BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039077
(149 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359494889|ref|XP_003634863.1| PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Vitis
vinifera]
gi|296090576|emb|CBI40939.3| unnamed protein product [Vitis vinifera]
Length = 441
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 79/100 (79%)
Query: 28 GPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSE 87
GPHQR S ++G SPG+ LK ES+L K +KH++CSI ++ ++ +QAVA+PVAP
Sbjct: 14 GPHQRSIPSYRVGPHCSPGMLCLKLESILGKEIKHQKCSISTKRSKIVQAVAIPVAPSPI 73
Query: 88 DSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
DSA+ RKQ+AESYGF QIGEPLPENVT++DVID++PKKV
Sbjct: 74 DSAEYRKQLAESYGFEQIGEPLPENVTLRDVIDTIPKKVF 113
>gi|118487416|gb|ABK95536.1| unknown [Populus trichocarpa]
Length = 444
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/103 (62%), Positives = 76/103 (73%), Gaps = 4/103 (3%)
Query: 28 GPHQRPTGSQKIGCFSSP---GLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAP 84
GPHQR SQKI S+P G L W+ LLVKG HK+ IP R TR +QAVA PVAP
Sbjct: 15 GPHQR-IRSQKIATHSAPCMTGNWHLTWDRLLVKGENHKKWVIPMRRTRTVQAVAAPVAP 73
Query: 85 PSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
S DSA+ RKQ+AESYGFR+IGEPLP+N+T+K V+D+LPKKV
Sbjct: 74 SSADSAEYRKQLAESYGFRKIGEPLPDNITLKGVMDTLPKKVF 116
>gi|255584459|ref|XP_002532960.1| Omega-6 fatty acid desaturase, chloroplast precursor, putative
[Ricinus communis]
gi|223527270|gb|EEF29426.1| Omega-6 fatty acid desaturase, chloroplast precursor, putative
[Ricinus communis]
Length = 440
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 71/103 (68%), Gaps = 3/103 (2%)
Query: 28 GPHQRPTGSQKI---GCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAP 84
GP +P SQKI +PG+ L W+ LL+KG K K C + T+ IQAVA PVA
Sbjct: 14 GPQLKPIRSQKIVTHNSLGTPGIHHLTWDRLLLKGEKQKSCLFYLKKTKPIQAVATPVAR 73
Query: 85 PSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
S DSA+ RKQ+AESYGFRQIGEPLP NVT+K +ID+LPKKV
Sbjct: 74 SSADSAEYRKQLAESYGFRQIGEPLPGNVTLKYIIDTLPKKVF 116
>gi|268527769|gb|ACZ06070.1| chloroplast omega-6 fatty acid desaturase [Arachis hypogaea]
Length = 442
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
Query: 27 QGPHQRPTGSQK-IGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPP 85
+G HQ+P S++ I SP +C LK L+ KG +H+ +P + IQAVAVP+ P
Sbjct: 13 KGSHQKPLQSKRAIVAQYSPRVCNLKECGLIQKGFRHRLNFVPRKKVTVIQAVAVPLEPF 72
Query: 86 SEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
+SA+ RKQ+AESYGFRQIGEPLP+++T+KDVIDSLPKKV
Sbjct: 73 PVESAEYRKQLAESYGFRQIGEPLPDDITLKDVIDSLPKKVF 114
>gi|449457899|ref|XP_004146685.1| PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like
[Cucumis sativus]
Length = 443
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 70/103 (67%), Gaps = 2/103 (1%)
Query: 27 QGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPS 86
GPH +QKI SPG+ Q+K E L K +K + +P + ++A+AVP APPS
Sbjct: 13 NGPHHNFARTQKIASHCSPGILQVKGEILFQKKIKRQNYLLPVKRAAILRAIAVPAAPPS 72
Query: 87 E--DSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
DSA+ RKQ++ESYGF QIGEPLP+NV +KDV++SLPK+V
Sbjct: 73 SSADSAEYRKQLSESYGFEQIGEPLPDNVRLKDVVESLPKEVF 115
>gi|449526521|ref|XP_004170262.1| PREDICTED: LOW QUALITY PROTEIN: omega-6 fatty acid desaturase,
chloroplastic-like, partial [Cucumis sativus]
Length = 390
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 70/103 (67%), Gaps = 2/103 (1%)
Query: 27 QGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPS 86
GPH +QKI SPG+ Q+K E L K +K + +P + ++A+AVP APPS
Sbjct: 13 NGPHHNFARTQKIASHCSPGILQVKGEILFQKKIKRQNYLLPVKRAAILRAIAVPAAPPS 72
Query: 87 E--DSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
DSA+ RKQ++ESYGF QIGEPLP+NV +KDV++SLPK+V
Sbjct: 73 SSADSAEYRKQLSESYGFEQIGEPLPDNVRLKDVVESLPKEVF 115
>gi|156900672|gb|ABU96742.1| chloroplast omega-6 fatty acid desaturase [Jatropha curcas]
Length = 440
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
Query: 28 GPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSE 87
P RP + SPG+ +L W+ L+ KG K K+ + + + +QAVA PVAP S
Sbjct: 14 NPQPRPIRCRSTLTHCSPGIHRLTWDRLIKKGEKQKQFLLHVKRIKPVQAVAFPVAP-SS 72
Query: 88 DSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
DSA RKQ+AESYGFRQIGEPLPEN+T++++ID+LPKKV
Sbjct: 73 DSAQYRKQLAESYGFRQIGEPLPENITLREIIDTLPKKVF 112
>gi|15235766|ref|NP_194824.1| omega-6 fatty acid desaturase [Arabidopsis thaliana]
gi|13432148|sp|P46312.2|FAD6C_ARATH RecName: Full=Omega-6 fatty acid desaturase, chloroplastic; Flags:
Precursor
gi|2980771|emb|CAA18198.1| chloroplast omega-6 fatty acid desaturase (fad6) [Arabidopsis
thaliana]
gi|7269997|emb|CAB79813.1| chloroplast omega-6 fatty acid desaturase (fad6) [Arabidopsis
thaliana]
gi|15010640|gb|AAK73979.1| AT4g30950/F6I18_140 [Arabidopsis thaliana]
gi|16604360|gb|AAL24186.1| AT4g30950/F6I18_140 [Arabidopsis thaliana]
gi|16604468|gb|AAL24240.1| AT4g30950/F6I18_140 [Arabidopsis thaliana]
gi|18958032|gb|AAL79589.1| AT4g30950/F6I18_140 [Arabidopsis thaliana]
gi|21593581|gb|AAM65548.1| chloroplast omega-6 fatty acid desaturase (fad6) [Arabidopsis
thaliana]
gi|332660434|gb|AEE85834.1| omega-6 fatty acid desaturase [Arabidopsis thaliana]
Length = 448
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 57/106 (53%), Positives = 71/106 (66%), Gaps = 6/106 (5%)
Query: 28 GPHQRPTGSQKIGCFS---SPGLCQLKWESLLVKGVKHK--RCSIP-SRGTRFIQAVAVP 81
GP Q K+ S SPG+ +K LL+KG H+ RC P R I+AVA P
Sbjct: 14 GPQQCLPRVPKLAASSARVSPGVYAVKPIDLLLKGRTHRSRRCVAPVKRRIGCIKAVAAP 73
Query: 82 VAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
VAPPS DSA+ R+Q+AESYGFRQIGE LPENVT+KD++D+LPK+V
Sbjct: 74 VAPPSADSAEDREQLAESYGFRQIGEDLPENVTLKDIMDTLPKEVF 119
>gi|493068|gb|AAA92800.1| chloroplast omega-6 fatty acid desaturase [Arabidopsis thaliana]
Length = 418
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 3/87 (3%)
Query: 44 SPGLCQLKWESLLVKGVKHK--RCSIP-SRGTRFIQAVAVPVAPPSEDSADCRKQIAESY 100
SPG+ +K LL+KG H+ RC P R I+AVA PVAPPS DSA+ R+Q+AESY
Sbjct: 33 SPGVYAVKPIDLLLKGRTHRSRRCVAPVKRRIGCIKAVAAPVAPPSADSAEDREQLAESY 92
Query: 101 GFRQIGEPLPENVTMKDVIDSLPKKVL 127
GFRQIGE LPENVT+KD++D+LPK+V
Sbjct: 93 GFRQIGEDLPENVTLKDIMDTLPKEVF 119
>gi|339779644|gb|AEK06379.1| plastid oleate desaturase FAD6 [Carthamus tinctorius]
Length = 397
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 27 QGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPV-APP 85
+GP Q+P + G G LKW+ L KH+ +P R T+ +QAV V AP
Sbjct: 13 KGPQQKPLHGYRFGSLYPAGTSFLKWDILPKCRTKHQTYVVPLRRTKIVQAVTSSVTAPL 72
Query: 86 SEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
DSA+ RK++ ESYGFRQIGEPLP+N+T+K++ID+LPK V
Sbjct: 73 PSDSAEERKELCESYGFRQIGEPLPDNITLKNIIDTLPKTVF 114
>gi|114384177|gb|ABI73993.1| omega-6 fatty acid desaturase [Descurainia sophia]
gi|154813796|gb|ABS86963.1| chloroplast delta-12 fatty acid desaturase [Descurainia sophia]
Length = 447
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 67/87 (77%), Gaps = 3/87 (3%)
Query: 44 SPGLCQLKWESLLVKGVKHKR--CSIP-SRGTRFIQAVAVPVAPPSEDSADCRKQIAESY 100
SPG+ ++ +LL+KG ++R C P R I+AVAVPVAPPS DSA+ R+Q+AESY
Sbjct: 32 SPGVYAVRPINLLLKGSTYRRSRCVAPVKRRIGCIKAVAVPVAPPSADSAEGREQLAESY 91
Query: 101 GFRQIGEPLPENVTMKDVIDSLPKKVL 127
GFRQIGE LP+NVT+KD++D+LPK+V
Sbjct: 92 GFRQIGEDLPDNVTLKDIMDTLPKEVF 118
>gi|388493026|gb|AFK34579.1| unknown [Medicago truncatula]
Length = 446
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 66/101 (65%), Gaps = 4/101 (3%)
Query: 31 QRPTGSQK--IGCFSSPGLCQLKWESLLVKGVKHK--RCSIPSRGTRFIQAVAVPVAPPS 86
QRP + + I SPGL LK + L+ KG +H+ + P I+AVA+PV P
Sbjct: 18 QRPILNLRTNISAPYSPGLFNLKGDGLIHKGFRHQSQKHLTPRNKVTVIRAVAIPVEPAP 77
Query: 87 EDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
+SA+ RKQ+AE YGF QIGEPLP+NVT+KDVI SLPKKV
Sbjct: 78 VESAEYRKQLAERYGFEQIGEPLPDNVTLKDVITSLPKKVF 118
>gi|357480091|ref|XP_003610331.1| Chloroplast omega-6 fatty acid desaturase [Medicago truncatula]
gi|355511386|gb|AES92528.1| Chloroplast omega-6 fatty acid desaturase [Medicago truncatula]
Length = 446
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 66/101 (65%), Gaps = 4/101 (3%)
Query: 31 QRPTGSQK--IGCFSSPGLCQLKWESLLVKGVKHK--RCSIPSRGTRFIQAVAVPVAPPS 86
QRP + + I SPGL LK + L+ KG +H+ + P I+AVA+PV P
Sbjct: 18 QRPILNLRTNISAPYSPGLFNLKGDGLIHKGFRHQSQKHLTPRNKVTVIRAVAIPVEPAP 77
Query: 87 EDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
+SA+ RKQ+AE YGF QIGEPLP+NVT+KDVI SLPKKV
Sbjct: 78 VESAEYRKQLAERYGFEQIGEPLPDNVTLKDVITSLPKKVF 118
>gi|224088264|ref|XP_002308396.1| predicted protein [Populus trichocarpa]
gi|222854372|gb|EEE91919.1| predicted protein [Populus trichocarpa]
Length = 387
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/58 (72%), Positives = 51/58 (87%)
Query: 70 RGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
R TR +QAVA PVAP S DSA+ RKQ+AESYGFR+IGEPLP+N+T+KDV+D+LPKKV
Sbjct: 2 RRTRTVQAVAAPVAPSSADSAEYRKQLAESYGFRKIGEPLPDNITLKDVMDTLPKKVF 59
>gi|297798870|ref|XP_002867319.1| omega-6 fatty acid desaturase [Arabidopsis lyrata subsp. lyrata]
gi|297313155|gb|EFH43578.1| omega-6 fatty acid desaturase [Arabidopsis lyrata subsp. lyrata]
Length = 447
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 66/87 (75%), Gaps = 3/87 (3%)
Query: 44 SPGLCQLKWESLLVKGV--KHKRCSIP-SRGTRFIQAVAVPVAPPSEDSADCRKQIAESY 100
SPG+ ++ LL+KG + +RC P R I+AVAVPVAPPS DSA+ R+Q+AESY
Sbjct: 32 SPGIYAVRPIDLLLKGSTRRSRRCVAPVKRRIGCIKAVAVPVAPPSADSAEDREQLAESY 91
Query: 101 GFRQIGEPLPENVTMKDVIDSLPKKVL 127
GF+QIGE LP+NVT+KD++D+LPK+V
Sbjct: 92 GFKQIGENLPDNVTLKDIMDTLPKEVF 118
>gi|356564907|ref|XP_003550688.1| PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like
[Glycine max]
Length = 205
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 62/97 (63%)
Query: 31 QRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSA 90
+ P + I SPG+ L L+ KG + +R + I+AVA+PV P +SA
Sbjct: 12 KNPVLPRHIAAQYSPGIFSLNSNGLIQKGFRRQRNFVTRNKVTVIRAVAIPVQPAPVESA 71
Query: 91 DCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
+ RKQ+AE YGFRQIGE LP++VT+KDVI+SLPK+V
Sbjct: 72 EYRKQLAEDYGFRQIGESLPDDVTLKDVINSLPKEVF 108
>gi|351721531|ref|NP_001238236.1| omega-6 fatty acid desaturase, chloroplastic [Glycine max]
gi|1345979|sp|P48628.1|FAD6C_SOYBN RecName: Full=Omega-6 fatty acid desaturase, chloroplastic; Flags:
Precursor
gi|459962|gb|AAA50158.1| plastid omega-6 desaturase [Glycine max]
Length = 424
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 63/101 (62%)
Query: 27 QGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPS 86
+G +Q+P + I SPG+ L L+ K + +R + I AVA+PV P
Sbjct: 13 KGSYQKPVLRRDIAARYSPGIFSLNSNGLIQKRFRRQRNFVTRNKVTVIHAVAIPVQPAP 72
Query: 87 EDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
+SA+ RKQ+AE YGFRQ+GEPL ++VT+KDVI+ LPK+V
Sbjct: 73 VESAEYRKQLAEDYGFRQVGEPLSDDVTLKDVINPLPKEVF 113
>gi|58013371|gb|AAW63039.1| plastidial delta-12 oleate desaturase [Olea europaea]
Length = 443
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 15 MPSATSCCTVRKQGPHQRPTGSQKIG--CFSSPGLCQLKWESLLVKGVKHKRCSIPSRGT 72
M S T GP +R +I F G LK ES K + K C + SR
Sbjct: 1 MASRVPHSTFLSLGPQKRLAEGSRISPQNFICSGRYLLKLESGPHKRSEQKNCLVYSRKN 60
Query: 73 RFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
+ ++AVAV V D+A+ RKQ++E+YGFRQIGEPLP+NVT+KD++D+LP+KV
Sbjct: 61 KIVKAVAVSVPSSPADNAEDRKQLSENYGFRQIGEPLPDNVTLKDIVDTLPRKVF 115
>gi|50261903|gb|AAT72504.1| AT4G30950 [Arabidopsis lyrata subsp. petraea]
Length = 203
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 60/77 (77%), Gaps = 3/77 (3%)
Query: 54 SLLVKGV--KHKRCSIP-SRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLP 110
LL+KG + +RC P R I+AVAVPVAPPS DSA+ R+Q+AESYGF+QIGE LP
Sbjct: 8 DLLLKGSTRRSRRCVAPVKRRIGCIKAVAVPVAPPSADSAEDREQLAESYGFKQIGENLP 67
Query: 111 ENVTMKDVIDSLPKKVL 127
+NVT+KD++D+LPK+V
Sbjct: 68 DNVTLKDIMDTLPKEVF 84
>gi|325658408|gb|ADZ39685.1| chloroplast omega-6 fatty acid desaturase [Olea europaea subsp.
europaea]
Length = 329
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 15 MPSATSCCTVRKQGPHQRPTGSQKIG--CFSSPGLCQLKWESLLVKGVKHKRCSIPSRGT 72
M S + T GP +R +I F G LK ES K + K C + SR
Sbjct: 1 MASRVAHSTFLFLGPQKRLAEGNRISPQNFICSGRYLLKLESGPHKRSEQKNCLVYSRKN 60
Query: 73 RFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
+ ++AVAV V D+A RKQ++E+YGFRQIGEPLP+NVT+KD++D+LP+KV
Sbjct: 61 KIVKAVAVSVPSSPADNAKDRKQLSENYGFRQIGEPLPDNVTLKDIVDTLPRKVF 115
>gi|54873456|gb|AAV41001.1| chloroplast fatty acid desaturase 6 [Olea europaea subsp. europaea]
Length = 443
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 15 MPSATSCCTVRKQGPHQRPTGSQKIG--CFSSPGLCQLKWESLLVKGVKHKRCSIPSRGT 72
M S T GP +R +I F G LK ES K + K C + SR
Sbjct: 1 MASRVPHSTFLFLGPQKRLAEGSRISPQNFICSGRYLLKLESGPHKRSEQKNCLVYSRKN 60
Query: 73 RFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
+ ++AVAV V D+A+ RKQ++E+YGFRQIGEPLP+NVT+KD++D+LP+KV
Sbjct: 61 KIVKAVAVSVPSSPADNAEDRKQLSENYGFRQIGEPLPDNVTLKDIVDTLPRKVF 115
>gi|49355354|gb|AAT65208.1| omega-6 desaturase [Brassica napus]
Length = 443
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 62/84 (73%)
Query: 44 SPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFR 103
SPG+ ++ LL+KG + + I+AV+VPVAPPS D+A+ R+Q+AESYGF+
Sbjct: 31 SPGVYAVRPIDLLLKGTRRTFLVPAKKRIGCIKAVSVPVAPPSADNAEDREQLAESYGFK 90
Query: 104 QIGEPLPENVTMKDVIDSLPKKVL 127
QIG+ LP+NVT+KD++D+LPK+V
Sbjct: 91 QIGQNLPDNVTLKDIMDTLPKEVF 114
>gi|1345978|sp|P48627.1|FAD6C_BRANA RecName: Full=Omega-6 fatty acid desaturase, chloroplastic; Flags:
Precursor
gi|457631|gb|AAA50157.1| omega-6 desaturase [Brassica napus]
Length = 443
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 61/84 (72%)
Query: 44 SPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFR 103
SPG+ ++ LL+KG + + I+AV VPVAPPS D+A+ R+Q+AESYGF+
Sbjct: 31 SPGVYAVRPIDLLLKGTRRTFLVPAKKRIGCIKAVFVPVAPPSADNAEDREQLAESYGFK 90
Query: 104 QIGEPLPENVTMKDVIDSLPKKVL 127
QIG+ LP+NVT+KD++D+LPK+V
Sbjct: 91 QIGQDLPDNVTLKDIMDTLPKEVF 114
>gi|1345980|sp|P48629.1|FAD6C_SPIOL RecName: Full=Omega-6 fatty acid desaturase, chloroplastic; Flags:
Precursor
gi|623344|emb|CAA55121.1| n-6 fatty acid desaturase [Spinacia oleracea]
Length = 447
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 63/93 (67%), Gaps = 8/93 (8%)
Query: 43 SSPGLCQLKWESLLVKGVKHKRCSIPSRGTR----FIQAVAVPVAPPS----EDSADCRK 94
+S G+ +KW+ ++ + H R + +GTR +QAVAVPVA PS D+ + K
Sbjct: 27 NSAGISCIKWQRPCLRNLGHVRLNQQRKGTRRKSTLVQAVAVPVAQPSAFPPTDNTEHLK 86
Query: 95 QIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
Q+AE YGF+QIGEPLP++VTM+D+I SLPK+V
Sbjct: 87 QLAERYGFQQIGEPLPDDVTMRDIITSLPKQVF 119
>gi|49355339|gb|AAT65203.1| omega-6 desaturase [Brassica napus]
Length = 443
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 61/84 (72%)
Query: 44 SPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFR 103
SPG+ ++ LL+KG + + I+AV VPVAPP+ D+A+ R+Q+AESYGF+
Sbjct: 31 SPGVYAVRPIDLLLKGTRRTFLVPAKKRIGCIKAVFVPVAPPTADNAEDREQLAESYGFK 90
Query: 104 QIGEPLPENVTMKDVIDSLPKKVL 127
QIG+ LP+NVT+KD++D+LPK+V
Sbjct: 91 QIGQDLPDNVTLKDIMDTLPKEVF 114
>gi|357147907|ref|XP_003574539.1| PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like
[Brachypodium distachyon]
Length = 443
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 42/53 (79%)
Query: 75 IQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
+QA +P+ PP D + RKQ++E YGF+QIGE LP+NVT+KDV+D+LPK+V
Sbjct: 63 LQAAVLPITPPLLDDEEKRKQMSEDYGFKQIGEQLPDNVTLKDVMDTLPKEVF 115
>gi|170298263|gb|ACB14275.1| omega-6 desaturase [Portulaca oleracea]
Length = 457
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 46/62 (74%), Gaps = 4/62 (6%)
Query: 70 RGTRFIQAVAVPVAP----PSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKK 125
R +F+Q V P+AP P+ D + +++AESYGF+QIGEPLP++VT++D+I SLPKK
Sbjct: 68 RKEKFLQHVVAPMAPSAPLPAADDPEYLRKLAESYGFQQIGEPLPDDVTLRDIISSLPKK 127
Query: 126 VL 127
V
Sbjct: 128 VF 129
>gi|242081589|ref|XP_002445563.1| hypothetical protein SORBIDRAFT_07g021640 [Sorghum bicolor]
gi|241941913|gb|EES15058.1| hypothetical protein SORBIDRAFT_07g021640 [Sorghum bicolor]
Length = 445
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 29 PHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSED 88
P +R ++I + G +K + + + H+ RG +QA +PV P D
Sbjct: 21 PAKRSLLPRRIAAGAPAGTFFVKRDVVYNRRSYHQFLPWKQRGG--LQAAVLPVTSPLVD 78
Query: 89 SADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
RKQ+AE YGF QIG+ LP+N+T+KDV+D+LPK+V
Sbjct: 79 DEGERKQMAEDYGFTQIGDELPDNITLKDVMDTLPKEVF 117
>gi|414870355|tpg|DAA48912.1| TPA: putative omega-6 fatty acid desaturase [Zea mays]
Length = 351
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 40/53 (75%)
Query: 75 IQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
+QA +PV PP D +KQ+AE YGF QIG+ LP+++T+KDV+D+LPK+V
Sbjct: 63 LQAAVLPVTPPLLDGEGKKKQMAEEYGFTQIGDELPDDITLKDVMDTLPKEVF 115
>gi|414870356|tpg|DAA48913.1| TPA: putative omega-6 fatty acid desaturase isoform 1 [Zea mays]
gi|414870357|tpg|DAA48914.1| TPA: putative omega-6 fatty acid desaturase isoform 2 [Zea mays]
Length = 452
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 43/61 (70%)
Query: 67 IPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKV 126
+P + +QA +PV PP D +KQ+AE YGF QIG+ LP+++T+KDV+D+LPK+V
Sbjct: 64 LPLKHIGGLQAAVLPVTPPLLDGEGKKKQMAEEYGFTQIGDELPDDITLKDVMDTLPKEV 123
Query: 127 L 127
Sbjct: 124 F 124
>gi|195628958|gb|ACG36241.1| hypothetical protein [Zea mays]
gi|224028707|gb|ACN33429.1| unknown [Zea mays]
gi|414870354|tpg|DAA48911.1| TPA: putative omega-6 fatty acid desaturase [Zea mays]
Length = 443
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 40/53 (75%)
Query: 75 IQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
+QA +PV PP D +KQ+AE YGF QIG+ LP+++T+KDV+D+LPK+V
Sbjct: 63 LQAAVLPVTPPLLDGEGKKKQMAEEYGFTQIGDELPDDITLKDVMDTLPKEVF 115
>gi|168052918|ref|XP_001778886.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669755|gb|EDQ56336.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 454
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/56 (57%), Positives = 42/56 (75%), Gaps = 4/56 (7%)
Query: 75 IQAVAVPVAPPS---EDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
I AVA P+APPS ED+ + R+++AE YGF QIGEP+P +VT+K VIDS P +V
Sbjct: 72 ISAVAAPIAPPSSPLEDAGE-RQRLAEEYGFTQIGEPVPADVTLKKVIDSFPSEVF 126
>gi|116787557|gb|ABK24556.1| unknown [Picea sitchensis]
Length = 460
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 38/49 (77%)
Query: 79 AVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
A+P+AP S + R +I+E YGF QIGEP+P+N+ +K+VIDSLP++V
Sbjct: 84 AMPLAPSSLSDREERNRISEKYGFTQIGEPVPDNIILKNVIDSLPQEVF 132
>gi|42408677|dbj|BAD09897.1| putative Omega-6 fatty acid desaturase, chloroplast precursor
[Oryza sativa Japonica Group]
gi|42408692|dbj|BAD09911.1| putative Omega-6 fatty acid desaturase, chloroplast precursor
[Oryza sativa Japonica Group]
gi|218201215|gb|EEC83642.1| hypothetical protein OsI_29379 [Oryza sativa Indica Group]
gi|222640639|gb|EEE68771.1| hypothetical protein OsJ_27475 [Oryza sativa Japonica Group]
Length = 414
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 88 DSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
D + RKQ+ E YGF+QIGE LP+NVT+KDV+DSLPK+V
Sbjct: 47 DDEEKRKQMCEDYGFKQIGEQLPDNVTLKDVMDSLPKEVF 86
>gi|339697600|gb|AEJ87848.1| omega-6-desaturase [Ginkgo biloba]
Length = 453
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 68 PSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
P + T A+ +APP + RK+I+E YGF QIGEP+P+++T+K V+D+LP++V
Sbjct: 66 PHKRTLNTVVAALRLAPPPLHDMEERKRISEEYGFTQIGEPVPDDLTLKKVMDTLPQEVF 125
>gi|88911216|gb|ABD58898.1| chloroplast omega-6 fatty acid desaturase [Mesostigma viride]
Length = 439
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 11/66 (16%)
Query: 75 IQAVAV-PVAPPSED----------SADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLP 123
I VAV P A P+E+ +A+ R ++A+ YGF QIGE +P+ VT+K +I+S+P
Sbjct: 52 ISMVAVAPSAQPAEEPPRVQTSPPLTAEQRAELAKKYGFEQIGEEVPDGVTLKQIIESMP 111
Query: 124 KKVLFL 129
+V L
Sbjct: 112 AEVFEL 117
>gi|307103599|gb|EFN51858.1| hypothetical protein CHLNCDRAFT_37265 [Chlorella variabilis]
Length = 425
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 30/39 (76%)
Query: 89 SADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
S D R+++A+ +GFR IG+ LP +VT++D+I ++P +V
Sbjct: 59 SDDQRQELAKQFGFRSIGKELPNDVTLQDIIKTMPPEVF 97
>gi|224589903|gb|ACN59567.1| plastid delta12 fatty acid desaturase [Chlorella vulgaris]
Length = 423
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 78 VAVPVAPPSED--SADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
V +P PP + R ++A+ +GFR IG+ LP++VT++DVI S+P +V
Sbjct: 44 VGLPACPPQVGYLGDEERAELAKQFGFRSIGKELPDSVTLQDVIKSMPPQVF 95
>gi|282929659|gb|ADB03432.1| plastid delta12 fatty acid desaturase [Chlorella vulgaris]
Length = 423
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 78 VAVPVAPPSED--SADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
V +P PP + R ++A+ +GFR IG+ LP++VT++D+I S+P +V
Sbjct: 44 VGLPACPPQVGYLGDEERAELAKQFGFRSIGKELPDSVTLQDIIKSMPPQVF 95
>gi|302836744|ref|XP_002949932.1| omega-6-FAD, chloroplast isoform [Volvox carteri f. nagariensis]
gi|300264841|gb|EFJ49035.1| omega-6-FAD, chloroplast isoform [Volvox carteri f. nagariensis]
Length = 424
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 77 AVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
A++VPV +++ R Q+A G++ IG LP+NVT+ D++ S+P +V
Sbjct: 47 ALSVPVNQLTDEE---RAQLARELGYKSIGRELPDNVTLTDIVKSMPSEVF 94
>gi|5821436|dbj|BAA83822.1| chloroplast w6 desaturase [Chlamydomonas sp. W80]
Length = 421
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 42/68 (61%), Gaps = 7/68 (10%)
Query: 63 KRCSIPSRGTRFIQAVAVPVAPPSED---SADCRKQIAESYGFRQIGEPLPENVTMKDVI 119
+RC++ R A A+ V+ P++ S + R +A+ G+RQ+G+ LP++VT+ ++
Sbjct: 29 RRCAVKVR----TAAPAMTVSDPTKAGFMSDEDRAALAKELGYRQLGKELPDHVTLNTIV 84
Query: 120 DSLPKKVL 127
S+PK+V
Sbjct: 85 QSMPKEVF 92
>gi|302797573|ref|XP_002980547.1| hypothetical protein SELMODRAFT_153911 [Selaginella moellendorffii]
gi|300151553|gb|EFJ18198.1| hypothetical protein SELMODRAFT_153911 [Selaginella moellendorffii]
Length = 419
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 19/89 (21%)
Query: 42 FSSPGLCQLK--WESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAES 99
F S G C+L+ +L V K+ RG ++AVAVP+ R+++ S
Sbjct: 25 FKSSGFCRLRSPRSQILDVSVNPKK-----RGVG-VRAVAVPI----------REEVQTS 68
Query: 100 Y-GFRQIGEPLPENVTMKDVIDSLPKKVL 127
GF Q+GEP+PE +++ DV+ +LPK+V
Sbjct: 69 IPGFTQLGEPVPEGLSLNDVVKTLPKEVF 97
>gi|384250753|gb|EIE24232.1| chloroplast w6 desaturase [Coccomyxa subellipsoidea C-169]
Length = 402
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 89 SADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
SA+ R +A+ G+R IG LP +VT+ VI SLPK+V
Sbjct: 36 SAEDRTALAQELGYRTIGADLPNDVTLTQVISSLPKEVF 74
>gi|12655931|gb|AAK00661.1|AF229389_1 omega 6 reductase [Brassica oleracea]
Length = 222
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 23/25 (92%)
Query: 103 RQIGEPLPENVTMKDVIDSLPKKVL 127
+QIG+ LP+NVT+KD++D+LPK+V
Sbjct: 1 KQIGQDLPDNVTLKDIMDTLPKEVF 25
>gi|159469834|ref|XP_001693068.1| omega-6-FAD, chloroplast isoform [Chlamydomonas reinhardtii]
gi|2696717|dbj|BAA23881.1| chloroplast w6 desaturase [Chlamydomonas reinhardtii]
gi|158277870|gb|EDP03637.1| omega-6-FAD, chloroplast isoform [Chlamydomonas reinhardtii]
Length = 424
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 77 AVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
A++VPV +++ R +A G++ IG LP+NV++ D+I S+P +V
Sbjct: 47 ALSVPVNQLTDEE---RANLARELGYKSIGRELPDNVSLTDIIKSMPAEVF 94
>gi|3928875|gb|AAC79705.1| putative chloroplast desaturase [Acetabularia acetabulum]
Length = 186
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 89 SADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKK 125
S + R A GFR IG+ LPE+VT+ +V+ SLPK+
Sbjct: 45 SQEQRNAWARQIGFRSIGKQLPEDVTLTEVVKSLPKE 81
>gi|302790099|ref|XP_002976817.1| hypothetical protein SELMODRAFT_13166 [Selaginella moellendorffii]
gi|300155295|gb|EFJ21927.1| hypothetical protein SELMODRAFT_13166 [Selaginella moellendorffii]
Length = 330
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 101 GFRQIGEPLPENVTMKDVIDSLPKKVL 127
GF Q+GEP+PE +++ DV+ +LPK+V
Sbjct: 1 GFTQLGEPVPEGLSLNDVVKTLPKEVF 27
>gi|340812273|gb|AEK76074.1| chloroplast delta-12 fatty acid desaturase [Chlamydomonas sp.
ICE-L]
Length = 422
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 76 QAVAVPVAPPSEDSADC-RKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVLFLFASSC 134
+A A + D D R Q+A+ G+ +IG+ LP VT+ +V+ S+P +V + +
Sbjct: 42 KANAFTIPASMNDLTDAERHQLAKDLGYTKIGKELPSTVTLNEVVRSMPAEVFEIDHTKA 101
Query: 135 TLNA 138
L+A
Sbjct: 102 WLSA 105
>gi|440463510|gb|ELQ33088.1| hypothetical protein OOU_Y34scaffold01003g7 [Magnaporthe oryzae
Y34]
gi|440479683|gb|ELQ60435.1| hypothetical protein OOW_P131scaffold01291g34 [Magnaporthe oryzae
P131]
Length = 239
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 60 VKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMK--- 116
V H + GTR VP APP AD + G GEP ++V +
Sbjct: 105 VDHYYLGVEIVGTRITATAEVPKAPPPHGLADNMSALGYVIGRVYDGEPTVDDVPVSFEV 164
Query: 117 --DVIDSLPKKVLFLFASSCTLNAYV------VLLETTCLI 149
VIDS P K F TL AY +LL+ LI
Sbjct: 165 DGKVIDSRPAKFPFEGGMLATLVAYAKSQQPHLLLKAGMLI 205
>gi|389640000|ref|XP_003717633.1| hypothetical protein MGG_09718 [Magnaporthe oryzae 70-15]
gi|351643452|gb|EHA51314.1| hypothetical protein MGG_09718 [Magnaporthe oryzae 70-15]
Length = 328
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 11/108 (10%)
Query: 53 ESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPEN 112
++ + V H + GTR VP APP AD + G GEP ++
Sbjct: 187 KTTIAAAVDHYYLGVEIVGTRITATAEVPKAPPPHGLADNMSALGYVIGRVYDGEPTVDD 246
Query: 113 VTMK-----DVIDSLPKKVLFLFASSCTLNAYV------VLLETTCLI 149
V + VIDS P K F TL AY +LL+ LI
Sbjct: 247 VPVSFEVDGKVIDSRPAKFPFEGGMLATLVAYAKSQQPHLLLKAGMLI 294
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,244,409,176
Number of Sequences: 23463169
Number of extensions: 85717527
Number of successful extensions: 192576
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 192515
Number of HSP's gapped (non-prelim): 51
length of query: 149
length of database: 8,064,228,071
effective HSP length: 112
effective length of query: 37
effective length of database: 9,731,320,439
effective search space: 360058856243
effective search space used: 360058856243
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)