Query 039074
Match_columns 534
No_of_seqs 405 out of 2260
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 09:49:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039074.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039074hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gke_A DDMC; rieske cluster, n 100.0 8.9E-53 3E-57 438.3 23.3 313 78-401 4-335 (349)
2 1z01_A 2-OXO-1,2-dihydroquinol 100.0 2.3E-45 7.9E-50 394.2 26.9 332 57-403 18-407 (446)
3 2zyl_A Possible oxidoreductase 100.0 3.9E-45 1.3E-49 385.5 27.1 309 76-401 19-337 (386)
4 3n0q_A Putative aromatic-ring 100.0 1.8E-44 6E-49 382.2 21.8 329 56-400 15-396 (409)
5 2de6_A Terminal oxygenase comp 100.0 3.9E-44 1.3E-48 378.9 24.0 315 73-403 19-375 (392)
6 3vca_A Ring-hydroxylating diox 100.0 5.8E-44 2E-48 378.5 22.2 330 55-400 16-399 (412)
7 3gkq_A Terminal oxygenase comp 100.0 3.7E-42 1.3E-46 357.8 23.3 315 73-403 22-376 (389)
8 3gcf_A Terminal oxygenase comp 100.0 6.4E-42 2.2E-46 356.9 24.4 313 73-403 25-379 (394)
9 2gbw_A Biphenyl 2,3-dioxygenas 100.0 9.9E-38 3.4E-42 335.8 18.3 190 57-246 12-216 (454)
10 2b1x_A Naphthalene dioxygenase 100.0 3.3E-37 1.1E-41 333.0 20.1 191 56-246 19-225 (470)
11 2bmo_A Oxygenase-alpha NBDO; n 100.0 6.8E-38 2.3E-42 336.5 11.7 189 58-246 11-215 (447)
12 3gzx_A Biphenyl dioxygenase su 100.0 4.3E-37 1.5E-41 329.4 9.6 191 56-246 31-243 (457)
13 1uli_A Biphenyl dioxygenase la 100.0 4.4E-36 1.5E-40 323.3 12.9 190 56-245 29-233 (460)
14 2qpz_A Naphthalene 1,2-dioxyge 99.9 1.5E-26 5.2E-31 199.0 13.8 101 81-191 2-103 (103)
15 1vm9_A Toluene-4-monooxygenase 99.9 1.5E-26 5.3E-31 201.7 12.5 105 82-196 1-107 (111)
16 2de6_D Ferredoxin component of 99.9 1.7E-26 5.8E-31 202.9 12.3 104 81-194 3-108 (115)
17 1fqt_A Rieske-type ferredoxin 99.9 2.7E-26 9.1E-31 200.6 13.4 103 82-194 5-109 (112)
18 2i7f_A Ferredoxin component of 99.9 9E-27 3.1E-31 202.2 10.2 102 82-193 3-106 (108)
19 3dqy_A Toluene 1,2-dioxygenase 99.9 2E-26 7E-31 199.2 10.3 102 82-193 1-103 (106)
20 2jza_A Nitrite reductase [NAD( 99.9 5.4E-26 1.8E-30 203.9 12.7 110 82-201 3-119 (130)
21 2jo6_A Nitrite reductase [NAD( 99.9 8.3E-26 2.8E-30 197.7 13.1 100 82-191 6-112 (113)
22 3c0d_A Putative nitrite reduct 99.9 4.7E-26 1.6E-30 201.2 11.5 103 81-193 4-112 (119)
23 3gce_A Ferredoxin component of 99.9 1.2E-25 4E-30 199.3 12.7 102 82-193 10-114 (121)
24 3d89_A Rieske domain-containin 99.9 2.5E-26 8.4E-31 212.7 8.6 115 79-194 13-137 (157)
25 4aiv_A Probable nitrite reduct 99.9 6E-26 2E-30 200.5 10.5 101 81-191 8-116 (119)
26 1rfs_A Rieske protein; iron-su 99.8 2.7E-21 9.4E-26 175.1 9.6 101 81-191 20-124 (139)
27 1rie_A Rieske iron-sulfur prot 99.8 1.6E-20 5.4E-25 168.1 11.6 97 82-188 5-128 (129)
28 1g8k_B Arsenite oxidase; molyb 99.8 7.8E-20 2.7E-24 164.4 11.8 98 82-189 7-119 (133)
29 3azc_A Cytochrome B6-F complex 99.7 9.7E-21 3.3E-25 169.8 0.0 102 82-193 15-121 (133)
30 4aay_B AROB; oxidoreductase, r 99.8 3.4E-19 1.2E-23 167.1 10.1 98 82-189 50-161 (175)
31 1nyk_A Rieske iron-sulfur prot 99.7 2.7E-17 9.2E-22 152.9 10.2 72 113-194 77-150 (165)
32 1pp9_E Ubiquinol-cytochrome C 99.7 3.3E-17 1.1E-21 156.4 10.4 94 86-188 75-195 (196)
33 2qjy_C Ubiquinol-cytochrome C 99.7 5E-17 1.7E-21 154.2 11.4 96 83-188 49-186 (187)
34 3cx5_E Cytochrome B-C1 complex 99.7 6.7E-17 2.3E-21 153.0 11.5 97 81-188 61-184 (185)
35 2nwf_A Ubiquinol-cytochrome C 99.7 6.4E-17 2.2E-21 146.6 10.4 93 87-188 6-140 (141)
36 1vf5_D Rieske iron-sulfur prot 99.6 1.8E-17 6.3E-22 156.3 1.3 93 89-191 70-165 (179)
37 1jm1_A Rieske iron-sulfur prot 99.5 1.5E-15 5.2E-20 145.7 4.3 85 98-191 56-167 (204)
38 3hug_B Probable conserved memb 51.8 5.4 0.00018 33.7 1.5 33 450-482 42-74 (108)
39 3fz4_A Putative arsenate reduc 42.9 9.6 0.00033 32.4 1.8 18 458-475 9-26 (120)
40 3f0i_A Arsenate reductase; str 41.0 11 0.00038 32.0 1.8 17 458-474 10-26 (119)
41 3gkx_A Putative ARSC family re 39.1 12 0.00041 31.8 1.8 17 458-474 10-26 (120)
42 3rdw_A Putative arsenate reduc 36.1 14 0.00047 31.5 1.7 17 458-474 11-27 (121)
43 3l78_A Regulatory protein SPX; 32.8 17 0.0006 30.7 1.8 17 458-474 6-22 (120)
44 2q1z_B Anti-sigma factor CHRR, 32.7 21 0.00071 33.0 2.4 30 451-480 24-53 (195)
45 1s3c_A Arsenate reductase; ARS 32.5 18 0.00061 31.7 1.8 17 458-474 8-24 (141)
46 1rw1_A Conserved hypothetical 32.5 18 0.00061 30.2 1.8 17 458-474 6-22 (114)
47 2kok_A Arsenate reductase; bru 30.5 20 0.00069 30.1 1.8 18 458-475 11-28 (120)
48 3j27_B Matrix protein, small e 25.6 1.3E+02 0.0046 23.3 5.6 52 462-514 19-74 (75)
49 1p58_D Envelope protein M; fla 23.3 1.3E+02 0.0044 23.5 5.0 50 463-513 20-73 (75)
50 1z3e_A Regulatory protein SPX; 20.8 39 0.0013 28.8 1.8 18 458-475 7-24 (132)
51 3udc_A Small-conductance mecha 20.5 2.4E+02 0.0083 27.1 7.8 28 495-522 89-116 (285)
No 1
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=100.00 E-value=8.9e-53 Score=438.34 Aligned_cols=313 Identities=21% Similarity=0.349 Sum_probs=240.2
Q ss_pred ccccCcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEecCCcee
Q 039074 78 DWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCV 157 (534)
Q Consensus 78 ~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~~G~c~ 157 (534)
.+++.||+||.++|| +++++.++++|++|+|||+.+|+++|++|+|||||++|+.|+++++.|+||||||+||.||+|+
T Consensus 4 ~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~~G~~~ 82 (349)
T 3gke_A 4 FVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGGQCV 82 (349)
T ss_dssp CCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEEETTEEECTTTCCEECTTCCEE
T ss_pred ccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCccceEEEECCCCCEEcCCCCcc
Confidence 467899999999999 7889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCCCCCCCCccccccCCCceeeeeEEEeecChhhhcccCCCCcc
Q 039074 158 KIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLPWFENFARPGFQDVSTIHELPYDHSILLENLMDPAH 237 (534)
Q Consensus 158 ~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~EN~lD~~H 237 (534)
.+|+. ...++...++++|||++++|+||||+++++.++...+|.++++++++|.......+++|||++++||++|+||
T Consensus 83 ~~P~~--~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H 160 (349)
T 3gke_A 83 HNPHG--NGARPASLNVRSFPVVERDALIWIWPGDPALADPGAIPDFGCRVDPAYRTVGGYGHVDCNYKLLVDNLMDLGH 160 (349)
T ss_dssp ECCST--TCCCCGGGCCCBCCEEEETTEEEECCSCGGGCCGGGSCCCGGGGCTTSEEEEEEEEESSCHHHHHHHHHCGGG
T ss_pred ccCcc--ccccccccccceeeEEEECCEEEEeeCCCCCCcccccCCccccCCCCCEEEeEEEEEecCHHhHHHhcccccc
Confidence 99962 2345667889999999999999999987654444557888877778887666667899999999999999999
Q ss_pred CccccCCcccccccccCCCceEEEEeeccCccccc-cC-------------C--CCCCCCCeEEEEecCeeeecceeeec
Q 039074 238 IPISHDRTDWTAKREDAQPLGFEVTERTDRGFAGR-WG-------------K--EKDEPLPNFLRFEAPCVLQNNRELVD 301 (534)
Q Consensus 238 ~~~~H~~~~~~~~r~~~~p~~~~v~~~~~~gf~~~-~~-------------~--~~~~~~~~~~~F~~P~~~~~~~~~~~ 301 (534)
++|+|+++++. ++.. ....+++. +..++... +. . +...+.+..++|.+||++..++.+.+
T Consensus 161 ~~~~H~~~~~~--~~~~-~~~~~v~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~~~~~~~~~ 236 (349)
T 3gke_A 161 AQYVHRANAQT--DAFD-RLEREVIV-GDGEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAMLNFIAVAP 236 (349)
T ss_dssp HHHHTHHHHCC--TTGG-GCEEEEEE-CSSEEEEEEEEEEECCCHHHHHHTTTCCSCEEEEEEEEEETTTEEEEEEEEEE
T ss_pred chhccchhhcC--cccc-CCCCEEEE-cCCEEEEEEEecCCCCChHHHhhcccCCCCceeEEEEEEECCEEEEEEEeccc
Confidence 99999988643 2222 12334442 22233111 10 0 00112235789999999877665432
Q ss_pred CC--CCceeEEEEEEEeeeCCCCeEEEEEEEecCCCCcccccchhhhhhhhhhhhH-HhHHHHHHHHHHhhhhcCCCccc
Q 039074 302 SK--TGEKHYFTGLFLCRPTGQGKSMLIVRFGATKRSPLAKLFPKWYFHQNASKVF-EQDMGFLSSQNEVLMKETVPTKE 378 (534)
Q Consensus 302 ~~--~G~~~~~~~v~~~~Pv~pg~trl~~~~~~~~~~~~~~~~p~w~~h~~~~~Vl-~eD~~iL~~Qe~~l~~~~~~~k~ 378 (534)
.+ ......+..+++|+|+++++||+++.+.+|+......+.+.|. .++++|| +||+.|||.||+++...+. ...
T Consensus 237 ~g~p~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~~d~~~~~~~~--~~~~~if~~ED~~ile~Qq~~l~~~~~-~~~ 313 (349)
T 3gke_A 237 EGTPKEQSIHSRGTHILTPETEASCHYFFGSSRNFGIDDPEMDGVLR--SWQAQALVKEDKVVVEAIERRRAYVEA-NGI 313 (349)
T ss_dssp TTSCGGGSEEEEEEEEEEEEETTEEEEEEEEEESSSTTCHHHHHHHH--HHHHHHTTTHHHHHHHHHHHTHHHHHH-TTC
T ss_pred CCCCCCCceEEEEEEEEecCCCCeEEEEEEEEecCccCchhhhHHHH--HHHhhhhhhhhHHHHHHHHHHhhcCCc-ccc
Confidence 11 1112345567889999999999999999998754333334443 4577898 9999999999999887421 122
Q ss_pred cccccCcCcHHHHHHHHHHHHhC
Q 039074 379 LYLNLRSSDTWVAEYRKWMDKVG 401 (534)
Q Consensus 379 ~y~~~~~aD~~ViafRrWl~~~~ 401 (534)
.++ +..+|+++++|||||+++.
T Consensus 314 ~~~-~~~~D~~~v~~Rr~l~~l~ 335 (349)
T 3gke_A 314 RPA-MLSCDEAAVRVSREIEKLE 335 (349)
T ss_dssp CCC-CCGGGHHHHHHHHHHHHHH
T ss_pred ccc-cccccHHHHHHHHHHHHHH
Confidence 233 3578999999999999974
No 2
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=100.00 E-value=2.3e-45 Score=394.19 Aligned_cols=332 Identities=22% Similarity=0.284 Sum_probs=228.4
Q ss_pred ccccCCCCcccccccc--cccccccccCcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccC
Q 039074 57 KVLVGPASAEERRGER--QVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEG 134 (534)
Q Consensus 57 ~~~~p~~~y~~~~~~~--~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G 134 (534)
...+|.+ +|+++++ .|.+++|.+.||+|++++||+++.++.++++|++||||| .+|+++||+|+|||||++|+.|
T Consensus 18 ~~~~p~~--~~~~~~~~~~e~~~if~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r-~~G~v~a~~n~CpHrga~L~~g 94 (446)
T 1z01_A 18 DARANNA--KTQSQYQPYKDAAWGFINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLHRGVRLSEK 94 (446)
T ss_dssp TTSSSCH--HHHGGGHHHHHCTTCBCSEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGS
T ss_pred cccCCcc--cCHHHhhhhhhhhhhhhhceEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCEEEEEeCcCCCCcCCCCCC
Confidence 3445666 8999999 999999999999999999999888899999999999999 6999999999999999999999
Q ss_pred cc--cccEEEccCCCeEEec-CCceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCC------CCCCCCCC-cc
Q 039074 135 QL--IDGRLECLYHGWQFEG-EGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKT------PPNPDKLP-WF 204 (534)
Q Consensus 135 ~i--~~~~l~CpyHGW~Fd~-~G~c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~------~~~~~~lP-~~ 204 (534)
++ +++.|+||||||+||+ +|+|+.+|+.+.. ..++..+|++|||++++|+||||+++++ ++..+.+| .+
T Consensus 95 ~~~~~~~~i~CpyHgw~fd~~~G~~~~~p~~p~~-~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~l~~~l~~~~ 173 (446)
T 1z01_A 95 PTCFTKSTISCWYHGFTFDLETGKLVTIVANPED-KLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPPLAHDLPFRF 173 (446)
T ss_dssp CCCSSTTEEECTTTCEEEETTTCBEEEETTCTTC-TTTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCCGGGGSCCCT
T ss_pred ccCCCCCEEEeCCCCeEEeCCCCCccccCCCccc-cCcccCCCcEEEEEEECCEEEEEeCCccccccCCCChhHhccchh
Confidence 84 5789999999999998 9999999976532 2345678999999999999999998643 12222233 11
Q ss_pred ---------------ccccCCCceeeeeEEEeecChhhhcccCCCCccCccccCCcccccccccCCCceEE--------E
Q 039074 205 ---------------ENFARPGFQDVSTIHELPYDHSILLENLMDPAHIPISHDRTDWTAKREDAQPLGFE--------V 261 (534)
Q Consensus 205 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~EN~lD~~H~~~~H~~~~~~~~r~~~~p~~~~--------v 261 (534)
+.+.++++.......+++|||++++||++|+||+ |+|+++++........++.+. .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (446)
T 1z01_A 174 PERSEQFPHPLWPSSPSVLDDNAVVHGMHRTGFGNWRIACENGFDNAHI-LVHKDNTIVHAMDWVLPLGLLPTSDDCIAV 252 (446)
T ss_dssp TTTTTTSCCTTSCCCCCTTSTTEEEEEEEEEEESCHHHHHTTTTCTTGG-GGGTTCHHHHHTTCCCCSEEEECSTTSEEE
T ss_pred hhhhhccccccccccccccCCCeEEEeEEEEEcCCHHHHHHhccchhhh-hhhhhhhhcccccccccccccccCCCceeE
Confidence 1223345554444568999999999999999999 999987532111111111111 1
Q ss_pred Ee--eccCcccccc-C-----------CC----CCCCCCeEEEEecCeeeecceeeecCCCCceeEEEEEEEeeeCCCCe
Q 039074 262 TE--RTDRGFAGRW-G-----------KE----KDEPLPNFLRFEAPCVLQNNRELVDSKTGEKHYFTGLFLCRPTGQGK 323 (534)
Q Consensus 262 ~~--~~~~gf~~~~-~-----------~~----~~~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~ 323 (534)
.. .+..|+.... . .+ ..........|..|+++++.. + +.. . +..+..++|+++++
T Consensus 253 ~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~P~~~~~~~-~---p~~--~-~~~~~~~~Pi~~~~ 325 (446)
T 1z01_A 253 VEDDDGPKGMMQWLFTDKWAPVLENQELGLKVEGLKGRHYRTSVVLPGVLMVEN-W---PEE--H-VVQYEWYVPITDDT 325 (446)
T ss_dssp ECCSSSCCEEEECTTSTTEEEECEETTTTEECCCCCCCCCEEEEETTTEEEEET-C---SST--T-CEEEEEEEESSSSE
T ss_pred EEecCCCCEEEEEecCccccchhhhhhhccccccCCceEEEeeeecCceEEEec-c---CCC--C-eEEEEEEEECCCCc
Confidence 10 1112321111 0 00 001133456788999886432 1 111 1 23455678999999
Q ss_pred EEEEEEEecCCCCc--ccccc---hhhhhhhhhhhhHHhHHHHHHHHHHhhhhcCCCccccccccCcCcHHHHHHHHHHH
Q 039074 324 SMLIVRFGATKRSP--LAKLF---PKWYFHQNASKVFEQDMGFLSSQNEVLMKETVPTKELYLNLRSSDTWVAEYRKWMD 398 (534)
Q Consensus 324 trl~~~~~~~~~~~--~~~~~---p~w~~h~~~~~Vl~eD~~iL~~Qe~~l~~~~~~~k~~y~~~~~aD~~ViafRrWl~ 398 (534)
|++++.+..+.... ...+. ..++.......|+.||+.+++.||+++.+...+.++ + +.++|.++++||||++
T Consensus 326 t~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ED~~i~e~~q~~~~~~~~~~~~-~--l~~~D~~i~~~Rr~l~ 402 (446)
T 1z01_A 326 HEYWEILVRVCPTDEDRKKFQYRYDHMYKPLCLHGFNDSDLYAREAMQNFYYDGTGWDDE-Q--LVATDISPITWRKLAS 402 (446)
T ss_dssp EEEEEEEEEECCSHHHHHHHHHHHHTTHHHHTTTTHHHHHHHHHHHHHHHHHTSHHHHHC-C--CCGGGHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHhccccccccc-c--CchhhHHHHHHHHHHH
Confidence 99877766554321 00000 112222234557899999999999987542111112 2 3458999999999999
Q ss_pred HhCCC
Q 039074 399 KVGHG 403 (534)
Q Consensus 399 ~~~~g 403 (534)
++..+
T Consensus 403 ~~~~~ 407 (446)
T 1z01_A 403 RWNRG 407 (446)
T ss_dssp HHCSC
T ss_pred HHHhh
Confidence 98755
No 3
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.9e-45 Score=385.55 Aligned_cols=309 Identities=20% Similarity=0.300 Sum_probs=219.2
Q ss_pred ccccccCcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEecCCc
Q 039074 76 DYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGK 155 (534)
Q Consensus 76 ~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~~G~ 155 (534)
..+|.+.||+|++++||++++++.++++|++|+|||+.+|+++||+|+|||||++|+.|+++++.|+||||||+||++|+
T Consensus 19 ~~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~G~v~a~~n~CpHrga~L~~g~~~~~~i~CpyHgw~f~~~G~ 98 (386)
T 2zyl_A 19 PTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTVKGDEVACPFHDWRWGGDGR 98 (386)
T ss_dssp CSSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBGGGSEEETTEEECTTTCCEEETTSB
T ss_pred chhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCCCCcccCCEEEeCCCCCEECCCCC
Confidence 45678899999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCC--CCCCCCccccccCCCceee-eeEEEee-cChhhhccc
Q 039074 156 CVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPP--NPDKLPWFENFARPGFQDV-STIHELP-YDHSILLEN 231 (534)
Q Consensus 156 c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~~~--~~~~lP~~~~~~~~~~~~~-~~~~~~~-~~~~~~~EN 231 (534)
|+.+|+.. .+++..++++|||++++|+||||++++..+ +...+|.++.++.++|... ....+++ +|||.++||
T Consensus 99 ~~~~P~~~---~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN 175 (386)
T 2zyl_A 99 CKLVPYAR---RTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDPAVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDN 175 (386)
T ss_dssp EEECTTCS---SCCTTCBCCEECEEEETTEEEEEECTTCCCCCGGGCCCCCGGGGCTTBCCCEEEEEEEESSCGGGGGGG
T ss_pred ccccCccc---ccCcccCcceEeEEEECCEEEEEECCccCCCcccccCcccccccCCCceEEEEEEEEEcCcCHHhHhhh
Confidence 99999753 345667899999999999999999865432 2235688888877777653 3456788 999999999
Q ss_pred CCCCccCccccCCcccccc--cccCCCceEEEEeeccCccccccCCCCCCCCCeEEEEecCeeeecceeeecCCCCceeE
Q 039074 232 LMDPAHIPISHDRTDWTAK--REDAQPLGFEVTERTDRGFAGRWGKEKDEPLPNFLRFEAPCVLQNNRELVDSKTGEKHY 309 (534)
Q Consensus 232 ~lD~~H~~~~H~~~~~~~~--r~~~~p~~~~v~~~~~~gf~~~~~~~~~~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~ 309 (534)
++|+||++|+|+++..... .++.....+. .......+.................|..|+++.+.+.... .|....
T Consensus 176 ~~D~~H~~~~H~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~--~g~~~~ 252 (386)
T 2zyl_A 176 VTDMAHFFYIHFGLPTYFKNVFEGHIASQYL-HNVGRPDVDDLGTSYGEAHLDSEASYFGPSFMINWLHNRY--GNYKSE 252 (386)
T ss_dssp GGCSTHHHHTTCEEEEEEEEEEETTEEEEEE-EEEECTTSSSCCSSSCCEEEEEEEEEESSSEEEEEEEEEE--TTEEEE
T ss_pred cccccchhhhCcCccccccccccCceeEEEe-cCCCCCchhhcccccCcceeeEEEEEECCeEEEEEeeecc--CCccee
Confidence 9999999999997632110 0000000110 0000011100000000011234568899998876543322 222222
Q ss_pred EEEEEEeeeCCCCeEEEEEEEecCCCCcccc----cchhhhhhhhhhhhHHhHHHHHHHHHHhhhhcCCCccccccccCc
Q 039074 310 FTGLFLCRPTGQGKSMLIVRFGATKRSPLAK----LFPKWYFHQNASKVFEQDMGFLSSQNEVLMKETVPTKELYLNLRS 385 (534)
Q Consensus 310 ~~~v~~~~Pv~pg~trl~~~~~~~~~~~~~~----~~p~w~~h~~~~~Vl~eD~~iL~~Qe~~l~~~~~~~k~~y~~~~~ 385 (534)
...++.++|+++++|++++.+..++...+.. .+... +.....++++||+.|++.|++... . + +..
T Consensus 253 ~~~~~~~~Pv~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vf~ED~~I~e~q~~~~~-------p-~--~~~ 321 (386)
T 2zyl_A 253 SILINCHYPVTQNSFVLQWGVIVEKPKGMSEEMTDKLSRV-FTEGVSKGFLQDVEIWKHKTRIDN-------P-L--LVE 321 (386)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEBCCCCCC--CTHHHHHH-HHHHHHHHHHHHHHHHTTCCCCSS-------C-C--CCG
T ss_pred EEEEEEEEEccCCEEEEEEEEEEecCCCCChhhHHHHHHH-HHHHHHHhhHHHHHHHHhcccccC-------C-c--cCc
Confidence 3345566899999999988876655322211 11111 234567899999999999875321 1 2 234
Q ss_pred CcHHHHHHHHHHHHhC
Q 039074 386 SDTWVAEYRKWMDKVG 401 (534)
Q Consensus 386 aD~~ViafRrWl~~~~ 401 (534)
.|..++.||||++++-
T Consensus 322 ~D~~~~~fRrw~~~~~ 337 (386)
T 2zyl_A 322 EDGAVYQLRRWYEQFY 337 (386)
T ss_dssp GGCSHHHHHHHHHGGG
T ss_pred ccHHHHHHHHHHHHhC
Confidence 7999999999999964
No 4
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=100.00 E-value=1.8e-44 Score=382.15 Aligned_cols=329 Identities=14% Similarity=0.220 Sum_probs=231.9
Q ss_pred CccccCCCCcccccccccccccccccCcEEeeecCCCCC-CCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCcccc-
Q 039074 56 HKVLVGPASAEERRGERQVADYDWTEEWYPLYLTKDVPD-DAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSE- 133 (534)
Q Consensus 56 ~~~~~p~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~- 133 (534)
....+|.++|+|+++++.|.+.+|.+.|++|++++||++ +.++.++++|++|+|+|+.+|+++||.|+|||||++|+.
T Consensus 15 ~~~~lp~~~Y~d~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~n~C~Hrga~L~~~ 94 (409)
T 3n0q_A 15 AGHALDQAFYTDAEVFQTDLQEIFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRAFHNACRHRGSVICKA 94 (409)
T ss_dssp TTBCCCHHHHHCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCS
T ss_pred CcccCCHHHcCCHHHHHHHHHHHHhcCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEeecCcCCcCcCCccCc
Confidence 356789999999999999999999999999999999986 557899999999999999999999999999999999995
Q ss_pred CcccccEEEccCCCeEEecCCceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCCCCCCC----CccccccC
Q 039074 134 GQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKL----PWFENFAR 209 (534)
Q Consensus 134 G~i~~~~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~~~~~~~l----P~~~~~~~ 209 (534)
|+++++.|+||||||+||.||+|+.+|..+.. -.++..+|++|||++++|+|||++++++++..+.+ +.++.++.
T Consensus 95 g~~~~~~i~CpyHgw~fd~dG~~~~~P~~~~~-~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~~l~~~l~~~~~~l~~~~~ 173 (409)
T 3n0q_A 95 KKGNNPKLVCPYHQWTYELDGRLLWARDMGPD-FEPSRHGLKTVHCRELAGLIYICLADEAPDFERFAEVARPYLEVHDL 173 (409)
T ss_dssp SEEECSSEECTTTCCEECTTSCEEECTTCCTT-CCGGGCSCCEEEEEEETTEEEEECSSSCCCCHHHHHHHHHHHHTTCG
T ss_pred CccCCCEEEECCCCCEEeCCCCcccCCcCCcc-cCcccCCCceEEEEEECCEEEEEeCCCCCChHHhhhhhhhhhccccC
Confidence 88888999999999999999999999976422 12356789999999999999999987764332222 12222222
Q ss_pred CCceee-eeEEEeecChhhhcccCCCCccCccccCCccccccc-c-----------------------cCCCc-------
Q 039074 210 PGFQDV-STIHELPYDHSILLENLMDPAHIPISHDRTDWTAKR-E-----------------------DAQPL------- 257 (534)
Q Consensus 210 ~~~~~~-~~~~~~~~~~~~~~EN~lD~~H~~~~H~~~~~~~~r-~-----------------------~~~p~------- 257 (534)
+++... ....+++||||+++||++|+||++++|+++...... . ...+.
T Consensus 174 ~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 253 (409)
T 3n0q_A 174 SNAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFDRCEQAGMPSGFHLSGD 253 (409)
T ss_dssp GGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCTTGGGTSCCCHHHHSCCCSCCCHHHHHHHHHHHHTTCCCCCEECTT
T ss_pred CCeEEeeEEEEEEecchHhhhhhccccccccccCcchhhccccccccccccccccccchhhhhhhhhccCCcceeecccc
Confidence 233322 245678999999999999999999999987532100 0 00011
Q ss_pred -eEEEEeec-cCc---cc--c-----ccCCC-CCCCCCeEEEEecCeeeecceeeecCCCCceeEEEEEEEeeeCCCCeE
Q 039074 258 -GFEVTERT-DRG---FA--G-----RWGKE-KDEPLPNFLRFEAPCVLQNNRELVDSKTGEKHYFTGLFLCRPTGQGKS 324 (534)
Q Consensus 258 -~~~v~~~~-~~g---f~--~-----~~~~~-~~~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~t 324 (534)
.+.+.... ..+ +. + .+... ...+......+..||++++.. + + .+.++.++|+++++|
T Consensus 254 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~-----p----d-~~~~~~~~P~~p~~t 323 (409)
T 3n0q_A 254 GQFRVARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHFL-----S----D-HSIVFRVTPISPTET 323 (409)
T ss_dssp SSEEEEEECCSTTCCSSSTTSSCSCSSCSSCCSSSCCCEEEEEETTTEEEEEC-----S----S-CEEEEEEEEEETTEE
T ss_pred cceeeeeecccccccccccCCccccccccCCCcccCCceEEEEECCeEEEEEC-----C----C-EEEEEEEEECCCCeE
Confidence 11111000 000 00 0 00000 112334567888999987543 1 1 245667789999999
Q ss_pred EEEEEEecCCCCccc-cc-chhhhhhhhhhhhHHhHHHHHHHHHHhhhhcCCCccccccccCcCcHHHHHHHHHHHHh
Q 039074 325 MLIVRFGATKRSPLA-KL-FPKWYFHQNASKVFEQDMGFLSSQNEVLMKETVPTKELYLNLRSSDTWVAEYRKWMDKV 400 (534)
Q Consensus 325 rl~~~~~~~~~~~~~-~~-~p~w~~h~~~~~Vl~eD~~iL~~Qe~~l~~~~~~~k~~y~~~~~aD~~ViafRrWl~~~ 400 (534)
++...+..+...... +. +.. .......|.+||..|++..|+++...... ...|.+ .....+..|.+|+.+.
T Consensus 324 ~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~ED~~l~e~~Q~G~~s~~y~-~G~~s~--~~E~~v~~F~~w~~~~ 396 (409)
T 3n0q_A 324 EVTTKWLVHKDAVEGVDYDLQR--LTEVWIATNDEDREVVEFNQMGINSPAYE-PGPYSP--TQESGVLQFVEWYLST 396 (409)
T ss_dssp EEEEEEEEETTCCBTTTBCHHH--HHHHHHHHHHHHHHHHHHHHHHHTSTTCC-CCBCCT--TTSHHHHHHHHHHHHH
T ss_pred EEEEEEEEcCcccccchhhHHH--HHHHHHHHHHHHHHHHHHHhhhhcCCCCC-CCCCCC--CccHhHHHHHHHHHHH
Confidence 998777765432110 11 111 11234578899999999999999764321 122322 2489999999999975
No 5
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=100.00 E-value=3.9e-44 Score=378.89 Aligned_cols=315 Identities=20% Similarity=0.351 Sum_probs=215.7
Q ss_pred cccccccccCcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcc--cccEEEccCCCeEE
Q 039074 73 QVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQL--IDGRLECLYHGWQF 150 (534)
Q Consensus 73 ~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i--~~~~l~CpyHGW~F 150 (534)
.|.+.+|++.||+|++++||++++++.++++|++|||||+ +|+++||.|+|||||++|+.|++ +++.|+||||||+|
T Consensus 19 ~e~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~-~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f 97 (392)
T 2de6_A 19 VDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRI-DGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTY 97 (392)
T ss_dssp HHCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE-TTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEE
T ss_pred chhhhhhccccEEEEEHHHCCCCCeEEEEECCEEEEEEEe-CCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEE
Confidence 4668899999999999999998888999999999999995 99999999999999999999986 46899999999999
Q ss_pred ec-CCceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCC-CCCCCCccccccCCCceeeeeEEEeecChhhh
Q 039074 151 EG-EGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPP-NPDKLPWFENFARPGFQDVSTIHELPYDHSIL 228 (534)
Q Consensus 151 d~-~G~c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~~~-~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (534)
|+ +|+|+.+|+.+.. ..++..+|++|||++++|+||||+++++++ ....+| +++.++++.......+++|||+++
T Consensus 98 ~~~~G~~~~~p~~p~~-~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~l~~~l~--~~~~~~~~~~~~~~~~~~~nwk~~ 174 (392)
T 2de6_A 98 RWEDGVLCDILTNPTS-AQIGRQKLKTYPVQEAKGCVFIYLGDGDPPPLARDTP--PNFLDDDMEILGKNQIIKSNWRLA 174 (392)
T ss_dssp ETTTCBEEEETTCTTC-TTTTSCBCCBCCEEEETTEEEEEESSSSCCCGGGGSC--TTTTCTTEEEEEEEEEESSCHHHH
T ss_pred cCCCCccccccCCccc-cccccCCCceEeEEEECCEEEEEeCCCCCCChhHhcc--ccccCCCeEEEEEEEEEecChHhh
Confidence 98 9999999976532 234567899999999999999999754322 111221 345556666554566899999999
Q ss_pred cccCCCCccCccccCCcccccccccCC-----------CceEEEEeec--cCccccccC-----------CC------CC
Q 039074 229 LENLMDPAHIPISHDRTDWTAKREDAQ-----------PLGFEVTERT--DRGFAGRWG-----------KE------KD 278 (534)
Q Consensus 229 ~EN~lD~~H~~~~H~~~~~~~~r~~~~-----------p~~~~v~~~~--~~gf~~~~~-----------~~------~~ 278 (534)
+||++|+||+ |+|+++++........ ...+++.... ..|+..... .+ ..
T Consensus 175 ~EN~~D~~H~-~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~ 253 (392)
T 2de6_A 175 VENGFDPSHI-YIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVVREGAY 253 (392)
T ss_dssp HHHHHCGGGG-GGGTTCHHHHHTTBEECSEEECCSCGGGGEEEECCCTTCCCEEEECGGGTCEEECEEEETTEEEEECEE
T ss_pred hHhcchhhhh-hhhcchhccccccccccccccccccccceEEeccCCccCCcceeeecCCccccccccccccceeecccc
Confidence 9999999999 9999875321111000 1122232110 112211000 00 00
Q ss_pred --CCCCeEEEEecCeeeecceeeecCCCCceeEEEEEEEeeeCCCCeEEEEEEEecCCCCccc--cc----chhhhhhhh
Q 039074 279 --EPLPNFLRFEAPCVLQNNRELVDSKTGEKHYFTGLFLCRPTGQGKSMLIVRFGATKRSPLA--KL----FPKWYFHQN 350 (534)
Q Consensus 279 --~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trl~~~~~~~~~~~~~--~~----~p~w~~h~~ 350 (534)
........+.+|+++.... + ++.. +..+..++|+++++|++++.+.++...... .+ ...|. ...
T Consensus 254 g~~~~~~~~~~~~P~~~~~~~-~---p~~~---~~~~~~~~Pi~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 325 (392)
T 2de6_A 254 GEKIVANDISIWLPGVLKVNP-F---PNPD---MMQFEWYVPIDENTHYYFQTLGKPCANDEERKKYEQEFESKWK-PMA 325 (392)
T ss_dssp CSBCCCCEEEEETTTEEEEES-C---SSTT---CEEEEEEEEEETTEEEEEEEEEEECSSHHHHHHHHHHHHHTHH-HHT
T ss_pred CCcccceeEEEecccceeccc-c---CCCC---EEEEEEEeecCCCcEEEEEEEecCCCCHHHHHHHHHHHHHHHH-Hhh
Confidence 0123455677898864321 1 1211 223445689999999988776655432100 00 00111 112
Q ss_pred hhhhHHhHHHHHHHHHHhhhhcCCCccccccccCcCcHHHHHHHHHHHHhCCC
Q 039074 351 ASKVFEQDMGFLSSQNEVLMKETVPTKELYLNLRSSDTWVAEYRKWMDKVGHG 403 (534)
Q Consensus 351 ~~~Vl~eD~~iL~~Qe~~l~~~~~~~k~~y~~~~~aD~~ViafRrWl~~~~~g 403 (534)
...+++||+.++|+||+++.+...+.++.. .++|+++++||||++++..+
T Consensus 326 ~~~~~~qD~~i~e~qq~~~~~~~~~~~e~~---~~~D~~~~~~Rr~l~~~~~~ 375 (392)
T 2de6_A 326 LEGFNNDDIWAREAMVDFYADDKGWVNEIL---FESDEAIVAWRKLASEHNQG 375 (392)
T ss_dssp TTTTTHHHHHHHHHTHHHHHTSTHHHHCCC---CGGGHHHHHHHHHHHHHCSC
T ss_pred ccCCChhhHHHHHhhhhhhhccccCcccee---cchhHHHHHHHHHHHHHhhh
Confidence 345789999999999998765321122332 35799999999999999865
No 6
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=100.00 E-value=5.8e-44 Score=378.49 Aligned_cols=330 Identities=13% Similarity=0.192 Sum_probs=231.8
Q ss_pred CCccccCCCCcccccccccccccccccCcEEeeecCCCCC-CCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccc-
Q 039074 55 DHKVLVGPASAEERRGERQVADYDWTEEWYPLYLTKDVPD-DAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLS- 132 (534)
Q Consensus 55 ~~~~~~p~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls- 132 (534)
.....+|.++|+|+++++.|.+.+|.+.|++||+++||++ +.++.++++|++|+|+|+.+|+++||.|+|||||++|+
T Consensus 16 ~~~~~lp~~~Y~d~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~n~CpHrga~L~~ 95 (412)
T 3vca_A 16 LSGFSLEQPFYTSPEVYALDLQHIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICK 95 (412)
T ss_dssp CTTBCCCHHHHHCHHHHHHHHHHTTTTSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCC
T ss_pred CCcCcCCHHHcCCHHHHHHHHHHHHhccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEEecccCCCCCCEeec
Confidence 3456789999999999999999999999999999999985 55789999999999999999999999999999999998
Q ss_pred cCcccccEEEccCCCeEEecCCceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCCCCCCC----Ccccccc
Q 039074 133 EGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKL----PWFENFA 208 (534)
Q Consensus 133 ~G~i~~~~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~~~~~~~l----P~~~~~~ 208 (534)
+|+++++.|+||||||+||+||+|+.+|..+.. -.++..+|++|||++++|+|||++++++++..+.+ +.++.++
T Consensus 96 ~g~~~~~~i~CPyHgw~fdldG~~~~~P~~~~~-~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~l~~~l~~~~~~l~~~~ 174 (412)
T 3vca_A 96 ARQGQVAKLVCPYHQWTYELDGKLIWANDMGPD-FDASKYGLKPVNLRNLDGLIYICLSDTPPDFQTFAQLARPYLEVHD 174 (412)
T ss_dssp SSEEECSSEECTTTCCEECTTSCEEECTTCCTT-CCGGGCSCCEEEEEEETTEEEEECSSSCCCCHHHHHHHHHHHHTTC
T ss_pred ccccCCCEEEcCCCCCEEcCCCccccCCccccc-cCcccCCCcEEEEEEECCEEEEEecCCCCCHHHHhhhhHHhhcccc
Confidence 788888999999999999999999999976422 12346789999999999999999987764332222 1222222
Q ss_pred CCCcee-eeeEEEeecChhhhcccCCCCccCccccCCcccccccc-------------------------cCCCceE---
Q 039074 209 RPGFQD-VSTIHELPYDHSILLENLMDPAHIPISHDRTDWTAKRE-------------------------DAQPLGF--- 259 (534)
Q Consensus 209 ~~~~~~-~~~~~~~~~~~~~~~EN~lD~~H~~~~H~~~~~~~~r~-------------------------~~~p~~~--- 259 (534)
.+++.. .....+++||||+++||++|+||++++|+++....... ...+..+
T Consensus 175 ~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 254 (412)
T 3vca_A 175 LKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPLDPEVAGVQADGGVSKKLQAHFDRCEAAGTPAQFVLA 254 (412)
T ss_dssp GGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCHHHHTTSCCCHHHHCC----CCCHHHHHHHHHHHHTTCCCSCEEC
T ss_pred CCCeEEeEEEEEEEccCchhhHhhccccccCcccCcchhhcccccccccccccccccccchhhhhhhhhccCCccccccc
Confidence 223322 13456789999999999999999999998764211000 0001111
Q ss_pred -----EEEeec-cCc---cc--c-----ccCCC-CCCCCCeEEEEecCeeeecceeeecCCCCceeEEEEEEEeeeCCCC
Q 039074 260 -----EVTERT-DRG---FA--G-----RWGKE-KDEPLPNFLRFEAPCVLQNNRELVDSKTGEKHYFTGLFLCRPTGQG 322 (534)
Q Consensus 260 -----~v~~~~-~~g---f~--~-----~~~~~-~~~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg 322 (534)
.+.... ..+ +. + .+... ...+......+..||++++.. + + ...++.++|++++
T Consensus 255 ~~g~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~-----p----d-~~~~~~~~P~~~~ 324 (412)
T 3vca_A 255 GDGQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFL-----P----D-HSLTFRVMPISPT 324 (412)
T ss_dssp TTSSEEEEEECCSTTCCSSSSSSSCSCSSCSSCCCSTTCCEEEEEETTTEEEEEC-----S----S-CEEEEEEEEEETT
T ss_pred ccCceeeeeecccccccccccCccccccccccCCcccCCceEEEEECCeEEEEEC-----C----C-EEEEEEEEECCCC
Confidence 111000 000 00 0 00000 112334567889999987543 1 1 2356677899999
Q ss_pred eEEEEEEEecCCCCcc-ccc-chhhhhhhhhhhhHHhHHHHHHHHHHhhhhcCCCccccccccCcCcHHHHHHHHHHHHh
Q 039074 323 KSMLIVRFGATKRSPL-AKL-FPKWYFHQNASKVFEQDMGFLSSQNEVLMKETVPTKELYLNLRSSDTWVAEYRKWMDKV 400 (534)
Q Consensus 323 ~trl~~~~~~~~~~~~-~~~-~p~w~~h~~~~~Vl~eD~~iL~~Qe~~l~~~~~~~k~~y~~~~~aD~~ViafRrWl~~~ 400 (534)
+|++...+..+..... .+. +.. .......|.+||..|++..|+++...... ...|. + .....+..|.+|+.+.
T Consensus 325 ~t~v~~~~~~~~d~~~~~d~~~~~--~~~~~~~~~~ED~~l~e~~Q~G~~S~~y~-~G~~s-p-~~E~~v~~F~~w~~~~ 399 (412)
T 3vca_A 325 ETEVTTTWLVHKDAVEGVDYDLKR--LTEVWIATNDEDREIVETNQQGILSPAYV-PGPYS-P-GQESGVMQFVDWYAAS 399 (412)
T ss_dssp EEEEEEEEEEETTCCBTTTBCHHH--HHHHHHHHHHHHHHHHHHHHHHHTSTTCC-CCBCC-T-TTCHHHHHHHHHHHHH
T ss_pred eEEEEEEEEEccccccCccHHHHH--HHHHHHHHHHHHHHHHHHhhhhhcCCCCC-CCCCC-C-CcchhHHHHHHHHHHH
Confidence 9999877776543211 011 111 11234578899999999999999764321 12232 2 2489999999999975
No 7
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=100.00 E-value=3.7e-42 Score=357.76 Aligned_cols=315 Identities=21% Similarity=0.374 Sum_probs=224.0
Q ss_pred cccccccccCcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCc--ccccEEEccCCCeEE
Q 039074 73 QVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQ--LIDGRLECLYHGWQF 150 (534)
Q Consensus 73 ~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~--i~~~~l~CpyHGW~F 150 (534)
+|.+.+|++.|++||.++||++++++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. ++++.|+||||||+|
T Consensus 22 lE~e~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~F 100 (389)
T 3gkq_A 22 IDAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VDGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTY 100 (389)
T ss_dssp HHCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEEE
T ss_pred hhhhhhhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCCEE
Confidence 588899999999999999999988999999999999999 69999999999999999999997 467899999999999
Q ss_pred ec-CCceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCC-CCCCCCCccccccCCCceeeeeEEEeecChhhh
Q 039074 151 EG-EGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTP-PNPDKLPWFENFARPGFQDVSTIHELPYDHSIL 228 (534)
Q Consensus 151 d~-~G~c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~~-~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (534)
|+ +|+|+.+|..+.. ..+...+|++|||++++|+|||+++++++ +..+.++ +.+.++++.......+++||||.+
T Consensus 101 dl~dG~cv~iP~~P~~-~~~~~~~L~~ypV~e~~G~VfV~lgd~~~ppL~e~l~--~~~~~~~~~~~~~~~~i~~NWK~~ 177 (389)
T 3gkq_A 101 RWDNGKLVDILTNPTS-VQIGRHALKTYPVREEKGLVFLFVGDQEPHDLAEDVP--PGFLDADLAVHGQHRVVDANWRMG 177 (389)
T ss_dssp ETTTCBEEEETTCTTC-TTTTSCBCCBCCEEEETTEEEEEESSSCCCCGGGGSC--TTTTCTTEEEEEEEEEESSCHHHH
T ss_pred ECCCCCeecccCCccc-ccccccCCcEEEEEEECCeEEEecCCCCCCCchhhcc--hhccCCceEEEeEEEEEecCchhh
Confidence 98 8999999986542 23446789999999999999999975432 2222222 234456666555567899999999
Q ss_pred cccCCCCccCccccCCcccccccccCCCce-----------EEEEeeccCccccccCCC-------------------CC
Q 039074 229 LENLMDPAHIPISHDRTDWTAKREDAQPLG-----------FEVTERTDRGFAGRWGKE-------------------KD 278 (534)
Q Consensus 229 ~EN~lD~~H~~~~H~~~~~~~~r~~~~p~~-----------~~v~~~~~~gf~~~~~~~-------------------~~ 278 (534)
+||++|+||+ |+|+++++........+.. ..+.+....|+...+.+. ..
T Consensus 178 ~EN~lD~yH~-~vH~~si~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (389)
T 3gkq_A 178 VENGFDAGHV-FIHKSSILLDGNDIALPLGFAPGDPEQLTRSVTGEGAPKGVFDLLGEHSVPIFEATIEGQPAIQGHMGS 256 (389)
T ss_dssp HHHHTCSGGG-GGGTTCHHHHHTTBCBCSEEEECCGGGSEEEECCTTSCCEEEECSGGGEEEESEEEETTEEEEECBCCS
T ss_pred HHhcchhchh-hCccccccccccccccccccccCCCcceEEEEcCCCCCccHHhhhhccccccccccccCcccccCCCCC
Confidence 9999999999 9999986432221111112 111121234433221110 11
Q ss_pred CCCCeEEEEecCeeeecceeeecCCCCceeEEEEEEEeeeCCCCeEEEEEEEecCCCCccc------ccchhhhhhhhhh
Q 039074 279 EPLPNFLRFEAPCVLQNNRELVDSKTGEKHYFTGLFLCRPTGQGKSMLIVRFGATKRSPLA------KLFPKWYFHQNAS 352 (534)
Q Consensus 279 ~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trl~~~~~~~~~~~~~------~~~p~w~~h~~~~ 352 (534)
......+.+..|++.+.. .+ ++++ ++..-..+|+++.+++++..........-. ++-.+|.. ...+
T Consensus 257 ~~~~~~~s~~lP~v~~v~-~~---~~~~---~~~~~~~vpi~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 328 (389)
T 3gkq_A 257 KMVAISISVWLPGVLKVD-PF---PDPT---LTQFEWYVPIDEGHHLYLQMLGRRVGSEEEARSFEAEFREKWVE-LALN 328 (389)
T ss_dssp BCCCCEEEEETTTEEEEE-SC---SSTT---CEEEEEEEEEETTEEEEEEEEEEECSSHHHHHHHHHHHHHTHHH-HTTT
T ss_pred cccceeEEEEecCeeEec-cC---CCCC---eEEEEEEeeccCCeEEEEEEEEEEcCCHHHHHHHHHHHHHHHHH-Hhhc
Confidence 123467899999998754 22 2332 233444589999998886555543322110 11112322 2356
Q ss_pred hhHHhHHHHHHHHHHhhhhcCCCccccccccCcCcHHHHHHHHHHHHhCCC
Q 039074 353 KVFEQDMGFLSSQNEVLMKETVPTKELYLNLRSSDTWVAEYRKWMDKVGHG 403 (534)
Q Consensus 353 ~Vl~eD~~iL~~Qe~~l~~~~~~~k~~y~~~~~aD~~ViafRrWl~~~~~g 403 (534)
.+.++|+..-+++|+-.+...++.++..+ ..|..++++||...++..|
T Consensus 329 ~f~~~d~~ar~~~~~~y~~~~g~~~e~l~---~~d~~~~~wr~~~~~~~~~ 376 (389)
T 3gkq_A 329 GFNDDDILARRSMEPFYADDRGWREEVLF---ESDRAIIEWRRLASQYNRG 376 (389)
T ss_dssp TTTHHHHHHHHHHHHHHHTSHHHHHCCCC---GGGHHHHHHHHHHHHHCSC
T ss_pred cccchhHHHHHHHHHhhccCCCCChhhcc---CcchhHHHHHHHHHHhccc
Confidence 78899999999999988875444444333 3599999999999999876
No 8
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=100.00 E-value=6.4e-42 Score=356.89 Aligned_cols=313 Identities=18% Similarity=0.370 Sum_probs=224.1
Q ss_pred cccccccccCcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcc--cccEEEccCCCeEE
Q 039074 73 QVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQL--IDGRLECLYHGWQF 150 (534)
Q Consensus 73 ~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i--~~~~l~CpyHGW~F 150 (534)
+|.+++|++.||+||.++||++++++.++++|++|+|+| .+|+++|+.|+|||||++|+.|.+ +++.|+||||||+|
T Consensus 25 LE~~~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~F 103 (394)
T 3gcf_A 25 LEATLGFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTR-AKGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTY 103 (394)
T ss_dssp HHCTTCEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTCEEE
T ss_pred hhhhhhhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCCcEE
Confidence 578899999999999999999988999999999999999 699999999999999999999974 67899999999999
Q ss_pred ec-CCceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCC-CCCCCCCccccccCCCceeeeeEEEeecChhhh
Q 039074 151 EG-EGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTP-PNPDKLPWFENFARPGFQDVSTIHELPYDHSIL 228 (534)
Q Consensus 151 d~-~G~c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~~-~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (534)
|+ +|+|+.+|+.+.. ..+...+|++|||++++|+|||+++++++ +..+.++ +.+.++++.......+++|||+.+
T Consensus 104 dl~dG~cv~iP~~p~~-~~~~~~~L~~ypV~e~~G~VfV~lgd~~~ppL~e~L~--~~~~d~~~~~~~~~~~i~~NWK~~ 180 (394)
T 3gcf_A 104 DLDDGRLVDVLTSPGS-PVIGKIGIKVYPVQVAQGVVFVFIGDEEPHALSEDLP--PGFLDEDTHLLGIRRTVQSNWRLG 180 (394)
T ss_dssp ETTTCBEEEETTSTTC-TTTTSCBCCEECEEEETTEEEEEESSSCCCCGGGGSC--TTTTCTTEEEEEEEEEESSCHHHH
T ss_pred ECCCCceeccCCCccc-ccccccCceEEEEEEECCcEEEecCCCCCCCchhhcc--hhhcCCceEEEeEEEEEecCchhh
Confidence 98 8999999986543 23446789999999999999999975432 2222221 234456666555567899999999
Q ss_pred cccCCCCccCccccCCcccccccccCCCceEEEEee-----------ccCccccccCC---------------------C
Q 039074 229 LENLMDPAHIPISHDRTDWTAKREDAQPLGFEVTER-----------TDRGFAGRWGK---------------------E 276 (534)
Q Consensus 229 ~EN~lD~~H~~~~H~~~~~~~~r~~~~p~~~~v~~~-----------~~~gf~~~~~~---------------------~ 276 (534)
+||++|+||+ |+|++++.. +++..+..+++... ...|....+.+ +
T Consensus 181 ~EN~lD~yH~-~vH~~ti~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~pv~~~~~~~~~~~~~~~~~ 257 (394)
T 3gcf_A 181 VENGFDTTHI-FMHRNSPWV--SGNRLAFPYGFVPADRDAMQVYDENWPKGVLDRLSENYMPVFEATLDGETVLSAELTG 257 (394)
T ss_dssp HHHHSCSSGG-GGGTTCHHH--HHTTBCCCSEEEECSTTSEEEECSSSSCEEEECHHHHEEEECEEEETTEEEEECCCCS
T ss_pred Hhhccccchh-hCchhhhcc--cccccccCcceeEcCCceEEeccCCCCcchhhhhhccccccccccccccccccccccC
Confidence 9999999999 999998642 22222233333221 12231111100 1
Q ss_pred CCCCCCeEEEEecCeeeecceeeecCCCCceeEEEEEEEeeeCCCCeEEEEEEEecCCCCccc------ccchhhhhhhh
Q 039074 277 KDEPLPNFLRFEAPCVLQNNRELVDSKTGEKHYFTGLFLCRPTGQGKSMLIVRFGATKRSPLA------KLFPKWYFHQN 350 (534)
Q Consensus 277 ~~~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trl~~~~~~~~~~~~~------~~~p~w~~h~~ 350 (534)
........+.+..|++.+.. .+ +++.. ...-..+|+++.+++++..........-. ++-.+|.. ..
T Consensus 258 ~~~~~~~~~s~~lP~v~~v~-~~---p~~~~---~~~~~~vPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 329 (394)
T 3gcf_A 258 EEKKVAAQVSVWLPGVLKVD-PF---PDPTL---IQYEFYVPISETQHEYFQVLQRKVEGPEDVKTFEVEFEERWRD-DA 329 (394)
T ss_dssp SCBCCCSEEEEETTTEEEEE-SC---SSTTC---EEEEEEEESSSSCEEEEEEEEEECSSHHHHHHHHHHHHHTHHH-HT
T ss_pred cccccceeEEEEecCeeEec-cC---CCCCe---EEEEEEeeccCCeEEEEEEEEEECCCHHHHHHHHHHHHHHhHH-Hh
Confidence 11123457899999998754 22 34432 23334589999999886554433322110 11112322 23
Q ss_pred hhhhHHhHHHHHHHHHHhhhhcCCCccccccccCcCcHHHHHHHHHHHHhCCC
Q 039074 351 ASKVFEQDMGFLSSQNEVLMKETVPTKELYLNLRSSDTWVAEYRKWMDKVGHG 403 (534)
Q Consensus 351 ~~~Vl~eD~~iL~~Qe~~l~~~~~~~k~~y~~~~~aD~~ViafRrWl~~~~~g 403 (534)
.+.+.++|+..-+++|+-.+...++.++..+ ..|..++++||...+++.|
T Consensus 330 ~~~f~~~d~~ar~~~~~~y~~~~g~~~e~l~---~~d~~~~~~r~~~~~~~~~ 379 (394)
T 3gcf_A 330 LHGFNDDDVWAREAQQEFYGERDGWSKEQLF---PPDMCIVKWRTLASERGRG 379 (394)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHSCHHHHCCCC---GGGHHHHHHHHHHHHHCSE
T ss_pred hcccchhhHHHHHHHHHhhcccCCCChhhcc---CcchhHHHHHHHHHHhccc
Confidence 5778899999999999999876555444433 3499999999999999876
No 9
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=100.00 E-value=9.9e-38 Score=335.79 Aligned_cols=190 Identities=16% Similarity=0.282 Sum_probs=155.6
Q ss_pred ccccCCCCcccccccccccccccccCcEEeeecCCCCC-CCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCc
Q 039074 57 KVLVGPASAEERRGERQVADYDWTEEWYPLYLTKDVPD-DAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQ 135 (534)
Q Consensus 57 ~~~~p~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~ 135 (534)
...+|.++|+|+++++.|.+.+|.+.|++||+++||++ +..+.++++|++|+|+|+.+|+++||.|+|||||++|+.|.
T Consensus 12 ~~~~~~~~y~~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~ 91 (454)
T 2gbw_A 12 NASQSRQVFWDEDVYALEIERIFSRAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDGTFRAFINSCSHRGNQICHAD 91 (454)
T ss_dssp TTEEEGGGGTCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCCS
T ss_pred CCccCHHHcCCHHHHHHHHHHHhhcCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEeccCCCCCCCCcccc
Confidence 35789999999999999999999999999999999985 55688899999999999999999999999999999999987
Q ss_pred c-cccEEEccCCCeEEecCCceeecCCCCCCC--CCC-ccCccceEEEEEecCeEEEEcCCCCCCCCCCCCc----cccc
Q 039074 136 L-IDGRLECLYHGWQFEGEGKCVKIPQLPADA--KIP-RSACVRTYEVKESQGVVWVWMSQKTPPNPDKLPW----FENF 207 (534)
Q Consensus 136 i-~~~~l~CpyHGW~Fd~~G~c~~iP~~~~~~--~~~-~~~~l~~~pv~~~~G~Vwv~~~~~~~~~~~~lP~----~~~~ 207 (534)
. +++.|+||||||+||+||+|+.+|..+... .++ +..+|++|+|++++|+|||++++++++..+.++. ++.+
T Consensus 92 ~g~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p~~~~~l~~~~~~l~~~ 171 (454)
T 2gbw_A 92 SGNAKAFVCNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAPSLEDYLGEFRYYLDTI 171 (454)
T ss_dssp EEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTCCCHHHHHGGGHHHHHHH
T ss_pred cCCcCEEEeCCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCCCCHHHHhhhhHHHHHHH
Confidence 6 578999999999999999999999864322 233 3568999999999999999998765433222221 1111
Q ss_pred -cC--CCceee--eeEEEeecChhhhcccC-CCCccCccccCCcc
Q 039074 208 -AR--PGFQDV--STIHELPYDHSILLENL-MDPAHIPISHDRTD 246 (534)
Q Consensus 208 -~~--~~~~~~--~~~~~~~~~~~~~~EN~-lD~~H~~~~H~~~~ 246 (534)
+. .++... ....+++||||+++||+ +|+||++++|..++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~H~~~~ 216 (454)
T 2gbw_A 172 WEGAGGGMELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAAL 216 (454)
T ss_dssp HTTTTTCEEEEEEEEEEEESSCTHHHHHHHHHBCTTHHHHTHHHH
T ss_pred HhcCCCceEEEeeEEEEEeCCCccchhhhcCCccCCCCcCCHhHH
Confidence 21 334433 23568999999999999 79999999996543
No 10
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=100.00 E-value=3.3e-37 Score=332.98 Aligned_cols=191 Identities=17% Similarity=0.296 Sum_probs=155.0
Q ss_pred CccccCCCCcccccccccccccccccCcEEeeecCCCCCCC-cEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccC
Q 039074 56 HKVLVGPASAEERRGERQVADYDWTEEWYPLYLTKDVPDDA-PLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEG 134 (534)
Q Consensus 56 ~~~~~p~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~~~-~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G 134 (534)
....+|.++|+|+++++.|.+.+|.+.|++||+++||++++ .+.++++|++|+|+|+.+|+++||.|+|||||++|+.|
T Consensus 19 ~~~~lp~~~Ytd~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~C~Hrga~L~~g 98 (470)
T 2b1x_A 19 SDWTVPAAIINDPEVHDVERERIFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRA 98 (470)
T ss_dssp TTCEEEGGGSSCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCS
T ss_pred CCCcCCHHHcCCHHHHHHHHHHHhhcCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEecccCCCCCEeecc
Confidence 36678999999999999999999999999999999999744 57889999999999999999999999999999999999
Q ss_pred ccc-ccEEEccCCCeEEecCCceeecCCCCCCC--CCC-ccCccceE-EEEEecCeEEEEcCCCCCCCCCCCCcc----c
Q 039074 135 QLI-DGRLECLYHGWQFEGEGKCVKIPQLPADA--KIP-RSACVRTY-EVKESQGVVWVWMSQKTPPNPDKLPWF----E 205 (534)
Q Consensus 135 ~i~-~~~l~CpyHGW~Fd~~G~c~~iP~~~~~~--~~~-~~~~l~~~-pv~~~~G~Vwv~~~~~~~~~~~~lP~~----~ 205 (534)
.+. ++.|+||||||+||.||+|+.+|..+... .++ +..++..+ .|++++|+|||++++++++..+.++.+ +
T Consensus 99 ~~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~~~~~~~~l~~~~~~~d 178 (470)
T 2b1x_A 99 EMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHADSLEDYLGDLKFYLD 178 (470)
T ss_dssp SEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTTCCCHHHHHGGGHHHHH
T ss_pred CcCCCCEEEECCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCCCCCHHHHhcchhHHHH
Confidence 876 47999999999999999999999864321 233 34678888 577789999999987654322222211 1
Q ss_pred cc---cCCCceee--eeEEEeecChhhhcccC-CCCccCccccCCcc
Q 039074 206 NF---ARPGFQDV--STIHELPYDHSILLENL-MDPAHIPISHDRTD 246 (534)
Q Consensus 206 ~~---~~~~~~~~--~~~~~~~~~~~~~~EN~-lD~~H~~~~H~~~~ 246 (534)
.+ ...++... ....+++||||+++||+ +|+||++++|+++.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~ 225 (470)
T 2b1x_A 179 IVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMV 225 (470)
T ss_dssp HHHCSSSSCEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHH
T ss_pred HHhccCCCCeEEEeeeEEEEeccCHhhhhhccccccCcccccChhhh
Confidence 11 12344433 34568999999999999 99999999999764
No 11
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=100.00 E-value=6.8e-38 Score=336.47 Aligned_cols=189 Identities=16% Similarity=0.251 Sum_probs=154.4
Q ss_pred cccC-CCCcccccccccccccccccCcEEeeecCCCCC-CCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCc
Q 039074 58 VLVG-PASAEERRGERQVADYDWTEEWYPLYLTKDVPD-DAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQ 135 (534)
Q Consensus 58 ~~~p-~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~ 135 (534)
..+| .++|+|+++++.|.+.+|.+.|++||+++||++ +..+.++++|++|+|+|+.+|+++||.|+|||||++|+.|.
T Consensus 11 ~~~~~~~~y~~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~ 90 (447)
T 2bmo_A 11 GLTQKLLIHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAE 90 (447)
T ss_dssp GCEEEGGGGTCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBCCCSS
T ss_pred CCCCccceeCCHHHHHHHHHHhhccCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCCCCEEEEeccCcCCCCCccccc
Confidence 4578 999999999999999999999999999999985 45688999999999999999999999999999999999998
Q ss_pred c-cccEEEccCCCeEEecCCceeecCCCCCCC--CCC-ccCccceEE-EEEecCeEEEEcCCCCCCCCCCCCcc----cc
Q 039074 136 L-IDGRLECLYHGWQFEGEGKCVKIPQLPADA--KIP-RSACVRTYE-VKESQGVVWVWMSQKTPPNPDKLPWF----EN 206 (534)
Q Consensus 136 i-~~~~l~CpyHGW~Fd~~G~c~~iP~~~~~~--~~~-~~~~l~~~p-v~~~~G~Vwv~~~~~~~~~~~~lP~~----~~ 206 (534)
+ +++.|+||||||+||.||+|+.+|+.+... .++ ++.+|++|| |++++|+|||++++++++..+.++.+ +.
T Consensus 91 ~g~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~~~l~~~l~~~~~~~~~ 170 (447)
T 2bmo_A 91 AGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGDAAWYLEP 170 (447)
T ss_dssp EEECSEEECTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTCCCHHHHHTTHHHHHHH
T ss_pred cCCcCeEECCCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCCCCHHHHhccHHHHHHH
Confidence 7 578999999999999999999999753211 233 356899998 99999999999987654332222211 11
Q ss_pred c-c-CCCceee--eeEEEeecChhhhcccC-CCCccCccccCCcc
Q 039074 207 F-A-RPGFQDV--STIHELPYDHSILLENL-MDPAHIPISHDRTD 246 (534)
Q Consensus 207 ~-~-~~~~~~~--~~~~~~~~~~~~~~EN~-lD~~H~~~~H~~~~ 246 (534)
+ + ..++... ....++++|||+++||+ +|+||++++|..++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~~D~yH~~~~H~~~l 215 (447)
T 2bmo_A 171 TFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAAL 215 (447)
T ss_dssp HHTTTSCEEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHH
T ss_pred HhccCCCeEEeeeeEEEEECCCcchhhhcCCCCCCCCcccchhhh
Confidence 1 1 2344443 23568999999999999 79999999997554
No 12
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=100.00 E-value=4.3e-37 Score=329.44 Aligned_cols=191 Identities=15% Similarity=0.230 Sum_probs=159.2
Q ss_pred CccccCCCCcccccccccccccccccCcEEeeecCCCCCC-CcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccC
Q 039074 56 HKVLVGPASAEERRGERQVADYDWTEEWYPLYLTKDVPDD-APLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEG 134 (534)
Q Consensus 56 ~~~~~p~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~~-~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G 134 (534)
....+|.+.|+|+++|+.|.+.+|.+.|++|++++||++. ..+.++++|++|||+|+.+|+++||.|+|||||++|+.|
T Consensus 31 ~~~~~~~~~Ytd~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~dG~v~A~~n~C~Hrga~L~~g 110 (457)
T 3gzx_A 31 DNGKLDARIYADQDLYQLELERVFGRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKVFLNQCRHRGMRIVRS 110 (457)
T ss_dssp TTTEEEGGGGTCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCS
T ss_pred cCCcCCHHHcCCHHHHHHHHHHHHhcCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCCCeEEEEeCcCCCCCcCccCC
Confidence 3567899999999999999999999999999999999864 468999999999999999999999999999999999998
Q ss_pred c-ccccEEEccCCCeEEecCCceeecCCCCC-------CCC-CC-ccCccceEEEEEecCeEEEEcCCCCCCCCCCCCcc
Q 039074 135 Q-LIDGRLECLYHGWQFEGEGKCVKIPQLPA-------DAK-IP-RSACVRTYEVKESQGVVWVWMSQKTPPNPDKLPWF 204 (534)
Q Consensus 135 ~-i~~~~l~CpyHGW~Fd~~G~c~~iP~~~~-------~~~-~~-~~~~l~~~pv~~~~G~Vwv~~~~~~~~~~~~lP~~ 204 (534)
. +.++.|+||||||+||.+|+|+.+|..+. +.. ++ ++.+|++|+|++++|+||||+++++++..+.++.+
T Consensus 111 ~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~~~~~ap~l~e~lg~~ 190 (457)
T 3gzx_A 111 DGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEAPDLKTYLSDA 190 (457)
T ss_dssp SEEECSEEECTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEESCTTSCCHHHHTTTC
T ss_pred CCCcCCEEEcCCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEecCCCCCChHHHHhhh
Confidence 7 46789999999999999999999998532 122 43 35789999999999999999998765544444332
Q ss_pred c----cc-cC--CCceee--eeEEEeecChhhhcccC-CCCccCc-cccCCcc
Q 039074 205 E----NF-AR--PGFQDV--STIHELPYDHSILLENL-MDPAHIP-ISHDRTD 246 (534)
Q Consensus 205 ~----~~-~~--~~~~~~--~~~~~~~~~~~~~~EN~-lD~~H~~-~~H~~~~ 246 (534)
. .+ +. .++..+ .....++||||+++||+ +|+||++ ++|..++
T Consensus 191 ~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~ 243 (457)
T 3gzx_A 191 MPYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGV 243 (457)
T ss_dssp HHHHHHHHSSSTTCEEECSCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHH
T ss_pred HHHHHHHhccCCCceEEEcceEEEEEccccchhhhccccccCCcccceehhhh
Confidence 2 11 21 244443 24567999999999999 8999999 9998764
No 13
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=100.00 E-value=4.4e-36 Score=323.30 Aligned_cols=190 Identities=16% Similarity=0.292 Sum_probs=153.8
Q ss_pred CccccCCCCcccccccccccccccccCcEEeeecCCCCCCC-cEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccC
Q 039074 56 HKVLVGPASAEERRGERQVADYDWTEEWYPLYLTKDVPDDA-PLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEG 134 (534)
Q Consensus 56 ~~~~~p~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~~~-~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G 134 (534)
....+|.++|+|+++++.|.+.+|.+.|++||+++||++++ .+.++++|++|+|+|+.+|+++||.|+|||||++|+.|
T Consensus 29 ~~~~~p~~~y~d~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g 108 (460)
T 1uli_A 29 RTGRLDPRIYTDEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFLNQCRHRGMRICRA 108 (460)
T ss_dssp TTTEECGGGGTCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCS
T ss_pred cCCcCCHHHcCCHHHHHHHHHHhhhcCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEeeeCCCCCCCCccc
Confidence 34578999999999999999999999999999999998755 47889999999999999999999999999999999998
Q ss_pred cc-cccEEEccCCCeEEecCCceeecCCCCCC-CCCC-ccCccceEEEEEecCeEEEEcCCCCCCCCCCCCcc----cc-
Q 039074 135 QL-IDGRLECLYHGWQFEGEGKCVKIPQLPAD-AKIP-RSACVRTYEVKESQGVVWVWMSQKTPPNPDKLPWF----EN- 206 (534)
Q Consensus 135 ~i-~~~~l~CpyHGW~Fd~~G~c~~iP~~~~~-~~~~-~~~~l~~~pv~~~~G~Vwv~~~~~~~~~~~~lP~~----~~- 206 (534)
.. +++.|+||||||+||.||+|+.+|+.+.. ..++ ++.+|++|+|++++|+|||++++++++..+.++.+ +.
T Consensus 109 ~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~l~~~l~~~~~~l~~~ 188 (460)
T 1uli_A 109 DGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAPDLDTYLGEAKFYMDHM 188 (460)
T ss_dssp SEEECSCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCTTSCCHHHHHTTHHHHHHHH
T ss_pred cCCCCCEEEcCCCCCEEeCCCCEeeCCccccccCCCCHhHcCCceeeEEEECCEEEEEeCCCCCCHHHHhcchHHHHHHH
Confidence 76 46799999999999999999999975321 1343 35789999999999999999987654332222211 11
Q ss_pred ccC--CCceee--eeEEEeecChhhhcccC-CCCccC-ccccCCc
Q 039074 207 FAR--PGFQDV--STIHELPYDHSILLENL-MDPAHI-PISHDRT 245 (534)
Q Consensus 207 ~~~--~~~~~~--~~~~~~~~~~~~~~EN~-lD~~H~-~~~H~~~ 245 (534)
++. .++..+ ....+++||||+++||+ +|+||+ .++|...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~~H~~~ 233 (460)
T 1uli_A 189 LDRTEAGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSG 233 (460)
T ss_dssp HCSSTTCEEECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHH
T ss_pred hhcCCCceEEEeeEEEEEeccCHHHHHhhcCCCCCCchhhhhhhc
Confidence 111 223321 23568999999999999 799999 6889744
No 14
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.94 E-value=1.5e-26 Score=198.95 Aligned_cols=101 Identities=29% Similarity=0.475 Sum_probs=94.0
Q ss_pred cCcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEec-CCceeec
Q 039074 81 EEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKI 159 (534)
Q Consensus 81 ~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~-~G~c~~i 159 (534)
..|++|+.++||++++.+.+++.|++|+|+| .+|+++|++|+|||||++|++|.++++.|+||||||+||. +|+|+..
T Consensus 2 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~~G~~~~~ 80 (103)
T 2qpz_A 2 VKWIEAVALSDILEGDVLGVTVEGKELALYE-VEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCA 80 (103)
T ss_dssp CCEEEEEETTSCCTTCEEEEEETTEEEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEET
T ss_pred CccEEEEEHHHcCCCCEEEEEECCEEEEEEE-ECCEEEEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCCCCCEeCC
Confidence 3699999999999988899999999999999 6999999999999999999999999999999999999998 9999998
Q ss_pred CCCCCCCCCCccCccceEEEEEecCeEEEEcC
Q 039074 160 PQLPADAKIPRSACVRTYEVKESQGVVWVWMS 191 (534)
Q Consensus 160 P~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~ 191 (534)
|.. .+|++|||++++|.|||+++
T Consensus 81 P~~---------~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 81 PVT---------QNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp TCC---------SCCCEECEEEETTEEEEECC
T ss_pred CCC---------CCCCEEeEEEECCEEEEEcC
Confidence 842 36899999999999999974
No 15
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.94 E-value=1.5e-26 Score=201.67 Aligned_cols=105 Identities=21% Similarity=0.390 Sum_probs=95.8
Q ss_pred CcEEeeecCCCCCCCcEEEEE-cCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEec-CCceeec
Q 039074 82 EWYPLYLTKDVPDDAPLGLTV-FDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKI 159 (534)
Q Consensus 82 ~W~~v~~~~dl~~~~~~~~~l-~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~-~G~c~~i 159 (534)
.|++|+.++||++++.+.+++ .|++|+|+|+.+|+++|++|+|||||++|++|.++++.|+||||||+||. +|+|+.
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~tG~~~~- 79 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN- 79 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceEcCCEEEcCCCCCEEeCCCccCCC-
Confidence 499999999999988899999 99999999998999999999999999999999998899999999999999 599997
Q ss_pred CCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCC
Q 039074 160 PQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPP 196 (534)
Q Consensus 160 P~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~~~ 196 (534)
|. ...|++|+|++++|+|||++++.+++
T Consensus 80 p~---------~~~L~~~~v~~~~g~v~v~~~~~~~~ 107 (111)
T 1vm9_A 80 PD---------DAALAEYPVEVKGDDIYVSTKGILPN 107 (111)
T ss_dssp SS---------SCBCCEECEEEETTEEEECCTTCCCC
T ss_pred CC---------cCCcCEEEEEEECCEEEEeccCcCCC
Confidence 52 34699999999999999999876543
No 16
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.94 E-value=1.7e-26 Score=202.86 Aligned_cols=104 Identities=24% Similarity=0.421 Sum_probs=95.4
Q ss_pred cCcEEeeecCCCCCCCcEEEEEcCE-EEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEec-CCceee
Q 039074 81 EEWYPLYLTKDVPDDAPLGLTVFDQ-QIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVK 158 (534)
Q Consensus 81 ~~W~~v~~~~dl~~~~~~~~~l~g~-~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~-~G~c~~ 158 (534)
+.|++|+.++||++++++.+++.|+ +|+|+|+ +|+++|++|+|||+|++|++|.++++.|+||||||+||+ +|+|+.
T Consensus 3 ~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~ 81 (115)
T 2de6_D 3 QIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV-GDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPAS 81 (115)
T ss_dssp -CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE-TTEEEEEESBCTTSSCBGGGSEEETTEEECTTTCCEEETTTCCEEE
T ss_pred cceEEeEEHHHCCCCCeEEEEECCccEEEEEEE-CCEEEEEeCCCCCCCCCCcCCEEeCCEEECCCCCCEEcCCCcCEeC
Confidence 5799999999999888899999999 9999998 899999999999999999999999999999999999997 999999
Q ss_pred cCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCC
Q 039074 159 IPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKT 194 (534)
Q Consensus 159 iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~ 194 (534)
+|.. ..|++|||++++|.|||++++..
T Consensus 82 ~P~~---------~~L~~~~v~~~~g~V~v~~~~~~ 108 (115)
T 2de6_D 82 SPCT---------VPLGVFEVEVKEGEVYVAGEKKL 108 (115)
T ss_dssp TTCC---------SCCCEEEEEESSSEEEEEEEEC-
T ss_pred CCCc---------CCCCEEEEEEECCEEEEecCCcc
Confidence 8852 46899999999999999987543
No 17
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.94 E-value=2.7e-26 Score=200.55 Aligned_cols=103 Identities=24% Similarity=0.368 Sum_probs=95.4
Q ss_pred CcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccC-cccccEEEccCCCeEEec-CCceeec
Q 039074 82 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEG-QLIDGRLECLYHGWQFEG-EGKCVKI 159 (534)
Q Consensus 82 ~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G-~i~~~~l~CpyHGW~Fd~-~G~c~~i 159 (534)
.|++|+.++||++++.+.+++.|++|+|+|+ +|+++||+|+|||||++|++| .++++.|+||||||+||. ||+|+.+
T Consensus 5 ~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~~i~CP~Hg~~Fd~~tG~~~~~ 83 (112)
T 1fqt_A 5 KFTRVCDRRDVPEGEALKVESGGTSVAIFNV-DGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSP 83 (112)
T ss_dssp CCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-TTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEES
T ss_pred ceEEeEeHHHCCCCCeEEEEECCEEEEEEEE-CCEEEEEECCCCCCCcCCCCCCEEcCCEEECCCCCCEEeCCCCcEeCC
Confidence 6999999999999888999999999999998 899999999999999999999 888899999999999999 8999998
Q ss_pred CCCCCCCCCCccCccceEEEEEecCeEEEEcCCCC
Q 039074 160 PQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKT 194 (534)
Q Consensus 160 P~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~ 194 (534)
|. ..+|++|||++++|+|||++++..
T Consensus 84 P~---------~~~L~~~~v~~~~g~v~v~~~~~~ 109 (112)
T 1fqt_A 84 PP---------CEALKIFPIRIEDNDVLVDFEAGY 109 (112)
T ss_dssp SC---------CSCCCBCCEEEETTEEEECTTCCB
T ss_pred CC---------CCCccEEEEEEECCEEEEEecccc
Confidence 84 246899999999999999997543
No 18
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.94 E-value=9e-27 Score=202.17 Aligned_cols=102 Identities=24% Similarity=0.370 Sum_probs=94.0
Q ss_pred CcEEeeecCCCCCCCcEEEEEcCEE-EEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEec-CCceeec
Q 039074 82 EWYPLYLTKDVPDDAPLGLTVFDQQ-IVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKI 159 (534)
Q Consensus 82 ~W~~v~~~~dl~~~~~~~~~l~g~~-lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~-~G~c~~i 159 (534)
.|++|+.++||++++.+.+++.|++ |+|+|+ +|+++|++|+|||+|++|++|.++++.|+||||||+||+ +|+|+.+
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~ 81 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV-DGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAF 81 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETTTCCBCST
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE-CCEEEEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCCCcCEeCC
Confidence 5999999999999888999999999 999998 999999999999999999999999999999999999997 9999988
Q ss_pred CCCCCCCCCCccCccceEEEEEecCeEEEEcCCC
Q 039074 160 PQLPADAKIPRSACVRTYEVKESQGVVWVWMSQK 193 (534)
Q Consensus 160 P~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~ 193 (534)
|.. ..|++|+|++++|.|||+++++
T Consensus 82 P~~---------~~L~~~~v~~~~g~v~v~~~~~ 106 (108)
T 2i7f_A 82 PCQ---------IPIKTYPVTIEDGWVCIDQPKE 106 (108)
T ss_dssp TCC---------SCCCEECEEEETTEEEEECC--
T ss_pred CCC---------CCccEEeEEEECCEEEEeCCCC
Confidence 742 4689999999999999999764
No 19
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.93 E-value=2e-26 Score=199.24 Aligned_cols=102 Identities=23% Similarity=0.316 Sum_probs=94.6
Q ss_pred CcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEec-CCceeecC
Q 039074 82 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKIP 160 (534)
Q Consensus 82 ~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~-~G~c~~iP 160 (534)
+|++|+.++||++++.+.+++.|++|+|+|. +|+++|++|+|||+|++|++|.++++.|+||||||+||+ +|+|+..|
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~P 79 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCNV-DGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALP 79 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETT
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-CCEEEEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence 5999999999999888999999999999995 899999999999999999999999999999999999996 99999988
Q ss_pred CCCCCCCCCccCccceEEEEEecCeEEEEcCCC
Q 039074 161 QLPADAKIPRSACVRTYEVKESQGVVWVWMSQK 193 (534)
Q Consensus 161 ~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~ 193 (534)
. ..+|++|||++++|.|||++++.
T Consensus 80 ~---------~~~L~~~~v~~~~g~v~v~~~~~ 103 (106)
T 3dqy_A 80 A---------CKPIKVFPIKVEGDEVHVDLDNG 103 (106)
T ss_dssp C---------CSCCCEECEEEETTEEEECGGGC
T ss_pred C---------CCCccEEEEEEECCEEEEEcccc
Confidence 5 24689999999999999998754
No 20
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.93 E-value=5.4e-26 Score=203.94 Aligned_cols=110 Identities=17% Similarity=0.269 Sum_probs=97.7
Q ss_pred CcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCC-cEEEEeCCCCCCCC-ccccCcccc--c--EEEccCCCeEEec-CC
Q 039074 82 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNG-ELRCYQDRCPHRLA-KLSEGQLID--G--RLECLYHGWQFEG-EG 154 (534)
Q Consensus 82 ~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G-~~~a~~d~CpHRga-~Ls~G~i~~--~--~l~CpyHGW~Fd~-~G 154 (534)
.|++|+.++||++++.+.+++.|++|+|||+.+| +++|++|+|||||+ +|++|.+.+ | .|+||||||+||. ||
T Consensus 3 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 82 (130)
T 2jza_A 3 QWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDG 82 (130)
T ss_dssp SEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTC
T ss_pred ceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCCc
Confidence 6999999999998888999999999999998777 99999999999999 599999852 3 8999999999999 99
Q ss_pred ceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCCCCCCC
Q 039074 155 KCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKL 201 (534)
Q Consensus 155 ~c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~~~~~~~~l 201 (534)
+|+.+|. .+|++|||++++|.|||++++.+.+..+.+
T Consensus 83 ~~~~~P~----------~~L~~~~v~v~~g~V~V~~~~~~~~~~~~~ 119 (130)
T 2jza_A 83 FCLEDGA----------YSVAAYDTQVTNGNVQISIADSDVAVDNSQ 119 (130)
T ss_dssp CBSSCCS----------SCCBCCCEEESSSEEEEECCCCCCCCCCCC
T ss_pred CCCCCCc----------CcceEEEEEEECCEEEEEeCCCCCCccccc
Confidence 9998873 468999999999999999987765554443
No 21
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.93 E-value=8.3e-26 Score=197.67 Aligned_cols=100 Identities=19% Similarity=0.328 Sum_probs=91.9
Q ss_pred CcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCC-cEEEEeCCCCCCCC-ccccCcccc--c--EEEccCCCeEEec-CC
Q 039074 82 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNG-ELRCYQDRCPHRLA-KLSEGQLID--G--RLECLYHGWQFEG-EG 154 (534)
Q Consensus 82 ~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G-~~~a~~d~CpHRga-~Ls~G~i~~--~--~l~CpyHGW~Fd~-~G 154 (534)
.|++|+.++||++++.+.+++.|++|+|||+.+| +++|++|+||||++ +|++|.+.+ + .|+||||||+||. +|
T Consensus 6 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~tG 85 (113)
T 2jo6_A 6 QWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDG 85 (113)
T ss_dssp CCEEEEETTTSCTTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTT
T ss_pred hheEEeeHHHCCCCCeEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCCCc
Confidence 5999999999998888999999999999999899 69999999999999 899999852 3 8999999999999 99
Q ss_pred ceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcC
Q 039074 155 KCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMS 191 (534)
Q Consensus 155 ~c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~ 191 (534)
+|+.+|. .+|++|||++++|+|||+++
T Consensus 86 ~~~~~P~----------~~l~~~~v~v~~g~V~v~~~ 112 (113)
T 2jo6_A 86 LCMEDEQ----------FSVKHYEARVKDGVVQLRGG 112 (113)
T ss_dssp EETTTTT----------TCCCEEEEEEETTEEEEECC
T ss_pred cCCCCCc----------ccccEEeEEEECCEEEEEcC
Confidence 9998873 46899999999999999985
No 22
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.93 E-value=4.7e-26 Score=201.21 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=94.8
Q ss_pred cCcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCC-ccccCccccc----EEEccCCCeEEec-CC
Q 039074 81 EEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLA-KLSEGQLIDG----RLECLYHGWQFEG-EG 154 (534)
Q Consensus 81 ~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga-~Ls~G~i~~~----~l~CpyHGW~Fd~-~G 154 (534)
..|++|+.++||++++++.+++.|++|+|||+.+|+++|++|+||||++ +|++|.++++ .|+||||||+||. +|
T Consensus 4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 83 (119)
T 3c0d_A 4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSG 83 (119)
T ss_dssp CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTC
T ss_pred CccEEEEEHHHCCCCCeEEEEECCeEEEEEEecCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCCC
Confidence 4799999999999988999999999999999989999999999999999 8999998643 8999999999999 99
Q ss_pred ceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCC
Q 039074 155 KCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQK 193 (534)
Q Consensus 155 ~c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~ 193 (534)
+|+.+|. .+|++|||++++|.|||++++.
T Consensus 84 ~~~~~P~----------~~l~~~~v~v~~g~V~v~~~~~ 112 (119)
T 3c0d_A 84 QCLEDEA----------HCLKTWRVTVDDNQVCYLAKEL 112 (119)
T ss_dssp BBSSCTT----------CBCCEECEEESSSEEEEECCCC
T ss_pred cCCCCCC----------ceeeEEEEEEECCEEEEEeCCc
Confidence 9998873 4689999999999999999764
No 23
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.93 E-value=1.2e-25 Score=199.28 Aligned_cols=102 Identities=19% Similarity=0.265 Sum_probs=94.0
Q ss_pred CcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccC--cccccEEEccCCCeEEec-CCceee
Q 039074 82 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEG--QLIDGRLECLYHGWQFEG-EGKCVK 158 (534)
Q Consensus 82 ~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G--~i~~~~l~CpyHGW~Fd~-~G~c~~ 158 (534)
.|++|+.++||++++++.+++.|++|+|+|+ +|+++|++|+|||+|++|++| .++++.|+||||||+||+ +|+|+.
T Consensus 10 ~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~g~~~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~~ 88 (121)
T 3gce_A 10 TPVRVATLDQLKPGVPTAFDVDGDEVMVVRD-GDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTA 88 (121)
T ss_dssp CCEEEEEGGGSCTTCCEEEEETTEEEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEEE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-CCEEEEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEeC
Confidence 5999999999999889999999999999997 899999999999999999999 888899999999999996 999999
Q ss_pred cCCCCCCCCCCccCccceEEEEEecCeEEEEcCCC
Q 039074 159 IPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQK 193 (534)
Q Consensus 159 iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~~~ 193 (534)
+|.. .+|++|||++++|.|||+++..
T Consensus 89 ~P~~---------~~L~~~~v~v~~g~V~v~~~~~ 114 (121)
T 3gce_A 89 LPCV---------LPVRAYDVVVDGTEILVAPKEA 114 (121)
T ss_dssp TTCC---------SCCCBCCEEEETTEEEECCC--
T ss_pred CCCc---------CCcceEEEEEECCEEEEEECcc
Confidence 8852 4689999999999999998754
No 24
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.93 E-value=2.5e-26 Score=212.74 Aligned_cols=115 Identities=22% Similarity=0.356 Sum_probs=96.0
Q ss_pred cccCcEEeeecCCCCCCCcEEEEEcCEEEEEEEecCCcEEEEeCCCCCCCCccccCcccc----cEEEccCCCeEEec-C
Q 039074 79 WTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLID----GRLECLYHGWQFEG-E 153 (534)
Q Consensus 79 ~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~----~~l~CpyHGW~Fd~-~ 153 (534)
..+.|++|+.++||++++++.+++.|++|+|+|. +|+++||+|+|||||++|++|.+++ +.|+||||||+||. +
T Consensus 13 ~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~-~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~t 91 (157)
T 3d89_A 13 KKYTSVCVGREEDIRKSERMTAVVHDREVVIFYH-KGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLAT 91 (157)
T ss_dssp -CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEEE-TTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred CCCceEEEEEHHHCCCCCeEEEEECCEEEEEEEE-CCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecCC
Confidence 3568999999999988888999999999999994 8999999999999999999999864 68999999999999 9
Q ss_pred Cceee--c-CCCCCCC-C-CCccCccceEEEEEecCeEEEEcCCCC
Q 039074 154 GKCVK--I-PQLPADA-K-IPRSACVRTYEVKESQGVVWVWMSQKT 194 (534)
Q Consensus 154 G~c~~--i-P~~~~~~-~-~~~~~~l~~~pv~~~~G~Vwv~~~~~~ 194 (534)
|+|+. | |...+.. . .++..+|++|+|++++|+|||++++.+
T Consensus 92 G~~~~~~i~P~~~~~~~~~~~~~~~L~~~~v~v~~G~V~V~~~~~~ 137 (157)
T 3d89_A 92 GEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSKEP 137 (157)
T ss_dssp CEEEEEECCCC-----CEEEEEEECSCEEEEEEETTEEEEECCCCS
T ss_pred cCEEEeccCCCccccccccccccCcceEEEEEEECCEEEEEeCCCC
Confidence 99996 4 6432110 0 012467999999999999999998654
No 25
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.93 E-value=6e-26 Score=200.50 Aligned_cols=101 Identities=15% Similarity=0.273 Sum_probs=88.6
Q ss_pred cCcEEeeecCCCCCCCcEEEEEc-CEEEEEEEecCCcEEEEeCCCCCCCCccccCcccc-----cEEEccCCCeEEec-C
Q 039074 81 EEWYPLYLTKDVPDDAPLGLTVF-DQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLID-----GRLECLYHGWQFEG-E 153 (534)
Q Consensus 81 ~~W~~v~~~~dl~~~~~~~~~l~-g~~lvv~r~~~G~~~a~~d~CpHRga~Ls~G~i~~-----~~l~CpyHGW~Fd~-~ 153 (534)
++|++||.++||++++.+.+.+. |++|+|||+.+|+++|++|+|||++++|++|.+.+ +.|+||||||+||+ |
T Consensus 8 ~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~t 87 (119)
T 4aiv_A 8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDD 87 (119)
T ss_dssp EEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred cceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCCC
Confidence 47999999999999888888875 79999999999999999999999999998876532 36999999999997 8
Q ss_pred CceeecCCCCCCCCCCccCccceEEEEEe-cCeEEEEcC
Q 039074 154 GKCVKIPQLPADAKIPRSACVRTYEVKES-QGVVWVWMS 191 (534)
Q Consensus 154 G~c~~iP~~~~~~~~~~~~~l~~~pv~~~-~G~Vwv~~~ 191 (534)
|+|+..|. .++++|||+++ +|.|||.+.
T Consensus 88 G~~~~~p~----------~~l~~ypv~ve~dG~V~V~~~ 116 (119)
T 4aiv_A 88 GSCLDDPR----------VSVPVYPARVTPEGRIQVARV 116 (119)
T ss_dssp CBBSSCTT----------CBCCEECEEECTTSEEEEEEE
T ss_pred CcCcCCCC----------CccceEEEEEEeCCEEEEecC
Confidence 99998773 35899999865 899999875
No 26
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.84 E-value=2.7e-21 Score=175.13 Aligned_cols=101 Identities=14% Similarity=0.103 Sum_probs=89.0
Q ss_pred cCcEEeee-cCCCCCCCcEEEE-EcCEEEEEEEecCCcE--EEEeCCCCCCCCccccCcccccEEEccCCCeEEecCCce
Q 039074 81 EEWYPLYL-TKDVPDDAPLGLT-VFDQQIVLYKDGNGEL--RCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKC 156 (534)
Q Consensus 81 ~~W~~v~~-~~dl~~~~~~~~~-l~g~~lvv~r~~~G~~--~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~~G~c 156 (534)
..|+.++. ++||++++.+.+. +.|++++++|+.+|++ +|++|+|||||++|++|. .++.|+||||||+||.+|+|
T Consensus 20 g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~ 98 (139)
T 1rfs_A 20 GNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYNNQGRV 98 (139)
T ss_dssp SCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEETTCCE
T ss_pred CCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCC-CCCEEEcCCCCCEECCCCCC
Confidence 36888887 8999988877665 5788888888889999 999999999999999887 56899999999999999999
Q ss_pred eecCCCCCCCCCCccCccceEEEEEecCeEEEEcC
Q 039074 157 VKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMS 191 (534)
Q Consensus 157 ~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~~ 191 (534)
+..|. ..+|++|+|++++|.|||.+.
T Consensus 99 ~~~P~---------~~~L~~~~v~v~~g~V~V~~~ 124 (139)
T 1rfs_A 99 VRGPA---------PLSLALAHCDVDDGKVVFVPW 124 (139)
T ss_dssp EESSC---------CSCCCEEEEEEETTEEEEEEC
T ss_pred ccCCC---------CCCCCEEEEEEECCEEEEEeC
Confidence 99884 246899999999999999974
No 27
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.83 E-value=1.6e-20 Score=168.09 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=87.9
Q ss_pred CcEEeeecCCCCCCCcEEEEEcCEEEEEEEec--------------------------CCcEEEEeCCCCCCCCccccCc
Q 039074 82 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDG--------------------------NGELRCYQDRCPHRLAKLSEGQ 135 (534)
Q Consensus 82 ~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~--------------------------~G~~~a~~d~CpHRga~Ls~G~ 135 (534)
.|..+ .++||++++.+.+.+.|++++|+|.. +|+++|+.|+|||+|++|++|.
T Consensus 5 ~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g~ 83 (129)
T 1rie_A 5 SKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANA 83 (129)
T ss_dssp SSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETC
T ss_pred CceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeeccccc
Confidence 57777 88999999899999999999999863 8999999999999999999999
Q ss_pred ccccEEEccCCCeEEecCCceeecCCCCCCCCCCccCccceEEEEE-ecCeEEE
Q 039074 136 LIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKE-SQGVVWV 188 (534)
Q Consensus 136 i~~~~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~l~~~pv~~-~~G~Vwv 188 (534)
++++.|+||||||+||.+|+|+..|.. ..+..||+++ ++|.|+|
T Consensus 84 ~~~~~i~CP~Hg~~fd~~G~~~~~P~~---------~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 84 GDFGGYYCPCHGSHYDASGRIRKGPAP---------LNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp TTTEEEEETTTTEEEETTCCEEESSCC---------SCCCCCCEEESSSSEEEE
T ss_pred CCCCEEEcCCCCCEEcCCCCEeeCCCC---------CCCCceeEEEEeCCEEEE
Confidence 888999999999999999999998742 3588999999 8999987
No 28
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.81 E-value=7.8e-20 Score=164.41 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=87.1
Q ss_pred CcEEeeecCCCCCCCcEEEEEc--CEEEEEEEec---------CCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEE
Q 039074 82 EWYPLYLTKDVPDDAPLGLTVF--DQQIVLYKDG---------NGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQF 150 (534)
Q Consensus 82 ~W~~v~~~~dl~~~~~~~~~l~--g~~lvv~r~~---------~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~F 150 (534)
-|+.|+.++||++++.+.+++. |++++|+|.. +|+++||.|+|||+|++|++ ..+++.|+||||||+|
T Consensus 7 p~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~-~~~~~~i~CP~Hg~~F 85 (133)
T 1g8k_B 7 PATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSY-DSSSKTFSCPCHFTEF 85 (133)
T ss_dssp CCEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEE-ETTTTEEECTTTCCEE
T ss_pred CceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCCCEEEEEeCcCCCCCCCCCc-ccCCCEEECCCCCCEE
Confidence 4899999999999888899885 8999999985 89999999999999999997 3567899999999999
Q ss_pred ec--CCceeecCCCCCCCCCCccCccceEEEEEe--cCeEEEE
Q 039074 151 EG--EGKCVKIPQLPADAKIPRSACVRTYEVKES--QGVVWVW 189 (534)
Q Consensus 151 d~--~G~c~~iP~~~~~~~~~~~~~l~~~pv~~~--~G~Vwv~ 189 (534)
|. +|+|+..|. ...|+.|+++++ +|.|||.
T Consensus 86 d~~~~G~~~~gP~---------~~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 86 DAEKAGQMICGEA---------TADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp EGGGTTEEEESSC---------SSCCCEEEEEEETTTTEEEEE
T ss_pred CCCCCCCEEcCCC---------CCCCCEEEEEEECCCCEEEEE
Confidence 99 899999874 235899999998 6789985
No 29
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.66 E-value=9.7e-21 Score=169.83 Aligned_cols=102 Identities=10% Similarity=0.046 Sum_probs=83.1
Q ss_pred CcEEe-eecCCCCCCCcEEEE-EcCEEEEEEEecCCc--EEEEeCCCCCCCCccccCcccccEEEccCCCeEEecCCcee
Q 039074 82 EWYPL-YLTKDVPDDAPLGLT-VFDQQIVLYKDGNGE--LRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCV 157 (534)
Q Consensus 82 ~W~~v-~~~~dl~~~~~~~~~-l~g~~lvv~r~~~G~--~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~~G~c~ 157 (534)
.|+.+ ...+|+++++...+. +.|.+++++|+.+|+ ++|++|+||||+++|+.|. +++.|+||||||+||.+|+|+
T Consensus 15 ~~v~~~~~~~~l~~g~~~~v~~l~g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~~ 93 (133)
T 3azc_A 15 NDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNV-SENKFICPCHGSQYDSTGKVV 93 (133)
Confidence 45544 456678777655554 556667777667888 9999999999999999987 678999999999999999999
Q ss_pred ecCCCCCCCCCCccCccceEEEEE-ecCeEEEEcCCC
Q 039074 158 KIPQLPADAKIPRSACVRTYEVKE-SQGVVWVWMSQK 193 (534)
Q Consensus 158 ~iP~~~~~~~~~~~~~l~~~pv~~-~~G~Vwv~~~~~ 193 (534)
.+|.. .+|++|||++ ++|.|||.++.+
T Consensus 94 ~~P~~---------~~L~~ypv~v~~~g~V~V~~~~e 121 (133)
T 3azc_A 94 RGPAP---------LSLALVKATVTEDDKLVFTPWTE 121 (133)
Confidence 98842 3599999999 999999997643
No 30
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.78 E-value=3.4e-19 Score=167.10 Aligned_cols=98 Identities=21% Similarity=0.257 Sum_probs=86.7
Q ss_pred CcEEeeecCCCCCCCcEEEEEcC--EEEEEEEe---------cCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEE
Q 039074 82 EWYPLYLTKDVPDDAPLGLTVFD--QQIVLYKD---------GNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQF 150 (534)
Q Consensus 82 ~W~~v~~~~dl~~~~~~~~~l~g--~~lvv~r~---------~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~F 150 (534)
-+..|+.++||++++++.+++.| ++++|+|. .+|+++|++|+|||+|++|++| .+++.|+||||||+|
T Consensus 50 p~~~v~~~~dL~~g~~~~v~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~~~~~i~CP~Hg~~F 128 (175)
T 4aay_B 50 PANRLANISELTLNEPLDVAYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-ADNKTFNCPGHFSVF 128 (175)
T ss_dssp CCEEEEEGGGCBBTBCEEEESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEE
T ss_pred CcceEEEHHHCCCCCEEEEEECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-CCCCEEEcCCCCCEE
Confidence 46689999999998899999874 58999997 5899999999999999999998 678899999999999
Q ss_pred ecC--CceeecCCCCCCCCCCccCccceEEEEE-ecCeEEEE
Q 039074 151 EGE--GKCVKIPQLPADAKIPRSACVRTYEVKE-SQGVVWVW 189 (534)
Q Consensus 151 d~~--G~c~~iP~~~~~~~~~~~~~l~~~pv~~-~~G~Vwv~ 189 (534)
|.+ |+|+..|. ...|+.|++++ .+|.||+-
T Consensus 129 d~~~tG~~~~gPa---------~~~L~~y~v~vd~dG~V~av 161 (175)
T 4aay_B 129 DPEKGGQQVWGQA---------TQNLPQYVLRVADNGDIFAE 161 (175)
T ss_dssp EGGGTTEEEECSC---------SSCCCBEEEEECTTSEEEEE
T ss_pred CCCCCceEecCCC---------CCCcCEEEEEEEcCCEEEEE
Confidence 985 99999884 24589999999 69999965
No 31
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.70 E-value=2.7e-17 Score=152.93 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=63.3
Q ss_pred cCCcEEEEeCCCCCCCCccccCcccccEEEccCCCeEEecC-Cc-eeecCCCCCCCCCCccCccceEEEEEecCeEEEEc
Q 039074 113 GNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGE-GK-CVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWM 190 (534)
Q Consensus 113 ~~G~~~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~~-G~-c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv~~ 190 (534)
.+| ++||.|+|||+|++|+.|.++++.|.||||||+||.+ |. |+..|. ..+|..|++++++|.|||++
T Consensus 77 ~~g-v~A~~~~CpH~G~~L~~g~~~~~~i~CP~Hgs~Fd~~tG~~~~~gPa---------~~~L~~~~v~v~~g~V~v~~ 146 (165)
T 1nyk_A 77 AEG-VVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPP---------PRPVPQLPVRVEDGVLVAAG 146 (165)
T ss_dssp BTT-EEEEECBCTTTCCBCCEEEGGGTEEECTTTCCEEEGGGTTEEEESSC---------SSCCCEECEEEETTEEEECS
T ss_pred cCC-EEEEEeecCCCCeEcccccCCCCEEECCCCCCEEcCCCCCeeecCCC---------CCCCcEEEEEEECCEEEEEe
Confidence 345 9999999999999999999988999999999999994 85 999874 24689999999999999998
Q ss_pred CCCC
Q 039074 191 SQKT 194 (534)
Q Consensus 191 ~~~~ 194 (534)
+...
T Consensus 147 ~~~~ 150 (165)
T 1nyk_A 147 EFLG 150 (165)
T ss_dssp SCSS
T ss_pred cCcc
Confidence 7543
No 32
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.70 E-value=3.3e-17 Score=156.35 Aligned_cols=94 Identities=16% Similarity=0.160 Sum_probs=84.5
Q ss_pred eeecCCCCCCCcEEEEEcCEEEEEEEec--------------------------CCcEEEEeCCCCCCCCccccCccccc
Q 039074 86 LYLTKDVPDDAPLGLTVFDQQIVLYKDG--------------------------NGELRCYQDRCPHRLAKLSEGQLIDG 139 (534)
Q Consensus 86 v~~~~dl~~~~~~~~~l~g~~lvv~r~~--------------------------~G~~~a~~d~CpHRga~Ls~G~i~~~ 139 (534)
.+.++||++++.+.+...|++++|+|.. +|+|+|+.|+|||+|++|+.|.++.+
T Consensus 75 ~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~~ 154 (196)
T 1pp9_E 75 EIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFG 154 (196)
T ss_dssp EEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTTS
T ss_pred EEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCCC
Confidence 4789999999889999999999999852 78999999999999999999988878
Q ss_pred EEEccCCCeEEecCCceeecCCCCCCCCCCccCccceEEEEE-ecCeEEE
Q 039074 140 RLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKE-SQGVVWV 188 (534)
Q Consensus 140 ~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~l~~~pv~~-~~G~Vwv 188 (534)
.|.||||||+||.+|+++..|.. ..|..||+++ ++|.|+|
T Consensus 155 ~~~CP~HGs~FD~~G~v~~gPa~---------~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 155 GYYCPCHGSHYDASGRIRKGPAP---------LNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp SEEETTTTEEECTTCCEEESSCC---------SCCCCCCEEEETTTEEEE
T ss_pred EEEeCCCCCEECCCCCCccCCCC---------CCCcceeEEEEECCEEEE
Confidence 99999999999999999998742 3588899998 8999987
No 33
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.70 E-value=5e-17 Score=154.21 Aligned_cols=96 Identities=17% Similarity=0.149 Sum_probs=82.5
Q ss_pred cEEeeecCCCCCCCcEEEEEcCEEEEEEEe----------------------------------------cCCcEEEEeC
Q 039074 83 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKD----------------------------------------GNGELRCYQD 122 (534)
Q Consensus 83 W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~----------------------------------------~~G~~~a~~d 122 (534)
|..| .++||++++.+.+...|++|+|+|. .+|+++|+.|
T Consensus 49 ~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~~ 127 (187)
T 2qjy_C 49 SIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWG 127 (187)
T ss_dssp CEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEEC
T ss_pred cEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEeC
Confidence 6655 7899999889999999999999992 2789999999
Q ss_pred CCCCCCCccccC-cccccEEEccCCCeEEecCCceeecCCCCCCCCCCccCccceEEEEEe-cCeEEE
Q 039074 123 RCPHRLAKLSEG-QLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKES-QGVVWV 188 (534)
Q Consensus 123 ~CpHRga~Ls~G-~i~~~~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~l~~~pv~~~-~G~Vwv 188 (534)
+|||+|++|++| ..+.+.|.||||||+||.+|+|+..|.. ..|..||+++. +|.|+|
T Consensus 128 ~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~---------~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 128 VCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAP---------ENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp CCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC---------SCCCBCSEEEEETTEEEE
T ss_pred ccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCC---------CCCceEEEEEEeCCEEEE
Confidence 999999999984 3344899999999999999999998742 35889999986 688887
No 34
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.69 E-value=6.7e-17 Score=153.02 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=82.7
Q ss_pred cCcEEeeecCCCCCCCcEEEEEcCEEEEEEEec--------------------------CCcEEEEeCCCCCCCCc-ccc
Q 039074 81 EEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDG--------------------------NGELRCYQDRCPHRLAK-LSE 133 (534)
Q Consensus 81 ~~W~~v~~~~dl~~~~~~~~~l~g~~lvv~r~~--------------------------~G~~~a~~d~CpHRga~-Ls~ 133 (534)
..|+.| .++||++++.+.+.+.|++++|+|.. +|+|+|+.|+|||+|+. +.+
T Consensus 61 ~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~~ 139 (185)
T 3cx5_E 61 MAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGE 139 (185)
T ss_dssp CCCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEEE
T ss_pred cCcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceeccC
Confidence 469999 69999999899999999999999973 68999999999999995 555
Q ss_pred CcccccEEEccCCCeEEecCCceeecCCCCCCCCCCccCccceEEEEEecCeEEE
Q 039074 134 GQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWV 188 (534)
Q Consensus 134 G~i~~~~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~l~~~pv~~~~G~Vwv 188 (534)
+ .+.+.+.||||||+||.+|+|+..|.. ..|..+|+++++|.|||
T Consensus 140 ~-~~~~~~~CPcHGs~FD~~G~v~~gPa~---------~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 140 A-GDFGGWFCPCHGSHYDISGRIRKGPAP---------LNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp E-TTTTEEEETTTTEEECTTCCEEESSCC---------SCCCCCCEEEETTEEEE
T ss_pred C-CCCCEEEcCCCCCEECCCCCEecCCCC---------CCcceEEEEEECCEEEE
Confidence 4 356899999999999999999998842 24666777778999987
No 35
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.69 E-value=6.4e-17 Score=146.60 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=81.3
Q ss_pred eecCCCCCCCcEEEEEcCEEEEEEEe----------------------------------------cCCcEEEEeCCCCC
Q 039074 87 YLTKDVPDDAPLGLTVFDQQIVLYKD----------------------------------------GNGELRCYQDRCPH 126 (534)
Q Consensus 87 ~~~~dl~~~~~~~~~l~g~~lvv~r~----------------------------------------~~G~~~a~~d~CpH 126 (534)
..+++|++++.+.+...|+++.|.|. .+|+++|+.|+|||
T Consensus 6 vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H 85 (141)
T 2nwf_A 6 VDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTH 85 (141)
T ss_dssp EECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTT
T ss_pred EecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCC
Confidence 35788988888999999999999874 17899999999999
Q ss_pred CCCcccc-CcccccEEEccCCCeEEecCCceeecCCCCCCCCCCccCccceEEEEE-ecCeEEE
Q 039074 127 RLAKLSE-GQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKE-SQGVVWV 188 (534)
Q Consensus 127 Rga~Ls~-G~i~~~~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~l~~~pv~~-~~G~Vwv 188 (534)
+|++|+. +..+++.|.||||||+||.+|+|+..|.. ..|..||+++ .+|.|+|
T Consensus 86 ~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~---------~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 86 LGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAP---------ENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp TCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC---------SCCCBCSEEESSSSEEEE
T ss_pred CCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCC---------CCCCceeEEEEECCEEEE
Confidence 9999998 77677899999999999999999998742 3588999999 7999987
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.64 E-value=1.8e-17 Score=156.31 Aligned_cols=93 Identities=9% Similarity=0.159 Sum_probs=79.9
Q ss_pred cCCCCCCCcEEEE-EcCEEEEEEEecCCcE--EEEeCCCCCCCCccccCcccccEEEccCCCeEEecCCceeecCCCCCC
Q 039074 89 TKDVPDDAPLGLT-VFDQQIVLYKDGNGEL--RCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPAD 165 (534)
Q Consensus 89 ~~dl~~~~~~~~~-l~g~~lvv~r~~~G~~--~a~~d~CpHRga~Ls~G~i~~~~l~CpyHGW~Fd~~G~c~~iP~~~~~ 165 (534)
.+|++++....+. +.|++++++|+.+|++ +|+.|+|||+|++|+.|. +++.|.||||||+||.+|+|+..|.
T Consensus 70 ~~~l~~g~~~~~~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~-~~~~~~CP~Hgs~Fd~~G~~~~gPa---- 144 (179)
T 1vf5_D 70 LESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNA-AENKFKCPCHGSQYDETGRVIRGPA---- 144 (179)
T ss_dssp HHCCCTTCCCEESCSSSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCS-SSSSEECTTTCCEECSSSCCCSSSC----
T ss_pred ccccCCCceEEEeccCCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccC-CCCEEECCCCCCEECCCCcEecCCC----
Confidence 4678877666665 6788999999889987 999999999999999887 4678999999999999999998874
Q ss_pred CCCCccCccceEEEEEecCeEEEEcC
Q 039074 166 AKIPRSACVRTYEVKESQGVVWVWMS 191 (534)
Q Consensus 166 ~~~~~~~~l~~~pv~~~~G~Vwv~~~ 191 (534)
...|..||+++++|.|||.+-
T Consensus 145 -----~~~L~~~~v~v~~g~v~v~~~ 165 (179)
T 1vf5_D 145 -----PLSLALCHATVQDDNIVLTPW 165 (179)
T ss_dssp -----CSCCBCCCCCCSSSSCCCCCC
T ss_pred -----CCCCCeEEEEEECCEEEEEee
Confidence 236899999999999998763
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.55 E-value=1.5e-15 Score=145.66 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=72.1
Q ss_pred EEEEEcCEEEEEEEec------------CCcEEEEeCCCCCCCCccccCcc-----------cccEEEccCCCeEEecC-
Q 039074 98 LGLTVFDQQIVLYKDG------------NGELRCYQDRCPHRLAKLSEGQL-----------IDGRLECLYHGWQFEGE- 153 (534)
Q Consensus 98 ~~~~l~g~~lvv~r~~------------~G~~~a~~d~CpHRga~Ls~G~i-----------~~~~l~CpyHGW~Fd~~- 153 (534)
..+++.+.+++++|+. +|+++|+.|+|||+|++|++|.+ +++.|.||||||+||.+
T Consensus 56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~t 135 (204)
T 1jm1_A 56 QITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKD 135 (204)
T ss_dssp CCCEEECTTTTSSCTTGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGG
T ss_pred ceEeeCCceEEEEecCccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCC
Confidence 4577888888888876 79999999999999999999864 56899999999999996
Q ss_pred -CceeecCCCCCCCCCCccCccceEEEEEe--cCeEEEEcC
Q 039074 154 -GKCVKIPQLPADAKIPRSACVRTYEVKES--QGVVWVWMS 191 (534)
Q Consensus 154 -G~c~~iP~~~~~~~~~~~~~l~~~pv~~~--~G~Vwv~~~ 191 (534)
|+|+..|.. ..|..|++.++ +|.|||...
T Consensus 136 GG~v~~gPa~---------~~L~~~~v~v~~~~g~v~v~g~ 167 (204)
T 1jm1_A 136 GGVVVSGPAP---------RPLPIVILDYDSSTGDIYAVGT 167 (204)
T ss_dssp TSEEEESSCC---------SCCCBEEEEECTTTCEEEEEEE
T ss_pred CCeEecCCCC---------CCCCeEeeEEEecCCEEEEEeC
Confidence 699988742 34788888877 999999763
No 38
>3hug_B Probable conserved membrane protein; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=51.85 E-value=5.4 Score=33.67 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=27.2
Q ss_pred hhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 039074 450 NLANRYFRHVIHCKGCSSVIKAFSTWKNSLSVV 482 (534)
Q Consensus 450 ~lldRy~~Ht~~C~sC~~Al~~~~~~~~~l~~~ 482 (534)
.--.++++|-..|+.|++.+..++.+...|..+
T Consensus 42 ~e~~~vEaHLa~Cp~CR~ev~eL~~~~a~L~~l 74 (108)
T 3hug_B 42 ADRREFEAHLAGCPECRGAVTELCGVPALLSQL 74 (108)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTHHHHHTTS
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcC
Confidence 345789999999999999999998877666543
No 39
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=42.93 E-value=9.6 Score=32.39 Aligned_cols=18 Identities=11% Similarity=0.340 Sum_probs=15.8
Q ss_pred hccccchhHHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFSTW 475 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~~ 475 (534)
|+..|+.|++|++.++.-
T Consensus 9 ~~~~C~~c~ka~~~L~~~ 26 (120)
T 3fz4_A 9 EYPKCSTCRRAKAELDDL 26 (120)
T ss_dssp ECSSCHHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHHHHc
Confidence 678999999999999863
No 40
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=41.01 E-value=11 Score=31.98 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=15.4
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|...|+.|++|++.++.
T Consensus 10 ~~p~C~~c~ka~~~L~~ 26 (119)
T 3f0i_A 10 HNPKCSKSRETLALLEN 26 (119)
T ss_dssp CCTTCHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHH
Confidence 67899999999999986
No 41
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=39.05 E-value=12 Score=31.79 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=15.4
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|+..|+.|++|++.++.
T Consensus 10 ~~p~C~~c~ka~~~L~~ 26 (120)
T 3gkx_A 10 QYPACSTCQKAKKWLIE 26 (120)
T ss_dssp ECTTCHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHH
Confidence 67899999999999986
No 42
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=36.06 E-value=14 Score=31.46 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=15.3
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|...|+.|++|++.++.
T Consensus 11 ~~p~C~~c~ka~~~L~~ 27 (121)
T 3rdw_A 11 HNPRCSKSRETLALVEQ 27 (121)
T ss_dssp CCTTCHHHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 67899999999999976
No 43
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=32.81 E-value=17 Score=30.65 Aligned_cols=17 Identities=12% Similarity=0.278 Sum_probs=15.1
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|...|+.|++|++.++.
T Consensus 6 ~~~~C~~c~ka~~~L~~ 22 (120)
T 3l78_A 6 LSPSCTSCRKARAWLNR 22 (120)
T ss_dssp ECSSCHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 56789999999999976
No 44
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=32.66 E-value=21 Score=32.97 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=24.5
Q ss_pred hhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 039074 451 LANRYFRHVIHCKGCSSVIKAFSTWKNSLS 480 (534)
Q Consensus 451 lldRy~~Ht~~C~sC~~Al~~~~~~~~~l~ 480 (534)
.--..++|...|+.|++.++.++.+.-.+.
T Consensus 24 ~~~~ve~HL~~C~~Cr~~v~~l~~~~~~l~ 53 (195)
T 2q1z_B 24 FSLVVATHLSLCDECRARAGALDAVGGSLM 53 (195)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHCHHHHHHHHHHHHHHHHHh
Confidence 446789999999999999999888764443
No 45
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=32.51 E-value=18 Score=31.68 Aligned_cols=17 Identities=6% Similarity=0.075 Sum_probs=15.2
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|...|+.|++|++.++.
T Consensus 8 ~~p~C~~crkak~~L~~ 24 (141)
T 1s3c_A 8 HNPASGTSRNTLEMIRN 24 (141)
T ss_dssp CCTTCHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHH
Confidence 57899999999999976
No 46
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=32.50 E-value=18 Score=30.18 Aligned_cols=17 Identities=6% Similarity=0.112 Sum_probs=15.1
Q ss_pred hccccchhHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFST 474 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~ 474 (534)
|...|+.|++|.+.++.
T Consensus 6 ~~~~C~~C~kak~~L~~ 22 (114)
T 1rw1_A 6 GIKACDTMKKARTWLDE 22 (114)
T ss_dssp ECSSCHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHH
Confidence 56799999999999976
No 47
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=30.46 E-value=20 Score=30.14 Aligned_cols=18 Identities=6% Similarity=0.084 Sum_probs=15.7
Q ss_pred hccccchhHHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFSTW 475 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~~ 475 (534)
|+..|+.|++|++.++..
T Consensus 11 ~~~~C~~C~ka~~~L~~~ 28 (120)
T 2kok_A 11 GIKNCDTMKKARIWLEDH 28 (120)
T ss_dssp ECSSCHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHHc
Confidence 567999999999999874
No 48
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=25.64 E-value=1.3e+02 Score=23.34 Aligned_cols=52 Identities=10% Similarity=0.007 Sum_probs=29.6
Q ss_pred cchhHHHHHHHHHHHHHHHH---HHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHHH
Q 039074 462 CKGCSSVIKAFSTWKNSLSV---VAAALTVLAILA-SGRQWKAFCLASASLCLAGVY 514 (534)
Q Consensus 462 C~sC~~Al~~~~~~~~~l~~---~~~~~~~~a~~~-~~~~~~~~~~~~a~~~~a~~~ 514 (534)
+-+=+.+-+.+++.|....= .++++++++.+. ++..+|++++++++ ++|=+|
T Consensus 19 Wl~~~~~~~~l~rvE~WilrNp~~al~~~~~~w~lG~~~~Qrvi~iil~l-lvaPaY 74 (75)
T 3j27_B 19 WMSSEGAWKHAQRIETWILRHPGFTIMAAILAYTIGTTHFQRALIFILLT-AVAPSM 74 (75)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHSSCSSHHHHHHHHHHH-HHCC--
T ss_pred CcCcchHHHHHHHHHHHHHHChHHHHHHHHHHHHHcCChHHHHHHHHHHH-Hhcccc
Confidence 55567788888888877654 455555556554 45555665544443 443333
No 49
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=23.29 E-value=1.3e+02 Score=23.49 Aligned_cols=50 Identities=8% Similarity=0.006 Sum_probs=26.2
Q ss_pred chhHHHHHHHHHHHHHHHH---HHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHH
Q 039074 463 KGCSSVIKAFSTWKNSLSV---VAAALTVLAILA-SGRQWKAFCLASASLCLAGV 513 (534)
Q Consensus 463 ~sC~~Al~~~~~~~~~l~~---~~~~~~~~a~~~-~~~~~~~~~~~~a~~~~a~~ 513 (534)
-+=+.+-+.+++.|....- .++++++++.+. ++..+|++++++++ ++|=+
T Consensus 20 l~~~~~~~~l~kvE~WilrNp~~al~a~~~~w~lG~~~~Qrvi~~il~l-lvaPa 73 (75)
T 1p58_D 20 MSSEGAWKHAQRIETWILRHPGFTIMAAILAYTIGTTHFQRVLIFILLT-AIAPS 73 (75)
T ss_pred cCcchHHHHHHHHHHHHHHChHHHHHHHHHHHHHcCChHHHHHHHHHHH-Hhccc
Confidence 3445666777777665543 444444555544 45555655544443 44333
No 50
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=20.78 E-value=39 Score=28.85 Aligned_cols=18 Identities=11% Similarity=0.267 Sum_probs=15.4
Q ss_pred hccccchhHHHHHHHHHH
Q 039074 458 HVIHCKGCSSVIKAFSTW 475 (534)
Q Consensus 458 Ht~~C~sC~~Al~~~~~~ 475 (534)
|...|+.|++|.+.++..
T Consensus 7 ~~~~C~~C~ka~~~L~~~ 24 (132)
T 1z3e_A 7 TSPSCTSCRKARAWLEEH 24 (132)
T ss_dssp ECTTCHHHHHHHHHHHHT
T ss_pred eCCCChHHHHHHHHHHHc
Confidence 567999999999998764
No 51
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=20.47 E-value=2.4e+02 Score=27.13 Aligned_cols=28 Identities=7% Similarity=-0.022 Sum_probs=21.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039074 495 GRQWKAFCLASASLCLAGVYACSTAIAM 522 (534)
Q Consensus 495 ~~~~~~~~~~~a~~~~a~~~~~~~~~~~ 522 (534)
+......+.+++++++|+.+|++..+++
T Consensus 89 g~~~~~l~a~~g~~g~aig~a~q~~l~n 116 (285)
T 3udc_A 89 NIDMTSLLAVAGIGSLAIGFGAQNLVKD 116 (285)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667788888888899999987775544
Done!