BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039069
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T92|A Chain A, Crystal Structure Of The Taz2:cEBPEPSILON-Tad Chimera
Protein
Length = 121
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 15/99 (15%)
Query: 162 LQLHEAMEALLHICRDGCRTIGPRDKVLKGSQVACNFPACKGLEALVRHFSNCKTRVPGG 221
L + A+++L+H + CR C+ P+C+ ++ +V+H CK + GG
Sbjct: 11 LSIQRAIQSLVHAAQ--CRNAN------------CSLPSCQKMKRVVQHTKGCKRKTNGG 56
Query: 222 CVHCKRMWQLLELHSRMCNEPDLCKVPLCRHFKEKMQQQ 260
C CK++ L H++ C E + C VP C + K+K++QQ
Sbjct: 57 CPICKQLIALAAYHAKHCQE-NKCPVPFCLNIKQKLRQQ 94
>pdb|2KA6|A Chain A, Nmr Structure Of The Cbp-Taz2STAT1-Tad Complex
pdb|2KJE|A Chain A, Nmr Structure Of Cbp Taz2 And Adenoviral E1a Complex
Length = 92
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 17/105 (16%)
Query: 156 EERKVYLQLHEAMEALLHICRDGCRTIGPRDKVLKGSQVACNFPACKGLEALVRHFSNCK 215
E R++ +Q +++L+H C+ CR C+ P+C+ ++ +V+H CK
Sbjct: 4 ESRRLSIQ--RCIQSLVHACQ--CRNAN------------CSLPSCQKMKRVVQHTKGCK 47
Query: 216 TRVPGGCVHCKRMWQLLELHSRMCNEPDLCKVPLCRHFKEKMQQQ 260
+ GGC CK++ L H++ C E + C VP C + K K++QQ
Sbjct: 48 RKTNGGCPVCKQLIALCCYHAKHCQE-NKCPVPFCLNIKHKLRQQ 91
>pdb|2K8F|A Chain A, Structural Basis For The Regulation Of P53 Function By
P300
Length = 90
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 15/95 (15%)
Query: 162 LQLHEAMEALLHICRDGCRTIGPRDKVLKGSQVACNFPACKGLEALVRHFSNCKTRVPGG 221
L + A+++L+H + CR C+ P+C+ ++ +V+H CK + GG
Sbjct: 11 LSIQRAIQSLVHAAQ--CRNAN------------CSLPSCQKMKRVVQHTKGCKRKTNGG 56
Query: 222 CVHCKRMWQLLELHSRMCNEPDLCKVPLCRHFKEK 256
C CK++ L H++ C E + C VP C + K+K
Sbjct: 57 CPICKQLIALAAYHAKHCQE-NKCPVPFCLNIKQK 90
>pdb|1F81|A Chain A, Solution Structure Of The Taz2 Domain Of The
Transcriptional Adaptor Protein Cbp
Length = 88
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 17/101 (16%)
Query: 156 EERKVYLQLHEAMEALLHICRDGCRTIGPRDKVLKGSQVACNFPACKGLEALVRHFSNCK 215
E R++ +Q +++L+H C+ CR C+ P+C+ ++ +V+H CK
Sbjct: 5 ESRRLSIQ--RCIQSLVHACQ--CRNAN------------CSLPSCQKMKRVVQHTKGCK 48
Query: 216 TRVPGGCVHCKRMWQLLELHSRMCNEPDLCKVPLCRHFKEK 256
+ GGC CK++ L H++ C E + C VP C + K K
Sbjct: 49 RKTNGGCPVCKQLIALCCYHAKHCQE-NKCPVPFCLNIKHK 88
>pdb|3IO2|A Chain A, Crystal Structure Of The Taz2 Domain Of P300
Length = 114
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 19/91 (20%)
Query: 162 LQLHEAMEALLHI--CRDGCRTIGPRDKVLKGSQVACNFPACKGLEALVRHFSNCKTRVP 219
L + A+++L+H CR+ C+ P+C+ ++ +V+H CK +
Sbjct: 11 LSIQRAIQSLVHAAQCRNA----------------NCSLPSCQKMKRVVQHTKGCKRKTN 54
Query: 220 GGCVHCKRMWQLLELHSRMCNEPDLCKVPLC 250
GGC CK++ L H++ C E + C VP C
Sbjct: 55 GGCPICKQLIALAAYHAKHCQE-NKCPVPFC 84
>pdb|3P57|P Chain P, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2 On
Dna
Length = 112
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 15/89 (16%)
Query: 162 LQLHEAMEALLHICRDGCRTIGPRDKVLKGSQVACNFPACKGLEALVRHFSNCKTRVPGG 221
L + +++L+H C+ CR C+ P+C+ ++ +V+H CK + GG
Sbjct: 10 LSIQRCIQSLVHACQ--CRNAN------------CSLPSCQKMKRVVQHTKGCKRKTNGG 55
Query: 222 CVHCKRMWQLLELHSRMCNEPDLCKVPLC 250
C CK++ L H++ C E + C VP C
Sbjct: 56 CPICKQLIALCCYHAKHCQE-NKCPVPFC 83
>pdb|1WMQ|A Chain A, Structure Of The Hutp Antitermination Complex Bound To A
Single Stranded Region Of Hut Mrna
pdb|1WMQ|B Chain B, Structure Of The Hutp Antitermination Complex Bound To A
Single Stranded Region Of Hut Mrna
pdb|1WPS|A Chain A, Crystal Structure Of Hutp, An Rna Binding Anti-Termination
Protein
pdb|1WPS|B Chain B, Crystal Structure Of Hutp, An Rna Binding Anti-Termination
Protein
pdb|1WPV|A Chain A, Crystal Structure Of Activated Binary Complex Of Hutp, An
Rna Binding Anti-Termination Protein
pdb|1WPV|B Chain B, Crystal Structure Of Activated Binary Complex Of Hutp, An
Rna Binding Anti-Termination Protein
pdb|1WPV|C Chain C, Crystal Structure Of Activated Binary Complex Of Hutp, An
Rna Binding Anti-Termination Protein
pdb|1WPT|A Chain A, Crystal Structure Of Hutp, An Rna Binding Anti-Termination
Protein
pdb|1WPT|B Chain B, Crystal Structure Of Hutp, An Rna Binding Anti-Termination
Protein
pdb|1WPU|A Chain A, Crystal Structure Of The Hutp Antitermination Complex
Bound To A Single Stranded Region Of Hut Mrna
pdb|1WPU|B Chain B, Crystal Structure Of The Hutp Antitermination Complex
Bound To A Single Stranded Region Of Hut Mrna
pdb|1WRN|A Chain A, Metal Ion Dependency Of The Antiterminator Protein, Hutp,
For Binding To The Terminator Region Of Hut Mrna- A
Structural Basis
pdb|1WRN|B Chain B, Metal Ion Dependency Of The Antiterminator Protein, Hutp,
For Binding To The Terminator Region Of Hut Mrna- A
Structural Basis
pdb|1WRN|C Chain C, Metal Ion Dependency Of The Antiterminator Protein, Hutp,
For Binding To The Terminator Region Of Hut Mrna- A
Structural Basis
pdb|1WRO|A Chain A, Metal Ion Dependency Of The Antiterminator Protein, Hutp,
For Binding To The Terminator Region Of Hut Mrna- A
Structural Basis
pdb|1WRO|B Chain B, Metal Ion Dependency Of The Antiterminator Protein, Hutp,
For Binding To The Terminator Region Of Hut Mrna- A
Structural Basis
pdb|1WRO|C Chain C, Metal Ion Dependency Of The Antiterminator Protein, Hutp,
For Binding To The Terminator Region Of Hut Mrna- A
Structural Basis
pdb|1WRQ|A Chain A, Crystal Structure Of Hutp-Antitermination Complex
pdb|1WRQ|B Chain B, Crystal Structure Of Hutp-Antitermination Complex
pdb|3BOY|B Chain B, Crystal Structure Of The Hutp Antitermination Complex
Bound To The Hut Mrna
pdb|3BOY|C Chain C, Crystal Structure Of The Hutp Antitermination Complex
Bound To The Hut Mrna
pdb|3BOY|A Chain A, Crystal Structure Of The Hutp Antitermination Complex
Bound To The Hut Mrna
Length = 147
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 101 RLSLICVRMVVKDFKAITSTE-----GWKIMKRANPALEQELVESVVDEDSRKQERLRKV 155
R+ + V +++ + + T E GWK+ +++ V + ++ S+K ++
Sbjct: 7 RIGRLSVLLLLNEAEESTQVEELERDGWKVCLGKVGSMDAHKVIAAIETASKKSGVIQSE 66
Query: 156 EERKVYLQLHEAMEALLHICRDG------CRTIGPRDKVLKGS 192
R+ + H MEAL + R RT+G R VL+G+
Sbjct: 67 GYRESHALYHATMEALHGVTRGEMLLGSLLRTVGLRFAVLRGN 109
>pdb|1VEA|A Chain A, Crystal Structure Of Hutp, An Rna Binding Antitermination
Protein
pdb|1VEA|B Chain B, Crystal Structure Of Hutp, An Rna Binding Antitermination
Protein
pdb|2ZH0|H Chain H, Crystal Structure Of Ternary Complex Of
Hutp(Hutp-L-His-Zn)
pdb|2ZH0|J Chain J, Crystal Structure Of Ternary Complex Of
Hutp(Hutp-L-His-Zn)
pdb|2ZH0|O Chain O, Crystal Structure Of Ternary Complex Of
Hutp(Hutp-L-His-Zn)
pdb|2ZH0|B Chain B, Crystal Structure Of Ternary Complex Of
Hutp(Hutp-L-His-Zn)
pdb|2ZH0|C Chain C, Crystal Structure Of Ternary Complex Of
Hutp(Hutp-L-His-Zn)
pdb|2ZH0|D Chain D, Crystal Structure Of Ternary Complex Of
Hutp(Hutp-L-His-Zn)
pdb|2ZH0|F Chain F, Crystal Structure Of Ternary Complex Of
Hutp(Hutp-L-His-Zn)
pdb|2ZH0|G Chain G, Crystal Structure Of Ternary Complex Of
Hutp(Hutp-L-His-Zn)
pdb|2ZH0|K Chain K, Crystal Structure Of Ternary Complex Of
Hutp(Hutp-L-His-Zn)
pdb|2ZH0|L Chain L, Crystal Structure Of Ternary Complex Of
Hutp(Hutp-L-His-Zn)
pdb|2ZH0|N Chain N, Crystal Structure Of Ternary Complex Of
Hutp(Hutp-L-His-Zn)
pdb|2ZH0|P Chain P, Crystal Structure Of Ternary Complex Of
Hutp(Hutp-L-His-Zn)
Length = 148
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 101 RLSLICVRMVVKDFKAITSTE-----GWKIMKRANPALEQELVESVVDEDSRKQERLRKV 155
R+ + V +++ + + T E GWK+ +++ V + ++ S+K ++
Sbjct: 8 RIGRLSVLLLLNEAEESTQVEELERDGWKVCLGKVGSMDAHKVIAAIETASKKSGVIQSE 67
Query: 156 EERKVYLQLHEAMEALLHICRDG------CRTIGPRDKVLKGS 192
R+ + H MEAL + R RT+G R VL+G+
Sbjct: 68 GYRESHALYHATMEALHGVTRGEMLLGSLLRTVGLRFAVLRGN 110
>pdb|2GM4|A Chain A, An Activated, Tetrameric Gamma-Delta Resolvase: Hin
Chimaera Bound To Cleaved Dna
pdb|2GM4|B Chain B, An Activated, Tetrameric Gamma-Delta Resolvase: Hin
Chimaera Bound To Cleaved Dna
Length = 183
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 86 NVIDVLQLARNCDAPRLSLICV-----------RMVVKDFKAITSTEGWKIMKRANPALE 134
+ D++QL + DA +S+ + RMVV A+ E +I++R N +
Sbjct: 72 DTADMIQLIKEFDAQGVSIRFIDDSIDTSSAMGRMVVTILSAVAQAERQRILQRTNEGRQ 131
Query: 135 QELVESVVDEDSRKQER 151
+ + + VV RK +R
Sbjct: 132 EAMAKGVVFGRKRKIDR 148
>pdb|3RRC|A Chain A, Crystal Structure Of Region Ii From Plasmodium Vivax Duffy
Binding Protein
pdb|3RRC|B Chain B, Crystal Structure Of Region Ii From Plasmodium Vivax Duffy
Binding Protein
Length = 317
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 244 LCKVPLCRHFKEKMQQQSKKDEAKWKLLVSKVISAKKA 281
+CKVP C++ + Q + + +W +L +K IS K A
Sbjct: 218 VCKVPPCQNACKSYDQWITRKKNQWDVLSNKFISVKNA 255
>pdb|1L3E|B Chain B, Nmr Structures Of The Hif-1alpha CtadP300 CH1 COMPLEX
pdb|1P4Q|B Chain B, Solution Structure Of The Cited2 Transactivation Domain In
Complex With The P300 Ch1 Domain
Length = 101
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 185 RDKVLKGSQVACNFPACKGLEALVRHFSNCKTRVPGGCVHCKRMWQLLELHSRMCNEPDL 244
R + G CN P C+ ++ ++ H ++C++ HC Q++ H + C D
Sbjct: 31 RREQANGEVRQCNLPHCRTMKNVLNHMTHCQSGKSCQVAHCASSRQIIS-HWKNCTRHD- 88
Query: 245 CKVPLC 250
P+C
Sbjct: 89 --CPVC 92
>pdb|1U2N|A Chain A, Structure Cbp Taz1 Domain
Length = 100
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 185 RDKVLKGSQVACNFPACKGLEALVRHFSNCKTRVPGGC--VHCKRMWQLLELHSRMCNEP 242
R + G AC+ P C+ ++ ++ H ++C+ P C HC Q++ H + C
Sbjct: 29 RREQANGEVRACSLPHCRTMKNVLNHMTHCQ--APKACQVAHCASSRQIIS-HWKNCTRH 85
Query: 243 DLCKVPLC 250
D P+C
Sbjct: 86 D---CPVC 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,873,583
Number of Sequences: 62578
Number of extensions: 282190
Number of successful extensions: 614
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 595
Number of HSP's gapped (non-prelim): 17
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)