Query 039070
Match_columns 338
No_of_seqs 191 out of 1382
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 09:44:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 6.3E-34 2.2E-38 232.4 8.7 105 10-115 1-105 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 2.6E-33 8.8E-38 238.0 9.3 108 13-121 2-109 (131)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 1.8E-33 6E-38 231.4 7.8 103 13-116 1-103 (107)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 1.9E-33 6.4E-38 237.5 7.6 111 4-115 12-128 (128)
5 3osg_A MYB21; transcription-DN 100.0 6.7E-33 2.3E-37 234.2 8.6 105 7-113 5-109 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 9.4E-32 3.2E-36 234.5 3.0 119 11-130 4-123 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1E-30 3.5E-35 227.9 7.6 107 8-115 53-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 9.7E-23 3.3E-27 171.8 3.7 91 39-130 1-92 (128)
9 2dim_A Cell division cycle 5-l 99.8 7.8E-22 2.7E-26 150.8 1.1 67 7-74 3-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 2.3E-18 7.8E-23 160.1 6.3 106 8-114 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.7 3.6E-18 1.2E-22 132.9 5.7 59 53-112 10-68 (73)
12 2cu7_A KIAA1915 protein; nucle 99.7 2.4E-17 8.2E-22 126.8 8.0 66 60-126 3-68 (72)
13 2juh_A Telomere binding protei 99.7 2.8E-18 9.7E-23 145.2 1.4 83 7-90 11-103 (121)
14 2dim_A Cell division cycle 5-l 99.7 3.1E-17 1E-21 125.3 6.8 65 61-125 4-69 (70)
15 2din_A Cell division cycle 5-l 99.7 7.3E-17 2.5E-21 121.9 7.5 60 59-119 2-61 (66)
16 2roh_A RTBP1, telomere binding 99.7 1.5E-17 5E-22 141.0 3.3 80 8-87 26-114 (122)
17 2d9a_A B-MYB, MYB-related prot 99.6 3E-17 1E-21 121.7 2.2 58 7-65 2-59 (60)
18 1gvd_A MYB proto-oncogene prot 99.6 3.9E-17 1.3E-21 117.8 2.0 52 11-63 1-52 (52)
19 2d9a_A B-MYB, MYB-related prot 99.6 3.2E-16 1.1E-20 116.2 5.8 55 61-115 3-58 (60)
20 1ity_A TRF1; helix-turn-helix, 99.6 5E-17 1.7E-21 123.9 1.5 63 8-70 5-68 (69)
21 1guu_A C-MYB, MYB proto-oncoge 99.6 5.8E-17 2E-21 116.8 0.9 52 11-63 1-52 (52)
22 1guu_A C-MYB, MYB proto-oncoge 99.6 9.3E-16 3.2E-20 110.5 6.3 50 64-113 1-51 (52)
23 1ity_A TRF1; helix-turn-helix, 99.6 1.6E-15 5.5E-20 115.5 7.4 62 59-120 3-67 (69)
24 1gvd_A MYB proto-oncogene prot 99.6 1.7E-15 5.8E-20 109.2 6.2 50 64-113 1-51 (52)
25 1w0t_A Telomeric repeat bindin 99.6 3.9E-15 1.3E-19 107.9 6.7 49 65-113 1-52 (53)
26 1x41_A Transcriptional adaptor 99.6 6.9E-16 2.4E-20 114.8 1.8 56 7-63 2-57 (60)
27 3sjm_A Telomeric repeat-bindin 99.6 4.2E-16 1.4E-20 118.0 0.6 56 10-65 8-64 (64)
28 1x41_A Transcriptional adaptor 99.5 7.1E-15 2.4E-19 109.3 6.8 53 61-113 3-56 (60)
29 2yum_A ZZZ3 protein, zinc fing 99.5 9.5E-15 3.3E-19 112.7 6.5 58 61-118 3-66 (75)
30 3sjm_A Telomeric repeat-bindin 99.5 1.9E-14 6.4E-19 108.9 6.3 52 63-114 8-62 (64)
31 2yum_A ZZZ3 protein, zinc fing 99.5 1.6E-15 5.4E-20 117.1 -0.4 62 7-69 2-68 (75)
32 3osg_A MYB21; transcription-DN 99.5 8.8E-15 3E-19 123.2 4.0 70 61-130 6-75 (126)
33 1w0t_A Telomeric repeat bindin 99.5 2.7E-15 9.2E-20 108.8 0.6 50 12-61 1-51 (53)
34 1gv2_A C-MYB, MYB proto-oncoge 99.5 9.3E-15 3.2E-19 118.8 3.2 68 63-130 1-69 (105)
35 2elk_A SPCC24B10.08C protein; 99.5 5.2E-14 1.8E-18 104.1 6.9 50 62-111 5-56 (58)
36 2elk_A SPCC24B10.08C protein; 99.5 5.4E-15 1.8E-19 109.5 1.2 52 9-60 5-56 (58)
37 2ltp_A Nuclear receptor corepr 99.2 4.3E-15 1.5E-19 118.9 0.0 56 59-114 9-64 (89)
38 2din_A Cell division cycle 5-l 99.5 2E-15 6.9E-20 113.9 -2.0 58 8-68 4-61 (66)
39 2k9n_A MYB24; R2R3 domain, DNA 99.4 4.1E-14 1.4E-18 115.9 3.4 64 66-129 1-65 (107)
40 2cu7_A KIAA1915 protein; nucle 99.4 1.5E-14 5.1E-19 111.1 -0.5 58 7-66 3-60 (72)
41 2aje_A Telomere repeat-binding 99.4 9.6E-14 3.3E-18 114.8 3.0 80 7-86 7-95 (105)
42 3zqc_A MYB3; transcription-DNA 99.4 8.5E-14 2.9E-18 117.8 1.8 65 66-130 2-67 (131)
43 2cqr_A RSGI RUH-043, DNAJ homo 99.4 6.7E-13 2.3E-17 103.1 6.0 52 61-112 13-68 (73)
44 2ckx_A NGTRF1, telomere bindin 99.3 2.8E-13 9.5E-18 107.7 2.7 69 14-83 1-79 (83)
45 2yus_A SWI/SNF-related matrix- 99.3 1.2E-12 4.2E-17 102.8 5.2 48 63-110 15-62 (79)
46 2llk_A Cyclin-D-binding MYB-li 99.3 5.8E-13 2E-17 103.5 1.7 56 8-67 18-73 (73)
47 1ign_A Protein (RAP1); RAP1,ye 99.3 1.8E-12 6.3E-17 120.6 4.8 67 62-129 4-76 (246)
48 2ckx_A NGTRF1, telomere bindin 99.3 6.7E-12 2.3E-16 99.7 6.8 48 67-114 1-53 (83)
49 1x58_A Hypothetical protein 49 99.3 6.1E-12 2.1E-16 95.0 6.0 50 64-113 6-58 (62)
50 2yus_A SWI/SNF-related matrix- 99.3 8.3E-13 2.9E-17 103.8 1.3 53 5-59 10-62 (79)
51 2aje_A Telomere repeat-binding 99.2 1.1E-11 3.9E-16 102.4 7.1 53 61-113 8-65 (105)
52 2juh_A Telomere binding protei 99.2 5.6E-12 1.9E-16 106.6 5.3 54 60-113 11-69 (121)
53 2cjj_A Radialis; plant develop 99.2 1.7E-11 5.9E-16 99.2 7.1 58 65-122 7-69 (93)
54 2ltp_A Nuclear receptor corepr 98.8 1.4E-12 4.7E-17 104.4 0.0 54 7-62 10-63 (89)
55 2roh_A RTBP1, telomere binding 99.2 1.3E-11 4.4E-16 104.6 5.7 54 61-114 26-84 (122)
56 2cqr_A RSGI RUH-043, DNAJ homo 99.2 2.1E-12 7E-17 100.4 -0.3 56 5-61 10-68 (73)
57 3hm5_A DNA methyltransferase 1 99.0 8.8E-10 3E-14 89.3 6.6 67 49-119 17-88 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.0 1.4E-09 4.8E-14 81.1 7.2 48 65-112 11-58 (61)
59 2cqq_A RSGI RUH-037, DNAJ homo 98.9 1.2E-09 4.1E-14 84.5 6.2 57 63-120 5-65 (72)
60 2cjj_A Radialis; plant develop 98.8 3.7E-10 1.3E-14 91.4 -0.5 49 11-60 6-57 (93)
61 2iw5_B Protein corest, REST co 98.7 1.4E-08 4.8E-13 93.9 6.6 50 64-113 131-180 (235)
62 2eqr_A N-COR1, N-COR, nuclear 98.7 6.3E-09 2.2E-13 77.5 1.9 54 5-60 4-57 (61)
63 1x58_A Hypothetical protein 49 98.6 8.2E-09 2.8E-13 77.9 1.6 50 10-61 5-57 (62)
64 2xag_B REST corepressor 1; ami 98.5 9.8E-08 3.4E-12 96.6 5.6 46 67-112 381-426 (482)
65 1wgx_A KIAA1903 protein; MYB D 98.4 3E-07 1E-11 71.4 6.3 47 66-112 8-58 (73)
66 2cqq_A RSGI RUH-037, DNAJ homo 98.4 3.4E-08 1.1E-12 76.4 0.1 52 8-61 3-57 (72)
67 1fex_A TRF2-interacting telome 98.4 4.3E-07 1.5E-11 67.5 5.1 47 66-112 2-58 (59)
68 1fex_A TRF2-interacting telome 98.3 9.1E-08 3.1E-12 71.2 0.0 48 13-61 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.1 3.6E-07 1.2E-11 71.0 0.3 48 13-61 8-58 (73)
70 2yqk_A Arginine-glutamic acid 98.1 4.6E-06 1.6E-10 62.5 6.3 50 61-110 4-54 (63)
71 1ug2_A 2610100B20RIK gene prod 98.1 4.8E-06 1.6E-10 67.1 5.9 47 67-113 34-83 (95)
72 2iw5_B Protein corest, REST co 98.1 7.3E-07 2.5E-11 82.5 1.2 53 7-61 127-179 (235)
73 2lr8_A CAsp8-associated protei 97.1 2.1E-06 7.1E-11 65.8 0.0 44 68-112 16-62 (70)
74 4eef_G F-HB80.4, designed hema 97.8 2.7E-06 9.4E-11 66.1 0.5 43 66-108 20-66 (74)
75 4iej_A DNA methyltransferase 1 97.8 6.2E-05 2.1E-09 60.9 7.8 61 55-119 23-88 (93)
76 1ofc_X ISWI protein; nuclear p 97.8 3.1E-05 1E-09 74.5 6.7 99 14-113 111-275 (304)
77 4eef_G F-HB80.4, designed hema 97.8 4.1E-06 1.4E-10 65.1 0.2 45 12-57 19-66 (74)
78 4a69_C Nuclear receptor corepr 97.6 0.00011 3.7E-09 59.2 6.2 45 66-110 43-87 (94)
79 2crg_A Metastasis associated p 97.6 0.00015 5.1E-09 55.4 6.5 44 66-109 8-52 (70)
80 2yqk_A Arginine-glutamic acid 97.4 5.4E-05 1.9E-09 56.6 1.8 50 7-58 3-53 (63)
81 2ebi_A DNA binding protein GT- 97.1 0.00053 1.8E-08 53.5 4.7 48 66-113 4-65 (86)
82 2xag_B REST corepressor 1; ami 97.1 0.00013 4.6E-09 73.9 1.3 49 10-60 377-425 (482)
83 3hm5_A DNA methyltransferase 1 96.9 0.00015 5E-09 58.7 0.4 49 11-60 28-80 (93)
84 4a69_C Nuclear receptor corepr 96.5 0.00059 2E-08 54.9 0.9 43 13-57 43-85 (94)
85 2crg_A Metastasis associated p 96.5 0.001 3.6E-08 50.6 2.0 46 11-58 6-52 (70)
86 2y9y_A Imitation switch protei 96.3 0.0058 2E-07 60.2 6.7 101 14-114 124-292 (374)
87 2ebi_A DNA binding protein GT- 96.2 0.00029 1E-08 55.0 -2.3 50 11-60 2-63 (86)
88 1ug2_A 2610100B20RIK gene prod 96.2 0.002 6.9E-08 51.9 2.2 48 10-58 30-79 (95)
89 2lr8_A CAsp8-associated protei 95.0 0.001 3.6E-08 50.9 0.0 48 12-61 13-62 (70)
90 4b4c_A Chromodomain-helicase-D 94.9 0.02 6.8E-07 50.9 4.1 38 4-41 125-162 (211)
91 1irz_A ARR10-B; helix-turn-hel 94.8 0.079 2.7E-06 39.9 6.6 48 64-111 5-57 (64)
92 1ofc_X ISWI protein; nuclear p 92.3 0.21 7.2E-06 47.9 6.4 48 66-113 110-158 (304)
93 4b4c_A Chromodomain-helicase-D 92.1 0.24 8.3E-06 43.8 6.2 51 64-114 5-60 (211)
94 4iej_A DNA methyltransferase 1 91.8 0.036 1.2E-06 44.7 0.4 48 11-59 28-79 (93)
95 2xb0_X Chromo domain-containin 91.6 0.085 2.9E-06 49.8 2.7 28 14-41 169-196 (270)
96 1irz_A ARR10-B; helix-turn-hel 81.7 0.41 1.4E-05 36.0 0.8 49 9-57 3-54 (64)
97 2xb0_X Chromo domain-containin 77.3 5.6 0.00019 37.4 7.3 48 66-113 3-55 (270)
98 2o8x_A Probable RNA polymerase 73.1 6 0.00021 27.7 5.0 41 72-113 18-58 (70)
99 1ku3_A Sigma factor SIGA; heli 69.8 7.7 0.00026 28.0 5.1 42 71-113 12-57 (73)
100 2p7v_B Sigma-70, RNA polymeras 66.1 7.9 0.00027 27.5 4.4 41 72-113 8-52 (68)
101 2rq5_A Protein jumonji; develo 60.9 30 0.001 28.5 7.6 76 12-113 6-96 (121)
102 3hug_A RNA polymerase sigma fa 58.1 16 0.00054 27.5 5.0 41 72-113 40-80 (92)
103 2rq5_A Protein jumonji; develo 57.1 1.7 5.9E-05 36.1 -0.7 57 23-82 46-113 (121)
104 2li6_A SWI/SNF chromatin-remod 55.7 9.6 0.00033 30.9 3.6 38 76-113 53-98 (116)
105 2lm1_A Lysine-specific demethy 52.9 22 0.00076 28.1 5.3 38 76-113 48-97 (107)
106 2jrz_A Histone demethylase jar 51.5 20 0.00069 29.0 4.9 38 76-113 44-93 (117)
107 2y9y_A Imitation switch protei 50.2 26 0.00088 34.5 6.3 47 66-112 123-171 (374)
108 1tty_A Sigma-A, RNA polymerase 49.2 28 0.00094 26.0 5.1 41 72-113 21-65 (87)
109 1or7_A Sigma-24, RNA polymeras 48.6 29 0.001 28.5 5.7 31 82-113 153-183 (194)
110 1x3u_A Transcriptional regulat 47.9 37 0.0013 24.2 5.5 42 69-113 17-58 (79)
111 2cxy_A BAF250B subunit, HBAF25 47.5 27 0.00091 28.6 5.1 39 76-114 55-105 (125)
112 2eqy_A RBP2 like, jumonji, at 47.3 26 0.0009 28.6 5.0 38 76-113 46-95 (122)
113 2li6_A SWI/SNF chromatin-remod 45.4 2.9 9.9E-05 34.1 -1.1 39 23-62 53-98 (116)
114 3ulq_B Transcriptional regulat 45.1 46 0.0016 25.4 5.8 45 66-113 27-71 (90)
115 1kkx_A Transcription regulator 44.2 18 0.00061 29.9 3.5 38 77-114 53-98 (123)
116 3c57_A Two component transcrip 43.4 39 0.0013 25.7 5.2 43 68-113 27-69 (95)
117 3i4p_A Transcriptional regulat 42.2 23 0.00079 29.5 4.0 45 72-117 3-48 (162)
118 1fse_A GERE; helix-turn-helix 41.8 42 0.0014 23.4 4.9 44 67-113 10-53 (74)
119 1je8_A Nitrate/nitrite respons 41.8 39 0.0013 25.0 4.9 43 68-113 21-63 (82)
120 1xsv_A Hypothetical UPF0122 pr 41.6 48 0.0017 26.3 5.7 41 72-113 28-68 (113)
121 1ig6_A MRF-2, modulator recogn 40.3 5 0.00017 32.1 -0.5 40 23-62 37-87 (107)
122 1c20_A DEAD ringer protein; DN 39.4 42 0.0014 27.5 5.1 38 76-113 56-106 (128)
123 3mzy_A RNA polymerase sigma-H 39.3 40 0.0014 26.5 4.9 30 83-113 122-151 (164)
124 3cz6_A DNA-binding protein RAP 39.0 18 0.00061 31.9 2.8 24 9-32 110-141 (168)
125 2k27_A Paired box protein PAX- 38.9 1E+02 0.0036 25.0 7.5 91 13-108 23-133 (159)
126 2jpc_A SSRB; DNA binding prote 38.7 51 0.0017 22.3 4.7 38 74-113 3-40 (61)
127 2jxj_A Histone demethylase jar 38.6 18 0.00062 28.0 2.6 38 76-113 40-89 (96)
128 1rp3_A RNA polymerase sigma fa 38.5 49 0.0017 27.9 5.6 40 73-113 191-230 (239)
129 2yqf_A Ankyrin-1; death domain 38.2 47 0.0016 26.3 5.1 35 70-105 14-48 (111)
130 1k78_A Paired box protein PAX5 37.9 64 0.0022 25.8 6.0 78 13-95 30-118 (149)
131 1u78_A TC3 transposase, transp 37.7 1.2E+02 0.004 23.5 7.4 88 14-107 5-100 (141)
132 2kk0_A AT-rich interactive dom 36.9 46 0.0016 28.0 5.1 39 76-114 68-119 (145)
133 2jrz_A Histone demethylase jar 35.5 4.2 0.00015 33.2 -1.6 40 23-62 44-93 (117)
134 2q1z_A RPOE, ECF SIGE; ECF sig 34.8 20 0.00068 29.4 2.4 30 83-113 149-178 (184)
135 1ig6_A MRF-2, modulator recogn 33.9 29 0.00098 27.5 3.1 38 76-113 37-87 (107)
136 1c20_A DEAD ringer protein; DN 32.5 4.8 0.00016 33.3 -1.8 40 23-62 56-106 (128)
137 2kk0_A AT-rich interactive dom 32.3 9.7 0.00033 32.2 0.1 57 23-79 68-137 (145)
138 2of5_H Leucine-rich repeat and 32.1 50 0.0017 26.6 4.4 30 74-104 13-42 (118)
139 2rnj_A Response regulator prot 31.8 47 0.0016 24.8 3.9 43 68-113 29-71 (91)
140 2e1c_A Putative HTH-type trans 31.1 58 0.002 27.5 4.8 45 71-116 26-71 (171)
141 1s7o_A Hypothetical UPF0122 pr 30.6 84 0.0029 25.0 5.4 43 69-113 23-65 (113)
142 2o71_A Death domain-containing 29.6 66 0.0023 26.1 4.7 27 76-103 26-52 (115)
143 2dbb_A Putative HTH-type trans 29.0 1.1E+02 0.0039 24.5 6.1 44 72-116 9-53 (151)
144 2cyy_A Putative HTH-type trans 28.4 77 0.0026 25.6 5.0 44 72-116 7-51 (151)
145 1p4w_A RCSB; solution structur 27.7 1.2E+02 0.004 23.5 5.7 45 66-113 32-76 (99)
146 3cz6_A DNA-binding protein RAP 27.6 42 0.0014 29.5 3.3 27 52-78 99-126 (168)
147 2of5_A Death domain-containing 27.6 63 0.0022 26.1 4.2 37 63-103 16-52 (114)
148 3e7l_A Transcriptional regulat 23.5 1.3E+02 0.0045 21.0 4.9 29 72-101 19-47 (63)
149 1tc3_C Protein (TC3 transposas 23.0 1.4E+02 0.0047 18.3 5.7 38 68-107 5-42 (51)
150 1wxp_A THO complex subunit 1; 22.9 87 0.003 24.7 4.2 31 74-105 18-48 (110)
151 3i4p_A Transcriptional regulat 22.7 11 0.00037 31.6 -1.4 39 19-59 3-41 (162)
152 1k78_A Paired box protein PAX5 22.7 2.1E+02 0.0073 22.6 6.6 38 66-105 30-67 (149)
153 1ntc_A Protein (nitrogen regul 22.4 35 0.0012 26.0 1.6 29 19-48 51-79 (91)
154 1ntc_A Protein (nitrogen regul 21.8 1.4E+02 0.0048 22.5 5.0 35 71-106 50-84 (91)
155 3clo_A Transcriptional regulat 20.5 1.3E+02 0.0044 26.6 5.2 43 68-113 197-239 (258)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=6.3e-34 Score=232.36 Aligned_cols=105 Identities=50% Similarity=0.936 Sum_probs=99.6
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCCCHH
Q 039070 10 KVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWA 89 (338)
Q Consensus 10 ~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs 89 (338)
.+++|+||+|||++|+++|++||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|++++.+||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 37899999999999999999999889999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHHHhhhHH
Q 039070 90 QIAKHLPGRTDNEVKNFWNSCIKKKL 115 (338)
Q Consensus 90 ~IA~~LpgRT~~qcKnRW~slLkkkl 115 (338)
.||++|||||+++|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998763
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=2.6e-33 Score=237.96 Aligned_cols=108 Identities=34% Similarity=0.669 Sum_probs=103.9
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 039070 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIA 92 (338)
Q Consensus 13 kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA 92 (338)
||+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++|+||+|||++|+++|.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHhhhHHHhCCCC
Q 039070 93 KHLPGRTDNEVKNFWNSCIKKKLIARGID 121 (338)
Q Consensus 93 ~~LpgRT~~qcKnRW~slLkkkl~~~g~~ 121 (338)
++|+|||+++|++||++++++++....++
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~ 109 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNH 109 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTS
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCc
Confidence 99999999999999999999987766554
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=1.8e-33 Score=231.41 Aligned_cols=103 Identities=28% Similarity=0.568 Sum_probs=99.7
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCCCHHHHH
Q 039070 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIA 92 (338)
Q Consensus 13 kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA 92 (338)
||+||+|||++|+++|++||.++|..||+.|| +|+++||++||.++|+|.+++|+||+|||++|+++|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHhhhHHH
Q 039070 93 KHLPGRTDNEVKNFWNSCIKKKLI 116 (338)
Q Consensus 93 ~~LpgRT~~qcKnRW~slLkkkl~ 116 (338)
++|||||+++|++||+.++++..+
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHH
Confidence 999999999999999999987654
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.98 E-value=1.9e-33 Score=237.47 Aligned_cols=111 Identities=50% Similarity=0.954 Sum_probs=101.9
Q ss_pred CCCcc------CCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHH
Q 039070 4 NCCSK------QKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERII 77 (338)
Q Consensus 4 ~~c~K------~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~L 77 (338)
+|.++ |.+++|+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|.+++|+||+|||++|
T Consensus 12 qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L 90 (128)
T 1h8a_C 12 QCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRII 90 (128)
T ss_dssp ----------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHH
T ss_pred HHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHH
Confidence 56665 788999999999999999999999889999999998 99999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHH
Q 039070 78 IDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115 (338)
Q Consensus 78 l~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl 115 (338)
++++++||++|+.||++|||||+++|++||+.++++++
T Consensus 91 ~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 91 YQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999998753
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.98 E-value=6.7e-33 Score=234.21 Aligned_cols=105 Identities=35% Similarity=0.700 Sum_probs=101.2
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCC
Q 039070 7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGN 86 (338)
Q Consensus 7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~ 86 (338)
.+++.++|+||+|||++|+++|++||. +|..||+.|+ +|+++||++||.++|+|.+++|+||+|||++|++++.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467899999999999999999999997 9999999998 99999999999999999999999999999999999999999
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 87 RWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 87 kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+|+.||++|+|||+++||+||+.++++
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998876
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=9.4e-32 Score=234.47 Aligned_cols=119 Identities=29% Similarity=0.623 Sum_probs=75.9
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCC-CHH
Q 039070 11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGN-RWA 89 (338)
Q Consensus 11 lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~-kWs 89 (338)
+++++||+|||++|+++|++||.++|..||+.|+ +|+++||++||.++|+|.+++|+||+|||++|+++|.+||. +|+
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 7899999999999999999999889999999998 99999999999999999999999999999999999999996 699
Q ss_pred HHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCCCC
Q 039070 90 QIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISP 130 (338)
Q Consensus 90 ~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l~p 130 (338)
.||++|+|||+.+|++||+++|.+.+.++.|+++++..|..
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 123 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 123 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHH
Confidence 99999999999999999999999999999999998876643
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=1e-30 Score=227.87 Aligned_cols=107 Identities=50% Similarity=0.921 Sum_probs=102.1
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCCC
Q 039070 8 KQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNR 87 (338)
Q Consensus 8 K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~k 87 (338)
++.+++|+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|++++++||++
T Consensus 53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~ 131 (159)
T 1h89_C 53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 131 (159)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCC
Confidence 3788999999999999999999999878999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhhhHH
Q 039070 88 WAQIAKHLPGRTDNEVKNFWNSCIKKKL 115 (338)
Q Consensus 88 Ws~IA~~LpgRT~~qcKnRW~slLkkkl 115 (338)
|+.||++|||||+++||+||+.++|+++
T Consensus 132 W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 132 WAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999998753
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.86 E-value=9.7e-23 Score=171.84 Aligned_cols=91 Identities=25% Similarity=0.595 Sum_probs=66.0
Q ss_pred ccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHHh
Q 039070 39 VPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSCIKKKLIA 117 (338)
Q Consensus 39 IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~ 117 (338)
||+.|+ +|++.||++||.++|+|.+++|+||+|||++|+++|.+||. +|..||..|+|||+.+|++||+++|.+.+.+
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788888 99999999999999999999999999999999999999996 6999999999999999999999999999999
Q ss_pred CCCCcCCCCCCCC
Q 039070 118 RGIDPNTHNLISP 130 (338)
Q Consensus 118 ~g~~~~e~~~l~p 130 (338)
+.|+++|+..|..
T Consensus 80 ~~WT~eEd~~L~~ 92 (128)
T 1h8a_C 80 TSWTEEEDRIIYQ 92 (128)
T ss_dssp SCCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHH
Confidence 9999999877643
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7.8e-22 Score=150.83 Aligned_cols=67 Identities=30% Similarity=0.649 Sum_probs=64.5
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHH
Q 039070 7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEE 74 (338)
Q Consensus 7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EED 74 (338)
+.+.+++|+||+|||++|+++|++||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 45789999999999999999999999889999999999 99999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.73 E-value=2.3e-18 Score=160.13 Aligned_cols=106 Identities=17% Similarity=0.294 Sum_probs=92.6
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCC-----cccccccccccccCccccceeecccCCCCC-----------------
Q 039070 8 KQKVKRGLWSPEEDEKLIKHVTTHGHGS-----WSSVPKLAGLQRCGKSCRLRWINYLRPDLK----------------- 65 (338)
Q Consensus 8 K~~lkkg~WT~EEDe~L~~lV~k~G~~n-----W~~IAk~lg~~Rt~kQCr~RW~n~L~p~lk----------------- 65 (338)
.+.+++++||+|||++|+++|+++|..+ |.+||+.|+ ||++.|||.||+.+|++.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4678899999999999999999998642 999999999 99999999999999999986
Q ss_pred ------------CCCCChHHHHHHHHHHHH-c------------------------------------------------
Q 039070 66 ------------RGSFTEQEERIIIDIHRI-L------------------------------------------------ 84 (338)
Q Consensus 66 ------------kg~WT~EEDe~Ll~lv~~-~------------------------------------------------ 84 (338)
+.+||.+||-.|+..+++ +
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 899999999999998877 1
Q ss_pred -----CC----CHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 039070 85 -----GN----RWAQIAKHLPGRTDNEVKNFWNSCIKKK 114 (338)
Q Consensus 85 -----G~----kWs~IA~~LpgRT~~qcKnRW~slLkkk 114 (338)
|. .|..||+.+|+||.+++|+||+..++..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 6999999999999999999999988764
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.72 E-value=3.6e-18 Score=132.88 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=47.8
Q ss_pred cceeecccCCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070 53 RLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIK 112 (338)
Q Consensus 53 r~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLk 112 (338)
.-||.++|+|.+++|+||+|||++|++++++||++|+.||+.| |||+++||+||+.+.+
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999 9999999999987543
No 12
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.70 E-value=2.4e-17 Score=126.77 Aligned_cols=66 Identities=26% Similarity=0.350 Sum_probs=60.3
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCC
Q 039070 60 LRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHN 126 (338)
Q Consensus 60 L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~ 126 (338)
.+|.+++++||+|||++|+++|.+||++|..||++|+|||+++||+||+.++++.++. |+++.+..
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~s 68 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETPN 68 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCSC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCccc
Confidence 5789999999999999999999999999999999999999999999999999987666 77766544
No 13
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.69 E-value=2.8e-18 Score=145.19 Aligned_cols=83 Identities=22% Similarity=0.354 Sum_probs=78.0
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccc----cccccCccccceeecccC-----CCCCCC-CCChHHHHH
Q 039070 7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLA----GLQRCGKSCRLRWINYLR-----PDLKRG-SFTEQEERI 76 (338)
Q Consensus 7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~l----g~~Rt~kQCr~RW~n~L~-----p~lkkg-~WT~EEDe~ 76 (338)
-+++.++++||+|||+.|+++|++||.|+|..|++.+ + +|++.+|++||+++++ |.+++| +|+++|+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 3578999999999999999999999999999999975 4 8999999999999998 999999 999999999
Q ss_pred HHHHHHHcCCCHHH
Q 039070 77 IIDIHRILGNRWAQ 90 (338)
Q Consensus 77 Ll~lv~~~G~kWs~ 90 (338)
|+.++..||++|++
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999987
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.1e-17 Score=125.28 Aligned_cols=65 Identities=18% Similarity=0.335 Sum_probs=61.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCC
Q 039070 61 RPDLKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTH 125 (338)
Q Consensus 61 ~p~lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~ 125 (338)
.|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|++.++++.|+++++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 7999999999999999999999999999999999998876
No 15
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=7.3e-17 Score=121.86 Aligned_cols=60 Identities=17% Similarity=0.347 Sum_probs=56.9
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCC
Q 039070 59 YLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARG 119 (338)
Q Consensus 59 ~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g 119 (338)
+|+|.+++++||+|||++|++++++||++|.+||+ ++|||+.|||+||+.++++.+++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999877653
No 16
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.67 E-value=1.5e-17 Score=141.02 Aligned_cols=80 Identities=23% Similarity=0.292 Sum_probs=73.6
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccc---ccccCccccceeeccc-----CCCCCCCCCChHH-HHHHH
Q 039070 8 KQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAG---LQRCGKSCRLRWINYL-----RPDLKRGSFTEQE-ERIII 78 (338)
Q Consensus 8 K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg---~~Rt~kQCr~RW~n~L-----~p~lkkg~WT~EE-De~Ll 78 (338)
+.+.++++||+|||+.|+++|++||.|+|..|++..+ .+|++.||++||++++ +|.+++|.|+++| +.+|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 4578899999999999999999999999999998641 3899999999999999 8999999999999 89999
Q ss_pred HHHHHcCCC
Q 039070 79 DIHRILGNR 87 (338)
Q Consensus 79 ~lv~~~G~k 87 (338)
+++..||++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999974
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=3e-17 Score=121.65 Aligned_cols=58 Identities=26% Similarity=0.495 Sum_probs=54.9
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCC
Q 039070 7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLK 65 (338)
Q Consensus 7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lk 65 (338)
..+.+++++||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|.++
T Consensus 2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 46789999999999999999999999889999999998 99999999999999999875
No 18
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.64 E-value=3.9e-17 Score=117.83 Aligned_cols=52 Identities=44% Similarity=0.831 Sum_probs=49.7
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCC
Q 039070 11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63 (338)
Q Consensus 11 lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~ 63 (338)
+++|+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999888999999998 999999999999999984
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=3.2e-16 Score=116.15 Aligned_cols=55 Identities=22% Similarity=0.453 Sum_probs=51.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhHH
Q 039070 61 RPDLKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCIKKKL 115 (338)
Q Consensus 61 ~p~lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slLkkkl 115 (338)
+|.+++++||+|||++|+++|.+|| ++|+.||++|+|||+.|||+||+++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999999999999 599999999999999999999999987643
No 20
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.62 E-value=5e-17 Score=123.88 Aligned_cols=63 Identities=25% Similarity=0.366 Sum_probs=58.6
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccc-cccCccccceeecccCCCCCCCCCC
Q 039070 8 KQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGL-QRCGKSCRLRWINYLRPDLKRGSFT 70 (338)
Q Consensus 8 K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~-~Rt~kQCr~RW~n~L~p~lkkg~WT 70 (338)
+++.++++||+|||++|+++|++||.++|..||+.|++ +|++.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 46789999999999999999999998899999999976 8999999999999999999988764
No 21
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.61 E-value=5.8e-17 Score=116.80 Aligned_cols=52 Identities=33% Similarity=0.698 Sum_probs=48.4
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCC
Q 039070 11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63 (338)
Q Consensus 11 lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~ 63 (338)
+++++||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5789999999999999999999889999999998 999999999999999984
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.60 E-value=9.3e-16 Score=110.45 Aligned_cols=50 Identities=26% Similarity=0.531 Sum_probs=46.2
Q ss_pred CCCCCCChHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 64 LKRGSFTEQEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 64 lkkg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+++++||+|||++|+++|.+||. +|+.||++|+|||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999998 899999999999999999999999864
No 23
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.60 E-value=1.6e-15 Score=115.53 Aligned_cols=62 Identities=26% Similarity=0.356 Sum_probs=55.9
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHcC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhhHHHhCCC
Q 039070 59 YLRPDLKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLP--GRTDNEVKNFWNSCIKKKLIARGI 120 (338)
Q Consensus 59 ~L~p~lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~Lp--gRT~~qcKnRW~slLkkkl~~~g~ 120 (338)
...+..++++||+|||++|+++|.+|| ++|+.||++|+ |||+.|||+||+++|++.+.+...
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 356778899999999999999999999 69999999999 999999999999999987766543
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.58 E-value=1.7e-15 Score=109.19 Aligned_cols=50 Identities=32% Similarity=0.723 Sum_probs=47.0
Q ss_pred CCCCCCChHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 64 LKRGSFTEQEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 64 lkkg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+++|+||+|||++|+++|.+||. +|+.||++|+|||+.|||+||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 699999999999999999999998864
No 25
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.57 E-value=3.9e-15 Score=107.94 Aligned_cols=49 Identities=27% Similarity=0.430 Sum_probs=46.5
Q ss_pred CCCCCChHHHHHHHHHHHHcC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhh
Q 039070 65 KRGSFTEQEERIIIDIHRILG-NRWAQIAKHLP--GRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 65 kkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~Lp--gRT~~qcKnRW~slLkk 113 (338)
++++||+|||++|+++|.+|| ++|+.||..|+ |||+.||++||++++|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 579999999999999999999 69999999999 99999999999999875
No 26
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=6.9e-16 Score=114.79 Aligned_cols=56 Identities=20% Similarity=0.491 Sum_probs=52.6
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCC
Q 039070 7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63 (338)
Q Consensus 7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~ 63 (338)
+.+.+++++||+|||++|+++|++||.++|.+||+.|+ +|++.||++||.++|.+.
T Consensus 2 ss~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 2 SSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 45789999999999999999999999889999999998 999999999999999865
No 27
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.55 E-value=4.2e-16 Score=117.98 Aligned_cols=56 Identities=25% Similarity=0.447 Sum_probs=49.6
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCccccccccc-ccccCccccceeecccCCCCC
Q 039070 10 KVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAG-LQRCGKSCRLRWINYLRPDLK 65 (338)
Q Consensus 10 ~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg-~~Rt~kQCr~RW~n~L~p~lk 65 (338)
..+|++||+|||++|+++|++||.++|..||+.++ .+|++.||++||+++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 45789999999999999999999989999999754 279999999999999998774
No 28
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=7.1e-15 Score=109.29 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=49.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 61 RPDLKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 61 ~p~lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
.+.+++++||+|||++|+++|.+|| ++|.+||++|+|||+.|||+||++++..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3678899999999999999999999 7999999999999999999999988753
No 29
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=9.5e-15 Score=112.67 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=53.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHcC------CCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhC
Q 039070 61 RPDLKRGSFTEQEERIIIDIHRILG------NRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIAR 118 (338)
Q Consensus 61 ~p~lkkg~WT~EEDe~Ll~lv~~~G------~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~ 118 (338)
+|.+++++||+|||++|++++.+|| ++|.+||++|+|||+.||++||+.+|++.++.+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999 689999999999999999999999998765443
No 30
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.51 E-value=1.9e-14 Score=108.92 Aligned_cols=52 Identities=25% Similarity=0.408 Sum_probs=46.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHcC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhhH
Q 039070 63 DLKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLP--GRTDNEVKNFWNSCIKKK 114 (338)
Q Consensus 63 ~lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~Lp--gRT~~qcKnRW~slLkkk 114 (338)
..++++||+|||++|+++|.+|| .+|+.||+.++ |||+.|||+||++++|..
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 35789999999999999999999 58999999965 999999999999988764
No 31
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.6e-15 Score=117.05 Aligned_cols=62 Identities=23% Similarity=0.298 Sum_probs=57.5
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCC-----CCcccccccccccccCccccceeecccCCCCCCCCC
Q 039070 7 SKQKVKRGLWSPEEDEKLIKHVTTHGH-----GSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSF 69 (338)
Q Consensus 7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~-----~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~W 69 (338)
+++.+++++||+|||++|+++|++||. .+|..||+.|+ +|++.||+.||++||.+.++.|..
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCC
Confidence 689999999999999999999999996 68999999999 999999999999999988877654
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.49 E-value=8.8e-15 Score=123.19 Aligned_cols=70 Identities=17% Similarity=0.377 Sum_probs=65.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCCCC
Q 039070 61 RPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISP 130 (338)
Q Consensus 61 ~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l~p 130 (338)
.+..++|+||+|||++|+++|.+||.+|..||+.|+|||+.||+.||+++|.+.+.++.|+++|+..|-.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 75 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQ 75 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999999999999999999877643
No 33
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.49 E-value=2.7e-15 Score=108.78 Aligned_cols=50 Identities=30% Similarity=0.477 Sum_probs=46.8
Q ss_pred CccCCCHHHHHHHHHHHHHhCCCCcccccccccc-cccCccccceeecccC
Q 039070 12 KRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGL-QRCGKSCRLRWINYLR 61 (338)
Q Consensus 12 kkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~-~Rt~kQCr~RW~n~L~ 61 (338)
++|+||+|||++|+++|++||.++|..||+.+++ +|++.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999975 6999999999999875
No 34
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.48 E-value=9.3e-15 Score=118.77 Aligned_cols=68 Identities=25% Similarity=0.569 Sum_probs=63.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCCCC
Q 039070 63 DLKRGSFTEQEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISP 130 (338)
Q Consensus 63 ~lkkg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l~p 130 (338)
++++|+||+|||++|+++|.+||. +|..||+.|+|||+.||+.||.++|.+.+.++.|+++++..|..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 69 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 69 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHH
Confidence 378999999999999999999997 69999999999999999999999999999999999999877643
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.48 E-value=5.2e-14 Score=104.13 Aligned_cols=50 Identities=26% Similarity=0.432 Sum_probs=46.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHHcC-CCHHHHHhhCC-CCCHHHHHHHHHHHh
Q 039070 62 PDLKRGSFTEQEERIIIDIHRILG-NRWAQIAKHLP-GRTDNEVKNFWNSCI 111 (338)
Q Consensus 62 p~lkkg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~Lp-gRT~~qcKnRW~slL 111 (338)
..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999 89999999999 999999999998764
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.48 E-value=5.4e-15 Score=109.45 Aligned_cols=52 Identities=23% Similarity=0.484 Sum_probs=47.9
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeeccc
Q 039070 9 QKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60 (338)
Q Consensus 9 ~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L 60 (338)
..+.+++||+|||++|+++|++||.++|..||+.||.+|+++||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3467899999999999999999998899999999987899999999999875
No 37
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.20 E-value=4.3e-15 Score=118.94 Aligned_cols=56 Identities=25% Similarity=0.301 Sum_probs=53.1
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 039070 59 YLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKK 114 (338)
Q Consensus 59 ~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkkk 114 (338)
.+.|.+++|+||+|||++|+++|.+||++|+.||.+|+|||+++|++||++++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56789999999999999999999999999999999999999999999999998864
No 38
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2e-15 Score=113.94 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=52.9
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCC
Q 039070 8 KQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGS 68 (338)
Q Consensus 8 K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~ 68 (338)
.|.+++++||+|||++|+++|+.||. +|.+||+ ++ +|++.||+.||.++|+|.++++.
T Consensus 4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 58899999999999999999999997 9999999 65 69999999999999998776653
No 39
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.43 E-value=4.1e-14 Score=115.88 Aligned_cols=64 Identities=22% Similarity=0.426 Sum_probs=60.3
Q ss_pred CCCCChHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCCC
Q 039070 66 RGSFTEQEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLIS 129 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l~ 129 (338)
+|+||+|||++|+++|.+||. +|..||..|+|||+.||+.||.++|.+.+.++.|+++++..|.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~ 65 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLD 65 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHH
Confidence 689999999999999999996 7999999999999999999999999999999999999987664
No 40
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.41 E-value=1.5e-14 Score=111.10 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=54.0
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCC
Q 039070 7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKR 66 (338)
Q Consensus 7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkk 66 (338)
..|.+++++||+|||++|+++|++||. +|..||+.|+ +|++.||+.||.++|++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999999997 9999999998 999999999999999876665
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.39 E-value=9.6e-14 Score=114.84 Aligned_cols=80 Identities=25% Similarity=0.333 Sum_probs=68.9
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccc---ccccCccccceeeccc-----CCCCCCCCCChHHHHH-H
Q 039070 7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAG---LQRCGKSCRLRWINYL-----RPDLKRGSFTEQEERI-I 77 (338)
Q Consensus 7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg---~~Rt~kQCr~RW~n~L-----~p~lkkg~WT~EEDe~-L 77 (338)
.+++.++++||+|||++|+++|++||.|+|..|++.++ .+||..+|++||++++ +|.+++|.-+++|--. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 45789999999999999999999999999999999652 3899999999999998 6999999888887665 8
Q ss_pred HHHHHHcCC
Q 039070 78 IDIHRILGN 86 (338)
Q Consensus 78 l~lv~~~G~ 86 (338)
++|+..+|+
T Consensus 87 ~~~~~~~~~ 95 (105)
T 2aje_A 87 LNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877663
No 42
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.37 E-value=8.5e-14 Score=117.78 Aligned_cols=65 Identities=23% Similarity=0.535 Sum_probs=61.2
Q ss_pred CCCCChHHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCCCC
Q 039070 66 RGSFTEQEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLISP 130 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l~p 130 (338)
+|+||+|||++|+++|.+|| .+|..||..|+|||+.||+.||.++|.+.+.++.|+++++..|..
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 67 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFR 67 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHH
Confidence 79999999999999999999 679999999999999999999999999999999999999877643
No 43
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.36 E-value=6.7e-13 Score=103.11 Aligned_cols=52 Identities=12% Similarity=0.330 Sum_probs=47.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHcC----CCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070 61 RPDLKRGSFTEQEERIIIDIHRILG----NRWAQIAKHLPGRTDNEVKNFWNSCIK 112 (338)
Q Consensus 61 ~p~lkkg~WT~EEDe~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~slLk 112 (338)
.+...+++||+|||++|++++..|| ++|.+||++|||||+.+|++||+.+++
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3567889999999999999999999 689999999999999999999998765
No 44
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.34 E-value=2.8e-13 Score=107.66 Aligned_cols=69 Identities=23% Similarity=0.394 Sum_probs=60.0
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCccccccc----ccccccCccccceeeccc-----CCCCCCC-CCChHHHHHHHHHHHH
Q 039070 14 GLWSPEEDEKLIKHVTTHGHGSWSSVPKL----AGLQRCGKSCRLRWINYL-----RPDLKRG-SFTEQEERIIIDIHRI 83 (338)
Q Consensus 14 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~----lg~~Rt~kQCr~RW~n~L-----~p~lkkg-~WT~EEDe~Ll~lv~~ 83 (338)
++||+|||++|+++|++||.|+|..|++. ++ +||+.+|++||++++ .|.+++| +..++...+++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999985 66 899999999999988 6776665 5667777889888864
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.32 E-value=1.2e-12 Score=102.83 Aligned_cols=48 Identities=19% Similarity=0.392 Sum_probs=45.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 039070 63 DLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSC 110 (338)
Q Consensus 63 ~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~sl 110 (338)
...+++||+|||++|++++.+||.+|.+||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456899999999999999999999999999999999999999999765
No 46
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.29 E-value=5.8e-13 Score=103.51 Aligned_cols=56 Identities=25% Similarity=0.414 Sum_probs=48.7
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCC
Q 039070 8 KQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 67 (338)
Q Consensus 8 K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg 67 (338)
.|++++|+||+|||++|+++|++||. +|..||+.| +|++.||+.||.. |....+.|
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~G 73 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNTG 73 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccCC
Confidence 48999999999999999999999996 699999998 5999999999974 55555543
No 47
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.27 E-value=1.8e-12 Score=120.59 Aligned_cols=67 Identities=22% Similarity=0.446 Sum_probs=56.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHcCCC------HHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCCCcCCCCCCC
Q 039070 62 PDLKRGSFTEQEERIIIDIHRILGNR------WAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGIDPNTHNLIS 129 (338)
Q Consensus 62 p~lkkg~WT~EEDe~Ll~lv~~~G~k------Ws~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~~~~e~~~l~ 129 (338)
+.+++++||+|||++|+++|++||++ |..||++|+|||+++||+||+++|++++. ..|...++..+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln-~vy~~ded~~Li 76 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE-YVYEVDKFGKLV 76 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC-CEECBCTTSCBC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc-cccccCcchhhh
Confidence 45789999999999999999999975 99999999999999999999999999877 337766665543
No 48
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.26 E-value=6.7e-12 Score=99.67 Aligned_cols=48 Identities=21% Similarity=0.468 Sum_probs=44.9
Q ss_pred CCCChHHHHHHHHHHHHcCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhH
Q 039070 67 GSFTEQEERIIIDIHRILGN-RWAQIAKH----LPGRTDNEVKNFWNSCIKKK 114 (338)
Q Consensus 67 g~WT~EEDe~Ll~lv~~~G~-kWs~IA~~----LpgRT~~qcKnRW~slLkkk 114 (338)
.+||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999997 99999996 89999999999999999754
No 49
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.26 E-value=6.1e-12 Score=94.95 Aligned_cols=50 Identities=22% Similarity=0.378 Sum_probs=46.1
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCHHHHHh---hCCCCCHHHHHHHHHHHhhh
Q 039070 64 LKRGSFTEQEERIIIDIHRILGNRWAQIAK---HLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 64 lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~---~LpgRT~~qcKnRW~slLkk 113 (338)
-++.+||+|||+.|+++|++||.+|+.|+. .+++||+.++|+||++++|+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 467899999999999999999999999994 67999999999999998875
No 50
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.26 E-value=8.3e-13 Score=103.81 Aligned_cols=53 Identities=21% Similarity=0.418 Sum_probs=48.5
Q ss_pred CCccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecc
Q 039070 5 CCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59 (338)
Q Consensus 5 ~c~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~ 59 (338)
.+-+....+++||+|||++|+++|++|| ++|.+||+.|| +|++.||+.||.++
T Consensus 10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 3445667789999999999999999999 79999999999 89999999999997
No 51
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.24 E-value=1.1e-11 Score=102.39 Aligned_cols=53 Identities=21% Similarity=0.393 Sum_probs=48.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHcCC-CHHHHHhhC----CCCCHHHHHHHHHHHhhh
Q 039070 61 RPDLKRGSFTEQEERIIIDIHRILGN-RWAQIAKHL----PGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 61 ~p~lkkg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~L----pgRT~~qcKnRW~slLkk 113 (338)
.+..++++||+|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+++++.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 34678899999999999999999997 999999975 899999999999999975
No 52
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.23 E-value=5.6e-12 Score=106.64 Aligned_cols=54 Identities=22% Similarity=0.441 Sum_probs=50.1
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHcCC-CHHHHHhhC----CCCCHHHHHHHHHHHhhh
Q 039070 60 LRPDLKRGSFTEQEERIIIDIHRILGN-RWAQIAKHL----PGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 60 L~p~lkkg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~L----pgRT~~qcKnRW~slLkk 113 (338)
+.+..++++||+|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+++++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 566788999999999999999999997 999999984 899999999999999984
No 53
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.22 E-value=1.7e-11 Score=99.24 Aligned_cols=58 Identities=24% Similarity=0.487 Sum_probs=49.6
Q ss_pred CCCCCChHHHHHHHHHHHHcC----CCHHHHHhhCCCCCHHHHHHHHHHHhhhH-HHhCCCCc
Q 039070 65 KRGSFTEQEERIIIDIHRILG----NRWAQIAKHLPGRTDNEVKNFWNSCIKKK-LIARGIDP 122 (338)
Q Consensus 65 kkg~WT~EEDe~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~slLkkk-l~~~g~~~ 122 (338)
.+++||+|||++|++++..|| ++|.+||++|||||+++|++||+.+++.. .+..|..|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp 69 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP 69 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 467999999999999999996 67999999999999999999999988764 44455543
No 54
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.84 E-value=1.4e-12 Score=104.37 Aligned_cols=54 Identities=22% Similarity=0.527 Sum_probs=50.3
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccCC
Q 039070 7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRP 62 (338)
Q Consensus 7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p 62 (338)
..+.+++|+||+|||++|+++|..||. +|..||+.|+ +|++.||+.||.++|+.
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 457899999999999999999999997 8999999999 99999999999998864
No 55
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.20 E-value=1.3e-11 Score=104.56 Aligned_cols=54 Identities=22% Similarity=0.423 Sum_probs=48.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHcCC-CHHHHHhhC----CCCCHHHHHHHHHHHhhhH
Q 039070 61 RPDLKRGSFTEQEERIIIDIHRILGN-RWAQIAKHL----PGRTDNEVKNFWNSCIKKK 114 (338)
Q Consensus 61 ~p~lkkg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~L----pgRT~~qcKnRW~slLkkk 114 (338)
....++++||+|||+.|+++|++||. +|+.|++.+ ++||+.+||+||+++++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34567899999999999999999997 899999974 8999999999999999753
No 56
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.18 E-value=2.1e-12 Score=100.36 Aligned_cols=56 Identities=9% Similarity=0.277 Sum_probs=50.6
Q ss_pred CCccCCCCccCCCHHHHHHHHHHHHHhCC---CCcccccccccccccCccccceeecccC
Q 039070 5 CCSKQKVKRGLWSPEEDEKLIKHVTTHGH---GSWSSVPKLAGLQRCGKSCRLRWINYLR 61 (338)
Q Consensus 5 ~c~K~~lkkg~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCr~RW~n~L~ 61 (338)
--+++...+++||+|||++|+++|++||. .+|.+||+.|| ||+..||+.||.+++.
T Consensus 10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 45678889999999999999999999993 47999999999 9999999999998765
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.96 E-value=8.8e-10 Score=89.34 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=60.6
Q ss_pred CccccceeecccCCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHhhC-----CCCCHHHHHHHHHHHhhhHHHhCC
Q 039070 49 GKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHL-----PGRTDNEVKNFWNSCIKKKLIARG 119 (338)
Q Consensus 49 ~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~L-----pgRT~~qcKnRW~slLkkkl~~~g 119 (338)
..=+.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++.+..++
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34567899999976 89999999999999999999999999999 589999999999999998877764
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=1.4e-09 Score=81.08 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=44.3
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070 65 KRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIK 112 (338)
Q Consensus 65 kkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLk 112 (338)
..++||+||++++++++..||.+|..||.+|++||..+|+.+|+...|
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999976544
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.94 E-value=1.2e-09 Score=84.52 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=48.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHcC----CCHHHHHhhCCCCCHHHHHHHHHHHhhhHHHhCCC
Q 039070 63 DLKRGSFTEQEERIIIDIHRILG----NRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIARGI 120 (338)
Q Consensus 63 ~lkkg~WT~EEDe~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~~g~ 120 (338)
..+.+.||.||+++|.+++.+|+ .+|.+||+++ |||..+|+.||+.+.+......|.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G~ 65 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPGM 65 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCCC
Confidence 45678999999999999999997 6799999998 999999999999887654333343
No 60
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.81 E-value=3.7e-10 Score=91.43 Aligned_cols=49 Identities=12% Similarity=0.303 Sum_probs=43.1
Q ss_pred CCccCCCHHHHHHHHHHHHHhCC---CCcccccccccccccCccccceeeccc
Q 039070 11 VKRGLWSPEEDEKLIKHVTTHGH---GSWSSVPKLAGLQRCGKSCRLRWINYL 60 (338)
Q Consensus 11 lkkg~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCr~RW~n~L 60 (338)
-.+++||+|||++|.+++++||. ..|.+||+.+| ||+..||+.||.+++
T Consensus 6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 34689999999999999999983 46999999999 999999999998864
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.72 E-value=1.4e-08 Score=93.94 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=46.7
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 64 LKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 64 lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
...++||+||++++++++++||++|..||+.+++||..|||++|+...|+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 44679999999999999999999999999999999999999999988765
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=6.3e-09 Score=77.51 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=47.8
Q ss_pred CCccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeeccc
Q 039070 5 CCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60 (338)
Q Consensus 5 ~c~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L 60 (338)
--++.+...++||+||++++.+++.+|| .+|..||+.|+ +|+..||+.+|....
T Consensus 4 ~~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 4 GSSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp SCCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 3466677889999999999999999999 59999999999 999999999986543
No 63
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.62 E-value=8.2e-09 Score=77.88 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=44.7
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCccccc---ccccccccCccccceeecccC
Q 039070 10 KVKRGLWSPEEDEKLIKHVTTHGHGSWSSVP---KLAGLQRCGKSCRLRWINYLR 61 (338)
Q Consensus 10 ~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IA---k~lg~~Rt~kQCr~RW~n~L~ 61 (338)
..++++||+|||+.|+++|++||. +|..|+ .++. +|+...+.+||++..+
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 457899999999999999999997 999999 5665 8999999999998654
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.48 E-value=9.8e-08 Score=96.64 Aligned_cols=46 Identities=20% Similarity=0.378 Sum_probs=42.9
Q ss_pred CCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070 67 GSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIK 112 (338)
Q Consensus 67 g~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLk 112 (338)
.+||+||-+++++++++||.+|..||+++++||..|||++|....+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999976544
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.44 E-value=3e-07 Score=71.42 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=42.8
Q ss_pred CCCCChHHHHHHHHHHHHcCC----CHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070 66 RGSFTEQEERIIIDIHRILGN----RWAQIAKHLPGRTDNEVKNFWNSCIK 112 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G~----kWs~IA~~LpgRT~~qcKnRW~slLk 112 (338)
.+.||.+|+++|.+++..|+. +|.+||.+++|||..+|+.||..+++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 468999999999999999983 69999999999999999999988753
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.41 E-value=3.4e-08 Score=76.36 Aligned_cols=52 Identities=13% Similarity=0.253 Sum_probs=45.0
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCC---CCcccccccccccccCccccceeecccC
Q 039070 8 KQKVKRGLWSPEEDEKLIKHVTTHGH---GSWSSVPKLAGLQRCGKSCRLRWINYLR 61 (338)
Q Consensus 8 K~~lkkg~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCr~RW~n~L~ 61 (338)
....+++.||.|||++|.+++++|+. ..|.+||+.+| |+..+|+.||.....
T Consensus 3 ~~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 3 SGSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 35567889999999999999999984 45999999975 999999999987654
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.35 E-value=4.3e-07 Score=67.52 Aligned_cols=47 Identities=21% Similarity=0.400 Sum_probs=42.8
Q ss_pred CCCCChHHHHHHHHHHHHc--------CCC-HHHHHh-hCCCCCHHHHHHHHHHHhh
Q 039070 66 RGSFTEQEERIIIDIHRIL--------GNR-WAQIAK-HLPGRTDNEVKNFWNSCIK 112 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~--------G~k-Ws~IA~-~LpgRT~~qcKnRW~slLk 112 (338)
|.+||+|||+.|++.|.+| |+. |..+|+ .++++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 655 999999 7999999999999987664
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.29 E-value=9.1e-08 Score=71.20 Aligned_cols=48 Identities=23% Similarity=0.399 Sum_probs=42.5
Q ss_pred ccCCCHHHHHHHHHHHHHh--------CCCCcccccc-cccccccCccccceeecccC
Q 039070 13 RGLWSPEEDEKLIKHVTTH--------GHGSWSSVPK-LAGLQRCGKSCRLRWINYLR 61 (338)
Q Consensus 13 kg~WT~EEDe~L~~lV~k~--------G~~nW~~IAk-~lg~~Rt~kQCr~RW~n~L~ 61 (338)
|.+||+|||+.|+++|.+| |..-|..+++ .++ .++..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 6789999999999999999 3334999999 787 9999999999999875
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.13 E-value=3.6e-07 Score=70.99 Aligned_cols=48 Identities=25% Similarity=0.484 Sum_probs=43.1
Q ss_pred ccCCCHHHHHHHHHHHHHhCC---CCcccccccccccccCccccceeecccC
Q 039070 13 RGLWSPEEDEKLIKHVTTHGH---GSWSSVPKLAGLQRCGKSCRLRWINYLR 61 (338)
Q Consensus 13 kg~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCr~RW~n~L~ 61 (338)
...||.+|+++|.+++..|+. ++|..||..+| +|+..+|+.||...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 467999999999999999985 46999999999 8999999999987654
No 70
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=4.6e-06 Score=62.46 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=45.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHhh-CCCCCHHHHHHHHHHH
Q 039070 61 RPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKH-LPGRTDNEVKNFWNSC 110 (338)
Q Consensus 61 ~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~-LpgRT~~qcKnRW~sl 110 (338)
.|.++...||+||-++..+++.+||.+|..|+++ |++||..+|..+|+..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 4678889999999999999999999999999995 8999999999988653
No 71
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.08 E-value=4.8e-06 Score=67.13 Aligned_cols=47 Identities=19% Similarity=0.358 Sum_probs=43.9
Q ss_pred CCCChHHHHHHHHHHHHcCC---CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 67 GSFTEQEERIIIDIHRILGN---RWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 67 g~WT~EEDe~Ll~lv~~~G~---kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
--||.|||+.|+...++-|. .|+.||+.|.+|+.+||++||+.+++-
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 36999999999999999996 799999999999999999999998874
No 72
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.07 E-value=7.3e-07 Score=82.54 Aligned_cols=53 Identities=15% Similarity=0.346 Sum_probs=47.4
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccC
Q 039070 7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR 61 (338)
Q Consensus 7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~ 61 (338)
+......++||.||++++++++.+||. +|..||+.+| +|+..||+.+|.++.+
T Consensus 127 e~~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 127 EVIQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344566789999999999999999995 9999999999 9999999999988764
No 73
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.07 E-value=2.1e-06 Score=65.82 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=41.8
Q ss_pred CCChHHHHHHHHHHHHcCC---CHHHHHhhCCCCCHHHHHHHHHHHhh
Q 039070 68 SFTEQEERIIIDIHRILGN---RWAQIAKHLPGRTDNEVKNFWNSCIK 112 (338)
Q Consensus 68 ~WT~EEDe~Ll~lv~~~G~---kWs~IA~~LpgRT~~qcKnRW~slLk 112 (338)
-||.|||+.|+..+++-|. .|+.||+.| +||++||++||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999997 799999999 9999999999999875
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.84 E-value=2.7e-06 Score=66.07 Aligned_cols=43 Identities=23% Similarity=0.374 Sum_probs=38.6
Q ss_pred CCCCChHHHHHHHHHHHHcCC----CHHHHHhhCCCCCHHHHHHHHH
Q 039070 66 RGSFTEQEERIIIDIHRILGN----RWAQIAKHLPGRTDNEVKNFWN 108 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G~----kWs~IA~~LpgRT~~qcKnRW~ 108 (338)
.+.||.+|+++|.++...|+. +|.+||+.+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999999884
No 75
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.80 E-value=6.2e-05 Score=60.91 Aligned_cols=61 Identities=20% Similarity=0.301 Sum_probs=52.0
Q ss_pred eeecccCCCCCCCCCChHHHHHHHHHHHHcCCCHHHHHhhCC-----CCCHHHHHHHHHHHhhhHHHhCC
Q 039070 55 RWINYLRPDLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLP-----GRTDNEVKNFWNSCIKKKLIARG 119 (338)
Q Consensus 55 RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~Lp-----gRT~~qcKnRW~slLkkkl~~~g 119 (338)
.|..+|. ...||.||...|++|+++|+-+|..|+..+. .||-.++|.||+.+.++.+..++
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 4445554 3689999999999999999999999999873 79999999999999988776653
No 76
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.77 E-value=3.1e-05 Score=74.50 Aligned_cols=99 Identities=18% Similarity=0.252 Sum_probs=79.3
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccc-------eeecc---------------------------
Q 039070 14 GLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRL-------RWINY--------------------------- 59 (338)
Q Consensus 14 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~-------RW~n~--------------------------- 59 (338)
+.||..+...++.++.+||..+|..||..|+ +++...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999999998 788776642 22100
Q ss_pred ----------------cCCCCCCCCCChHHHHHHHHHHHHcCC----CHHHHHh------------hCCCCCHHHHHHHH
Q 039070 60 ----------------LRPDLKRGSFTEQEERIIIDIHRILGN----RWAQIAK------------HLPGRTDNEVKNFW 107 (338)
Q Consensus 60 ----------------L~p~lkkg~WT~EEDe~Ll~lv~~~G~----kWs~IA~------------~LpgRT~~qcKnRW 107 (338)
..+..+...||++||..|+-++.+||- .|..|.. .+..||+.+|..|-
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 012234568999999999999999995 4999963 34779999999999
Q ss_pred HHHhhh
Q 039070 108 NSCIKK 113 (338)
Q Consensus 108 ~slLkk 113 (338)
+++++-
T Consensus 270 ~tLi~~ 275 (304)
T 1ofc_X 270 NTLITL 275 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999974
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.75 E-value=4.1e-06 Score=65.12 Aligned_cols=45 Identities=11% Similarity=0.235 Sum_probs=39.3
Q ss_pred CccCCCHHHHHHHHHHHHHhCCC---CcccccccccccccCccccceee
Q 039070 12 KRGLWSPEEDEKLIKHVTTHGHG---SWSSVPKLAGLQRCGKSCRLRWI 57 (338)
Q Consensus 12 kkg~WT~EEDe~L~~lV~k~G~~---nW~~IAk~lg~~Rt~kQCr~RW~ 57 (338)
..+.||.+|+++|.++++.|+.+ .|.+||..+| ||+..+|+.+|.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 35689999999999999999864 6999999999 999999999985
No 78
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.58 E-value=0.00011 Score=59.24 Aligned_cols=45 Identities=18% Similarity=0.179 Sum_probs=41.8
Q ss_pred CCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 039070 66 RGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSC 110 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~sl 110 (338)
...||+||.++..++...||.+|..||..|++||..+|-.+|+..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 468999999999999999999999999999999999999988653
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.57 E-value=0.00015 Score=55.35 Aligned_cols=44 Identities=11% Similarity=0.280 Sum_probs=41.0
Q ss_pred CCCCChHHHHHHHHHHHHcCCCHHHHHh-hCCCCCHHHHHHHHHH
Q 039070 66 RGSFTEQEERIIIDIHRILGNRWAQIAK-HLPGRTDNEVKNFWNS 109 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G~kWs~IA~-~LpgRT~~qcKnRW~s 109 (338)
...||+||-++..+++.+||.+|..|++ .|++||..+|..+|+.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4689999999999999999999999999 5899999999999874
No 80
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=5.4e-05 Score=56.58 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=44.6
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccc-cccccccCccccceeec
Q 039070 7 SKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWIN 58 (338)
Q Consensus 7 ~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk-~lg~~Rt~kQCr~RW~n 58 (338)
..|.++...||+||-++..+++.+||. +|..|++ .++ +|+..+|...|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 457888899999999999999999996 9999998 688 9999999887643
No 81
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.08 E-value=0.00053 Score=53.50 Aligned_cols=48 Identities=21% Similarity=0.492 Sum_probs=40.5
Q ss_pred CCCCChHHHHHHHHHHHHcC----------CCHHHHHhhCC----CCCHHHHHHHHHHHhhh
Q 039070 66 RGSFTEQEERIIIDIHRILG----------NRWAQIAKHLP----GRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G----------~kWs~IA~~Lp----gRT~~qcKnRW~slLkk 113 (338)
...||.+|-..||++...+. ..|..||..|. .||+.||+.+|.++.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999997642 14999999872 79999999999987765
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.06 E-value=0.00013 Score=73.90 Aligned_cols=49 Identities=14% Similarity=0.365 Sum_probs=44.1
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeeccc
Q 039070 10 KVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60 (338)
Q Consensus 10 ~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L 60 (338)
.....+||.||-+++++++.+||. +|..||+.+| +|+..||+..|.++-
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 345789999999999999999995 9999999999 999999999987653
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.94 E-value=0.00015 Score=58.68 Aligned_cols=49 Identities=10% Similarity=0.213 Sum_probs=42.0
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCccccccccc----ccccCccccceeeccc
Q 039070 11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAG----LQRCGKSCRLRWINYL 60 (338)
Q Consensus 11 lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg----~~Rt~kQCr~RW~n~L 60 (338)
++..+||.||++.|++++++|+. .|..|+.... .+|+..++++||..+.
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 45589999999999999999995 9999999872 2699999999987643
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.50 E-value=0.00059 Score=54.87 Aligned_cols=43 Identities=16% Similarity=0.423 Sum_probs=39.5
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceee
Q 039070 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWI 57 (338)
Q Consensus 13 kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~ 57 (338)
...||+||.++..+++..||. +|..||+.++ +|+..+|.+.|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHh
Confidence 468999999999999999994 9999999999 999999988764
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.47 E-value=0.001 Score=50.62 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=40.6
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCcccccc-cccccccCccccceeec
Q 039070 11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPK-LAGLQRCGKSCRLRWIN 58 (338)
Q Consensus 11 lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk-~lg~~Rt~kQCr~RW~n 58 (338)
-....||+||-++..+++.+||. +|..|++ .++ +|+..+|...|..
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 45568999999999999999996 9999999 698 9999999886653
No 86
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.29 E-value=0.0058 Score=60.20 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=75.8
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccc-------eeecc---------------------------
Q 039070 14 GLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRL-------RWINY--------------------------- 59 (338)
Q Consensus 14 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~-------RW~n~--------------------------- 59 (338)
+.||.-+=..++.++.+||..+-..||..|+.+++...++. ||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999889999998853455554441 22110
Q ss_pred -------------c---CCCC--CCCCCChHHHHHHHHHHHHcCC----CHHHHHhh------------CCCCCHHHHHH
Q 039070 60 -------------L---RPDL--KRGSFTEQEERIIIDIHRILGN----RWAQIAKH------------LPGRTDNEVKN 105 (338)
Q Consensus 60 -------------L---~p~l--kkg~WT~EEDe~Ll~lv~~~G~----kWs~IA~~------------LpgRT~~qcKn 105 (338)
| .+.. +...||++||..|+-++.+||- .|..|-.. +..||+.+|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 0111 3457999999999999999994 59999442 46799999999
Q ss_pred HHHHHhhhH
Q 039070 106 FWNSCIKKK 114 (338)
Q Consensus 106 RW~slLkkk 114 (338)
|-+++++-.
T Consensus 284 Rc~tLi~~I 292 (374)
T 2y9y_A 284 RGNTLLQCL 292 (374)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999753
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.23 E-value=0.00029 Score=55.02 Aligned_cols=50 Identities=22% Similarity=0.481 Sum_probs=39.7
Q ss_pred CCccCCCHHHHHHHHHHHHHhCC---------CCcccccccc---cccccCccccceeeccc
Q 039070 11 VKRGLWSPEEDEKLIKHVTTHGH---------GSWSSVPKLA---GLQRCGKSCRLRWINYL 60 (338)
Q Consensus 11 lkkg~WT~EEDe~L~~lV~k~G~---------~nW~~IAk~l---g~~Rt~kQCr~RW~n~L 60 (338)
.+...||.+|...|+++...+.. .-|..||..| |..|++.||+.+|.+..
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46788999999999999975321 1499999864 45799999999998753
No 88
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.15 E-value=0.002 Score=51.92 Aligned_cols=48 Identities=19% Similarity=0.350 Sum_probs=41.9
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCC--CCcccccccccccccCccccceeec
Q 039070 10 KVKRGLWSPEEDEKLIKHVTTHGH--GSWSSVPKLAGLQRCGKSCRLRWIN 58 (338)
Q Consensus 10 ~lkkg~WT~EEDe~L~~lV~k~G~--~nW~~IAk~lg~~Rt~kQCr~RW~n 58 (338)
.-+--.||.|||..|+...++.|. ..|..||+.++ +|++.|+.+|++.
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE 79 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence 344457999999999999999985 36999999998 8999999999876
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.03 E-value=0.001 Score=50.93 Aligned_cols=48 Identities=10% Similarity=0.269 Sum_probs=41.1
Q ss_pred CccCCCHHHHHHHHHHHHHhCC--CCcccccccccccccCccccceeecccC
Q 039070 12 KRGLWSPEEDEKLIKHVTTHGH--GSWSSVPKLAGLQRCGKSCRLRWINYLR 61 (338)
Q Consensus 12 kkg~WT~EEDe~L~~lV~k~G~--~nW~~IAk~lg~~Rt~kQCr~RW~n~L~ 61 (338)
.--.||.|||..|+...++.|. ..|..||+.++ |++.|+..|++..++
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKLD--KNPNQVSERFQQLMK 62 (70)
Confidence 3457999999999999999986 36999999884 999999999987543
No 90
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.86 E-value=0.02 Score=50.91 Aligned_cols=38 Identities=26% Similarity=0.482 Sum_probs=32.5
Q ss_pred CCCccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccc
Q 039070 4 NCCSKQKVKRGLWSPEEDEKLIKHVTTHGHGSWSSVPK 41 (338)
Q Consensus 4 ~~c~K~~lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk 41 (338)
|++.++......||.+||..|+..|.+||.|+|..|-.
T Consensus 125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 45566666667799999999999999999999999875
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.82 E-value=0.079 Score=39.93 Aligned_cols=48 Identities=15% Similarity=0.062 Sum_probs=41.1
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCC---HHHHHhhC--CCCCHHHHHHHHHHHh
Q 039070 64 LKRGSFTEQEERIIIDIHRILGNR---WAQIAKHL--PGRTDNEVKNFWNSCI 111 (338)
Q Consensus 64 lkkg~WT~EEDe~Ll~lv~~~G~k---Ws~IA~~L--pgRT~~qcKnRW~slL 111 (338)
..+-.||+|..+..++++.++|.. +..|.+.| +|.|..+|+.|.+.+.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999954 88999986 7899999999986543
No 92
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.26 E-value=0.21 Score=47.91 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=42.5
Q ss_pred CCCCChHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 66 RGSFTEQEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
-+.||..+...++.++.+||. .|..||..|+|+|..+|+.++.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 357999999999999999995 699999999999999998887666654
No 93
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.08 E-value=0.24 Score=43.77 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=42.2
Q ss_pred CCCCCCChHHHHHHHHHHHHcC---CCHHHHHhh--CCCCCHHHHHHHHHHHhhhH
Q 039070 64 LKRGSFTEQEERIIIDIHRILG---NRWAQIAKH--LPGRTDNEVKNFWNSCIKKK 114 (338)
Q Consensus 64 lkkg~WT~EEDe~Ll~lv~~~G---~kWs~IA~~--LpgRT~~qcKnRW~slLkkk 114 (338)
-....||+.|-..|++++.+|| .+|..|++. |.+||..+|+..+..++...
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 3456899999999999999999 579999875 78999999999887766553
No 94
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=91.82 E-value=0.036 Score=44.70 Aligned_cols=48 Identities=10% Similarity=0.227 Sum_probs=38.9
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCccccccccc----ccccCccccceeecc
Q 039070 11 VKRGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAG----LQRCGKSCRLRWINY 59 (338)
Q Consensus 11 lkkg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg----~~Rt~kQCr~RW~n~ 59 (338)
++...||.||.+.|.+++++|.- .|..|+.... ..|+..+.++||..+
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 44578999999999999999995 9999997543 157777888887654
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.57 E-value=0.085 Score=49.81 Aligned_cols=28 Identities=43% Similarity=0.778 Sum_probs=26.1
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCcccccc
Q 039070 14 GLWSPEEDEKLIKHVTTHGHGSWSSVPK 41 (338)
Q Consensus 14 g~WT~EEDe~L~~lV~k~G~~nW~~IAk 41 (338)
-.|+.+||..|+..|.+||.|+|..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3599999999999999999999999985
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=81.68 E-value=0.41 Score=36.03 Aligned_cols=49 Identities=20% Similarity=0.231 Sum_probs=35.3
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCC--Ccccccccccc-cccCccccceee
Q 039070 9 QKVKRGLWSPEEDEKLIKHVTTHGHG--SWSSVPKLAGL-QRCGKSCRLRWI 57 (338)
Q Consensus 9 ~~lkkg~WT~EEDe~L~~lV~k~G~~--nW~~IAk~lg~-~Rt~kQCr~RW~ 57 (338)
.+..+-.||+|.-++.+++|+..|.. .+..|.+.|+. +.+..++.-|.+
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ 54 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence 45677789999999999999999942 26677776662 455555554443
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=77.30 E-value=5.6 Score=37.37 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=42.4
Q ss_pred CCCCChHHHHHHHHHHHHcC---CCHHHHHhh--CCCCCHHHHHHHHHHHhhh
Q 039070 66 RGSFTEQEERIIIDIHRILG---NRWAQIAKH--LPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G---~kWs~IA~~--LpgRT~~qcKnRW~slLkk 113 (338)
++.||+.|-..|++.+.+|| .+|..|+.- |+.|+...++.-++.++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 589999774 7899999999998877754
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=73.08 E-value=6 Score=27.69 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 72 QEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 72 EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+.+..++.++...|-.+.+||..+ |-+...|+.+....+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455666777778899999999999 88999999988776654
No 99
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=69.83 E-value=7.7 Score=27.99 Aligned_cols=42 Identities=12% Similarity=0.334 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHH----cCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 71 EQEERIIIDIHRI----LGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 71 ~EEDe~Ll~lv~~----~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
++.+..++.+..- .|-.+.+||..+ |-|...|+.+....+++
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3445556666654 678899999999 99999999988776654
No 100
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=66.07 E-value=7.9 Score=27.53 Aligned_cols=41 Identities=10% Similarity=0.212 Sum_probs=31.7
Q ss_pred HHHHHHHHHHH----HcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 72 QEERIIIDIHR----ILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 72 EEDe~Ll~lv~----~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+.+..++.+.. ..|-.+.+||+.+ |-|...|+.+....+++
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44555555555 3578899999999 99999999998877654
No 101
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=60.88 E-value=30 Score=28.52 Aligned_cols=76 Identities=16% Similarity=0.368 Sum_probs=50.7
Q ss_pred CccCCCHHHH--HHHHHHHHHhCCCCcccccccccccccCccccceeecccCCCCCCCCCChHHHHHHHHHHHHcC----
Q 039070 12 KRGLWSPEED--EKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTEQEERIIIDIHRILG---- 85 (338)
Q Consensus 12 kkg~WT~EED--e~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~~~G---- 85 (338)
=+.+|.+.+. +.|.++++..|. ....++.. + +|.- +. -+|..+|.+.|
T Consensus 6 ~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~i-~-gk~l--------DL---------------~~Ly~~V~~~GG~~~ 59 (121)
T 2rq5_A 6 LGRRWGPNVQRLACIKKHLRSQGI-TMDELPLI-G-GCEL--------DL---------------ACFFRLINEMGGMQQ 59 (121)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCEE-T-TEEC--------CH---------------HHHHHHHHHTTSHHH
T ss_pred hhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCcC-C-CEec--------cH---------------HHHHHHHHHcCcHHH
Confidence 3567988775 568888888886 55555543 2 2221 11 23778888888
Q ss_pred ----CCHHHHHhhC--CCC---CHHHHHHHHHHHhhh
Q 039070 86 ----NRWAQIAKHL--PGR---TDNEVKNFWNSCIKK 113 (338)
Q Consensus 86 ----~kWs~IA~~L--pgR---T~~qcKnRW~slLkk 113 (338)
+.|..||..| +.- ....+|.+|..+|-.
T Consensus 60 Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 60 VTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred hcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 4699999998 322 256789999888754
No 102
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=58.11 E-value=16 Score=27.52 Aligned_cols=41 Identities=29% Similarity=0.329 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 72 QEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 72 EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+.++.++.++...|-.-..||+.| |-+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455566777777788899999999 89999999988776644
No 103
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=57.14 E-value=1.7 Score=36.14 Aligned_cols=57 Identities=12% Similarity=0.243 Sum_probs=42.5
Q ss_pred HHHHHHHHhCC-------CCcccccccccccccC----ccccceeecccCCCCCCCCCChHHHHHHHHHHH
Q 039070 23 KLIKHVTTHGH-------GSWSSVPKLAGLQRCG----KSCRLRWINYLRPDLKRGSFTEQEERIIIDIHR 82 (338)
Q Consensus 23 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt~----kQCr~RW~n~L~p~lkkg~WT~EEDe~Ll~lv~ 82 (338)
+|..+|.+.|. +.|.+||..+|...+. ...+..|.++|.|-- ..+++|-..|.+-+.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 67888888883 3699999999864433 356778888887632 488899988887664
No 104
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=55.72 E-value=9.6 Score=30.92 Aligned_cols=38 Identities=11% Similarity=0.306 Sum_probs=30.3
Q ss_pred HHHHHHHHcC--------CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 76 IIIDIHRILG--------NRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 76 ~Ll~lv~~~G--------~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+|..+|.+.| +.|..||..|.--.+..+|.+|..+|-.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 3888888888 3699999998444478999999988854
No 105
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=52.90 E-value=22 Score=28.07 Aligned_cols=38 Identities=16% Similarity=0.372 Sum_probs=28.5
Q ss_pred HHHHHHHHcC--------CCHHHHHhhCCCCC----HHHHHHHHHHHhhh
Q 039070 76 IIIDIHRILG--------NRWAQIAKHLPGRT----DNEVKNFWNSCIKK 113 (338)
Q Consensus 76 ~Ll~lv~~~G--------~kWs~IA~~LpgRT----~~qcKnRW~slLkk 113 (338)
+|..+|.+.| +.|..||..|.--. ...+|..|..+|-.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 3777777787 37999999993322 56889999888765
No 106
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=51.51 E-value=20 Score=29.05 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=28.9
Q ss_pred HHHHHHHHcC--------CCHHHHHhhCCCCC----HHHHHHHHHHHhhh
Q 039070 76 IIIDIHRILG--------NRWAQIAKHLPGRT----DNEVKNFWNSCIKK 113 (338)
Q Consensus 76 ~Ll~lv~~~G--------~kWs~IA~~LpgRT----~~qcKnRW~slLkk 113 (338)
+|..+|.+.| +.|..||..|.--. ...+|.+|..+|-.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 3777888888 36999999983322 56889999888865
No 107
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=50.23 E-value=26 Score=34.45 Aligned_cols=47 Identities=23% Similarity=0.322 Sum_probs=39.4
Q ss_pred CCCCChHHHHHHHHHHHHcCCC-HHHHHhhCC-CCCHHHHHHHHHHHhh
Q 039070 66 RGSFTEQEERIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNSCIK 112 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G~k-Ws~IA~~Lp-gRT~~qcKnRW~slLk 112 (338)
.+.||..+=..++.+..+||.. -..||..|. |+|..+|+.+.....+
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~ 171 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWS 171 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 3579999999999999999954 999999997 9999999966554443
No 108
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=49.23 E-value=28 Score=26.01 Aligned_cols=41 Identities=7% Similarity=0.190 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHH----cCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 72 QEERIIIDIHRI----LGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 72 EEDe~Ll~lv~~----~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+.+..++.+..- .|-.+..||..+ |-|...|+.+-...+++
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 445556666554 577899999999 99999999988776654
No 109
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=48.62 E-value=29 Score=28.53 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=25.6
Q ss_pred HHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 82 RILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 82 ~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
...|-...+||+.+ |-+...|+.+....+++
T Consensus 153 ~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 153 ELDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp HTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34477899999999 89999999998776654
No 110
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=47.89 E-value=37 Score=24.18 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 69 FTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 69 WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
.|+.|-+. +.++ ..|-.-.+||..+ |-+...|+.+....+++
T Consensus 17 L~~~e~~v-l~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQV-LSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHH-HHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45555444 4554 6788899999999 88999999988776654
No 111
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=47.48 E-value=27 Score=28.62 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=29.4
Q ss_pred HHHHHHHHcC--------CCHHHHHhhCCCCC----HHHHHHHHHHHhhhH
Q 039070 76 IIIDIHRILG--------NRWAQIAKHLPGRT----DNEVKNFWNSCIKKK 114 (338)
Q Consensus 76 ~Ll~lv~~~G--------~kWs~IA~~LpgRT----~~qcKnRW~slLkkk 114 (338)
+|..+|.++| +.|.+||..|.--+ ...+|..|..+|-.-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 3777788887 37999999983322 568899999988763
No 112
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.29 E-value=26 Score=28.61 Aligned_cols=38 Identities=11% Similarity=0.317 Sum_probs=28.6
Q ss_pred HHHHHHHHcC--------CCHHHHHhhCCCC--C--HHHHHHHHHHHhhh
Q 039070 76 IIIDIHRILG--------NRWAQIAKHLPGR--T--DNEVKNFWNSCIKK 113 (338)
Q Consensus 76 ~Ll~lv~~~G--------~kWs~IA~~LpgR--T--~~qcKnRW~slLkk 113 (338)
+|..+|.+.| +.|..||..|.-. + +..+|.+|..+|-.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 3777788887 3699999998322 2 46889999888865
No 113
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=45.36 E-value=2.9 Score=34.08 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=29.4
Q ss_pred HHHHHHHHhCC-------CCcccccccccccccCccccceeecccCC
Q 039070 23 KLIKHVTTHGH-------GSWSSVPKLAGLQRCGKSCRLRWINYLRP 62 (338)
Q Consensus 23 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt~kQCr~RW~n~L~p 62 (338)
+|..+|.+.|. +.|.+||..+|... +...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 57777777773 36999999998544 67778888887764
No 114
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=45.11 E-value=46 Score=25.36 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=35.4
Q ss_pred CCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 66 RGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
....|+.|-+.|.-+. .|..-.+||..| |-+...|+.+...+++|
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4467888777665544 788899999999 89999999999887765
No 115
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=44.23 E-value=18 Score=29.86 Aligned_cols=38 Identities=11% Similarity=0.291 Sum_probs=30.4
Q ss_pred HHHHHHHcCC--------CHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 039070 77 IIDIHRILGN--------RWAQIAKHLPGRTDNEVKNFWNSCIKKK 114 (338)
Q Consensus 77 Ll~lv~~~G~--------kWs~IA~~LpgRT~~qcKnRW~slLkkk 114 (338)
|..+|.+.|. .|..||..|.--.+..+|..|..+|-.-
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 7777777773 5999999984444899999999998764
No 116
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=43.38 E-value=39 Score=25.67 Aligned_cols=43 Identities=26% Similarity=0.245 Sum_probs=33.9
Q ss_pred CCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 68 SFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 68 ~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..|+.|-+.|.- + ..|-.-.+||+.| |-+...|+.+....+++
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467766665554 4 7788899999999 88999999998776654
No 117
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=42.17 E-value=23 Score=29.49 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHHh
Q 039070 72 QEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSCIKKKLIA 117 (338)
Q Consensus 72 EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~slLkkkl~~ 117 (338)
+-|.+|+++.++.|. .|..||+.+ |=|...|+.|++.+.+..+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 567888888888774 599999999 999999999998877665443
No 118
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=41.79 E-value=42 Score=23.39 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=34.0
Q ss_pred CCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 67 GSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 67 g~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
...|+.|-+.|.- + ..|..-.+||+.+ |-+...|+.+...++++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4577777766555 4 6677899999999 88999999988776654
No 119
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=41.77 E-value=39 Score=24.96 Aligned_cols=43 Identities=28% Similarity=0.244 Sum_probs=33.5
Q ss_pred CCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 68 SFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 68 ~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..|+.|-+.|.- + ..|-.-.+||+.| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467766655544 4 6788899999999 89999999988776654
No 120
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=41.57 E-value=48 Score=26.25 Aligned_cols=41 Identities=10% Similarity=0.106 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 72 QEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 72 EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+.+..++.++...|-....||+.+ |-+...|+.+....+++
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345566777777888999999999 89999999887766543
No 121
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=40.29 E-value=5 Score=32.06 Aligned_cols=40 Identities=13% Similarity=0.261 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc----CccccceeecccCC
Q 039070 23 KLIKHVTTHGH-------GSWSSVPKLAGLQRC----GKSCRLRWINYLRP 62 (338)
Q Consensus 23 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt----~kQCr~RW~n~L~p 62 (338)
+|..+|.+.|. +.|.+||..+|...+ +.+.+..|.++|.|
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777763 369999999885432 35677788888875
No 122
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=39.39 E-value=42 Score=27.45 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=29.4
Q ss_pred HHHHHHHHcC--------CCHHHHHhhC--CCC---CHHHHHHHHHHHhhh
Q 039070 76 IIIDIHRILG--------NRWAQIAKHL--PGR---TDNEVKNFWNSCIKK 113 (338)
Q Consensus 76 ~Ll~lv~~~G--------~kWs~IA~~L--pgR---T~~qcKnRW~slLkk 113 (338)
+|..+|.+.| +.|..||..| +.. ....+|..|..+|-.
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4777888888 4799999998 222 257889999998876
No 123
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=39.32 E-value=40 Score=26.52 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=24.7
Q ss_pred HcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 83 ILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 83 ~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..|-....||+.| |-|...|+.+....+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4567899999999 89999999988776644
No 124
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=38.98 E-value=18 Score=31.87 Aligned_cols=24 Identities=38% Similarity=0.717 Sum_probs=19.3
Q ss_pred CCCCccCCCHHHHHHHH--------HHHHHhC
Q 039070 9 QKVKRGLWSPEEDEKLI--------KHVTTHG 32 (338)
Q Consensus 9 ~~lkkg~WT~EEDe~L~--------~lV~k~G 32 (338)
|.-.+|-||+|+|+.|. ++++|||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 34578999999999875 5778887
No 125
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=38.87 E-value=1e+02 Score=24.95 Aligned_cols=91 Identities=10% Similarity=0.012 Sum_probs=54.9
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecc------cCCCCC----CCCCChHHHHHHHHHHH
Q 039070 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY------LRPDLK----RGSFTEQEERIIIDIHR 82 (338)
Q Consensus 13 kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~------L~p~lk----kg~WT~EEDe~Ll~lv~ 82 (338)
..+.|.++-..++.++. .| ....+||+.+| .+... ..||.+. +.+... ....++++.+.|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lg--is~~T-V~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QG-VRPCDISRQLR--VSHGC-VSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HT-CCHHHHHHHHT--CCSHH-HHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHH-HHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34688998888888884 56 37899999987 33333 3334332 222211 23578888888888887
Q ss_pred HcC-CCHHHHHhhC---------CCCCHHHHHHHHH
Q 039070 83 ILG-NRWAQIAKHL---------PGRTDNEVKNFWN 108 (338)
Q Consensus 83 ~~G-~kWs~IA~~L---------pgRT~~qcKnRW~ 108 (338)
+.. -.-.+|+..+ ..-+...|....+
T Consensus 98 ~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~ 133 (159)
T 2k27_A 98 QNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIR 133 (159)
T ss_dssp HCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred HCccchHHHHHHHHHHhcccccCCccCHHHHHHHHH
Confidence 654 2234565554 1346666665443
No 126
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=38.65 E-value=51 Score=22.27 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 74 ERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 74 De~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+..++.+ ...|-.-.+||..| |-+...|+.+...++++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4455566 46687789999999 88999999998876654
No 127
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=38.63 E-value=18 Score=28.04 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=27.0
Q ss_pred HHHHHHHHcC--------CCHHHHHhhCCCC----CHHHHHHHHHHHhhh
Q 039070 76 IIIDIHRILG--------NRWAQIAKHLPGR----TDNEVKNFWNSCIKK 113 (338)
Q Consensus 76 ~Ll~lv~~~G--------~kWs~IA~~LpgR----T~~qcKnRW~slLkk 113 (338)
+|..+|.+.| +.|.+||+.|.-- ....+|..|..+|-.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 3777777777 4699999998221 256788888777654
No 128
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=38.46 E-value=49 Score=27.87 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 73 EERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 73 EDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
.+..++.++...|-...+||+.| |-|...|+.+....+++
T Consensus 191 ~~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 191 REKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 33444445555678899999999 99999999988766544
No 129
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=38.22 E-value=47 Score=26.33 Aligned_cols=35 Identities=31% Similarity=0.473 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHH
Q 039070 70 TEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKN 105 (338)
Q Consensus 70 T~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKn 105 (338)
++.-+..|..+....|..|..+|++| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56667788888999999999999999 766665543
No 130
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=37.87 E-value=64 Score=25.82 Aligned_cols=78 Identities=9% Similarity=0.029 Sum_probs=48.5
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecc------cCCCCC----CCCCChHHHHHHHHHHH
Q 039070 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY------LRPDLK----RGSFTEQEERIIIDIHR 82 (338)
Q Consensus 13 kg~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~------L~p~lk----kg~WT~EEDe~Ll~lv~ 82 (338)
..+.|.++-..++.++. .| ....+||+.+| .+... ..||.+. +.+... ....++++.+.|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G-~s~~~iA~~lg--is~~T-V~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QG-VRPCDISRQLR--VSHGC-VSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHH-HHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHH-HHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 35789999888888884 45 37899999988 33322 3334332 222222 23478888888888887
Q ss_pred HcCC-CHHHHHhhC
Q 039070 83 ILGN-RWAQIAKHL 95 (338)
Q Consensus 83 ~~G~-kWs~IA~~L 95 (338)
+.+. .-.+|+..+
T Consensus 105 ~~~~~s~~~i~~~l 118 (149)
T 1k78_A 105 QNPTMFAWEIRDRL 118 (149)
T ss_dssp HCTTCCHHHHHHHH
T ss_pred hCcchhHHHHHHHH
Confidence 6542 234555554
No 131
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=37.74 E-value=1.2e+02 Score=23.52 Aligned_cols=88 Identities=14% Similarity=0.080 Sum_probs=53.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCcccccccccccccCccccceeecccC------CCCCCCCCChHHHHHHHHHHHHcCCC
Q 039070 14 GLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR------PDLKRGSFTEQEERIIIDIHRILGNR 87 (338)
Q Consensus 14 g~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~L~------p~lkkg~WT~EEDe~Ll~lv~~~G~k 87 (338)
...|.++-..++.++. .| .+-.+||+.+| .+...+ .||.+... ........|++++..|+.+...-+-.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G-~s~~~ia~~lg--is~~Tv-~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LN-VSLHEMSRKIS--RSRHCI-RVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHH-HHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred ccCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHH-HHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 4678888888887773 45 37899999988 333333 23332211 11122357888888888873322234
Q ss_pred HHHHHhhCCC--CCHHHHHHHH
Q 039070 88 WAQIAKHLPG--RTDNEVKNFW 107 (338)
Q Consensus 88 Ws~IA~~Lpg--RT~~qcKnRW 107 (338)
=.+|+..+ | -+...|....
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHHHH
Confidence 57888888 4 5666665433
No 132
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=36.93 E-value=46 Score=27.99 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=29.6
Q ss_pred HHHHHHHHcC--------CCHHHHHhhC--CCC---CHHHHHHHHHHHhhhH
Q 039070 76 IIIDIHRILG--------NRWAQIAKHL--PGR---TDNEVKNFWNSCIKKK 114 (338)
Q Consensus 76 ~Ll~lv~~~G--------~kWs~IA~~L--pgR---T~~qcKnRW~slLkkk 114 (338)
+|..+|.+.| +.|.+||..| +.. ....+|..|..+|-.-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 3777888888 3699999998 222 2578999999888763
No 133
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=35.45 E-value=4.2 Score=33.18 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=27.4
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc---CccccceeecccCC
Q 039070 23 KLIKHVTTHGH-------GSWSSVPKLAGLQRC---GKSCRLRWINYLRP 62 (338)
Q Consensus 23 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt---~kQCr~RW~n~L~p 62 (338)
+|..+|.+.|. +.|.+|+..+|...+ +.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57778888873 369999999985432 33456667766653
No 134
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=34.82 E-value=20 Score=29.39 Aligned_cols=30 Identities=10% Similarity=0.062 Sum_probs=24.7
Q ss_pred HcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 83 ILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 83 ~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..|-...+||+.+ |-+...|+++....+++
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4467789999999 88999999998877654
No 135
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=33.93 E-value=29 Score=27.50 Aligned_cols=38 Identities=16% Similarity=0.324 Sum_probs=28.4
Q ss_pred HHHHHHHHcC--------CCHHHHHhhCC--CC---CHHHHHHHHHHHhhh
Q 039070 76 IIIDIHRILG--------NRWAQIAKHLP--GR---TDNEVKNFWNSCIKK 113 (338)
Q Consensus 76 ~Ll~lv~~~G--------~kWs~IA~~Lp--gR---T~~qcKnRW~slLkk 113 (338)
+|..+|.+.| +.|.+||..|. .. ....+|..|..+|-.
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 3777788887 47999999983 21 246789999888865
No 136
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=32.49 E-value=4.8 Score=33.30 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=27.7
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc----CccccceeecccCC
Q 039070 23 KLIKHVTTHGH-------GSWSSVPKLAGLQRC----GKSCRLRWINYLRP 62 (338)
Q Consensus 23 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt----~kQCr~RW~n~L~p 62 (338)
+|..+|.+.|. +.|.+|+..+|...+ +.+.+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777773 369999999985443 23556777777754
No 137
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=32.31 E-value=9.7 Score=32.22 Aligned_cols=57 Identities=30% Similarity=0.391 Sum_probs=35.5
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc----CccccceeecccCC--CCCCCCCChHHHHHHHH
Q 039070 23 KLIKHVTTHGH-------GSWSSVPKLAGLQRC----GKSCRLRWINYLRP--DLKRGSFTEQEERIIID 79 (338)
Q Consensus 23 ~L~~lV~k~G~-------~nW~~IAk~lg~~Rt----~kQCr~RW~n~L~p--~lkkg~WT~EEDe~Ll~ 79 (338)
+|..+|.+.|. ..|.+|+..+|...+ +.+.+..|.++|.| ...+|.=+++|-+.-++
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~~~~ 137 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAID 137 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 46667777763 369999999985432 34567788888876 23345544555444333
No 138
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=32.12 E-value=50 Score=26.62 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCCHHHHHhhCCCCCHHHHH
Q 039070 74 ERIIIDIHRILGNRWAQIAKHLPGRTDNEVK 104 (338)
Q Consensus 74 De~Ll~lv~~~G~kWs~IA~~LpgRT~~qcK 104 (338)
+..|..+....|..|..+|+.| |=+..+|.
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~ 42 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQ 42 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHH
Confidence 4567888899999999999999 66666553
No 139
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=31.80 E-value=47 Score=24.81 Aligned_cols=43 Identities=26% Similarity=0.188 Sum_probs=33.4
Q ss_pred CCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 68 SFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 68 ~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..|+.|-+.|.- + ..|-.-.+||+.| |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILLL-I-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHHH-H-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466666665544 4 6788889999999 89999999998776654
No 140
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=31.12 E-value=58 Score=27.53 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHH
Q 039070 71 EQEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSCIKKKLI 116 (338)
Q Consensus 71 ~EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~slLkkkl~ 116 (338)
.+-|.+|+.+..+.|. .++.||+.+ |-+...|+.|.+.+.+..+.
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 4566778888888774 699999999 88999999999877655443
No 141
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=30.60 E-value=84 Score=24.95 Aligned_cols=43 Identities=19% Similarity=0.160 Sum_probs=33.5
Q ss_pred CChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 69 FTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 69 WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
+++ .+..++.++...|-.-..||+.+ |-|...|+.+....+++
T Consensus 23 L~~-~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 23 LTD-KQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp SCH-HHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 444 44566677777898999999999 99999999988776643
No 142
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=29.65 E-value=66 Score=26.06 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=21.1
Q ss_pred HHHHHHHHcCCCHHHHHhhCCCCCHHHH
Q 039070 76 IIIDIHRILGNRWAQIAKHLPGRTDNEV 103 (338)
Q Consensus 76 ~Ll~lv~~~G~kWs~IA~~LpgRT~~qc 103 (338)
.|..++...|..|..+|+.| |=+..+|
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dI 52 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 46667888999999999998 5555544
No 143
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=29.02 E-value=1.1e+02 Score=24.49 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhHHH
Q 039070 72 QEERIIIDIHRILG-NRWAQIAKHLPGRTDNEVKNFWNSCIKKKLI 116 (338)
Q Consensus 72 EEDe~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~slLkkkl~ 116 (338)
+-|.+|+.+....| -.++.||+.+ |=+...|+.+.+.+.+..+.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 45667788877777 4699999999 88999999999887765443
No 144
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=28.36 E-value=77 Score=25.64 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHH
Q 039070 72 QEERIIIDIHRILGN-RWAQIAKHLPGRTDNEVKNFWNSCIKKKLI 116 (338)
Q Consensus 72 EEDe~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~slLkkkl~ 116 (338)
+-|.+|+.+....|. .++.||+.+ |-+...|..|.+.+.+..+.
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 51 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 446677888777774 699999999 88999999999887766544
No 145
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=27.69 E-value=1.2e+02 Score=23.52 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=35.4
Q ss_pred CCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 66 RGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
....|+.|-+.|.- + ..|-.-.+||+.| |-+...|+.+...++++
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45678888776644 3 3688889999999 88999999998877655
No 146
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=27.60 E-value=42 Score=29.50 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=18.4
Q ss_pred ccceeecccC-CCCCCCCCChHHHHHHH
Q 039070 52 CRLRWINYLR-PDLKRGSFTEQEERIII 78 (338)
Q Consensus 52 Cr~RW~n~L~-p~lkkg~WT~EEDe~Ll 78 (338)
.-+.|..-.. |.-..|-||+|+|+.|.
T Consensus 99 VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 99 FLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 3334443333 56778999999999876
No 147
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=27.57 E-value=63 Score=26.12 Aligned_cols=37 Identities=19% Similarity=0.440 Sum_probs=25.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHH
Q 039070 63 DLKRGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEV 103 (338)
Q Consensus 63 ~lkkg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qc 103 (338)
.+....=|.+ .|..+....|..|..+|+.| |=+..+|
T Consensus 16 ~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dI 52 (114)
T 2of5_A 16 HILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (114)
T ss_dssp CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHH
T ss_pred hhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 3334444544 46666888999999999998 6555544
No 148
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=23.50 E-value=1.3e+02 Score=21.00 Aligned_cols=29 Identities=17% Similarity=0.105 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHhhCCCCCHH
Q 039070 72 QEERIIIDIHRILGNRWAQIAKHLPGRTDN 101 (338)
Q Consensus 72 EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~ 101 (338)
-|.+.|.++...+|.++++.|+.| |=+..
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~ 47 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLS 47 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHH
Confidence 477788899999999999999998 44443
No 149
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.01 E-value=1.4e+02 Score=18.28 Aligned_cols=38 Identities=8% Similarity=0.310 Sum_probs=28.2
Q ss_pred CCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHH
Q 039070 68 SFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFW 107 (338)
Q Consensus 68 ~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW 107 (338)
..++++-..++.++ .-|....+||+.+ |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45677766777665 4577899999999 88888877643
No 150
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=22.92 E-value=87 Score=24.73 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHH
Q 039070 74 ERIIIDIHRILGNRWAQIAKHLPGRTDNEVKN 105 (338)
Q Consensus 74 De~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKn 105 (338)
+..|..+....|..|..+|++| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4456677788899999999999 666665533
No 151
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.68 E-value=11 Score=31.59 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCCcccccccccccccCccccceeecc
Q 039070 19 EEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59 (338)
Q Consensus 19 EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCr~RW~n~ 59 (338)
+-|.+|++++++.|.-.|.+||+.+| -+...|+.|..+.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L 41 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKM 41 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHH
Confidence 45889999999998889999999998 5666677665543
No 152
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=22.65 E-value=2.1e+02 Score=22.60 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=31.1
Q ss_pred CCCCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHH
Q 039070 66 RGSFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKN 105 (338)
Q Consensus 66 kg~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKn 105 (338)
....|.++-..++.++. -|..-.+||+.+ |.+...|..
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~s~~~iA~~l-gis~~TV~r 67 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGVRPCDISRQL-RVSHGCVSK 67 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHH
Confidence 34789999999998885 688889999999 788877765
No 153
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=22.38 E-value=35 Score=26.01 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccc
Q 039070 19 EEDEKLIKHVTTHGHGSWSSVPKLAGLQRC 48 (338)
Q Consensus 19 EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt 48 (338)
-|.+.|.+++++++ |+..+.|+.+|..|+
T Consensus 51 ~E~~~i~~aL~~~~-gn~~~aA~~LGIsr~ 79 (91)
T 1ntc_A 51 LERTLLTTALRHTQ-GHKQEAARLLGWGAA 79 (91)
T ss_dssp HHHHHHHHHHHHTT-TCTTHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHCcCHH
Confidence 46778888888888 699999999996554
No 154
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=21.79 E-value=1.4e+02 Score=22.47 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHH
Q 039070 71 EQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNF 106 (338)
Q Consensus 71 ~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnR 106 (338)
.-|.+.|.++...+|.+.++.|+.| |=+...+..|
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3477788899999999999999998 6666555443
No 155
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.50 E-value=1.3e+02 Score=26.60 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=32.8
Q ss_pred CCChHHHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 039070 68 SFTEQEERIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKK 113 (338)
Q Consensus 68 ~WT~EEDe~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~slLkk 113 (338)
..++.|-+ ++.++ ..|-.-.+||+.| |.+...||.|-...+++
T Consensus 197 ~L~~~ere-vl~L~-~~G~s~~EIA~~L-~iS~~TVk~~l~ra~~k 239 (258)
T 3clo_A 197 ILSEREKE-ILRCI-RKGLSSKEIAATL-YISVNTVNRHRQNILEK 239 (258)
T ss_dssp SSCHHHHH-HHHHH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45554444 45555 5788899999999 99999999998876654
Done!