 39
>1kkl_H Phosphocarrier protein HPR; phosphorylation, protein kinase, bacteria, protein/protein interaction, transferase; 2.80A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1kkm_H*
Probab=26.45 E-value=1.2e+02 Score=21.24 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=36.6
Q ss_pred hCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCC-HHHHHHHHHhHcC
Q 039068 86 EGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVP-HEAVYAFVRFLYS 151 (166)
Q Consensus 86 e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~-~~~l~~lL~FlYT 151 (166)
....|||+|.. +|+.+.| |.||+ ++.=+.+....-+|...|-+ .++++.|.+|+-.
T Consensus 39 ~~f~s~I~i~~-~~~~vdA-KSIm~--------lmsLg~~~G~~i~i~a~G~Dee~Al~~l~~li~~ 95 (100)
T 1kkl_H 39 SKYDADVNLEY-NGKTVNL-KSIMG--------VMSLGIAKGAEITISASGADENDALNALEETMKS 95 (100)
T ss_dssp HTCSSEEEEEE-TTEEEET-TCHHH--------HHHTCCCTTCEEEEEEESTTHHHHHHHHHHHHHH
T ss_pred hhCCCeEEEEE-CCEEEec-HhHHH--------HhcCCCCCCCEEEEEEeCCCHHHHHHHHHHHHHh
Confidence 45679999987 5788887 55553 23333333444456777877 5778888888753
No 40
>1y51_A Phosphocarrier protein HPR; bacillus stearothermophilus HPR F29W mutant, transport protein; 1.65A {Geobacillus stearothermophilus} PDB: 1y50_A 1y4y_A 2nzu_L* 1rzr_T* 2nzv_L* 2oen_L* 2fep_S* 3oqm_S* 3oqn_S* 3oqo_S*
Probab=25.69 E-value=1.3e+02 Score=20.18 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=36.2
Q ss_pred hCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCC-HHHHHHHHHhHc
Q 039068 86 EGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVP-HEAVYAFVRFLY 150 (166)
Q Consensus 86 e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~-~~~l~~lL~FlY 150 (166)
.+..|||+|.. +|+.+.| |.||+ ++.=+.+....-+|...|-+ .++++.|-+|+-
T Consensus 27 ~~f~s~I~i~~-~~~~vda-KSim~--------lm~L~~~~g~~i~i~~~G~De~~A~~~l~~l~~ 82 (88)
T 1y51_A 27 SKWNSEIQLEY-NGKTVNL-KSIMG--------VMSLGIPKGATIKITAEGADAAEAMAALTDTLA 82 (88)
T ss_dssp HTSSSEEEEEE-TTEEEET-TCHHH--------HHHTCCCTTCEEEEEEESTTHHHHHHHHHHHHH
T ss_pred hhCCCeEEEEE-CCEEEeh-HhHHH--------HHhcCCCCCCEEEEEEeCCCHHHHHHHHHHHHH
Confidence 46679999987 6788887 45553 33333333444456678887 577888888774
No 41
>1sph_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 2.00A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1jem_A* 2hid_A 2hpr_A
Probab=22.00 E-value=1.4e+02 Score=20.02 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=36.3
Q ss_pred hCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCC-HHHHHHHHHhHc
Q 039068 86 EGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVP-HEAVYAFVRFLY 150 (166)
Q Consensus 86 e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~-~~~l~~lL~FlY 150 (166)
.+..|||+|.. +|+.+.| |.||+ ++.=+.+....-+|...|-+ .++++.|.+|+-
T Consensus 27 ~~f~s~I~i~~-~~~~vna-KSim~--------lm~L~~~~g~~i~i~~~G~De~~A~~~l~~l~~ 82 (88)
T 1sph_A 27 SKYDADVNLEY-NGKTVNL-KDIMG--------VMSLGIAKGAEITISASGADENDALNALEETMK 82 (88)
T ss_dssp TTSSSEEEEEE-TTEEEET-TCHHH--------HHHHCCCTTCEEEEEEESTTHHHHHHHHHHHHH
T ss_pred hhCCCeEEEEE-CCEEEeh-HhHHH--------HHhcCCCCCCEEEEEEeCCCHHHHHHHHHHHHH
Confidence 46779999987 6788887 55554 22223333444467778877 577888888875
No 42
>1pch_A Phosphocarrier protein; phosphotransferase; 1.80A {Mycoplasma capricolum} SCOP: d.94.1.1
Probab=21.39 E-value=1.3e+02 Score=20.39 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=36.9
Q ss_pred hCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCC-HHHHHHHHHhHcCC
Q 039068 86 EGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVP-HEAVYAFVRFLYSS 152 (166)
Q Consensus 86 e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~-~~~l~~lL~FlYTg 152 (166)
....|||+|.. +|+.+.| |.||+ ++.=+.+....-+|...|-+ .++++.|.+|+-.+
T Consensus 26 ~~f~s~I~i~~-~~~~vda-KSim~--------lmsLg~~~G~~i~i~a~G~De~~Al~~l~~l~~~~ 83 (88)
T 1pch_A 26 SKFSSNITIIA-NEKQGNL-KSIMN--------VMAMAIKTGTEITIQADGNDADQAIQAIKQTMIDT 83 (88)
T ss_dssp TTCSSEEEEEE-TTEEEET-TCHHH--------HHHHCCCTTCEEEEEEESTTHHHHHHHHHHHHHHT
T ss_pred hhCCCeEEEEE-CCEEEeh-HhHHH--------HHhcCCCCCCEEEEEEeCCCHHHHHHHHHHHHHhC
Confidence 46679999987 6788887 44553 22223333444567778877 57788888887443
No 43
>1ptf_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 1.60A {Enterococcus faecalis} SCOP: d.94.1.1 PDB: 1qfr_A 1fu0_A*
Probab=21.34 E-value=1.6e+02 Score=19.90 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=36.0
Q ss_pred hCCCccEEEEcCCCeeehhhHHHHhhcCHHHHHhhcCCCCCCccceEEeCCCC-HHHHHHHHHhHc
Q 039068 86 EGNGADVYAVTEDKSCIPVHSSILSIASPVLGNILQQSKVNNDFIYIKIPGVP-HEAVYAFVRFLY 150 (166)
Q Consensus 86 e~~l~DV~I~v~~G~~i~AHr~VLAA~SpYFraMF~~~~~E~~~~~I~I~gV~-~~~l~~lL~FlY 150 (166)
.+..|||+|.. +|+.+.| |.||+ ++.=+.+....-+|...|-+ .++++.|.+|+-
T Consensus 27 ~~f~s~I~i~~-~~~~vna-KSim~--------lm~L~~~~g~~i~i~~~G~De~~A~~~l~~l~~ 82 (88)
T 1ptf_A 27 SKFNSDINLEY-KGKSVNL-KSIMG--------VMSLGVGQGSDVTITVDGADEAEGMAAIVETLQ 82 (88)
T ss_dssp TTCSSEEEEEE-TTEEEET-TCHHH--------HHHHCCCTTCEEEEEEESTTHHHHHHHHHHHHH
T ss_pred hhCCCeEEEEE-CCEEEeh-HhHHH--------HHhcCCCCCCEEEEEEeCCCHHHHHHHHHHHHH
Confidence 46779999987 6788887 45553 22222333344457777877 577888888875
No 44
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=20.14 E-value=44 Score=22.31 Aligned_cols=18 Identities=11% Similarity=0.307 Sum_probs=15.5
Q ss_pred eCCCCHHHHHHHHHhHcC
Q 039068 134 IPGVPHEAVYAFVRFLYS 151 (166)
Q Consensus 134 I~gV~~~~l~~lL~FlYT 151 (166)
+..+++++...|++|+|-
T Consensus 16 ~~~~~~~v~~~L~e~~~r 33 (68)
T 1taf_A 16 VQEYEPRVVNQLLEFTFR 33 (68)
T ss_dssp CCCBCTHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHH
Confidence 357999999999999974
Done!