BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039077
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis
thaliana GN=FAD6 PE=1 SV=2
Length = 448
Score = 100 bits (248), Expect = 4e-21, Method: Composition-based stats.
Identities = 57/106 (53%), Positives = 71/106 (66%), Gaps = 6/106 (5%)
Query: 28 GPHQRPTGSQKIGCFS---SPGLCQLKWESLLVKGVKHK--RCSIP-SRGTRFIQAVAVP 81
GP Q K+ S SPG+ +K LL+KG H+ RC P R I+AVA P
Sbjct: 14 GPQQCLPRVPKLAASSARVSPGVYAVKPIDLLLKGRTHRSRRCVAPVKRRIGCIKAVAAP 73
Query: 82 VAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
VAPPS DSA+ R+Q+AESYGFRQIGE LPENVT+KD++D+LPK+V
Sbjct: 74 VAPPSADSAEDREQLAESYGFRQIGEDLPENVTLKDIMDTLPKEVF 119
>sp|P48628|FAD6C_SOYBN Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2
SV=1
Length = 424
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 63/101 (62%)
Query: 27 QGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPS 86
+G +Q+P + I SPG+ L L+ K + +R + I AVA+PV P
Sbjct: 13 KGSYQKPVLRRDIAARYSPGIFSLNSNGLIQKRFRRQRNFVTRNKVTVIHAVAIPVQPAP 72
Query: 87 EDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
+SA+ RKQ+AE YGFRQ+GEPL ++VT+KDVI+ LPK+V
Sbjct: 73 VESAEYRKQLAEDYGFRQVGEPLSDDVTLKDVINPLPKEVF 113
>sp|P48627|FAD6C_BRANA Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2
SV=1
Length = 443
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 61/84 (72%)
Query: 44 SPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFR 103
SPG+ ++ LL+KG + + I+AV VPVAPPS D+A+ R+Q+AESYGF+
Sbjct: 31 SPGVYAVRPIDLLLKGTRRTFLVPAKKRIGCIKAVFVPVAPPSADNAEDREQLAESYGFK 90
Query: 104 QIGEPLPENVTMKDVIDSLPKKVL 127
QIG+ LP+NVT+KD++D+LPK+V
Sbjct: 91 QIGQDLPDNVTLKDIMDTLPKEVF 114
>sp|P48629|FAD6C_SPIOL Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea
GN=FAD6 PE=1 SV=1
Length = 447
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 63/93 (67%), Gaps = 8/93 (8%)
Query: 43 SSPGLCQLKWESLLVKGVKHKRCSIPSRGTR----FIQAVAVPVAPPS----EDSADCRK 94
+S G+ +KW+ ++ + H R + +GTR +QAVAVPVA PS D+ + K
Sbjct: 27 NSAGISCIKWQRPCLRNLGHVRLNQQRKGTRRKSTLVQAVAVPVAQPSAFPPTDNTEHLK 86
Query: 95 QIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
Q+AE YGF+QIGEPLP++VTM+D+I SLPK+V
Sbjct: 87 QLAERYGFQQIGEPLPDDVTMRDIITSLPKQVF 119
>sp|Q8R4H2|ARHGC_MOUSE Rho guanine nucleotide exchange factor 12 OS=Mus musculus
GN=Arhgef12 PE=1 SV=2
Length = 1543
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 12 AHVMPSATSCCTVRKQGPHQRPTGSQKIGCFSSPGLC 48
A M SATS + ++G + TG++++G S+PG C
Sbjct: 663 ASSMSSATSGTALSQEGGRENDTGTKQVGEASAPGDC 699
>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4
Length = 34350
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 46 GLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAP 84
GL + KW + VK + + S PSR T IQAV AP
Sbjct: 14577 GLEEGKWYAYRVKALNRQGASKPSRPTEEIQAVDTQEAP 14615
>sp|A9KTM9|XNI_SHEB9 Protein Xni OS=Shewanella baltica (strain OS195) GN=xni PE=3 SV=1
Length = 262
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 99 SYGFRQIGEPLPENVTMKD--VIDSLPKKVL 127
SY Q+ LP N+ +KD VIDSLP+K +
Sbjct: 229 SYKLAQLQTDLPLNINLKDFRVIDSLPEKTI 259
>sp|A1A5Q4|CF165_RAT UPF0704 protein C6orf165 homolog OS=Rattus norvegicus PE=2 SV=1
Length = 622
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 30/152 (19%)
Query: 1 MKIASEQMASVAHVMPSATSCC--TVRKQGPHQRPTGSQKIGCFSSPGLCQLKWESLLVK 58
+KI E A++ V P A C T+ K+ + QLK +++V
Sbjct: 150 IKIVREATAALQSVFPQAELCTFLTLSKKDKER-----------------QLKELTMIVT 192
Query: 59 GVK--HKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFR--QIGEPLPENVT 114
G++ ++ C G + A+ + P + D + QIA+ FR I E + N
Sbjct: 193 GIRLFNRDCGKGGEGIDDLPAILLEAIPATTHHIDSQLQIAQEQAFRYTAIIEKVTNNPL 252
Query: 115 M-KDVIDSLPKKVLFLFASSCTLNAYVVLLET 145
M K++ + K+ L+ + Y + L+T
Sbjct: 253 MAKELQPYMLKEALY------NVRQYEIFLQT 278
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,514,255
Number of Sequences: 539616
Number of extensions: 2063391
Number of successful extensions: 3650
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3639
Number of HSP's gapped (non-prelim): 10
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)