Query 039074
Match_columns 534
No_of_seqs 405 out of 2260
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:04:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02518 pheophorbide a oxygen 100.0 8.8E-89 1.9E-93 735.9 45.0 422 71-529 79-530 (539)
2 PLN02281 chlorophyllide a oxyg 100.0 1.7E-54 3.7E-59 460.9 33.2 305 78-406 216-534 (536)
3 PLN00095 chlorophyllide a oxyg 100.0 6.2E-50 1.3E-54 409.4 23.1 279 76-364 66-371 (394)
4 COG4638 HcaE Phenylpropionate 100.0 3E-43 6.6E-48 370.4 22.9 328 59-401 4-356 (367)
5 TIGR03229 benzo_1_2_benA benzo 100.0 1E-36 2.3E-41 324.1 17.4 192 55-246 11-219 (433)
6 TIGR03228 anthran_1_2_A anthra 100.0 5.4E-35 1.2E-39 310.7 12.1 193 54-246 10-217 (438)
7 cd04338 Rieske_RO_Alpha_Tic55 100.0 7.7E-33 1.7E-37 251.0 14.5 126 72-197 7-132 (134)
8 cd03537 Rieske_RO_Alpha_PrnD T 100.0 1.4E-31 3E-36 238.6 13.7 113 81-194 2-118 (123)
9 cd03480 Rieske_RO_Alpha_PaO Ri 100.0 1.2E-30 2.6E-35 237.7 13.8 129 68-196 3-135 (138)
10 cd03545 Rieske_RO_Alpha_OHBDO_ 100.0 9E-31 1.9E-35 241.7 11.5 137 60-196 2-149 (150)
11 cd04337 Rieske_RO_Alpha_Cao Ca 100.0 1.3E-29 2.7E-34 228.4 13.6 116 74-194 9-124 (129)
12 cd03479 Rieske_RO_Alpha_PhDO_l 100.0 1.6E-29 3.5E-34 232.1 13.7 119 75-193 14-133 (144)
13 cd03531 Rieske_RO_Alpha_KSH Th 100.0 3E-29 6.5E-34 221.7 13.7 112 82-196 1-112 (115)
14 cd03548 Rieske_RO_Alpha_OMO_CA 100.0 8.9E-29 1.9E-33 225.0 14.1 120 75-196 7-129 (136)
15 cd03532 Rieske_RO_Alpha_VanA_D 100.0 9.5E-29 2.1E-33 218.8 12.3 112 79-194 2-113 (116)
16 cd03538 Rieske_RO_Alpha_AntDO 100.0 1.2E-28 2.7E-33 226.5 11.7 133 63-195 3-144 (146)
17 cd03541 Rieske_RO_Alpha_CMO Ri 99.9 2.5E-27 5.5E-32 210.0 13.1 112 82-193 1-114 (118)
18 cd03472 Rieske_RO_Alpha_BPDO_l 99.9 2E-27 4.3E-32 213.8 12.4 120 76-195 2-126 (128)
19 cd03539 Rieske_RO_Alpha_S5H Th 99.9 3.5E-27 7.6E-32 212.5 12.2 114 83-196 1-128 (129)
20 cd03469 Rieske_RO_Alpha_N Ries 99.9 1.1E-26 2.5E-31 205.7 12.1 113 83-195 1-116 (118)
21 cd03535 Rieske_RO_Alpha_NDO Ri 99.9 5.7E-26 1.2E-30 203.1 12.5 115 81-195 1-121 (123)
22 cd03536 Rieske_RO_Alpha_DTDO T 99.9 1.3E-25 2.8E-30 200.8 12.3 114 83-196 1-120 (123)
23 cd03530 Rieske_NirD_small_Baci 99.9 1.3E-24 2.9E-29 186.4 11.7 97 83-189 1-98 (98)
24 cd03528 Rieske_RO_ferredoxin R 99.9 2E-24 4.4E-29 185.0 11.9 96 83-188 1-97 (98)
25 cd03474 Rieske_T4moC Toluene-4 99.9 7.2E-24 1.6E-28 185.1 12.7 102 83-194 1-103 (108)
26 cd03542 Rieske_RO_Alpha_HBDO R 99.9 7.7E-24 1.7E-28 189.2 12.6 114 83-196 1-122 (123)
27 cd03529 Rieske_NirD Assimilato 99.9 9.4E-24 2E-28 183.0 11.6 97 83-189 1-103 (103)
28 TIGR02377 MocE_fam_FeS Rieske 99.9 1.2E-23 2.6E-28 181.7 12.0 100 82-190 1-101 (101)
29 TIGR02378 nirD_assim_sml nitri 99.9 1.1E-23 2.3E-28 183.2 11.3 99 82-190 1-105 (105)
30 PRK09965 3-phenylpropionate di 99.9 1.2E-22 2.5E-27 177.1 11.9 101 82-193 2-104 (106)
31 cd03478 Rieske_AIFL_N AIFL (ap 99.9 1.2E-22 2.7E-27 173.3 10.6 92 86-187 3-95 (95)
32 PF13806 Rieske_2: Rieske-like 99.9 1.1E-21 2.4E-26 170.0 12.5 98 82-189 1-104 (104)
33 PRK09511 nirD nitrite reductas 99.8 6.7E-21 1.5E-25 166.4 11.9 98 82-189 3-107 (108)
34 PF00355 Rieske: Rieske [2Fe-2 99.8 8.2E-21 1.8E-25 162.3 10.6 93 82-184 1-97 (97)
35 cd03467 Rieske Rieske domain; 99.8 3.7E-20 8E-25 158.7 11.3 95 83-186 1-97 (98)
36 COG2146 {NirD} Ferredoxin subu 99.8 4.5E-20 9.8E-25 160.5 11.8 102 81-191 3-106 (106)
37 cd03477 Rieske_YhfW_C YhfW fam 99.8 2.2E-19 4.7E-24 152.1 10.3 88 86-183 2-89 (91)
38 cd08878 RHO_alpha_C_DMO-like C 99.8 1.5E-18 3.3E-23 164.7 12.4 173 218-400 5-195 (196)
39 cd03476 Rieske_ArOX_small Smal 99.7 1.2E-17 2.6E-22 149.6 11.0 96 84-189 4-114 (126)
40 cd03471 Rieske_cytochrome_b6f 99.7 3.9E-16 8.6E-21 139.0 12.7 84 98-192 28-113 (126)
41 cd03473 Rieske_CMP_Neu5Ac_hydr 99.7 2.5E-16 5.4E-21 135.3 8.5 72 89-161 14-89 (107)
42 PF08417 PaO: Pheophorbide a o 99.6 2.4E-16 5.1E-21 133.8 7.3 86 287-373 1-86 (92)
43 TIGR02694 arsenite_ox_S arseni 99.6 9.6E-16 2.1E-20 137.7 10.6 95 84-188 7-115 (129)
44 cd03470 Rieske_cytochrome_bc1 99.6 2.1E-14 4.5E-19 128.7 11.1 92 88-188 5-125 (126)
45 cd00680 RHO_alpha_C C-terminal 99.5 1.1E-13 2.4E-18 130.3 14.2 168 217-400 3-186 (188)
46 PRK13474 cytochrome b6-f compl 99.4 8.2E-13 1.8E-17 125.3 11.9 88 93-190 73-163 (178)
47 cd08885 RHO_alpha_C_1 C-termin 99.3 3E-11 6.5E-16 115.5 14.4 170 217-400 4-188 (190)
48 TIGR01416 Rieske_proteo ubiqui 99.3 2.7E-11 5.8E-16 114.6 10.2 94 82-185 40-169 (174)
49 cd08883 RHO_alpha_C_CMO-like C 99.3 6.6E-11 1.4E-15 112.1 12.8 165 218-400 5-173 (175)
50 cd08886 RHO_alpha_C_2 C-termin 99.2 1E-10 2.2E-15 111.6 12.6 167 217-399 4-181 (182)
51 cd08887 RHO_alpha_C_3 C-termin 99.2 1.2E-10 2.7E-15 110.5 13.0 168 217-400 4-183 (185)
52 PF00848 Ring_hydroxyl_A: Ring 99.2 1.5E-11 3.2E-16 117.3 3.2 169 219-400 12-206 (209)
53 cd08884 RHO_alpha_C_GbcA-like 99.1 7.2E-10 1.6E-14 107.7 14.3 169 217-400 14-203 (205)
54 cd03475 Rieske_SoxF_SoxL SoxF 98.8 8.2E-09 1.8E-13 96.5 7.9 67 114-189 74-159 (171)
55 PF11723 Aromatic_hydrox: Homo 98.5 4.4E-07 9.5E-12 88.1 9.6 186 206-403 17-238 (240)
56 cd08880 RHO_alpha_C_ahdA1c-lik 98.5 9.6E-07 2.1E-11 87.0 11.1 143 219-372 6-184 (222)
57 cd08882 RHO_alpha_C_MupW-like 98.4 1.6E-06 3.5E-11 86.6 11.9 104 284-400 128-241 (243)
58 COG0723 QcrA Rieske Fe-S prote 98.3 9.3E-07 2E-11 84.1 6.3 76 104-188 83-164 (177)
59 cd08881 RHO_alpha_C_NDO-like C 98.1 1.4E-05 3E-10 78.0 8.6 137 218-371 10-156 (206)
60 cd08879 RHO_alpha_C_AntDO-like 98.0 1.9E-05 4.2E-10 78.6 7.4 29 218-246 5-33 (237)
61 KOG1671 Ubiquinol cytochrome c 97.9 1.5E-05 3.3E-10 75.2 5.9 73 89-161 92-190 (210)
62 TIGR03171 soxL2 Rieske iron-su 97.6 0.00011 2.4E-09 74.7 6.9 68 114-190 175-277 (321)
63 KOG1336 Monodehydroascorbate/f 95.5 0.0064 1.4E-07 65.3 1.9 39 126-164 1-40 (478)
64 PF14015 DUF4231: Protein of u 73.2 19 0.00041 30.9 7.9 35 454-488 3-37 (112)
65 TIGR02949 anti_SigH_actin anti 63.5 6.3 0.00014 32.7 2.6 31 450-480 27-57 (84)
66 PF13490 zf-HC2: Putative zinc 63.0 3.4 7.4E-05 28.2 0.8 18 450-467 19-36 (36)
67 PRK10853 putative reductase; P 62.5 4.8 0.0001 35.6 1.8 17 458-474 6-22 (118)
68 PF09740 DUF2043: Uncharacteri 62.0 4.2 9E-05 35.6 1.3 34 115-151 63-98 (110)
69 cd03034 ArsC_ArsC Arsenate Red 59.4 5.7 0.00012 34.7 1.7 17 458-474 5-21 (112)
70 cd03033 ArsC_15kD Arsenate Red 59.3 5.8 0.00013 34.9 1.7 17 458-474 6-22 (113)
71 PF03960 ArsC: ArsC family; I 57.6 6.1 0.00013 34.2 1.6 17 458-474 2-18 (110)
72 COG1393 ArsC Arsenate reductas 56.5 7 0.00015 34.7 1.8 18 458-475 7-24 (117)
73 PRK10026 arsenate reductase; P 56.3 6.8 0.00015 35.9 1.7 17 458-474 8-24 (141)
74 cd03035 ArsC_Yffb Arsenate Red 54.3 7.9 0.00017 33.5 1.8 17 458-474 5-21 (105)
75 TIGR00014 arsC arsenate reduct 52.0 9 0.00019 33.6 1.7 17 458-474 5-21 (114)
76 PRK13344 spxA transcriptional 48.1 11 0.00025 34.0 1.8 17 458-474 6-22 (132)
77 TIGR01616 nitro_assoc nitrogen 46.0 13 0.00027 33.4 1.8 17 458-474 7-23 (126)
78 COG1645 Uncharacterized Zn-fin 45.8 12 0.00026 33.8 1.6 30 119-151 26-55 (131)
79 cd03036 ArsC_like Arsenate Red 44.9 14 0.00029 32.2 1.7 17 458-474 5-21 (111)
80 PRK12559 transcriptional regul 39.9 18 0.00039 32.6 1.8 17 458-474 6-22 (131)
81 cd03032 ArsC_Spx Arsenate Redu 37.4 21 0.00045 31.2 1.8 17 458-474 6-22 (115)
82 cd02977 ArsC_family Arsenate R 35.4 24 0.00051 30.1 1.8 18 458-475 5-22 (105)
83 PF14015 DUF4231: Protein of u 35.1 2E+02 0.0044 24.4 7.6 42 451-492 3-44 (112)
84 PRK01655 spxA transcriptional 35.0 24 0.00052 31.7 1.8 17 458-474 6-22 (131)
85 TIGR01617 arsC_related transcr 34.2 25 0.00055 30.7 1.8 17 458-474 5-21 (117)
86 PF12266 DUF3613: Protein of u 30.0 90 0.002 24.9 4.0 50 354-409 14-63 (67)
87 PF11239 DUF3040: Protein of u 27.2 2.4E+02 0.0051 23.1 6.3 16 450-465 24-39 (82)
88 PF09788 Tmemb_55A: Transmembr 26.5 16 0.00034 36.6 -1.0 19 450-468 76-94 (256)
89 KOG4684 Uncharacterized conser 26.2 2E+02 0.0044 28.2 6.4 19 450-468 180-198 (275)
90 KOG4684 Uncharacterized conser 26.1 17 0.00036 35.5 -0.9 20 450-469 91-110 (275)
91 cd03027 GRX_DEP Glutaredoxin ( 25.1 49 0.0011 25.9 1.8 17 459-475 8-24 (73)
92 PRK00420 hypothetical protein; 25.0 53 0.0011 29.0 2.1 32 119-152 21-52 (112)
93 PF11572 DUF3234: Protein of u 22.1 25 0.00055 29.7 -0.4 51 78-132 4-54 (103)
94 PF10080 DUF2318: Predicted me 21.8 4.8E+02 0.01 22.6 7.4 59 91-152 1-64 (102)
95 PF05055 DUF677: Protein of un 21.3 2.1E+02 0.0046 30.1 6.1 13 467-479 171-183 (336)
96 TIGR03823 FliZ flagellar regul 20.8 48 0.001 30.8 1.1 53 447-499 6-62 (168)
97 PF12304 BCLP: Beta-casein lik 20.7 4E+02 0.0087 25.6 7.1 39 483-521 54-96 (188)
98 PRK10334 mechanosensitive chan 20.0 5E+02 0.011 26.6 8.4 28 495-522 90-117 (286)
99 PRK11582 flagella biosynthesis 20.0 49 0.0011 30.8 1.0 54 447-500 6-63 (169)
No 1
>PLN02518 pheophorbide a oxygenase
Probab=100.00 E-value=8.8e-89 Score=735.91 Aligned_cols=422 Identities=30% Similarity=0.582 Sum_probs=346.2
Q ss_pred cccccccccccCcEEeeecCCCCCCCcEEEEEcCEEEEEEEe-cCCcEEEEeCCCCCCCCccccCccc-ccEEEccCCCe
Q 039074 71 ERQVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKD-GNGELRCYQDRCPHRLAKLSEGQLI-DGRLECLYHGW 148 (534)
Q Consensus 71 ~~~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~-~~G~~~a~~d~CpHRga~Ls~G~i~-~~~l~CpyHGW 148 (534)
...+.+|+|+++||+|+.++||++++++.++++|++|||||+ .+|+++||+|+||||+++||+|+++ ++.|+||||||
T Consensus 79 ~~~~~~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW 158 (539)
T PLN02518 79 ESSDSKFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGW 158 (539)
T ss_pred cccchhhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCCCC
Confidence 445678999999999999999988889999999999999999 8999999999999999999999996 78999999999
Q ss_pred EEecCCceeecCCCCCCC-----CCCccCccceEEEEEecCeEEEEcCCCC--CCCCCCCCccc-cccCCCceeeeeEEE
Q 039074 149 QFEGEGKCVKIPQLPADA-----KIPRSACVRTYEVKESQGVVWVWMSQKT--PPNPDKLPWFE-NFARPGFQDVSTIHE 220 (534)
Q Consensus 149 ~Fd~~G~c~~iP~~~~~~-----~~~~~~~l~~~pv~~~~G~Vwv~~~~~~--~~~~~~lP~~~-~~~~~~~~~~~~~~~ 220 (534)
+||++|+|+.||+.+... .+++++|+++|||+|++|+||||+++++ .++...+|.++ ++++++|......++
T Consensus 159 ~Fd~~G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~~~a~~~~~P~~~~~~~~~~~~~~~~~~~ 238 (539)
T PLN02518 159 SFDGCGSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWERAQATKPPMLPDEFDDPEFSTVTIQRD 238 (539)
T ss_pred EEcCCCCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCccccccccccCCCCcccccCCCceeEEEEEE
Confidence 999999999999865332 2456789999999999999999998652 23456778774 788889987777889
Q ss_pred eecChhhhcccCCCCccCccccCCcccccccccCCCceEEEEeeccCccccccCCCCCCCCCeEEEEecCeeeecceeee
Q 039074 221 LPYDHSILLENLMDPAHIPISHDRTDWTAKREDAQPLGFEVTERTDRGFAGRWGKEKDEPLPNFLRFEAPCVLQNNRELV 300 (534)
Q Consensus 221 ~~~~~~~~~EN~lD~~H~~~~H~~~~~~~~r~~~~p~~~~v~~~~~~gf~~~~~~~~~~~~~~~~~F~~P~~~~~~~~~~ 300 (534)
++|+|++++||++|++|++|+|++++ ++++++.+..++++..+..||.+.+. .+.....+|.+||++.+.+...
T Consensus 239 ~~~~~~~l~EN~lD~sH~pfvH~~~~--G~~~~~~~~~~~v~~~~~~Gf~g~~~----~~~~~~~~F~~P~~~~~~~~~~ 312 (539)
T PLN02518 239 LFYGYDTLMENVSDPSHIDFAHHKVT--GRRDRAKPLPFKVESSGPWGFAGANS----DNPRITAKFVAPCYYINKIEID 312 (539)
T ss_pred EecCchhHHHhCCccchhceeccccc--cCccccccccceEEEcCCCccccccc----CCCceEEEEECCeEEEEeeeee
Confidence 99999999999999999999999986 56677777778887766667765332 2334568899999987765442
Q ss_pred cC--CCCce-eEEEEEEEeeeCCCCeEEEEEEEecCCCC------cccccchhhhhhhhhhhhHHhHHHHHHHHHHhhhh
Q 039074 301 DS--KTGEK-HYFTGLFLCRPTGQGKSMLIVRFGATKRS------PLAKLFPKWYFHQNASKVFEQDMGFLSSQNEVLMK 371 (534)
Q Consensus 301 ~~--~~G~~-~~~~~v~~~~Pv~pg~trl~~~~~~~~~~------~~~~~~p~w~~h~~~~~Vl~eD~~iL~~Qe~~l~~ 371 (534)
.. ..|.. ..+..+++++|+++|+||+|+++.+++.. .+.+++|+|+.|..+++|||||+.+||.||+.++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~tP~s~g~tr~f~~~~Rnf~~~~~~~~~~~k~~PrW~~h~~~n~Vl~~D~~~lh~Qe~~~~~ 392 (539)
T PLN02518 313 TKLPIVGDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSMPGPAWWQLVPRWYEHWTSNKVYDGDMIVLQGQEKIFLS 392 (539)
T ss_pred ccccCCCCcceEEEEEEEEEECCCCeEEEEEEecccchhccccchhhhhcCchHHHHhhhccchHhHHHHHHHHHHHHhh
Confidence 10 01211 22345678899999999999988877631 13389999999999999999999999999999877
Q ss_pred cCC---------CccccccccCcCcHHHHHHHHHHHHhCCCCCCCCCCcC--CCCCCCccccccCCCcccccccCCCCCC
Q 039074 372 ETV---------PTKELYLNLRSSDTWVAEYRKWMDKVGHGMPYHFGHST--ISLPKVPAVVEHAPAGLVAGVSASSPAK 440 (534)
Q Consensus 372 ~~~---------~~k~~y~~~~~aD~~ViafRrWl~~~~~g~P~~~g~~~--~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 440 (534)
.+. +.|.+|+ |++||++|++|||||+++|+|+|.|+|..+ ..+|+.
T Consensus 393 ~~~e~~~~v~~~w~k~~~~-Pt~aD~~viayR~Wl~~~g~g~~~w~~~~~~~~~lp~~---------------------- 449 (539)
T PLN02518 393 KSGEGSADVNAQYTKLTFT-PTQADRFVLAFRNWLRRHGNSQPEWFGETSSQQPLPST---------------------- 449 (539)
T ss_pred ccccccccchhhhhhhccC-CCchhHHHHHHHHHHHHhCcCCCCcccCCcccCCCCCC----------------------
Confidence 543 2355555 589999999999999999998888876432 112221
Q ss_pred CcCCCCCcchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHH
Q 039074 441 GAIGTMHAPNLANRYFRHVIHCKGCSSVIKAFSTWKNSLSVVAAALTVLAILASGRQWKAFCLASASLCLAGVYACSTAI 520 (534)
Q Consensus 441 ~~~~~~~~~~lldRy~~Ht~~C~sC~~Al~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~a~~~~a~~~~~~~~~ 520 (534)
.++++||||||||||+||+||++|||+|+++|+++++++++++++++++...++++++++++++++++.|.+.+
T Consensus 450 ----~~~~~~lldRy~~Ht~~C~SC~~Alk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 523 (539)
T PLN02518 450 ----VLSKRQMLDRFEQHTLNCSSCKGAYKAFQTLQKVLIGATVVFAATAGIPSDVQLRLILAGLALISAASAYALKE-- 523 (539)
T ss_pred ----CCCHHHHhHHHHhhCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH--
Confidence 24689999999999999999999999999999999999999999888888888888888887777777777555
Q ss_pred HHhhccccc
Q 039074 521 AMNTTNFIR 529 (534)
Q Consensus 521 ~~~~~~~~~ 529 (534)
+++||++
T Consensus 524 --~~~~f~~ 530 (539)
T PLN02518 524 --LEKNFVF 530 (539)
T ss_pred --HHhhcee
Confidence 8888876
No 2
>PLN02281 chlorophyllide a oxygenase
Probab=100.00 E-value=1.7e-54 Score=460.93 Aligned_cols=305 Identities=25% Similarity=0.569 Sum_probs=234.4
Q ss_pred ccccCcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEecCCcee
Q 039074 78 DWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCV 157 (534)
Q Consensus 78 ~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~~G~c~ 157 (534)
.|++.||+|+.++||++++++.++++|++|||||+.+|+++|++|+|||||+||++|+++++.|+||||||+||.||+|+
T Consensus 216 ~lrn~Wy~Va~s~EL~~g~~~~v~llG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v~g~~L~CPYHGW~FD~dG~cv 295 (536)
T PLN02281 216 HLKNFWYPVAFTADLKHDTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECK 295 (536)
T ss_pred hhhcccEEEEEHHHCCCCCeEEEEECCEEEEEEECCCCeEEEEeCcCcCCCCccccceeeCCEEEeCCCCCEECCCCCEe
Confidence 68999999999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCCCCCCCCccccccCC-Cceeee-eEEEeecChhhhcccCCCC
Q 039074 158 KIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLPWFENFARP-GFQDVS-TIHELPYDHSILLENLMDP 235 (534)
Q Consensus 158 ~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~~~~~~~lP~~~~~~~~-~~~~~~-~~~~~~~~~~~~~EN~lD~ 235 (534)
.+|+.+ +.+.++++|||+|++|+||||++++++ .|.+++++++ +|.... ...++++||++++||++|+
T Consensus 296 ~iP~~~-----~~~~~l~sYPV~e~~GlVwV~lgd~~~-----aP~~p~ld~p~~~~~~~~~~~~~~~nwkllvENllD~ 365 (536)
T PLN02281 296 KMPSTK-----LLKVKIKSLPCLEQEGMIWIWPGDEPP-----APILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDL 365 (536)
T ss_pred eCCCCc-----cccCCcceEeEEEECCEEEEEeCCCCC-----CCCCccccCcccceEEEEEEEEecCCHHHHHHhcccc
Confidence 999753 236789999999999999999986432 2556666665 565443 3678999999999999999
Q ss_pred ccCccccCCcccccccccCCCceEEEEeeccCccccccCCCCCCCCCeEEEEecCeeeecceeeecCCCC----c---ee
Q 039074 236 AHIPISHDRTDWTAKREDAQPLGFEVTERTDRGFAGRWGKEKDEPLPNFLRFEAPCVLQNNRELVDSKTG----E---KH 308 (534)
Q Consensus 236 ~H~~~~H~~~~~~~~r~~~~p~~~~v~~~~~~gf~~~~~~~~~~~~~~~~~F~~P~~~~~~~~~~~~~~G----~---~~ 308 (534)
+|++|+|+++++. ..+. +...+.. ....++.+.+... ...++|.+||++.+.+.+.+.+.+ . ..
T Consensus 366 ~H~~fvH~~t~g~--~~~~-p~~v~~~-~~~~~~~p~~~~~-----pv~~~f~aP~~v~l~i~~~~~G~~~~~~~~~~~~ 436 (536)
T PLN02281 366 AHAPFTHTSTFAK--GWSV-PSLVKFL-TPTSGLQGYWDPY-----PIDMEFKPPCIVLSTIGISKPGKLEGKSTQQCAT 436 (536)
T ss_pred ccccccCcccccC--cccC-CceeEEe-cccCCCCcccccC-----CceEEEECcEEEEEeeccccCCcccccccccccc
Confidence 9999999998753 2222 2222222 1122333333221 236899999999887655431110 0 11
Q ss_pred EEEEEEEeeeCCCCeEEEEEEEecCCCCcc--cccchhhhhhhhhhhhHHhHHHHHHHHHHhhhhcCCCccccccccCcC
Q 039074 309 YFTGLFLCRPTGQGKSMLIVRFGATKRSPL--AKLFPKWYFHQNASKVFEQDMGFLSSQNEVLMKETVPTKELYLNLRSS 386 (534)
Q Consensus 309 ~~~~v~~~~Pv~pg~trl~~~~~~~~~~~~--~~~~p~w~~h~~~~~Vl~eD~~iL~~Qe~~l~~~~~~~k~~y~~~~~a 386 (534)
....+++|||+++++||+++++.+++...+ ..+...|+ +...+.+|+||+.|||.||+.+... + +..|+ +.++
T Consensus 437 ~~~~~h~~TPeT~~sTryF~~~~Rnf~~~~~d~~~~~~~l-~~~~~~vF~ED~~iLEaQQ~~i~~~--~-~~~~l-~l~a 511 (536)
T PLN02281 437 HLHQLHVCLPSSKNKTRLLYRMSLDFAPILKNLPFMEHLW-RHFAEQVLNEDLRLVLGQQERMLNG--A-NIWNL-PVAY 511 (536)
T ss_pred ceEEEEEEEECCCCeEEEEEEecccCccccccccchHHHH-HHHhhHhhHhHHHHHHHHHHHhhcc--c-ccccc-cchh
Confidence 234678899999999999999998886542 22223433 3357789999999999999998763 2 23344 4679
Q ss_pred cHHHHHHHHHHHHh---CCCCCC
Q 039074 387 DTWVAEYRKWMDKV---GHGMPY 406 (534)
Q Consensus 387 D~~ViafRrWl~~~---~~g~P~ 406 (534)
|+++++|||||+++ +++.||
T Consensus 512 D~~~v~~RRWl~~~~~~~~~~pf 534 (536)
T PLN02281 512 DKLGVRYRLWRNAVDRGDDKLPF 534 (536)
T ss_pred hHHHHHHHHHHHHhhcccCCCCC
Confidence 99999999999987 345665
No 3
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=100.00 E-value=6.2e-50 Score=409.43 Aligned_cols=279 Identities=24% Similarity=0.460 Sum_probs=221.3
Q ss_pred ccccccCcEEeeecCCC-CCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEecCC
Q 039074 76 DYDWTEEWYPLYLTKDV-PDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEG 154 (534)
Q Consensus 76 ~~~~~~~W~~v~~~~dl-~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~~G 154 (534)
...-+++||+|++++|| +++.++.++++|++|||||+.+|+++||+|.||||+++|++|+++++.|+||||||+||.+|
T Consensus 66 ~~~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~~G 145 (394)
T PLN00095 66 TADARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYETGG 145 (394)
T ss_pred CCchhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEECCCCCEEEEeccCCCCCCccccCcccCCEEEecCCCcEECCCC
Confidence 34457899999999999 66778999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCCC--------C--------CCC-CccccccCCCceeeee
Q 039074 155 KCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPN--------P--------DKL-PWFENFARPGFQDVST 217 (534)
Q Consensus 155 ~c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~~~~--------~--------~~l-P~~~~~~~~~~~~~~~ 217 (534)
+|+.+|+.+. +.++.++++|||++++|+||||+++..+++ + ..+ |.+++. +||..+..
T Consensus 146 ~C~~iP~~~~---~~~~~~v~tYPV~e~dGlVwVw~G~~~p~dflg~~~~~e~~~~~~~~~~~P~~~~~~--~gf~~~ae 220 (394)
T PLN00095 146 ECAKMPSCKK---FLKGVFADAAPVIERDGFIFLWAGESDPADFVGPEAACESIDDDVLAANEPGMFAPG--EGFTPMAE 220 (394)
T ss_pred CEeeCCCccc---cccccccceEEEEEECCEEEEEeCCcchhhhccccccccccccchhhccCCcccCCC--CCceEEEE
Confidence 9999997532 344578999999999999999998644331 1 122 234443 47877554
Q ss_pred -EEEeecChhhhcccCCCCccC-ccccCCcc--cccccccCCCceEEEEeeccCccccccCCCCCCCCCeEEEEecCeee
Q 039074 218 -IHELPYDHSILLENLMDPAHI-PISHDRTD--WTAKREDAQPLGFEVTERTDRGFAGRWGKEKDEPLPNFLRFEAPCVL 293 (534)
Q Consensus 218 -~~~~~~~~~~~~EN~lD~~H~-~~~H~~~~--~~~~r~~~~p~~~~v~~~~~~gf~~~~~~~~~~~~~~~~~F~~P~~~ 293 (534)
++|+||+|.++|||+||++|+ ||+|+.++ ..++|.++.++..++......++.+.|. .++..++|.+||++
T Consensus 221 v~~Dlp~d~~~L~ENllD~aH~a~~~~t~tf~~~~~~r~~~~~~~~~~~~~~~~~l~g~~~-----~~p~~~~F~ppc~~ 295 (394)
T PLN00095 221 VIADIKLDADEVLERLLAIGERARREATVSFDVSDAKRGRDALFPVDGTKIIAKVLRGGRD-----AVPQSATFKPACVI 295 (394)
T ss_pred EEEeccccHHHHHHhhcCccccCCccCceeeecccccccccCccchhhhhhhhhhheeecc-----cCCcceeEcCceee
Confidence 589999999999999999995 88886554 1356777667766666656667777764 25667889999999
Q ss_pred ecceeeecC---CCCceeEEEEEEEeeeCCCCeEEEEEEEecCCCC--cccccchhhhhhhhhhhhHHhHHHHHHH
Q 039074 294 QNNRELVDS---KTGEKHYFTGLFLCRPTGQGKSMLIVRFGATKRS--PLAKLFPKWYFHQNASKVFEQDMGFLSS 364 (534)
Q Consensus 294 ~~~~~~~~~---~~G~~~~~~~v~~~~Pv~pg~trl~~~~~~~~~~--~~~~~~p~w~~h~~~~~Vl~eD~~iL~~ 364 (534)
.+++.+.+. .+|..+++..+++|+|.+||+||+++|+..+|.. .+.+.+|.-+...+.++||.||+.++.+
T Consensus 296 ~s~i~l~~~~g~~~~~~~~l~qlhvclP~~~G~tRll~R~~~dF~~~~~~~~~~~~~~w~~~a~~vl~e~l~~v~~ 371 (394)
T PLN00095 296 ASTIALEDGPGGGDGTDMNVEQLHVCLPAKPGLCRLLFRLAFDFVAVPEGAQAAAGDVWANLAMMVLKEELEDVRA 371 (394)
T ss_pred eeeecccccCCCCccccceeeeEEEEEecCCCceEEEEeecccccccHHHhHhchHHHHHHHHHHHHHHHHHHHhc
Confidence 998887531 1222457788999999999999999999998853 3344455433445789999999988864
No 4
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=100.00 E-value=3e-43 Score=370.42 Aligned_cols=328 Identities=21% Similarity=0.375 Sum_probs=227.2
Q ss_pred ccCCCCcccccccccccccccccCcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccc
Q 039074 59 LVGPASAEERRGERQVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLID 138 (534)
Q Consensus 59 ~~p~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~ 138 (534)
.++...|++++.++.|...+|.++||+|++++||+++++++++++|+++||||++||+|+||+|.|||||++||+|++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~~dg~~~al~d~C~HRga~Ls~g~~~~ 83 (367)
T COG4638 4 RLPPPFYTDPELFQLELERIFYKHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKDGQVHALADVCPHRGARLSEGRVGG 83 (367)
T ss_pred cCCCccccCHHHHHHHHHHhhhhCEEEEccHHHCCCCCceeEEEcCeEEEEEECCCCCEEEEeccCCCCCchhccccCCC
Confidence 56889999999999999999999999999999999988899999999999999999999999999999999999999987
Q ss_pred -cEEEccCCCeEEecCCceeecCCCCCCCCCC-ccCccceEEEEEecCeEEEEcCCCCCCCC-CCCCccc-cccCCCcee
Q 039074 139 -GRLECLYHGWQFEGEGKCVKIPQLPADAKIP-RSACVRTYEVKESQGVVWVWMSQKTPPNP-DKLPWFE-NFARPGFQD 214 (534)
Q Consensus 139 -~~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~-~~~~l~~~pv~~~~G~Vwv~~~~~~~~~~-~~lP~~~-~~~~~~~~~ 214 (534)
+.|+||||||+||++|+|+.+|+......++ ++.++++|||++++|+||||+++++++.. ...|..+ +.++.....
T Consensus 84 ~~~l~CpyHgW~y~~~G~~~~ip~~~~~~~~~~~~~~l~~~~~~~~~G~Iwi~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 163 (367)
T COG4638 84 KGRLTCPYHGWTYDLDGRLRGVPARGYPLDFDKSEHGLKRYPVEERYGFIWIWLGDPPPAAEAFLPPAEPYEDDRSRLGG 163 (367)
T ss_pred CceEecCCCceEECCCCcEecCCccccCCCCCHhhCCccccceEEEccEEEEecCCCccChhHhcccccccccccccccC
Confidence 8999999999999999999999543333444 45789999999999999999998776522 2334444 433322222
Q ss_pred eeeEEEeecChhhhcccCCC-CccCccccCCcccccccccCCCceEEEEee--------ccCcccc------c--cCCCC
Q 039074 215 VSTIHELPYDHSILLENLMD-PAHIPISHDRTDWTAKREDAQPLGFEVTER--------TDRGFAG------R--WGKEK 277 (534)
Q Consensus 215 ~~~~~~~~~~~~~~~EN~lD-~~H~~~~H~~~~~~~~r~~~~p~~~~v~~~--------~~~gf~~------~--~~~~~ 277 (534)
.....++++|||+++||++| +||++++|+++.+........ .+.++.. ....+.. . .....
T Consensus 164 ~~~~~~~~~nwk~~vEn~~d~~~H~~~vH~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~ 241 (367)
T COG4638 164 GSFTINVPGNWKLAVENNLDDPYHVPFVHPGLLGTEPHTEVG--AYDVTAGGHWDVILATGNPFFQPLGSEASSYGFDGN 241 (367)
T ss_pred ceEEEEecccceEEeeccCCccccccccCHHHhccccccccc--ccccccCCceeeeeccCCCccCCcchhhhccccccc
Confidence 34567899999999998888 999999999876443322111 1111111 0000000 0 00000
Q ss_pred --CCCCCeEEEEecCee-eecceeeecCCCCceeEEEEEEEeeeCCCCeEEEEEEEecCCC-Ccccccchhhhhhhhhhh
Q 039074 278 --DEPLPNFLRFEAPCV-LQNNRELVDSKTGEKHYFTGLFLCRPTGQGKSMLIVRFGATKR-SPLAKLFPKWYFHQNASK 353 (534)
Q Consensus 278 --~~~~~~~~~F~~P~~-~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trl~~~~~~~~~-~~~~~~~p~w~~h~~~~~ 353 (534)
.........|..|+. ..+... .+ ...++...|+++++|.+......... ....+....+ .....+.
T Consensus 242 ~~~~~~~~~~~~~~p~~~~~~~~~-----~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 311 (367)
T COG4638 242 YEVHVPGAYLLFLYPNSTVWNHVT-----VD----DVIVFFVQPIDEDETMVTLVWLVLPDLVEGVDYFDKL-IRRFRQE 311 (367)
T ss_pred cccccCceeEEEEcCCchheeeec-----cc----ceeEEEEEecCCceeEEEeeeeeccchhhHHHHHHHH-HHHHhcc
Confidence 012234677777873 332221 11 12344557999999987555322211 1111111112 2234456
Q ss_pred hHHhHHHHHHHHHHhhhhcCCCccccccccCcCcHHHHHHHHHHHHhC
Q 039074 354 VFEQDMGFLSSQNEVLMKETVPTKELYLNLRSSDTWVAEYRKWMDKVG 401 (534)
Q Consensus 354 Vl~eD~~iL~~Qe~~l~~~~~~~k~~y~~~~~aD~~ViafRrWl~~~~ 401 (534)
+++||..|+|.|++.+.+.... ...+ +...|...+++|+|+.+..
T Consensus 312 ~~~qD~~i~e~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~ 356 (367)
T COG4638 312 ILDQDREILENQQPGRLSPALE-RGPY--PIREDAGSVQFRRWLAERL 356 (367)
T ss_pred CcHHHHHHHHHHhccccccccc-CCCc--cccccchhhHHHHHHHHHH
Confidence 9999999999999965543321 1223 2446899999999998764
No 5
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=100.00 E-value=1e-36 Score=324.06 Aligned_cols=192 Identities=16% Similarity=0.238 Sum_probs=157.3
Q ss_pred CCccccCCCCcccccccccccccccccCcEEeeecCCCCCCCc-EEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCcccc
Q 039074 55 DHKVLVGPASAEERRGERQVADYDWTEEWYPLYLTKDVPDDAP-LGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSE 133 (534)
Q Consensus 55 ~~~~~~p~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~~~~-~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~ 133 (534)
+....+|.+.|+|+++++.|.+.+|.+.|+.||+.+||++++. +++.+.|++|+|+|+++|+++||.|+|||||++|+.
T Consensus 11 ~~~~~~~~~~Ytd~~~f~~E~~~IF~~~W~~v~~~selp~~gd~~t~~~~~~~vvv~R~~dG~i~af~N~C~HRga~L~~ 90 (433)
T TIGR03229 11 KGIFRCKREMFTDPELFDLEMKHIFEGNWIYLAHESQIPNNNDYYTTYMGRQPIFIARNKDGELNAFINACSHRGAMLCR 90 (433)
T ss_pred cCCccCChhhcCCHHHHHHHHHHHhhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCcEEEEeCcCCCCCCCccc
Confidence 3445789999999999999999999999999999999998876 668899999999999999999999999999999998
Q ss_pred Ccc-cccEEEccCCCeEEecCCceeecCCCCCC---CCCCc--cCccceEE-EEEecCeEEEEcCCCCCCCCCCCCcc--
Q 039074 134 GQL-IDGRLECLYHGWQFEGEGKCVKIPQLPAD---AKIPR--SACVRTYE-VKESQGVVWVWMSQKTPPNPDKLPWF-- 204 (534)
Q Consensus 134 G~i-~~~~l~CpyHGW~Fd~~G~c~~iP~~~~~---~~~~~--~~~l~~~p-v~~~~G~Vwv~~~~~~~~~~~~lP~~-- 204 (534)
|.. +.+.|+||||||+||.||+|+.+|..... ..+++ ..+|+.++ ++.++|+|||++++++++..+.+..+
T Consensus 91 ~~~g~~~~~~CPyHgW~f~~~G~l~~vP~~~~~~~~~~fd~~~~~~L~~v~rve~y~GfIFv~l~~~~~~l~e~Lg~~~~ 170 (433)
T TIGR03229 91 HKRGNKTTYTCPFHGWTFNNSGKLLKVKDPEDAGYPECFNKDGSHDLKKVARFESYRGFLFGSLNPDVLPLEEHLGETAK 170 (433)
T ss_pred ccccCCCEEEcCCCCCEecCCcceEeCCCcccccCccccCcHhhcCCccceEEEEECCEEEEEcCCCCCCHHHHhhhHHH
Confidence 865 56799999999999999999999974321 12332 45799996 66679999999998776665555432
Q ss_pred --ccccC---CCceeee--eEEEeecChhhhcccCCCCccCccccCCcc
Q 039074 205 --ENFAR---PGFQDVS--TIHELPYDHSILLENLMDPAHIPISHDRTD 246 (534)
Q Consensus 205 --~~~~~---~~~~~~~--~~~~~~~~~~~~~EN~lD~~H~~~~H~~~~ 246 (534)
+.+.+ .++..+. ...++++|||+++||++|.||++++|.++.
T Consensus 171 ~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~ 219 (433)
T TIGR03229 171 IIDMIVDQSPDGLEVLRGSSTYTYEGNWKLQAENGADGYHVSAVHWNYA 219 (433)
T ss_pred HHHHHhhcCcCCCeEEeeeEEEEecCchhhhHHhccCcccchhhcccHH
Confidence 21211 2333332 356789999999999999999999998764
No 6
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=100.00 E-value=5.4e-35 Score=310.70 Aligned_cols=193 Identities=17% Similarity=0.284 Sum_probs=157.1
Q ss_pred CCCccccCCCCcccccccccccccccccCcEEeeecCCCCCCC-cEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccc
Q 039074 54 GDHKVLVGPASAEERRGERQVADYDWTEEWYPLYLTKDVPDDA-PLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLS 132 (534)
Q Consensus 54 ~~~~~~~p~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~~~-~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls 132 (534)
.+....++.+.|+|+++|+.|.+.+|.+.|+.||+.+||++.+ .+++++++++|||+|+++|+++||.|+|||||++|+
T Consensus 10 ~~~~~~v~~~~ytd~~if~~E~~~IF~~~W~~v~h~selp~~GDy~t~~ig~~pviv~R~~dG~i~a~~N~C~HRGa~L~ 89 (438)
T TIGR03228 10 NDGVFRIARDMFTEPELFDLEMELIFEKNWIYACHESELPNNHDFVTVRAGRQPMIVTRDGKGELHALVNACQHRGATLT 89 (438)
T ss_pred ccCceecChheECCHHHHHHHHHHHHhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEcccCCCCCCccc
Confidence 3455578999999999999999999999999999999999865 488999999999999999999999999999999999
Q ss_pred c-CcccccEEEccCCCeEEecCCceeecCCCCCC-CCCC-ccCccceEEEEEecCeEEEEcCCCC-CCCCCCCCc----c
Q 039074 133 E-GQLIDGRLECLYHGWQFEGEGKCVKIPQLPAD-AKIP-RSACVRTYEVKESQGVVWVWMSQKT-PPNPDKLPW----F 204 (534)
Q Consensus 133 ~-G~i~~~~l~CpyHGW~Fd~~G~c~~iP~~~~~-~~~~-~~~~l~~~pv~~~~G~Vwv~~~~~~-~~~~~~lP~----~ 204 (534)
. +.++...++||||||+||.||+|+.||..... ..++ ...+|+.++|.+.+|+||+++++++ ++..+.+.. +
T Consensus 90 ~~~~Gn~~~~~CPYHgW~y~~dG~L~~vp~~~~y~~~fd~~~~~L~~~rv~~y~GfIFv~l~~~a~~~l~e~lg~~~~~l 169 (438)
T TIGR03228 90 RVGKGNQSTFTCPFHAWCYKSDGRLVKVKAPGEYCEGFDKATRGLKKARIASYRGFVFVSLDVAATDSLEDFLGDARVFL 169 (438)
T ss_pred cCCccccCEEEcCCCCCcccCCCceeecCcccccCCCCChhhCCCcceeEEEECCEEEEEeCCCCCCCHHHHhhhHHHHH
Confidence 6 77777899999999999999999999954221 1233 3456888999999999999999875 333344321 2
Q ss_pred ccccC--C--Cceeee--eEEEeecChhhhcccCCCCccCccccCCcc
Q 039074 205 ENFAR--P--GFQDVS--TIHELPYDHSILLENLMDPAHIPISHDRTD 246 (534)
Q Consensus 205 ~~~~~--~--~~~~~~--~~~~~~~~~~~~~EN~lD~~H~~~~H~~~~ 246 (534)
+.+.+ + ++..+. ....+++|||+.+||++|+||++++|..+.
T Consensus 170 d~~~~~~~~g~le~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~ 217 (438)
T TIGR03228 170 DMMVAQSPTGELEVLPGKSAYTYAGNWKLQNENGLDGYHVSTVHYNYV 217 (438)
T ss_pred HHHhhccCcCceEEecceEEEEeCCchHHHHHhccccccchhhChhhH
Confidence 22211 1 244332 245799999999999999999999998764
No 7
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=100.00 E-value=7.7e-33 Score=251.00 Aligned_cols=126 Identities=77% Similarity=1.510 Sum_probs=114.7
Q ss_pred ccccccccccCcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEe
Q 039074 72 RQVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFE 151 (534)
Q Consensus 72 ~~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd 151 (534)
+...+++|++.|++|+.++||++++++.++++|++|+|+|+.+|+++||+|+|||||++|++|.++++.|+||||||+||
T Consensus 7 ~~~~~~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~Fd 86 (134)
T cd04338 7 ENVAEYDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQFG 86 (134)
T ss_pred CcccccccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCeecCCEEEccCCCCEEC
Confidence 34467899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred cCCceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCCC
Q 039074 152 GEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPN 197 (534)
Q Consensus 152 ~~G~c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~~~~ 197 (534)
.+|+|+.+|+.+....++...++++|||++++|+|||++++.++++
T Consensus 87 ~~G~~~~~P~~~~~~~~~~~~~l~~y~v~~~~G~V~V~~~~~~~~~ 132 (134)
T cd04338 87 GEGKCVKIPQLPADAKIPKNACVKSYEVRDSQGVVWMWMSEATPPD 132 (134)
T ss_pred CCCCEEECCCCCccCCCCcccCcceEeEEEECCEEEEEcCCCCCCC
Confidence 9999999998765555666678999999999999999998765543
No 8
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.97 E-value=1.4e-31 Score=238.61 Aligned_cols=113 Identities=31% Similarity=0.709 Sum_probs=102.9
Q ss_pred cCcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEecCCceeecC
Q 039074 81 EEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIP 160 (534)
Q Consensus 81 ~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~~G~c~~iP 160 (534)
+.||+|+.++||+ ++++.++++|+++||||+.+|+++|++|+||||+++|++|+++++.|+||||||+||.+|+|+.||
T Consensus 2 ~~W~~v~~~~~l~-~~~~~~~~~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd~~G~~~~iP 80 (123)
T cd03537 2 ASWYVAMRSDDLK-DKPTELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYDEQGQCVHIP 80 (123)
T ss_pred CcEEEEEEHHHcC-CCcEEEEECCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEEeCCEEECCCCCCEECCCCCEEECC
Confidence 5799999999996 578999999999999999899999999999999999999999999999999999999999999999
Q ss_pred CCCCC----CCCCccCccceEEEEEecCeEEEEcCCCC
Q 039074 161 QLPAD----AKIPRSACVRTYEVKESQGVVWVWMSQKT 194 (534)
Q Consensus 161 ~~~~~----~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~ 194 (534)
+.+.. ..++++.++++|||+|++|+||||++++.
T Consensus 81 ~~~~~~~~~~~~p~~~~~~~~pv~e~~G~Vwv~~g~~~ 118 (123)
T cd03537 81 GHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGSPQ 118 (123)
T ss_pred CCcccccccccCCcccccccEeEEEECCEEEEEcCCCC
Confidence 86542 23456788999999999999999998654
No 9
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.97 E-value=1.2e-30 Score=237.74 Aligned_cols=129 Identities=36% Similarity=0.834 Sum_probs=113.4
Q ss_pred ccccccccccccccCcEEeeecCCCCCCCcEEEEEcCEEEEEEEec-CCcEEEEeCCCCCCCCccccCccc-ccEEEccC
Q 039074 68 RRGERQVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDG-NGELRCYQDRCPHRLAKLSEGQLI-DGRLECLY 145 (534)
Q Consensus 68 ~~~~~~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~-~G~~~a~~d~CpHRga~Ls~G~i~-~~~l~Cpy 145 (534)
++......++.|++.|++|+.++||++++.+.++++|++|+|+|+. +|+++||+|+|||||++|++|.+. ++.|+|||
T Consensus 3 ~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~ 82 (138)
T cd03480 3 PAGGSDSDKFDWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPY 82 (138)
T ss_pred CCCCcccccCCCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCC
Confidence 3455667788999999999999999998899999999999999986 999999999999999999999985 67999999
Q ss_pred CCeEEecCCceeecCCCCCCCC--CCccCccceEEEEEecCeEEEEcCCCCCC
Q 039074 146 HGWQFEGEGKCVKIPQLPADAK--IPRSACVRTYEVKESQGVVWVWMSQKTPP 196 (534)
Q Consensus 146 HGW~Fd~~G~c~~iP~~~~~~~--~~~~~~l~~~pv~~~~G~Vwv~~~~~~~~ 196 (534)
|||+||.+|+|+.+|.....+. .+...++++|||++++|+|||+++++.++
T Consensus 83 Hgw~Fd~tG~~~~~P~~~~~g~~~~~~~~~l~~ypv~v~~g~V~V~~~~~~~~ 135 (138)
T cd03480 83 HGWSFDGSGSCQRIPQAAEGGKAHTSPRACVASLPTAVRQGLLFVWPGEPENA 135 (138)
T ss_pred CCCEECCCCCEEECCCCccccccCCCcccccceEeEEEECCEEEEecCChHhc
Confidence 9999999999999998654332 23357899999999999999999876544
No 10
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.97 E-value=9e-31 Score=241.70 Aligned_cols=137 Identities=21% Similarity=0.384 Sum_probs=120.7
Q ss_pred cCCCCcccccccccccccccc-cCcEEeeecCCCCC-CCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcc-
Q 039074 60 VGPASAEERRGERQVADYDWT-EEWYPLYLTKDVPD-DAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQL- 136 (534)
Q Consensus 60 ~p~~~y~~~~~~~~e~~~~~~-~~W~~v~~~~dl~~-~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i- 136 (534)
+|.+.|+|++.++.|.+.+|+ +.|++|++++||++ +....+.+.|++|+|+|+.+|+++|++|+|||||++|++|..
T Consensus 2 ~~~~~y~d~~~~~~E~~~if~~~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~~~g~v~A~~n~CpHrg~~L~~g~~g 81 (150)
T cd03545 2 VPYKVFTDRAYFDREQERIFRGKTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRAEDGSLHAWVNRCAHRGALVCRERRG 81 (150)
T ss_pred CChhhccCHHHHHHHHHhhhCCCceEEEEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEcccCcCCCCEecccccC
Confidence 578999999999999999998 99999999999985 566788899999999998899999999999999999998854
Q ss_pred cccEEEccCCCeEEecCCceeecCCCCCCC-------CCC-ccCccceEEEEEecCeEEEEcCCCCCC
Q 039074 137 IDGRLECLYHGWQFEGEGKCVKIPQLPADA-------KIP-RSACVRTYEVKESQGVVWVWMSQKTPP 196 (534)
Q Consensus 137 ~~~~l~CpyHGW~Fd~~G~c~~iP~~~~~~-------~~~-~~~~l~~~pv~~~~G~Vwv~~~~~~~~ 196 (534)
+++.|+||||||+||++|+|+.+|+..... .++ +..+|++|+|.+++|+|||+++++++|
T Consensus 82 ~~~~i~CP~Hgw~Fdl~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~~~~~p 149 (150)
T cd03545 82 NDGSLTCVYHQWAYDLKGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFSDEVEP 149 (150)
T ss_pred CCCEEECCCCCCEECCCCCEEECccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeCCCCCC
Confidence 578999999999999999999999864321 133 356799999999999999999976543
No 11
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.96 E-value=1.3e-29 Score=228.41 Aligned_cols=116 Identities=33% Similarity=0.805 Sum_probs=105.8
Q ss_pred ccccccccCcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEecC
Q 039074 74 VADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGE 153 (534)
Q Consensus 74 e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~~ 153 (534)
+....|++.||+|+.++||++++.+.++++|++++|+|+.+|+++|++|+|||||++|++|.++++.|+||||||+||.+
T Consensus 9 ~~~~~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hgw~Fd~t 88 (129)
T cd04337 9 ELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKVIEGRIQCPYHGWEYDGD 88 (129)
T ss_pred cccchhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcEeCCEEEeCCCCCEECCC
Confidence 34567899999999999999888899999999999999989999999999999999999999999999999999999999
Q ss_pred CceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCC
Q 039074 154 GKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKT 194 (534)
Q Consensus 154 G~c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~ 194 (534)
|+|+.+|..+ +...++++||+++++|+||||++++.
T Consensus 89 G~~~~~P~~~-----~~~~~l~~y~v~v~~g~V~V~~~~~~ 124 (129)
T cd04337 89 GECTKMPSTK-----CLNVGIAALPCMEQDGMIWVWPGDDP 124 (129)
T ss_pred CCEEeCCcCC-----CccCCcceEeEEEECCEEEEEcCCCC
Confidence 9999999643 23467999999999999999998653
No 12
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.96 E-value=1.6e-29 Score=232.05 Aligned_cols=119 Identities=29% Similarity=0.720 Sum_probs=108.1
Q ss_pred cccccccCcEEeeecCCCC-CCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEecC
Q 039074 75 ADYDWTEEWYPLYLTKDVP-DDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGE 153 (534)
Q Consensus 75 ~~~~~~~~W~~v~~~~dl~-~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~~ 153 (534)
.+.+|++.|++|+.++||+ ++..+.+++.|++|+|+|+.+|+++|++|+|||||++|+.|.+.++.|+||||||+||.+
T Consensus 14 ~~~~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~~~~~i~CP~Hgw~F~~~ 93 (144)
T cd03479 14 MGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRVEECGLRCCYHGWKFDVD 93 (144)
T ss_pred hhhHhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcccCCEEEccCCCcEECCC
Confidence 4678999999999999999 577899999999999999989999999999999999999999999999999999999999
Q ss_pred CceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCC
Q 039074 154 GKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQK 193 (534)
Q Consensus 154 G~c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~ 193 (534)
|+|+.+|..+....++...++++|+|++++|+|||++++.
T Consensus 94 G~~~~~P~~~~~~~~~~~~~l~~~~v~~~~G~I~V~~~~~ 133 (144)
T cd03479 94 GQCLEMPSEPPDSQLKQKVRQPAYPVRERGGLVWAYMGPA 133 (144)
T ss_pred CCEEECCCCccccCCccccCcceEeEEEECCEEEEECCCC
Confidence 9999999865444444567899999999999999999753
No 13
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.96 E-value=3e-29 Score=221.69 Aligned_cols=112 Identities=29% Similarity=0.700 Sum_probs=103.0
Q ss_pred CcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEecCCceeecCC
Q 039074 82 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQ 161 (534)
Q Consensus 82 ~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~~G~c~~iP~ 161 (534)
.||+|+.++||++++++.++++|++|+|||+.+|+++|++|+|||||++|++|.++++.|+||||||+||.+|+|+.+|.
T Consensus 1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~~G~~~~~p~ 80 (115)
T cd03531 1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGGDGRCKAIPY 80 (115)
T ss_pred CcEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcccCCEEECCCCCCEECCCCCEEECCc
Confidence 49999999999998899999999999999998999999999999999999999999999999999999999999999996
Q ss_pred CCCCCCCCccCccceEEEEEecCeEEEEcCCCCCC
Q 039074 162 LPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPP 196 (534)
Q Consensus 162 ~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~~~ 196 (534)
.. .++....+++|||++++|+|||+++++..+
T Consensus 81 ~~---~~p~~~~l~~ypv~~~~g~v~v~~~~~~~~ 112 (115)
T cd03531 81 AR---RVPPLARTRAWPTLERNGQLFVWHDPEGNP 112 (115)
T ss_pred cc---CCCcccccceEeEEEECCEEEEECCCCCCC
Confidence 43 234567799999999999999999977643
No 14
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.96 E-value=8.9e-29 Score=225.04 Aligned_cols=120 Identities=28% Similarity=0.678 Sum_probs=104.3
Q ss_pred cccccccCcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCc--ccccEEEccCCCeEEec
Q 039074 75 ADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQ--LIDGRLECLYHGWQFEG 152 (534)
Q Consensus 75 ~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~--i~~~~l~CpyHGW~Fd~ 152 (534)
.++.|++.|++|+.++||++++++.++++|++|+|+| .+|+++|++|+|||||++|++|. ++++.|+||||||+||+
T Consensus 7 ~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r-~~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl 85 (136)
T cd03548 7 AKWGFRNHWYPALFSHELEEGEPKGIQLCGEPILLRR-VDGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRL 85 (136)
T ss_pred cccCcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEe-cCCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEeC
Confidence 3458999999999999999988999999999999999 48999999999999999999986 45789999999999997
Q ss_pred -CCceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCC
Q 039074 153 -EGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPP 196 (534)
Q Consensus 153 -~G~c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~~~ 196 (534)
+|+|+.+|..+.. ..+...++++|||++++|+|||++++...+
T Consensus 86 ~tG~~~~~~~~p~~-~~~~~~~L~~ypv~~~~g~V~v~~~~~~~~ 129 (136)
T cd03548 86 DDGKLVTILANPDD-PLIGRTGLKTYPVEEAKGMIFVFVGDGDYA 129 (136)
T ss_pred CCccEEEcccCCCc-cccccCCCceEeEEEECCEEEEEeCCcccC
Confidence 8999999865432 223356799999999999999999875443
No 15
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.96 E-value=9.5e-29 Score=218.84 Aligned_cols=112 Identities=38% Similarity=0.871 Sum_probs=102.8
Q ss_pred cccCcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEecCCceee
Q 039074 79 WTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVK 158 (534)
Q Consensus 79 ~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~~G~c~~ 158 (534)
+++.|++|+.++||+ +++..+++.|++++|+|+.+|+++|++|+|||||++|++|.++++.|+||||||+||.+|+|+.
T Consensus 2 ~~~~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd~~G~~~~ 80 (116)
T cd03532 2 PRNAWYVAAWADELG-DKPLARTLLGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFDSDGRCVH 80 (116)
T ss_pred cCCcEEEEEEHHHcC-CCcEEEEECCceEEEEECCCCCEEEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEcCCCCEEe
Confidence 578999999999998 7889999999999999998999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCC
Q 039074 159 IPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKT 194 (534)
Q Consensus 159 iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~ 194 (534)
+|..+. .+...++++|||++++|+|||++++++
T Consensus 81 ~p~~~~---~~~~~~l~~~~v~~~~g~v~v~~~~~~ 113 (116)
T cd03532 81 MPGQER---VPAKACVRSYPVVERDALIWIWMGDAA 113 (116)
T ss_pred CCCCCC---CCCccccccCCEEEECCEEEEEcCCcc
Confidence 997532 345678999999999999999998654
No 16
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.95 E-value=1.2e-28 Score=226.51 Aligned_cols=133 Identities=20% Similarity=0.356 Sum_probs=115.8
Q ss_pred CCcccccccccccccccccCcEEeeecCCCCC-CCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCcccc-Cccc-cc
Q 039074 63 ASAEERRGERQVADYDWTEEWYPLYLTKDVPD-DAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSE-GQLI-DG 139 (534)
Q Consensus 63 ~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~-G~i~-~~ 139 (534)
+.|+++++++.|.+.+|.+.|++|++++||++ +....+++.|++|+|+|+.+|+++|+.|+|||||++|+. |... ++
T Consensus 3 ~~y~~~~~~~~e~~~i~~~~W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~~~g~v~A~~n~CpHrg~~L~~~~~g~~~~ 82 (146)
T cd03538 3 DVYTDPEIFALEMERLFGNAWIYVGHESQVPNPGDYITTRIGDQPVVMVRHTDGSVHVLYNRCPHKGTKIVSDGCGNTGK 82 (146)
T ss_pred ceEcCHHHHHHHHHHHhhcCCEEEEEHHHCCCCCCEEEEEECCeeEEEEECCCCCEEEEeccCcCCCCEeecccccccCC
Confidence 67999999999999999999999999999984 557899999999999999899999999999999999974 4454 56
Q ss_pred EEEccCCCeEEecCCceeecCCCCCCC--CCC---ccCccceE-EEEEecCeEEEEcCCCCC
Q 039074 140 RLECLYHGWQFEGEGKCVKIPQLPADA--KIP---RSACVRTY-EVKESQGVVWVWMSQKTP 195 (534)
Q Consensus 140 ~l~CpyHGW~Fd~~G~c~~iP~~~~~~--~~~---~~~~l~~~-pv~~~~G~Vwv~~~~~~~ 195 (534)
.|+||||||+||.||+|+.+|...... .++ ...+|+.+ .|++++|+|||+++++++
T Consensus 83 ~i~CP~Hgw~Fd~~G~~~~~p~~~~~~~~~~~~~~~~~~L~~~~~v~~~~g~ifv~~~~~~~ 144 (146)
T cd03538 83 FFRCPYHAWSFKTDGSLLAIPLKKGYEGTGFDPSHADKGMQRVGAVDIYRGFVFARLSPSGP 144 (146)
T ss_pred EEECCCCCCEECCCCCEEECCchhcCCcccCCcchhhCCCCcceeEEEECCEEEEEcCCCCC
Confidence 899999999999999999999765433 222 25679999 799999999999997643
No 17
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.95 E-value=2.5e-27 Score=209.95 Aligned_cols=112 Identities=21% Similarity=0.378 Sum_probs=102.2
Q ss_pred CcEEeeecCCCCCCCc-EEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEecCCceeecC
Q 039074 82 EWYPLYLTKDVPDDAP-LGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIP 160 (534)
Q Consensus 82 ~W~~v~~~~dl~~~~~-~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~~G~c~~iP 160 (534)
.|++|++++||++++. ++++++|++|+|+|+.+|+++||.|+|||||++|++|.++++.|+||||||+||.+|+|+.+|
T Consensus 1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l~G~l~~~P 80 (118)
T cd03541 1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLTKAT 80 (118)
T ss_pred CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcCCCeEEeCC
Confidence 4999999999998775 688999999999999899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCc-cCccceEEEEEecCeEEEEcCCC
Q 039074 161 QLPADAKIPR-SACVRTYEVKESQGVVWVWMSQK 193 (534)
Q Consensus 161 ~~~~~~~~~~-~~~l~~~pv~~~~G~Vwv~~~~~ 193 (534)
.......+++ ..+|+.++|.+++|+|||+++++
T Consensus 81 ~~~~~~~~~~~~~~L~~~~~~~~~g~vfv~~~~~ 114 (118)
T cd03541 81 QATGIQNFNPKELGLVPLKVAEWGPFVLISVDRS 114 (118)
T ss_pred CcccccCCCHHHCCCceEeEEEECCEEEEEeCCC
Confidence 8765555553 56799999999999999999864
No 18
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.95 E-value=2e-27 Score=213.83 Aligned_cols=120 Identities=17% Similarity=0.422 Sum_probs=103.2
Q ss_pred ccccccCcEEeeecCCCCCCCc-EEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCccc-ccEEEccCCCeEEecC
Q 039074 76 DYDWTEEWYPLYLTKDVPDDAP-LGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLI-DGRLECLYHGWQFEGE 153 (534)
Q Consensus 76 ~~~~~~~W~~v~~~~dl~~~~~-~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~-~~~l~CpyHGW~Fd~~ 153 (534)
+.+|.+.|++|++++||++++. ..+++.|++|+|+|+.+|+++|++|+|||||++|++|... ++.|+||||||+||.|
T Consensus 2 ~~i~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~~ 81 (128)
T cd03472 2 ERVFARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDTA 81 (128)
T ss_pred cchhhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECCC
Confidence 4578999999999999998666 5677899999999998999999999999999999998764 4689999999999999
Q ss_pred CceeecCCCCCCC--CCC-ccCccceEEEEEecCeEEEEcCCCCC
Q 039074 154 GKCVKIPQLPADA--KIP-RSACVRTYEVKESQGVVWVWMSQKTP 195 (534)
Q Consensus 154 G~c~~iP~~~~~~--~~~-~~~~l~~~pv~~~~G~Vwv~~~~~~~ 195 (534)
|+|+.+|+.+... .++ ....++.++|.+++|+|||+++++++
T Consensus 82 G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~g~vfv~~~~~~~ 126 (128)
T cd03472 82 GNLVNVPFEKEAFCDGLDKADWGPLQARVETYKGLIFANWDAEAP 126 (128)
T ss_pred cCEEeccCcccccccCCCHHHCCCcceeEeEECCEEEEEcCCCCC
Confidence 9999999865432 233 23468899999999999999997754
No 19
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.94 E-value=3.5e-27 Score=212.49 Aligned_cols=114 Identities=16% Similarity=0.381 Sum_probs=97.7
Q ss_pred cEEeeecCCCCCCCc-EEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCccc-ccEEEccCCCeEEecCCceeecC
Q 039074 83 WYPLYLTKDVPDDAP-LGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLI-DGRLECLYHGWQFEGEGKCVKIP 160 (534)
Q Consensus 83 W~~v~~~~dl~~~~~-~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~-~~~l~CpyHGW~Fd~~G~c~~iP 160 (534)
|++|++++||++.+. ..+.+.+++|+|+|+.+|+++||.|+|||||++|++|... .+.|+||||||+||++|+|+.+|
T Consensus 1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~p 80 (129)
T cd03539 1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRDPDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGVP 80 (129)
T ss_pred CEEEEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeecc
Confidence 999999999987554 6777888999999998999999999999999999998764 56899999999999999999999
Q ss_pred CCCCC-----------CCCC-ccCccceEEEEEecCeEEEEcCCCCCC
Q 039074 161 QLPAD-----------AKIP-RSACVRTYEVKESQGVVWVWMSQKTPP 196 (534)
Q Consensus 161 ~~~~~-----------~~~~-~~~~l~~~pv~~~~G~Vwv~~~~~~~~ 196 (534)
+.... ..++ ...+|++|+|++++|+|||++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~~ 128 (129)
T cd03539 81 FRRGVKKDGKVNGGMPKDFKTKDHGLTKLKVATRGGVVFASFDHDVES 128 (129)
T ss_pred ccccccccccccccccCCcChHHCCCceeeEeEECCEEEEEeCCCCCC
Confidence 86432 1122 346799999999999999999976543
No 20
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.94 E-value=1.1e-26 Score=205.67 Aligned_cols=113 Identities=33% Similarity=0.637 Sum_probs=101.0
Q ss_pred cEEeeecCCCC-CCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcc-cccEEEccCCCeEEecCCceeecC
Q 039074 83 WYPLYLTKDVP-DDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQL-IDGRLECLYHGWQFEGEGKCVKIP 160 (534)
Q Consensus 83 W~~v~~~~dl~-~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i-~~~~l~CpyHGW~Fd~~G~c~~iP 160 (534)
||+|+.++||+ +++.+.+++.|++++|+|+.+|+++|++|+|||+|++|+.|.+ +++.|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~P 80 (118)
T cd03469 1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVP 80 (118)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCccEEEEECCCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeCC
Confidence 99999999999 8888999999999999999899999999999999999999999 789999999999999999999999
Q ss_pred CCCCCCC-CCccCccceEEEEEecCeEEEEcCCCCC
Q 039074 161 QLPADAK-IPRSACVRTYEVKESQGVVWVWMSQKTP 195 (534)
Q Consensus 161 ~~~~~~~-~~~~~~l~~~pv~~~~G~Vwv~~~~~~~ 195 (534)
..+.... .++..+|++|||++++|+|||+++++.+
T Consensus 81 ~~~~~~~~~~~~~~L~~~~v~~~~g~v~v~~~~~~~ 116 (118)
T cd03469 81 REEGFPGFDKEKLGLRTVPVEEWGGLIFVNLDPDAP 116 (118)
T ss_pred cccccCCCCHHHCCCeEEEEEEECCEEEEEcCCCCC
Confidence 7543221 2345679999999999999999987543
No 21
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.93 E-value=5.7e-26 Score=203.11 Aligned_cols=115 Identities=20% Similarity=0.472 Sum_probs=97.5
Q ss_pred cCcEEeeecCCCCCCCc-EEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccc-cEEEccCCCeEEecCCceee
Q 039074 81 EEWYPLYLTKDVPDDAP-LGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVK 158 (534)
Q Consensus 81 ~~W~~v~~~~dl~~~~~-~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~-~~l~CpyHGW~Fd~~G~c~~ 158 (534)
+.|++|++++||++++. ..+.+.|++++|+|+.+|+++|++|+|||||++|++|.+.+ +.|+||||||+||.||+|+.
T Consensus 1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~~ 80 (123)
T cd03535 1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRDEDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLVG 80 (123)
T ss_pred CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEECCCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEee
Confidence 47999999999998665 44568899999999889999999999999999999998864 68999999999999999999
Q ss_pred cCCCCCCC--CCC-ccCccceEEE-EEecCeEEEEcCCCCC
Q 039074 159 IPQLPADA--KIP-RSACVRTYEV-KESQGVVWVWMSQKTP 195 (534)
Q Consensus 159 iP~~~~~~--~~~-~~~~l~~~pv-~~~~G~Vwv~~~~~~~ 195 (534)
+|...... .++ ...+|++|++ ++++|+|||+++++.+
T Consensus 81 ~p~~~~~~~~~~~~~~~~L~~~~~~e~~~g~vfv~l~~~~~ 121 (123)
T cd03535 81 VPAQQEAYGGGFDKSQWGLRPAPNLDSYNGLIFGSLDPKAP 121 (123)
T ss_pred CCCcccccccCcCHHHCCCccceeEEEECCEEEEEeCCCCC
Confidence 99765331 233 3467999985 5589999999997644
No 22
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.93 E-value=1.3e-25 Score=200.84 Aligned_cols=114 Identities=19% Similarity=0.389 Sum_probs=97.3
Q ss_pred cEEeeecCCCCCCCc-EEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccc-cEEEccCCCeEEecCCceeecC
Q 039074 83 WYPLYLTKDVPDDAP-LGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKIP 160 (534)
Q Consensus 83 W~~v~~~~dl~~~~~-~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~-~~l~CpyHGW~Fd~~G~c~~iP 160 (534)
|+.|+.++||++++. ..+.+.|++|+|+|+.+|+++|++|+||||+++|+.|...+ +.|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~p 80 (123)
T cd03536 1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARDKDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGAP 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEECC
Confidence 999999999998665 45579999999999889999999999999999999987753 6799999999999999999999
Q ss_pred CCCCC---CCC-CccCccceEEEEEecCeEEEEcCCCCCC
Q 039074 161 QLPAD---AKI-PRSACVRTYEVKESQGVVWVWMSQKTPP 196 (534)
Q Consensus 161 ~~~~~---~~~-~~~~~l~~~pv~~~~G~Vwv~~~~~~~~ 196 (534)
..... ..+ +...+|++|+|++++|+|||++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~~ 120 (123)
T cd03536 81 VEKECMHGKMRTKAELGLHKARVTLYGGLIFATWNIDGPS 120 (123)
T ss_pred ccccccccCCCCHHHCCCcceeEEEECCEEEEEeCCCCCC
Confidence 75432 112 2346799999999999999999976544
No 23
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.92 E-value=1.3e-24 Score=186.42 Aligned_cols=97 Identities=27% Similarity=0.577 Sum_probs=88.9
Q ss_pred cEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEec-CCceeecCC
Q 039074 83 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKIPQ 161 (534)
Q Consensus 83 W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~-~G~c~~iP~ 161 (534)
|++|+.++||++++.+.+++.|++++|+|+.+|+++||+|.|||+|++|++|.++++.|+||||||+||. +|.|.. |
T Consensus 1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~-p- 78 (98)
T cd03530 1 WIDIGALEDIPPRGARKVQTGGGEIAVFRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-P- 78 (98)
T ss_pred CEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCCEEEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCCCC-C-
Confidence 9999999999999999999999999999998899999999999999999999999999999999999998 788652 2
Q ss_pred CCCCCCCCccCccceEEEEEecCeEEEE
Q 039074 162 LPADAKIPRSACVRTYEVKESQGVVWVW 189 (534)
Q Consensus 162 ~~~~~~~~~~~~l~~~pv~~~~G~Vwv~ 189 (534)
...++++|||++++|.|||.
T Consensus 79 --------~~~~l~~y~v~v~~g~v~v~ 98 (98)
T cd03530 79 --------DEGCVRTFPVKVEDGRVYLG 98 (98)
T ss_pred --------CCCccceEeEEEECCEEEEC
Confidence 12469999999999999983
No 24
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.91 E-value=2e-24 Score=185.04 Aligned_cols=96 Identities=33% Similarity=0.631 Sum_probs=89.5
Q ss_pred cEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEec-CCceeecCC
Q 039074 83 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKIPQ 161 (534)
Q Consensus 83 W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~-~G~c~~iP~ 161 (534)
|++++.++||++++.+.+++.|++++|+|+ +|+++||+|+|||+|++|+.|.++++.|+||||||+||. +|+|+..|.
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~-~~~~~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~ 79 (98)
T cd03528 1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRV-DGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPA 79 (98)
T ss_pred CeEEEEhhhcCCCCEEEEEECCeEEEEEEE-CCEEEEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCC
Confidence 999999999998888999999999999998 569999999999999999999988899999999999998 999998774
Q ss_pred CCCCCCCCccCccceEEEEEecCeEEE
Q 039074 162 LPADAKIPRSACVRTYEVKESQGVVWV 188 (534)
Q Consensus 162 ~~~~~~~~~~~~l~~~pv~~~~G~Vwv 188 (534)
...+++||+++++|.|||
T Consensus 80 ---------~~~L~~~~v~~~~g~v~v 97 (98)
T cd03528 80 ---------TEPLKTYPVKVEDGDVYV 97 (98)
T ss_pred ---------CCCcceEeEEEECCEEEE
Confidence 245899999999999998
No 25
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.91 E-value=7.2e-24 Score=185.14 Aligned_cols=102 Identities=28% Similarity=0.459 Sum_probs=91.2
Q ss_pred cEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEec-CCceeecCC
Q 039074 83 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKIPQ 161 (534)
Q Consensus 83 W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~-~G~c~~iP~ 161 (534)
|++|+.++||++++.+.+++.|.+++++|+.+|+++|++|+|||+|++|+.|.++++.|+||||||+||. +|.|.. |
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~~-~- 78 (108)
T cd03474 1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAPEGGEFRAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGLN-P- 78 (108)
T ss_pred CeEeeehhccCCCceEEEEECCeEEEEEEccCCeEEEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCccccC-C-
Confidence 8999999999998889999999999999988999999999999999999999988889999999999998 666542 2
Q ss_pred CCCCCCCCccCccceEEEEEecCeEEEEcCCCC
Q 039074 162 LPADAKIPRSACVRTYEVKESQGVVWVWMSQKT 194 (534)
Q Consensus 162 ~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~ 194 (534)
...+|++|||++++|.|||++++.+
T Consensus 79 --------~~~~L~~~~v~v~~g~v~v~~~~~~ 103 (108)
T cd03474 79 --------RDCRLARYPVKVEGGDILVDTEGVL 103 (108)
T ss_pred --------CCCccceEeEEEECCEEEEeCCCcC
Confidence 2357999999999999999997543
No 26
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.91 E-value=7.7e-24 Score=189.17 Aligned_cols=114 Identities=24% Similarity=0.493 Sum_probs=95.3
Q ss_pred cEEeeecCCCCCCCc-EEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcc-cccEEEccCCCeEEecCCceeecC
Q 039074 83 WYPLYLTKDVPDDAP-LGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQL-IDGRLECLYHGWQFEGEGKCVKIP 160 (534)
Q Consensus 83 W~~v~~~~dl~~~~~-~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i-~~~~l~CpyHGW~Fd~~G~c~~iP 160 (534)
|+.|++++||++++. ..+.+.|++|+|+|+.+|+++|+.|.|||||++|+.|.. +++.|+||||||+||.||+|+.+|
T Consensus 1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~p 80 (123)
T cd03542 1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKVK 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEECC
Confidence 899999999998776 666899999999999899999999999999999999866 456999999999999999999999
Q ss_pred CCCCC---CCCCc--cCccceEE-EEEecCeEEEEcCCCCCC
Q 039074 161 QLPAD---AKIPR--SACVRTYE-VKESQGVVWVWMSQKTPP 196 (534)
Q Consensus 161 ~~~~~---~~~~~--~~~l~~~p-v~~~~G~Vwv~~~~~~~~ 196 (534)
..+.. ..+++ ..+|..++ +++++|+||+++++++++
T Consensus 81 ~~~~~~y~~~~~~~~~~~L~~~~~~~~~~g~v~~~~~~~~~~ 122 (123)
T cd03542 81 DPKTAGYPEGFNCDGSHDLTKVARFESYRGFLFGSLNADVAP 122 (123)
T ss_pred cccccCcCcccChhhcCCCccceeEEEECCEEEEEcCCCCCC
Confidence 64321 12333 35788886 566799999999976543
No 27
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.90 E-value=9.4e-24 Score=182.95 Aligned_cols=97 Identities=25% Similarity=0.377 Sum_probs=87.7
Q ss_pred cEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCc-cccCccc----ccEEEccCCCeEEec-CCce
Q 039074 83 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAK-LSEGQLI----DGRLECLYHGWQFEG-EGKC 156 (534)
Q Consensus 83 W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~-Ls~G~i~----~~~l~CpyHGW~Fd~-~G~c 156 (534)
|++|+.++||++++.+.+++.|++|+|+|+++|+++|++|+|||++++ |++|.+. ++.|+||||||+||. +|+|
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~ 80 (103)
T cd03529 1 WQTVCALDDLPPGSGVAALVGDTQIAIFRLPGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRC 80 (103)
T ss_pred CEEEeEHHHCCCCCcEEEEECCEEEEEEEeCCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCc
Confidence 999999999999889999999999999999777999999999999997 8899874 248999999999996 9999
Q ss_pred eecCCCCCCCCCCccCccceEEEEEecCeEEEE
Q 039074 157 VKIPQLPADAKIPRSACVRTYEVKESQGVVWVW 189 (534)
Q Consensus 157 ~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~ 189 (534)
+..|. .++++|||++++|.|||.
T Consensus 81 ~~~p~----------~~l~~y~v~~~~g~v~v~ 103 (103)
T cd03529 81 LEDED----------VSVATFPVRVEDGEVYVK 103 (103)
T ss_pred cCCCC----------ccEeeEeEEEECCEEEEC
Confidence 98662 358999999999999983
No 28
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.90 E-value=1.2e-23 Score=181.70 Aligned_cols=100 Identities=22% Similarity=0.428 Sum_probs=92.3
Q ss_pred CcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEec-CCceeecC
Q 039074 82 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKIP 160 (534)
Q Consensus 82 ~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~-~G~c~~iP 160 (534)
.|+.++.++||++++...+.+.|++++|+|+.+|+++|++|.|||++++|+.|.++++.|+||+|||+||+ ||+|+..|
T Consensus 1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p 80 (101)
T TIGR02377 1 NWVKACDADDIGREDVARFDHGGRTFAIYRTPDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPP 80 (101)
T ss_pred CcEEEEEHHHcCCCCEEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCC
Confidence 49999999999999889999999999999987899999999999999999999999999999999999997 99999876
Q ss_pred CCCCCCCCCccCccceEEEEEecCeEEEEc
Q 039074 161 QLPADAKIPRSACVRTYEVKESQGVVWVWM 190 (534)
Q Consensus 161 ~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~ 190 (534)
. ...+++|||++++|.|||.+
T Consensus 81 ~---------~~~l~~y~v~v~~g~v~V~~ 101 (101)
T TIGR02377 81 V---------CVNLKTYPVKVVDGAVYVDI 101 (101)
T ss_pred c---------cCCcceEeEEEECCEEEEeC
Confidence 4 23589999999999999864
No 29
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.90 E-value=1.1e-23 Score=183.18 Aligned_cols=99 Identities=29% Similarity=0.585 Sum_probs=89.7
Q ss_pred CcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCC-CCccccCcccccE----EEccCCCeEEec-CCc
Q 039074 82 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHR-LAKLSEGQLIDGR----LECLYHGWQFEG-EGK 155 (534)
Q Consensus 82 ~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHR-ga~Ls~G~i~~~~----l~CpyHGW~Fd~-~G~ 155 (534)
.|++|+.++||+++..+.+++.|++|+|+|+.+|+++|++|+|||+ +.+|++|.+.++. |+||||||+||. +|+
T Consensus 1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~ 80 (105)
T TIGR02378 1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGR 80 (105)
T ss_pred CcEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCcc
Confidence 5999999999999988999999999999998788999999999999 8999999887554 999999999998 899
Q ss_pred eeecCCCCCCCCCCccCccceEEEEEecCeEEEEc
Q 039074 156 CVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWM 190 (534)
Q Consensus 156 c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~ 190 (534)
|+..| ..+|++|||++++|.|||.+
T Consensus 81 ~~~~~----------~~~L~~y~v~v~~g~v~v~~ 105 (105)
T TIGR02378 81 CLEDD----------SGSVRTYEVRVEDGRVYVAL 105 (105)
T ss_pred ccCCC----------CccEeeEeEEEECCEEEEeC
Confidence 98643 24699999999999999964
No 30
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.89 E-value=1.2e-22 Score=177.07 Aligned_cols=101 Identities=30% Similarity=0.474 Sum_probs=90.7
Q ss_pred CcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccc-cEEEccCCCeEEec-CCceeec
Q 039074 82 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLID-GRLECLYHGWQFEG-EGKCVKI 159 (534)
Q Consensus 82 ~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~-~~l~CpyHGW~Fd~-~G~c~~i 159 (534)
.|+.|+.++||++++.+.+.+. ++|+|+|. +|+++|++|+|||++++|+.|.+++ +.|+||+|||+||. +|+|+..
T Consensus 2 ~~~~v~~~~~l~~g~~~~~~~~-~~i~v~~~-~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~ 79 (106)
T PRK09965 2 NRIYACPVADLPEGEALRVDTS-PVIALFNV-GGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCL 79 (106)
T ss_pred CcEEeeeHHHcCCCCeEEEeCC-CeEEEEEE-CCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCC
Confidence 4999999999999988888876 88999996 8999999999999999999999987 79999999999998 8999876
Q ss_pred CCCCCCCCCCccCccceEEEEEecCeEEEEcCCC
Q 039074 160 PQLPADAKIPRSACVRTYEVKESQGVVWVWMSQK 193 (534)
Q Consensus 160 P~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~ 193 (534)
|. ..+|++|++++++|.|||.+.+.
T Consensus 80 p~---------~~~l~~y~v~v~~g~v~v~~~~~ 104 (106)
T PRK09965 80 PA---------TDPLRTYPVHVEGGDIFIDLPEA 104 (106)
T ss_pred CC---------CCCcceEeEEEECCEEEEEccCC
Confidence 63 34699999999999999998643
No 31
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.88 E-value=1.2e-22 Score=173.25 Aligned_cols=92 Identities=32% Similarity=0.558 Sum_probs=85.8
Q ss_pred eeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEec-CCceeecCCCCC
Q 039074 86 LYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKIPQLPA 164 (534)
Q Consensus 86 v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~-~G~c~~iP~~~~ 164 (534)
|+.++||++++++.+.+.|++|+|+|. +|+++|++|+|||++++|+.|.+.++.|+||||||+||. +|+|+..|..
T Consensus 3 v~~~~~l~~g~~~~~~~~~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~-- 79 (95)
T cd03478 3 VCRLSDLGDGEMKEVDVGDGKVLLVRQ-GGEVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPAL-- 79 (95)
T ss_pred eeehhhCCCCCEEEEEeCCcEEEEEEE-CCEEEEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCcc--
Confidence 789999999999999999999999998 899999999999999999999999999999999999998 9999988742
Q ss_pred CCCCCccCccceEEEEEecCeEE
Q 039074 165 DAKIPRSACVRTYEVKESQGVVW 187 (534)
Q Consensus 165 ~~~~~~~~~l~~~pv~~~~G~Vw 187 (534)
..|++||+++++|.||
T Consensus 80 -------~~l~~~~v~~~~g~i~ 95 (95)
T cd03478 80 -------DSLPCYEVEVEDGRVY 95 (95)
T ss_pred -------CCcceEEEEEECCEEC
Confidence 3589999999999997
No 32
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.87 E-value=1.1e-21 Score=170.03 Aligned_cols=98 Identities=34% Similarity=0.713 Sum_probs=90.9
Q ss_pred CcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCC-CCCccccCccccc----EEEccCCCeEEec-CCc
Q 039074 82 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPH-RLAKLSEGQLIDG----RLECLYHGWQFEG-EGK 155 (534)
Q Consensus 82 ~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpH-Rga~Ls~G~i~~~----~l~CpyHGW~Fd~-~G~ 155 (534)
+|.+|+.++||++++...+.+.|++|+|||..+|+++|++|+||| ++++|++|.+.+. .|.||.|+|.||+ +|+
T Consensus 1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~ 80 (104)
T PF13806_consen 1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRVRDGEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGE 80 (104)
T ss_dssp SEEEEEETTTSCTTSEEEEEETTEEEEEEEESTTEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTE
T ss_pred CeeEeccHHHCCCCCcEEEEECCeEEEEEEeCCCCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcC
Confidence 599999999999999999999999999999988999999999999 8999999999765 9999999999998 999
Q ss_pred eeecCCCCCCCCCCccCccceEEEEEecCeEEEE
Q 039074 156 CVKIPQLPADAKIPRSACVRTYEVKESQGVVWVW 189 (534)
Q Consensus 156 c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~ 189 (534)
|+..| ..++++|||++++|.|||.
T Consensus 81 ~~~~~----------~~~l~~ypvrv~~g~V~V~ 104 (104)
T PF13806_consen 81 CLEDP----------DVSLRTYPVRVEDGQVYVE 104 (104)
T ss_dssp ESSEC----------SEBSBEEEEEECTTEEEEE
T ss_pred cCCCC----------CCcEEeEEEEEECCEEEEC
Confidence 98744 3569999999999999984
No 33
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.85 E-value=6.7e-21 Score=166.43 Aligned_cols=98 Identities=19% Similarity=0.347 Sum_probs=87.1
Q ss_pred CcEEeeecCCCCCCCcEEEEEcCEEEEEEEe-cCCcEEEEeCCCCCCCCc-cccCccc--cc--EEEccCCCeEEec-CC
Q 039074 82 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKD-GNGELRCYQDRCPHRLAK-LSEGQLI--DG--RLECLYHGWQFEG-EG 154 (534)
Q Consensus 82 ~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~-~~G~~~a~~d~CpHRga~-Ls~G~i~--~~--~l~CpyHGW~Fd~-~G 154 (534)
.|..|+.++||++++...+.+.|++|+|+|. .+|+++|++|.|||.+++ |++|.+. ++ .|+||+|||+||+ +|
T Consensus 3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG 82 (108)
T PRK09511 3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDG 82 (108)
T ss_pred cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCc
Confidence 4999999999999999999999999999995 578999999999999985 9999884 23 4999999999998 99
Q ss_pred ceeecCCCCCCCCCCccCccceEEEEEecCeEEEE
Q 039074 155 KCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVW 189 (534)
Q Consensus 155 ~c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~ 189 (534)
+|+..| ..+|++|||++++|.|||.
T Consensus 83 ~~~~~~----------~~~l~typV~ve~g~V~v~ 107 (108)
T PRK09511 83 LCMEDE----------QFSVKHYDARVKDGVVQLR 107 (108)
T ss_pred ccCCCC----------CccEeeEeEEEECCEEEEe
Confidence 998633 2469999999999999985
No 34
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.84 E-value=8.2e-21 Score=162.27 Aligned_cols=93 Identities=31% Similarity=0.675 Sum_probs=78.0
Q ss_pred CcEEeeecCCCCCCC-cEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCc--ccccEEEccCCCeEEecC-Ccee
Q 039074 82 EWYPLYLTKDVPDDA-PLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQ--LIDGRLECLYHGWQFEGE-GKCV 157 (534)
Q Consensus 82 ~W~~v~~~~dl~~~~-~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~--i~~~~l~CpyHGW~Fd~~-G~c~ 157 (534)
+|++|+.++||++.+ ...+.+ |...+++++.+|+++|++|+|||+|++|+.|. .+++.|+||||||+||.+ |+|+
T Consensus 1 ~W~~v~~~~el~~~~~~~~~~~-~~~~v~~~~~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~ 79 (97)
T PF00355_consen 1 QWVPVCRSSELPEPGDVKRVDV-GGKLVLVRRSDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECV 79 (97)
T ss_dssp SEEEEEEGGGSHSTTEEEEEEE-TTEEEEEEETTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEE
T ss_pred CEEEeeEHHHCCCCCCEEEEEc-CCcEEEEEeCCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEe
Confidence 599999999999844 466677 66666666789999999999999999999995 346899999999999996 9999
Q ss_pred ecCCCCCCCCCCccCccceEEEEEecC
Q 039074 158 KIPQLPADAKIPRSACVRTYEVKESQG 184 (534)
Q Consensus 158 ~iP~~~~~~~~~~~~~l~~~pv~~~~G 184 (534)
..|.. .+++.|||+++++
T Consensus 80 ~~p~~---------~~l~~~~v~ve~~ 97 (97)
T PF00355_consen 80 GGPAP---------RPLPLYPVKVEGD 97 (97)
T ss_dssp ESTTC---------SBSTEEEEEEETT
T ss_pred cCCCC---------CCcCCCCeEEeCC
Confidence 99853 2688999999874
No 35
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.83 E-value=3.7e-20 Score=158.67 Aligned_cols=95 Identities=29% Similarity=0.472 Sum_probs=86.9
Q ss_pred cEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEec-CCceeecCC
Q 039074 83 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKIPQ 161 (534)
Q Consensus 83 W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~-~G~c~~iP~ 161 (534)
|++++..++|+++....+.+.|.+++|+|+.+|+++|++|.|||++++|+.|.++++.|+||+|||+||. ||+|+..|.
T Consensus 1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~ 80 (98)
T cd03467 1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPA 80 (98)
T ss_pred CEEeeeccccCCCceEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCC
Confidence 8999999999988899999999999999998899999999999999999999888999999999999999 999998774
Q ss_pred CCCCCCCCccCccceEEEEEec-CeE
Q 039074 162 LPADAKIPRSACVRTYEVKESQ-GVV 186 (534)
Q Consensus 162 ~~~~~~~~~~~~l~~~pv~~~~-G~V 186 (534)
...+++|++++.+ +.|
T Consensus 81 ---------~~~l~~~~v~~~~~~~~ 97 (98)
T cd03467 81 ---------PRPLPKYPVKVEGDGVV 97 (98)
T ss_pred ---------CCCcCEEEEEEeCCceE
Confidence 3568999999994 444
No 36
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.83 E-value=4.5e-20 Score=160.47 Aligned_cols=102 Identities=27% Similarity=0.520 Sum_probs=90.1
Q ss_pred cCcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCccccc-EEEccCCCeEEec-CCceee
Q 039074 81 EEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDG-RLECLYHGWQFEG-EGKCVK 158 (534)
Q Consensus 81 ~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~-~l~CpyHGW~Fd~-~G~c~~ 158 (534)
..|+.++.++||+++..+.+.+.+..+++++..+|+++|++|+|||.+++|+.|.++++ .|+||.|+|.||. +|+|+.
T Consensus 3 ~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~ 82 (106)
T COG2146 3 MNWIRICKVDDLPEGGGVRVLVGGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLE 82 (106)
T ss_pred CceEEEEehHhcCCCCceEEEecCCEEEEEEecCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceec
Confidence 47999999999999988888885536777777899999999999999999999999875 6999999999998 999998
Q ss_pred cCCCCCCCCCCccCccceEEEEEecCeEEEEcC
Q 039074 159 IPQLPADAKIPRSACVRTYEVKESQGVVWVWMS 191 (534)
Q Consensus 159 iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~ 191 (534)
.|+.. .|++||+++++|.|||.++
T Consensus 83 ~p~~~---------~l~~y~vrve~g~v~v~~~ 106 (106)
T COG2146 83 PPAGK---------TLKTYPVRVEGGRVFVDLD 106 (106)
T ss_pred CCCCC---------ceeEEeEEEECCEEEEecC
Confidence 87531 1999999999999999863
No 37
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.80 E-value=2.2e-19 Score=152.06 Aligned_cols=88 Identities=15% Similarity=0.288 Sum_probs=78.0
Q ss_pred eeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEecCCceeecCCCCCC
Q 039074 86 LYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPAD 165 (534)
Q Consensus 86 v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~~G~c~~iP~~~~~ 165 (534)
++.++||+++....+.+.|++|+|+|+.+|+++||+|+|||+|++|+.|.. ++.|+||||||+||.||+|+..|.
T Consensus 2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~-~~~i~CP~Hg~~Fd~~G~~~~~Pa---- 76 (91)
T cd03477 2 ITDIEDLAPGEGGVVNIGGKRLAVYRDEDGVLHTVSATCTHLGCIVHWNDA-EKSWDCPCHGSRFSYDGEVIEGPA---- 76 (91)
T ss_pred ccchhhcCCCCeEEEEECCEEEEEEECCCCCEEEEcCcCCCCCCCCcccCC-CCEEECCCCCCEECCCCcEeeCCC----
Confidence 578899999989999999999999999899999999999999999998865 569999999999999999998874
Q ss_pred CCCCccCccceEEEEEec
Q 039074 166 AKIPRSACVRTYEVKESQ 183 (534)
Q Consensus 166 ~~~~~~~~l~~~pv~~~~ 183 (534)
...+++|+|+--+
T Consensus 77 -----~~~l~~y~v~~~~ 89 (91)
T cd03477 77 -----VSGLKPADDAPID 89 (91)
T ss_pred -----CCCCCeeEeeccc
Confidence 2458889987543
No 38
>cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Stenotrophomonas maltophilia dicamba O-demethylase (DMO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.78 E-value=1.5e-18 Score=164.72 Aligned_cols=173 Identities=19% Similarity=0.275 Sum_probs=111.8
Q ss_pred EEEeecChhhhcccCCCCccCccccCCcccccccccCCCceEEEEeeccCccc-cccCCCC---------CCCCCeEEEE
Q 039074 218 IHELPYDHSILLENLMDPAHIPISHDRTDWTAKREDAQPLGFEVTERTDRGFA-GRWGKEK---------DEPLPNFLRF 287 (534)
Q Consensus 218 ~~~~~~~~~~~~EN~lD~~H~~~~H~~~~~~~~r~~~~p~~~~v~~~~~~gf~-~~~~~~~---------~~~~~~~~~F 287 (534)
..+++|||+.++||++|++|++|+|+++++........+..+++++.. .|+. ..+.... ..+....+.|
T Consensus 5 ~~~~~~n~~~~~EN~~D~~H~~fvH~~~~g~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (196)
T cd08878 5 YRHIDCNWLQVVENLMDPSHVSFVHRSSIGRDAADLPSGPPKEVEEVP-RGVTYRRWREDEDPPPFGFEGPVDRWRVIEF 83 (196)
T ss_pred cEEecCCcEEEehhCccccchhhhChhhhCccccccccCCCceEEEeC-CEEEEEEEecCCCCCCCCCCCCccEEEEEEE
Confidence 457899999999999999999999999875432210023345554332 3432 2222111 1122456789
Q ss_pred ecCeeeecceeeecC---CCCceeEEEEEEEeeeCCCCeEEEEEEEecCCCCc-----ccccchhhhhhhhhhhhHHhHH
Q 039074 288 EAPCVLQNNRELVDS---KTGEKHYFTGLFLCRPTGQGKSMLIVRFGATKRSP-----LAKLFPKWYFHQNASKVFEQDM 359 (534)
Q Consensus 288 ~~P~~~~~~~~~~~~---~~G~~~~~~~v~~~~Pv~pg~trl~~~~~~~~~~~-----~~~~~p~w~~h~~~~~Vl~eD~ 359 (534)
.+||++.......+. +.| ..+..++.++|+++++|++++.+.++.... ...+.+.+ ......|++||+
T Consensus 84 ~~P~~~~~~~~~~~~~~~~~~--~~~~~~~~~tPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~eD~ 159 (196)
T cd08878 84 LLPNVLLIDPGVAPAGTREQG--VRMRVTHWITPIDETTTHYFWFFVRNFAPDEEKKDDEELTETL--RSGLSGAFNEDK 159 (196)
T ss_pred ECCEEEEEecccccCCcCCCc--ceEEEEEEEccCCCCeEEEEEEeccCCCCCccccCCHHHHHHH--HHHhhhhchhHH
Confidence 999998765432210 011 134566778999999999988877665432 01111222 235678999999
Q ss_pred HHHHHHHHhhhhcCCCccccccccCcCcHHHHHHHHHHHHh
Q 039074 360 GFLSSQNEVLMKETVPTKELYLNLRSSDTWVAEYRKWMDKV 400 (534)
Q Consensus 360 ~iL~~Qe~~l~~~~~~~k~~y~~~~~aD~~ViafRrWl~~~ 400 (534)
.|+|+|++.+... +.++.+ ..+|+++++||||+++.
T Consensus 160 ~i~e~q~~~~~~~--~~~~~l---~~~D~~~~~~Rr~l~~~ 195 (196)
T cd08878 160 EAVEAQQRIIDRD--PTREHL---GLSDKGIVRFRRLLRRL 195 (196)
T ss_pred HHHHHHHHHHhcC--Cccccc---ccccHHHHHHHHHHHHh
Confidence 9999999998753 333433 33899999999999975
No 39
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.74 E-value=1.2e-17 Score=149.57 Aligned_cols=96 Identities=17% Similarity=0.243 Sum_probs=84.4
Q ss_pred EEeeecCCCCCCCcEEEEEcC--EEEEEEEec---------CCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEec
Q 039074 84 YPLYLTKDVPDDAPLGLTVFD--QQIVLYKDG---------NGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG 152 (534)
Q Consensus 84 ~~v~~~~dl~~~~~~~~~l~g--~~lvv~r~~---------~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~ 152 (534)
+.|+.++||++++.+.+.+.+ ++++|+|.. +|+++|++|+|||.+++|++|. +++.|+||+|||+||.
T Consensus 4 ~~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~-~~~~v~CP~Hg~~Fdl 82 (126)
T cd03476 4 VKVANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP-SNKTFVCPCHFSQFDP 82 (126)
T ss_pred eEEeeHHHCCCCCeEEEEcCCCCCcEEEEECCccccCccccCCEEEEEeCcCCCCCccccccc-cCCEEEccCcCCEEeC
Confidence 458899999999889998887 899999974 6899999999999999999987 7789999999999998
Q ss_pred --CCceeecCCCCCCCCCCccCccceEEEEEe--cCeEEEE
Q 039074 153 --EGKCVKIPQLPADAKIPRSACVRTYEVKES--QGVVWVW 189 (534)
Q Consensus 153 --~G~c~~iP~~~~~~~~~~~~~l~~~pv~~~--~G~Vwv~ 189 (534)
+|+|+..|. ..+|+.||++++ +|.|||.
T Consensus 83 ~tgG~~~~gPa---------~~~L~~ypv~ve~~~g~V~~~ 114 (126)
T cd03476 83 ARGGQMVSGQA---------TQNLPQIVLEYDEASGDIYAV 114 (126)
T ss_pred CCCCeEEcCCC---------CCCCCeEEEEEECCCCEEEEE
Confidence 479997662 356999999999 9999985
No 40
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.68 E-value=3.9e-16 Score=139.02 Aligned_cols=84 Identities=14% Similarity=0.203 Sum_probs=68.4
Q ss_pred EEEEEcCEEEEEEEecCCcE--EEEeCCCCCCCCccccCcccccEEEccCCCeEEecCCceeecCCCCCCCCCCccCccc
Q 039074 98 LGLTVFDQQIVLYKDGNGEL--RCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVR 175 (534)
Q Consensus 98 ~~~~l~g~~lvv~r~~~G~~--~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~l~ 175 (534)
+.+...+..|+|+++ +|++ +|++|+|||+|++|+.|.. ++.|+||+|||+||.+|+++..|. ...|.
T Consensus 28 ~~~~~~~~~Ilv~~~-dg~i~~~A~~~~CpH~G~~l~~~~~-~~~i~CP~Hg~~Fd~tG~~~~gPa---------~~~L~ 96 (126)
T cd03471 28 VQGLKGDPTYLIVEE-DKTIANYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDATGKVVRGPA---------PLSLA 96 (126)
T ss_pred EEEecCCeEEEEEeC-CCeEEEEEecCCCcCCCCCcCccCC-CCEEEcCCCCCEECCCCCEecCCC---------CCCCc
Confidence 333455566666664 8876 8999999999999998754 579999999999999999987663 34689
Q ss_pred eEEEEEecCeEEEEcCC
Q 039074 176 TYEVKESQGVVWVWMSQ 192 (534)
Q Consensus 176 ~~pv~~~~G~Vwv~~~~ 192 (534)
.|+|++++|.|||.+..
T Consensus 97 ~y~V~vedg~I~V~~~~ 113 (126)
T cd03471 97 LVHATVDDDKVVLSPWT 113 (126)
T ss_pred eEeEEEECCEEEEEECc
Confidence 99999999999998654
No 41
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.66 E-value=2.5e-16 Score=135.33 Aligned_cols=72 Identities=18% Similarity=0.401 Sum_probs=65.1
Q ss_pred cCCCCCCCcEEEEE-cCEEEEEEEecCCcEEEEeCCCCCCCCccccC--cccccEEEccCCCeEEec-CCceeecCC
Q 039074 89 TKDVPDDAPLGLTV-FDQQIVLYKDGNGELRCYQDRCPHRLAKLSEG--QLIDGRLECLYHGWQFEG-EGKCVKIPQ 161 (534)
Q Consensus 89 ~~dl~~~~~~~~~l-~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G--~i~~~~l~CpyHGW~Fd~-~G~c~~iP~ 161 (534)
+.||+++..+.+.+ .|++|+|+|. +|+++|++|+|||++++|++| .++++.|+||+|||+||. +|+++.-|.
T Consensus 14 l~eL~~G~~~~v~v~~g~~I~V~~~-~G~~~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p~ 89 (107)
T cd03473 14 VANLKEGINFFRNKEDGKKYIIYKS-KSELKACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPPD 89 (107)
T ss_pred HhcCCCCceEEEEecCCcEEEEEEE-CCEEEEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCCc
Confidence 37899988899999 9999999997 899999999999999999994 588899999999999998 999987553
No 42
>PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO). One of the proteins the domain is found in is Pheophorbide a oxygenase (PaO) which seems to be a key regulator of chlorophyll catabolism. Arabidopsis PaO (AtPaO) is a Rieske-type 2Fe-2S enzyme that is identical to Arabidopsis accelerated cell death 1 and homologous to lethal leaf spot 1 (LLS1) of maize [], in which the domain described here is also found. ; GO: 0010277 chlorophyllide a oxygenase [overall] activity, 0055114 oxidation-reduction process
Probab=99.65 E-value=2.4e-16 Score=133.83 Aligned_cols=86 Identities=33% Similarity=0.578 Sum_probs=72.7
Q ss_pred EecCeeeecceeeecCCCCceeEEEEEEEeeeCCCCeEEEEEEEecCCCCcccccchhhhhhhhhhhhHHhHHHHHHHHH
Q 039074 287 FEAPCVLQNNRELVDSKTGEKHYFTGLFLCRPTGQGKSMLIVRFGATKRSPLAKLFPKWYFHQNASKVFEQDMGFLSSQN 366 (534)
Q Consensus 287 F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trl~~~~~~~~~~~~~~~~p~w~~h~~~~~Vl~eD~~iL~~Qe 366 (534)
|++||++.++..... ..+....++.+++|+|++||+||+++++++++..++.+.+|+|+.|..+++|||||+.+||.||
T Consensus 1 F~pPc~v~~~~~~~~-~~~~~~~~~~~~~~vP~~pG~~Rli~r~~~~f~~~~~k~~P~wl~H~~~n~VLd~Dl~lLh~Qe 79 (92)
T PF08417_consen 1 FIPPCLVRSTEEGPK-KKSCGKRLHQVFYCVPTGPGRCRLIWRFPRNFPAWIFKLIPRWLSHLTSNKVLDQDLYLLHGQE 79 (92)
T ss_pred CCCCEEEEEeccccc-cCCCCCEEEEEEEEEECCCCeEEEEEEehhhhhhHHhhcCCHHHHHHhhCcccHHHHHHHHHHH
Confidence 789999987621111 2233456778999999999999999999999977889999999999999999999999999999
Q ss_pred HhhhhcC
Q 039074 367 EVLMKET 373 (534)
Q Consensus 367 ~~l~~~~ 373 (534)
+++++.|
T Consensus 80 ~~l~~~g 86 (92)
T PF08417_consen 80 RRLAREG 86 (92)
T ss_pred HHHHHhc
Confidence 9998854
No 43
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.64 E-value=9.6e-16 Score=137.69 Aligned_cols=95 Identities=18% Similarity=0.244 Sum_probs=80.6
Q ss_pred EEeeecCCCCCCCcEEEEEcC--EEEEEEEe---------cCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEec
Q 039074 84 YPLYLTKDVPDDAPLGLTVFD--QQIVLYKD---------GNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG 152 (534)
Q Consensus 84 ~~v~~~~dl~~~~~~~~~l~g--~~lvv~r~---------~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~ 152 (534)
+.|+.++||++++++.+.+.+ .+++++|. .+|+++|++|.|||.+++|++|. +++.|+||.|||+||.
T Consensus 7 ~~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~-~~~~i~CP~Hga~Fdl 85 (129)
T TIGR02694 7 NRVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA-DNKTFNCPCHFSVFDP 85 (129)
T ss_pred eEEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc-CCCEEEcCCCCCEECC
Confidence 458999999999999998765 47888884 48999999999999999999874 6789999999999998
Q ss_pred C--CceeecCCCCCCCCCCccCccceEEEEEe-cCeEEE
Q 039074 153 E--GKCVKIPQLPADAKIPRSACVRTYEVKES-QGVVWV 188 (534)
Q Consensus 153 ~--G~c~~iP~~~~~~~~~~~~~l~~~pv~~~-~G~Vwv 188 (534)
+ |+|+..|. ..+|.+||++++ +|.||.
T Consensus 86 ~tgG~~~~gP~---------~~~L~~y~v~v~~~G~V~~ 115 (129)
T TIGR02694 86 EKGGQQVWGQA---------TQNLPQIVLRVADNGDIFA 115 (129)
T ss_pred CCCCcEECCCC---------CCCCCeeEEEEECCCeEEE
Confidence 5 69987552 356999999997 599994
No 44
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.56 E-value=2.1e-14 Score=128.75 Aligned_cols=92 Identities=12% Similarity=0.110 Sum_probs=79.4
Q ss_pred ecCCCCCCCcEEEEEcCEEEEEEEec----------------------------CCcEEEEeCCCCCCCCccccCccccc
Q 039074 88 LTKDVPDDAPLGLTVFDQQIVLYKDG----------------------------NGELRCYQDRCPHRLAKLSEGQLIDG 139 (534)
Q Consensus 88 ~~~dl~~~~~~~~~l~g~~lvv~r~~----------------------------~G~~~a~~d~CpHRga~Ls~G~i~~~ 139 (534)
.+++|++++.+.+...|++|+|+|.. +|+++|+.+.|||.|+.+..+.+.++
T Consensus 5 dl~~l~~G~~~~v~w~Gkpv~I~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~~~~~ 84 (126)
T cd03470 5 DLSKIEEGQLITVEWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRAGDYG 84 (126)
T ss_pred EhhhCCCCCEEEEEECCeEEEEEECCHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeeccccCCCC
Confidence 46899999999999999999999842 57999999999999999888766788
Q ss_pred EEEccCCCeEEecCCceeecCCCCCCCCCCccCccceEEEEEec-CeEEE
Q 039074 140 RLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQ-GVVWV 188 (534)
Q Consensus 140 ~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~l~~~pv~~~~-G~Vwv 188 (534)
.+.||+|||+||.+|+.+..|. ...|+.||+++.+ +.|+|
T Consensus 85 ~~~CPcHgs~Fdl~G~~~~gPa---------~~~L~~~p~~~~~~~~l~i 125 (126)
T cd03470 85 GFFCPCHGSHYDASGRIRKGPA---------PLNLEVPPYKFLSDTTIVI 125 (126)
T ss_pred EEEecCcCCEECCCCeEecCCC---------CCCCCeeeEEEecCCEEEe
Confidence 9999999999999999887653 3468999999877 67664
No 45
>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-te
Probab=99.53 E-value=1.1e-13 Score=130.34 Aligned_cols=168 Identities=17% Similarity=0.205 Sum_probs=102.8
Q ss_pred eEEEeecChhhhcccCCCCccCccccCCcccccc---cccCCCceEEEEee---ccCccccccCCCC--------CCCCC
Q 039074 217 TIHELPYDHSILLENLMDPAHIPISHDRTDWTAK---REDAQPLGFEVTER---TDRGFAGRWGKEK--------DEPLP 282 (534)
Q Consensus 217 ~~~~~~~~~~~~~EN~lD~~H~~~~H~~~~~~~~---r~~~~p~~~~v~~~---~~~gf~~~~~~~~--------~~~~~ 282 (534)
...+++||||+++||++|+||++++|+++..... .... ..+.+... ...+....+.... .....
T Consensus 3 ~~~~~~~NWK~~~En~~E~YH~~~~H~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (188)
T cd00680 3 YEYEVDCNWKLAVENFLECYHVPTVHPDTLATGLPLPLLFG--DHYRVDDTGEGPGEGLSRHWGDGKGPQSALPGLKPGG 80 (188)
T ss_pred eEEEeccCceEehhhccccccccccChhhhccccccCcccC--CceEEEeccCCCCChhhcccchhhhcccccccccccC
Confidence 3568999999999999999999999998864211 0011 12222211 0112211221110 11224
Q ss_pred eEEEEecCeeeecceeeecCCCCceeEEEEEEEeeeCCCCeEEEEEEEecCCCCcccccchhhhhhh--hhhhhHHhHHH
Q 039074 283 NFLRFEAPCVLQNNRELVDSKTGEKHYFTGLFLCRPTGQGKSMLIVRFGATKRSPLAKLFPKWYFHQ--NASKVFEQDMG 360 (534)
Q Consensus 283 ~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trl~~~~~~~~~~~~~~~~p~w~~h~--~~~~Vl~eD~~ 360 (534)
....+++||+++... . . ...++.++|+++++|++.+++.........+....++... ....|++||+.
T Consensus 81 ~~~~~~fPn~~~~~~-----~----~-~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ED~~ 150 (188)
T cd00680 81 YLYLYLFPNLMIGLY-----P----D-SLQVQQFVPIGPNKTRLEVRLYRPKDEDAREEFDAELESLAGILRQVLDEDIE 150 (188)
T ss_pred eEEEEECCcEeeeec-----C----C-EEEEEEEEecCCCcEEEEEEEEEecccccchhhHHHHHHhHHHHHHHHHHHHH
Confidence 467889999986432 1 1 3355667899999999988877654432112223333322 46789999999
Q ss_pred HHHHHHHhhhhcCCCccccccccCcCcHHHHHHHHHHHHh
Q 039074 361 FLSSQNEVLMKETVPTKELYLNLRSSDTWVAEYRKWMDKV 400 (534)
Q Consensus 361 iL~~Qe~~l~~~~~~~k~~y~~~~~aD~~ViafRrWl~~~ 400 (534)
+++.||+++...... ...+ ...-..+..|++|+++.
T Consensus 151 ~~e~~Q~gl~s~~~~--~~~l--~~~E~~i~~f~~~~~~~ 186 (188)
T cd00680 151 LCERIQRGLRSGAFR--GGPL--SPLEEGIRHFHRWLRRA 186 (188)
T ss_pred HHHHHhccccCCcCC--CCCC--CcccccHHHHHHHHHHh
Confidence 999999999764321 1122 22246789999999875
No 46
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=99.44 E-value=8.2e-13 Score=125.34 Aligned_cols=88 Identities=17% Similarity=0.229 Sum_probs=70.9
Q ss_pred CCCCcEEEE-EcCEEEEEEEecCCcE--EEEeCCCCCCCCccccCcccccEEEccCCCeEEecCCceeecCCCCCCCCCC
Q 039074 93 PDDAPLGLT-VFDQQIVLYKDGNGEL--RCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIP 169 (534)
Q Consensus 93 ~~~~~~~~~-l~g~~lvv~r~~~G~~--~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~ 169 (534)
+++.+..+. +.|.+.++.+..+|++ +|+++.|||.|++|+.+..+ +.++||+|||+||.+|+.+..|.
T Consensus 73 ~~g~~~~v~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~gc~l~~~~~~-~~~~CP~Hgs~Fd~tG~~~~gPa-------- 143 (178)
T PRK13474 73 PAGDRSLVQGLKGDPTYLVVEEDGTIASYGINAVCTHLGCVVPWNSGE-NKFQCPCHGSQYDATGKVVRGPA-------- 143 (178)
T ss_pred CCCCcEEEEEcCCCeEEEEEeCCCEEEEEEecCCCCCCCCccccccCC-CEEEecCcCCEECCCCCCccCCC--------
Confidence 556666665 6777744444458888 67799999999999988754 59999999999999999887653
Q ss_pred ccCccceEEEEEecCeEEEEc
Q 039074 170 RSACVRTYEVKESQGVVWVWM 190 (534)
Q Consensus 170 ~~~~l~~~pv~~~~G~Vwv~~ 190 (534)
...|+.|+|++++|.|+|.+
T Consensus 144 -~~~L~~y~v~v~~g~v~v~~ 163 (178)
T PRK13474 144 -PLSLALVHVTVEDDKVLFSP 163 (178)
T ss_pred -CCCCCeEeEEEECCEEEEEE
Confidence 35699999999999999977
No 47
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.31 E-value=3e-11 Score=115.54 Aligned_cols=170 Identities=11% Similarity=0.017 Sum_probs=96.2
Q ss_pred eEEEeecChhhhcccCCCCccCccccCCcccccccccCC----Cc-e-EEEEeecc---CccccccCC--CCC--CCCCe
Q 039074 217 TIHELPYDHSILLENLMDPAHIPISHDRTDWTAKREDAQ----PL-G-FEVTERTD---RGFAGRWGK--EKD--EPLPN 283 (534)
Q Consensus 217 ~~~~~~~~~~~~~EN~lD~~H~~~~H~~~~~~~~r~~~~----p~-~-~~v~~~~~---~gf~~~~~~--~~~--~~~~~ 283 (534)
...+++||||+++||++|+||++++|+++.......+.. .. . +....... ......... ... .....
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (190)
T cd08885 4 EEEVWDTNWKVLAENFMEGYHLPGLHPGTLHPFMPAELSYFRPEDGRGFTRHKGTKHFNETIEPAHPPNPGLTEEWRRRL 83 (190)
T ss_pred eeeeccCCchhhHhhcCccccccccccchhhccCchhhcccccCCCcceeeeecccccccCccccCCCCCCCChhhhcce
Confidence 356789999999999999999999999875311110000 00 0 10000000 000000000 000 11234
Q ss_pred EEEEecCeeeecceeeecCCCCceeEEEEEEEeeeCCCCeEEEEEEEecCCCCcccccchhhhhh--hhhhhhHHhHHHH
Q 039074 284 FLRFEAPCVLQNNRELVDSKTGEKHYFTGLFLCRPTGQGKSMLIVRFGATKRSPLAKLFPKWYFH--QNASKVFEQDMGF 361 (534)
Q Consensus 284 ~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trl~~~~~~~~~~~~~~~~p~w~~h--~~~~~Vl~eD~~i 361 (534)
...+++||+++... + + ...++...|+++++|++.+.+.......-......|... .....|++||+.+
T Consensus 84 ~~~~iFPN~~i~~~-----~-~----~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ED~~~ 153 (190)
T cd08885 84 VLFAIFPTHLLALT-----P-D----YVWWLSLLPEGAGRVRVRWGVLVAPEAADDPEAAEYIAELKALLDAINDEDRLV 153 (190)
T ss_pred EEEEECCcEEEEec-----C-C----eEEEEEEEecCCCeEEEEEEEEEcchhcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999987432 1 1 123445679999999987776544322100111123211 1345789999999
Q ss_pred HHHHHHhhhhcCCCccccccccCcCcHHHHHHHHHHHHh
Q 039074 362 LSSQNEVLMKETVPTKELYLNLRSSDTWVAEYRKWMDKV 400 (534)
Q Consensus 362 L~~Qe~~l~~~~~~~k~~y~~~~~aD~~ViafRrWl~~~ 400 (534)
++.+|+++...... ... +......+..|.+|+++.
T Consensus 154 ~e~~Q~Gl~S~~~~--~g~--l~~~E~~i~~fh~~l~~~ 188 (190)
T cd08885 154 VEGVQRGLGSRFAV--PGR--LSHLERPIWQFQRYLASR 188 (190)
T ss_pred HHHhcccccCCCCC--CCC--CCcccccHHHHHHHHHHH
Confidence 99999999764321 112 233588899999999874
No 48
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=99.25 E-value=2.7e-11 Score=114.64 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=78.0
Q ss_pred CcEEeeecCCCCCCCcEEEEEcCEEEEEEEe-c---------------------------------CCcEEEEeCCCCCC
Q 039074 82 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKD-G---------------------------------NGELRCYQDRCPHR 127 (534)
Q Consensus 82 ~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~-~---------------------------------~G~~~a~~d~CpHR 127 (534)
.|+.| .++||++++.+.+.+.|++|+|+|. . ++++.|+.+.|||.
T Consensus 40 ~~~~v-~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH~ 118 (174)
T TIGR01416 40 APTEV-DVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDALKALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTHL 118 (174)
T ss_pred CcEEE-EHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhhhccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCCC
Confidence 47888 7899999999999999999999985 1 48999999999999
Q ss_pred CCc-cccCccc-ccEEEccCCCeEEecCCceeecCCCCCCCCCCccCccceEEEEEecCe
Q 039074 128 LAK-LSEGQLI-DGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGV 185 (534)
Q Consensus 128 ga~-Ls~G~i~-~~~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~ 185 (534)
|+. +..+... .+.+.||+||++||.+|+.+..|. ...|..||++..++.
T Consensus 119 Gc~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa---------~~~L~~~~~~~~~~~ 169 (174)
T TIGR01416 119 GCIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPA---------PLNLPVPPYKFLSDT 169 (174)
T ss_pred CCccccccCCCCCCEEEeCCCCCEECCCCcEecCCC---------CCCCCCCCEEEcCCC
Confidence 965 4566554 578999999999999999887653 346889999886653
No 49
>cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of plant choline monooxygenase and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-
Probab=99.25 E-value=6.6e-11 Score=112.06 Aligned_cols=165 Identities=10% Similarity=0.111 Sum_probs=95.7
Q ss_pred EEEeecChhhhcccCCCCccCccccCCcccccccccCCCceEEEEeecc-CccccccCCC---CCCCCCeEEEEecCeee
Q 039074 218 IHELPYDHSILLENLMDPAHIPISHDRTDWTAKREDAQPLGFEVTERTD-RGFAGRWGKE---KDEPLPNFLRFEAPCVL 293 (534)
Q Consensus 218 ~~~~~~~~~~~~EN~lD~~H~~~~H~~~~~~~~r~~~~p~~~~v~~~~~-~gf~~~~~~~---~~~~~~~~~~F~~P~~~ 293 (534)
..++++|||+++||++|+||++++|+++......+ ...++..+... .++....... ..........+++||++
T Consensus 5 ~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~ 81 (175)
T cd08883 5 EYVIECNWKVYVDNYLEGYHVPFAHPGLAAVLDYA---TYRTELFEYVSLQSAPARAEEGSFFYRLGNAALYAWIYPNLM 81 (175)
T ss_pred EeeeecCceEEehhcCCcccCcccchhHHhhcccC---ceEEEEcCcEEEEEecccCCCCccccccCcCeEEEEECCCEe
Confidence 45789999999999999999999999886322111 11111111100 0111000000 01122345567899998
Q ss_pred ecceeeecCCCCceeEEEEEEEeeeCCCCeEEEEEEEecCCCCcccccchhhhhhhhhhhhHHhHHHHHHHHHHhhhhcC
Q 039074 294 QNNRELVDSKTGEKHYFTGLFLCRPTGQGKSMLIVRFGATKRSPLAKLFPKWYFHQNASKVFEQDMGFLSSQNEVLMKET 373 (534)
Q Consensus 294 ~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trl~~~~~~~~~~~~~~~~p~w~~h~~~~~Vl~eD~~iL~~Qe~~l~~~~ 373 (534)
+... ++ ...++.+.|++|++|++...+.........+ ..|........|++||..+++.+|+++...+
T Consensus 82 i~~~-----~~-----~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~ED~~i~e~vQ~Gl~S~~ 149 (175)
T cd08883 82 LNRY-----PP-----GMDVNVVLPLGPERCKVVFDYFVDDSDGSDE--AFIAESIESDRVQKEDIEICESVQRGLESGA 149 (175)
T ss_pred eeec-----CC-----eEEEEEEEeCCCCcEEEEEEEEEeccccchh--HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Confidence 7532 11 2244456799999999987765443221001 1121111156899999999999999997643
Q ss_pred CCccccccccCcCcHHHHHHHHHHHHh
Q 039074 374 VPTKELYLNLRSSDTWVAEYRKWMDKV 400 (534)
Q Consensus 374 ~~~k~~y~~~~~aD~~ViafRrWl~~~ 400 (534)
.. ...+ . ......+..|++|++++
T Consensus 150 ~~-~G~l-~-~~~E~~v~~Fh~~l~~~ 173 (175)
T cd08883 150 YD-PGRF-S-PKRENGVHHFHRLLAQA 173 (175)
T ss_pred CC-CCCC-C-CccchHHHHHHHHHHHh
Confidence 21 0111 1 12367888999999875
No 50
>cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.22 E-value=1e-10 Score=111.64 Aligned_cols=167 Identities=11% Similarity=0.044 Sum_probs=95.2
Q ss_pred eEEEeecChhhhcccCCCCccCccccCCcccccccccCCCceEEEEeecc-C----ccccccCCCCCCCCCeEEEEecCe
Q 039074 217 TIHELPYDHSILLENLMDPAHIPISHDRTDWTAKREDAQPLGFEVTERTD-R----GFAGRWGKEKDEPLPNFLRFEAPC 291 (534)
Q Consensus 217 ~~~~~~~~~~~~~EN~lD~~H~~~~H~~~~~~~~r~~~~p~~~~v~~~~~-~----gf~~~~~~~~~~~~~~~~~F~~P~ 291 (534)
...+++||||+++||++|+||++++|+++...... ....++..+... . ++.................+++||
T Consensus 4 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN 80 (182)
T cd08886 4 LTSEIKANWKNVVDNYLECYHCHTAHPDFVDSLDM---DTYKHTTHGNYSSQMANYGSAENSEYSVKPDADFAFYWLWPN 80 (182)
T ss_pred EEEEeecccEEEEecCCccccCcccChhHHhcccc---cccEEEecCcEEEEEeccccccccccccccCcceeEEEEeCC
Confidence 35678999999999999999999999988633111 111111111000 0 010000000001123345678899
Q ss_pred eeecceeeecCCCCceeEEEEEEEeeeCCCCeEEEEEEEecCCCCcccccchhhhhhhhhhhhH-HhHHHHHHHHHHhhh
Q 039074 292 VLQNNRELVDSKTGEKHYFTGLFLCRPTGQGKSMLIVRFGATKRSPLAKLFPKWYFHQNASKVF-EQDMGFLSSQNEVLM 370 (534)
Q Consensus 292 ~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trl~~~~~~~~~~~~~~~~p~w~~h~~~~~Vl-~eD~~iL~~Qe~~l~ 370 (534)
++++.. ++. . .+.++.+.|+++++|++...+.......-.. .+. .......|+ +||..+++.+|+++.
T Consensus 81 ~~i~~~-----~~~--~-~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~--~~~-~~~~~~~v~~~ED~~l~e~vQ~Gl~ 149 (182)
T cd08886 81 TMLNVY-----PGA--G-NMGVINIIPVDAETTLQHYDFYFRDEELTDE--EKE-LIEYYRQVLQPEDLELVESVQRGLK 149 (182)
T ss_pred EEEEee-----CCC--C-eEEEEEEEeCCCCeEEEEEEEEecCCCccHH--HHH-HHHHHHHhcchhhHHHHHHHhcccc
Confidence 987532 110 1 2345567899999999877665332211011 011 122455687 999999999999997
Q ss_pred hcCCCcccccccc-----CcCcHHHHHHHHHHHH
Q 039074 371 KETVPTKELYLNL-----RSSDTWVAEYRKWMDK 399 (534)
Q Consensus 371 ~~~~~~k~~y~~~-----~~aD~~ViafRrWl~~ 399 (534)
..... ...+.+ ......+..|.+|+++
T Consensus 150 S~~~~--~g~l~~~~~~~~~~E~~v~~fh~~l~~ 181 (182)
T cd08886 150 SRAFG--QGRIVVDPSGSGISEHAVHHFHGLVLE 181 (182)
T ss_pred cCCCC--CceeccCcccCCccchhHHHHHHHHhc
Confidence 64322 112211 1247788999999976
No 51
>cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.22 E-value=1.2e-10 Score=110.49 Aligned_cols=168 Identities=10% Similarity=0.138 Sum_probs=96.8
Q ss_pred eEEEeecChhhhcccCCCCccCccccCCcccccccccCCCceEEEEeecc-Ccc-----ccccC-CCC--C-CCCCeEEE
Q 039074 217 TIHELPYDHSILLENLMDPAHIPISHDRTDWTAKREDAQPLGFEVTERTD-RGF-----AGRWG-KEK--D-EPLPNFLR 286 (534)
Q Consensus 217 ~~~~~~~~~~~~~EN~lD~~H~~~~H~~~~~~~~r~~~~p~~~~v~~~~~-~gf-----~~~~~-~~~--~-~~~~~~~~ 286 (534)
...+++||||+++||++|+||++++|++++......+ ...++..+... .++ ..... ... . ........
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~--~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (185)
T cd08887 4 RRFDVAANWKLALDGFLEGYHFKVLHKNTIAPYFYDN--LSVYDAFGPHSRIVFPRKSIESLRDLPEDEWDLRRHLTVIY 81 (185)
T ss_pred eeeecCCCceEehhhcccccccchhchhhhcccccCC--ceEEeccCCeeeeecchhhHHHHhcCChhHCCccCCeeEEE
Confidence 3467999999999999999999999998863221111 11122111000 000 00000 000 0 00112344
Q ss_pred EecCeeeecceeeecCCCCceeEEEEEEEeeeCCCCeEEEEEEEecCCCCcccccchhhhhh-hhh-hhhHHhHHHHHHH
Q 039074 287 FEAPCVLQNNRELVDSKTGEKHYFTGLFLCRPTGQGKSMLIVRFGATKRSPLAKLFPKWYFH-QNA-SKVFEQDMGFLSS 364 (534)
Q Consensus 287 F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trl~~~~~~~~~~~~~~~~p~w~~h-~~~-~~Vl~eD~~iL~~ 364 (534)
+++||+++... + + ...++...|+++++|.+.+.+..............|... ... ..|++||..+++.
T Consensus 82 ~lFPN~~i~~~-----~-~----~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ED~~~~e~ 151 (185)
T cd08887 82 TLFPNVSLLVQ-----P-D----HLEIIQIEPGSPDRTRVTVYLLIPPPPDTEEARAYWDKNWDFLMAVVLDEDFEVAEE 151 (185)
T ss_pred EECCceEEEec-----C-C----eEEEEEEEcCCCCceEEEEEEEecCCCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 67899987432 1 1 234455679999999997776654433211111122211 122 5789999999999
Q ss_pred HHHhhhhcCCCccccccccCcCcHHHHHHHHHHHHh
Q 039074 365 QNEVLMKETVPTKELYLNLRSSDTWVAEYRKWMDKV 400 (534)
Q Consensus 365 Qe~~l~~~~~~~k~~y~~~~~aD~~ViafRrWl~~~ 400 (534)
+|+++...+.. ...+ ......+..|++|+++.
T Consensus 152 ~Q~Gl~s~~~~--~~~l--~~~E~~i~~fh~~~~~~ 183 (185)
T cd08887 152 IQRGLASGAND--HLTF--GRNESALQHFHRWLERA 183 (185)
T ss_pred HhhhhhcCCCC--ceEe--ecCCHHHHHHHHHHHHH
Confidence 99999764322 1222 34688899999999874
No 52
>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols []. The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor []. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [].; GO: 0005506 iron ion binding, 0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, 0051537 2 iron, 2 sulfur cluster binding, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1WQL_A 3EN1_A 3EQQ_A 2CKF_A 2BMR_A 2BMQ_A 2BMO_A 2GBW_E 2GBX_C 2XRX_A ....
Probab=99.15 E-value=1.5e-11 Score=117.32 Aligned_cols=169 Identities=14% Similarity=0.115 Sum_probs=96.5
Q ss_pred EEeecChhhhcccCCCCccCccccCCcccccccccCC---CceEEEEeeccCcc------------ccccCC--------
Q 039074 219 HELPYDHSILLENLMDPAHIPISHDRTDWTAKREDAQ---PLGFEVTERTDRGF------------AGRWGK-------- 275 (534)
Q Consensus 219 ~~~~~~~~~~~EN~lD~~H~~~~H~~~~~~~~r~~~~---p~~~~v~~~~~~gf------------~~~~~~-------- 275 (534)
.+++||||+++||++|+||++++|+++.......+.. ...++.......+. ......
T Consensus 12 ~~~~~NWK~~~EN~~e~YH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (209)
T PF00848_consen 12 YEVDCNWKLAVENFLEGYHVPFLHPSTLGFFDPSNDEQAEIASVEFFGGHGSVWAGRMREEPQPEPSERRAWKGRPFPPG 91 (209)
T ss_dssp HHESS-HHHHHHHHHHCTTHHHHTHHHHHHHSCTTGGHHEEEEEEEESSTCEEETHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred EEecccceEHHHhCcccccccccccchhhhhhccccccccccccccccccccccccccccccccccchhhhhhhhhcccc
Confidence 4589999999999999999999999874322222111 01122211111111 000000
Q ss_pred -CCCCCCCeEEEEecCeeeecceeeecCCCCceeEEEEEEEeeeCCCCeEEEEEEEecCCCCcccccchhhhhhhhhh--
Q 039074 276 -EKDEPLPNFLRFEAPCVLQNNRELVDSKTGEKHYFTGLFLCRPTGQGKSMLIVRFGATKRSPLAKLFPKWYFHQNAS-- 352 (534)
Q Consensus 276 -~~~~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trl~~~~~~~~~~~~~~~~p~w~~h~~~~-- 352 (534)
...........+++||+++... +++. .++...|++|++|++.................+.+......
T Consensus 92 ~~~~~~~~~~~~~iFPn~~i~~~-----~~~~-----~~~~~~P~~p~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (209)
T PF00848_consen 92 LPDDQRMGYRNYVIFPNLSIIVY-----PDHF-----TVRTIIPIGPDRTEVWSWWFVPKDEGAPPEFREARIRNWDRFF 161 (209)
T ss_dssp HHHHHHTSEEEEEETTTEEEEE------TTTT-----EEEEEEEESTTEEEEEEEEEEETT--STHHHHHHHHHHHHHHH
T ss_pred ccccccccccceeeCCCEEEEec-----cccc-----EEEEEEECCCCeEEEEEEEEEeCCcccchhhHHHHHHHHHhcC
Confidence 0001234567899999987521 2221 24456799999999987776654421111011111111111
Q ss_pred hhHHhHHHHHHHHHHhhhhcCCCccccccccCcCcHHHHHHHHHHHHh
Q 039074 353 KVFEQDMGFLSSQNEVLMKETVPTKELYLNLRSSDTWVAEYRKWMDKV 400 (534)
Q Consensus 353 ~Vl~eD~~iL~~Qe~~l~~~~~~~k~~y~~~~~aD~~ViafRrWl~~~ 400 (534)
.|+.||+.+++.||+.+...+.. +..+. ...+..|..|++|++++
T Consensus 162 ~~~~ED~~~~e~~Q~gl~s~~~~-~~~~~--~~~E~~v~~f~~~~~~~ 206 (209)
T PF00848_consen 162 GVFAEDIEIVERQQRGLRSRGFD-PGRLS--GTSERGVRHFHRWWRRY 206 (209)
T ss_dssp STHHHHHHHHHHHHHHTTSSTSC-TSEES--SCSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCCC-CCCCC--CcCCHHHHHHHHHHHHH
Confidence 19999999999999999774431 22222 35799999999999875
No 53
>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.14 E-value=7.2e-10 Score=107.73 Aligned_cols=169 Identities=10% Similarity=0.021 Sum_probs=96.0
Q ss_pred eEEEeecChhhhcccCCCCccCccccCCccc-ccccccCCCc-------eEEEE---------eeccCcccc--ccCCCC
Q 039074 217 TIHELPYDHSILLENLMDPAHIPISHDRTDW-TAKREDAQPL-------GFEVT---------ERTDRGFAG--RWGKEK 277 (534)
Q Consensus 217 ~~~~~~~~~~~~~EN~lD~~H~~~~H~~~~~-~~~r~~~~p~-------~~~v~---------~~~~~gf~~--~~~~~~ 277 (534)
....++||||+++||++|+||++++|+++.. ....+..... .+... ..+..+... ......
T Consensus 14 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 93 (205)
T cd08884 14 ISYEVAANWKLVVENYRECYHCAGVHPELARSLSEFDDGGNPDPEAGGADFRGRRGPLRGGAESFTMDGKAVAPPLPGLT 93 (205)
T ss_pred eEEEEccCceehhHhCcccccCccccHHHHhhcccccccccccccccccceeeecccccCCceeecCCCCcccCCCCCCC
Confidence 3567899999999999999999999998642 1111000000 00000 000000000 000000
Q ss_pred C-CCCCeEEEEecCeeeecceeeecCCCCceeEEEEEEEeeeCCCCeEEEEEEEecCCCCcccccchhhh-hhhhhhhhH
Q 039074 278 D-EPLPNFLRFEAPCVLQNNRELVDSKTGEKHYFTGLFLCRPTGQGKSMLIVRFGATKRSPLAKLFPKWY-FHQNASKVF 355 (534)
Q Consensus 278 ~-~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trl~~~~~~~~~~~~~~~~p~w~-~h~~~~~Vl 355 (534)
. ........++.||++++.. + . ...++.+.|+++++|++...+....... .+....|. .......|+
T Consensus 94 ~~~~~~~~~~~lfPN~~~~~~-----~----d-~~~~~~~~P~~p~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~ 162 (205)
T cd08884 94 EADDRGALYYTLYPNSFLHLH-----P----D-HVVTFRVLPLSPDETLVRCKWLVHPDAV-EGVDYDLDDLVEVWDATN 162 (205)
T ss_pred ccccCceEEEEeCCcEEEEEc-----C----C-EEEEEEEEeCCCCceEEEEEEEECCchh-cccccCHHHHHHHHHHHH
Confidence 0 1123456678999986432 1 1 2345567899999999987766543321 11001111 223456899
Q ss_pred HhHHHHHHHHHHhhhhcCCCccccccccCcCcHHHHHHHHHHHHh
Q 039074 356 EQDMGFLSSQNEVLMKETVPTKELYLNLRSSDTWVAEYRKWMDKV 400 (534)
Q Consensus 356 ~eD~~iL~~Qe~~l~~~~~~~k~~y~~~~~aD~~ViafRrWl~~~ 400 (534)
+||..+++.+|+++...... .-.+ ......+..|.+|+.+.
T Consensus 163 ~ED~~i~e~vQ~Gl~S~~~~--~g~l--~~~E~~v~~F~~~~~~~ 203 (205)
T cd08884 163 RQDWAICERNQRGVNSPAYR--PGPY--SPMEGGVLAFDRWYLER 203 (205)
T ss_pred HHHHHHHHHhcccccCCCcC--CCCc--CCccHHHHHHHHHHHHH
Confidence 99999999999999764321 1112 23468899999999864
No 54
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=98.84 E-value=8.2e-09 Score=96.46 Aligned_cols=67 Identities=12% Similarity=0.210 Sum_probs=52.3
Q ss_pred CCcEEEEeCCCCCCCCccc---------------cCcccccEEEccCCCeEEec-CCc-eeecCCCCCCCCCCccCccce
Q 039074 114 NGELRCYQDRCPHRLAKLS---------------EGQLIDGRLECLYHGWQFEG-EGK-CVKIPQLPADAKIPRSACVRT 176 (534)
Q Consensus 114 ~G~~~a~~d~CpHRga~Ls---------------~G~i~~~~l~CpyHGW~Fd~-~G~-c~~iP~~~~~~~~~~~~~l~~ 176 (534)
+|+++|++++|||+|++|. +|..+++.|.||+|||+||. +|. .+..| ....|..
T Consensus 74 ~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GP---------A~~pLp~ 144 (171)
T cd03475 74 NKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGP---------APRPLPA 144 (171)
T ss_pred CCEEEEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCC---------CCCCcCE
Confidence 6899999999999999775 35566889999999999998 564 44323 2345889
Q ss_pred EEEEEec--CeEEEE
Q 039074 177 YEVKESQ--GVVWVW 189 (534)
Q Consensus 177 ~pv~~~~--G~Vwv~ 189 (534)
|++++++ |.||+-
T Consensus 145 ~~L~~d~~~d~iyAv 159 (171)
T cd03475 145 VILEYDSSTDDLYAV 159 (171)
T ss_pred eEEEEeCCCCcEEEE
Confidence 9998884 778863
No 55
>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium. The catalytic domain is found C-termnial to the iron-sulphur-binding Rieske domain and is composed of antiparallel beta sheets and alpha helices []. It is part of a much larger superfamily of lipid binding domains which form a common fold that works as a versatile scaffold for binding bulky ligands [].; PDB: 1Z03_D 1Z01_E 1Z02_F 2DE6_A 2DE7_C 1WW9_A 2DE5_C 3GKQ_F 3GCF_L.
Probab=98.52 E-value=4.4e-07 Score=88.08 Aligned_cols=186 Identities=18% Similarity=0.221 Sum_probs=97.1
Q ss_pred cccCCCceeeeeEEEeecChhhhcccCCCCccCccccCCcccccccccCCCce--------E-EEEe--eccCcccccc-
Q 039074 206 NFARPGFQDVSTIHELPYDHSILLENLMDPAHIPISHDRTDWTAKREDAQPLG--------F-EVTE--RTDRGFAGRW- 273 (534)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~EN~lD~~H~~~~H~~~~~~~~r~~~~p~~--------~-~v~~--~~~~gf~~~~- 273 (534)
.+.+++.......+.+.+||...+||.+|+.|+ |+|..+...-..+-+-|+. + ++.+ ..+.|+....
T Consensus 17 ~fld~~~~~~g~~~~~~~NWR~a~ENGfD~~H~-fiHk~s~~v~~~D~~lplG~~p~d~~~~t~~v~d~~gPKG~~~~~~ 95 (240)
T PF11723_consen 17 GFLDDDIVIFGMHREINANWRLAAENGFDPGHI-FIHKDSIWVHANDWALPLGFRPTDSDGMTKVVEDEDGPKGVMDRLT 95 (240)
T ss_dssp TTTSTTEEEEEEEEEESS-HHHHHHHHT-TTGG-GGGTT-HHHHHTTBEE-SEEEESSCCCEEEEEC-STSS-EEEE-CH
T ss_pred cccCCcceEEeeeeeccccchhhhhhCcCcceE-EEecCcceEEecceecccccccCCcccceEEEecCCCCceeeeccc
Confidence 455666665556788999999999999999998 9999653111110000111 1 1111 1222332110
Q ss_pred -------C---CCC--------CCCCCeEEEEecCeeeecceeeecCCCCceeEEEEEEEeeeCCCCeEEEEEEEecCCC
Q 039074 274 -------G---KEK--------DEPLPNFLRFEAPCVLQNNRELVDSKTGEKHYFTGLFLCRPTGQGKSMLIVRFGATKR 335 (534)
Q Consensus 274 -------~---~~~--------~~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trl~~~~~~~~~ 335 (534)
. .+. .......+....|++....- + +. ..++..-..+|++..+.+++......-.
T Consensus 96 ~~~~pi~e~~i~g~~~~~~~~~~~~~~~~iSiwlPgVL~V~~-~---P~---p~~~qyEwYVPID~~~h~Y~q~l~~~~~ 168 (240)
T PF11723_consen 96 EHYEPIFENEIDGEKVRNGNTNPVAVAMRISIWLPGVLMVEN-W---PY---PDFTQYEWYVPIDEDTHRYFQLLGKVCP 168 (240)
T ss_dssp HHEEEESEEEETTEEEEE-BESSBE--SEEEEETTTEEEEES-----SS---TTEEEEEEEEEEETTEEEEEEEEEEE-S
T ss_pred ccceEEEecccCCceeecCCCCCceeEEEeeEeccceeeccc-C---CC---CCeeEEEEEEEecccceeeEeEEeeecC
Confidence 0 000 00112345555666654221 1 10 1233433448999998887433332211
Q ss_pred Cc-----cc-ccchhhhhhhhhhhhHHhHHHHHHHHHHhhhhcCCCccccccccCcCcHHHHHHHHHHHHhCCC
Q 039074 336 SP-----LA-KLFPKWYFHQNASKVFEQDMGFLSSQNEVLMKETVPTKELYLNLRSSDTWVAEYRKWMDKVGHG 403 (534)
Q Consensus 336 ~~-----~~-~~~p~w~~h~~~~~Vl~eD~~iL~~Qe~~l~~~~~~~k~~y~~~~~aD~~ViafRrWl~~~~~g 403 (534)
.. +. ++...|. -...+.+.++|+.+.++.|+..+...++.++.. -+.|..+++|||...++..|
T Consensus 169 t~ee~~~f~~~f~~~~~-~~~l~gFN~~D~wAREamq~fY~d~~Gw~~E~L---~~~D~sIi~WRkLas~~nrg 238 (240)
T PF11723_consen 169 TEEERKAFEYEFEEQWK-PLALHGFNDDDIWAREAMQPFYADDTGWDREQL---FEPDKSIIAWRKLASEHNRG 238 (240)
T ss_dssp SHHHHHHHHHHHHHTHH-HHTTTTTTHHHHHHHHHHHHHHHTSHHHHH-------GGGHHHHHHHHHHHHH-SE
T ss_pred CHHHHHHHHHHHHHHhH-HhhccCCCchhHHHHHHhhhhhhccCCCCHHHh---cCcchhHHHHHHHHHHhhcc
Confidence 10 00 1111232 235677889999999999998877544434332 34699999999999999765
No 56
>cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp. strain P2 and related proteins. C-terminal catalytic domain of the large subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate 1-hydroxylase complex from Sphingomonas sp. strain P2, and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c is one of three known isofunctional salicylate 1-hydroxylase complexes in strain P2, involved in phenanthrene degradation, which catalyze the monooxygenation of salicylate, the metabolite of phenanthene degradation, to produce catechol. This complex prefers salicylate over other substituted salicylates; the other two salicylate 1-hydroxylases have different substrate preferences. RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative deg
Probab=98.48 E-value=9.6e-07 Score=87.05 Aligned_cols=143 Identities=13% Similarity=0.106 Sum_probs=77.3
Q ss_pred EEeecChhhhcccCCCCccCccccC--CcccccccccCCCceEEEEeeccC-------c-------------ccccc-CC
Q 039074 219 HELPYDHSILLENLMDPAHIPISHD--RTDWTAKREDAQPLGFEVTERTDR-------G-------------FAGRW-GK 275 (534)
Q Consensus 219 ~~~~~~~~~~~EN~lD~~H~~~~H~--~~~~~~~r~~~~p~~~~v~~~~~~-------g-------------f~~~~-~~ 275 (534)
.++++|||+.+||+.|+||++++|. .+++....++.....++....... + +...+ ..
T Consensus 6 ~~~~~nwk~~~~~~~~~yh~~~~h~~~~t~g~~~~~~~~~~~~~~~g~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (222)
T cd08880 6 QRIPGNWKLYAENVKDPYHASLLHLFFVTFGLWRADQKSSIIDDEHGRHSVMTSTKSGDDEAAEKDSEEIRSFRDDFTLL 85 (222)
T ss_pred eecCCCcHHHHHhccCcchHHHHhhhheeeecccCCCCCceEEecCCCceEEEEecCCCcccccchHHHHHHHhhccccC
Confidence 4689999999999999999999999 555322112211011111111000 0 00000 00
Q ss_pred CC---------CCCCCeEEEEecCeeeecceeeecCCCCceeEEEEEEEeeeCCCCeEEEEEEEecCCCCcccccchhhh
Q 039074 276 EK---------DEPLPNFLRFEAPCVLQNNRELVDSKTGEKHYFTGLFLCRPTGQGKSMLIVRFGATKRSPLAKLFPKWY 346 (534)
Q Consensus 276 ~~---------~~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trl~~~~~~~~~~~~~~~~p~w~ 346 (534)
.. ..........++||+++... . . ...+....|++|++|++.+.+....... .+....|.
T Consensus 86 d~~~~~~~~e~~~~~~~~~~~iFPNl~l~~~-----~----~-~l~v~~~~P~gpd~t~~~~~~~~~~~~~-~e~~~~~~ 154 (222)
T cd08880 86 DPSLLDGRAEFDDDITLVIQSIFPSLVVQQI-----Q----N-TLAVRHIIPKGPDSFELVWTYFGYEDDD-EEMTRLRL 154 (222)
T ss_pred CHHHHhhhHhhcCCCceEEEEECCCEEEecc-----C----C-cEEEEEEEecCCCeEEEEEEEEEecCCC-HHHHHHHH
Confidence 00 01112345668899986422 1 1 2234456799999999876655332111 11111222
Q ss_pred hhhh----hhhhHHhHHHHHHHHHHhhhhc
Q 039074 347 FHQN----ASKVFEQDMGFLSSQNEVLMKE 372 (534)
Q Consensus 347 ~h~~----~~~Vl~eD~~iL~~Qe~~l~~~ 372 (534)
.+.. ...|.+||..+++..|+.+...
T Consensus 155 ~~~~~~gp~g~v~~ED~ei~e~vQ~Gl~s~ 184 (222)
T cd08880 155 RQANLVGPAGFVSMEDGEAIEFVQRGVEGD 184 (222)
T ss_pred HHhcccCCcCCCccchHHHHHHhCchhcCC
Confidence 2111 2358889999999999998753
No 57
>cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas fluorescens MupW and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-l
Probab=98.45 E-value=1.6e-06 Score=86.61 Aligned_cols=104 Identities=12% Similarity=0.062 Sum_probs=61.4
Q ss_pred EEEEecCeeeecceeeecCCCCceeEEEEEEEeee--CCCCeEEEEEEEecCCCCcccccc-----hhhhhh-hh--hhh
Q 039074 284 FLRFEAPCVLQNNRELVDSKTGEKHYFTGLFLCRP--TGQGKSMLIVRFGATKRSPLAKLF-----PKWYFH-QN--ASK 353 (534)
Q Consensus 284 ~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~P--v~pg~trl~~~~~~~~~~~~~~~~-----p~w~~h-~~--~~~ 353 (534)
...+++||+++... +++ ..++...| ++|++|.+...+............ ..|-.. .. ...
T Consensus 128 ~~~~lFPN~~i~~~-----p~~-----~~~~r~~P~~~dpd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (243)
T cd08882 128 IHYTLFPNFTILPG-----PDG-----LLVYRFRPHGDDPEKCIFDIWSLERYPEGAEPPEPPEEHEVFSDAPELGGLGL 197 (243)
T ss_pred CeEEECCCccccCC-----CCc-----cEEEEeecCCCCCCeEEEEEEEEEECCCCCCCCCCCccccccccccccccccc
Confidence 45678899986432 111 23445568 699999986665433211100000 112111 11 368
Q ss_pred hHHhHHHHHHHHHHhhhhcCCCccccccccCcCcHHHHHHHHHHHHh
Q 039074 354 VFEQDMGFLSSQNEVLMKETVPTKELYLNLRSSDTWVAEYRKWMDKV 400 (534)
Q Consensus 354 Vl~eD~~iL~~Qe~~l~~~~~~~k~~y~~~~~aD~~ViafRrWl~~~ 400 (534)
|++||+.+++.+|+++...+.. ...+. ..-...|..|++|++++
T Consensus 198 V~~ED~~~~e~vQ~Gl~S~~~~--~~~l~-~~EE~~I~~FH~~l~~~ 241 (243)
T cd08882 198 VLDQDFSNLPAVQKGMHSRGFG--GLVLA-NQEESRIRHFHEVLDDY 241 (243)
T ss_pred hhHhHHHHHHHHHHHhccCCCC--CcccC-chHHHHHHHHHHHHHHH
Confidence 9999999999999999765422 22221 11237899999999986
No 58
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=98.32 E-value=9.3e-07 Score=84.08 Aligned_cols=76 Identities=20% Similarity=0.358 Sum_probs=58.1
Q ss_pred CEEEEEEEecCC-----cEEEEeCCCCCCCCcccc-CcccccEEEccCCCeEEecCCceeecCCCCCCCCCCccCccceE
Q 039074 104 DQQIVLYKDGNG-----ELRCYQDRCPHRLAKLSE-GQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTY 177 (534)
Q Consensus 104 g~~lvv~r~~~G-----~~~a~~d~CpHRga~Ls~-G~i~~~~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~l~~~ 177 (534)
+.+....++.++ +|.|+...|.|.|+.... +...++.+.||+||.+||.+|+.+..|. ...|..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd~~g~vv~GPA---------~~~L~~~ 153 (177)
T COG0723 83 GPKGGVTRDGDGGVGNKEIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPDGGVVKGPA---------PRPLPIP 153 (177)
T ss_pred cccccceecccCCCCCccEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEcCCCCeeCCCC---------CCCcCCc
Confidence 344445554443 566999999999999998 6778899999999999999999877663 2457788
Q ss_pred EEEEecCeEEE
Q 039074 178 EVKESQGVVWV 188 (534)
Q Consensus 178 pv~~~~G~Vwv 188 (534)
+++..++.+++
T Consensus 154 ~~~~~~d~~~~ 164 (177)
T COG0723 154 PLEYDSDKLYL 164 (177)
T ss_pred eEEEeCCceEE
Confidence 88777774443
No 59
>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). This domain binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents form the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are th
Probab=98.06 E-value=1.4e-05 Score=77.97 Aligned_cols=137 Identities=14% Similarity=0.000 Sum_probs=72.9
Q ss_pred EEEeecChhhhcccCC-CCccCccccCCcccccccccCCCceEEEEeeccCccccccC-CCCC---CCCCeEEEEecCee
Q 039074 218 IHELPYDHSILLENLM-DPAHIPISHDRTDWTAKREDAQPLGFEVTERTDRGFAGRWG-KEKD---EPLPNFLRFEAPCV 292 (534)
Q Consensus 218 ~~~~~~~~~~~~EN~l-D~~H~~~~H~~~~~~~~r~~~~p~~~~v~~~~~~gf~~~~~-~~~~---~~~~~~~~F~~P~~ 292 (534)
...++||||+++||++ |.||++++|..+...+...... .. .....|...... .+-. ........+++||+
T Consensus 10 ~~~~~~NWK~~~en~~~d~yH~~~~H~~~~~~~~~~~~~--~~---~~~~~g~~~~~~~~GHg~~~~~~~~~~~~iFPN~ 84 (206)
T cd08881 10 KWVIKANWKLAAENFAGDGYHTGTTHASALEAGLPPDAA--DL---PPIDLGLQFTAPWHGHGLGFFLDSPQHGTIFPNL 84 (206)
T ss_pred EEEecCcceehhhccccccccchhhhHHHHHhhCCcccc--cC---CCCCCCcEEEeCCCCeEEEEeccCcceeeECCcc
Confidence 4578999999999999 9999999999875332221100 00 000111110000 0000 00022345677988
Q ss_pred eecceeeecCCCCceeEEEEEEEeeeCCCCeEEEEEEEecCCCCcccccchhhhh---hhh--hhhhHHhHHHHHHHHHH
Q 039074 293 LQNNRELVDSKTGEKHYFTGLFLCRPTGQGKSMLIVRFGATKRSPLAKLFPKWYF---HQN--ASKVFEQDMGFLSSQNE 367 (534)
Q Consensus 293 ~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trl~~~~~~~~~~~~~~~~p~w~~---h~~--~~~Vl~eD~~iL~~Qe~ 367 (534)
.+.... ...+...+|++|++|.+...+...+...- ....++.. ..+ .-.+-.||..+++.+|+
T Consensus 85 ~~~~~~-----------~~~~r~~~P~gp~~tev~~~~~~~kda~e-~~~~~~~~~~~~~~gpaG~~~~DD~e~~e~~Q~ 152 (206)
T cd08881 85 SFLPGY-----------FNTLRVWHPRGPDETEVWTWTLVDKDAPE-EVKDRVRRQYTRTFGPAGTFEQDDGENWEEITR 152 (206)
T ss_pred hhhhcc-----------CceEEEEEeCCCCeEEEEEEEEecCCCCH-HHHHHHHHHHHhccCCcCCCcCchHHHHHHHHH
Confidence 764320 12233347999999998666655443321 11111211 000 01234599999999999
Q ss_pred hhhh
Q 039074 368 VLMK 371 (534)
Q Consensus 368 ~l~~ 371 (534)
.+..
T Consensus 153 g~~~ 156 (206)
T cd08881 153 VARG 156 (206)
T ss_pred hhcc
Confidence 8763
No 60
>cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of anthranilate 1,2-dioxygenase (AntDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are
Probab=97.95 E-value=1.9e-05 Score=78.58 Aligned_cols=29 Identities=24% Similarity=0.147 Sum_probs=26.2
Q ss_pred EEEeecChhhhcccCCCCccCccccCCcc
Q 039074 218 IHELPYDHSILLENLMDPAHIPISHDRTD 246 (534)
Q Consensus 218 ~~~~~~~~~~~~EN~lD~~H~~~~H~~~~ 246 (534)
...++||||+.+||+.|.||++++|..+.
T Consensus 5 ~~~~~~nWK~~~en~~d~yH~~~~H~~~~ 33 (237)
T cd08879 5 RYRYRGNWKLQLENGTDGYHPPFVHASYV 33 (237)
T ss_pred EEEeeceEEEEeeecCccccCccccHHHH
Confidence 34689999999999999999999998765
No 61
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=97.93 E-value=1.5e-05 Score=75.17 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=57.9
Q ss_pred cCCCCCCCcEEEEEcCEEEEE--------------------------EEecCCcEEEEeCCCCCCCCccccCcccccEEE
Q 039074 89 TKDVPDDAPLGLTVFDQQIVL--------------------------YKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLE 142 (534)
Q Consensus 89 ~~dl~~~~~~~~~l~g~~lvv--------------------------~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~ 142 (534)
..|+|+++-.++.-.|+++++ =|.++-+|.++..+|.|.|+-.-....+.|..-
T Consensus 92 l~~IPeGk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq~d~~rvk~~ewl~~igVCThLGCVp~~~AGd~gg~~ 171 (210)
T KOG1671|consen 92 LSDIPEGKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQDDVDRVKKPEWLVVIGVCTHLGCVPIANAGDYGGYY 171 (210)
T ss_pred eecCCCCCCcceeccCCceEEeeccccccccccccchhhccCchhhhhhccCcceEEEEeeeccccccccccccccCcee
Confidence 345566555666666666665 255556799999999999998887777778899
Q ss_pred ccCCCeEEecCCceeecCC
Q 039074 143 CLYHGWQFEGEGKCVKIPQ 161 (534)
Q Consensus 143 CpyHGW~Fd~~G~c~~iP~ 161 (534)
||+||..||..|+..+.|.
T Consensus 172 CPCHGSHYdasGRIrkGPA 190 (210)
T KOG1671|consen 172 CPCHGSHYDASGRIRKGPA 190 (210)
T ss_pred cccccccccccCceecCCC
Confidence 9999999999999999884
No 62
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=97.62 E-value=0.00011 Score=74.72 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=48.4
Q ss_pred CCcEEEEeCCCCCCCCccccC----------------------------ccc---ccEEEccCCCeEEecC--CceeecC
Q 039074 114 NGELRCYQDRCPHRLAKLSEG----------------------------QLI---DGRLECLYHGWQFEGE--GKCVKIP 160 (534)
Q Consensus 114 ~G~~~a~~d~CpHRga~Ls~G----------------------------~i~---~~~l~CpyHGW~Fd~~--G~c~~iP 160 (534)
++.+.||+..|+|.|++++.= .-. .+.+.||+||.+||.+ |+.+..|
T Consensus 175 ~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~GP 254 (321)
T TIGR03171 175 NKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLTGP 254 (321)
T ss_pred CCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeCCC
Confidence 467999999999999988321 111 1489999999999983 5777766
Q ss_pred CCCCCCCCCccCccceEEEEEe--cCeEEEEc
Q 039074 161 QLPADAKIPRSACVRTYEVKES--QGVVWVWM 190 (534)
Q Consensus 161 ~~~~~~~~~~~~~l~~~pv~~~--~G~Vwv~~ 190 (534)
.. ..|..+++++. +|.|++--
T Consensus 255 A~---------rpLp~i~l~~d~~~~~l~AvG 277 (321)
T TIGR03171 255 TV---------RPLPAVILEWDSSTDYLYAIG 277 (321)
T ss_pred CC---------CCCCcceEEEeCCCCeEEEEe
Confidence 42 33666777665 57777643
No 63
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.52 E-value=0.0064 Score=65.26 Aligned_cols=39 Identities=36% Similarity=0.584 Sum_probs=35.0
Q ss_pred CCCCccccCcccccEEEccCCCeEEec-CCceeecCCCCC
Q 039074 126 HRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKIPQLPA 164 (534)
Q Consensus 126 HRga~Ls~G~i~~~~l~CpyHGW~Fd~-~G~c~~iP~~~~ 164 (534)
|.|+||..|-...|+++||+||.+|+. +|....-|....
T Consensus 1 hygapl~~g~~s~g~v~cpwhgacfn~~~gdiedfP~~~s 40 (478)
T KOG1336|consen 1 HYGAPLAKGVLSRGRVRCPWHGACFNLSTGDIEDFPGLDS 40 (478)
T ss_pred CCCcchhhccccCCcccccccceeecCCcCchhhCcCccc
Confidence 999999999778999999999999998 899888887543
No 64
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=73.24 E-value=19 Score=30.90 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=22.3
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 039074 454 RYFRHVIHCKGCSSVIKAFSTWKNSLSVVAAALTV 488 (534)
Q Consensus 454 Ry~~Ht~~C~sC~~Al~~~~~~~~~l~~~~~~~~~ 488 (534)
+|+..-+...+|++-++.++.+..++.++++++..
T Consensus 3 ~~~~y~~~a~~~q~~~~~~~~~~i~~~~~~a~i~~ 37 (112)
T PF14015_consen 3 QIDWYDKKARRAQRRYRRLRIASIILSVLGAVIPV 37 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455667777788888888776665544433
No 65
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=63.49 E-value=6.3 Score=32.70 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=25.6
Q ss_pred hhhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 039074 450 NLANRYFRHVIHCKGCSSVIKAFSTWKNSLS 480 (534)
Q Consensus 450 ~lldRy~~Ht~~C~sC~~Al~~~~~~~~~l~ 480 (534)
.-..+++.|...|+.|+..+...++++.++.
T Consensus 27 ~e~~~~e~HL~~C~~C~~e~~~~~~~~~~L~ 57 (84)
T TIGR02949 27 SDREQLRRHLEACPECLEEYGLEQAVKKLLK 57 (84)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999987777765554
No 66
>PF13490 zf-HC2: Putative zinc-finger; PDB: 2Z2S_F 2Q1Z_B 3HUG_T.
Probab=62.99 E-value=3.4 Score=28.21 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=14.7
Q ss_pred hhhhhhhhhccccchhHH
Q 039074 450 NLANRYFRHVIHCKGCSS 467 (534)
Q Consensus 450 ~lldRy~~Ht~~C~sC~~ 467 (534)
.--.|...|..+|++|+.
T Consensus 19 ~~~~~~~~HL~~C~~C~~ 36 (36)
T PF13490_consen 19 EERARLEAHLASCPSCRE 36 (36)
T ss_dssp HHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHcCHHhcC
Confidence 457899999999999984
No 67
>PRK10853 putative reductase; Provisional
Probab=62.55 E-value=4.8 Score=35.64 Aligned_cols=17 Identities=6% Similarity=0.206 Sum_probs=15.3
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|..+|++|++|++.++.
T Consensus 6 ~~~~C~t~rkA~~~L~~ 22 (118)
T PRK10853 6 GIKNCDTIKKARRWLEA 22 (118)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 67899999999999875
No 68
>PF09740 DUF2043: Uncharacterized conserved protein (DUF2043); InterPro: IPR018610 This entry consists of uncharacterised proteins of unknown function. They contain three conserved cysteines and a {CP}{y/l}{HG} motif.
Probab=61.98 E-value=4.2 Score=35.60 Aligned_cols=34 Identities=32% Similarity=0.574 Sum_probs=22.6
Q ss_pred CcEEEEeCCCCCCCCccccCccc--ccEEEccCCCeEEe
Q 039074 115 GELRCYQDRCPHRLAKLSEGQLI--DGRLECLYHGWQFE 151 (534)
Q Consensus 115 G~~~a~~d~CpHRga~Ls~G~i~--~~~l~CpyHGW~Fd 151 (534)
|+.--..-.| .|||-.|.+. .+.+.||+||=--+
T Consensus 63 g~~e~v~~~C---rAPL~~G~LC~RrD~~kCPfHG~IIp 98 (110)
T PF09740_consen 63 GEFEPVPHAC---RAPLPNGGLCPRRDRKKCPFHGKIIP 98 (110)
T ss_pred CccCcCchhh---cCCCCCCCcCCccCcccCCCCCcccC
Confidence 4444444445 4788888874 56889999984433
No 69
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=59.39 E-value=5.7 Score=34.67 Aligned_cols=17 Identities=12% Similarity=0.325 Sum_probs=15.3
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|..+|++|++|++.++.
T Consensus 5 ~~~~C~t~rkA~~~L~~ 21 (112)
T cd03034 5 HNPRCSKSRNALALLEE 21 (112)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 67899999999999886
No 70
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=59.27 E-value=5.8 Score=34.85 Aligned_cols=17 Identities=6% Similarity=0.059 Sum_probs=15.1
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|..+|++|++|++.++.
T Consensus 6 ~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 6 EKPGCANNARQKALLEA 22 (113)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 67899999999999875
No 71
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=57.64 E-value=6.1 Score=34.20 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=13.6
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|..+|++|++|++.++.
T Consensus 2 ~~~~C~t~rka~~~L~~ 18 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLEE 18 (110)
T ss_dssp E-TT-HHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 56799999999999986
No 72
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=56.52 E-value=7 Score=34.65 Aligned_cols=18 Identities=11% Similarity=0.318 Sum_probs=16.0
Q ss_pred hccccchhHHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFSTW 475 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~~ 475 (534)
|..+|.+|++|++.++.-
T Consensus 7 ~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 7 GNPNCSTCRKALAWLEEH 24 (117)
T ss_pred eCCCChHHHHHHHHHHHc
Confidence 778999999999999873
No 73
>PRK10026 arsenate reductase; Provisional
Probab=56.34 E-value=6.8 Score=35.92 Aligned_cols=17 Identities=12% Similarity=0.298 Sum_probs=15.1
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|-.+|++|++|++.++.
T Consensus 8 ~~p~Cst~RKA~~wL~~ 24 (141)
T PRK10026 8 HNPACGTSRNTLEMIRN 24 (141)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 66899999999999874
No 74
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=54.35 E-value=7.9 Score=33.45 Aligned_cols=17 Identities=12% Similarity=0.237 Sum_probs=15.1
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|...|++|++|++.++.
T Consensus 5 ~~~~C~~crka~~~L~~ 21 (105)
T cd03035 5 GIKNCDTVKKARKWLEA 21 (105)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 67799999999999875
No 75
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=51.99 E-value=9 Score=33.58 Aligned_cols=17 Identities=12% Similarity=0.325 Sum_probs=15.1
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|-.+|++|++|++.++.
T Consensus 5 ~~~~C~t~rkA~~~L~~ 21 (114)
T TIGR00014 5 HNPRCSKSRNTLALLED 21 (114)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 56799999999999876
No 76
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=48.14 E-value=11 Score=33.96 Aligned_cols=17 Identities=12% Similarity=0.442 Sum_probs=15.5
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|..+|++|++|++.++.
T Consensus 6 ~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 6 TISSCTSCKKAKTWLNA 22 (132)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 77899999999999876
No 77
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=46.01 E-value=13 Score=33.42 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=14.9
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|-.+|++|++|++.++.
T Consensus 7 ~~p~Cst~RKA~~~L~~ 23 (126)
T TIGR01616 7 EKPGCANNARQKAALKA 23 (126)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 55799999999999874
No 78
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=45.81 E-value=12 Score=33.79 Aligned_cols=30 Identities=23% Similarity=0.394 Sum_probs=25.9
Q ss_pred EEeCCCCCCCCccccCcccccEEEccCCCeEEe
Q 039074 119 CYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFE 151 (534)
Q Consensus 119 a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd 151 (534)
-+...||--|+||.+ .+|.+.||-||-++.
T Consensus 26 ML~~hCp~Cg~PLF~---KdG~v~CPvC~~~~~ 55 (131)
T COG1645 26 MLAKHCPKCGTPLFR---KDGEVFCPVCGYREV 55 (131)
T ss_pred HHHhhCcccCCccee---eCCeEECCCCCceEE
Confidence 356789999999998 789999999998766
No 79
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=44.86 E-value=14 Score=32.21 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=15.2
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|...|++|++|.+.++.
T Consensus 5 ~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 5 EYPKCSTCRKAKKWLDE 21 (111)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 56799999999999986
No 80
>PRK12559 transcriptional regulator Spx; Provisional
Probab=39.86 E-value=18 Score=32.61 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=15.0
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|..+|++|++|++.++.
T Consensus 6 ~~~~C~~crkA~~~L~~ 22 (131)
T PRK12559 6 TTASCASCRKAKAWLEE 22 (131)
T ss_pred eCCCChHHHHHHHHHHH
Confidence 56799999999999875
No 81
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=37.44 E-value=21 Score=31.16 Aligned_cols=17 Identities=12% Similarity=0.341 Sum_probs=15.2
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|...|+.|++|++.++.
T Consensus 6 ~~~~C~~c~ka~~~L~~ 22 (115)
T cd03032 6 TSPSCSSCRKAKQWLEE 22 (115)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 56899999999999986
No 82
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=35.36 E-value=24 Score=30.09 Aligned_cols=18 Identities=6% Similarity=0.108 Sum_probs=15.1
Q ss_pred hccccchhHHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFSTW 475 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~~ 475 (534)
|...|++|++|++.++..
T Consensus 5 ~~~~C~~c~ka~~~L~~~ 22 (105)
T cd02977 5 GNPNCSTSRKALAWLEEH 22 (105)
T ss_pred ECCCCHHHHHHHHHHHHc
Confidence 456899999999998874
No 83
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=35.05 E-value=2e+02 Score=24.39 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=23.6
Q ss_pred hhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039074 451 LANRYFRHVIHCKGCSSVIKAFSTWKNSLSVVAAALTVLAIL 492 (534)
Q Consensus 451 lldRy~~Ht~~C~sC~~Al~~~~~~~~~l~~~~~~~~~~a~~ 492 (534)
.++.|.+.-.+|+.+-..++.+..+-.++.++..+++++.++
T Consensus 3 ~~~~y~~~a~~~q~~~~~~~~~~i~~~~~~a~i~~l~~~~~~ 44 (112)
T PF14015_consen 3 QIDWYDKKARRAQRRYRRLRIASIILSVLGAVIPVLASLSGL 44 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666666666666666666666655555544444444443
No 84
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=34.97 E-value=24 Score=31.73 Aligned_cols=17 Identities=12% Similarity=0.303 Sum_probs=15.2
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|...|+.|++|++.++.
T Consensus 6 ~~~~C~~C~ka~~~L~~ 22 (131)
T PRK01655 6 TSPSCTSCRKAKAWLEE 22 (131)
T ss_pred eCCCChHHHHHHHHHHH
Confidence 67899999999999976
No 85
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=34.18 E-value=25 Score=30.69 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=15.2
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|...|++|++|++.++.
T Consensus 5 ~~~~C~~c~ka~~~L~~ 21 (117)
T TIGR01617 5 GSPNCTTCKKARRWLEA 21 (117)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 56789999999999987
No 86
>PF12266 DUF3613: Protein of unknown function (DUF3613); InterPro: IPR022053 This family of proteins is found in bacteria. Proteins in this family are typically between 94 and 126 amino acids in length.
Probab=30.00 E-value=90 Score=24.94 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=34.4
Q ss_pred hHHhHHHHHHHHHHhhhhcCCCccccccccCcCcHHHHHHHHHHHHhCCCCCCCCC
Q 039074 354 VFEQDMGFLSSQNEVLMKETVPTKELYLNLRSSDTWVAEYRKWMDKVGHGMPYHFG 409 (534)
Q Consensus 354 Vl~eD~~iL~~Qe~~l~~~~~~~k~~y~~~~~aD~~ViafRrWl~~~~~g~P~~~g 409 (534)
+-++=..+|..|..+..... ...|...+..-+.|.|||+.|..-.|.|++
T Consensus 14 ~g~~T~~~L~lQrsg~~As~------~~qp~~g~~a~layqRYL~SF~~~IPe~f~ 63 (67)
T PF12266_consen 14 VGDATRAWLALQRSGRAASP------PPQPMTGEEATLAYQRYLDSFKHPIPEFFE 63 (67)
T ss_pred ccHHHHHHHHHHHhcccccC------CCCCCchHHHHHHHHHHHHHccCCCchHhh
Confidence 44455567777877544310 111344688899999999999999998775
No 87
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=27.19 E-value=2.4e+02 Score=23.07 Aligned_cols=16 Identities=13% Similarity=-0.087 Sum_probs=7.5
Q ss_pred hhhhhhhhhccccchh
Q 039074 450 NLANRYFRHVIHCKGC 465 (534)
Q Consensus 450 ~lldRy~~Ht~~C~sC 465 (534)
.+-.|..++....++=
T Consensus 24 ~fa~~l~~~~~~~~~~ 39 (82)
T PF11239_consen 24 RFAARLRSGRPRRPSR 39 (82)
T ss_pred HHHHHhccCCCCCCch
Confidence 3444444544444443
No 88
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=26.50 E-value=16 Score=36.65 Aligned_cols=19 Identities=21% Similarity=0.761 Sum_probs=0.0
Q ss_pred hhhhhhhhhccccchhHHH
Q 039074 450 NLANRYFRHVIHCKGCSSV 468 (534)
Q Consensus 450 ~lldRy~~Ht~~C~sC~~A 468 (534)
++-++.|||++.|..|+.|
T Consensus 76 ~i~gk~~QhVVkC~~CnEA 94 (256)
T PF09788_consen 76 DIEGKMHQHVVKCSVCNEA 94 (256)
T ss_pred cccCccceeeEECCCCCcc
No 89
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=26.22 E-value=2e+02 Score=28.24 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=16.6
Q ss_pred hhhhhhhhhccccchhHHH
Q 039074 450 NLANRYFRHVIHCKGCSSV 468 (534)
Q Consensus 450 ~lldRy~~Ht~~C~sC~~A 468 (534)
=|++-|+.--..|++|++.
T Consensus 180 FLfnt~tnaLArCPHCrKv 198 (275)
T KOG4684|consen 180 FLFNTLTNALARCPHCRKV 198 (275)
T ss_pred eehhhHHHHHhcCCcccch
Confidence 4789999989999999875
No 90
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=26.05 E-value=17 Score=35.47 Aligned_cols=20 Identities=25% Similarity=0.720 Sum_probs=16.5
Q ss_pred hhhhhhhhhccccchhHHHH
Q 039074 450 NLANRYFRHVIHCKGCSSVI 469 (534)
Q Consensus 450 ~lldRy~~Ht~~C~sC~~Al 469 (534)
.+--+-+||++.|.||..|-
T Consensus 91 ~~egk~~QHVVKC~~CnEAT 110 (275)
T KOG4684|consen 91 SLEGKNQQHVVKCHSCNEAT 110 (275)
T ss_pred ccccccceeeEeecccCccc
Confidence 45568899999999998773
No 91
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=25.15 E-value=49 Score=25.93 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=14.4
Q ss_pred ccccchhHHHHHHHHHH
Q 039074 459 VIHCKGCSSVIKAFSTW 475 (534)
Q Consensus 459 t~~C~sC~~Al~~~~~~ 475 (534)
...|+.|++|.+.++..
T Consensus 8 ~~~C~~C~ka~~~L~~~ 24 (73)
T cd03027 8 RLGCEDCTAVRLFLREK 24 (73)
T ss_pred cCCChhHHHHHHHHHHC
Confidence 46799999999998864
No 92
>PRK00420 hypothetical protein; Validated
Probab=25.04 E-value=53 Score=28.97 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=26.2
Q ss_pred EEeCCCCCCCCccccCcccccEEEccCCCeEEec
Q 039074 119 CYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG 152 (534)
Q Consensus 119 a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~ 152 (534)
.+...||--|.||..- .+|...||-||-.+..
T Consensus 21 ml~~~CP~Cg~pLf~l--k~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 21 MLSKHCPVCGLPLFEL--KDGEVVCPVHGKVYIV 52 (112)
T ss_pred HccCCCCCCCCcceec--CCCceECCCCCCeeee
Confidence 3678999999999853 5788999999987764
No 93
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=22.14 E-value=25 Score=29.68 Aligned_cols=51 Identities=20% Similarity=0.237 Sum_probs=38.8
Q ss_pred ccccCcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccc
Q 039074 78 DWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLS 132 (534)
Q Consensus 78 ~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls 132 (534)
++...||.+.. ++|.-..++.+|+++...+.....-..|..+-|++|..++
T Consensus 4 dl~g~WYVLe~----~pGEHLvlealgqrls~iWtS~~~A~~F~~~~p~~GM~V~ 54 (103)
T PF11572_consen 4 DLSGTWYVLED----EPGEHLVLEALGQRLSGIWTSRELAQAFLARHPELGMRVS 54 (103)
T ss_dssp -TSSSEEEEES----STT-BEEEEETTEEEEEEBSSHHHHHHHHHTSTSS--EEE
T ss_pred CcccceEEecC----CCCceeeHHHHhhhHHhheecHHHHHHHHHhCcccCcEee
Confidence 45778998865 3666789999999999988876667889999999998775
No 94
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=21.83 E-value=4.8e+02 Score=22.57 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=39.5
Q ss_pred CCCCCCcEEEE--EcCE--EEEEEEecCCcEEEEeCCCCCCCCccccCcc-cccEEEccCCCeEEec
Q 039074 91 DVPDDAPLGLT--VFDQ--QIVLYKDGNGELRCYQDRCPHRLAKLSEGQL-IDGRLECLYHGWQFEG 152 (534)
Q Consensus 91 dl~~~~~~~~~--l~g~--~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i-~~~~l~CpyHGW~Fd~ 152 (534)
||.+++.+.+. ..|+ ++.+++..+|++++.-|.|-==+ ..|-. +++.|+|-.-|-+|..
T Consensus 1 ~v~Dgklh~y~y~~~G~~vrff~i~~~dg~~~va~daCeiC~---~~GY~q~g~~lvC~~C~~~~~~ 64 (102)
T PF10080_consen 1 DVKDGKLHRYAYTDDGKEVRFFAIKKPDGSYRVAFDACEICG---PKGYYQEGDQLVCKNCGVRFNL 64 (102)
T ss_pred CccCCcEEEEEEcCCCEEEEEEEEECCCCCEEEEEEeccccC---CCceEEECCEEEEecCCCEEeh
Confidence 34455544443 3444 56777888999999998875321 12333 5789999999999985
No 95
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=21.33 E-value=2.1e+02 Score=30.14 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 039074 467 SVIKAFSTWKNSL 479 (534)
Q Consensus 467 ~Al~~~~~~~~~l 479 (534)
+=+|+++.++++.
T Consensus 171 kklk~~r~~~kvs 183 (336)
T PF05055_consen 171 KKLKLVRTWRKVS 183 (336)
T ss_pred HHHHHHHHHHHHh
Confidence 3344555555554
No 96
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=20.83 E-value=48 Score=30.82 Aligned_cols=53 Identities=17% Similarity=0.407 Sum_probs=30.8
Q ss_pred Ccchhhhhhhh---h-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhH
Q 039074 447 HAPNLANRYFR---H-VIHCKGCSSVIKAFSTWKNSLSVVAAALTVLAILASGRQWK 499 (534)
Q Consensus 447 ~~~~lldRy~~---H-t~~C~sC~~Al~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~ 499 (534)
.+...|.||-. | --||++|.+.|.++-.+...=++-=.+.+.+--+.+...|.
T Consensus 6 ~k~rpLsrYLkDfKhsQthCshC~K~LDRisLV~~gqiinK~~Ia~md~liDd~~W~ 62 (168)
T TIGR03823 6 LKKRPLSRYLKDFKHSQTHCSHCHKLLDRISLVFRGQIINKESISRMDTLIDDNGWS 62 (168)
T ss_pred cccCcHHHHHHHhccccchhhhhcchhhheeeeecceeecHHHHHHHhhhccHHHHH
Confidence 45677888843 2 23899999999988554333332222233334455655554
No 97
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=20.71 E-value=4e+02 Score=25.60 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhc----cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 039074 483 AAALTVLAILAS----GRQWKAFCLASASLCLAGVYACSTAIA 521 (534)
Q Consensus 483 ~~~~~~~a~~~~----~~~~~~~~~~~a~~~~a~~~~~~~~~~ 521 (534)
+++..-.||+.+ .+.++..+.+.++++...+.||+-++.
T Consensus 54 ~I~~GI~AIvlSrnl~~~~L~W~Ll~~S~ln~LlSaAc~vGL~ 96 (188)
T PF12304_consen 54 SIICGIVAIVLSRNLRNRPLHWTLLVVSLLNALLSAACAVGLL 96 (188)
T ss_pred HHHHhHHHHhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333556654 566778888888888888888887663
No 98
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=20.05 E-value=5e+02 Score=26.59 Aligned_cols=28 Identities=18% Similarity=0.018 Sum_probs=21.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039074 495 GRQWKAFCLASASLCLAGVYACSTAIAM 522 (534)
Q Consensus 495 ~~~~~~~~~~~a~~~~a~~~~~~~~~~~ 522 (534)
+......+.+++++++|+.+|++.-+++
T Consensus 90 Gi~~~~l~a~~G~~glaiG~a~q~~l~N 117 (286)
T PRK10334 90 GVQTASVIAVLGAAGLAVGLALQGSLSN 117 (286)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777888888899999997775543
No 99
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=20.01 E-value=49 Score=30.77 Aligned_cols=54 Identities=17% Similarity=0.399 Sum_probs=31.3
Q ss_pred Ccchhhhhhhh---h-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 039074 447 HAPNLANRYFR---H-VIHCKGCSSVIKAFSTWKNSLSVVAAALTVLAILASGRQWKA 500 (534)
Q Consensus 447 ~~~~lldRy~~---H-t~~C~sC~~Al~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~ 500 (534)
.+...|.||-. | --||++|.+.|.++-.+...=++-=.+.+.+--+.+...|..
T Consensus 6 ~k~rpLsrYLkDfKhsQthCshC~K~LDRisLV~~gqiinK~~Ia~md~liDd~~W~~ 63 (169)
T PRK11582 6 LKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVFRGQIINKIAISRMDTLIDDNGWQK 63 (169)
T ss_pred cccCcHHHHHHHhcccccchhhhccchhheeeeecceeecHHHHHHHhhhccHHHHHH
Confidence 45677888843 2 238999999999885543333322222333444556555543
Done!