BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039074
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GKE|A Chain A, Crystal Structure Of Dicamba Monooxygenase
pdb|3GKE|B Chain B, Crystal Structure Of Dicamba Monooxygenase
pdb|3GKE|C Chain C, Crystal Structure Of Dicamba Monooxygenase
pdb|3GB4|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dicamba
pdb|3GB4|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dicamba
pdb|3GB4|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dicamba
pdb|3GOB|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dcsa
pdb|3GOB|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dcsa
pdb|3GOB|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dcsa
pdb|3GTE|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron
pdb|3GTE|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron
pdb|3GTE|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron
pdb|3GTS|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron And Dicamba
pdb|3GTS|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron And Dicamba
pdb|3GTS|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron And Dicamba
pdb|3GL0|A Chain A, Crystal Structure Of Dicamba Monooxygenase Bound To 3,6
Dichlorosalicylic Acid (Dcsa)
pdb|3GL0|B Chain B, Crystal Structure Of Dicamba Monooxygenase Bound To 3,6
Dichlorosalicylic Acid (Dcsa)
pdb|3GL0|C Chain C, Crystal Structure Of Dicamba Monooxygenase Bound To 3,6
Dichlorosalicylic Acid (Dcsa)
pdb|3GL2|A Chain A, Crystal Structure Of Dicamba Monooxygenase Bound To
Dicamba
pdb|3GL2|B Chain B, Crystal Structure Of Dicamba Monooxygenase Bound To
Dicamba
pdb|3GL2|C Chain C, Crystal Structure Of Dicamba Monooxygenase Bound To
Dicamba
Length = 349
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 11/182 (6%)
Query: 83 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLE 142
WY L +++ + PLG T+ D + LY+ +G + D CPHR A LS+G L++G L+
Sbjct: 9 WYVAALPEEL-SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQ 67
Query: 143 CLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLP 202
C YHG +F+G G+CV P + P S VR++ V E ++W+W +P +P
Sbjct: 68 CPYHGLEFDGGGQCVHNPH--GNGARPASLNVRSFPVVERDALIWIWPGDPALADPGAIP 125
Query: 203 WFENFARPGFQDVSTIHELPYDHSILLENLMDPAHIPISHDRTDWTAKREDAQPLGFEVT 262
F P ++ V + ++ +L++NLMD H H R +AQ F+
Sbjct: 126 DFGCRVDPAYRTVGGYGHVDCNYKLLVDNLMDLGHAQYVH--------RANAQTDAFDRL 177
Query: 263 ER 264
ER
Sbjct: 178 ER 179
>pdb|1WW9|A Chain A, Crystal Structure Of The Terminal Oxygenase Component Of
Carbazole 1, 9a-dioxygenase, A Non-heme Iron Oxygenase
System Catalyzing The Novel Angular Dioxygenation For
Carbazole And Dioxin
pdb|2DE5|A Chain A, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE5|B Chain B, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE5|C Chain C, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE6|A Chain A, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE6|B Chain B, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE6|C Chain C, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE7|A Chain A, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE7|B Chain B, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE7|C Chain C, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|A Chain A, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|B Chain B, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|C Chain C, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMH|A Chain A, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMH|B Chain B, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMH|C Chain C, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMI|A Chain A, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMI|B Chain B, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMI|C Chain C, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
Length = 392
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 20/205 (9%)
Query: 83 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGR-- 140
WYP+ +K++ + P L + + +++ + +G+L C +DRC HR +LS +
Sbjct: 29 WYPVMFSKEINEGEPKTLKLLGENLLVNRI-DGKLYCLKDRCLHRGVQLSVKVECKTKST 87
Query: 141 LECLYHGWQFEGE-GKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPP--N 197
+ C YH W + E G I P A+I R ++TY V+E++G V++++ PP
Sbjct: 88 ITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQK-LKTYPVQEAKGCVFIYLGDGDPPPLA 146
Query: 198 PDKLPWFENFARPGFQDVSTIHELPYDHSILLENLMDPAHIPISHDRTDWTAKRED-AQP 256
D P NF + + + + + +EN DP+HI I D K D A P
Sbjct: 147 RDTPP---NFLDDDMEILGKNQIIKSNWRLAVENGFDPSHIYIHKDSI--LVKDNDLALP 201
Query: 257 LGF-------EVTERTDRGFAGRWG 274
LGF + T D GR G
Sbjct: 202 LGFAPGGDRKQQTRVVDDDVVGRKG 226
>pdb|2ZYL|A Chain A, Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxylase
(Ksha) From M. Tuberculosis
Length = 386
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 48 SSTSTVGDHKVLVGPASAEERRGERQVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQI 107
+ TS VG ++ G RG W+ L + KD + P G+ F ++
Sbjct: 3 TDTSGVGVREIDAGALPTRYARG------------WHCLGVAKDYLEGKPHGVEAFGTKL 50
Query: 108 VLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAK 167
V++ D +G+L+ C H LSEG + + C +H W++ G+G+C +P +
Sbjct: 51 VVFADSHGDLKVLDGYCRHMGGDLSEGTVKGDEVACPFHDWRWGGDGRCKLVPYA---RR 107
Query: 168 IPRSACVRTYEVKESQGVVWVWMSQK-TPPNP 198
PR A R++ G+++VW + PP+P
Sbjct: 108 TPRMARTRSWTTDVRSGLLFVWHDHEGNPPDP 139
>pdb|3GKQ|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|B Chain B, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|C Chain C, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|D Chain D, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|E Chain E, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|F Chain F, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
Length = 389
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 23/211 (10%)
Query: 62 PASAEERRGERQV----ADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGEL 117
PA ERR A + WYP+ L+ +V + +P+ + + ++++L + +G +
Sbjct: 7 PAGIAERRTRAWAPYIDAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VDGVV 65
Query: 118 RCYQDRCPHRLAKLSEGQ--LIDGRLECLYHGWQFEGE-GKCVKIPQLPADAKIPRSACV 174
DRC HR LS+ + C YHGW + + GK V I P +I R A +
Sbjct: 66 HAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYRWDNGKLVDILTNPTSVQIGRHA-L 124
Query: 175 RTYEVKESQGVVWVWMSQKTPPN-PDKLPWFENFARPGFQDVS-TIHE----LPYDHSIL 228
+TY V+E +G+V++++ + P + + +P PGF D +H + + +
Sbjct: 125 KTYPVREEKGLVFLFVGDQEPHDLAEDVP-------PGFLDADLAVHGQHRVVDANWRMG 177
Query: 229 LENLMDPAHIPISHDRTDWTAKREDAQPLGF 259
+EN D H+ I H + + A PLGF
Sbjct: 178 VENGFDAGHVFI-HKSSILLDGNDIALPLGF 207
>pdb|1Z01|A Chain A, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|B Chain B, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|C Chain C, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|D Chain D, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|E Chain E, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|F Chain F, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|A Chain A, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|B Chain B, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|C Chain C, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|D Chain D, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|E Chain E, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|F Chain F, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|A Chain A, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|B Chain B, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|C Chain C, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|D Chain D, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|E Chain E, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|F Chain F, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
Length = 446
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 87/196 (44%), Gaps = 27/196 (13%)
Query: 75 ADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEG 134
A + + WYP T ++ +D G+ + IVL + NG++ +D+C HR +LSE
Sbjct: 36 AAWGFINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLHRGVRLSEK 94
Query: 135 Q--LIDGRLECLYHGWQFEGE-GKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWM- 190
+ C YHG+ F+ E GK V I P D K+ + V TY V E G+++V++
Sbjct: 95 PTCFTKSTISCWYHGFTFDLETGKLVTIVANPED-KLIGTTGVTTYPVHEVNGMIFVFVR 153
Query: 191 -----SQKTPPNPDKLPW-----FENFARP-------GFQDVSTIHELPY----DHSILL 229
+ PP LP+ E F P D + +H + + I
Sbjct: 154 EDDFPDEDVPPLAHDLPFRFPERSEQFPHPLWPSSPSVLDDNAVVHGMHRTGFGNWRIAC 213
Query: 230 ENLMDPAHIPISHDRT 245
EN D AHI + D T
Sbjct: 214 ENGFDNAHILVHKDNT 229
>pdb|3GCF|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|B Chain B, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|C Chain C, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|D Chain D, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|E Chain E, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|F Chain F, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|G Chain G, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|H Chain H, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|I Chain I, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|J Chain J, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|K Chain K, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|L Chain L, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|M Chain M, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|N Chain N, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|O Chain O, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
Length = 394
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 83 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLI--DGR 140
W+P ++ + + +T+ ++++L + GE++ D C HR S+ L G
Sbjct: 35 WHPAAFDHELAEGEFVAVTMLGEKVLLTR-AKGEVKAIADGCAHRGVPFSKEPLCFKAGT 93
Query: 141 LECLYHGWQFE-GEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTP-PNP 198
+ C YHGW ++ +G+ V + P I + ++ Y V+ +QGVV+V++ + P
Sbjct: 94 VSCWYHGWTYDLDDGRLVDVLTSPGSPVIGKIG-IKVYPVQVAQGVVFVFIGDEEPHALS 152
Query: 199 DKLPWFENFARPGFQDVSTIHELPYDHSIL------LENLMDPAHIPISHDRTDWTAKRE 252
+ LP PGF D T H L ++ +EN D HI H + W +
Sbjct: 153 EDLP-------PGFLDEDT-HLLGIRRTVQSNWRLGVENGFDTTHI-FMHRNSPWVSGNR 203
Query: 253 DAQPLGFEVTER 264
A P GF +R
Sbjct: 204 LAFPYGFVPADR 215
>pdb|3VCA|A Chain A, Quaternary Ammonium Oxidative Demethylation: X-Ray
Crystallographic, Resonance Raman And Uv-Visible
Spectroscopic Analysis Of A Rieske- Type Demethylase
pdb|3VCP|A Chain A, The 2.2 Angstrom Structure Of Stc2 With Proline Bound In
The Active Site
Length = 412
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 14/125 (11%)
Query: 100 LTVFDQQIVLYKDGNGELRCYQDRCPHR---LAKLSEGQLIDGRLECLYHGWQFEGEGKC 156
L V ++V+ + +GE+R + + C HR + K +GQ+ +L C YH W +E +GK
Sbjct: 62 LRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKARQGQV--AKLVCPYHQWTYELDGKL 119
Query: 157 VKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLPWFENFARPGFQDVS 216
+ + D + ++ ++ G++++ +S TPP+ F ARP +
Sbjct: 120 IWANDMGPDFDASKYG-LKPVNLRNLDGLIYICLSD-TPPD---FQTFAQLARPYLE--- 171
Query: 217 TIHEL 221
+H+L
Sbjct: 172 -VHDL 175
>pdb|1NDO|A Chain A, Napthalene 1,2-Dioxygenase
pdb|1NDO|C Chain C, Napthalene 1,2-Dioxygenase
pdb|1NDO|E Chain E, Napthalene 1,2-Dioxygenase
pdb|1EG9|A Chain A, Naphthalene 1,2-Dioxygenase With Indole Bound In The
Active Site.
pdb|1O7M|A Chain A, Naphthalene 1,2-Dioxygenase, Binary Complex With Dioxygen
pdb|1O7N|A Chain A, Naphthalene 1,2-dioxygenase, Ternary Complex With Dioxygen
And Indole
pdb|1O7P|A Chain A, Naphthalene 1,2-Dioxygenase, Product Complex
pdb|1O7W|A Chain A, Naphthalene 1,2-Dioxygenase, Fully Reduced Form
pdb|1O7G|A Chain A, Naphthalene 1,2-Dioxygenase With Naphthalene Bound In The
Active Site.
pdb|1O7H|A Chain A, Naphthalene 1,2-Dioxygenase With Oxidized Rieske Iron
Sulphur Center Site.
pdb|1UUV|A Chain A, Naphthalene 1,2-Dioxygenase With Nitric Oxide And Indole
Bound In The Active Site.
pdb|1UUW|A Chain A, Naphthalene 1,2-dioxygenase With Nitric Oxide Bound In The
Active Site.
pdb|2HMK|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Phenanthrene
pdb|2HMM|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Anthracene
pdb|2HMO|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
3- Nitrotoluene
Length = 449
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 30/180 (16%)
Query: 86 LYLTKD----VPDD---APLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLID 138
L+LT D P D A +G+ ++++ + +G +R + + C HR L + +
Sbjct: 40 LFLTHDSLIPAPGDYVTAKMGI----DEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGN 95
Query: 139 GR-LECLYHGWQFEGEGKCVKIP-QLPADAKIPRSACVRTYEVKESQ---GVVWVWMSQK 193
+ C YHGW F G+ +P + + C+ EV + G ++ Q+
Sbjct: 96 AKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQE 155
Query: 194 TPPNPDKLPWFENFARPGFQDVSTIHELPYDHSILLENLMDPAHIPISHDRTDWTAKRED 253
PP D L D + E + HS LE + P + I + +W A E+
Sbjct: 156 APPLMDYLG-----------DAAWYLEPMFKHSGGLELVGPPGKVVI---KANWKAPAEN 201
>pdb|2HMJ|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase
Phe-352-Val Mutant.
pdb|2HML|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Phenanthrene.
pdb|2HMN|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Anthracene
Length = 449
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 30/180 (16%)
Query: 86 LYLTKD----VPDD---APLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLID 138
L+LT D P D A +G+ ++++ + +G +R + + C HR L + +
Sbjct: 40 LFLTHDSLIPAPGDYVTAKMGI----DEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGN 95
Query: 139 GR-LECLYHGWQFEGEGKCVKIP-QLPADAKIPRSACVRTYEVKESQ---GVVWVWMSQK 193
+ C YHGW F G+ +P + + C+ EV + G ++ Q+
Sbjct: 96 AKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQE 155
Query: 194 TPPNPDKLPWFENFARPGFQDVSTIHELPYDHSILLENLMDPAHIPISHDRTDWTAKRED 253
PP D L D + E + HS LE + P + I + +W A E+
Sbjct: 156 APPLMDYLG-----------DAAWYLEPMFKHSGGLELVGPPGKVVI---KANWKAPAEN 201
>pdb|2B1X|A Chain A, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B1X|C Chain C, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B1X|E Chain E, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B24|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
pdb|2B24|C Chain C, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
pdb|2B24|E Chain E, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
Length = 470
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 102 VFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKIP 160
+ + Q ++ +D GE+R + + C HR ++ ++ + C YHGW + G V +P
Sbjct: 66 ISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVP 125
>pdb|1VCK|A Chain A, Crystal Structure Of Ferredoxin Component Of Carbazole
1,9a- Dioxygenase Of Pseudomonas Resinovorans Strain
Ca10
pdb|2DE5|D Chain D, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE5|E Chain E, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE5|F Chain F, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE6|D Chain D, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE6|E Chain E, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE6|F Chain F, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE7|D Chain D, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE7|E Chain E, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE7|F Chain F, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|D Chain D, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|E Chain E, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|F Chain F, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMH|D Chain D, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMH|E Chain E, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMH|F Chain F, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMI|D Chain D, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMI|E Chain E, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMI|F Chain F, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
Length = 115
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 107 IVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADA 166
+ +Y+ G+ + +D C H +A LSEG L +EC +HG F C +P A
Sbjct: 30 LAVYRVGD-QFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFN---VCTGMP-----A 80
Query: 167 KIPRSACVRTYEVKESQGVVWVWMSQK 193
P + + +EV+ +G V+V +K
Sbjct: 81 SSPCTVPLGVFEVEVKEGEVYVAGEKK 107
>pdb|1ULI|A Chain A, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULI|C Chain C, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULI|E Chain E, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULJ|A Chain A, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
pdb|1ULJ|C Chain C, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
pdb|1ULJ|E Chain E, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
Length = 460
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 107 IVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGR-LECLYHGWQFEGEGKCVKIP 160
+++ + NGE+R + ++C HR ++ + + C YHGW ++ G V +P
Sbjct: 81 VMVVRQKNGEIRVFLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVP 135
>pdb|2QPZ|A Chain A, Naphthalene 1,2-Dioxygenase Rieske Ferredoxin
Length = 103
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 15/104 (14%)
Query: 80 TEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDG 139
T +W D+ + LG+TV +++ LY + GE+ + C H A++S+G L
Sbjct: 1 TVKWIEAVALSDILEGDVLGVTVEGKELALY-EVEGEIYATDNLCTHGSARMSDGYLEGR 59
Query: 140 RLECLYHGWQFE---GEGKCVKIPQLPADAKIPRSACVRTYEVK 180
+EC H +F+ G+ C + Q ++TY VK
Sbjct: 60 EIECPLHQGRFDVCTGKALCAPVTQ-----------NIKTYPVK 92
>pdb|3N0Q|A Chain A, Crystal Structure Of A Putative Aromatic-Ring
Hydroxylating Dioxygenase (Tm1040_3219) From
Silicibacter Sp. Tm1040 At 1 Resolution
Length = 409
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 102 VFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDG-RLECLYHGWQFEGEGKCVKIP 160
V + +++ + + +R + + C HR + + + + + +L C YH W +E +G+ +
Sbjct: 62 VGNYNVIIVRGADNVIRAFHNACRHRGSVICKAKKGNNPKLVCPYHQWTYELDGRLLWAR 121
Query: 161 QLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLPWFENFA 208
D + P ++T +E G++++ ++ D+ P FE FA
Sbjct: 122 DXGPDFE-PSRHGLKTVHCRELAGLIYICLA-------DEAPDFERFA 161
>pdb|2BMO|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase
pdb|2BMQ|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With Nitrobenzene
pdb|2BMR|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With 3-Nitrotoluene
Length = 447
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 34/190 (17%)
Query: 86 LYLTKDV----PDD---APLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLID 138
L+LT D P D A +G+ ++++ + +G +R + + C HR L + +
Sbjct: 38 LFLTHDSLIPSPGDYVKAKMGV----DEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGN 93
Query: 139 GR-LECLYHGWQFEGEGKCVKIP---QLPADAKIPRSACVRTYEV---KESQGVVWVWMS 191
+ C YHGW + G+ +P +L DA + C+ EV + G ++
Sbjct: 94 AKGFVCGYHGWGYGSNGELQSVPFEKELYGDA--IKKKCLGLKEVPRIESFHGFIYGCFD 151
Query: 192 QKTPPNPDKLPWFENFARPGFQDVSTIHELPYDHSILLENLMDPAHIPISHDRTDWTAKR 251
+ PP D L D + E + +S LE + P + + + +W +
Sbjct: 152 AEAPPLIDYLG-----------DAAWYLEPTFKYSGGLELVGPPGKVVV---KANWKSFA 197
Query: 252 EDAQPLGFEV 261
E+ G+ V
Sbjct: 198 ENFVGDGYHV 207
>pdb|2GBW|A Chain A, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBW|C Chain C, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBW|E Chain E, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBX|A Chain A, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
pdb|2GBX|C Chain C, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
pdb|2GBX|E Chain E, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
Length = 454
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 104 DQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGR-LECLYHGWQFEGEGKCVKIP 160
+ +++L +G R + + C HR ++ + + C YHGW F +G V +P
Sbjct: 60 EDKVILSHQSDGTFRAFINSCSHRGNQICHADSGNAKAFVCNYHGWVFGQDGSLVDVP 117
>pdb|2CKF|A Chain A, Crystal Structure Of The Terminal Component Of The Pah-
Hydroxylating Dioxygenase From Sphingomonas Sp Chy-1
pdb|2CKF|C Chain C, Crystal Structure Of The Terminal Component Of The Pah-
Hydroxylating Dioxygenase From Sphingomonas Sp Chy-1
pdb|2CKF|E Chain E, Crystal Structure Of The Terminal Component Of The Pah-
Hydroxylating Dioxygenase From Sphingomonas Sp Chy-1
Length = 454
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 104 DQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGR-LECLYHGWQFEGEGKCVKIP 160
+ +I+L +G R + + C HR ++ + + C YHGW + +G V +P
Sbjct: 60 EDKIILSHQSDGTFRAFINSCTHRGNQICHADSGNAKAFVCNYHGWVYGQDGSLVDVP 117
>pdb|2XSH|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSO|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|M Chain M, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|O Chain O, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|Q Chain Q, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|S Chain S, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|U Chain U, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|W Chain W, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
Length = 459
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 83 WYPLYLTKDVPDDAPLGLTVFDQQ-IVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGR- 140
W L VP+ T + +V+ + + ++ + ++C HR ++ + +
Sbjct: 58 WLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKA 117
Query: 141 LECLYHGWQFEGEGKCVKIP 160
C YHGW ++ GK V +P
Sbjct: 118 FTCSYHGWAYDIAGKLVNVP 137
>pdb|2YFI|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFJ|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFL|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
Length = 459
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 83 WYPLYLTKDVPDDAPLGLTVFDQQ-IVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGR- 140
W L VP+ T + +V+ + + ++ + ++C HR ++ + +
Sbjct: 58 WLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKA 117
Query: 141 LECLYHGWQFEGEGKCVKIP 160
C YHGW ++ GK V +P
Sbjct: 118 FTCSYHGWAYDIAGKLVNVP 137
>pdb|2XR8|A Chain A, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|C Chain C, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|E Chain E, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|G Chain G, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|I Chain I, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|K Chain K, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|M Chain M, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|O Chain O, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|S Chain S, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|U Chain U, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|W Chain W, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XRX|A Chain A, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|C Chain C, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|E Chain E, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|G Chain G, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|I Chain I, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|K Chain K, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|M Chain M, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|O Chain O, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|S Chain S, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|U Chain U, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|W Chain W, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
Length = 459
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 83 WYPLYLTKDVPDDAPLGLTVFDQQ-IVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGR- 140
W L VP+ T + +V+ + + ++ + ++C HR ++ + +
Sbjct: 58 WLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKA 117
Query: 141 LECLYHGWQFEGEGKCVKIP 160
C YHGW ++ GK V +P
Sbjct: 118 FTCSYHGWAYDIAGKLVNVP 137
>pdb|1WQL|A Chain A, Cumene Dioxygenase (Cuma1a2) From Pseudomonas Fluorescens
Ip01
Length = 459
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 11/55 (20%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 107 IVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGR-LECLYHGWQFEGEGKCVKIP 160
+++ + + ++ + ++C HR ++ + + C YHGW ++ G V +P
Sbjct: 84 VIVVRQKDRSIKVFLNQCRHRGMRIERSDFGNAKSFTCTYHGWAYDTAGNLVNVP 138
>pdb|1SJG|A Chain A, Solution Structure Of T4moc, The Rieske Ferredoxin
Component Of The Toluene 4-Monooxygenase Complex
Length = 112
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 117 LRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQF-EGEGKCVKIPQLPADAKIPRSACVR 175
++ YQ CPH+ LSEG G + C H W F +G G + P C+
Sbjct: 38 VKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN----------PDDCCLA 87
Query: 176 TYEVK 180
Y V+
Sbjct: 88 EYPVE 92
>pdb|3EN1|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase
pdb|3EQQ|A Chain A, Apo Toluene 2,3-Dioxygenase
Length = 450
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 107 IVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGR-LECLYHGWQFEGEGKCVKIP 160
+V+ + + + + ++C HR ++ + + C YHGW ++ G V +P
Sbjct: 79 VVVVRQKDASIAVFLNQCRHRGMRICRADAGNAKAFTCSYHGWAYDTAGNLVNVP 133
>pdb|1VM9|A Chain A, The X-Ray Structure Of The Cys84ala Cys85ala Double Mutant
Of The [2fe-2s] Ferredoxin Subunit Of Toluene-4-
Monooxygenase From Pseudomonas Mendocina Kr1
pdb|2Q3W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
The Cys84ala Cys85ala Double Mutant Of The [2fe-2s]
Ferredoxin Subunit Of Toluene- 4-Monooxygenase From
Pseudomonas Mendocina Kr1
Length = 111
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 117 LRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQF-EGEGKCVKIPQLPADAKIP 169
++ YQ CPH+ LSEG G + C H W F +G G + P A A+ P
Sbjct: 37 VKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN-PDDAALAEYP 89
>pdb|3GZX|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase In Complex
With Biphenyl From Comamonas Testosteroni Sp. Strain
B-356
pdb|3GZY|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase From
Comamonas Testosteroni Sp. Strain B-356
Length = 457
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/55 (20%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 107 IVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGR-LECLYHGWQFEGEGKCVKIP 160
+++ + + ++ + ++C HR ++ + + C YHGW ++ G V +P
Sbjct: 83 VIMVRQKDQSIKVFLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVP 137
>pdb|1FQT|A Chain A, Crystal Structure Of The Rieske-type Ferredoxin Associated
With Biphenyl Dioxygenase
pdb|1FQT|B Chain B, Crystal Structure Of The Rieske-type Ferredoxin Associated
With Biphenyl Dioxygenase
Length = 112
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 90 KDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGR-LECLYHGW 148
+DVP+ L + + ++ + +GEL QDRC H LS+G ++G +EC H
Sbjct: 13 RDVPEGEALKVESGGTSVAIF-NVDGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMG 71
Query: 149 QF 150
+F
Sbjct: 72 KF 73
>pdb|2E4P|A Chain A, Crystal Structure Of Bpha3 (Oxidized Form)
pdb|2E4P|B Chain B, Crystal Structure Of Bpha3 (Oxidized Form)
pdb|2E4Q|A Chain A, Crystal Structure Of Bpha3 (Reduced Form)
pdb|2E4Q|C Chain C, Crystal Structure Of Bpha3 (Reduced Form)
pdb|2YVJ|B Chain B, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 109
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 104 DQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGR-LECLYHGWQF 150
D Q V + +GE QD+C H LSEG +DG +EC H +F
Sbjct: 23 DAQKVAIFNVDGEFFATQDQCTHGEWSLSEGGYLDGDVVECSLHMGKF 70
>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent
Monooxygenase From Pseudomonas Aeruginosa
Length = 399
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 289 APCVLQNNRELVDSKTGEKHYFTGLFLCRPTGQGKSMLIVRF 330
APCV + NR VDS+ G +++ P G ++ L+V F
Sbjct: 194 APCVAERNRLYVDSQGGLAYFY-------PIGFDRARLVVSF 228
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 95 DAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHG 147
DAP GLTV D L +G L DRCP R +L E + R + + G
Sbjct: 193 DAP-GLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARRDAVLAG 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,220,743
Number of Sequences: 62578
Number of extensions: 713237
Number of successful extensions: 1343
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1318
Number of HSP's gapped (non-prelim): 35
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)