Query 039069
Match_columns 293
No_of_seqs 298 out of 1494
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:01:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1778 CREB binding protein/P 100.0 2.7E-37 5.8E-42 282.7 10.6 270 1-280 46-316 (319)
2 PHA02790 Kelch-like protein; P 99.9 1.9E-25 4.2E-30 218.4 10.5 123 1-127 41-167 (480)
3 PHA02713 hypothetical protein; 99.9 4.5E-24 9.9E-29 212.1 14.5 146 1-158 46-204 (557)
4 PHA03098 kelch-like protein; P 99.9 1.3E-23 2.8E-28 207.8 13.7 143 1-157 31-184 (534)
5 KOG4441 Proteins containing BT 99.9 1.2E-23 2.6E-28 209.1 13.4 138 1-148 56-193 (571)
6 smart00551 ZnF_TAZ TAZ zinc fi 99.8 3E-21 6.6E-26 142.9 7.9 76 159-251 2-79 (79)
7 KOG4350 Uncharacterized conser 99.8 1.4E-19 3.1E-24 167.1 8.0 139 1-147 64-203 (620)
8 KOG4682 Uncharacterized conser 99.8 2.9E-18 6.4E-23 158.2 11.9 159 2-176 89-253 (488)
9 KOG2075 Topoisomerase TOP1-int 99.7 1E-15 2.2E-20 144.3 14.0 141 1-149 139-280 (521)
10 KOG4591 Uncharacterized conser 99.4 7.1E-13 1.5E-17 112.7 8.2 135 1-147 89-223 (280)
11 PF02135 zf-TAZ: TAZ zinc fing 99.4 1E-13 2.2E-18 102.1 2.4 72 163-250 2-75 (75)
12 KOG0783 Uncharacterized conser 99.4 6.8E-13 1.5E-17 131.7 8.8 124 1-125 731-858 (1267)
13 PF00651 BTB: BTB/POZ domain; 99.3 1.8E-12 3.9E-17 101.3 4.4 78 1-79 31-109 (111)
14 smart00225 BTB Broad-Complex, 99.3 7.7E-12 1.7E-16 92.6 6.6 72 1-74 19-90 (90)
15 KOG0511 Ankyrin repeat protein 98.4 1.6E-06 3.5E-11 80.6 8.9 122 3-126 312-442 (516)
16 KOG1987 Speckle-type POZ prote 98.0 6.7E-06 1.4E-10 75.6 5.2 125 1-128 120-249 (297)
17 PF07707 BACK: BTB And C-termi 98.0 1.3E-05 2.7E-10 61.6 5.3 55 87-148 1-55 (103)
18 smart00875 BACK BTB And C-term 97.7 4.4E-05 9.4E-10 58.0 4.4 54 87-147 1-54 (101)
19 KOG2716 Polymerase delta-inter 97.2 0.0014 3E-08 58.1 7.3 75 4-79 27-103 (230)
20 KOG2838 Uncharacterized conser 97.0 0.0006 1.3E-08 61.4 3.3 90 1-91 271-397 (401)
21 KOG3473 RNA polymerase II tran 96.4 0.011 2.4E-07 45.1 6.1 65 1-65 36-111 (112)
22 smart00512 Skp1 Found in Skp1 95.7 0.022 4.7E-07 44.2 5.1 65 2-66 22-104 (104)
23 PF11822 DUF3342: Domain of un 95.7 0.016 3.4E-07 53.7 4.8 73 5-79 28-102 (317)
24 KOG1724 SCF ubiquitin ligase, 94.3 0.1 2.3E-06 43.9 5.5 77 3-79 26-125 (162)
25 PF02135 zf-TAZ: TAZ zinc fing 93.5 0.21 4.6E-06 36.3 5.3 46 164-226 29-74 (75)
26 PF02214 BTB_2: BTB/POZ domain 93.3 0.033 7.2E-07 42.1 0.8 67 5-73 23-94 (94)
27 PF03931 Skp1_POZ: Skp1 family 93.0 0.15 3.2E-06 35.7 3.8 39 2-42 21-59 (62)
28 KOG2838 Uncharacterized conser 91.5 0.19 4.1E-06 45.6 3.3 67 1-67 150-219 (401)
29 KOG1665 AFH1-interacting prote 91.0 0.31 6.7E-06 43.1 4.1 86 6-93 35-128 (302)
30 KOG0783 Uncharacterized conser 90.7 0.23 5E-06 51.3 3.6 45 1-45 578-634 (1267)
31 smart00551 ZnF_TAZ TAZ zinc fi 89.8 0.64 1.4E-05 34.4 4.4 45 165-226 33-77 (79)
32 PF11822 DUF3342: Domain of un 87.7 0.37 8E-06 44.8 2.3 55 81-137 71-125 (317)
33 KOG2714 SETA binding protein S 85.4 1.5 3.2E-05 42.3 5.0 64 5-71 36-102 (465)
34 PF01466 Skp1: Skp1 family, di 83.9 1.5 3.2E-05 32.1 3.5 48 51-99 13-63 (78)
35 KOG2075 Topoisomerase TOP1-int 83.6 1.6 3.5E-05 42.6 4.5 58 81-141 184-246 (521)
36 PHA03098 kelch-like protein; P 78.5 3.9 8.5E-05 40.5 5.5 33 82-114 73-105 (534)
37 PF00651 BTB: BTB/POZ domain; 75.6 3.9 8.4E-05 30.9 3.7 30 84-113 81-110 (111)
38 PF07707 BACK: BTB And C-termi 73.4 15 0.00032 27.4 6.4 61 55-115 2-75 (103)
39 PHA02713 hypothetical protein; 62.4 11 0.00025 37.9 4.7 45 71-115 80-124 (557)
40 COG5201 SKP1 SCF ubiquitin lig 59.1 29 0.00062 28.2 5.4 58 22-79 40-120 (158)
41 smart00875 BACK BTB And C-term 54.1 41 0.00088 24.5 5.5 26 55-80 2-27 (101)
42 COG3357 Predicted transcriptio 53.0 25 0.00054 26.6 3.9 15 215-229 72-86 (97)
43 PF02637 GatB_Yqey: GatB domai 46.6 81 0.0018 25.6 6.6 76 23-118 33-110 (148)
44 PHA02790 Kelch-like protein; P 45.4 15 0.00034 36.1 2.4 43 71-113 75-119 (480)
45 KOG0511 Ankyrin repeat protein 39.4 19 0.00042 34.4 1.9 64 2-69 171-234 (516)
46 KOG2715 Uncharacterized conser 35.9 49 0.0011 28.2 3.6 56 23-80 66-121 (210)
47 KOG4441 Proteins containing BT 35.7 85 0.0018 31.8 6.0 33 81-113 101-133 (571)
48 smart00225 BTB Broad-Complex, 31.9 47 0.001 23.0 2.7 25 82-106 65-89 (90)
49 TIGR02183 GRXA Glutaredoxin, G 31.9 32 0.00069 25.2 1.7 17 220-236 8-24 (86)
50 PF01466 Skp1: Skp1 family, di 31.7 88 0.0019 22.6 4.0 34 82-115 11-44 (78)
51 KOG4682 Uncharacterized conser 25.9 53 0.0011 31.8 2.4 38 51-88 172-209 (488)
52 PF07035 Mic1: Colon cancer-as 25.7 3.6E+02 0.0078 22.7 7.3 38 88-125 124-161 (167)
53 smart00845 GatB_Yqey GatB doma 24.5 3.8E+02 0.0083 21.7 7.2 22 27-48 38-59 (147)
54 TIGR02425 decarb_PcaC 4-carbox 23.2 3.8E+02 0.0083 21.2 10.3 80 24-104 27-110 (123)
55 KOG3840 Uncharaterized conserv 20.9 96 0.0021 29.0 3.0 59 8-67 123-185 (438)
56 PRK11200 grxA glutaredoxin 1; 20.5 65 0.0014 23.2 1.6 15 220-234 9-23 (85)
57 PF00462 Glutaredoxin: Glutare 20.1 66 0.0014 21.4 1.5 15 220-234 7-21 (60)
No 1
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=100.00 E-value=2.7e-37 Score=282.71 Aligned_cols=270 Identities=45% Similarity=0.764 Sum_probs=233.8
Q ss_pred CCCCHHHHHHhcCCCCcCCcCeEEcCCCCHHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHhhcCcchHHHHHHHHHHhc
Q 039069 1 SIASPVLGNILQQSKVKNGFKYIKIPGVPHEAVYAFFRFLYSSCFEEEDLKKFVLHLLVLSHSYLVPPLKRVCEYFLEQG 80 (293)
Q Consensus 1 Aa~S~yF~aMf~~~~~E~~~~~I~L~~vs~~~~~~~L~flYtg~i~~~~~~~~v~~LL~lA~~y~v~~Lk~~C~~~L~~~ 80 (293)
+..||.|..+....-..+....+.+.+++..++..+.+++|.+ ++...+..+..+++.+++.|.++.++..|...+..+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~~~v~~~~~d~~~~~~~~ 124 (319)
T KOG1778|consen 46 GPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHVYVVPQPKADCDPILECG 124 (319)
T ss_pred cccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhhhhhhccCccccCCccccch
Confidence 3568888887765533344567888999999999999999998 666666789999999999999999999999999987
Q ss_pred CCChHhHHHHHHHhhhCChHHHHHHHHHHHHHhHHHHhcccccchhhhcChHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 039069 81 GLTKENVIDVLQLARNCDAPRLSLICVRMVVKDFKAITSTEGWKIMKRANPALEQELVESVVDEDSRKQERLRKVEERKV 160 (293)
Q Consensus 81 ~l~~~Nvv~il~lA~~~~~~~L~~~c~~~I~~nf~~v~~se~f~~L~~~~p~l~~ell~~ll~~d~~~~~w~~~~~e~~v 160 (293)
.++..|++.++..+..|+.+.|..++...+...|..+..+++|..+....+.+.. +..+...........+..+++..
T Consensus 125 ~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~~c~~c~~~~--~~~~~c~~~~d~d~~~~~~~k~~ 202 (319)
T KOG1778|consen 125 LFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAYTCPICKLEV--LTAWHCEVCPDYDRCRACEEKPL 202 (319)
T ss_pred hhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceeeecCcccccc--ccccccccCCchhhhhcccCCCC
Confidence 7899999999999999999999999999999999999999999999888888765 33433333333444555666666
Q ss_pred HHhHHHHHHHHHHHhhcCCcccCCCcccccCCCCCCCccchhhHHHHHHHHhhccccCCCCCcchHHHHHHHHHHHhcCC
Q 039069 161 YLQLHEAMEALLHICRDGCRTIGPRDKVLKGSQVACNFPACKGLEALVRHFSNCKTRVPGGCVHCKRMWQLLELHSRMCN 240 (293)
Q Consensus 161 y~~L~~~m~lL~h~~~~~c~~~~~~~~~~~~~~~~c~~~~c~~~~~l~~h~~~c~~r~~~gC~~C~~~~~l~~~ha~~c~ 240 (293)
|.++.+.|.. |.++|.++||..+...+..++|+|++|.+||.|++|+.+|++| |||++|++||+|++|||++|+
T Consensus 203 h~h~~~~~~~----~~~~~~~~~~~~~~i~~~~~~C~~~~C~~~k~lirH~~~Ck~R--~gC~iCk~m~~L~~lha~~c~ 276 (319)
T KOG1778|consen 203 HPHLYEAMES----CTDGCATIGPRNKSINRRDANCSYPSCNGLKRLIRHFRGCKLR--GGCPICKRLWQLLELHARHCD 276 (319)
T ss_pred CCcchhcccc----cccccccccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHHcc
Confidence 8888888877 7899999999999887667899999999999999999999999 999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHhchh-hHHHHHHHHHHHHHhhh
Q 039069 241 EPDLCKVPLCRHFKEKMQQQSKK-DEAKWKLLVSKVISAKK 280 (293)
Q Consensus 241 ~~~~c~vp~c~~~k~~~~~~~~~-~~~~~~~~~~~~~~~~~ 280 (293)
+++ |+||+|+++|+++++++++ ++.+|+++++.|..+.+
T Consensus 277 ~~~-C~vP~c~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T KOG1778|consen 277 DSK-CKVPLCRNLKQKLEKQQKQADERRWKLLVRRVAGTKA 316 (319)
T ss_pred ccc-CCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHhhhc
Confidence 986 9999999999999999887 78899999999888776
No 2
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=1.9e-25 Score=218.40 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=114.6
Q ss_pred CCCCHHHHHHhcCCCCcCCcCeEEc--CCCCHHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHhhcCcchHHHHHHHHHH
Q 039069 1 SIASPVLGNILQQSKVKNGFKYIKI--PGVPHEAVYAFFRFLYSSCFEEEDLKKFVLHLLVLSHSYLVPPLKRVCEYFLE 78 (293)
Q Consensus 1 Aa~S~yF~aMf~~~~~E~~~~~I~L--~~vs~~~~~~~L~flYtg~i~~~~~~~~v~~LL~lA~~y~v~~Lk~~C~~~L~ 78 (293)
||+||||++||+++|+|+.. +|.+ .|+++++|+.+|+|+|||++.++ .++|.+||.+|++||++.+++.|++||.
T Consensus 41 Aa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it--~~nV~~ll~aA~~Lqi~~v~~~C~~fL~ 117 (480)
T PHA02790 41 KKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYID--SHNVVNLLRASILTSVEFIIYTCINFIL 117 (480)
T ss_pred hhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEe--cccHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 78999999999999999964 4655 49999999999999999999766 7899999999999999999999999999
Q ss_pred hcCCChHhHHHHHHHhhhCChHHHHHHHHHHHHHhHHHHhcc--cccchhh
Q 039069 79 QGGLTKENVIDVLQLARNCDAPRLSLICVRMVVKDFKAITST--EGWKIMK 127 (293)
Q Consensus 79 ~~~l~~~Nvv~il~lA~~~~~~~L~~~c~~~I~~nf~~v~~s--e~f~~L~ 127 (293)
+ .|+++||++++.+|+.|++++|.+.+.+||.+||.+|.++ ++|..|+
T Consensus 118 ~-~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~ 167 (480)
T PHA02790 118 R-DFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLS 167 (480)
T ss_pred h-hCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCC
Confidence 9 6999999999999999999999999999999999999986 7888864
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.91 E-value=4.5e-24 Score=212.09 Aligned_cols=146 Identities=12% Similarity=0.197 Sum_probs=129.5
Q ss_pred CCCCHHHHHHhcCCCCcCC-cCeEEcCCCCHHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHhhcCcchHHHHHHHHHHh
Q 039069 1 SIASPVLGNILQQSKVKNG-FKYIKIPGVPHEAVYAFFRFLYSSCFEEEDLKKFVLHLLVLSHSYLVPPLKRVCEYFLEQ 79 (293)
Q Consensus 1 Aa~S~yF~aMf~~~~~E~~-~~~I~L~~vs~~~~~~~L~flYtg~i~~~~~~~~v~~LL~lA~~y~v~~Lk~~C~~~L~~ 79 (293)
||+||||++||+++|+|+. .++|+|+|+++++|+.+|+|+|||.+ + .+++.+||.+|++|+++.|++.|++||..
T Consensus 46 aa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~i--~--~~nv~~ll~aA~~lqi~~l~~~C~~~l~~ 121 (557)
T PHA02713 46 AAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRHI--S--SMNVIDVLKCADYLLIDDLVTDCESYIKD 121 (557)
T ss_pred hhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCCC--C--HHHHHHHHHHHHHHCHHHHHHHHHHHHHh
Confidence 6899999999999999864 78899999999999999999999985 3 67899999999999999999999999999
Q ss_pred cCCChHhHHHHHHHhhhCChHHHHHHHHHHHHHhHHHHhcccccchhhhcChHHHHHHHHHhhchHH-H-----------
Q 039069 80 GGLTKENVIDVLQLARNCDAPRLSLICVRMVVKDFKAITSTEGWKIMKRANPALEQELVESVVDEDS-R----------- 147 (293)
Q Consensus 80 ~~l~~~Nvv~il~lA~~~~~~~L~~~c~~~I~~nf~~v~~se~f~~L~~~~p~l~~ell~~ll~~d~-~----------- 147 (293)
.|+++||++++.+|..+....|.+.|.+||.+||.+|.++++|..| ..+.+..++.+|. +
T Consensus 122 -~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L-------~~~~l~~lL~~d~~l~v~~Ee~v~ea 193 (557)
T PHA02713 122 -YTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKT-------VFEILFDIISTNDNVYLYREGYKVTI 193 (557)
T ss_pred -hCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhC-------CHHHHHHHhccccccCCCcHHHHHHH
Confidence 6999999999998888888889999999999999999999999874 5666666666654 2
Q ss_pred HHHHHHHHHHH
Q 039069 148 KQERLRKVEER 158 (293)
Q Consensus 148 ~~~w~~~~~e~ 158 (293)
-.+|.+++.++
T Consensus 194 v~~W~~~d~~~ 204 (557)
T PHA02713 194 LLKWLEYNYIT 204 (557)
T ss_pred HHHHHhcCHHH
Confidence 15887776654
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.90 E-value=1.3e-23 Score=207.75 Aligned_cols=143 Identities=10% Similarity=0.203 Sum_probs=127.3
Q ss_pred CCCCHHHHHHhcCCCCcCCcCeEEcCCCCHHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHhhcCcchHHHHHHHHHHhc
Q 039069 1 SIASPVLGNILQQSKVKNGFKYIKIPGVPHEAVYAFFRFLYSSCFEEEDLKKFVLHLLVLSHSYLVPPLKRVCEYFLEQG 80 (293)
Q Consensus 1 Aa~S~yF~aMf~~~~~E~~~~~I~L~~vs~~~~~~~L~flYtg~i~~~~~~~~v~~LL~lA~~y~v~~Lk~~C~~~L~~~ 80 (293)
|++||||++||+++|+ +.+|+|++ ++++|+.+|+|+|||.+..+ .+++.+||.+|++|+++.|++.|+++|..
T Consensus 31 aa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~--~~~~~~ll~~A~~l~~~~l~~~C~~~l~~- 103 (534)
T PHA03098 31 SSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINIT--SNNVKDILSIANYLIIDFLINLCINYIIK- 103 (534)
T ss_pred HhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEc--HHHHHHHHHHHHHhCcHHHHHHHHHHHHH-
Confidence 6789999999999987 56799999 99999999999999999665 78899999999999999999999999999
Q ss_pred CCChHhHHHHHHHhhhCChHHHHHHHHHHHHHhHHHHhcccccchhhhcChHHHHHHHHHhhchHHHH-----------H
Q 039069 81 GLTKENVIDVLQLARNCDAPRLSLICVRMVVKDFKAITSTEGWKIMKRANPALEQELVESVVDEDSRK-----------Q 149 (293)
Q Consensus 81 ~l~~~Nvv~il~lA~~~~~~~L~~~c~~~I~~nf~~v~~se~f~~L~~~~p~l~~ell~~ll~~d~~~-----------~ 149 (293)
.|+.+||++++.+|..|+++.|.+.|..||.+||.+|.++++|..| ..+.+..++.+|.+. .
T Consensus 104 ~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l-------~~~~l~~ll~~~~L~v~~E~~v~~av~ 176 (534)
T PHA03098 104 IIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYL-------SKNELIKILSDDKLNVSSEDVVLEIII 176 (534)
T ss_pred hCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcC-------CHHHHHHHhcCCCcCcCCHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999996 345666666665543 4
Q ss_pred HHHHHHHH
Q 039069 150 ERLRKVEE 157 (293)
Q Consensus 150 ~w~~~~~e 157 (293)
+|.+++.+
T Consensus 177 ~W~~~~~~ 184 (534)
T PHA03098 177 KWLTSKKN 184 (534)
T ss_pred HHHhcChh
Confidence 77766554
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.90 E-value=1.2e-23 Score=209.13 Aligned_cols=138 Identities=19% Similarity=0.316 Sum_probs=130.0
Q ss_pred CCCCHHHHHHhcCCCCcCCcCeEEcCCCCHHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHhhcCcchHHHHHHHHHHhc
Q 039069 1 SIASPVLGNILQQSKVKNGFKYIKIPGVPHEAVYAFFRFLYSSCFEEEDLKKFVLHLLVLSHSYLVPPLKRVCEYFLEQG 80 (293)
Q Consensus 1 Aa~S~yF~aMf~~~~~E~~~~~I~L~~vs~~~~~~~L~flYtg~i~~~~~~~~v~~LL~lA~~y~v~~Lk~~C~~~L~~~ 80 (293)
||+||||++||+++++|+.+.+|+|.+|++++++.+|+|+||+.+.++ .++|++||.+|+.||++.+.+.|.+||..
T Consensus 56 Aa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~--~~nVq~ll~aA~~lQi~~v~~~C~~fL~~- 132 (571)
T KOG4441|consen 56 AACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEIS--EDNVQELLEAASLLQIPEVVDACCEFLES- 132 (571)
T ss_pred HhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEec--hHhHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 689999999999999999999999999999999999999999999766 89999999999999999999999999999
Q ss_pred CCChHhHHHHHHHhhhCChHHHHHHHHHHHHHhHHHHhcccccchhhhcChHHHHHHHHHhhchHHHH
Q 039069 81 GLTKENVIDVLQLARNCDAPRLSLICVRMVVKDFKAITSTEGWKIMKRANPALEQELVESVVDEDSRK 148 (293)
Q Consensus 81 ~l~~~Nvv~il~lA~~~~~~~L~~~c~~~I~~nf~~v~~se~f~~L~~~~p~l~~ell~~ll~~d~~~ 148 (293)
.|+++||+.+..+|+.|++.+|...+..||.+||.+|..+++|..| ..+.+..++.+|.++
T Consensus 133 ~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L-------~~~~l~~ll~~d~l~ 193 (571)
T KOG4441|consen 133 QLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLL-------SLEELIGLLSSDDLN 193 (571)
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCC-------CHHHHHhhccccCCC
Confidence 6999999999999999999999999999999999999999999995 567777777777665
No 6
>smart00551 ZnF_TAZ TAZ zinc finger, present in p300 and CBP.
Probab=99.85 E-value=3e-21 Score=142.87 Aligned_cols=76 Identities=39% Similarity=0.921 Sum_probs=70.4
Q ss_pred HHHHhHHHHHHHHHHHhhcCCcccCCCcccccCCCCCCCccchhhHHHHHHHHhhcccc--CCCCCcchHHHHHHHHHHH
Q 039069 159 KVYLQLHEAMEALLHICRDGCRTIGPRDKVLKGSQVACNFPACKGLEALVRHFSNCKTR--VPGGCVHCKRMWQLLELHS 236 (293)
Q Consensus 159 ~vy~~L~~~m~lL~h~~~~~c~~~~~~~~~~~~~~~~c~~~~c~~~~~l~~h~~~c~~r--~~~gC~~C~~~~~l~~~ha 236 (293)
.+|.++++||.+|+||+. |+.+| ++|.+++|.+||.|++|+++|+.| ..|||..||+||+ |+
T Consensus 2 ~~~~~lq~~l~~L~Ha~~--C~~~~----------~~C~~~~C~~~k~L~~H~~~C~~~~C~~~~C~~ck~~~~----H~ 65 (79)
T smart00551 2 TRYKQLQRWLELLVHARR--CKARE----------AKCQYPNCKTMKKLLRHMDSCKVRKCKYGYCASCKQLWQ----HS 65 (79)
T ss_pred cHHHHHHHHHHHHHHHHh--CCCCC----------CCCCCchhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH----HH
Confidence 478899999999999988 98654 489999999999999999999999 8899999999999 99
Q ss_pred hcCCCCCCCCCCCCh
Q 039069 237 RMCNEPDLCKVPLCR 251 (293)
Q Consensus 237 ~~c~~~~~c~vp~c~ 251 (293)
++|++.+ |+||+|+
T Consensus 66 k~C~~~~-C~Vc~c~ 79 (79)
T smart00551 66 KHCKDSN-CPVCKCV 79 (79)
T ss_pred HhcCCCC-CCCCCCC
Confidence 9999986 9999995
No 7
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.79 E-value=1.4e-19 Score=167.10 Aligned_cols=139 Identities=17% Similarity=0.272 Sum_probs=126.8
Q ss_pred CCCCHHHHHHhcCCCCcCCcCeEEcCCCCHHHHHHHHhhhhCCCCCcc-hHHHHHHHHHHHHhhcCcchHHHHHHHHHHh
Q 039069 1 SIASPVLGNILQQSKVKNGFKYIKIPGVPHEAVYAFFRFLYSSCFEEE-DLKKFVLHLLVLSHSYLVPPLKRVCEYFLEQ 79 (293)
Q Consensus 1 Aa~S~yF~aMf~~~~~E~~~~~I~L~~vs~~~~~~~L~flYtg~i~~~-~~~~~v~~LL~lA~~y~v~~Lk~~C~~~L~~ 79 (293)
|++|+||++|++++|.|+.+..|+|++-..++|..+|+|||||++... ..++..++.|.+|++|++++|...-.+|+.+
T Consensus 64 AaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~ 143 (620)
T KOG4350|consen 64 AARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKE 143 (620)
T ss_pred HHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999653 2257889999999999999999999999999
Q ss_pred cCCChHhHHHHHHHhhhCChHHHHHHHHHHHHHhHHHHhcccccchhhhcChHHHHHHHHHhhchHHH
Q 039069 80 GGLTKENVIDVLQLARNCDAPRLSLICVRMVVKDFKAITSTEGWKIMKRANPALEQELVESVVDEDSR 147 (293)
Q Consensus 80 ~~l~~~Nvv~il~lA~~~~~~~L~~~c~~~I~~nf~~v~~se~f~~L~~~~p~l~~ell~~ll~~d~~ 147 (293)
.+..+|++.++..|..|+.++|.+.|+.|...|..+++.+++|..| ..+-|+.++.+|.-
T Consensus 144 -iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~L-------Sk~sL~e~l~RDsF 203 (620)
T KOG4350|consen 144 -ILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRL-------SKDSLKELLARDSF 203 (620)
T ss_pred -HHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhh-------hHHHHHHHHhhhcc
Confidence 7999999999999999999999999999999999999999999985 55666666666643
No 8
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.77 E-value=2.9e-18 Score=158.22 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=140.8
Q ss_pred CCCHHHHHHhcCCCCcCCcCeEEc----CCCCHHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHhhcCcchHHHHHHHHH
Q 039069 2 IASPVLGNILQQSKVKNGFKYIKI----PGVPHEAVYAFFRFLYSSCFEEEDLKKFVLHLLVLSHSYLVPPLKRVCEYFL 77 (293)
Q Consensus 2 a~S~yF~aMf~~~~~E~~~~~I~L----~~vs~~~~~~~L~flYtg~i~~~~~~~~v~~LL~lA~~y~v~~Lk~~C~~~L 77 (293)
.+|+||++||+|.|+|+++..|.| +.|+.+++..++.-+|.++++++ .+-+..+|++|+.+++++|.+.|.+.|
T Consensus 89 ~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~--l~dv~gvlAaA~~lqldgl~qrC~evM 166 (488)
T KOG4682|consen 89 FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIK--LSDVVGVLAAACLLQLDGLIQRCGEVM 166 (488)
T ss_pred eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheecc--HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 379999999999999999887666 56999999999999999999877 778999999999999999999999999
Q ss_pred HhcCCChHhHHHHHHHhhhCChHHHHHHHHHHHHHhHHHHhcccccchhhhcChHHHHHHHHH--hhchHHHHHHHHHHH
Q 039069 78 EQGGLTKENVIDVLQLARNCDAPRLSLICVRMVVKDFKAITSTEGWKIMKRANPALEQELVES--VVDEDSRKQERLRKV 155 (293)
Q Consensus 78 ~~~~l~~~Nvv~il~lA~~~~~~~L~~~c~~~I~~nf~~v~~se~f~~L~~~~p~l~~ell~~--ll~~d~~~~~w~~~~ 155 (293)
++ .|+++|++.++..|..|+.+.+++.|++|+..|+..+.... .|.+.+.+|+..++.+ ++. .+
T Consensus 167 ie-~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q---~l~ei~~~Lm~~ll~SpnLfv----------mq 232 (488)
T KOG4682|consen 167 IE-TLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQ---LLKEISINLMKQLLGSPNLFV----------MQ 232 (488)
T ss_pred HH-hcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHH---HHHhcCHHHHHHHhCCCCeEE----------EE
Confidence 99 69999999999999999999999999999999999998776 5666566666666655 333 55
Q ss_pred HHHHHHHhHHHHHHHHHHHhh
Q 039069 156 EERKVYLQLHEAMEALLHICR 176 (293)
Q Consensus 156 ~e~~vy~~L~~~m~lL~h~~~ 176 (293)
.|.++|..+..||.+.+++-+
T Consensus 233 ~EfdLyttlk~WmfLql~pd~ 253 (488)
T KOG4682|consen 233 VEFDLYTTLKKWMFLQLVPDW 253 (488)
T ss_pred eeehHHHHHHHHHHhhhcccc
Confidence 689999999999999999944
No 9
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.66 E-value=1e-15 Score=144.34 Aligned_cols=141 Identities=28% Similarity=0.446 Sum_probs=125.8
Q ss_pred CCCCHHHHHHhcCCCCcCCcCeEEcCCCCHHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHhhcCcchHHHHHHHHHHhc
Q 039069 1 SIASPVLGNILQQSKVKNGFKYIKIPGVPHEAVYAFFRFLYSSCFEEEDLKKFVLHLLVLSHSYLVPPLKRVCEYFLEQG 80 (293)
Q Consensus 1 Aa~S~yF~aMf~~~~~E~~~~~I~L~~vs~~~~~~~L~flYtg~i~~~~~~~~v~~LL~lA~~y~v~~Lk~~C~~~L~~~ 80 (293)
|..|++|.+||++++.++...+|+++||.+.+|..+|+|||++.+... .++++.+|++|++|.++.|.+.|.+||..
T Consensus 139 a~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~--~dtvi~tl~~AkKY~VpaLer~CVkflr~- 215 (521)
T KOG2075|consen 139 ADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLA--ADTVITTLYAAKKYLVPALERQCVKFLRK- 215 (521)
T ss_pred hcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHH-
Confidence 567999999999999998778999999999999999999999988655 79999999999999999999999999999
Q ss_pred CCChHhHHHHHHH-hhhCChHHHHHHHHHHHHHhHHHHhcccccchhhhcChHHHHHHHHHhhchHHHHH
Q 039069 81 GLTKENVIDVLQL-ARNCDAPRLSLICVRMVVKDFKAITSTEGWKIMKRANPALEQELVESVVDEDSRKQ 149 (293)
Q Consensus 81 ~l~~~Nvv~il~l-A~~~~~~~L~~~c~~~I~~nf~~v~~se~f~~L~~~~p~l~~ell~~ll~~d~~~~ 149 (293)
.+.+.|.+..+.- |..++-++|...|++-|..+|+.....|+|.+... ..+.+.+++.+++++-
T Consensus 216 ~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did~-----~~dt~~evl~r~~l~~ 280 (521)
T KOG2075|consen 216 NLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDIDS-----TRDTYEEVLRRDTLEA 280 (521)
T ss_pred hcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehhh-----HHHHHHHHHhhcccch
Confidence 5877777655554 99999999999999999999999999999998643 2777888888887763
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.40 E-value=7.1e-13 Score=112.73 Aligned_cols=135 Identities=17% Similarity=0.294 Sum_probs=108.9
Q ss_pred CCCCHHHHHHhcCCCCcCCcCeEEcCCCCHHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHhhcCcchHHHHHHHHHHhc
Q 039069 1 SIASPVLGNILQQSKVKNGFKYIKIPGVPHEAVYAFFRFLYSSCFEEEDLKKFVLHLLVLSHSYLVPPLKRVCEYFLEQG 80 (293)
Q Consensus 1 Aa~S~yF~aMf~~~~~E~~~~~I~L~~vs~~~~~~~L~flYtg~i~~~~~~~~v~~LL~lA~~y~v~~Lk~~C~~~L~~~ 80 (293)
||+|++++ |.++-.|. ..+..+.|+++++|...++||||+.++....+++..++..+|..|+++.|++.|++-+..
T Consensus 89 AARsD~Wk--faN~~dek-se~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a- 164 (280)
T KOG4591|consen 89 AARSDFWK--FANGGDEK-SEELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGA- 164 (280)
T ss_pred hhhcchhh--hccCCCcc-hhhhcccccCHHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 56777663 33222222 245677899999999999999999998776689999999999999999999999999999
Q ss_pred CCChHhHHHHHHHhhhCChHHHHHHHHHHHHHhHHHHhcccccchhhhcChHHHHHHHHHhhchHHH
Q 039069 81 GLTKENVIDVLQLARNCDAPRLSLICVRMVVKDFKAITSTEGWKIMKRANPALEQELVESVVDEDSR 147 (293)
Q Consensus 81 ~l~~~Nvv~il~lA~~~~~~~L~~~c~~~I~~nf~~v~~se~f~~L~~~~p~l~~ell~~ll~~d~~ 147 (293)
.++++||+.++++|+..++..|...|...|+.++..+ ...+|..| .| .+|-.+++..+.
T Consensus 165 ~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL-~~a~FaqM---s~----aLLYklId~kTe 223 (280)
T KOG4591|consen 165 LLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDL-GKADFAQM---SA----ALLYKLIDGKTE 223 (280)
T ss_pred HhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-ChHHHHhc---cH----HHHHHHHcCCCc
Confidence 6999999999999999999999999999999999875 34556664 33 444455554443
No 11
>PF02135 zf-TAZ: TAZ zinc finger; InterPro: IPR000197 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. TAZ (Transcription Adaptor putative Zinc finger) domains are zinc-containing domains found in the homologous transcriptional co-activators CREB-binding protein (CBP) and the P300. CBP and P300 are histone acetyltransferases (2.3.1.48 from EC) that catalyse the reversible acetylation of all four histones in nucleosomes, acting to regulate transcription via chromatin remodelling. These large nuclear proteins interact with numerous transcription factors and viral oncoproteins, including p53 tumour suppressor protein, E1A oncoprotein, MyoD, and GATA-1, and are involved in cell growth, differentiation and apoptosis []. Both CBP and P300 have two copies of the TAZ domain, one in the N-terminal region, the other in the C-terminal region. The TAZ1 domain of CBP and P300 forms a complex with CITED2 (CBP/P300-interacting transactivator with ED-rich tail), inhibiting the activity of the hypoxia inducible factor (HIF-1alpha) and thereby attenuating the cellular response to low tissue oxygen concentration []. Adaptation to hypoxia is mediated by transactivation of hypoxia-responsive genes by hypoxia-inducible factor-1 (HIF-1) in complex with the CBP and p300 transcriptional coactivators []. The TAZ domain adopts an all-alpha fold with zinc-binding sites in the loops connecting the helices. The TAZ1 domain in P300 and the TAZ2 (CH3) domain in CBP have each been shown to have four amphipathic helices, organised by three zinc-binding clusters with HCCC-type coordination [, , ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003712 transcription cofactor activity, 0004402 histone acetyltransferase activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1P4Q_B 1L3E_B 2KJE_A 1WO3_A 1WO4_A 1WO5_A 1LIQ_A 3P57_P 2K8F_A 3IO2_A ....
Probab=99.40 E-value=1e-13 Score=102.15 Aligned_cols=72 Identities=38% Similarity=0.905 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHhhcCCcccCCCcccccCCCCCCCccchhhHHHHHHHHhhccccC--CCCCcchHHHHHHHHHHHhcCC
Q 039069 163 QLHEAMEALLHICRDGCRTIGPRDKVLKGSQVACNFPACKGLEALVRHFSNCKTRV--PGGCVHCKRMWQLLELHSRMCN 240 (293)
Q Consensus 163 ~L~~~m~lL~h~~~~~c~~~~~~~~~~~~~~~~c~~~~c~~~~~l~~h~~~c~~r~--~~gC~~C~~~~~l~~~ha~~c~ 240 (293)
++++++.+|.|+.. |+..+ .++|.++.|.+||.|+.|+.+|..+. .++|..||++|+ |++.|+
T Consensus 2 ~~~~~L~~L~Ha~~--C~~~~---------~~~C~~~~C~~~K~ll~H~~~C~~~~C~~~~C~~~k~ll~----H~~~C~ 66 (75)
T PF02135_consen 2 QLQRWLELLLHASS--CRDPE---------HPNCSLPHCRKMKKLLKHMRTCRNRDCPVPGCQSCKRLLS----HARSCK 66 (75)
T ss_dssp HHHHHHHHHHHHHH--HHHHH---------CTT-SSTTHHHHHHHHHHHCCSSSCCSSCCTHHHHHHHHH----HHHHHT
T ss_pred HHHHHHHHHHHHhH--CcCCC---------CCCCCCcccHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH----HHhcCC
Confidence 57899999999965 99533 25899999999999999999999887 679999999998 999999
Q ss_pred CCCCCCCCCC
Q 039069 241 EPDLCKVPLC 250 (293)
Q Consensus 241 ~~~~c~vp~c 250 (293)
+.+ |+||+|
T Consensus 67 ~~~-C~vc~C 75 (75)
T PF02135_consen 67 DSD-CPVCFC 75 (75)
T ss_dssp STT-SSSHHH
T ss_pred CCC-CCCCCC
Confidence 986 999987
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.40 E-value=6.8e-13 Score=131.73 Aligned_cols=124 Identities=17% Similarity=0.266 Sum_probs=105.2
Q ss_pred CCCCHHHHHHhcCCCCcCCcCeEEcCCCCHHHHHHHHhhhhC-CCCCc---chHHHHHHHHHHHHhhcCcchHHHHHHHH
Q 039069 1 SIASPVLGNILQQSKVKNGFKYIKIPGVPHEAVYAFFRFLYS-SCFEE---EDLKKFVLHLLVLSHSYLVPPLKRVCEYF 76 (293)
Q Consensus 1 Aa~S~yF~aMf~~~~~E~~~~~I~L~~vs~~~~~~~L~flYt-g~i~~---~~~~~~v~~LL~lA~~y~v~~Lk~~C~~~ 76 (293)
.|+++||..||...|.|++.-.+...-+..+.++.+|+|+|+ ++... ....+++.++|..||.|.+.+|+..|+..
T Consensus 731 ~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ 810 (1267)
T KOG0783|consen 731 SARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILELKSICEQS 810 (1267)
T ss_pred eeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999875454444559999999999995 43321 11257899999999999999999999999
Q ss_pred HHhcCCChHhHHHHHHHhhhCChHHHHHHHHHHHHHhHHHHhcccccch
Q 039069 77 LEQGGLTKENVIDVLQLARNCDAPRLSLICVRMVVKDFKAITSTEGWKI 125 (293)
Q Consensus 77 L~~~~l~~~Nvv~il~lA~~~~~~~L~~~c~~~I~~nf~~v~~se~f~~ 125 (293)
|.+ .|+..|+..++++|..|++..|+..|++||..|+..+++.....+
T Consensus 811 ll~-kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~ 858 (1267)
T KOG0783|consen 811 LLR-KLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISE 858 (1267)
T ss_pred HHh-HhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhh
Confidence 999 799999999999999999999999999999999998876544333
No 13
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.30 E-value=1.8e-12 Score=101.30 Aligned_cols=78 Identities=31% Similarity=0.508 Sum_probs=69.1
Q ss_pred CCCCHHHHHHhcCC-CCcCCcCeEEcCCCCHHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHhhcCcchHHHHHHHHHHh
Q 039069 1 SIASPVLGNILQQS-KVKNGFKYIKIPGVPHEAVYAFFRFLYSSCFEEEDLKKFVLHLLVLSHSYLVPPLKRVCEYFLEQ 79 (293)
Q Consensus 1 Aa~S~yF~aMf~~~-~~E~~~~~I~L~~vs~~~~~~~L~flYtg~i~~~~~~~~v~~LL~lA~~y~v~~Lk~~C~~~L~~ 79 (293)
+++||||+.||.++ +.+.+..+|.++++++++|..+++|+|+|.+..+ ..+++.+++.+|++|+++.|++.|+++|.+
T Consensus 31 ~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~-~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 31 AARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEIN-SDENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp HHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE--TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred hccchhhhhcccccccccccccccccccccccccccccccccCCcccCC-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 46899999999888 6666666899999999999999999999988654 257799999999999999999999999987
No 14
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.28 E-value=7.7e-12 Score=92.63 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=65.3
Q ss_pred CCCCHHHHHHhcCCCCcCCcCeEEcCCCCHHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHhhcCcchHHHHHH
Q 039069 1 SIASPVLGNILQQSKVKNGFKYIKIPGVPHEAVYAFFRFLYSSCFEEEDLKKFVLHLLVLSHSYLVPPLKRVCE 74 (293)
Q Consensus 1 Aa~S~yF~aMf~~~~~E~~~~~I~L~~vs~~~~~~~L~flYtg~i~~~~~~~~v~~LL~lA~~y~v~~Lk~~C~ 74 (293)
+++|+||+.||.+++.++....|.+.++++++|+.+++|+|++.+..+ ..++.+++.+|++|+++.|++.|+
T Consensus 19 ~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~--~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 19 AACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLP--EENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred hhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecC--HHHHHHHHHHHHHHCcHHHHhhhC
Confidence 467999999999988877778899999999999999999999998666 568999999999999999999884
No 15
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.37 E-value=1.6e-06 Score=80.55 Aligned_cols=122 Identities=12% Similarity=0.104 Sum_probs=98.4
Q ss_pred CCHHHHHHhcCCCCcCC-cCe---EEcCCCCHHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHhhcCcch---HHHHHHH
Q 039069 3 ASPVLGNILQQSKVKNG-FKY---IKIPGVPHEAVYAFFRFLYSSCFEEEDLKKFVLHLLVLSHSYLVPP---LKRVCEY 75 (293)
Q Consensus 3 ~S~yF~aMf~~~~~E~~-~~~---I~L~~vs~~~~~~~L~flYtg~i~~~~~~~~v~~LL~lA~~y~v~~---Lk~~C~~ 75 (293)
+.+||+.||.|++.|++ +.+ ..++.....+++..++|+|++..++. .+.+.+++.+|+++.+.. |+.+...
T Consensus 312 R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~--~~~A~dvll~ad~lal~~dr~Lkt~as~ 389 (516)
T KOG0511|consen 312 RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDII--FDVASDVLLFADKLALADDRLLKTAASA 389 (516)
T ss_pred HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccch--HHHHhhHHHHhhHhhhhhhhhhhhhhhH
Confidence 46899999999999955 333 44566678899999999999988544 788999999999997762 5555544
Q ss_pred HHHhc--CCChHhHHHHHHHhhhCChHHHHHHHHHHHHHhHHHHhcccccchh
Q 039069 76 FLEQG--GLTKENVIDVLQLARNCDAPRLSLICVRMVVKDFKAITSTEGWKIM 126 (293)
Q Consensus 76 ~L~~~--~l~~~Nvv~il~lA~~~~~~~L~~~c~~~I~~nf~~v~~se~f~~L 126 (293)
.|.+. .++.-||.+++.++...+.++|...+..|+..|+..+...|++...
T Consensus 390 ~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~ 442 (516)
T KOG0511|consen 390 EITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSS 442 (516)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHH
Confidence 44441 2567789999999999999999999999999999999999988753
No 16
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.02 E-value=6.7e-06 Score=75.58 Aligned_cols=125 Identities=18% Similarity=0.078 Sum_probs=103.8
Q ss_pred CCCCHHHHHHhcCCCCcCCcCeEEcCCCCHHHHHHHHhhhhCCCCCcchHHHHHH---HHHHHHhhcCcchHHHHHHHHH
Q 039069 1 SIASPVLGNILQQSKVKNGFKYIKIPGVPHEAVYAFFRFLYSSCFEEEDLKKFVL---HLLVLSHSYLVPPLKRVCEYFL 77 (293)
Q Consensus 1 Aa~S~yF~aMf~~~~~E~~~~~I~L~~vs~~~~~~~L~flYtg~i~~~~~~~~v~---~LL~lA~~y~v~~Lk~~C~~~L 77 (293)
+|+|++|+.|+.....+.....+.+.+.+++.++++..|.|+..-. .+.+.+. .+++.+..|..+.|+..|...+
T Consensus 120 ~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~--~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l 197 (297)
T KOG1987|consen 120 VARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQV--SSVERIFEKHPDLAAAFKYKNRHLKLACMPVL 197 (297)
T ss_pred EeeecceeeecccccchhccccccccccchhhHhhhceEEEeccch--HHHHHhhcCChhhhhccccccHHHHHHHHHHH
Confidence 4789999999988876666667789999999999999999995432 2234443 7889999999999999999999
Q ss_pred HhcCCChHhHHHHHHHhhhCChHHHHHHHHHHHHH--hHHHHhcccccchhhh
Q 039069 78 EQGGLTKENVIDVLQLARNCDAPRLSLICVRMVVK--DFKAITSTEGWKIMKR 128 (293)
Q Consensus 78 ~~~~l~~~Nvv~il~lA~~~~~~~L~~~c~~~I~~--nf~~v~~se~f~~L~~ 128 (293)
.. .+...|+..+++.+..++...+...+..++.. +++.+....++....+
T Consensus 198 ~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~~k~ 249 (297)
T KOG1987|consen 198 LS-LIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVKEKK 249 (297)
T ss_pred HH-HHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHHHhh
Confidence 99 59999999999999999999999999999987 7777776555544333
No 17
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.98 E-value=1.3e-05 Score=61.58 Aligned_cols=55 Identities=15% Similarity=0.411 Sum_probs=46.0
Q ss_pred HHHHHHHhhhCChHHHHHHHHHHHHHhHHHHhcccccchhhhcChHHHHHHHHHhhchHHHH
Q 039069 87 VIDVLQLARNCDAPRLSLICVRMVVKDFKAITSTEGWKIMKRANPALEQELVESVVDEDSRK 148 (293)
Q Consensus 87 vv~il~lA~~~~~~~L~~~c~~~I~~nf~~v~~se~f~~L~~~~p~l~~ell~~ll~~d~~~ 148 (293)
|++++.+|..|+.++|...|.+||..||.++..+++|..| ..+.+..++.++...
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L-------~~~~l~~iL~~~~l~ 55 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLEL-------PFDQLIEILSSDDLN 55 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS--------HHHHHHHHHTSS--
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcC-------CHHHHHHHHhccccc
Confidence 7899999999999999999999999999999999999985 567777777766664
No 18
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=97.72 E-value=4.4e-05 Score=57.97 Aligned_cols=54 Identities=17% Similarity=0.280 Sum_probs=45.4
Q ss_pred HHHHHHHhhhCChHHHHHHHHHHHHHhHHHHhcccccchhhhcChHHHHHHHHHhhchHHH
Q 039069 87 VIDVLQLARNCDAPRLSLICVRMVVKDFKAITSTEGWKIMKRANPALEQELVESVVDEDSR 147 (293)
Q Consensus 87 vv~il~lA~~~~~~~L~~~c~~~I~~nf~~v~~se~f~~L~~~~p~l~~ell~~ll~~d~~ 147 (293)
|++++.+|..|+.+.|...|..||.+||..+.++++|..| ..+.+..++.+|..
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L-------~~~~l~~iL~~d~l 54 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLEL-------SLEQLLSLLSSDDL 54 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcC-------CHHHHHHHhCcccC
Confidence 4678999999999999999999999999999999999885 45555666666554
No 19
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.0014 Score=58.08 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=63.1
Q ss_pred CHHHHHHhcCCCC-c-CCcCeEEcCCCCHHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHhhcCcchHHHHHHHHHHh
Q 039069 4 SPVLGNILQQSKV-K-NGFKYIKIPGVPHEAVYAFFRFLYSSCFEEEDLKKFVLHLLVLSHSYLVPPLKRVCEYFLEQ 79 (293)
Q Consensus 4 S~yF~aMf~~~~~-E-~~~~~I~L~~vs~~~~~~~L~flYtg~i~~~~~~~~v~~LL~lA~~y~v~~Lk~~C~~~L~~ 79 (293)
..||++||..++. + ...+.|-|+ =||.-|..+|+||-.|.+...+....+.+|+.=|..|.++.|.+.|...+..
T Consensus 27 dg~fk~m~e~~i~~~~d~s~~IFID-RSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 27 DGFFKTMLETDIPVEKDESGCIFID-RSPKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSAIAR 103 (230)
T ss_pred hhHHHHHhhcCCccccCCcCcEEec-CChhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 3589999987763 2 233557774 5999999999999999888777788899999999999999999999998877
No 20
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=96.98 E-value=0.0006 Score=61.35 Aligned_cols=90 Identities=17% Similarity=0.181 Sum_probs=60.9
Q ss_pred CCCCHHHHHHhcCCCCcCC---------cCeEEcCC-CCHHHH-HHHHhhhhCCCCCcc---------------------
Q 039069 1 SIASPVLGNILQQSKVKNG---------FKYIKIPG-VPHEAV-YAFFRFLYSSCFEEE--------------------- 48 (293)
Q Consensus 1 Aa~S~yF~aMf~~~~~E~~---------~~~I~L~~-vs~~~~-~~~L~flYtg~i~~~--------------------- 48 (293)
||+|++|++++....+|.. .+.|.+.+ |=|.+| -.||+++||+.++..
T Consensus 271 aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitna 350 (401)
T KOG2838|consen 271 AARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNA 350 (401)
T ss_pred HhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcC
Confidence 6899999999964433221 23466654 444444 567899999987421
Q ss_pred -----hHHHHHHHHHHHHhhcCcchHHHHHHHHHHhcCCChHhHHHHH
Q 039069 49 -----DLKKFVLHLLVLSHSYLVPPLKRVCEYFLEQGGLTKENVIDVL 91 (293)
Q Consensus 49 -----~~~~~v~~LL~lA~~y~v~~Lk~~C~~~L~~~~l~~~Nvv~il 91 (293)
.....+++|+..|-+|.+..|.+.|++.+.. ....+|+...+
T Consensus 351 Gkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~-acaadlsn~cL 397 (401)
T KOG2838|consen 351 GKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRK-ACAADLSNGCL 397 (401)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhcccccc
Confidence 1123567788888888888888888888888 47777776554
No 21
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=96.41 E-value=0.011 Score=45.05 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=50.5
Q ss_pred CCCCHHHHHHhcCCC--CcCCcCeEEcCCCCHHHHHHHHhhh-----hCCC-CC---cchHHHHHHHHHHHHhhcC
Q 039069 1 SIASPVLGNILQQSK--VKNGFKYIKIPGVPHEAVYAFFRFL-----YSSC-FE---EEDLKKFVLHLLVLSHSYL 65 (293)
Q Consensus 1 Aa~S~yF~aMf~~~~--~E~~~~~I~L~~vs~~~~~~~L~fl-----Ytg~-i~---~~~~~~~v~~LL~lA~~y~ 65 (293)
|.-|+-.++||+|+. .|...++|.+.+++...++.+.+|+ |++. .+ .++..+.+++||.+|+.+.
T Consensus 36 AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 36 AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELLMAANYLE 111 (112)
T ss_pred hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHHHHhhhhc
Confidence 345888999999875 4556678999999999999999886 5544 11 2344789999999999875
No 22
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=95.72 E-value=0.022 Score=44.18 Aligned_cols=65 Identities=9% Similarity=0.132 Sum_probs=43.5
Q ss_pred CCCHHHHHHhcCCCCc-CCcCeEEcCCCCHHHHHHHHhhhhCCCCCc---------c--------hHHHHHHHHHHHHhh
Q 039069 2 IASPVLGNILQQSKVK-NGFKYIKIPGVPHEAVYAFFRFLYSSCFEE---------E--------DLKKFVLHLLVLSHS 63 (293)
Q Consensus 2 a~S~yF~aMf~~~~~E-~~~~~I~L~~vs~~~~~~~L~flYtg~i~~---------~--------~~~~~v~~LL~lA~~ 63 (293)
..|..++.|+.+.-.+ .....|+|++|+..+++.+++|++...-.. . ...+.+.+|+.+|++
T Consensus 22 ~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAny 101 (104)
T smart00512 22 RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAANY 101 (104)
T ss_pred HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3588999999653322 222589999999999999999998642210 0 112356677777776
Q ss_pred cCc
Q 039069 64 YLV 66 (293)
Q Consensus 64 y~v 66 (293)
++|
T Consensus 102 L~I 104 (104)
T smart00512 102 LDI 104 (104)
T ss_pred hCC
Confidence 654
No 23
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=95.69 E-value=0.016 Score=53.68 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=54.2
Q ss_pred HHHHHHhcCCCCcC-CcCeEEcC-CCCHHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHhhcCcchHHHHHHHHHHh
Q 039069 5 PVLGNILQQSKVKN-GFKYIKIP-GVPHEAVYAFFRFLYSSCFEEEDLKKFVLHLLVLSHSYLVPPLKRVCEYFLEQ 79 (293)
Q Consensus 5 ~yF~aMf~~~~~E~-~~~~I~L~-~vs~~~~~~~L~flYtg~i~~~~~~~~v~~LL~lA~~y~v~~Lk~~C~~~L~~ 79 (293)
.||+..+.....++ ....|.|. .-+-.+|+-+++|+....-..+ .++|..||.-|++++|++|.+.|..|+..
T Consensus 28 ~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~--~~NvvsIliSS~FL~M~~Lve~cl~y~~~ 102 (317)
T PF11822_consen 28 RYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLT--PSNVVSILISSEFLQMESLVEECLQYCHD 102 (317)
T ss_pred HHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCC--cCcEEEeEehhhhhccHHHHHHHHHHHHH
Confidence 59999995422111 22334443 4678899999999999655444 78899999999999999999999999877
No 24
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.1 Score=43.89 Aligned_cols=77 Identities=8% Similarity=0.041 Sum_probs=55.8
Q ss_pred CCHHHHHHhcCCCCcCCcCeEEcCCCCHHHHHHHHhhhhCCCCC---------------cc--------hHHHHHHHHHH
Q 039069 3 ASPVLGNILQQSKVKNGFKYIKIPGVPHEAVYAFFRFLYSSCFE---------------EE--------DLKKFVLHLLV 59 (293)
Q Consensus 3 ~S~yF~aMf~~~~~E~~~~~I~L~~vs~~~~~~~L~flYtg~i~---------------~~--------~~~~~v~~LL~ 59 (293)
.|..+.+++...--......|+|+.|+..+|..+|.|.|.-.-+ +. .....+++|+.
T Consensus 26 ~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk~d~~tLfdli~ 105 (162)
T KOG1724|consen 26 QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQGTLFDLIL 105 (162)
T ss_pred HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHHhcCHHHHHHHHH
Confidence 46666777743211112257999999999999999999984321 00 11347899999
Q ss_pred HHhhcCcchHHHHHHHHHHh
Q 039069 60 LSHSYLVPPLKRVCEYFLEQ 79 (293)
Q Consensus 60 lA~~y~v~~Lk~~C~~~L~~ 79 (293)
+|+++.|++|.+.|.+.+..
T Consensus 106 AAnyLdi~gLl~~~ck~va~ 125 (162)
T KOG1724|consen 106 AANYLDIKGLLDLTCKTVAN 125 (162)
T ss_pred HhhhcccHHHHHHHHHHHHH
Confidence 99999999999999988766
No 25
>PF02135 zf-TAZ: TAZ zinc finger; InterPro: IPR000197 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. TAZ (Transcription Adaptor putative Zinc finger) domains are zinc-containing domains found in the homologous transcriptional co-activators CREB-binding protein (CBP) and the P300. CBP and P300 are histone acetyltransferases (2.3.1.48 from EC) that catalyse the reversible acetylation of all four histones in nucleosomes, acting to regulate transcription via chromatin remodelling. These large nuclear proteins interact with numerous transcription factors and viral oncoproteins, including p53 tumour suppressor protein, E1A oncoprotein, MyoD, and GATA-1, and are involved in cell growth, differentiation and apoptosis []. Both CBP and P300 have two copies of the TAZ domain, one in the N-terminal region, the other in the C-terminal region. The TAZ1 domain of CBP and P300 forms a complex with CITED2 (CBP/P300-interacting transactivator with ED-rich tail), inhibiting the activity of the hypoxia inducible factor (HIF-1alpha) and thereby attenuating the cellular response to low tissue oxygen concentration []. Adaptation to hypoxia is mediated by transactivation of hypoxia-responsive genes by hypoxia-inducible factor-1 (HIF-1) in complex with the CBP and p300 transcriptional coactivators []. The TAZ domain adopts an all-alpha fold with zinc-binding sites in the loops connecting the helices. The TAZ1 domain in P300 and the TAZ2 (CH3) domain in CBP have each been shown to have four amphipathic helices, organised by three zinc-binding clusters with HCCC-type coordination [, , ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003712 transcription cofactor activity, 0004402 histone acetyltransferase activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1P4Q_B 1L3E_B 2KJE_A 1WO3_A 1WO4_A 1WO5_A 1LIQ_A 3P57_P 2K8F_A 3IO2_A ....
Probab=93.45 E-value=0.21 Score=36.28 Aligned_cols=46 Identities=28% Similarity=0.681 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhcCCcccCCCcccccCCCCCCCccchhhHHHHHHHHhhccccCCCCCcchH
Q 039069 164 LHEAMEALLHICRDGCRTIGPRDKVLKGSQVACNFPACKGLEALVRHFSNCKTRVPGGCVHCK 226 (293)
Q Consensus 164 L~~~m~lL~h~~~~~c~~~~~~~~~~~~~~~~c~~~~c~~~~~l~~h~~~c~~r~~~gC~~C~ 226 (293)
=.....++.|. ..|+. ..|.++.|...|.|+.|...|.. +.|++|.
T Consensus 29 C~~~K~ll~H~--~~C~~------------~~C~~~~C~~~k~ll~H~~~C~~---~~C~vc~ 74 (75)
T PF02135_consen 29 CRKMKKLLKHM--RTCRN------------RDCPVPGCQSCKRLLSHARSCKD---SDCPVCF 74 (75)
T ss_dssp HHHHHHHHHHH--CCSSS------------CCSSCCTHHHHHHHHHHHHHHTS---TTSSSHH
T ss_pred cHHHHHHHHHH--HHcCC------------CCCCCCCCHHHHHHHHHHhcCCC---CCCCCCC
Confidence 45667899999 66985 45999999999999999999974 3598884
No 26
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=93.26 E-value=0.033 Score=42.10 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=45.6
Q ss_pred HHHHHHhcCC---CCcCCcCeEEcCCCCHHHHHHHHhhhhC-CCCCcchHHHHHHHHHHHHhhcCcchH-HHHH
Q 039069 5 PVLGNILQQS---KVKNGFKYIKIPGVPHEAVYAFFRFLYS-SCFEEEDLKKFVLHLLVLSHSYLVPPL-KRVC 73 (293)
Q Consensus 5 ~yF~aMf~~~---~~E~~~~~I~L~~vs~~~~~~~L~flYt-g~i~~~~~~~~v~~LL~lA~~y~v~~L-k~~C 73 (293)
.+|..|+.+. ........+-| |=+|..|+.+|+|+.+ +.+.... ......++.-|..|+++.| ++.|
T Consensus 23 s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~-~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 23 SLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPD-EICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp STTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---T-TS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred ChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCC-chhHHHHHHHHHHcCCCccccCCC
Confidence 4677788654 33344566766 5699999999999999 5664321 3457788999999999998 6665
No 27
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=93.01 E-value=0.15 Score=35.70 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=30.3
Q ss_pred CCCHHHHHHhcCCCCcCCcCeEEcCCCCHHHHHHHHhhhhC
Q 039069 2 IASPVLGNILQQSKVKNGFKYIKIPGVPHEAVYAFFRFLYS 42 (293)
Q Consensus 2 a~S~yF~aMf~~~~~E~~~~~I~L~~vs~~~~~~~L~flYt 42 (293)
-.|..++.||.+...+.. .|.|++|+..+++.+++|++.
T Consensus 21 ~~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 21 KQSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp TTSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 469999999965332222 799999999999999999863
No 28
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=91.47 E-value=0.19 Score=45.64 Aligned_cols=67 Identities=21% Similarity=0.174 Sum_probs=44.2
Q ss_pred CCCCHHHHHHhcCCCCcCCc--CeEEcCCCCHHHHHHHHhhhhCCCCCcchHH-HHHHHHHHHHhhcCcc
Q 039069 1 SIASPVLGNILQQSKVKNGF--KYIKIPGVPHEAVYAFFRFLYSSCFEEEDLK-KFVLHLLVLSHSYLVP 67 (293)
Q Consensus 1 Aa~S~yF~aMf~~~~~E~~~--~~I~L~~vs~~~~~~~L~flYtg~i~~~~~~-~~v~~LL~lA~~y~v~ 67 (293)
|+++|+|+.+.+.+-.-... -.|..-+++.++|++||+|+|||....++.. +++.-|-.++.-|+.+
T Consensus 150 aaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn~diL~QL~edFG~~ 219 (401)
T KOG2838|consen 150 AARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQNSDILEQLCEDFGCF 219 (401)
T ss_pred HhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCchHHHHHHHHHhhCCc
Confidence 57899999998654321222 2467779999999999999999988655321 3343344445555443
No 29
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=91.04 E-value=0.31 Score=43.06 Aligned_cols=86 Identities=13% Similarity=0.123 Sum_probs=59.7
Q ss_pred HHHHHhcCC--CC-cCCcCeEEcCCCCHHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHhhcCcchHHHHHHHHHHh---
Q 039069 6 VLGNILQQS--KV-KNGFKYIKIPGVPHEAVYAFFRFLYSSCFEEEDLKKFVLHLLVLSHSYLVPPLKRVCEYFLEQ--- 79 (293)
Q Consensus 6 yF~aMf~~~--~~-E~~~~~I~L~~vs~~~~~~~L~flYtg~i~~~~~~~~v~~LL~lA~~y~v~~Lk~~C~~~L~~--- 79 (293)
-..+||.+. +- |+....+ +-|=+|.-|+.+|.|+-.|.+.... .-.+..+|..|++|+|-+|++.-++.=.+
T Consensus 35 MLa~MF~~~g~~~~~d~kGa~-lIDRsp~yFepIlNyLr~Gq~~~~s-~i~~lgvLeeArff~i~sL~~hle~~~~e~pe 112 (302)
T KOG1665|consen 35 MLAAMFSGRGAMCQEDKKGAV-LIDRSPKYFEPILNYLRDGQIPSLS-DIDCLGVLEEARFFQILSLKDHLEDSRKEVPE 112 (302)
T ss_pred HHHHHHccCCCccccccCceE-EEccCchhhHHHHHHHhcCceeecC-CccHHHHHHHhhHHhhHhHHhHHhhhccCCCc
Confidence 456888543 22 3333334 4467999999999999999885432 45588899999999999999998874222
Q ss_pred --cCCChHhHHHHHHH
Q 039069 80 --GGLTKENVIDVLQL 93 (293)
Q Consensus 80 --~~l~~~Nvv~il~l 93 (293)
..++...++.+++.
T Consensus 113 ~~~pltR~diik~iqT 128 (302)
T KOG1665|consen 113 VEAPLTRIDIIKCIQT 128 (302)
T ss_pred CCCCccHHHHHHHhhh
Confidence 02455566665555
No 30
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=90.74 E-value=0.23 Score=51.28 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=33.9
Q ss_pred CCCCHHHHHHhcCCCCcC--C----------cCeEEcCCCCHHHHHHHHhhhhCCCC
Q 039069 1 SIASPVLGNILQQSKVKN--G----------FKYIKIPGVPHEAVYAFFRFLYSSCF 45 (293)
Q Consensus 1 Aa~S~yF~aMf~~~~~E~--~----------~~~I~L~~vs~~~~~~~L~flYtg~i 45 (293)
+++|++|+.+|......+ . ...|.+++|+|..|+.+|+||||+..
T Consensus 578 ~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 578 CARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTL 634 (1267)
T ss_pred EeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccc
Confidence 478999999995433221 1 12466889999999999999999854
No 31
>smart00551 ZnF_TAZ TAZ zinc finger, present in p300 and CBP.
Probab=89.77 E-value=0.64 Score=34.37 Aligned_cols=45 Identities=29% Similarity=0.707 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhcCCcccCCCcccccCCCCCCCccchhhHHHHHHHHhhccccCCCCCcchH
Q 039069 165 HEAMEALLHICRDGCRTIGPRDKVLKGSQVACNFPACKGLEALVRHFSNCKTRVPGGCVHCK 226 (293)
Q Consensus 165 ~~~m~lL~h~~~~~c~~~~~~~~~~~~~~~~c~~~~c~~~~~l~~h~~~c~~r~~~gC~~C~ 226 (293)
...-.++.|. ..|+. ..|.++.|..-|.++.|...|.. .+|++|.
T Consensus 33 ~~~k~L~~H~--~~C~~------------~~C~~~~C~~ck~~~~H~k~C~~---~~C~Vc~ 77 (79)
T smart00551 33 KTMKKLLRHM--DSCKV------------RKCKYGYCASCKQLWQHSKHCKD---SNCPVCK 77 (79)
T ss_pred HHHHHHHHHH--HHcCC------------CCCCCCCCHHHHHHHHHHHhcCC---CCCCCCC
Confidence 5556788888 55996 58999999999999999999976 2488773
No 32
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=87.71 E-value=0.37 Score=44.75 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=45.2
Q ss_pred CCChHhHHHHHHHhhhCChHHHHHHHHHHHHHhHHHHhcccccchhhhcChHHHHHH
Q 039069 81 GLTKENVIDVLQLARNCDAPRLSLICVRMVVKDFKAITSTEGWKIMKRANPALEQEL 137 (293)
Q Consensus 81 ~l~~~Nvv~il~lA~~~~~~~L~~~c~~~I~~nf~~v~~se~f~~L~~~~p~l~~el 137 (293)
.++++||+.++.-+.....++|.+.|+.|+..|+.+|..++ -.|.-.+..|+..+
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~--~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASP--CNLNCLNDNLLTRL 125 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCC--CCcccCCHHHHHHH
Confidence 48999999999999999999999999999999999998876 33444444444443
No 33
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=85.35 E-value=1.5 Score=42.25 Aligned_cols=64 Identities=17% Similarity=0.126 Sum_probs=46.9
Q ss_pred HHHHHHhcCCCCcCCc--CeEEcCCCCHHHHHHHHhhhhCCCCCcchHHHHHHHHHH-HHhhcCcchHHH
Q 039069 5 PVLGNILQQSKVKNGF--KYIKIPGVPHEAVYAFFRFLYSSCFEEEDLKKFVLHLLV-LSHSYLVPPLKR 71 (293)
Q Consensus 5 ~yF~aMf~~~~~E~~~--~~I~L~~vs~~~~~~~L~flYtg~i~~~~~~~~v~~LL~-lA~~y~v~~Lk~ 71 (293)
.+|.++|.+.|.-... ..|-| |=+|+.|..+|+||-||.++.. ..+...++. =|.+|++.+|.+
T Consensus 36 SffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~--g~~~~~llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 36 SFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDAS--GVFPERLLHDEAMFYGLTPLLR 102 (465)
T ss_pred hHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCc--cCchhhhhhhhhhhcCcHHHHH
Confidence 4899999877643222 22544 5699999999999999999764 333444444 899999999776
No 34
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=83.92 E-value=1.5 Score=32.12 Aligned_cols=48 Identities=10% Similarity=0.222 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHHhcCC---ChHhHHHHHHHhhhCCh
Q 039069 51 KKFVLHLLVLSHSYLVPPLKRVCEYFLEQGGL---TKENVIDVLQLARNCDA 99 (293)
Q Consensus 51 ~~~v~~LL~lA~~y~v~~Lk~~C~~~L~~~~l---~~~Nvv~il~lA~~~~~ 99 (293)
.+.+.+|+.+|+.++|+.|.+.|...+.. .+ +++-+-.++.+...+..
T Consensus 13 ~~~L~~l~~AA~yL~I~~L~~~~~~~iA~-~i~gks~eeir~~fgi~~d~t~ 63 (78)
T PF01466_consen 13 NDELFDLLNAANYLDIKGLLDLCCKYIAN-MIKGKSPEEIRKYFGIENDLTP 63 (78)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHH-HHTTS-HHHHHHHHT---TSSH
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHH-HhcCCCHHHHHHHcCCCCCCCH
Confidence 56789999999999999999999988776 34 55555555555555443
No 35
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=83.64 E-value=1.6 Score=42.62 Aligned_cols=58 Identities=24% Similarity=0.381 Sum_probs=45.6
Q ss_pred CCChHhHHHHHHHhhhCChHHHHHHHHHHHHHhHHHHhcccccchhhh-----cChHHHHHHHHHh
Q 039069 81 GLTKENVIDVLQLARNCDAPRLSLICVRMVVKDFKAITSTEGWKIMKR-----ANPALEQELVESV 141 (293)
Q Consensus 81 ~l~~~Nvv~il~lA~~~~~~~L~~~c~~~I~~nf~~v~~se~f~~L~~-----~~p~l~~ell~~l 141 (293)
.+.++|++.++.+|.+|..+.|...|.+||..|... ..+|..|.+ ..|+|+..+++.+
T Consensus 184 ~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~---~naf~~L~q~A~lf~ep~Li~~c~e~i 246 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMA---DNAFLELFQRAKLFDEPSLISICLEVI 246 (521)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhhcCHHHHHHHHHHh
Confidence 368999999999999999999999999999987644 344666655 4577777666553
No 36
>PHA03098 kelch-like protein; Provisional
Probab=78.47 E-value=3.9 Score=40.53 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=30.6
Q ss_pred CChHhHHHHHHHhhhCChHHHHHHHHHHHHHhH
Q 039069 82 LTKENVIDVLQLARNCDAPRLSLICVRMVVKDF 114 (293)
Q Consensus 82 l~~~Nvv~il~lA~~~~~~~L~~~c~~~I~~nf 114 (293)
++.+|+.+++.+|..+..+.|...|.+|+.+++
T Consensus 73 i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l 105 (534)
T PHA03098 73 ITSNNVKDILSIANYLIIDFLINLCINYIIKII 105 (534)
T ss_pred EcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 689999999999999999999999999998653
No 37
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=75.65 E-value=3.9 Score=30.92 Aligned_cols=30 Identities=30% Similarity=0.550 Sum_probs=28.6
Q ss_pred hHhHHHHHHHhhhCChHHHHHHHHHHHHHh
Q 039069 84 KENVIDVLQLARNCDAPRLSLICVRMVVKD 113 (293)
Q Consensus 84 ~~Nvv~il~lA~~~~~~~L~~~c~~~I~~n 113 (293)
.+++.+++.+|..++.+.|...|..++.+|
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 889999999999999999999999999876
No 38
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=73.43 E-value=15 Score=27.38 Aligned_cols=61 Identities=16% Similarity=0.282 Sum_probs=39.8
Q ss_pred HHHHHHHhhcCcchHHHHHHHHHHhc-----------CCChHhHHHHHHHhhh--CChHHHHHHHHHHHHHhHH
Q 039069 55 LHLLVLSHSYLVPPLKRVCEYFLEQG-----------GLTKENVIDVLQLARN--CDAPRLSLICVRMVVKDFK 115 (293)
Q Consensus 55 ~~LL~lA~~y~v~~Lk~~C~~~L~~~-----------~l~~~Nvv~il~lA~~--~~~~~L~~~c~~~I~~nf~ 115 (293)
.+++.+|..|+.+.|.+.|.+++..+ .++.+....++.--.. .+-.++.+.+.+|+..|..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHH
Confidence 46889999999999999999999873 1234444444443222 2334677777777776654
No 39
>PHA02713 hypothetical protein; Provisional
Probab=62.44 E-value=11 Score=37.87 Aligned_cols=45 Identities=22% Similarity=0.183 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCChHhHHHHHHHhhhCChHHHHHHHHHHHHHhHH
Q 039069 71 RVCEYFLEQGGLTKENVIDVLQLARNCDAPRLSLICVRMVVKDFK 115 (293)
Q Consensus 71 ~~C~~~L~~~~l~~~Nvv~il~lA~~~~~~~L~~~c~~~I~~nf~ 115 (293)
+...+|+=.+.|+.+|+.+++..|..+..+.|++.|.+|+..++.
T Consensus 80 ~~ll~y~Yt~~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~ 124 (557)
T PHA02713 80 KNIVQYLYNRHISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTN 124 (557)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCC
Confidence 344556655569999999999999999999999999999986543
No 40
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=59.08 E-value=29 Score=28.20 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=43.9
Q ss_pred eEEcCCCCHHHHHHHHhhhhCC--CCCc-------------c--------hHHHHHHHHHHHHhhcCcchHHHHHHHHHH
Q 039069 22 YIKIPGVPHEAVYAFFRFLYSS--CFEE-------------E--------DLKKFVLHLLVLSHSYLVPPLKRVCEYFLE 78 (293)
Q Consensus 22 ~I~L~~vs~~~~~~~L~flYtg--~i~~-------------~--------~~~~~v~~LL~lA~~y~v~~Lk~~C~~~L~ 78 (293)
.|..++|...+|..++.|+-.. .... + ...++..++..+|+++.++.|.+.|++.+.
T Consensus 40 p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKiva 119 (158)
T COG5201 40 PIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVA 119 (158)
T ss_pred CCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 3677899999999999997543 2211 0 113567888899999999999999998876
Q ss_pred h
Q 039069 79 Q 79 (293)
Q Consensus 79 ~ 79 (293)
.
T Consensus 120 e 120 (158)
T COG5201 120 E 120 (158)
T ss_pred H
Confidence 6
No 41
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=54.06 E-value=41 Score=24.50 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=22.4
Q ss_pred HHHHHHHhhcCcchHHHHHHHHHHhc
Q 039069 55 LHLLVLSHSYLVPPLKRVCEYFLEQG 80 (293)
Q Consensus 55 ~~LL~lA~~y~v~~Lk~~C~~~L~~~ 80 (293)
.+++.+|+.|+.+.|.+.|.+++..+
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 35778899999999999999998873
No 42
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=52.98 E-value=25 Score=26.63 Aligned_cols=15 Identities=40% Similarity=1.057 Sum_probs=12.4
Q ss_pred cccCCCCCcchHHHH
Q 039069 215 KTRVPGGCVHCKRMW 229 (293)
Q Consensus 215 ~~r~~~gC~~C~~~~ 229 (293)
+++.|..|+.||-.|
T Consensus 72 ~ik~pSRCP~CKSE~ 86 (97)
T COG3357 72 KIKKPSRCPKCKSEW 86 (97)
T ss_pred ccCCcccCCcchhhc
Confidence 466788999999877
No 43
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=46.59 E-value=81 Score=25.62 Aligned_cols=76 Identities=18% Similarity=0.283 Sum_probs=46.3
Q ss_pred EEcCC--CCHHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHhhcCcchHHHHHHHHHHhcCCChHhHHHHHHHhhhCChH
Q 039069 23 IKIPG--VPHEAVYAFFRFLYSSCFEEEDLKKFVLHLLVLSHSYLVPPLKRVCEYFLEQGGLTKENVIDVLQLARNCDAP 100 (293)
Q Consensus 23 I~L~~--vs~~~~~~~L~flYtg~i~~~~~~~~v~~LL~lA~~y~v~~Lk~~C~~~L~~~~l~~~Nvv~il~lA~~~~~~ 100 (293)
+.+.+ ++++.|..++..+..|.++.. .+.+++ ...+.. .-+++..+.-..+....+..
T Consensus 33 ~~~~~~~i~~~~l~~li~l~~~~~Is~~----~ak~ll---------------~~~~~~-~~~~~~ii~~~~l~~i~d~~ 92 (148)
T PF02637_consen 33 LDIEDSPISPEHLAELINLLEDGKISKK----SAKELL---------------RELLEN-GKSPEEIIEENGLWQISDEE 92 (148)
T ss_dssp --TTTSSSTHHHHHHHHHHHHTTSSGHH----HHHHHH---------------HHHHHH-TS-HHHHHHHTT---B--CC
T ss_pred CChhhcCCCHHHHHHHHHHHHcCCCCHH----HHHHHH---------------HHHHHc-CCCHHHHHHHcCCCcCCCHH
Confidence 45555 899999999999999988433 233333 223333 25666666666666666667
Q ss_pred HHHHHHHHHHHHhHHHHh
Q 039069 101 RLSLICVRMVVKDFKAIT 118 (293)
Q Consensus 101 ~L~~~c~~~I~~nf~~v~ 118 (293)
.|...|...|..|-..|.
T Consensus 93 el~~~v~~vi~~n~~~v~ 110 (148)
T PF02637_consen 93 ELEALVEEVIAENPKEVE 110 (148)
T ss_dssp HHHHHHHHHHHC-HHHHH
T ss_pred HHHHHHHHHHHHCHHHHH
Confidence 888999999988877664
No 44
>PHA02790 Kelch-like protein; Provisional
Probab=45.40 E-value=15 Score=36.09 Aligned_cols=43 Identities=14% Similarity=0.321 Sum_probs=34.7
Q ss_pred HHHHHHHHhc--CCChHhHHHHHHHhhhCChHHHHHHHHHHHHHh
Q 039069 71 RVCEYFLEQG--GLTKENVIDVLQLARNCDAPRLSLICVRMVVKD 113 (293)
Q Consensus 71 ~~C~~~L~~~--~l~~~Nvv~il~lA~~~~~~~L~~~c~~~I~~n 113 (293)
+.-.+|+=.+ .|+.+||-+++..|.....+.+.+.|.+|+.++
T Consensus 75 ~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~ 119 (480)
T PHA02790 75 TSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRD 119 (480)
T ss_pred HHHHHhheeeeEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 3334555443 368999999999999999999999999999754
No 45
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=39.45 E-value=19 Score=34.43 Aligned_cols=64 Identities=17% Similarity=-0.009 Sum_probs=36.9
Q ss_pred CCCHHHHHHhcCCCCcCCcCeEEcCCCCHHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHhhcCcchH
Q 039069 2 IASPVLGNILQQSKVKNGFKYIKIPGVPHEAVYAFFRFLYSSCFEEEDLKKFVLHLLVLSHSYLVPPL 69 (293)
Q Consensus 2 a~S~yF~aMf~~~~~E~~~~~I~L~~vs~~~~~~~L~flYtg~i~~~~~~~~v~~LL~lA~~y~v~~L 69 (293)
++|.+|..-+..-+ ....+|+-..+-+.+|..|+.|+|-..- . +..+.-..|+.+..+|++..|
T Consensus 171 arSs~~~~k~v~~~--~~~heI~~~~v~~~~f~~flk~lyl~~n-a-~~~~qynallsi~~kF~~e~l 234 (516)
T KOG0511|consen 171 ARSSNYFPKDVMFY--VQGHEIEAHRVILSAFSPFLKQLYLNTN-A-EWKDQYNALLSIEVKFSKEKL 234 (516)
T ss_pred hhhcccCchhhhhc--cccCchhhhhhhHhhhhHHHHHHHHhhh-h-hhhhHHHHHHhhhhhccHHHh
Confidence 45655543332222 1234576677889999999999997621 1 112233556666666665544
No 46
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=35.87 E-value=49 Score=28.16 Aligned_cols=56 Identities=11% Similarity=-0.028 Sum_probs=42.4
Q ss_pred EEcCCCCHHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHhhcCcchHHHHHHHHHHhc
Q 039069 23 IKIPGVPHEAVYAFFRFLYSSCFEEEDLKKFVLHLLVLSHSYLVPPLKRVCEYFLEQG 80 (293)
Q Consensus 23 I~L~~vs~~~~~~~L~flYtg~i~~~~~~~~v~~LL~lA~~y~v~~Lk~~C~~~L~~~ 80 (293)
-.+-|=+|..|..+|+|+-.|++-.+ .-.-..+|.-|+.|.+++|+++-.+.|..+
T Consensus 66 AYlIDRDP~~FgpvLNylRhgklvl~--~l~eeGvL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 66 AYLIDRDPFYFGPVLNYLRHGKLVLN--KLSEEGVLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred ceEeccCcchHHHHHHHHhcchhhhh--hhhhhccchhhhccCChHHHHHHHHHHHHH
Confidence 44457789999999999999988443 111223788899999999988888777763
No 47
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=35.72 E-value=85 Score=31.82 Aligned_cols=33 Identities=18% Similarity=0.384 Sum_probs=30.3
Q ss_pred CCChHhHHHHHHHhhhCChHHHHHHHHHHHHHh
Q 039069 81 GLTKENVIDVLQLARNCDAPRLSLICVRMVVKD 113 (293)
Q Consensus 81 ~l~~~Nvv~il~lA~~~~~~~L~~~c~~~I~~n 113 (293)
.|+.+||-+++..|..+..+.+.+.|.+|+.++
T Consensus 101 ~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~ 133 (571)
T KOG4441|consen 101 EISEDNVQELLEAASLLQIPEVVDACCEFLESQ 133 (571)
T ss_pred EechHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 378899999999999999999999999999753
No 48
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=31.94 E-value=47 Score=23.01 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=22.5
Q ss_pred CChHhHHHHHHHhhhCChHHHHHHH
Q 039069 82 LTKENVIDVLQLARNCDAPRLSLIC 106 (293)
Q Consensus 82 l~~~Nvv~il~lA~~~~~~~L~~~c 106 (293)
++.+|+..++.+|..|+.+.|.+.|
T Consensus 65 ~~~~~~~~l~~~a~~~~~~~l~~~c 89 (90)
T smart00225 65 LPEENVEELLELADYLQIPGLVELC 89 (90)
T ss_pred cCHHHHHHHHHHHHHHCcHHHHhhh
Confidence 6677999999999999999998877
No 49
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=31.93 E-value=32 Score=25.22 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=14.3
Q ss_pred CCCcchHHHHHHHHHHH
Q 039069 220 GGCVHCKRMWQLLELHS 236 (293)
Q Consensus 220 ~gC~~C~~~~~l~~~ha 236 (293)
.+|+.|++.+++|.-+.
T Consensus 8 ~~Cp~C~~ak~~L~~~~ 24 (86)
T TIGR02183 8 PGCPYCVRAKQLAEKLA 24 (86)
T ss_pred CCCccHHHHHHHHHHhC
Confidence 48999999999987653
No 50
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=31.65 E-value=88 Score=22.58 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=29.1
Q ss_pred CChHhHHHHHHHhhhCChHHHHHHHHHHHHHhHH
Q 039069 82 LTKENVIDVLQLARNCDAPRLSLICVRMVVKDFK 115 (293)
Q Consensus 82 l~~~Nvv~il~lA~~~~~~~L~~~c~~~I~~nf~ 115 (293)
++.+..++++..|...+.+.|.+.|..+|+..+.
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIK 44 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc
Confidence 7889999999999999999999999999987654
No 51
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=25.89 E-value=53 Score=31.84 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHHhcCCChHhHH
Q 039069 51 KKFVLHLLVLSHSYLVPPLKRVCEYFLEQGGLTKENVI 88 (293)
Q Consensus 51 ~~~v~~LL~lA~~y~v~~Lk~~C~~~L~~~~l~~~Nvv 88 (293)
.+++...+.+|.+|++.+++..|.++|..+.++..|+-
T Consensus 172 pkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q 209 (488)
T KOG4682|consen 172 PKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQ 209 (488)
T ss_pred hhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHH
Confidence 57788899999999999999999999988655655554
No 52
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=25.68 E-value=3.6e+02 Score=22.73 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=22.7
Q ss_pred HHHHHHhhhCChHHHHHHHHHHHHHhHHHHhcccccch
Q 039069 88 IDVLQLARNCDAPRLSLICVRMVVKDFKAITSTEGWKI 125 (293)
Q Consensus 88 v~il~lA~~~~~~~L~~~c~~~I~~nf~~v~~se~f~~ 125 (293)
-.+++.|...+.+.+.-...+|+.++=..+..+++|..
T Consensus 124 ~~fLeAA~~~~D~~lf~~V~~ff~~~n~~~~~~~~f~~ 161 (167)
T PF07035_consen 124 RKFLEAAANSNDDQLFYAVFRFFEERNLRLRGSPSFTK 161 (167)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhHhhcCCCCCCc
Confidence 34445555555666666667776655555666777654
No 53
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=24.51 E-value=3.8e+02 Score=21.67 Aligned_cols=22 Identities=5% Similarity=0.209 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHhhhhCCCCCcc
Q 039069 27 GVPHEAVYAFFRFLYSSCFEEE 48 (293)
Q Consensus 27 ~vs~~~~~~~L~flYtg~i~~~ 48 (293)
.++++.|..++..++.|.++..
T Consensus 38 ~i~~~~l~~li~lv~~g~It~~ 59 (147)
T smart00845 38 PITPEHLAELLKLIEDGTISGK 59 (147)
T ss_pred CCCHHHHHHHHHHHHcCCCcHH
Confidence 5788999999999999988543
No 54
>TIGR02425 decarb_PcaC 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus.
Probab=23.24 E-value=3.8e+02 Score=21.20 Aligned_cols=80 Identities=9% Similarity=0.103 Sum_probs=55.2
Q ss_pred EcCCCCHHHHHHHHhhhhCCCCCc---chHHHHHHHHHHHHhhcCcchHHHHHHHHHHhcCCChHhHHHHHHHhhhC-Ch
Q 039069 24 KIPGVPHEAVYAFFRFLYSSCFEE---EDLKKFVLHLLVLSHSYLVPPLKRVCEYFLEQGGLTKENVIDVLQLARNC-DA 99 (293)
Q Consensus 24 ~L~~vs~~~~~~~L~flYtg~i~~---~~~~~~v~~LL~lA~~y~v~~Lk~~C~~~L~~~~l~~~Nvv~il~lA~~~-~~ 99 (293)
.+.+.+|+-.+.+.+|.|.+-... +.-......|-.++-.=..+.|+......|..+ ++++-..+++..+..| |.
T Consensus 27 ~~~~~~p~~~~~~~~~~fgdv~~r~~Ld~k~R~Litla~laa~g~~~~l~~h~~~Al~~G-~T~~ei~Evl~q~~~y~G~ 105 (123)
T TIGR02425 27 ATTDFDQPFQELITEYAWGTVWTRPGLTKRERSLVTIALLAALGRDEELAMHVRATANTG-VTEDDIKEVLLHVAIYAGV 105 (123)
T ss_pred cccccCHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCH
Confidence 457889998888899998865432 221333444444444445677888999999997 9999999887776665 55
Q ss_pred HHHHH
Q 039069 100 PRLSL 104 (293)
Q Consensus 100 ~~L~~ 104 (293)
|....
T Consensus 106 P~a~~ 110 (123)
T TIGR02425 106 PAANH 110 (123)
T ss_pred HHHHH
Confidence 55443
No 55
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=20.89 E-value=96 Score=29.01 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=33.7
Q ss_pred HHHhcCCCC--cC-CcCeEEc-CCCCHHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHhhcCcc
Q 039069 8 GNILQQSKV--KN-GFKYIKI-PGVPHEAVYAFFRFLYSSCFEEEDLKKFVLHLLVLSHSYLVP 67 (293)
Q Consensus 8 ~aMf~~~~~--E~-~~~~I~L-~~vs~~~~~~~L~flYtg~i~~~~~~~~v~~LL~lA~~y~v~ 67 (293)
-+||.+++. .. ..++.++ +||+..+|+++|+|--||.+.-.. .-.+.+|-++.|++.|+
T Consensus 123 g~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~-~vSvpELrEACDYLlip 185 (438)
T KOG3840|consen 123 GRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPS-SVSVSELREACDYLLVP 185 (438)
T ss_pred hhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCC-CCchHHHHhhcceEEee
Confidence 456655432 11 1233444 689999999999999998763211 12244444455544443
No 56
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=20.53 E-value=65 Score=23.23 Aligned_cols=15 Identities=40% Similarity=0.640 Sum_probs=12.8
Q ss_pred CCCcchHHHHHHHHH
Q 039069 220 GGCVHCKRMWQLLEL 234 (293)
Q Consensus 220 ~gC~~C~~~~~l~~~ 234 (293)
.+|+.|++.+.+|.-
T Consensus 9 ~~C~~C~~a~~~L~~ 23 (85)
T PRK11200 9 PGCPYCVRAKELAEK 23 (85)
T ss_pred CCChhHHHHHHHHHh
Confidence 489999999999875
No 57
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=20.14 E-value=66 Score=21.38 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=12.4
Q ss_pred CCCcchHHHHHHHHH
Q 039069 220 GGCVHCKRMWQLLEL 234 (293)
Q Consensus 220 ~gC~~C~~~~~l~~~ 234 (293)
-||+.|++...+|.-
T Consensus 7 ~~C~~C~~~~~~L~~ 21 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDE 21 (60)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 489999999999843
Done!