Query 039070
Match_columns 338
No_of_seqs 191 out of 1382
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 06:01:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03091 hypothetical protein; 100.0 6.8E-38 1.5E-42 311.1 12.2 133 1-133 1-134 (459)
2 PLN03212 Transcription repress 100.0 2.5E-37 5.4E-42 288.7 10.7 127 4-130 16-142 (249)
3 KOG0048 Transcription factor, 100.0 4.3E-36 9.2E-41 280.0 11.3 115 11-125 7-121 (238)
4 KOG0049 Transcription factor, 99.7 1.5E-17 3.2E-22 171.6 6.7 119 9-128 301-423 (939)
5 KOG0049 Transcription factor, 99.7 4.3E-17 9.3E-22 168.2 5.3 97 9-106 356-453 (939)
6 PF13921 Myb_DNA-bind_6: Myb-l 99.6 2.6E-16 5.6E-21 116.8 2.2 60 16-77 1-60 (60)
7 COG5147 REB1 Myb superfamily p 99.5 7.4E-15 1.6E-19 150.4 5.6 108 8-116 15-122 (512)
8 KOG0050 mRNA splicing protein 99.5 1.9E-14 4.1E-19 146.0 4.3 106 11-118 5-110 (617)
9 KOG0051 RNA polymerase I termi 99.5 2.7E-14 5.9E-19 147.9 5.3 105 12-119 383-515 (607)
10 PF00249 Myb_DNA-binding: Myb- 99.4 6.4E-13 1.4E-17 95.2 5.7 46 66-111 1-48 (48)
11 PF13921 Myb_DNA-bind_6: Myb-l 99.4 2.2E-13 4.8E-18 101.0 2.5 57 69-125 1-57 (60)
12 PLN03212 Transcription repress 99.3 8.5E-13 1.8E-17 124.4 4.9 79 43-129 10-90 (249)
13 PF00249 Myb_DNA-binding: Myb- 99.3 2E-13 4.3E-18 97.8 -0.6 48 13-60 1-48 (48)
14 KOG0048 Transcription factor, 99.2 2.4E-12 5.3E-17 120.4 2.7 70 62-131 5-76 (238)
15 smart00717 SANT SANT SWI3, AD 99.2 2.8E-11 6.2E-16 83.5 6.0 47 66-112 1-48 (49)
16 PLN03091 hypothetical protein; 99.2 6.6E-12 1.4E-16 126.2 3.4 68 61-128 9-78 (459)
17 cd00167 SANT 'SWI3, ADA2, N-Co 99.1 2.8E-10 6.1E-15 77.5 5.9 44 68-111 1-45 (45)
18 smart00717 SANT SANT SWI3, AD 98.9 2E-10 4.3E-15 79.3 1.1 48 13-61 1-48 (49)
19 KOG0051 RNA polymerase I termi 98.9 1E-09 2.2E-14 114.3 5.7 120 11-132 306-451 (607)
20 cd00167 SANT 'SWI3, ADA2, N-Co 98.8 1.3E-09 2.7E-14 74.3 0.8 44 15-59 1-44 (45)
21 COG5147 REB1 Myb superfamily p 98.4 2.1E-08 4.5E-13 103.5 -2.6 97 12-111 290-396 (512)
22 TIGR01557 myb_SHAQKYF myb-like 97.7 1.2E-05 2.5E-10 60.6 1.2 49 12-60 2-54 (57)
23 KOG0050 mRNA splicing protein 97.6 4.4E-05 9.6E-10 78.8 3.5 64 64-127 5-69 (617)
24 TIGR01557 myb_SHAQKYF myb-like 97.6 0.00019 4.2E-09 54.0 5.9 46 66-111 3-54 (57)
25 KOG0457 Histone acetyltransfer 97.5 2.4E-05 5.2E-10 79.2 0.6 90 10-100 69-180 (438)
26 TIGR02894 DNA_bind_RsfA transc 97.5 0.00014 3.1E-09 65.2 5.1 53 65-118 3-62 (161)
27 KOG0457 Histone acetyltransfer 97.4 0.0004 8.6E-09 70.5 6.8 49 63-111 69-118 (438)
28 PF08914 Myb_DNA-bind_2: Rap1 97.1 0.00079 1.7E-08 52.0 4.2 50 66-115 2-61 (65)
29 PF13837 Myb_DNA-bind_4: Myb/S 97.0 0.00073 1.6E-08 53.1 3.6 49 66-114 1-67 (90)
30 PF13325 MCRS_N: N-terminal re 97.0 0.0014 3E-08 60.9 5.7 98 15-114 1-129 (199)
31 KOG1279 Chromatin remodeling f 96.7 0.0022 4.9E-08 66.8 5.4 46 65-110 252-297 (506)
32 COG5259 RSC8 RSC chromatin rem 96.7 0.002 4.4E-08 66.2 4.8 45 66-110 279-323 (531)
33 PRK13923 putative spore coat p 96.5 0.0037 8E-08 56.8 4.5 53 64-117 3-62 (170)
34 COG5259 RSC8 RSC chromatin rem 96.4 0.00081 1.8E-08 69.0 0.2 46 12-59 278-323 (531)
35 KOG1279 Chromatin remodeling f 96.2 0.0016 3.5E-08 67.8 1.0 48 10-59 250-297 (506)
36 PF08914 Myb_DNA-bind_2: Rap1 96.1 0.0017 3.6E-08 50.2 0.3 52 13-64 2-61 (65)
37 PF13873 Myb_DNA-bind_5: Myb/S 95.7 0.029 6.2E-07 43.4 5.6 48 66-113 2-71 (78)
38 TIGR02894 DNA_bind_RsfA transc 95.6 0.003 6.6E-08 56.8 -0.1 50 11-62 2-57 (161)
39 COG5114 Histone acetyltransfer 95.1 0.0048 1E-07 61.0 -0.5 50 11-61 61-110 (432)
40 PF13837 Myb_DNA-bind_4: Myb/S 94.7 0.0053 1.1E-07 48.2 -1.2 47 13-59 1-63 (90)
41 PLN03142 Probable chromatin-re 94.6 0.051 1.1E-06 61.3 5.8 100 15-115 826-988 (1033)
42 COG5114 Histone acetyltransfer 94.5 0.045 9.8E-07 54.4 4.4 46 66-111 63-109 (432)
43 PRK13923 putative spore coat p 93.3 0.014 3.1E-07 53.0 -1.3 50 10-61 2-57 (170)
44 KOG4282 Transcription factor G 92.3 0.29 6.4E-06 48.1 6.1 49 66-114 54-116 (345)
45 PF09111 SLIDE: SLIDE; InterP 92.1 0.29 6.3E-06 42.0 5.1 51 63-113 46-112 (118)
46 PF12776 Myb_DNA-bind_3: Myb/S 92.0 0.44 9.6E-06 37.7 5.8 46 68-113 1-64 (96)
47 PF13873 Myb_DNA-bind_5: Myb/S 91.7 0.027 5.9E-07 43.6 -1.5 49 12-60 1-69 (78)
48 KOG2656 DNA methyltransferase 89.4 0.26 5.7E-06 50.1 2.7 85 35-120 75-190 (445)
49 COG5118 BDP1 Transcription ini 89.3 0.61 1.3E-05 47.5 5.1 47 67-113 366-412 (507)
50 PF08281 Sigma70_r4_2: Sigma-7 89.1 1.2 2.6E-05 31.8 5.3 42 71-113 12-53 (54)
51 KOG1194 Predicted DNA-binding 81.7 3.2 6.9E-05 43.3 6.0 49 65-113 186-234 (534)
52 PF09111 SLIDE: SLIDE; InterP 79.6 1.4 3.1E-05 37.8 2.4 34 10-43 46-82 (118)
53 PF04545 Sigma70_r4: Sigma-70, 75.1 8.8 0.00019 27.0 5.1 41 72-113 7-47 (50)
54 PF13404 HTH_AsnC-type: AsnC-t 74.4 8.3 0.00018 27.1 4.7 38 72-110 3-41 (42)
55 KOG4468 Polycomb-group transcr 73.5 5.6 0.00012 42.9 5.2 51 66-116 88-148 (782)
56 PF11626 Rap1_C: TRF2-interact 72.7 3.4 7.3E-05 33.2 2.7 23 10-32 44-74 (87)
57 PRK11179 DNA-binding transcrip 72.1 6.2 0.00013 34.4 4.4 45 71-116 8-53 (153)
58 TIGR02985 Sig70_bacteroi1 RNA 70.1 12 0.00025 31.2 5.6 39 74-113 118-156 (161)
59 KOG4282 Transcription factor G 68.4 1.4 3.1E-05 43.3 -0.4 47 13-59 54-112 (345)
60 PF11035 SnAPC_2_like: Small n 67.7 21 0.00045 35.9 7.4 48 66-113 21-72 (344)
61 KOG4167 Predicted DNA-binding 67.5 11 0.00023 41.7 5.7 47 66-112 619-665 (907)
62 PRK11169 leucine-responsive tr 65.7 8.1 0.00017 34.1 3.8 45 71-116 13-58 (164)
63 COG5118 BDP1 Transcription ini 63.3 3.7 8.1E-05 42.0 1.4 68 9-78 361-436 (507)
64 smart00595 MADF subfamily of S 63.1 11 0.00024 29.4 3.8 24 88-112 30-53 (89)
65 KOG4329 DNA-binding protein [G 61.3 14 0.00031 37.8 5.0 46 67-112 278-324 (445)
66 PF13404 HTH_AsnC-type: AsnC-t 58.0 2.1 4.5E-05 30.1 -1.0 38 19-58 3-40 (42)
67 PF07750 GcrA: GcrA cell cycle 56.2 16 0.00035 32.9 4.1 41 68-109 2-42 (162)
68 TIGR02937 sigma70-ECF RNA poly 56.1 27 0.00059 28.0 5.2 37 76-113 117-153 (158)
69 PRK11179 DNA-binding transcrip 54.0 3.4 7.4E-05 36.0 -0.6 45 19-65 9-53 (153)
70 PRK09652 RNA polymerase sigma 53.7 31 0.00067 29.4 5.3 33 80-113 139-171 (182)
71 PF12776 Myb_DNA-bind_3: Myb/S 51.8 5.8 0.00013 31.3 0.5 17 15-31 1-17 (96)
72 PRK11924 RNA polymerase sigma 51.8 33 0.00072 29.1 5.2 33 80-113 136-168 (179)
73 cd08319 Death_RAIDD Death doma 49.4 25 0.00055 28.3 3.8 29 74-103 2-30 (83)
74 KOG2009 Transcription initiati 49.2 17 0.00038 39.1 3.6 49 64-112 407-455 (584)
75 PF04504 DUF573: Protein of un 48.9 32 0.0007 28.4 4.5 47 68-114 6-65 (98)
76 PRK11169 leucine-responsive tr 48.8 3.5 7.5E-05 36.5 -1.4 45 18-64 13-57 (164)
77 PF01388 ARID: ARID/BRIGHT DNA 48.7 46 0.00099 26.2 5.2 37 76-112 40-89 (92)
78 PF13325 MCRS_N: N-terminal re 48.5 35 0.00076 32.0 5.1 45 68-113 1-48 (199)
79 PF07638 Sigma70_ECF: ECF sigm 48.2 41 0.00089 30.0 5.4 38 73-111 139-176 (185)
80 cd08803 Death_ank3 Death domai 48.0 31 0.00067 27.8 4.1 30 74-104 4-33 (84)
81 cd06171 Sigma70_r4 Sigma70, re 47.1 66 0.0014 21.2 5.2 41 69-111 11-51 (55)
82 smart00344 HTH_ASNC helix_turn 47.1 38 0.00082 27.2 4.6 45 72-117 3-48 (108)
83 COG2197 CitB Response regulato 46.8 32 0.00068 31.6 4.5 44 67-113 147-190 (211)
84 PF11427 HTH_Tnp_Tc3_1: Tc3 tr 46.7 40 0.00087 24.9 4.2 36 71-107 6-41 (50)
85 PRK09641 RNA polymerase sigma 46.3 44 0.00096 28.9 5.2 30 83-113 150-179 (187)
86 PRK09643 RNA polymerase sigma 45.9 47 0.001 29.5 5.4 33 80-113 145-177 (192)
87 smart00501 BRIGHT BRIGHT, ARID 45.6 53 0.0011 26.2 5.2 38 76-113 36-86 (93)
88 cd08317 Death_ank Death domain 44.7 27 0.00058 27.6 3.2 29 74-103 4-32 (84)
89 KOG4167 Predicted DNA-binding 44.1 7.9 0.00017 42.7 0.2 44 13-58 619-662 (907)
90 PRK04217 hypothetical protein; 43.2 63 0.0014 27.5 5.4 45 67-113 41-85 (110)
91 PRK12523 RNA polymerase sigma 42.7 84 0.0018 27.1 6.4 39 77-116 127-165 (172)
92 TIGR02939 RpoE_Sigma70 RNA pol 42.5 45 0.00097 29.0 4.6 29 84-113 153-181 (190)
93 PF11626 Rap1_C: TRF2-interact 42.5 15 0.00031 29.5 1.4 17 62-78 43-59 (87)
94 PF10545 MADF_DNA_bdg: Alcohol 42.1 29 0.00062 26.1 3.0 26 88-113 29-55 (85)
95 TIGR02954 Sig70_famx3 RNA poly 41.7 59 0.0013 27.9 5.3 31 82-113 132-162 (169)
96 PF00196 GerE: Bacterial regul 41.0 36 0.00078 24.6 3.2 43 68-113 3-45 (58)
97 PRK11923 algU RNA polymerase s 40.9 58 0.0013 28.6 5.2 29 84-113 153-181 (193)
98 PRK12529 RNA polymerase sigma 40.7 96 0.0021 27.1 6.5 37 80-117 138-174 (178)
99 PRK09047 RNA polymerase factor 40.5 72 0.0016 26.9 5.5 31 82-113 119-149 (161)
100 KOG3841 TEF-1 and related tran 39.6 58 0.0013 33.6 5.4 53 64-116 74-147 (455)
101 PRK09648 RNA polymerase sigma 39.4 72 0.0016 27.9 5.5 32 81-113 151-182 (189)
102 TIGR02948 SigW_bacill RNA poly 38.9 63 0.0014 27.9 5.0 29 84-113 151-179 (187)
103 PRK12532 RNA polymerase sigma 38.7 92 0.002 27.5 6.1 30 82-112 149-178 (195)
104 PRK12515 RNA polymerase sigma 38.3 77 0.0017 27.8 5.5 31 82-113 144-174 (189)
105 cd08318 Death_NMPP84 Death dom 38.2 46 0.00099 26.6 3.7 26 77-103 10-35 (86)
106 PRK09637 RNA polymerase sigma 38.1 73 0.0016 28.1 5.4 31 82-113 119-149 (181)
107 PRK12512 RNA polymerase sigma 37.1 82 0.0018 27.4 5.5 30 83-113 145-174 (184)
108 PRK09645 RNA polymerase sigma 37.1 83 0.0018 27.0 5.5 31 82-113 131-161 (173)
109 KOG0384 Chromodomain-helicase 36.7 37 0.0008 39.7 3.9 73 12-93 1132-1207(1373)
110 PRK12531 RNA polymerase sigma 36.4 85 0.0018 27.8 5.5 30 83-113 155-184 (194)
111 PRK12530 RNA polymerase sigma 36.0 85 0.0018 27.8 5.5 29 83-112 148-176 (189)
112 COG1522 Lrp Transcriptional re 35.7 65 0.0014 27.2 4.5 43 71-114 7-50 (154)
113 TIGR02943 Sig70_famx1 RNA poly 35.6 89 0.0019 27.7 5.5 33 80-113 142-174 (188)
114 PRK09642 RNA polymerase sigma 35.3 95 0.0021 26.3 5.5 31 82-113 119-149 (160)
115 smart00005 DEATH DEATH domain, 35.1 53 0.0012 25.3 3.6 30 73-103 4-34 (88)
116 cd08804 Death_ank2 Death domai 34.9 54 0.0012 26.2 3.6 31 74-105 4-34 (84)
117 cd08311 Death_p75NR Death doma 32.9 53 0.0012 26.1 3.2 33 71-105 2-34 (77)
118 KOG4468 Polycomb-group transcr 32.7 29 0.00063 37.7 2.2 48 12-60 87-143 (782)
119 PRK12524 RNA polymerase sigma 32.5 1E+02 0.0023 27.3 5.5 32 81-113 148-179 (196)
120 TIGR02999 Sig-70_X6 RNA polyme 32.4 1.1E+02 0.0024 26.4 5.5 30 83-113 148-177 (183)
121 PRK06759 RNA polymerase factor 31.3 1.2E+02 0.0027 25.2 5.5 30 83-113 120-149 (154)
122 TIGR02950 SigM_subfam RNA poly 30.7 42 0.00092 28.1 2.5 28 85-113 121-148 (154)
123 PRK12514 RNA polymerase sigma 29.8 1.3E+02 0.0027 26.1 5.4 29 84-113 144-172 (179)
124 cd08777 Death_RIP1 Death Domai 29.7 66 0.0014 25.9 3.3 30 75-105 3-32 (86)
125 TIGR02952 Sig70_famx2 RNA poly 29.7 1.3E+02 0.0028 25.4 5.4 29 84-113 137-165 (170)
126 PF13936 HTH_38: Helix-turn-he 29.6 67 0.0014 22.4 2.9 36 68-105 4-39 (44)
127 COG2963 Transposase and inacti 29.4 1.6E+02 0.0034 24.1 5.6 46 66-113 5-51 (116)
128 PRK12527 RNA polymerase sigma 29.3 1.4E+02 0.0031 25.2 5.6 29 84-113 120-148 (159)
129 cd08805 Death_ank1 Death domai 28.9 75 0.0016 25.7 3.5 22 74-95 4-25 (84)
130 PRK09649 RNA polymerase sigma 28.9 1.2E+02 0.0027 26.7 5.3 30 83-113 144-173 (185)
131 PRK13919 putative RNA polymera 28.7 1.4E+02 0.003 26.0 5.5 29 84-113 150-178 (186)
132 PF11035 SnAPC_2_like: Small n 28.6 1.1E+02 0.0023 31.1 5.1 86 13-112 21-127 (344)
133 PRK09651 RNA polymerase sigma 28.5 1.1E+02 0.0025 26.4 4.9 30 84-114 134-163 (172)
134 PRK12542 RNA polymerase sigma 28.4 1.4E+02 0.003 26.1 5.4 31 82-113 135-165 (185)
135 TIGR02984 Sig-70_plancto1 RNA 28.3 1.4E+02 0.003 25.7 5.4 31 82-113 153-183 (189)
136 PRK12528 RNA polymerase sigma 27.7 1.6E+02 0.0034 25.0 5.6 33 80-113 124-156 (161)
137 TIGR02983 SigE-fam_strep RNA p 27.6 1.4E+02 0.003 25.2 5.2 40 73-113 114-153 (162)
138 PRK05602 RNA polymerase sigma 27.6 1.3E+02 0.0029 26.2 5.2 30 83-113 142-171 (186)
139 PRK12547 RNA polymerase sigma 27.6 1.6E+02 0.0034 25.3 5.6 31 82-113 125-155 (164)
140 PRK12536 RNA polymerase sigma 27.1 1.5E+02 0.0033 25.8 5.5 32 81-113 141-172 (181)
141 PRK12516 RNA polymerase sigma 27.0 1.5E+02 0.0032 26.4 5.5 35 77-112 124-158 (187)
142 PRK00118 putative DNA-binding 26.7 1.7E+02 0.0037 24.6 5.4 41 71-112 19-59 (104)
143 PRK10360 DNA-binding transcrip 26.2 1.8E+02 0.0038 24.6 5.6 44 67-113 136-179 (196)
144 PRK11922 RNA polymerase sigma 25.8 82 0.0018 29.0 3.7 28 85-113 165-192 (231)
145 PF02954 HTH_8: Bacterial regu 25.7 1.7E+02 0.0036 20.1 4.4 33 73-106 6-38 (42)
146 PRK15201 fimbriae regulatory p 25.7 1.8E+02 0.0038 27.4 5.7 44 67-113 132-175 (198)
147 PRK10100 DNA-binding transcrip 25.6 1.5E+02 0.0033 27.3 5.4 43 68-113 155-197 (216)
148 KOG2656 DNA methyltransferase 25.5 29 0.00062 35.9 0.6 49 10-59 127-180 (445)
149 cd08779 Death_PIDD Death Domai 25.3 88 0.0019 25.0 3.3 21 75-95 3-23 (86)
150 PRK12546 RNA polymerase sigma 24.7 1.5E+02 0.0033 26.4 5.1 33 80-113 124-156 (188)
151 PRK12520 RNA polymerase sigma 24.0 1.8E+02 0.004 25.4 5.5 28 84-112 146-173 (191)
152 COG1522 Lrp Transcriptional re 23.9 19 0.00041 30.5 -0.8 43 19-63 8-50 (154)
153 PRK12545 RNA polymerase sigma 23.6 1.8E+02 0.004 26.0 5.4 36 84-120 154-192 (201)
154 PRK12537 RNA polymerase sigma 23.5 1.9E+02 0.0041 25.3 5.4 30 83-113 147-176 (182)
155 PRK09646 RNA polymerase sigma 23.4 1.9E+02 0.0041 25.5 5.5 30 83-113 156-185 (194)
156 PF09420 Nop16: Ribosome bioge 23.2 1.7E+02 0.0037 26.0 5.1 46 65-110 113-162 (164)
157 TIGR02960 SigX5 RNA polymerase 23.1 1.5E+02 0.0033 28.2 5.1 30 83-113 156-185 (324)
158 TIGR02989 Sig-70_gvs1 RNA poly 22.6 2.2E+02 0.0048 23.8 5.5 29 83-112 125-153 (159)
159 PRK06986 fliA flagellar biosyn 22.3 1.8E+02 0.0039 26.8 5.2 36 77-113 192-227 (236)
160 PF07750 GcrA: GcrA cell cycle 22.3 54 0.0012 29.5 1.7 37 15-54 2-38 (162)
161 PRK09483 response regulator; P 22.3 1.2E+02 0.0026 26.0 3.9 44 67-113 147-190 (217)
162 PLN03162 golden-2 like transcr 22.1 6.1E+02 0.013 26.5 9.1 45 66-110 237-286 (526)
163 PRK06811 RNA polymerase factor 22.1 2.1E+02 0.0046 25.1 5.5 35 84-120 146-180 (189)
164 PRK09638 RNA polymerase sigma 21.9 91 0.002 26.8 3.0 30 83-113 140-169 (176)
165 PRK09647 RNA polymerase sigma 21.6 2.1E+02 0.0047 25.8 5.5 29 84-113 153-181 (203)
166 PRK12519 RNA polymerase sigma 21.3 1.8E+02 0.0038 25.5 4.8 29 84-113 156-184 (194)
167 PF01710 HTH_Tnp_IS630: Transp 21.2 67 0.0015 26.9 2.0 56 20-78 58-113 (119)
168 PRK15411 rcsA colanic acid cap 20.7 1.7E+02 0.0036 26.6 4.6 43 68-113 137-179 (207)
169 cd01670 Death Death Domain: a 20.5 1.2E+02 0.0025 22.8 3.0 19 77-95 2-20 (79)
170 smart00344 HTH_ASNC helix_turn 20.2 31 0.00066 27.7 -0.3 43 19-63 3-45 (108)
No 1
>PLN03091 hypothetical protein; Provisional
Probab=100.00 E-value=6.8e-38 Score=311.05 Aligned_cols=133 Identities=72% Similarity=1.347 Sum_probs=128.4
Q ss_pred CCC-CCCccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHH
Q 039070 1 MGH-NCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIID 79 (338)
Q Consensus 1 mg~-~~c~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~ 79 (338)
||| +||+|++++||+||+|||++|+++|++||.++|..||+.++++|+++|||+||.++|+|.+++++||+|||++|++
T Consensus 1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe 80 (459)
T PLN03091 1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80 (459)
T ss_pred CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence 999 7999999999999999999999999999999999999999879999999999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCCCCCcc
Q 039070 80 IHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISPTSC 133 (338)
Q Consensus 80 lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l~pa~~ 133 (338)
++++||++|++||++|+|||+++||+||+.++||+++..++++.++.++.++..
T Consensus 81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~E~ 134 (459)
T PLN03091 81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVEN 134 (459)
T ss_pred HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccccc
Confidence 999999999999999999999999999999999999999999999988876543
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=100.00 E-value=2.5e-37 Score=288.74 Aligned_cols=127 Identities=57% Similarity=1.159 Sum_probs=122.5
Q ss_pred CCCccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHH
Q 039070 4 NCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRI 83 (338)
Q Consensus 4 ~~c~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~ 83 (338)
|||.|++++|++||+|||++|+++|++||..+|..||+.++++|+++|||+||.++|+|.+++++||+|||++|++++++
T Consensus 16 pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~ 95 (249)
T PLN03212 16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRL 95 (249)
T ss_pred CCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHh
Confidence 79999999999999999999999999999989999999997789999999999999999999999999999999999999
Q ss_pred cCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCCCC
Q 039070 84 LGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISP 130 (338)
Q Consensus 84 ~G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l~p 130 (338)
||++|+.||++|+|||+++||+||+.++++++.++++.+.++.++.+
T Consensus 96 ~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~~~ 142 (249)
T PLN03212 96 LGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDA 142 (249)
T ss_pred ccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999888877643
No 3
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=100.00 E-value=4.3e-36 Score=279.96 Aligned_cols=115 Identities=60% Similarity=1.137 Sum_probs=109.8
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 039070 11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQ 90 (338)
Q Consensus 11 lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~ 90 (338)
+.||+||+|||++|+++|++||.++|..||+.+|++|++++||.||.|||+|++++|.||+|||++|++||++||++|+.
T Consensus 7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~ 86 (238)
T KOG0048|consen 7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSL 86 (238)
T ss_pred ccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHH
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCC
Q 039070 91 IAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTH 125 (338)
Q Consensus 91 IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~ 125 (338)
||++|||||+++|||+|++.+||++.+.++++.+.
T Consensus 87 IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~~ 121 (238)
T KOG0048|consen 87 IAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPSTH 121 (238)
T ss_pred HHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999888555443
No 4
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.70 E-value=1.5e-17 Score=171.59 Aligned_cols=119 Identities=22% Similarity=0.438 Sum_probs=111.3
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCC---CcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcC
Q 039070 9 QKVKRGLWSPEEDEKLIKHVTTHGHG---SWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILG 85 (338)
Q Consensus 9 ~~lkkg~WT~EEDe~L~~lV~k~G~~---nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G 85 (338)
+-+++..||.|||.+|+++|+....+ +|++|-.+|+ ||+..|...||...|+|.+++|+||.+||.+|+.+|.+||
T Consensus 301 ~~L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ymp-gr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg 379 (939)
T KOG0049|consen 301 SQLSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMP-GRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYG 379 (939)
T ss_pred HHHHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcC-CcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhC
Confidence 45677899999999999999998665 6999999999 9999999999999999999999999999999999999999
Q ss_pred CC-HHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCC
Q 039070 86 NR-WAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLI 128 (338)
Q Consensus 86 ~k-Ws~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l 128 (338)
.+ |.+|-+.+|||++.|||.||.+.|....+.+.|+..++..+
T Consensus 380 ~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL 423 (939)
T KOG0049|consen 380 AKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQL 423 (939)
T ss_pred ccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHH
Confidence 65 99999999999999999999999999999999998887554
No 5
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.66 E-value=4.3e-17 Score=168.21 Aligned_cols=97 Identities=28% Similarity=0.513 Sum_probs=91.9
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcC-CC
Q 039070 9 QKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILG-NR 87 (338)
Q Consensus 9 ~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G-~k 87 (338)
|.+++|+||++||.+|+.+|.+||...|.+|-..++ +|+..|||+||+|.|+...|++.||-.||+.|+.+|.+|| ++
T Consensus 356 Psikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~ 434 (939)
T KOG0049|consen 356 PSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKGN 434 (939)
T ss_pred ccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccch
Confidence 789999999999999999999999999999999998 9999999999999999999999999999999999999999 67
Q ss_pred HHHHHhhCCCCCHHHHHHH
Q 039070 88 WAQIAKHLPGRTDNEVKNF 106 (338)
Q Consensus 88 Ws~IA~~LpgRT~~qcKnR 106 (338)
|.+||..||.||..|...|
T Consensus 435 WakcA~~Lp~~t~~q~~rr 453 (939)
T KOG0049|consen 435 WAKCAMLLPKKTSRQLRRR 453 (939)
T ss_pred HHHHHHHccccchhHHHHH
Confidence 9999999999999554433
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.60 E-value=2.6e-16 Score=116.82 Aligned_cols=60 Identities=40% Similarity=0.852 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHH
Q 039070 16 WSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERII 77 (338)
Q Consensus 16 WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~L 77 (338)
||+|||++|+++|.+||. +|..||+.|| .|++.||+.||.++|++.+++++||++||++|
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 999999999999999994 9999999998 89999999999999999999999999999987
No 7
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.52 E-value=7.4e-15 Score=150.40 Aligned_cols=108 Identities=31% Similarity=0.535 Sum_probs=102.2
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCCC
Q 039070 8 KQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNR 87 (338)
Q Consensus 8 K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~k 87 (338)
..+++.|.|+..||+.|..+|+++|..+|..||..++ .|+++||+.||.++++|.++++.|+.|||+.|+++..++|++
T Consensus 15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~ 93 (512)
T COG5147 15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ 93 (512)
T ss_pred cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence 3578899999999999999999999999999999998 699999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhhhHHH
Q 039070 88 WAQIAKHLPGRTDNEVKNFWNSCIKKKLI 116 (338)
Q Consensus 88 Ws~IA~~LpgRT~~qcKnRW~slLkkkl~ 116 (338)
|+.||..+++||+.+|.+||...+.....
T Consensus 94 wstia~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 94 WSTIADYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred hhhhccccCccchHHHHHHHHHHhhhhhc
Confidence 99999999999999999999988876544
No 8
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.9e-14 Score=145.96 Aligned_cols=106 Identities=25% Similarity=0.599 Sum_probs=100.3
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCCCHHH
Q 039070 11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQ 90 (338)
Q Consensus 11 lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~ 90 (338)
++.|-|+.-||+.|..+|.+||...|++|++.+. ..+++||+.||..+|+|.+++..|+.|||++|+++.+.+...|..
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt 83 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT 83 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence 5789999999999999999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHHHhhhHHHhC
Q 039070 91 IAKHLPGRTDNEVKNFWNSCIKKKLIAR 118 (338)
Q Consensus 91 IA~~LpgRT~~qcKnRW~slLkkkl~~~ 118 (338)
||..| ||+.++|-.||+.++-......
T Consensus 84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~~ 110 (617)
T KOG0050|consen 84 IADIM-GRTSQQCLERYNNLLDVYVSYH 110 (617)
T ss_pred HHHHh-hhhHHHHHHHHHHHHHHHHhhh
Confidence 99999 9999999999999997665443
No 9
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.48 E-value=2.7e-14 Score=147.88 Aligned_cols=105 Identities=29% Similarity=0.584 Sum_probs=94.5
Q ss_pred CccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCC--CCCCCCChHHHHHHHHHHH-------
Q 039070 12 KRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD--LKRGSFTEQEERIIIDIHR------- 82 (338)
Q Consensus 12 kkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~--lkkg~WT~EEDe~Ll~lv~------- 82 (338)
.+|.||+||++.|..+|.++| +.|.+|++.|| |.+..||+||++|...+ .++|+||.||+++|+++|.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~ 459 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL 459 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence 799999999999999999999 59999999998 99999999999999987 4899999999999999995
Q ss_pred Hc-------------------CCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCC
Q 039070 83 IL-------------------GNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG 119 (338)
Q Consensus 83 ~~-------------------G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g 119 (338)
++ +-.|+.|++.+.+|+..+||.+|+.++......++
T Consensus 460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~ 515 (607)
T KOG0051|consen 460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKR 515 (607)
T ss_pred cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcc
Confidence 33 12599999999999999999999999987654443
No 10
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.38 E-value=6.4e-13 Score=95.17 Aligned_cols=46 Identities=30% Similarity=0.726 Sum_probs=42.0
Q ss_pred CCCCChHHHHHHHHHHHHcCCC-HHHHHhhCC-CCCHHHHHHHHHHHh
Q 039070 66 RGSFTEQEERIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNSCI 111 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G~k-Ws~IA~~Lp-gRT~~qcKnRW~slL 111 (338)
|++||+|||++|++++++||.+ |..||..|+ |||..+|++||++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 5899999999999999999988 999999999 999999999999864
No 11
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.37 E-value=2.2e-13 Score=101.05 Aligned_cols=57 Identities=25% Similarity=0.592 Sum_probs=49.1
Q ss_pred CChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCC
Q 039070 69 FTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTH 125 (338)
Q Consensus 69 WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~ 125 (338)
||+|||++|++++..||++|..||++|+.||..+|++||+..|++.+..+.|+.+++
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd 57 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEED 57 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHH
Confidence 999999999999999999999999999669999999999998888888888876654
No 12
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.34 E-value=8.5e-13 Score=124.35 Aligned_cols=79 Identities=22% Similarity=0.486 Sum_probs=69.1
Q ss_pred ccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcC-CCHHHHHhhC-CCCCHHHHHHHHHHHhhhHHHhCCC
Q 039070 43 AGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILG-NRWAQIAKHL-PGRTDNEVKNFWNSCIKKKLIARGI 120 (338)
Q Consensus 43 lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~L-pgRT~~qcKnRW~slLkkkl~~~g~ 120 (338)
++ .|+..-|- ++.+++++||+|||++|+++|++|| .+|..||+++ ++||+.|||.||.++|++.++++.|
T Consensus 10 ~~-~~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpW 81 (249)
T PLN03212 10 VS-KKTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGI 81 (249)
T ss_pred CC-CCCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCC
Confidence 44 56555553 3478999999999999999999999 5799999998 6999999999999999999999999
Q ss_pred CcCCCCCCC
Q 039070 121 DPNTHNLIS 129 (338)
Q Consensus 121 ~~~e~~~l~ 129 (338)
+.+|+..|-
T Consensus 82 T~EED~lLl 90 (249)
T PLN03212 82 TSDEEDLIL 90 (249)
T ss_pred ChHHHHHHH
Confidence 999988763
No 13
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.31 E-value=2e-13 Score=97.81 Aligned_cols=48 Identities=42% Similarity=0.748 Sum_probs=43.2
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeeccc
Q 039070 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60 (338)
Q Consensus 13 kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L 60 (338)
|++||+|||++|+++|.+||.++|..||+.||.+|++.||+.||.++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998679999999988999999999998875
No 14
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.25 E-value=2.4e-12 Score=120.45 Aligned_cols=70 Identities=19% Similarity=0.347 Sum_probs=63.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHcCCC-HHHHHhhCC-CCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCCCCC
Q 039070 62 PDLKRGSFTEQEERIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISPT 131 (338)
Q Consensus 62 p~lkkg~WT~EEDe~Ll~lv~~~G~k-Ws~IA~~Lp-gRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l~pa 131 (338)
+.+.||+||+|||++|+++|++||.+ |..||+.++ +|+..+||-||.++|++.++++.|+.+|+..|-.+
T Consensus 5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~l 76 (238)
T KOG0048|consen 5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKL 76 (238)
T ss_pred ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHH
Confidence 44568999999999999999999955 999999998 99999999999999999999999999998776443
No 15
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.21 E-value=2.8e-11 Score=83.55 Aligned_cols=47 Identities=40% Similarity=0.916 Sum_probs=44.4
Q ss_pred CCCCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070 66 RGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCIK 112 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slLk 112 (338)
+++||++||.+|+.++.+|| .+|..||..|++||+.+|++||+.+++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999 999999999999999999999998764
No 16
>PLN03091 hypothetical protein; Provisional
Probab=99.20 E-value=6.6e-12 Score=126.21 Aligned_cols=68 Identities=18% Similarity=0.409 Sum_probs=62.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHcCC-CHHHHHhhC-CCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCC
Q 039070 61 RPDLKRGSFTEQEERIIIDIHRILGN-RWAQIAKHL-PGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLI 128 (338)
Q Consensus 61 ~p~lkkg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~L-pgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l 128 (338)
+..+++++||+|||++|+++|.+||. +|..||+.+ +||++.|||.||.++|++.++++.|+.+|+..|
T Consensus 9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lL 78 (459)
T PLN03091 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLI 78 (459)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHH
Confidence 35789999999999999999999995 699999998 599999999999999999999999999998643
No 17
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.08 E-value=2.8e-10 Score=77.52 Aligned_cols=44 Identities=34% Similarity=0.819 Sum_probs=41.7
Q ss_pred CCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHh
Q 039070 68 SFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCI 111 (338)
Q Consensus 68 ~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slL 111 (338)
+||++|++.|+.++.+|| .+|..||+.+++||..+|++||++++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 599999999999999999 89999999999999999999998753
No 18
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.95 E-value=2e-10 Score=79.30 Aligned_cols=48 Identities=40% Similarity=0.784 Sum_probs=44.5
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccC
Q 039070 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR 61 (338)
Q Consensus 13 kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~ 61 (338)
+++||++||++|+.++..||..+|..||+.++ +|++.+|+.||.+++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence 47899999999999999999669999999999 9999999999988764
No 19
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=98.92 E-value=1e-09 Score=114.26 Aligned_cols=120 Identities=24% Similarity=0.266 Sum_probs=97.0
Q ss_pred CCccCCCHHHHHHHHHHHHHhC----C-------------------CCcccccccccccccCccccceeecccCCCC-CC
Q 039070 11 VKRGLWSPEEDEKLIKHVTTHG----H-------------------GSWSSVPKLAGLQRCGKSCRLRWINYLRPDL-KR 66 (338)
Q Consensus 11 lkkg~WT~EEDe~L~~lV~k~G----~-------------------~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~l-kk 66 (338)
++-+.|+++||+.|.+.|..|- - +-|+.|.+.++ .|+...++.+-++...|-- ++
T Consensus 306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~~r 384 (607)
T KOG0051|consen 306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFENKR 384 (607)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCcccccc
Confidence 3448999999999999998772 1 12678888888 5999999874334334433 99
Q ss_pred CCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH--HHhCCCCcCCCCCCCCCc
Q 039070 67 GSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKK--LIARGIDPNTHNLISPTS 132 (338)
Q Consensus 67 g~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkkk--l~~~g~~~~e~~~l~pa~ 132 (338)
|.||+||++.|..+|.++|+.|..|++.| ||.+.+|++||+.+.+.. ...+.|+.++...+-.++
T Consensus 385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V 451 (607)
T KOG0051|consen 385 GKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTV 451 (607)
T ss_pred CCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999865 477778877765554443
No 20
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.80 E-value=1.3e-09 Score=74.27 Aligned_cols=44 Identities=39% Similarity=0.739 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecc
Q 039070 15 LWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59 (338)
Q Consensus 15 ~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~ 59 (338)
+||++||++|+.++.++|.++|..||+.++ +|++.+|+.||.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHh
Confidence 599999999999999999779999999998 89999999999765
No 21
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.41 E-value=2.1e-08 Score=103.49 Aligned_cols=97 Identities=33% Similarity=0.685 Sum_probs=86.0
Q ss_pred CccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCC--CCCCCCCChHHHHHHHHHHHHcC----
Q 039070 12 KRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRP--DLKRGSFTEQEERIIIDIHRILG---- 85 (338)
Q Consensus 12 kkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p--~lkkg~WT~EEDe~Ll~lv~~~G---- 85 (338)
.+|.||+||++.|...+..+| +.|..|.+.++ |-+..||+||++|..+ .+++++|+.||+.+|...+...-
T Consensus 290 ~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~~~--rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~~ 366 (512)
T COG5147 290 QRGKWTKEEEQELAKLVVEHG-GSWTEIGKLLG--RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEAQ 366 (512)
T ss_pred hhccCcccccccccccccccc-chhhHhhhhhc--cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHHh
Confidence 478999999999999999999 59999999887 9999999999999988 68889999999999999887432
Q ss_pred ----CCHHHHHhhCCCCCHHHHHHHHHHHh
Q 039070 86 ----NRWAQIAKHLPGRTDNEVKNFWNSCI 111 (338)
Q Consensus 86 ----~kWs~IA~~LpgRT~~qcKnRW~slL 111 (338)
-.|..|++.+++|....|+.++..+.
T Consensus 367 ~~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 396 (512)
T COG5147 367 QSSRILWLLIAQNIRNRLQHHCRDKYGVLI 396 (512)
T ss_pred hhhhhhHHHHHHhhhccccCCCCCcccccc
Confidence 25999999999999999988876644
No 22
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.73 E-value=1.2e-05 Score=60.59 Aligned_cols=49 Identities=14% Similarity=0.365 Sum_probs=43.2
Q ss_pred CccCCCHHHHHHHHHHHHHhCCCCc---ccccccccccc-cCccccceeeccc
Q 039070 12 KRGLWSPEEDEKLIKHVTTHGHGSW---SSVPKLAGLQR-CGKSCRLRWINYL 60 (338)
Q Consensus 12 kkg~WT~EEDe~L~~lV~k~G~~nW---~~IAk~lg~~R-t~kQCr~RW~n~L 60 (338)
++-.||+||.++++++|+.+|.|+| ..|++.|+..| +..||+.|++.|.
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 4567999999999999999998899 99999887566 9999999887764
No 23
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=4.4e-05 Score=78.77 Aligned_cols=64 Identities=19% Similarity=0.387 Sum_probs=58.6
Q ss_pred CCCCCCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCC
Q 039070 64 LKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNL 127 (338)
Q Consensus 64 lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~ 127 (338)
++.|-|+..||+.|..++.+|| +.|++||+.++-.|+.+|++||...+.+.+++-.|+-.++..
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eeder 69 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDER 69 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHH
Confidence 5678999999999999999999 569999999999999999999999999999999998777643
No 24
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.58 E-value=0.00019 Score=54.02 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=40.5
Q ss_pred CCCCChHHHHHHHHHHHHcCC-CH---HHHHhhCC-CC-CHHHHHHHHHHHh
Q 039070 66 RGSFTEQEERIIIDIHRILGN-RW---AQIAKHLP-GR-TDNEVKNFWNSCI 111 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G~-kW---s~IA~~Lp-gR-T~~qcKnRW~slL 111 (338)
+-.||+||..++++++..+|. +| ..|++.|. .| |..+|+.|.+.+.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 457999999999999999996 89 99999884 45 9999999987654
No 25
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.53 E-value=2.4e-05 Score=79.16 Aligned_cols=90 Identities=17% Similarity=0.374 Sum_probs=64.5
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeeccc-CCCCCCCCCC-------hHHHHHHHHH-
Q 039070 10 KVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL-RPDLKRGSFT-------EQEERIIIDI- 80 (338)
Q Consensus 10 ~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L-~p~lkkg~WT-------~EEDe~Ll~l- 80 (338)
.+-..-||.+|+-+|+++++.||.|||..||+++| .|++.+|+++|.+++ +..+-.-+|. ..|+....+.
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~fv~s~~~~~~~i~~~~~~~q~e~~~~~k~~ 147 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHFVNSPIFPLPDISLGIGVNQDEDAAMAKNR 147 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHHhcCccccccccccccCcchHHHhhhcccc
Confidence 45567899999999999999999999999999999 999999999998854 3222222222 3344443333
Q ss_pred HHHcCC-------------CHHHHHhhCCCCCH
Q 039070 81 HRILGN-------------RWAQIAKHLPGRTD 100 (338)
Q Consensus 81 v~~~G~-------------kWs~IA~~LpgRT~ 100 (338)
+..++. .=.+|+.+||+|.+
T Consensus 148 ~~~~~~~~~~pr~p~~~~p~~~e~~gyMp~R~d 180 (438)
T KOG0457|consen 148 AEPFQPTDLVPRKPGVSNPLRREISGYMPGRLD 180 (438)
T ss_pred cccCCCCCCCCCCCCCCCchHHHHhhhCccchh
Confidence 222221 23588999999954
No 26
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=97.50 E-value=0.00014 Score=65.17 Aligned_cols=53 Identities=17% Similarity=0.401 Sum_probs=46.1
Q ss_pred CCCCCChHHHHHHHHHHHHc---CCC----HHHHHhhCCCCCHHHHHHHHHHHhhhHHHhC
Q 039070 65 KRGSFTEQEERIIIDIHRIL---GNR----WAQIAKHLPGRTDNEVKNFWNSCIKKKLIAR 118 (338)
Q Consensus 65 kkg~WT~EEDe~Ll~lv~~~---G~k----Ws~IA~~LpgRT~~qcKnRW~slLkkkl~~~ 118 (338)
+...||.|||.+|.+.|..| |+. ...++..| +||+.+|.-|||+.+|+.+...
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~ 62 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEA 62 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHH
Confidence 46789999999999999887 432 88889999 9999999999999999987643
No 27
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.35 E-value=0.0004 Score=70.55 Aligned_cols=49 Identities=24% Similarity=0.489 Sum_probs=44.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHh
Q 039070 63 DLKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCI 111 (338)
Q Consensus 63 ~lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slL 111 (338)
.+-...||.+||-+|++++..|| ++|..||.++..||..+|+.||.++.
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence 45567899999999999999999 88999999999999999999997655
No 28
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=97.05 E-value=0.00079 Score=52.01 Aligned_cols=50 Identities=20% Similarity=0.454 Sum_probs=33.3
Q ss_pred CCCCChHHHHHHHHHHHHc--------CCC-HHHHHhhCC-CCCHHHHHHHHHHHhhhHH
Q 039070 66 RGSFTEQEERIIIDIHRIL--------GNR-WAQIAKHLP-GRTDNEVKNFWNSCIKKKL 115 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~--------G~k-Ws~IA~~Lp-gRT~~qcKnRW~slLkkkl 115 (338)
+.+||.|||+.|++.|+++ |++ |.++++.-+ .+|-.+.|+||...|+.+.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 4689999999999999765 233 999999877 8999999999988887653
No 29
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.99 E-value=0.00073 Score=53.12 Aligned_cols=49 Identities=29% Similarity=0.611 Sum_probs=34.8
Q ss_pred CCCCChHHHHHHHHHHHH------cC--C------CHHHHHhhC----CCCCHHHHHHHHHHHhhhH
Q 039070 66 RGSFTEQEERIIIDIHRI------LG--N------RWAQIAKHL----PGRTDNEVKNFWNSCIKKK 114 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~------~G--~------kWs~IA~~L----pgRT~~qcKnRW~slLkkk 114 (338)
|..||.+|...|++++.. ++ . .|..||..| ..||+.||++||.++.+..
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y 67 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY 67 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 357999999999999877 21 1 399999987 4699999999999966553
No 30
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.96 E-value=0.0014 Score=60.89 Aligned_cols=98 Identities=20% Similarity=0.355 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccccccccc--ccccCccccceeecccC-CC--------------------CCCCCCCh
Q 039070 15 LWSPEEDEKLIKHVTTHGHGSWSSVPKLAG--LQRCGKSCRLRWINYLR-PD--------------------LKRGSFTE 71 (338)
Q Consensus 15 ~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg--~~Rt~kQCr~RW~n~L~-p~--------------------lkkg~WT~ 71 (338)
+|++++|-+|+.+|..-. +-..|++.+. ..-|-+.+.+||+..|. |. ..+.+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 599999999999998765 4666665433 23455567789987653 22 23568999
Q ss_pred HHHHHHHHHHHHcCC---CHHHHHh----hC-CCCCHHHHHHHHHHHhhhH
Q 039070 72 QEERIIIDIHRILGN---RWAQIAK----HL-PGRTDNEVKNFWNSCIKKK 114 (338)
Q Consensus 72 EEDe~Ll~lv~~~G~---kWs~IA~----~L-pgRT~~qcKnRW~slLkkk 114 (338)
+|+++|........+ .+.+|=. .+ ++||+.++.++|+.+.+..
T Consensus 79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~ 129 (199)
T PF13325_consen 79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYH 129 (199)
T ss_pred HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhc
Confidence 999999998766654 3666633 23 8899999999998655443
No 31
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.69 E-value=0.0022 Score=66.79 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=42.8
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 039070 65 KRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSC 110 (338)
Q Consensus 65 kkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~sl 110 (338)
-++.||.+|..+|++++..||.+|.+||.++.+||..+|-.|+..+
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence 4578999999999999999999999999999999999999999653
No 32
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.69 E-value=0.002 Score=66.18 Aligned_cols=45 Identities=16% Similarity=0.395 Sum_probs=41.9
Q ss_pred CCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 039070 66 RGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSC 110 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~sl 110 (338)
...||.+|..+|++.+..||..|.+||+|+++||..||--||-++
T Consensus 279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 348999999999999999999999999999999999999999653
No 33
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=96.45 E-value=0.0037 Score=56.80 Aligned_cols=53 Identities=15% Similarity=0.345 Sum_probs=43.8
Q ss_pred CCCCCCChHHHHHHHHHHHHcCC----C---HHHHHhhCCCCCHHHHHHHHHHHhhhHHHh
Q 039070 64 LKRGSFTEQEERIIIDIHRILGN----R---WAQIAKHLPGRTDNEVKNFWNSCIKKKLIA 117 (338)
Q Consensus 64 lkkg~WT~EEDe~Ll~lv~~~G~----k---Ws~IA~~LpgRT~~qcKnRW~slLkkkl~~ 117 (338)
.+.+.||.|+|.+|.+.|..|+. + ...++..| +||..+|..|||..+|+++..
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee 62 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQE 62 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHH
Confidence 35679999999999998888863 2 56667788 999999999999999987543
No 34
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.45 E-value=0.00081 Score=69.00 Aligned_cols=46 Identities=22% Similarity=0.536 Sum_probs=42.7
Q ss_pred CccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecc
Q 039070 12 KRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59 (338)
Q Consensus 12 kkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~ 59 (338)
....||.+|..+|+++|+.||. +|.+||+++| +|+..||..|+.+.
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg-tKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVG-TKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence 5669999999999999999995 9999999999 99999999998763
No 35
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.22 E-value=0.0016 Score=67.83 Aligned_cols=48 Identities=21% Similarity=0.558 Sum_probs=43.6
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecc
Q 039070 10 KVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59 (338)
Q Consensus 10 ~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~ 59 (338)
..-++.||.+|+.+|+++|+.||. +|.+||.++| .|+..||..++.+.
T Consensus 250 ~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg-~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 250 ESARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG-TKSQEQCILKFLRL 297 (506)
T ss_pred ccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC-CCCHHHHHHHHHhc
Confidence 345788999999999999999995 9999999999 99999999998763
No 36
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.11 E-value=0.0017 Score=50.23 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=33.2
Q ss_pred ccCCCHHHHHHHHHHHHHhCC------CC--cccccccccccccCccccceeecccCCCC
Q 039070 13 RGLWSPEEDEKLIKHVTTHGH------GS--WSSVPKLAGLQRCGKSCRLRWINYLRPDL 64 (338)
Q Consensus 13 kg~WT~EEDe~L~~lV~k~G~------~n--W~~IAk~lg~~Rt~kQCr~RW~n~L~p~l 64 (338)
|.+||.|||+.|+++|..+.. || |.++++..+..++..+-|+||.+.|.+..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 568999999999999976531 33 99999877668999999999999887643
No 37
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.68 E-value=0.029 Score=43.45 Aligned_cols=48 Identities=25% Similarity=0.533 Sum_probs=40.1
Q ss_pred CCCCChHHHHHHHHHHHHcC-----------------CCHHHHHhhC-----CCCCHHHHHHHHHHHhhh
Q 039070 66 RGSFTEQEERIIIDIHRILG-----------------NRWAQIAKHL-----PGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G-----------------~kWs~IA~~L-----pgRT~~qcKnRW~slLkk 113 (338)
+..||.+|.+.|++++.+|. .-|..|+..| +.||..+++.+|.++...
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK 71 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 45799999999999998872 1399999976 369999999999987654
No 38
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.61 E-value=0.003 Score=56.80 Aligned_cols=50 Identities=30% Similarity=0.630 Sum_probs=42.7
Q ss_pred CCccCCCHHHHHHHHHHHHHhCC-C-----CcccccccccccccCccccceeecccCC
Q 039070 11 VKRGLWSPEEDEKLIKHVTTHGH-G-----SWSSVPKLAGLQRCGKSCRLRWINYLRP 62 (338)
Q Consensus 11 lkkg~WT~EEDe~L~~lV~k~G~-~-----nW~~IAk~lg~~Rt~kQCr~RW~n~L~p 62 (338)
.+...||.|||.+|.+.|-+|-. | .+.+|++.++ ||+..|.-||..+++.
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk 57 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK 57 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence 56788999999999999999832 2 3889999886 9999999999988763
No 39
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.11 E-value=0.0048 Score=61.04 Aligned_cols=50 Identities=20% Similarity=0.510 Sum_probs=45.6
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccC
Q 039070 11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR 61 (338)
Q Consensus 11 lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~ 61 (338)
+----|+..|+-+|++.....|-|||..||.++| .|....|+++|.+++.
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~ 110 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD 110 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence 3345699999999999999999999999999999 9999999999988765
No 40
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=94.70 E-value=0.0053 Score=48.22 Aligned_cols=47 Identities=28% Similarity=0.587 Sum_probs=31.7
Q ss_pred ccCCCHHHHHHHHHHHHHh------C--CC-----Ccccccccc---cccccCccccceeecc
Q 039070 13 RGLWSPEEDEKLIKHVTTH------G--HG-----SWSSVPKLA---GLQRCGKSCRLRWINY 59 (338)
Q Consensus 13 kg~WT~EEDe~L~~lV~k~------G--~~-----nW~~IAk~l---g~~Rt~kQCr~RW~n~ 59 (338)
|..||.+|...|++++... + .. -|..||..| |..|++.||+.+|.+.
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L 63 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL 63 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4579999999999999872 1 11 399999854 5679999999999874
No 41
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=94.62 E-value=0.051 Score=61.27 Aligned_cols=100 Identities=16% Similarity=0.297 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccc-------eeecc----------------------------
Q 039070 15 LWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRL-------RWINY---------------------------- 59 (338)
Q Consensus 15 ~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~-------RW~n~---------------------------- 59 (338)
.||.-+=..++.+..+||..+...||..++ +++...++. ||...
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~ 904 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG 904 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888888888999999888889998886 677666552 22110
Q ss_pred --------------c-CCCCCCCCCChHHHHHHHHHHHHcC-CCHHHHHh------------hCCCCCHHHHHHHHHHHh
Q 039070 60 --------------L-RPDLKRGSFTEQEERIIIDIHRILG-NRWAQIAK------------HLPGRTDNEVKNFWNSCI 111 (338)
Q Consensus 60 --------------L-~p~lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~------------~LpgRT~~qcKnRW~slL 111 (338)
+ .+..++..||+|||..|+-.+.+|| .+|.+|-. .+..||+.++..|-++++
T Consensus 905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~ 984 (1033)
T PLN03142 905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI 984 (1033)
T ss_pred HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence 0 1233345699999999999999999 67999844 236899999999999998
Q ss_pred hhHH
Q 039070 112 KKKL 115 (338)
Q Consensus 112 kkkl 115 (338)
+-..
T Consensus 985 ~~~~ 988 (1033)
T PLN03142 985 RLIE 988 (1033)
T ss_pred HHHH
Confidence 7543
No 42
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.51 E-value=0.045 Score=54.37 Aligned_cols=46 Identities=24% Similarity=0.483 Sum_probs=42.0
Q ss_pred CCCCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHh
Q 039070 66 RGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCI 111 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slL 111 (338)
-..|+.+|+-+|++...-+| ++|..||.+++.|+..+||.||..+.
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y 109 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMY 109 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 45799999999999999999 78999999999999999999996654
No 43
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=93.35 E-value=0.014 Score=53.03 Aligned_cols=50 Identities=26% Similarity=0.512 Sum_probs=40.2
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCCC------cccccccccccccCccccceeecccC
Q 039070 10 KVKRGLWSPEEDEKLIKHVTTHGHGS------WSSVPKLAGLQRCGKSCRLRWINYLR 61 (338)
Q Consensus 10 ~lkkg~WT~EEDe~L~~lV~k~G~~n------W~~IAk~lg~~Rt~kQCr~RW~n~L~ 61 (338)
+.++..||.|||.+|.+.|-+|+... ...++..+. |+..+|..||..+++
T Consensus 2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr 57 (170)
T PRK13923 2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR 57 (170)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence 45788999999999999999987532 566667765 999999999965554
No 44
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=92.31 E-value=0.29 Score=48.11 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=40.1
Q ss_pred CCCCChHHHHHHHHHHHHc----------CCCHHHHHhhC----CCCCHHHHHHHHHHHhhhH
Q 039070 66 RGSFTEQEERIIIDIHRIL----------GNRWAQIAKHL----PGRTDNEVKNFWNSCIKKK 114 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~----------G~kWs~IA~~L----pgRT~~qcKnRW~slLkkk 114 (338)
...|+.+|-..||++..+. +..|..||+.+ --||+.+||.+|.++.++.
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y 116 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY 116 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999987643 34599999965 3599999999999977654
No 45
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=92.10 E-value=0.29 Score=42.02 Aligned_cols=51 Identities=25% Similarity=0.482 Sum_probs=40.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCC----CHHHHHhh------------CCCCCHHHHHHHHHHHhhh
Q 039070 63 DLKRGSFTEQEERIIIDIHRILGN----RWAQIAKH------------LPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 63 ~lkkg~WT~EEDe~Ll~lv~~~G~----kWs~IA~~------------LpgRT~~qcKnRW~slLkk 113 (338)
..++..||++||..|+-++.+||- .|..|-.. +..||+.++..|-+++++-
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 456779999999999999999996 69888652 3679999999999999874
No 46
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=92.04 E-value=0.44 Score=37.74 Aligned_cols=46 Identities=30% Similarity=0.548 Sum_probs=35.7
Q ss_pred CCChHHHHHHHHHHHHc---CC----------CHHHHHhhC-----CCCCHHHHHHHHHHHhhh
Q 039070 68 SFTEQEERIIIDIHRIL---GN----------RWAQIAKHL-----PGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 68 ~WT~EEDe~Ll~lv~~~---G~----------kWs~IA~~L-----pgRT~~qcKnRW~slLkk 113 (338)
.||+++++.|++++.+. |+ .|..|++.| ...|..+|++||..+.+.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 59999999999987543 22 299999877 234789999999876654
No 47
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=91.73 E-value=0.027 Score=43.55 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=38.2
Q ss_pred CccCCCHHHHHHHHHHHHHhCC----------------CCcccccccc----cccccCccccceeeccc
Q 039070 12 KRGLWSPEEDEKLIKHVTTHGH----------------GSWSSVPKLA----GLQRCGKSCRLRWINYL 60 (338)
Q Consensus 12 kkg~WT~EEDe~L~~lV~k~G~----------------~nW~~IAk~l----g~~Rt~kQCr~RW~n~L 60 (338)
++..||.+|.+.|+++|.+|.. .-|..|+..+ |..|+..|++.+|.+..
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999832 1399999744 22689999999998753
No 48
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=89.37 E-value=0.26 Score=50.12 Aligned_cols=85 Identities=24% Similarity=0.358 Sum_probs=64.4
Q ss_pred CcccccccccccccCccccceeecccCCC-------------------------CCCCCCChHHHHHHHHHHHHcCCCHH
Q 039070 35 SWSSVPKLAGLQRCGKSCRLRWINYLRPD-------------------------LKRGSFTEQEERIIIDIHRILGNRWA 89 (338)
Q Consensus 35 nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~-------------------------lkkg~WT~EEDe~Ll~lv~~~G~kWs 89 (338)
.|.-++=..+ -|...--..||.+..++. ++...||.+|-.-|+++++.|--+|-
T Consensus 75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~ 153 (445)
T KOG2656|consen 75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF 153 (445)
T ss_pred CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence 4665554333 566666677787763321 23457999999999999999999999
Q ss_pred HHHhh-----CCC-CCHHHHHHHHHHHhhhHHHhCCC
Q 039070 90 QIAKH-----LPG-RTDNEVKNFWNSCIKKKLIARGI 120 (338)
Q Consensus 90 ~IA~~-----Lpg-RT~~qcKnRW~slLkkkl~~~g~ 120 (338)
-||.. ++. ||-.++|.||+..-++-++.+.-
T Consensus 154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~ 190 (445)
T KOG2656|consen 154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAP 190 (445)
T ss_pred EEeeccchhhccccccHHHHHHHHHHHHHHHHHccCC
Confidence 99987 555 99999999999988887766543
No 49
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=89.26 E-value=0.61 Score=47.52 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=43.0
Q ss_pred CCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 67 GSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 67 g~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
.+||.+|-++..++...+|..++.||..+|.|...|||-+|..--|+
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~ 412 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV 412 (507)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence 47999999999999999999999999999999999999999765443
No 50
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=89.07 E-value=1.2 Score=31.82 Aligned_cols=42 Identities=29% Similarity=0.366 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 71 EQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 71 ~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
++++..++.++...|-.|.+||+.+ |.|...|+.+....+++
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~ 53 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK 53 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence 5678889999999999999999999 99999999998776653
No 51
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=81.73 E-value=3.2 Score=43.31 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=43.8
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 65 KRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 65 kkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
-...||.||--++-++...||.++.+|-+.||.|+-..+..+|+...|.
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~ 234 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKT 234 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999988776543
No 52
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=79.56 E-value=1.4 Score=37.78 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=28.5
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCC---CCcccccccc
Q 039070 10 KVKRGLWSPEEDEKLIKHVTTHGH---GSWSSVPKLA 43 (338)
Q Consensus 10 ~lkkg~WT~EEDe~L~~lV~k~G~---~nW~~IAk~l 43 (338)
..+++.||.+||.-|+-++.+||. +.|..|-..+
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I 82 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI 82 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 667889999999999999999999 8899988644
No 53
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=75.13 E-value=8.8 Score=27.02 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 72 QEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 72 EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+++..++.++--.|-.+.+||+.+ |-|...|+.+-+..+++
T Consensus 7 ~~er~vi~~~y~~~~t~~eIa~~l-g~s~~~V~~~~~~al~k 47 (50)
T PF04545_consen 7 PREREVIRLRYFEGLTLEEIAERL-GISRSTVRRILKRALKK 47 (50)
T ss_dssp HHHHHHHHHHHTST-SHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-CCcHHHHHHHHHHHHHH
Confidence 566677777776777899999999 89999999998887765
No 54
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=74.45 E-value=8.3 Score=27.07 Aligned_cols=38 Identities=24% Similarity=0.408 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCC-HHHHHhhCCCCCHHHHHHHHHHH
Q 039070 72 QEERIIIDIHRILGNR-WAQIAKHLPGRTDNEVKNFWNSC 110 (338)
Q Consensus 72 EEDe~Ll~lv~~~G~k-Ws~IA~~LpgRT~~qcKnRW~sl 110 (338)
+=|.+|+.+...-|.. |..||+.+ |=|...|..|++.+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHHh
Confidence 4578899999988864 99999999 99999999999764
No 55
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=73.47 E-value=5.6 Score=42.90 Aligned_cols=51 Identities=18% Similarity=0.449 Sum_probs=42.0
Q ss_pred CCCCChHHHHHHHHHHHHcCCCHHHHH----------hhCCCCCHHHHHHHHHHHhhhHHH
Q 039070 66 RGSFTEQEERIIIDIHRILGNRWAQIA----------KHLPGRTDNEVKNFWNSCIKKKLI 116 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G~kWs~IA----------~~LpgRT~~qcKnRW~slLkkkl~ 116 (338)
|..||-+|++-...+++++|.++.+|- ....-+|-.+++.+|+..+++..+
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k 148 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNK 148 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHh
Confidence 668999999999999999999998882 233456888999999988877543
No 56
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=72.73 E-value=3.4 Score=33.20 Aligned_cols=23 Identities=39% Similarity=0.868 Sum_probs=14.1
Q ss_pred CCCccCCCHHHHHHH--------HHHHHHhC
Q 039070 10 KVKRGLWSPEEDEKL--------IKHVTTHG 32 (338)
Q Consensus 10 ~lkkg~WT~EEDe~L--------~~lV~k~G 32 (338)
.-..|-||+|+|+.| .+++++||
T Consensus 44 ~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG 74 (87)
T PF11626_consen 44 DNMPGIWTPEDDEMLRSGDKDDIERLIKKHG 74 (87)
T ss_dssp TT-TT---HHHHHHHTS--HHHHHHHHHHH-
T ss_pred CCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC
Confidence 345789999999999 45667887
No 57
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=72.05 E-value=6.2 Score=34.39 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHH
Q 039070 71 EQEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSCIKKKLI 116 (338)
Q Consensus 71 ~EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~slLkkkl~ 116 (338)
.+-|.+|+++.++-|. .|++||+.+ |-|...|+.|++.+....+.
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~GvI 53 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAGII 53 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 4578899999988885 599999999 99999999999887765443
No 58
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Probab=70.05 E-value=12 Score=31.24 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 74 ERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 74 De~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+..++.+....|-.+.+||+.+ |.+...|+.+....+++
T Consensus 118 ~r~il~l~~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~ 156 (161)
T TIGR02985 118 CRKIFILSRFEGKSYKEIAEEL-GISVKTVEYHISKALKE 156 (161)
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3344444445577899999999 99999999999886544
No 59
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=68.42 E-value=1.4 Score=43.34 Aligned_cols=47 Identities=30% Similarity=0.487 Sum_probs=37.5
Q ss_pred ccCCCHHHHHHHHHHHHHh----CCC-----Ccccccc---cccccccCccccceeecc
Q 039070 13 RGLWSPEEDEKLIKHVTTH----GHG-----SWSSVPK---LAGLQRCGKSCRLRWINY 59 (338)
Q Consensus 13 kg~WT~EEDe~L~~lV~k~----G~~-----nW~~IAk---~lg~~Rt~kQCr~RW~n~ 59 (338)
...|+.+|-..|+++..+. ..+ -|..||+ ..|..|++.||+.+|.+.
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl 112 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENL 112 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3789999999999988744 112 4999998 445679999999999874
No 60
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=67.74 E-value=21 Score=35.94 Aligned_cols=48 Identities=25% Similarity=0.549 Sum_probs=38.0
Q ss_pred CCCCChHHHHHHHHHHHHc-CCC---HHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 66 RGSFTEQEERIIIDIHRIL-GNR---WAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~-G~k---Ws~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
-..||..|...|+++.+.. |.. -..|++.++||+..+|++.-+.+..+
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~r 72 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGR 72 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHH
Confidence 3579999999999887655 543 57899999999999999977655443
No 61
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=67.45 E-value=11 Score=41.72 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=42.0
Q ss_pred CCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070 66 RGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIK 112 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLk 112 (338)
...||+.|-.+.-+++..|..++-.|++.++++|-.+|-.+|++..|
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWKK 665 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWKK 665 (907)
T ss_pred cccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999887765443
No 62
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=65.71 E-value=8.1 Score=34.13 Aligned_cols=45 Identities=13% Similarity=0.176 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHH
Q 039070 71 EQEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSCIKKKLI 116 (338)
Q Consensus 71 ~EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~slLkkkl~ 116 (338)
.+-|.+|+.+.++-|. .|++||+.+ |=|...|+.|++.+.+..+.
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~GvI 58 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGFI 58 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 5678899998888885 599999999 99999999999887765443
No 63
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=63.32 E-value=3.7 Score=42.03 Aligned_cols=68 Identities=24% Similarity=0.349 Sum_probs=53.2
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecc--cCCC------CCCCCCChHHHHHHH
Q 039070 9 QKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY--LRPD------LKRGSFTEQEERIII 78 (338)
Q Consensus 9 ~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~--L~p~------lkkg~WT~EEDe~Ll 78 (338)
++..--+||.+|-++..+++...|. ++.-|+..+| .|..+|+...|.+- .+|. ..+-++..+|..++.
T Consensus 361 ~~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP-~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY~k~~ 436 (507)
T COG5118 361 KKKGALRWSKKEIEKFYKALSIWGT-DFSLISSLFP-NRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEYNKLR 436 (507)
T ss_pred CCCCCCcccHHHHHHHHHHHHHhcc-hHHHHHHhcC-chhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHHhhHH
Confidence 3445568999999999999999997 9999999998 99999999988763 2331 124577777776543
No 64
>smart00595 MADF subfamily of SANT domain.
Probab=63.11 E-value=11 Score=29.40 Aligned_cols=24 Identities=33% Similarity=0.677 Sum_probs=21.1
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070 88 WAQIAKHLPGRTDNEVKNFWNSCIK 112 (338)
Q Consensus 88 Ws~IA~~LpgRT~~qcKnRW~slLk 112 (338)
|.+||..| |-|..+|+.+|+++..
T Consensus 30 W~~Ia~~l-~~~~~~~~~kw~~LR~ 53 (89)
T smart00595 30 WEEIAEEL-GLSVEECKKRWKNLRD 53 (89)
T ss_pred HHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 99999999 5599999999988654
No 65
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=61.27 E-value=14 Score=37.83 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=39.9
Q ss_pred CCCChHHHHHHHHHHHHcCCCHHHHHh-hCCCCCHHHHHHHHHHHhh
Q 039070 67 GSFTEQEERIIIDIHRILGNRWAQIAK-HLPGRTDNEVKNFWNSCIK 112 (338)
Q Consensus 67 g~WT~EEDe~Ll~lv~~~G~kWs~IA~-~LpgRT~~qcKnRW~slLk 112 (338)
..||++|.....+..+.||.++..|-+ +++.|+--.|-.+|+...|
T Consensus 278 ~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlWKk 324 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLWKK 324 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHhhc
Confidence 479999999999999999999999965 6899999999887765443
No 66
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=57.97 E-value=2.1 Score=30.11 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhCCCCcccccccccccccCccccceeec
Q 039070 19 EEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWIN 58 (338)
Q Consensus 19 EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n 58 (338)
+=|.+|+.+++..|...|.+||+.+| -+...|+.|+.+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~lg--lS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEELG--LSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHHT--S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHC--cCHHHHHHHHHH
Confidence 45889999999999889999999998 677778877643
No 67
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=56.18 E-value=16 Score=32.88 Aligned_cols=41 Identities=24% Similarity=0.247 Sum_probs=34.6
Q ss_pred CCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHH
Q 039070 68 SFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNS 109 (338)
Q Consensus 68 ~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~s 109 (338)
.||+|+.++|.+|. .-|-.=++||+.|.|.|.++|.-+-+.
T Consensus 2 ~Wtde~~~~L~~lw-~~G~SasqIA~~lg~vsRnAViGk~hR 42 (162)
T PF07750_consen 2 SWTDERVERLRKLW-AEGLSASQIARQLGGVSRNAVIGKAHR 42 (162)
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHhCCcchhhhhhhhhc
Confidence 59999999999988 457778999999977999999876554
No 68
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=56.11 E-value=27 Score=28.03 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 76 IIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 76 ~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
.++.++...|..+..||+.+ |=+...|+++.+..+++
T Consensus 117 ~ii~~~~~~g~s~~eIA~~l-~~s~~~v~~~~~~~~~k 153 (158)
T TIGR02937 117 EVLVLRYLEGLSYKEIAEIL-GISVGTVKRRLKRARKK 153 (158)
T ss_pred HHHhhHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 33344445688899999999 77999999998886554
No 69
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=53.99 E-value=3.4 Score=36.04 Aligned_cols=45 Identities=9% Similarity=0.172 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCC
Q 039070 19 EEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLK 65 (338)
Q Consensus 19 EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lk 65 (338)
+-|.+|++++++.|.-.|.+||+.+| -+...|+.|+.+....++-
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~lg--lS~~tV~~Ri~rL~~~GvI 53 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQFG--VSPGTIHVRVEKMKQAGII 53 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCe
Confidence 57999999999999889999999998 8888999998876555443
No 70
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=53.69 E-value=31 Score=29.37 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=26.2
Q ss_pred HHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 80 IHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 80 lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+....|-.+..||+.| |.+...|+.+....+++
T Consensus 139 l~~~~~~s~~eIA~~l-gis~~tV~~~l~ra~~~ 171 (182)
T PRK09652 139 LREIEGLSYEEIAEIM-GCPIGTVRSRIFRAREA 171 (182)
T ss_pred HHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3344577899999999 89999999988765544
No 71
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=51.81 E-value=5.8 Score=31.25 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHHHh
Q 039070 15 LWSPEEDEKLIKHVTTH 31 (338)
Q Consensus 15 ~WT~EEDe~L~~lV~k~ 31 (338)
.||+++++.|++++...
T Consensus 1 ~Wt~~~~~~ll~~~~e~ 17 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQ 17 (96)
T ss_pred CCChHHHHHHHHHHHHH
Confidence 59999999999988654
No 72
>PRK11924 RNA polymerase sigma factor; Provisional
Probab=51.77 E-value=33 Score=29.08 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=26.1
Q ss_pred HHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 80 IHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 80 lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+....|-....||+.| |-|...|++++...+++
T Consensus 136 l~~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~ 168 (179)
T PRK11924 136 LRYVEGLSYREIAEIL-GVPVGTVKSRLRRARQL 168 (179)
T ss_pred HHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3344577899999999 99999999998775543
No 73
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=49.41 E-value=25 Score=28.30 Aligned_cols=29 Identities=24% Similarity=0.587 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCCHHHHHhhCCCCCHHHH
Q 039070 74 ERIIIDIHRILGNRWAQIAKHLPGRTDNEV 103 (338)
Q Consensus 74 De~Ll~lv~~~G~kWs~IA~~LpgRT~~qc 103 (338)
|+.|..+....|..|..+|.+| |=|..+|
T Consensus 2 ~~~L~~la~~LG~~W~~Lar~L-gls~~~I 30 (83)
T cd08319 2 DRELNQLAQRLGPEWEQVLLDL-GLSQTDI 30 (83)
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 5678899999999999999998 5554443
No 74
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=49.25 E-value=17 Score=39.06 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=43.8
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070 64 LKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIK 112 (338)
Q Consensus 64 lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLk 112 (338)
...++||..|-++...+..+.|.+.+.||..+++|...+||.++..-=+
T Consensus 407 ~~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~eE~ 455 (584)
T KOG2009|consen 407 LETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKEEK 455 (584)
T ss_pred cccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhhhh
Confidence 3457899999999999999999999999999999999999999865433
No 75
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=48.94 E-value=32 Score=28.36 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=33.9
Q ss_pred CCChHHHHHHHHHHHHc----C----CCHHHHHhhCCC-----CCHHHHHHHHHHHhhhH
Q 039070 68 SFTEQEERIIIDIHRIL----G----NRWAQIAKHLPG-----RTDNEVKNFWNSCIKKK 114 (338)
Q Consensus 68 ~WT~EEDe~Ll~lv~~~----G----~kWs~IA~~Lpg-----RT~~qcKnRW~slLkkk 114 (338)
-||+++|-.|++.+..| | ..|..+-..+.+ =+..|+.++-+.+.++-
T Consensus 6 ~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky 65 (98)
T PF04504_consen 6 LWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKY 65 (98)
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 59999999999988776 6 346655544422 37889988888766553
No 76
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=48.84 E-value=3.5 Score=36.46 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCC
Q 039070 18 PEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDL 64 (338)
Q Consensus 18 ~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~l 64 (338)
.+-|.+|+.+.++.|.-.|.+||+.+| -+...|+.|+.+..+.++
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lg--lS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVG--LSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 567999999999999889999999998 778889998877655544
No 77
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=48.73 E-value=46 Score=26.22 Aligned_cols=37 Identities=14% Similarity=0.343 Sum_probs=27.2
Q ss_pred HHHHHHHHcC--------CCHHHHHhhCCC---CC--HHHHHHHHHHHhh
Q 039070 76 IIIDIHRILG--------NRWAQIAKHLPG---RT--DNEVKNFWNSCIK 112 (338)
Q Consensus 76 ~Ll~lv~~~G--------~kWs~IA~~Lpg---RT--~~qcKnRW~slLk 112 (338)
+|..+|.+.| .+|..||+.|.- -+ ..++|..|..+|.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~ 89 (92)
T PF01388_consen 40 KLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLL 89 (92)
T ss_dssp HHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhH
Confidence 3778888887 369999999822 12 3678888888764
No 78
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=48.51 E-value=35 Score=32.02 Aligned_cols=45 Identities=11% Similarity=0.216 Sum_probs=34.7
Q ss_pred CCChHHHHHHHHHHHHcCCCHHHHHhhC---CCCCHHHHHHHHHHHhhh
Q 039070 68 SFTEQEERIIIDIHRILGNRWAQIAKHL---PGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 68 ~WT~EEDe~Ll~lv~~~G~kWs~IA~~L---pgRT~~qcKnRW~slLkk 113 (338)
+|++++|-.|+.+|.. |+.-..|+.-+ -.-|-.+|..||+.+|--
T Consensus 1 rW~~~DDl~Li~av~~-~~~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd 48 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQ-TNDLESVHLGVKFSCKFTLQEIEERWYALLYD 48 (199)
T ss_pred CCCchhhHHHHHHHHH-hcCHHHHHccCCcCCcCcHHHHHHHHHHHHcC
Confidence 5999999999998854 55566666543 345889999999999853
No 79
>PF07638 Sigma70_ECF: ECF sigma factor
Probab=48.24 E-value=41 Score=30.00 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHh
Q 039070 73 EERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCI 111 (338)
Q Consensus 73 EDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slL 111 (338)
+...++.+..-.|-.+.+||+.| |-|...|+.+|....
T Consensus 139 ~~~~~v~l~~~~Gls~~EIA~~l-giS~~tV~r~l~~aR 176 (185)
T PF07638_consen 139 RQRRVVELRFFEGLSVEEIAERL-GISERTVRRRLRRAR 176 (185)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 33445555556688999999999 999999999998755
No 80
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=47.99 E-value=31 Score=27.80 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCCHHHHHhhCCCCCHHHHH
Q 039070 74 ERIIIDIHRILGNRWAQIAKHLPGRTDNEVK 104 (338)
Q Consensus 74 De~Ll~lv~~~G~kWs~IA~~LpgRT~~qcK 104 (338)
|..|..+....|..|.++|+.| |=+...|.
T Consensus 4 d~~l~~ia~~LG~dW~~LA~eL-g~s~~dI~ 33 (84)
T cd08803 4 DIRMAIVADHLGLSWTELAREL-NFSVDEIN 33 (84)
T ss_pred HHHHHHHHHHhhccHHHHHHHc-CCCHHHHH
Confidence 6778889999999999999999 66665543
No 81
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=47.13 E-value=66 Score=21.19 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=29.4
Q ss_pred CChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHh
Q 039070 69 FTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCI 111 (338)
Q Consensus 69 WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slL 111 (338)
.+++ +..++.++..-|-.+..||+.+ |=+...|+.+.....
T Consensus 11 l~~~-~~~~~~~~~~~~~~~~~ia~~~-~~s~~~i~~~~~~~~ 51 (55)
T cd06171 11 LPER-EREVILLRFGEGLSYEEIAEIL-GISRSTVRQRLHRAL 51 (55)
T ss_pred CCHH-HHHHHHHHHhcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 4443 4556666666778899999998 788888877765543
No 82
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=47.12 E-value=38 Score=27.16 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHHh
Q 039070 72 QEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSCIKKKLIA 117 (338)
Q Consensus 72 EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~ 117 (338)
+.|.+|+.+..+.|. .++.||+.+ |-+...|+.+.+.+.+..+..
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l-~~s~~tv~~~l~~L~~~g~i~ 48 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKV-GLSPSTVHNRVKRLEEEGVIK 48 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 568888898888874 599999999 999999999998877655443
No 83
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=46.77 E-value=32 Score=31.63 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=37.0
Q ss_pred CCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 67 GSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 67 g~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
...|+.|-+.|.-+.+=+. =++||..| +.|...||+|..++++|
T Consensus 147 ~~LT~RE~eVL~lla~G~s--nkeIA~~L-~iS~~TVk~h~~~i~~K 190 (211)
T COG2197 147 ELLTPRELEVLRLLAEGLS--NKEIAEEL-NLSEKTVKTHVSNILRK 190 (211)
T ss_pred CCCCHHHHHHHHHHHCCCC--HHHHHHHH-CCCHhHHHHHHHHHHHH
Confidence 4789999888776665444 48999999 99999999999999987
No 84
>PF11427 HTH_Tnp_Tc3_1: Tc3 transposase; PDB: 1U78_A 1TC3_C.
Probab=46.69 E-value=40 Score=24.91 Aligned_cols=36 Identities=22% Similarity=0.489 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHH
Q 039070 71 EQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFW 107 (338)
Q Consensus 71 ~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW 107 (338)
.++|+..+.++.+.|-.=.+||+.+ ||+.+.|+++-
T Consensus 6 t~~Eqaqid~m~qlG~s~~~isr~i-~RSr~~Ir~yl 41 (50)
T PF11427_consen 6 TDAEQAQIDVMHQLGMSLREISRRI-GRSRTCIRRYL 41 (50)
T ss_dssp -HHHHHHHHHHHHTT--HHHHHHHH-T--HHHHHHHH
T ss_pred CHHHHHHHHHHHHhchhHHHHHHHh-CccHHHHHHHh
Confidence 3567778889999999999999999 99999888764
No 85
>PRK09641 RNA polymerase sigma factor SigW; Provisional
Probab=46.29 E-value=44 Score=28.89 Aligned_cols=30 Identities=17% Similarity=0.021 Sum_probs=24.7
Q ss_pred HcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 83 ILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 83 ~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..|..+.+||+.+ |-|...|+++.....++
T Consensus 150 ~~~~s~~eIA~~l-gis~~~v~~~l~Rar~~ 179 (187)
T PRK09641 150 IEDLSLKEISEIL-DLPVGTVKTRIHRGREA 179 (187)
T ss_pred hhCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467799999999 99999999998776554
No 86
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=45.92 E-value=47 Score=29.51 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=25.9
Q ss_pred HHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 80 IHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 80 lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+....|-...+||..| |-+...|+.|+...+++
T Consensus 145 l~~~~g~s~~EIA~~l-g~s~~tV~~rl~rar~~ 177 (192)
T PRK09643 145 AVDMQGYSVADAARML-GVAEGTVKSRCARGRAR 177 (192)
T ss_pred HHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3344577899999999 99999999999665443
No 87
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=45.61 E-value=53 Score=26.20 Aligned_cols=38 Identities=13% Similarity=0.354 Sum_probs=28.4
Q ss_pred HHHHHHHHcCC--------CHHHHHhhCCC-----CCHHHHHHHHHHHhhh
Q 039070 76 IIIDIHRILGN--------RWAQIAKHLPG-----RTDNEVKNFWNSCIKK 113 (338)
Q Consensus 76 ~Ll~lv~~~G~--------kWs~IA~~Lpg-----RT~~qcKnRW~slLkk 113 (338)
+|..+|.+.|+ +|..||+.|.- ....++|..|...|..
T Consensus 36 ~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~ 86 (93)
T smart00501 36 RLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLP 86 (93)
T ss_pred HHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHH
Confidence 37777888873 69999999832 2357789988888764
No 88
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=44.65 E-value=27 Score=27.61 Aligned_cols=29 Identities=31% Similarity=0.774 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCCHHHHHhhCCCCCHHHH
Q 039070 74 ERIIIDIHRILGNRWAQIAKHLPGRTDNEV 103 (338)
Q Consensus 74 De~Ll~lv~~~G~kWs~IA~~LpgRT~~qc 103 (338)
|..|..+.+..|.+|.++|++| |=+..+|
T Consensus 4 ~~~l~~ia~~lG~dW~~LAr~L-g~~~~dI 32 (84)
T cd08317 4 DIRLADISNLLGSDWPQLAREL-GVSETDI 32 (84)
T ss_pred cchHHHHHHHHhhHHHHHHHHc-CCCHHHH
Confidence 4568888999999999999999 5555444
No 89
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=44.12 E-value=7.9 Score=42.66 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=39.4
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeec
Q 039070 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWIN 58 (338)
Q Consensus 13 kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n 58 (338)
...||+-|-.+..+++..|. .++..|++++. +++.+||-+-|..
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~-KDF~~v~km~~-~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYS-KDFIFVQKMVK-SKTVAQCVEYYYT 662 (907)
T ss_pred cccccHHHHHHHHHHHHHhc-ccHHHHHHHhc-cccHHHHHHHHHH
Confidence 35799999999999999999 49999999998 9999999887653
No 90
>PRK04217 hypothetical protein; Provisional
Probab=43.17 E-value=63 Score=27.49 Aligned_cols=45 Identities=20% Similarity=0.087 Sum_probs=36.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 67 GSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 67 g~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..-|++| ..++.+....|-...+||+.+ |-+...|+.+++...++
T Consensus 41 ~~Lt~ee-reai~l~~~eGlS~~EIAk~L-GIS~sTV~r~L~RArkk 85 (110)
T PRK04217 41 IFMTYEE-FEALRLVDYEGLTQEEAGKRM-GVSRGTVWRALTSARKK 85 (110)
T ss_pred ccCCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3456666 677788888888999999999 99999999999876544
No 91
>PRK12523 RNA polymerase sigma factor; Reviewed
Probab=42.68 E-value=84 Score=27.12 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=30.0
Q ss_pred HHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHH
Q 039070 77 IIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLI 116 (338)
Q Consensus 77 Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~ 116 (338)
++.+....|-...+||+.+ |-+...|+.+-...+++-..
T Consensus 127 v~~L~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~~~~ 165 (172)
T PRK12523 127 AFLYNRLDGMGHAEIAERL-GVSVSRVRQYLAQGLRQCYI 165 (172)
T ss_pred HHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 3334445577899999999 99999999998887776433
No 92
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.
Probab=42.47 E-value=45 Score=28.96 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=24.0
Q ss_pred cCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 84 LGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 84 ~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
.|-...+||+.| |=|...|+++....+++
T Consensus 153 ~~~s~~EIA~~l-gis~~tv~~~l~rar~~ 181 (190)
T TIGR02939 153 EGLSYEDIARIM-DCPVGTVRSRIFRAREA 181 (190)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 356799999999 88999999998776654
No 93
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=42.46 E-value=15 Score=29.51 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=10.2
Q ss_pred CCCCCCCCChHHHHHHH
Q 039070 62 PDLKRGSFTEQEERIII 78 (338)
Q Consensus 62 p~lkkg~WT~EEDe~Ll 78 (338)
|....|-||+|+|+.|.
T Consensus 43 P~n~~GiWT~eDD~~L~ 59 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLR 59 (87)
T ss_dssp -TT-TT---HHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHH
Confidence 66678999999999983
No 94
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=42.11 E-value=29 Score=26.12 Aligned_cols=26 Identities=23% Similarity=0.549 Sum_probs=21.1
Q ss_pred HHHHHhhCCC-CCHHHHHHHHHHHhhh
Q 039070 88 WAQIAKHLPG-RTDNEVKNFWNSCIKK 113 (338)
Q Consensus 88 Ws~IA~~Lpg-RT~~qcKnRW~slLkk 113 (338)
|..||..|.. -+..+|+.+|+++...
T Consensus 29 w~~Ia~~l~~~~~~~~~~~~w~~Lr~~ 55 (85)
T PF10545_consen 29 WQEIARELGKEFSVDDCKKRWKNLRDR 55 (85)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 9999999943 5788999999886643
No 95
>TIGR02954 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Probab=41.73 E-value=59 Score=27.88 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=25.1
Q ss_pred HHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 82 RILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 82 ~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
...|-....||+.| |-|...|++++...+++
T Consensus 132 ~~~g~s~~eiA~~l-gis~~tv~~~l~Ra~~~ 162 (169)
T TIGR02954 132 YYHDLTIKEIAEVM-NKPEGTVKTYLHRALKK 162 (169)
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34466789999999 88999999999876654
No 96
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing control of luminescence. LuxR-type HTH domain proteins occur in a variety of organisms. The DNA-binding HTH domain is usually located in the C-terminal region; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR-type HTH regulators control a wide variety of activities in various biological processes. The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers [, , ]. LuxR-type HTH proteins can be activated by one of four different mechanisms: 1) Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase [, ]. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes in microaerobiosis) Escherichia coli and Salmonella typhimurium uhpA (activates hexose phosphate transport gene uhpT) E. coli narL and narP (activate nitrate reductase operon) Enterobacteria rcsB (regulation of exopolysaccharide biosynthesis in enteric and plant pathogenesis) Bordetella pertussis bvgA (virulence factor) Bacillus subtilis coma (involved in expression of late-expressing competence genes) 2) Regulators which are activated, or in very rare cases repressed, when bound to N-acyl homoserine lactones, which are used as quorum sensing molecules in a variety of Gram-negative bacteria []: V. fischeri luxR (activates bioluminescence operon) Agrobacterium tumefaciens traR (regulation of Ti plasmid transfer) Erwinia carotovora carR (control of carbapenem antibiotics biosynthesis) E. carotovora expR (virulence factor for soft rot disease; activates plant tissue macerating enzyme genes) Pseudomonas aeruginosa lasR (activates elastase gene lasB) Erwinia chrysanthemi echR and Erwinia stewartii esaR Pseudomonas chlororaphis phzR (positive regulator of phenazine antibiotic production) Pseudomonas aeruginosa rhlR (activates rhlAB operon and lasB gene) 3) Autonomous effector domain regulators, without a regulatory domain, represented by gerE []. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation) 4) Multiple ligand-binding regulators, exemplified by malT []. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose); GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3SZT_A 3CLO_A 1H0M_A 1L3L_A 3C57_B 1ZLK_B 1ZLJ_H 3C3W_B 1RNL_A 1ZG1_A ....
Probab=41.05 E-value=36 Score=24.63 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=31.7
Q ss_pred CCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 68 SFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 68 ~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..|+.|-+.|.-+.. |..=.+||..+ |.+...|+.+...+++|
T Consensus 3 ~LT~~E~~vl~~l~~--G~~~~eIA~~l-~is~~tV~~~~~~i~~K 45 (58)
T PF00196_consen 3 SLTERELEVLRLLAQ--GMSNKEIAEEL-GISEKTVKSHRRRIMKK 45 (58)
T ss_dssp SS-HHHHHHHHHHHT--TS-HHHHHHHH-TSHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHh--cCCcchhHHhc-CcchhhHHHHHHHHHHH
Confidence 456777776655543 44558999999 99999999999887765
No 97
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional
Probab=40.85 E-value=58 Score=28.58 Aligned_cols=29 Identities=14% Similarity=0.044 Sum_probs=23.8
Q ss_pred cCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 84 LGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 84 ~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
.|-....||+.| |-|...|+++....+++
T Consensus 153 ~g~s~~eIA~~l-gis~~tv~~~l~Rar~~ 181 (193)
T PRK11923 153 DGLSYEDIASVM-QCPVGTVRSRIFRAREA 181 (193)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 356789999999 88999999998776654
No 98
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=40.68 E-value=96 Score=27.12 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=29.7
Q ss_pred HHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHh
Q 039070 80 IHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIA 117 (338)
Q Consensus 80 lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~ 117 (338)
++...|-...+||+.| |-+...||.|....+++-+..
T Consensus 138 L~~~~g~s~~EIA~~l-gis~~tVk~~l~rAl~~~~~~ 174 (178)
T PRK12529 138 MATLDGMKQKDIAQAL-DIALPTVKKYIHQAYVTCLSL 174 (178)
T ss_pred HHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHh
Confidence 3444577899999999 999999999998888765443
No 99
>PRK09047 RNA polymerase factor sigma-70; Validated
Probab=40.54 E-value=72 Score=26.86 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=24.8
Q ss_pred HHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 82 RILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 82 ~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
...|-.-.+||+.| |-+...|+.+....+++
T Consensus 119 ~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 149 (161)
T PRK09047 119 YWEDMDVAETAAAM-GCSEGSVKTHCSRATHA 149 (161)
T ss_pred HHhcCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34466789999999 99999999998766543
No 100
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=39.61 E-value=58 Score=33.64 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=42.4
Q ss_pred CCCCCCChHHHHHHHHHHHHcCC----------------CHHHHHhhC-----CCCCHHHHHHHHHHHhhhHHH
Q 039070 64 LKRGSFTEQEERIIIDIHRILGN----------------RWAQIAKHL-----PGRTDNEVKNFWNSCIKKKLI 116 (338)
Q Consensus 64 lkkg~WT~EEDe~Ll~lv~~~G~----------------kWs~IA~~L-----pgRT~~qcKnRW~slLkkkl~ 116 (338)
.--|.|+++=|+...++.+.|.. |=..||+++ ..||..||-.|-+.+-|++++
T Consensus 74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~r 147 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLR 147 (455)
T ss_pred ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 44689999999999999988841 457889876 568999999998877777654
No 101
>PRK09648 RNA polymerase sigma factor SigD; Reviewed
Probab=39.40 E-value=72 Score=27.94 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=25.7
Q ss_pred HHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 81 HRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 81 v~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+...|....+||..| |-+...|+.+....+++
T Consensus 151 ~~~~g~s~~EIA~~l-gis~~tV~~~l~Ra~~~ 182 (189)
T PRK09648 151 RVVVGLSAEETAEAV-GSTPGAVRVAQHRALAR 182 (189)
T ss_pred HHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 334477899999999 99999999998776654
No 102
>TIGR02948 SigW_bacill RNA polymerase sigma-W factor. This sigma factor is restricted to certain lineages of the order Bacillales.
Probab=38.92 E-value=63 Score=27.94 Aligned_cols=29 Identities=14% Similarity=-0.024 Sum_probs=23.8
Q ss_pred cCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 84 LGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 84 ~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
.|-.-.+||+.| |-+...|+++....+++
T Consensus 151 ~g~s~~eIA~~l-gis~~~v~~~l~Rar~~ 179 (187)
T TIGR02948 151 EDLSLKEISEIL-DLPVGTVKTRIHRGREA 179 (187)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 356789999999 88999999998776554
No 103
>PRK12532 RNA polymerase sigma factor; Provisional
Probab=38.72 E-value=92 Score=27.47 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=23.9
Q ss_pred HHcCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070 82 RILGNRWAQIAKHLPGRTDNEVKNFWNSCIK 112 (338)
Q Consensus 82 ~~~G~kWs~IA~~LpgRT~~qcKnRW~slLk 112 (338)
...|-.-.+||+.| |-+...|+.+....++
T Consensus 149 ~~~g~s~~EIA~~l-gis~~tVk~~l~Rar~ 178 (195)
T PRK12532 149 EILGFSSDEIQQMC-GISTSNYHTIMHRARE 178 (195)
T ss_pred HHhCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 34467789999999 9999999998876443
No 104
>PRK12515 RNA polymerase sigma factor; Provisional
Probab=38.26 E-value=77 Score=27.82 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=24.9
Q ss_pred HHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 82 RILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 82 ~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
...|-....||..| |-|...|++++...+++
T Consensus 144 ~~~~~s~~eIA~~l-gis~~tV~~~l~Rar~~ 174 (189)
T PRK12515 144 YYHEKSVEEVGEIV-GIPESTVKTRMFYARKK 174 (189)
T ss_pred HHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34467799999999 88999999998775543
No 105
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=38.24 E-value=46 Score=26.61 Aligned_cols=26 Identities=35% Similarity=0.620 Sum_probs=20.6
Q ss_pred HHHHHHHcCCCHHHHHhhCCCCCHHHH
Q 039070 77 IIDIHRILGNRWAQIAKHLPGRTDNEV 103 (338)
Q Consensus 77 Ll~lv~~~G~kWs~IA~~LpgRT~~qc 103 (338)
|..+....|.+|.++|++| |=+..+|
T Consensus 10 l~~ia~~iG~~Wk~Lar~L-Gls~~dI 35 (86)
T cd08318 10 ITVFANKLGEDWKTLAPHL-EMKDKEI 35 (86)
T ss_pred HHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 4446788899999999999 7666655
No 106
>PRK09637 RNA polymerase sigma factor SigZ; Provisional
Probab=38.11 E-value=73 Score=28.14 Aligned_cols=31 Identities=23% Similarity=0.138 Sum_probs=25.2
Q ss_pred HHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 82 RILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 82 ~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
...|-...+||..| |-+...|+.+....+++
T Consensus 119 ~~~g~~~~EIA~~l-gis~~tV~~~l~Rar~~ 149 (181)
T PRK09637 119 ELEGLSQKEIAEKL-GLSLSGAKSRVQRGRVK 149 (181)
T ss_pred HhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 34577899999999 99999999998766543
No 107
>PRK12512 RNA polymerase sigma factor; Provisional
Probab=37.12 E-value=82 Score=27.40 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=25.1
Q ss_pred HcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 83 ILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 83 ~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..|-...+||..| |-+...|+.+....+++
T Consensus 145 ~~g~s~~eIA~~l-~is~~tV~~~l~ra~~~ 174 (184)
T PRK12512 145 VEGASIKETAAKL-SMSEGAVRVALHRGLAA 174 (184)
T ss_pred HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4467789999999 99999999998876654
No 108
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=37.12 E-value=83 Score=27.00 Aligned_cols=31 Identities=29% Similarity=0.280 Sum_probs=24.6
Q ss_pred HHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 82 RILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 82 ~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
...|-.-.+||+.| |.+...|+.+....+++
T Consensus 131 ~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 161 (173)
T PRK09645 131 YYRGWSTAQIAADL-GIPEGTVKSRLHYALRA 161 (173)
T ss_pred HHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 33466789999999 99999999998776643
No 109
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=36.67 E-value=37 Score=39.74 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=46.2
Q ss_pred CccCCCHHHHHHHHHHHHHhCCCCcccccc--cccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHc-CCCH
Q 039070 12 KRGLWSPEEDEKLIKHVTTHGHGSWSSVPK--LAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRIL-GNRW 88 (338)
Q Consensus 12 kkg~WT~EEDe~L~~lV~k~G~~nW~~IAk--~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~-G~kW 88 (338)
.---|..++|..|+-.|-+||.|+|..|-- .++ =+.+ ..+...+-.+.|=..+-..|+.+...+ +.+|
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~--l~dK-------i~~~e~~P~a~~L~~R~~yLls~~~~~~~~~~ 1202 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLG--LTDK-------IFLVETVPQAKHLQRRADYLLSLLRKHDKGNT 1202 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCcccc--chhh-------hcccccCCchHHHHHHHHHHHHHHhhcccCCC
Confidence 345699999999999999999999998863 222 1111 111212344556666666677766666 4445
Q ss_pred HHHHh
Q 039070 89 AQIAK 93 (338)
Q Consensus 89 s~IA~ 93 (338)
.+.++
T Consensus 1203 ~~~~~ 1207 (1373)
T KOG0384|consen 1203 PKKLK 1207 (1373)
T ss_pred chhhh
Confidence 54443
No 110
>PRK12531 RNA polymerase sigma factor; Provisional
Probab=36.38 E-value=85 Score=27.79 Aligned_cols=30 Identities=17% Similarity=0.094 Sum_probs=24.7
Q ss_pred HcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 83 ILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 83 ~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..|-...+||+.| |-+...|+.|....+++
T Consensus 155 ~eg~s~~EIA~~l-gis~~tVk~rl~ra~~~ 184 (194)
T PRK12531 155 LEELPHQQVAEMF-DIPLGTVKSRLRLAVEK 184 (194)
T ss_pred HcCCCHHHHHHHh-CcCHHHHHHHHHHHHHH
Confidence 3466789999999 99999999998776654
No 111
>PRK12530 RNA polymerase sigma factor; Provisional
Probab=36.00 E-value=85 Score=27.81 Aligned_cols=29 Identities=10% Similarity=0.008 Sum_probs=24.0
Q ss_pred HcCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070 83 ILGNRWAQIAKHLPGRTDNEVKNFWNSCIK 112 (338)
Q Consensus 83 ~~G~kWs~IA~~LpgRT~~qcKnRW~slLk 112 (338)
..|-...+||..| |-+...||.|....++
T Consensus 148 ~~g~s~~EIA~~l-gis~~tVk~~l~RAr~ 176 (189)
T PRK12530 148 YLELSSEQICQEC-DISTSNLHVLLYRARL 176 (189)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3467899999999 9999999999766554
No 112
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=35.73 E-value=65 Score=27.23 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 039070 71 EQEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSCIKKK 114 (338)
Q Consensus 71 ~EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~slLkkk 114 (338)
.+-|.+|+++.++-|. .++.||+.+ |-|...|++|-+.+.+..
T Consensus 7 D~~D~~IL~~L~~d~r~~~~eia~~l-glS~~~v~~Ri~~L~~~G 50 (154)
T COG1522 7 DDIDRRILRLLQEDARISNAELAERV-GLSPSTVLRRIKRLEEEG 50 (154)
T ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCC
Confidence 3567888888888885 499999999 999999999987766544
No 113
>TIGR02943 Sig70_famx1 RNA polymerase sigma-70 factor, TIGR02943 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=35.65 E-value=89 Score=27.70 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=26.1
Q ss_pred HHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 80 IHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 80 lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+....|-.-..||+.| |-+...|+.|....+++
T Consensus 142 l~~~~g~s~~EIA~~l-gis~~tvk~rl~Rar~~ 174 (188)
T TIGR02943 142 MREVLGFESDEICQEL-EISTSNCHVLLYRARLS 174 (188)
T ss_pred HHHHhCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3344567899999999 99999999998776554
No 114
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=35.26 E-value=95 Score=26.28 Aligned_cols=31 Identities=13% Similarity=-0.050 Sum_probs=24.5
Q ss_pred HHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 82 RILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 82 ~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
...|-.-.+||+.| |-+...|+++....+++
T Consensus 119 ~~~g~s~~EIA~~l-gis~~tV~~~l~Rar~~ 149 (160)
T PRK09642 119 YLEEKSYQEIALQE-KIEVKTVEMKLYRARKW 149 (160)
T ss_pred HHhCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34466789999999 99999999998665543
No 115
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=35.06 E-value=53 Score=25.32 Aligned_cols=30 Identities=20% Similarity=0.542 Sum_probs=22.0
Q ss_pred HHHHHHHHHHH-cCCCHHHHHhhCCCCCHHHH
Q 039070 73 EERIIIDIHRI-LGNRWAQIAKHLPGRTDNEV 103 (338)
Q Consensus 73 EDe~Ll~lv~~-~G~kWs~IA~~LpgRT~~qc 103 (338)
-++.|..++.. .|.+|..+|++| |=+..+|
T Consensus 4 ~~~~~~~l~~~~~g~~W~~la~~L-g~~~~~i 34 (88)
T smart00005 4 TREKLAKLLDHPLGLDWRELARKL-GLSEADI 34 (88)
T ss_pred HHHHHHHHHcCccchHHHHHHHHc-CCCHHHH
Confidence 34567777777 899999999999 4444444
No 116
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=34.93 E-value=54 Score=26.21 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHH
Q 039070 74 ERIIIDIHRILGNRWAQIAKHLPGRTDNEVKN 105 (338)
Q Consensus 74 De~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKn 105 (338)
|..|..+...+|.+|..+|+.| |=+...|..
T Consensus 4 ~~~l~~ia~~LG~dWk~LAr~L-g~se~dI~~ 34 (84)
T cd08804 4 EERLAVIADHLGFSWTELAREL-DFTEEQIHQ 34 (84)
T ss_pred hhHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 5568888899999999999999 666666544
No 117
>cd08311 Death_p75NR Death domain of p75 Neurotophin Receptor. Death Domain (DD) found in p75 neurotrophin receptor (p75NTR, NGFR, TNFRSF16). p75NTR binds members of the neurotrophin (NT) family including nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), and NT3, among others. It contains an NT-binding extracellular region that bears four cysteine-rich repeats, a transmembrane domain, and an intracellular DD. p75NTR plays roles in the immune, vascular, and nervous systems, and has been shown to promote cell death or survival, and to induce neurite outgrowth or collapse depending on its ligands and co-receptors. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptor
Probab=32.93 E-value=53 Score=26.05 Aligned_cols=33 Identities=21% Similarity=0.481 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHH
Q 039070 71 EQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKN 105 (338)
Q Consensus 71 ~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKn 105 (338)
.||.++|+.. -..|.+|..+|..| |=+...|++
T Consensus 2 ~~~v~~ll~~-~nlG~dW~~LA~~L-G~~~~~I~~ 34 (77)
T cd08311 2 QEEVEKLLES-GRPGRDWRSLAGEL-GYEDEAIDT 34 (77)
T ss_pred hHHHHHHHhC-CCCccCHHHHHHHc-CCCHHHHHH
Confidence 5788888732 25688999999999 777777765
No 118
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=32.71 E-value=29 Score=37.71 Aligned_cols=48 Identities=13% Similarity=0.298 Sum_probs=34.5
Q ss_pred CccCCCHHHHHHHHHHHHHhCCCCccccccccc---------ccccCccccceeeccc
Q 039070 12 KRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAG---------LQRCGKSCRLRWINYL 60 (338)
Q Consensus 12 kkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg---------~~Rt~kQCr~RW~n~L 60 (338)
+|..||-.|.+....+++.+|. ++.+|-+.+- .-++.-|.|.+|++.+
T Consensus 87 ~ktaWt~~E~~~Ffdal~~~GK-dFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~ 143 (782)
T KOG4468|consen 87 AKTAWTHQEEESFFDALRQVGK-DFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLV 143 (782)
T ss_pred cccccchhhHHHHHHHHHHhcc-cHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHH
Confidence 4678999999999999999995 8888822111 0345557777776543
No 119
>PRK12524 RNA polymerase sigma factor; Provisional
Probab=32.52 E-value=1e+02 Score=27.28 Aligned_cols=32 Identities=16% Similarity=0.086 Sum_probs=25.0
Q ss_pred HHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 81 HRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 81 v~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+...|-.+.+||+.| |=+...|+++-...+++
T Consensus 148 ~~~~g~s~~eIA~~l-gis~~tV~~~l~Ra~~~ 179 (196)
T PRK12524 148 RHIEGLSNPEIAEVM-EIGVEAVESLTARGKRA 179 (196)
T ss_pred HHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 334567899999999 88999999988765543
No 120
>TIGR02999 Sig-70_X6 RNA polymerase sigma factor, TIGR02999 family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found in a variety of species including Rhodopirellula baltica which encodes a paralogous group of five.
Probab=32.35 E-value=1.1e+02 Score=26.38 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=24.6
Q ss_pred HcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 83 ILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 83 ~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..|-...+||+.| |-+...|+.|....+++
T Consensus 148 ~~g~s~~EIA~~l-gis~~tVk~~l~Rar~~ 177 (183)
T TIGR02999 148 FAGLTVEEIAELL-GVSVRTVERDWRFARAW 177 (183)
T ss_pred HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3466789999999 99999999998776543
No 121
>PRK06759 RNA polymerase factor sigma-70; Validated
Probab=31.25 E-value=1.2e+02 Score=25.24 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=23.7
Q ss_pred HcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 83 ILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 83 ~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..|-...+||+.+ |-+...|+.+-...+++
T Consensus 120 ~~~~s~~EIA~~l-~is~~tV~~~~~ra~~~ 149 (154)
T PRK06759 120 FVGKTMGEIALET-EMTYYQVRWIYRQALEK 149 (154)
T ss_pred hcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3456789999999 99999999987765543
No 122
>TIGR02950 SigM_subfam RNA polymerase sigma factor, SigM family. This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot: SIGM_BACSU) and is activated by various stressors.
Probab=30.69 E-value=42 Score=28.05 Aligned_cols=28 Identities=21% Similarity=0.127 Sum_probs=23.6
Q ss_pred CCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 85 GNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 85 G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
|-.+.+||..| |=+...|++++....++
T Consensus 121 g~s~~eIA~~l-gis~~tv~~~l~Ra~~~ 148 (154)
T TIGR02950 121 EFSYKEIAELL-NLSLAKVKSNLFRARKE 148 (154)
T ss_pred cCcHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 55799999999 99999999998776544
No 123
>PRK12514 RNA polymerase sigma factor; Provisional
Probab=29.78 E-value=1.3e+02 Score=26.11 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=23.8
Q ss_pred cCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 84 LGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 84 ~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
.|-.=..||+.| |.+...|+.+....+++
T Consensus 144 ~g~s~~eIA~~l-gis~~tV~~~l~Rar~~ 172 (179)
T PRK12514 144 EGLSYKELAERH-DVPLNTMRTWLRRSLLK 172 (179)
T ss_pred cCCCHHHHHHHH-CCChHHHHHHHHHHHHH
Confidence 366789999999 99999999998776543
No 124
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=29.72 E-value=66 Score=25.89 Aligned_cols=30 Identities=27% Similarity=0.587 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCCHHHHHhhCCCCCHHHHHH
Q 039070 75 RIIIDIHRILGNRWAQIAKHLPGRTDNEVKN 105 (338)
Q Consensus 75 e~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKn 105 (338)
+.|-.+....|.+|..+|+.| |=++.+|..
T Consensus 3 ~~l~~l~~~lG~~Wk~lar~L-G~s~~eI~~ 32 (86)
T cd08777 3 KHLDLLRENLGKKWKRCARKL-GFTESEIEE 32 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 445666788899999999999 777776654
No 125
>TIGR02952 Sig70_famx2 RNA polymerase sigma-70 factor, TIGR02952 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in a limited number of Gram-positive bacterial lineages.
Probab=29.69 E-value=1.3e+02 Score=25.43 Aligned_cols=29 Identities=34% Similarity=0.378 Sum_probs=23.3
Q ss_pred cCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 84 LGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 84 ~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
.|-.-.+||+.| |-+...|+.+-...+++
T Consensus 137 ~g~s~~eIA~~l-~is~~tv~~~l~ra~~~ 165 (170)
T TIGR02952 137 QNLPIAEVARIL-GKTEGAVKILQFRAIKK 165 (170)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 366789999999 99999999988765543
No 126
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=29.55 E-value=67 Score=22.42 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=18.6
Q ss_pred CCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHH
Q 039070 68 SFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKN 105 (338)
Q Consensus 68 ~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKn 105 (338)
.+|.+|-..|..++ .-|..=.+||+.| ||+...|.+
T Consensus 4 ~Lt~~eR~~I~~l~-~~G~s~~~IA~~l-g~s~sTV~r 39 (44)
T PF13936_consen 4 HLTPEERNQIEALL-EQGMSIREIAKRL-GRSRSTVSR 39 (44)
T ss_dssp --------HHHHHH-CS---HHHHHHHT-T--HHHHHH
T ss_pred chhhhHHHHHHHHH-HcCCCHHHHHHHH-CcCcHHHHH
Confidence 56777777777664 5777789999999 999988865
No 127
>COG2963 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=29.36 E-value=1.6e+02 Score=24.14 Aligned_cols=46 Identities=13% Similarity=0.259 Sum_probs=36.3
Q ss_pred CCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCC-CHHHHHHHHHHHhhh
Q 039070 66 RGSFTEQEERIIIDIHRILGNRWAQIAKHLPGR-TDNEVKNFWNSCIKK 113 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgR-T~~qcKnRW~slLkk 113 (338)
+-.||+|.-..+++++..-|..=+.||+.+ |- ..++ ..+|...+..
T Consensus 5 ~r~~s~EfK~~iv~~~~~~g~sv~~vAr~~-gv~~~~~-l~~W~~~~~~ 51 (116)
T COG2963 5 RKKYSPEFKLEAVALYLRGGDTVSEVAREF-GIVSATQ-LYKWRIQLQK 51 (116)
T ss_pred cccCCHHHHHHHHHHHHhcCccHHHHHHHh-CCCChHH-HHHHHHHHHH
Confidence 568999999999999999999889999999 65 4444 5556554443
No 128
>PRK12527 RNA polymerase sigma factor; Reviewed
Probab=29.31 E-value=1.4e+02 Score=25.19 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=23.5
Q ss_pred cCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 84 LGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 84 ~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
.|-.=..||..| |-+...|+.|....+++
T Consensus 120 ~~~s~~eIA~~l-gis~~tv~~~l~ra~~~ 148 (159)
T PRK12527 120 EGLSHQQIAEHL-GISRSLVEKHIVNAMKH 148 (159)
T ss_pred cCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 455678999999 99999999998766654
No 129
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=28.93 E-value=75 Score=25.68 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCCHHHHHhhC
Q 039070 74 ERIIIDIHRILGNRWAQIAKHL 95 (338)
Q Consensus 74 De~Ll~lv~~~G~kWs~IA~~L 95 (338)
|.+|..+....|..|.++|..|
T Consensus 4 ~~~l~~Ia~~LG~dW~~Lar~L 25 (84)
T cd08805 4 EMKMAVIREHLGLSWAELAREL 25 (84)
T ss_pred hhHHHHHHHHhcchHHHHHHHc
Confidence 5578888999999999999998
No 130
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=28.86 E-value=1.2e+02 Score=26.66 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=24.7
Q ss_pred HcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 83 ILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 83 ~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..|-.-.+||+.| |-+...|+.+....+++
T Consensus 144 ~~g~s~~EIA~~l-gis~~tVk~~l~Rar~~ 173 (185)
T PRK09649 144 LLGLSYADAAAVC-GCPVGTIRSRVARARDA 173 (185)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3456789999999 99999999999776654
No 131
>PRK13919 putative RNA polymerase sigma E protein; Provisional
Probab=28.71 E-value=1.4e+02 Score=25.98 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=23.6
Q ss_pred cCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 84 LGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 84 ~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
.|-.=.+||+.+ |-|...|+.+.+..+++
T Consensus 150 ~~~s~~eIA~~l-gis~~~V~~~l~ra~~~ 178 (186)
T PRK13919 150 QGYTHREAAQLL-GLPLGTLKTRARRALSR 178 (186)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 355679999999 99999999998776654
No 132
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=28.60 E-value=1.1e+02 Score=31.06 Aligned_cols=86 Identities=15% Similarity=0.327 Sum_probs=61.0
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCC---cccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHH-c----
Q 039070 13 RGLWSPEEDEKLIKHVTTHGHGS---WSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRI-L---- 84 (338)
Q Consensus 13 kg~WT~EEDe~L~~lV~k~G~~n---W~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~-~---- 84 (338)
...||..|...|+++.+...... -.+|++.+. +|+..++++ |.+.|+ +..+.+++++ |
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~-~Rs~aEI~~-fl~~LK------------~rvareaiqkv~~~g~ 86 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELP-GRSEAEIRD-FLQQLK------------GRVAREAIQKVHPGGL 86 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhcc-CcCHHHHHH-HHHHHH------------HHHHHHHHHHhccccc
Confidence 46899999999999998763233 457778887 898888876 334443 2234444444 2
Q ss_pred -CC------------CHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070 85 -GN------------RWAQIAKHLPGRTDNEVKNFWNSCIK 112 (338)
Q Consensus 85 -G~------------kWs~IA~~LpgRT~~qcKnRW~slLk 112 (338)
|. -|..+|+.+.|.-...+-.-|-.+|-
T Consensus 87 ~~~R~~e~q~paPIEvW~dla~k~tg~~ee~~t~afsq~l~ 127 (344)
T PF11035_consen 87 KGPRRREAQPPAPIEVWMDLAEKVTGPLEEALTAAFSQVLT 127 (344)
T ss_pred ccccccccCCCccHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 21 29999999999999998888876663
No 133
>PRK09651 RNA polymerase sigma factor FecI; Provisional
Probab=28.52 E-value=1.1e+02 Score=26.42 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=25.2
Q ss_pred cCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 039070 84 LGNRWAQIAKHLPGRTDNEVKNFWNSCIKKK 114 (338)
Q Consensus 84 ~G~kWs~IA~~LpgRT~~qcKnRW~slLkkk 114 (338)
.|-.-.+||+.+ |-+...|+++....++.-
T Consensus 134 ~g~s~~EIA~~l-gis~~tV~~~l~Ra~~~~ 163 (172)
T PRK09651 134 DGLTYSEIAHKL-GVSVSSVKKYVAKATEHC 163 (172)
T ss_pred cCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 356789999999 999999999998877653
No 134
>PRK12542 RNA polymerase sigma factor; Provisional
Probab=28.40 E-value=1.4e+02 Score=26.15 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=25.1
Q ss_pred HHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 82 RILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 82 ~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
...|-.-.+||+.| |-+...|+++....+++
T Consensus 135 ~~~g~s~~EIA~~l-gis~~tVk~~l~Rar~~ 165 (185)
T PRK12542 135 VFYNLTYQEISSVM-GITEANVRKQFERARKR 165 (185)
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34567789999999 99999999998766554
No 135
>TIGR02984 Sig-70_plancto1 RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are apparently found only in the Planctomycetaceae family including the genuses Gemmata and Pirellula (in which seven sequences are found).
Probab=28.33 E-value=1.4e+02 Score=25.74 Aligned_cols=31 Identities=19% Similarity=0.532 Sum_probs=25.0
Q ss_pred HHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 82 RILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 82 ~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
...|-.-.+||..| |-|...|+.+....+++
T Consensus 153 ~~~g~s~~eIA~~l-gis~~~v~~~l~Ra~~~ 183 (189)
T TIGR02984 153 HLEGLSFAEVAERM-DRSEGAVSMLWVRGLAR 183 (189)
T ss_pred HhcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34567789999999 99999999998776654
No 136
>PRK12528 RNA polymerase sigma factor; Provisional
Probab=27.73 E-value=1.6e+02 Score=25.02 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=26.1
Q ss_pred HHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 80 IHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 80 lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+..-.|-.-.+||+.+ |-+...|+.|....+++
T Consensus 124 L~~~~g~s~~EIA~~l-~is~~tV~~~l~ra~~~ 156 (161)
T PRK12528 124 LAQVDGLGYGEIATEL-GISLATVKRYLNKAAMR 156 (161)
T ss_pred HHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3344577899999999 99999999998776654
No 137
>TIGR02983 SigE-fam_strep RNA polymerase sigma-70 factor, sigma-E family. This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Probab=27.61 E-value=1.4e+02 Score=25.24 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 73 EERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 73 EDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
++..++.+....|-.=..||..| |-+...|+.+....+++
T Consensus 114 ~~r~i~~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 153 (162)
T TIGR02983 114 RQRAVVVLRYYEDLSEAQVAEAL-GISVGTVKSRLSRALAR 153 (162)
T ss_pred HHHHHhhhHHHhcCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 34444445455567789999999 99999999998876654
No 138
>PRK05602 RNA polymerase sigma factor; Reviewed
Probab=27.59 E-value=1.3e+02 Score=26.18 Aligned_cols=30 Identities=7% Similarity=0.019 Sum_probs=23.6
Q ss_pred HcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 83 ILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 83 ~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..|-.-.+||+.| |-+...|+.+....+++
T Consensus 142 ~~g~s~~EIA~~l-gis~~tV~~~l~Rar~~ 171 (186)
T PRK05602 142 YQGLSNIEAAAVM-DISVDALESLLARGRRA 171 (186)
T ss_pred hcCCCHHHHHHHh-CcCHHHHHHHHHHHHHH
Confidence 3466789999999 99999999987665543
No 139
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=27.55 E-value=1.6e+02 Score=25.30 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=25.0
Q ss_pred HHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 82 RILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 82 ~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
...|-.-.+||+.+ |-+...|+++-...+++
T Consensus 125 ~~~g~s~~eIA~~l-gis~~tV~~~l~Rar~~ 155 (164)
T PRK12547 125 GASGFSYEDAAAIC-GCAVGTIKSRVSRARNR 155 (164)
T ss_pred HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 34566789999999 89999999998776654
No 140
>PRK12536 RNA polymerase sigma factor; Provisional
Probab=27.06 E-value=1.5e+02 Score=25.81 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=25.9
Q ss_pred HHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 81 HRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 81 v~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+...|-...+||+.| |.+...|+++-...+++
T Consensus 141 ~~~~g~s~~EIA~~l-~is~~tV~~~l~rar~~ 172 (181)
T PRK12536 141 VKLEGLSVAETAQLT-GLSESAVKVGIHRGLKA 172 (181)
T ss_pred HHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 334567899999999 99999999998776654
No 141
>PRK12516 RNA polymerase sigma factor; Provisional
Probab=27.02 E-value=1.5e+02 Score=26.38 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=26.5
Q ss_pred HHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070 77 IIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIK 112 (338)
Q Consensus 77 Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLk 112 (338)
++.|....|-...+||+.| |-+...|+.|-...++
T Consensus 124 i~~L~~~~g~s~~EIA~~L-gis~~tVk~~l~Rar~ 158 (187)
T PRK12516 124 AIILVGASGFAYEEAAEIC-GCAVGTIKSRVNRARQ 158 (187)
T ss_pred HHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3334444577899999999 8999999998766554
No 142
>PRK00118 putative DNA-binding protein; Validated
Probab=26.67 E-value=1.7e+02 Score=24.59 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070 71 EQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIK 112 (338)
Q Consensus 71 ~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLk 112 (338)
++.+..++.+....|-....||+.+ |-|...|+.+-....+
T Consensus 19 ~ekqRevl~L~y~eg~S~~EIAe~l-GIS~~TV~r~L~RArk 59 (104)
T PRK00118 19 TEKQRNYMELYYLDDYSLGEIAEEF-NVSRQAVYDNIKRTEK 59 (104)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 4566777788888899999999999 9999999888665443
No 143
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=26.23 E-value=1.8e+02 Score=24.57 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=35.1
Q ss_pred CCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 67 GSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 67 g~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
...|+.|-+.|.-+.. |-....||+.+ +-+...++.|.+++++|
T Consensus 136 ~~Lt~~E~~il~~l~~--g~~~~~Ia~~l-~~s~~tv~~~~~~l~~K 179 (196)
T PRK10360 136 DPLTKRERQVAEKLAQ--GMAVKEIAAEL-GLSPKTVHVHRANLMEK 179 (196)
T ss_pred cCCCHHHHHHHHHHHC--CCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4688888877766664 55789999999 78999999999887765
No 144
>PRK11922 RNA polymerase sigma factor; Provisional
Probab=25.81 E-value=82 Score=28.96 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=23.3
Q ss_pred CCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 85 GNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 85 G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
|-.-.+||+.| |.+...|+++.+..+++
T Consensus 165 g~s~~EIAe~l-gis~~tVk~~l~Rar~k 192 (231)
T PRK11922 165 ELSVEETAQAL-GLPEETVKTRLHRARRL 192 (231)
T ss_pred CCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 55789999999 99999999998766543
No 145
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=25.68 E-value=1.7e+02 Score=20.09 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHH
Q 039070 73 EERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNF 106 (338)
Q Consensus 73 EDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnR 106 (338)
|.+.|.++...+|++.++.|+.| |=+...+..+
T Consensus 6 E~~~i~~aL~~~~gn~~~aA~~L-gisr~tL~~k 38 (42)
T PF02954_consen 6 EKQLIRQALERCGGNVSKAARLL-GISRRTLYRK 38 (42)
T ss_dssp HHHHHHHHHHHTTT-HHHHHHHH-TS-HHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH-CCCHHHHHHH
Confidence 67789999999999999999998 5555555444
No 146
>PRK15201 fimbriae regulatory protein FimW; Provisional
Probab=25.67 E-value=1.8e+02 Score=27.44 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=36.2
Q ss_pred CCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 67 GSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 67 g~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
...|+.|-+.|.-+.+ |....+||+.| +-+...|+++-..+++|
T Consensus 132 ~~LSpRErEVLrLLAq--GkTnKEIAe~L-~IS~rTVkth~srImkK 175 (198)
T PRK15201 132 RHFSVTERHLLKLIAS--GYHLSETAALL-SLSEEQTKSLRRSIMRK 175 (198)
T ss_pred CCCCHHHHHHHHHHHC--CCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3588888877666554 77789999999 99999999999888766
No 147
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=25.55 E-value=1.5e+02 Score=27.35 Aligned_cols=43 Identities=28% Similarity=0.341 Sum_probs=34.7
Q ss_pred CCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 68 SFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 68 ~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..|+.|-+.|.-+.. |....+||+.| +-+...||.+-..+++|
T Consensus 155 ~Lt~rE~~Vl~l~~~--G~s~~eIA~~L-~iS~~TVk~~~~~i~~K 197 (216)
T PRK10100 155 LLTHREKEILNKLRI--GASNNEIARSL-FISENTVKTHLYNLFKK 197 (216)
T ss_pred CCCHHHHHHHHHHHc--CCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 478766665555554 88889999999 99999999999888766
No 148
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=25.47 E-value=29 Score=35.86 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=40.8
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCccccccc-----ccccccCccccceeecc
Q 039070 10 KVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKL-----AGLQRCGKSCRLRWINY 59 (338)
Q Consensus 10 ~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~-----lg~~Rt~kQCr~RW~n~ 59 (338)
.+.-..||++|.+-|.++.++|.- .|--||.. .+..|+.....+||..+
T Consensus 127 ~l~dn~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v 180 (445)
T KOG2656|consen 127 HLNDNSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSV 180 (445)
T ss_pred hhccccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHH
Confidence 345567999999999999999996 89999976 56459999999998754
No 149
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=25.34 E-value=88 Score=25.05 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=19.1
Q ss_pred HHHHHHHHHcCCCHHHHHhhC
Q 039070 75 RIIIDIHRILGNRWAQIAKHL 95 (338)
Q Consensus 75 e~Ll~lv~~~G~kWs~IA~~L 95 (338)
..|..+....|.+|..+|.+|
T Consensus 3 ~~l~~ia~~LG~~Wk~lar~L 23 (86)
T cd08779 3 SNLLSIAGRLGLDWQAIGLHL 23 (86)
T ss_pred hHHHHHHHHHhHHHHHHHHHc
Confidence 458889999999999999998
No 150
>PRK12546 RNA polymerase sigma factor; Provisional
Probab=24.68 E-value=1.5e+02 Score=26.39 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=26.2
Q ss_pred HHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 80 IHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 80 lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
++...|-...+||..| |-+...|+++-...+++
T Consensus 124 L~~~~g~s~~EIA~~L-giS~~tVk~~l~Rar~~ 156 (188)
T PRK12546 124 LVGASGFSYEEAAEMC-GVAVGTVKSRANRARAR 156 (188)
T ss_pred hHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4445577899999999 89999999998776644
No 151
>PRK12520 RNA polymerase sigma factor; Provisional
Probab=24.03 E-value=1.8e+02 Score=25.45 Aligned_cols=28 Identities=14% Similarity=0.005 Sum_probs=23.0
Q ss_pred cCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070 84 LGNRWAQIAKHLPGRTDNEVKNFWNSCIK 112 (338)
Q Consensus 84 ~G~kWs~IA~~LpgRT~~qcKnRW~slLk 112 (338)
.|-.=.+||..| |-+...|++|....++
T Consensus 146 ~g~s~~EIA~~l-gis~~tV~~~l~Rar~ 173 (191)
T PRK12520 146 LELETEEICQEL-QITATNAWVLLYRARM 173 (191)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 356679999999 9999999999876654
No 152
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=23.90 E-value=19 Score=30.54 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCC
Q 039070 19 EEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63 (338)
Q Consensus 19 EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~ 63 (338)
+-|.++++++++.+...+.+||+.+| -+...|+.|-.+..+..
T Consensus 8 ~~D~~IL~~L~~d~r~~~~eia~~lg--lS~~~v~~Ri~~L~~~G 50 (154)
T COG1522 8 DIDRRILRLLQEDARISNAELAERVG--LSPSTVLRRIKRLEEEG 50 (154)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCC
Confidence 56889999999999889999999998 77778887755544433
No 153
>PRK12545 RNA polymerase sigma factor; Provisional
Probab=23.56 E-value=1.8e+02 Score=25.97 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=25.8
Q ss_pred cCCCHHHHHhhCCCCCHHHHHHHHHHHhh---hHHHhCCC
Q 039070 84 LGNRWAQIAKHLPGRTDNEVKNFWNSCIK---KKLIARGI 120 (338)
Q Consensus 84 ~G~kWs~IA~~LpgRT~~qcKnRW~slLk---kkl~~~g~ 120 (338)
.|-.=.+||..| |.+...||.|....++ +.+...+.
T Consensus 154 eg~s~~EIA~~l-gis~~tVk~~l~RAr~~Lr~~l~~~~~ 192 (201)
T PRK12545 154 LDFEIDDICTEL-TLTANHCSVLLYRARTRLRTCLSEKGL 192 (201)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456789999999 9999999988765443 34444443
No 154
>PRK12537 RNA polymerase sigma factor; Provisional
Probab=23.45 E-value=1.9e+02 Score=25.25 Aligned_cols=30 Identities=30% Similarity=0.405 Sum_probs=24.4
Q ss_pred HcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 83 ILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 83 ~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..|-.=..||+.+ |-|...|+.+....+++
T Consensus 147 ~~~~s~~eIA~~l-gis~~tV~~~l~ra~~~ 176 (182)
T PRK12537 147 VDGCSHAEIAQRL-GAPLGTVKAWIKRSLKA 176 (182)
T ss_pred HcCCCHHHHHHHH-CCChhhHHHHHHHHHHH
Confidence 3466679999999 99999999998877654
No 155
>PRK09646 RNA polymerase sigma factor SigK; Reviewed
Probab=23.45 E-value=1.9e+02 Score=25.55 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=23.6
Q ss_pred HcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 83 ILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 83 ~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..|-.-.+||+.| |-+...|+.+-...+++
T Consensus 156 ~~~~s~~EIA~~L-gis~~tVk~~l~ra~~~ 185 (194)
T PRK09646 156 YGGLTYREVAERL-AVPLGTVKTRMRDGLIR 185 (194)
T ss_pred HcCCCHHHHHHHh-CCChHhHHHHHHHHHHH
Confidence 3456789999999 78999999987666544
No 156
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=23.16 E-value=1.7e+02 Score=25.98 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=37.5
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCHHHHHhhCC----CCCHHHHHHHHHHH
Q 039070 65 KRGSFTEQEERIIIDIHRILGNRWAQIAKHLP----GRTDNEVKNFWNSC 110 (338)
Q Consensus 65 kkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~Lp----gRT~~qcKnRW~sl 110 (338)
..-.-|+.|..-|..|+.+||.++...|.-.. -.|..+|+.+....
T Consensus 113 ~~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~~ 162 (164)
T PF09420_consen 113 KPRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRKY 162 (164)
T ss_pred CCCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHHh
Confidence 34578899999999999999999999988542 37899998877654
No 157
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=23.14 E-value=1.5e+02 Score=28.24 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=24.4
Q ss_pred HcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 83 ILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 83 ~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..|-.-.+||+.| |.+...||.|....+++
T Consensus 156 ~~g~s~~EIA~~l-gis~~tV~~~l~Rar~~ 185 (324)
T TIGR02960 156 VLGWRAAETAELL-GTSTASVNSALQRARAT 185 (324)
T ss_pred HhCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3466789999999 99999999998776544
No 158
>TIGR02989 Sig-70_gvs1 RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).
Probab=22.63 E-value=2.2e+02 Score=23.78 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=22.0
Q ss_pred HcCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070 83 ILGNRWAQIAKHLPGRTDNEVKNFWNSCIK 112 (338)
Q Consensus 83 ~~G~kWs~IA~~LpgRT~~qcKnRW~slLk 112 (338)
..|-.=..||+.+ |=|...|+.+.....+
T Consensus 125 ~~g~~~~eIA~~l-~is~~tv~~~l~Rar~ 153 (159)
T TIGR02989 125 QRGVSLTALAEQL-GRTVNAVYKALSRLRV 153 (159)
T ss_pred hcCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 3456678889988 8888999988766554
No 159
>PRK06986 fliA flagellar biosynthesis sigma factor; Validated
Probab=22.33 E-value=1.8e+02 Score=26.76 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=27.2
Q ss_pred HHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 77 IIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 77 Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
++.++...|-...+||+.+ |-+...|+.+-...+++
T Consensus 192 vl~l~~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 227 (236)
T PRK06986 192 VLSLYYQEELNLKEIGAVL-GVSESRVSQIHSQAIKR 227 (236)
T ss_pred HHHhHhccCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3334444566789999999 99999999988776654
No 160
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=22.33 E-value=54 Score=29.50 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccc
Q 039070 15 LWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRL 54 (338)
Q Consensus 15 ~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~ 54 (338)
.||.|+.++|.++... |. .=.+||+.|| +.+...+.-
T Consensus 2 ~Wtde~~~~L~~lw~~-G~-SasqIA~~lg-~vsRnAViG 38 (162)
T PF07750_consen 2 SWTDERVERLRKLWAE-GL-SASQIARQLG-GVSRNAVIG 38 (162)
T ss_pred CCCHHHHHHHHHHHHc-CC-CHHHHHHHhC-Ccchhhhhh
Confidence 5999999999999854 42 6799999999 444444433
No 161
>PRK09483 response regulator; Provisional
Probab=22.29 E-value=1.2e+02 Score=26.04 Aligned_cols=44 Identities=23% Similarity=0.392 Sum_probs=34.7
Q ss_pred CCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 67 GSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 67 g~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
...|+.|-+.|.-+ ..|..=.+||+.+ +-+...|+.|-+++++|
T Consensus 147 ~~Lt~rE~~vl~~~--~~G~~~~~Ia~~l-~is~~TV~~~~~~i~~K 190 (217)
T PRK09483 147 ASLSERELQIMLMI--TKGQKVNEISEQL-NLSPKTVNSYRYRMFSK 190 (217)
T ss_pred cccCHHHHHHHHHH--HCCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 35899999887544 3565567999999 77999999998887776
No 162
>PLN03162 golden-2 like transcription factor; Provisional
Probab=22.13 E-value=6.1e+02 Score=26.54 Aligned_cols=45 Identities=13% Similarity=0.162 Sum_probs=36.5
Q ss_pred CCCCChHHHHHHHHHHHHcCCC---HHHHHhhC--CCCCHHHHHHHHHHH
Q 039070 66 RGSFTEQEERIIIDIHRILGNR---WAQIAKHL--PGRTDNEVKNFWNSC 110 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G~k---Ws~IA~~L--pgRT~~qcKnRW~sl 110 (338)
|=.||+|=.++.+++|.++|.. =+.|=+.| +|=|..+|+.|.+.+
T Consensus 237 RLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKY 286 (526)
T PLN03162 237 KVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKY 286 (526)
T ss_pred cccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 3479999999999999999942 56777766 788999999887554
No 163
>PRK06811 RNA polymerase factor sigma-70; Validated
Probab=22.08 E-value=2.1e+02 Score=25.11 Aligned_cols=35 Identities=34% Similarity=0.436 Sum_probs=25.9
Q ss_pred cCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCC
Q 039070 84 LGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGI 120 (338)
Q Consensus 84 ~G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~ 120 (338)
-|-.=.+||+.| |.|...|+++-...++ ++++..+
T Consensus 146 ~g~s~~EIAe~l-gis~~~V~~~l~Ra~~-~Lr~~~~ 180 (189)
T PRK06811 146 LGEKIEEIAKKL-GLTRSAIDNRLSRGRK-KLQKNKL 180 (189)
T ss_pred ccCCHHHHHHHH-CCCHHHHHHHHHHHHH-HHHHccc
Confidence 355678999999 9999999999876554 3555433
No 164
>PRK09638 RNA polymerase sigma factor SigY; Reviewed
Probab=21.93 E-value=91 Score=26.76 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=24.1
Q ss_pred HcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 83 ILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 83 ~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
.+|-....||+.| |-+...|+.+....+++
T Consensus 140 ~~g~s~~eIA~~l-~is~~~V~~~l~ra~~~ 169 (176)
T PRK09638 140 YYGYTYEEIAKML-NIPEGTVKSRVHHGIKQ 169 (176)
T ss_pred hcCCCHHHHHHHH-CCChhHHHHHHHHHHHH
Confidence 3467799999999 88999999988766544
No 165
>PRK09647 RNA polymerase sigma factor SigE; Reviewed
Probab=21.65 E-value=2.1e+02 Score=25.83 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=23.7
Q ss_pred cCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 84 LGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 84 ~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
.|-.=.+||+.| |-+...|+++....+++
T Consensus 153 ~g~s~~EIA~~L-gis~~tV~~~l~RArk~ 181 (203)
T PRK09647 153 EGLSYEEIAATL-GVKLGTVRSRIHRGRQQ 181 (203)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 456678999999 99999999998776654
No 166
>PRK12519 RNA polymerase sigma factor; Provisional
Probab=21.32 E-value=1.8e+02 Score=25.53 Aligned_cols=29 Identities=31% Similarity=0.202 Sum_probs=22.8
Q ss_pred cCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 84 LGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 84 ~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
.|-.=.+||..| |-+...|+.+-...+++
T Consensus 156 ~g~s~~EIA~~l-gis~~tV~~~l~Ra~~~ 184 (194)
T PRK12519 156 EGLSQSEIAKRL-GIPLGTVKARARQGLLK 184 (194)
T ss_pred cCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 456678999999 88999999887665544
No 167
>PF01710 HTH_Tnp_IS630: Transposase; InterPro: IPR002622 Transposase proteins are necessary for efficient DNA transposition. This entry includes insertion sequences from Synechocystis sp. (strain PCC 6803) three of which are characterised as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.16 E-value=67 Score=26.94 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHH
Q 039070 20 EDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIII 78 (338)
Q Consensus 20 EDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll 78 (338)
+.+.|.++|+.++...-.++|+.+| ...+...|..+.+.-..++..|..+++..--
T Consensus 58 d~~~L~~~v~~~pd~tl~Ela~~l~---Vs~~ti~~~Lkrlg~t~KK~~~~~~~~~~~~ 113 (119)
T PF01710_consen 58 DRDELKALVEENPDATLRELAERLG---VSPSTIWRALKRLGITRKKKTLHSEKDREKN 113 (119)
T ss_pred cHHHHHHHHHHCCCcCHHHHHHHcC---CCHHHHHHHHHHcCchhccCcccchhHHHHH
Confidence 5677999999999877789999887 3555556677777778888888776665543
No 168
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=20.66 E-value=1.7e+02 Score=26.62 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=35.4
Q ss_pred CCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 68 SFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 68 ~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..|+.|-+.|.-+++ |...++||+.| +-+...|++|-.++++|
T Consensus 137 ~LT~RE~eVL~lla~--G~snkeIA~~L-~iS~~TVk~h~~~I~~K 179 (207)
T PRK15411 137 SLSRTESSMLRMWMA--GQGTIQISDQM-NIKAKTVSSHKGNIKRK 179 (207)
T ss_pred cCCHHHHHHHHHHHc--CCCHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 489999887766654 55569999999 99999999998887776
No 169
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=20.52 E-value=1.2e+02 Score=22.81 Aligned_cols=19 Identities=26% Similarity=0.719 Sum_probs=16.1
Q ss_pred HHHHHHHcCCCHHHHHhhC
Q 039070 77 IIDIHRILGNRWAQIAKHL 95 (338)
Q Consensus 77 Ll~lv~~~G~kWs~IA~~L 95 (338)
+..+....|++|..+|+.|
T Consensus 2 ~~~ia~~lg~~W~~la~~L 20 (79)
T cd01670 2 LDKLAKKLGKDWKKLARKL 20 (79)
T ss_pred HHHHHHHHhhHHHHHHHHh
Confidence 4566788899999999998
No 170
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=20.16 E-value=31 Score=27.70 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCC
Q 039070 19 EEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63 (338)
Q Consensus 19 EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~ 63 (338)
+.|.+++.++.+.+.-.+.+||+.+| -+...++.|..+..+..
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l~--~s~~tv~~~l~~L~~~g 45 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKVG--LSPSTVHNRVKRLEEEG 45 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 56889999999998779999999987 77777887766544433
Done!