BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039070
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 120 bits (301), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/104 (54%), Positives = 78/104 (75%), Gaps = 3/104 (2%)
Query: 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGSFTE 71
+G W+ EED+K+I+ V +G W+ + K L G R GK CR RW N+L P++K+ S+TE
Sbjct: 7 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG--RLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 72 QEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
+E+RII + H++LGNRWA+IAK LPGRTDN VKN WNS IK+K+
Sbjct: 65 EEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 77/104 (74%), Gaps = 3/104 (2%)
Query: 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGSFTE 71
+G W+ EED+++I+HV +G WS + K L G R GK CR RW N+L P++K+ S+TE
Sbjct: 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 84
Query: 72 QEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
+E+RII H+ LGNRWA+IAK LPGRTDN VKN WNS +++K+
Sbjct: 85 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 115 bits (288), Expect = 3e-26, Method: Composition-based stats.
Identities = 55/104 (52%), Positives = 76/104 (73%), Gaps = 3/104 (2%)
Query: 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGSFTE 71
+G W+ EED+++IK V +G WS + K L G R GK CR RW N+L P++K+ S+TE
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 72 QEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
+E+RII H+ LGNRWA+IAK LPGRTDN +KN WNS +++K+
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 115 bits (288), Expect = 4e-26, Method: Composition-based stats.
Identities = 55/104 (52%), Positives = 76/104 (73%), Gaps = 3/104 (2%)
Query: 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGSFTE 71
+G W+ EED+++IK V +G WS + K L G R GK CR RW N+L P++K+ S+TE
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 72 QEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
+E+RII H+ LGNRWA+IAK LPGRTDN +KN WNS +++K+
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 76/104 (73%), Gaps = 3/104 (2%)
Query: 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGSFTE 71
+G W+ EED+++IK V +G WS + K L G R GK CR RW N+L P++K+ S+TE
Sbjct: 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 115
Query: 72 QEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
+E+RII H+ LGNRWA+IAK LPGRTDN +KN WNS +++K+
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 64/105 (60%), Gaps = 5/105 (4%)
Query: 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGL--QRCGKSCRLRWINYLRPDLKRGSFT 70
+G ++ ED+ + ++V +G +W P++ R K CR RW N+L P + + ++T
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 71 EQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
+E+ I + LG++W+ IAK +PGRTDN +KN WNS I K++
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 72.4 bits (176), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/52 (59%), Positives = 43/52 (82%)
Query: 64 LKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
+K+ S+TE+E+RII H+ LGNRWA+IAK LPGRTDN +KN WNS +++K+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 72.0 bits (175), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/53 (56%), Positives = 44/53 (83%)
Query: 63 DLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
++K+ S+TE+E+RI+ H+ LGNRWA+IAK LPGRTDN +KN WNS +++K+
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFT 70
K+ ++PEEDE L + V HG W + R + CR RW NYL P + +T
Sbjct: 9 AKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWT 66
Query: 71 EQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLI 128
+E+ +++ + G +WA IAK PGRTD +KN W I KL GI P T ++
Sbjct: 67 AEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW-VTISNKL---GI-PQTQQML 119
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 17 SPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERI 76
+ EED KL + V +G W + +L + R + CR RW NY+ P L+ ++ +E+ +
Sbjct: 5 TEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 77 IIDIHRILGNRWAQIAKHLPGRTDNEVKNFW 107
+ + G +W +I+K L R+DN ++N W
Sbjct: 64 LDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 48.9 bits (115), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPD 63
+G W+ EED++LIK V +G WS + K L G R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
Score = 33.5 bits (75), Expect = 0.16, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 64 LKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNS 109
L +G +T++E++ +I + + G RW+ IAKHL GR + + W++
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 47.8 bits (112), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPD 63
+G W+ EED+++IK V +G WS + K L G R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 64 LKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNS 109
L +G +T++E++ +I + + G RW+ IAKHL GR + + W++
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPD 63
+G W+ EED+++I+ V +G WS + K L G R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
Score = 35.0 bits (79), Expect = 0.064, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 64 LKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNS 109
L +G +T++E++ +I++ + G RW+ IAKHL GR + + W++
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 37.0 bits (84), Expect = 0.016, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 15 LWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFT 70
+W EDE L V +G WS + L ++ K C+ RW +L P +K+ ++
Sbjct: 11 VWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 16 WSPEEDEKLIKHVTTHGHGSWSSV 39
W+ EEDEKL+ V +G+GSW+ +
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 16 WSPEEDEKLIKHVTTHGHGSWSSV 39
W+ EEDEKL+ V +G+GSW+ +
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 31.2 bits (69), Expect = 0.82, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 16 WSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63
W+ EEDEKL K V +G W + R C+ RW L P+
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 31.2 bits (69), Expect = 0.82, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 16 WSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63
W+ EEDEKL K V +G W + R C+ RW L P+
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|1IGN|A Chain A, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
Site
pdb|1IGN|B Chain B, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
Site
Length = 246
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 62 PDLKRGSFTEQEERIIIDIHRILGNR------WAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
P + SFT++E+ I+D+ R R + +I+ ++P T N +++ + + K+L
Sbjct: 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63
>pdb|3UKG|A Chain A, Crystal Structure Of Rap1DNA COMPLEX
Length = 242
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 66 RGSFTEQEERIIIDIHRILGNR------WAQIAKHLPGRTDNEVKNFWNSCIKKKL 115
+ SFT++E+ I+D+ R R + +I+ ++P T N +++ + + K+L
Sbjct: 1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 56
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 28.1 bits (61), Expect = 8.0, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 84 LGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHN 126
G RW +I+K + RT +VK++ K K + G+D T N
Sbjct: 27 FGRRWTKISKLIGSRTVLQVKSYARQYFKNK-VKCGLDKETPN 68
>pdb|1BA5|A Chain A, Dna-Binding Domain Of Human Telomeric Protein, Htrf1,
Nmr, 18 Structures
Length = 53
Score = 28.1 bits (61), Expect = 8.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 12 KRGLWSPEEDEKLIKHVTTHGHGSWSSV 39
KR W EED+ L V +G G+WS +
Sbjct: 2 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 29
>pdb|1W0T|A Chain A, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0T|B Chain B, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna
Length = 53
Score = 28.1 bits (61), Expect = 8.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 12 KRGLWSPEEDEKLIKHVTTHGHGSWSSV 39
KR W EED+ L V +G G+WS +
Sbjct: 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 28
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 27.7 bits (60), Expect = 8.4, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 86 NRWAQIAKHLPGRTDNEVKNFWNSCIKK-KLIARGIDP 122
+RWA +A+ + GRT EVK + ++ K I G P
Sbjct: 32 DRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP 69
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 27.7 bits (60), Expect = 8.8, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 16 WSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCR 53
W +E+ LI T G G+W+ + G R + CR
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECR 49
>pdb|1IV6|A Chain A, Solution Structure Of The Dna Complex Of Human Trf1
Length = 70
Score = 27.7 bits (60), Expect = 9.8, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 12 KRGLWSPEEDEKLIKHVTTHGHGSWSSV 39
KR W EED+ L V +G G+WS +
Sbjct: 10 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 37
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 84 LGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLIS 129
+ + WA I KH PG + ++ N CIK+ + + + N L+S
Sbjct: 88 MTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLS 133
>pdb|1ITY|A Chain A, Solution Structure Of The Dna Binding Domain Of Human
Trf1
Length = 69
Score = 27.7 bits (60), Expect = 9.9, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 12 KRGLWSPEEDEKLIKHVTTHGHGSWSSV 39
KR W EED+ L V +G G+WS +
Sbjct: 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,004,934
Number of Sequences: 62578
Number of extensions: 466883
Number of successful extensions: 1083
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1027
Number of HSP's gapped (non-prelim): 54
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)