Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>039077
MKIASEQMASVAHVMPSATSCCTVRKQGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGV
KHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVID
SLPKKVLFLFASSCTLNAYVVLLETTCLI

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  039077
        (149 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2126734 - symbol:FAD6 "fatty acid desaturase 6...   245  2.8e-20   1


>TAIR|locus:2126734 [details] [associations]
            symbol:FAD6 "fatty acid desaturase 6" species:3702
            "Arabidopsis thaliana" [GO:0006629 "lipid metabolic process"
            evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;NAS;IDA]
            [GO:0010205 "photoinhibition" evidence=IMP] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0006633 "fatty acid
            biosynthetic process" evidence=TAS] [GO:0000096 "sulfur amino acid
            metabolic process" evidence=RCA] [GO:0006546 "glycine catabolic
            process" evidence=RCA] [GO:0006636 "unsaturated fatty acid
            biosynthetic process" evidence=RCA] [GO:0006655
            "phosphatidylglycerol biosynthetic process" evidence=RCA]
            [GO:0006733 "oxidoreduction coenzyme metabolic process"
            evidence=RCA] [GO:0006766 "vitamin metabolic process" evidence=RCA]
            [GO:0008652 "cellular amino acid biosynthetic process"
            evidence=RCA] [GO:0009072 "aromatic amino acid family metabolic
            process" evidence=RCA] [GO:0009106 "lipoate metabolic process"
            evidence=RCA] [GO:0009108 "coenzyme biosynthetic process"
            evidence=RCA] [GO:0009117 "nucleotide metabolic process"
            evidence=RCA] [GO:0009416 "response to light stimulus"
            evidence=RCA] [GO:0009695 "jasmonic acid biosynthetic process"
            evidence=RCA] [GO:0015994 "chlorophyll metabolic process"
            evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
            evidence=RCA] [GO:0016117 "carotenoid biosynthetic process"
            evidence=RCA] [GO:0019216 "regulation of lipid metabolic process"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0019748
            "secondary metabolic process" evidence=RCA] [GO:0031408 "oxylipin
            biosynthetic process" evidence=RCA] [GO:0035304 "regulation of
            protein dephosphorylation" evidence=RCA] [GO:0044272 "sulfur
            compound biosynthetic process" evidence=RCA] [GO:0045485 "omega-6
            fatty acid desaturase activity" evidence=IGI] InterPro:IPR005804
            Pfam:PF00487 UniPathway:UPA00658 GO:GO:0016021 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0016491 GO:GO:0009941 GO:GO:0006633
            GO:GO:0009706 GO:GO:0006636 GO:GO:0010205 EMBL:AL022198
            EMBL:AL161578 eggNOG:COG3239 EMBL:AY045621 EMBL:AY058078
            EMBL:AY079039 EMBL:AY058852 EMBL:AY088002 EMBL:U09503
            IPI:IPI00526736 PIR:D85362 RefSeq:NP_194824.1 UniGene:At.1931
            IntAct:P46312 STRING:P46312 PaxDb:P46312 PRIDE:P46312
            EnsemblPlants:AT4G30950.1 GeneID:829220 KEGG:ath:AT4G30950
            TAIR:At4g30950 HOGENOM:HOG000030743 InParanoid:P46312 KO:K10255
            OMA:NVHVPHH PhylomeDB:P46312 ProtClustDB:PLN02598
            BioCyc:MetaCyc:AT4G30950-MONOMER Genevestigator:P46312
            GermOnline:AT4G30950 Uniprot:P46312
        Length = 448

 Score = 245 (91.3 bits), Expect = 2.8e-20, P = 2.8e-20
 Identities = 57/105 (54%), Positives = 71/105 (67%)

Query:    28 GPHQRPTGSQKIGCFS---SPGLCQLKWESLLVKGVKHK--RCSIP-SRGTRFIQAVAVP 81
             GP Q      K+   S   SPG+  +K   LL+KG  H+  RC  P  R    I+AVA P
Sbjct:    14 GPQQCLPRVPKLAASSARVSPGVYAVKPIDLLLKGRTHRSRRCVAPVKRRIGCIKAVAAP 73

Query:    82 VAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKV 126
             VAPPS DSA+ R+Q+AESYGFRQIGE LPENVT+KD++D+LPK+V
Sbjct:    74 VAPPSADSAEDREQLAESYGFRQIGEDLPENVTLKDIMDTLPKEV 118


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.132   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      149       149   0.00078  104 3  11 22  0.44    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  588 (63 KB)
  Total size of DFA:  145 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.97u 0.12s 15.09t   Elapsed:  00:00:00
  Total cpu time:  14.97u 0.12s 15.09t   Elapsed:  00:00:00
  Start:  Fri May 10 07:54:34 2013   End:  Fri May 10 07:54:34 2013

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