Query 039077
Match_columns 149
No_of_seqs 30 out of 32
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 06:05:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02598 omega-6 fatty acid de 99.9 1.2E-23 2.7E-28 183.1 5.0 97 17-134 3-99 (421)
2 PLN02498 omega-3 fatty acid de 96.0 0.0051 1.1E-07 55.8 2.7 57 77-134 64-123 (450)
3 PF11960 DUF3474: Domain of un 87.1 0.47 1E-05 37.8 2.2 62 69-133 55-119 (136)
4 PLN02505 omega-6 fatty acid de 86.9 0.21 4.6E-06 44.0 0.3 25 110-134 28-52 (381)
5 PRK14529 adenylate kinase; Pro 56.8 12 0.00025 30.8 2.9 33 104-136 54-89 (223)
6 PF11685 DUF3281: Protein of u 55.7 6.9 0.00015 34.3 1.5 36 96-133 154-195 (268)
7 TIGR01351 adk adenylate kinase 54.6 9.7 0.00021 29.3 2.1 34 103-136 52-90 (210)
8 PF12200 DUF3597: Domain of un 50.0 12 0.00026 29.6 1.9 16 89-104 84-99 (127)
9 PF02317 Octopine_DH: NAD/NADP 44.9 17 0.00037 27.6 2.0 32 90-123 57-97 (152)
10 PRK00279 adk adenylate kinase; 43.8 20 0.00043 27.7 2.3 33 103-135 53-89 (215)
11 PF07862 Nif11: Nitrogen fixat 41.0 16 0.00035 22.8 1.2 22 87-108 26-47 (49)
12 PRK06944 sulfur carrier protei 40.3 28 0.00061 22.3 2.3 26 108-133 11-39 (65)
13 PF07905 PucR: Purine cataboli 40.3 29 0.00063 25.2 2.6 58 66-125 64-121 (123)
14 PTZ00088 adenylate kinase 1; P 38.0 27 0.00058 28.4 2.3 32 105-136 61-98 (229)
15 cd00754 MoaD Ubiquitin domain 36.4 22 0.00047 23.1 1.3 28 96-123 9-36 (80)
16 PF14223 UBN2: gag-polypeptide 35.6 22 0.00048 24.9 1.3 23 103-125 58-80 (119)
17 PLN02674 adenylate kinase 34.1 29 0.00064 28.9 2.0 34 104-137 85-122 (244)
18 PF06823 DUF1236: Protein of u 31.9 12 0.00026 25.9 -0.5 20 104-127 18-37 (65)
19 PF05821 NDUF_B8: NADH-ubiquin 31.6 33 0.00071 28.0 1.8 28 85-112 35-63 (179)
20 TIGR03798 ocin_TIGR03798 bacte 31.5 19 0.00042 23.9 0.4 22 88-109 25-46 (64)
21 PF01983 CofC: Guanylyl transf 31.3 76 0.0016 26.3 3.9 34 77-124 2-43 (217)
22 PRK02496 adk adenylate kinase; 30.8 44 0.00096 24.8 2.3 34 102-135 53-90 (184)
23 PF00406 ADK: Adenylate kinase 30.7 31 0.00068 24.9 1.4 34 104-137 50-87 (151)
24 TIGR01209 RNA ligase, Pab1020 29.0 27 0.00059 31.5 1.1 37 89-125 175-216 (374)
25 PLN02459 probable adenylate ki 28.6 47 0.001 28.3 2.4 35 103-137 82-122 (261)
26 KOG3317 Translocon-associated 28.0 17 0.00038 30.5 -0.3 36 95-132 43-78 (188)
27 cd01792 ISG15_repeat1 ISG15 ub 27.9 80 0.0017 21.2 3.0 38 80-118 17-63 (80)
28 PF11272 DUF3072: Protein of u 27.7 64 0.0014 22.6 2.5 24 89-117 20-43 (57)
29 PF11869 DUF3389: Protein of u 27.4 52 0.0011 24.1 2.1 18 85-102 55-72 (75)
30 PRK14528 adenylate kinase; Pro 26.1 55 0.0012 25.1 2.1 34 102-135 53-90 (186)
31 COG1959 Predicted transcriptio 24.8 23 0.0005 27.2 -0.2 24 110-133 71-99 (150)
32 PRK15183 Vi polysaccharide bio 23.8 52 0.0011 26.4 1.7 26 90-115 116-142 (143)
33 PRK14530 adenylate kinase; Pro 23.3 1.2E+02 0.0025 23.4 3.5 32 104-135 61-93 (215)
34 PRK07757 acetyltransferase; Pr 23.1 40 0.00086 23.7 0.8 13 95-107 110-122 (152)
35 PF13808 DDE_Tnp_1_assoc: DDE_ 22.8 52 0.0011 23.1 1.4 34 92-128 49-82 (90)
36 PF00763 THF_DHG_CYH: Tetrahyd 22.8 44 0.00096 24.5 1.0 31 92-122 49-79 (117)
37 PRK14527 adenylate kinase; Pro 22.6 73 0.0016 24.0 2.2 33 103-135 59-94 (191)
38 PF02597 ThiS: ThiS family; I 22.1 38 0.00082 21.7 0.5 26 96-123 7-32 (77)
39 TIGR02540 gpx7 putative glutat 21.8 83 0.0018 22.9 2.3 53 51-103 32-88 (153)
40 cd01428 ADK Adenylate kinase ( 21.6 70 0.0015 23.4 1.9 30 106-135 55-88 (194)
41 cd01481 vWA_collagen_alpha3-VI 21.5 2.8E+02 0.0061 20.9 5.2 57 76-132 108-165 (165)
42 PRK14194 bifunctional 5,10-met 21.4 65 0.0014 28.1 1.9 32 91-122 52-83 (301)
43 cd02417 Peptidase_C39_likeA A 21.3 1.1E+02 0.0023 20.8 2.7 37 88-127 39-75 (121)
44 PLN02799 Molybdopterin synthas 21.1 64 0.0014 21.6 1.5 28 95-122 11-38 (82)
45 PF12812 PDZ_1: PDZ-like domai 20.8 59 0.0013 22.7 1.3 21 104-124 57-77 (78)
46 CHL00058 petD cytochrome b6/f 20.1 76 0.0016 25.7 1.9 34 84-117 6-40 (160)
47 COG1423 ATP-dependent DNA liga 20.0 68 0.0015 29.6 1.8 36 89-125 183-224 (382)
No 1
>PLN02598 omega-6 fatty acid desaturase
Probab=99.88 E-value=1.2e-23 Score=183.11 Aligned_cols=97 Identities=44% Similarity=0.617 Sum_probs=84.8
Q ss_pred CCcceeeEeecCCCCCCCCcccccccCCCCceecchhhhhhhccccccccccCCCcceeeEEEeecCCCCCCCHHHHHHH
Q 039077 17 SATSCCTVRKQGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQI 96 (149)
Q Consensus 17 ~~~~~~~~~f~gp~~~P~~~~r~aa~~spG~~~lk~~~li~Kg~~~~~~~~~~rr~~~vqAVavPVappp~Ds~e~R~ql 96 (149)
++..-+++.|+||+++|..+.++......|+ +.++|+.+.+|||++||++|+. |||+||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 61 (421)
T PLN02598 3 SRIADAVFAFSGSQRALVRRAKLPAFLRLAA------------------AARKRRQGNIQAVAVPVAPPSA---EERKQL 61 (421)
T ss_pred cccccchhccCCccccccccccchhhhhccc------------------cccccccccceeeeecCCCCCH---HHHHHH
Confidence 3444577999999999888877665555565 7789999999999999998665 999999
Q ss_pred HHhhCchhcCCCCCCcccHHHHhhhcCceeeEeeccee
Q 039077 97 AESYGFRQIGEPLPENVTMKDVIDSLPKKVLFLFASSC 134 (149)
Q Consensus 97 Ae~yGf~qIGe~LPd~VTLkdVi~sLPkeVFeidd~~~ 134 (149)
||+|||+|||||+|+++||+||.++||||+||.|+.+-
T Consensus 62 ~~~~~~~~~~~~~~~~~tl~~i~~aiP~~~F~~s~~rs 99 (421)
T PLN02598 62 AESYGFTQIGEPLPDNVTLKDVVKTLPKEVFEIDDFKA 99 (421)
T ss_pred HHhhChhhcCCcCCCCcCHHHHHHhCCHHHcCCCHHHH
Confidence 99999999999999999999999999999999998764
No 2
>PLN02498 omega-3 fatty acid desaturase
Probab=95.95 E-value=0.0051 Score=55.77 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=39.6
Q ss_pred EEEeecCCCCCCCHHHHHHHHHhhCchhc---CCCCCCcccHHHHhhhcCceeeEeeccee
Q 039077 77 AVAVPVAPPSEDSADCRKQIAESYGFRQI---GEPLPENVTMKDVIDSLPKKVLFLFASSC 134 (149)
Q Consensus 77 AVavPVappp~Ds~e~R~qlAe~yGf~qI---Ge~LPd~VTLkdVi~sLPkeVFeidd~~~ 134 (149)
.|++|+..+..+ +|++.+.+++.|+.+. ...-|.+.||+||.+.+||++||-|..+-
T Consensus 64 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~tl~dir~aIP~hcF~~s~~rs 123 (450)
T PLN02498 64 NVSAPLTVPSGE-EEEDEEGVNGVGEDEEGEFDPGAPPPFNLADIRAAIPKHCWVKNPWRS 123 (450)
T ss_pred eecccCcccCCC-cchhhhhhhhcccccccccCCCCCCCCCHHHHHHhCCHHHcCCChHHH
Confidence 467777643333 3445577777776542 22345788999999999999999997654
No 3
>PF11960 DUF3474: Domain of unknown function (DUF3474); InterPro: IPR021863 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 126 to 140 amino acids in length. This domain is found associated with PF00487 from PFAM. ; GO: 0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, 0055114 oxidation-reduction process
Probab=87.06 E-value=0.47 Score=37.77 Aligned_cols=62 Identities=21% Similarity=0.327 Sum_probs=41.4
Q ss_pred CCCcceeeEEEeecCCCCCCCHHHH---HHHHHhhCchhcCCCCCCcccHHHHhhhcCceeeEeecce
Q 039077 69 SRGTRFIQAVAVPVAPPSEDSADCR---KQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVLFLFASS 133 (149)
Q Consensus 69 ~rr~~~vqAVavPVappp~Ds~e~R---~qlAe~yGf~qIGe~LPd~VTLkdVi~sLPkeVFeidd~~ 133 (149)
.+++.....|++|+..+..+.+|+. ..-.++-+|. -|+ |...||+||=+-+||..|+=|..+
T Consensus 55 ~~~r~w~l~VsaP~~~~~~~~e~~~~~~~~~~~~~~fd-p~a--pPPFtL~dIraAIPkHCf~k~~~r 119 (136)
T PF11960_consen 55 FRRRNWALNVSAPLRVPSVEEEEEEVSSNKEEEEEEFD-PGA--PPPFTLADIRAAIPKHCFVKSPWR 119 (136)
T ss_pred ccccCcceeeeccCcccccccchhhccccccccccccC-CCC--CCCcCHHHHHhhcChhhcCCChHH
Confidence 4445566778999988777766665 1222233343 233 346799999999999999977543
No 4
>PLN02505 omega-6 fatty acid desaturase
Probab=86.92 E-value=0.21 Score=44.03 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=22.3
Q ss_pred CCcccHHHHhhhcCceeeEeeccee
Q 039077 110 PENVTMKDVIDSLPKKVLFLFASSC 134 (149)
Q Consensus 110 Pd~VTLkdVi~sLPkeVFeidd~~~ 134 (149)
+.++||+||.+++||++||.|+.+.
T Consensus 28 ~p~~tl~~ir~aiP~~~f~~s~~rs 52 (381)
T PLN02505 28 KPPFTLGDIKKAIPPHCFKRSVLRS 52 (381)
T ss_pred CCCccHHHHHHhCCHHhcCCCHHHH
Confidence 4678999999999999999998765
No 5
>PRK14529 adenylate kinase; Provisional
Probab=56.76 E-value=12 Score=30.78 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=24.5
Q ss_pred hcCCCCCCcccHHHHhhhc---CceeeEeecceeec
Q 039077 104 QIGEPLPENVTMKDVIDSL---PKKVLFLFASSCTL 136 (149)
Q Consensus 104 qIGe~LPd~VTLkdVi~sL---PkeVFeidd~~~~~ 136 (149)
.-|+-+||+++.+-|.+.| ++.-|=||+|-=|+
T Consensus 54 ~~G~lvpdei~~~lv~~~l~~~~~~g~iLDGfPRt~ 89 (223)
T PRK14529 54 DRGDLVPDDITIPMILETLKQDGKNGWLLDGFPRNK 89 (223)
T ss_pred hccCcchHHHHHHHHHHHHhccCCCcEEEeCCCCCH
Confidence 4599999999988665555 45678888886554
No 6
>PF11685 DUF3281: Protein of unknown function (DUF3281); InterPro: IPR021699 This family of bacterial proteins has no known function.
Probab=55.65 E-value=6.9 Score=34.35 Aligned_cols=36 Identities=28% Similarity=0.491 Sum_probs=28.7
Q ss_pred HHHhhCchhcCCCCCCcccHHHHhhhcCc------eeeEeecce
Q 039077 96 IAESYGFRQIGEPLPENVTMKDVIDSLPK------KVLFLFASS 133 (149)
Q Consensus 96 lAe~yGf~qIGe~LPd~VTLkdVi~sLPk------eVFeidd~~ 133 (149)
...++=|. .| +||++.||.++++.|-. -.|-.|++.
T Consensus 154 v~~ShVF~-tg-~LP~glTlq~LVdaLN~n~~~AhGTFsadGsn 195 (268)
T PF11685_consen 154 VSNSHVFQ-TG-TLPSGLTLQDLVDALNENSDSAHGTFSADGSN 195 (268)
T ss_pred ecceeeec-CC-CCCCCCcHHHHHHHhhccchhcceeEeccCCe
Confidence 44457776 67 79999999999999975 478888874
No 7
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=54.65 E-value=9.7 Score=29.28 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=24.2
Q ss_pred hhcCCCCCCcccHHHHhhhcCc-----eeeEeecceeec
Q 039077 103 RQIGEPLPENVTMKDVIDSLPK-----KVLFLFASSCTL 136 (149)
Q Consensus 103 ~qIGe~LPd~VTLkdVi~sLPk-----eVFeidd~~~~~ 136 (149)
..-|+.+||+++.+-+-+.|-+ .-|=||+|-.+.
T Consensus 52 ~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~ilDGfPrt~ 90 (210)
T TIGR01351 52 MEKGELVPDEIVNQLVKERLTQNQDNENGFILDGFPRTL 90 (210)
T ss_pred HhCCCCCCHHHHHHHHHHHHhcCcccCCcEEEeCCCCCH
Confidence 4558999999887766555533 568899986654
No 8
>PF12200 DUF3597: Domain of unknown function (DUF3597); InterPro: IPR022016 This family of proteins is found in bacteria, eukaryotes and viruses. Proteins in this family are typically between 126 and 281 amino acids in length. The function of this domain is unknown. The structure of this domain has been found to contain five helices with a long flexible loop between helices one and two. ; PDB: 2GQB_A.
Probab=49.96 E-value=12 Score=29.60 Aligned_cols=16 Identities=31% Similarity=0.582 Sum_probs=12.4
Q ss_pred CHHHHHHHHHhhCchh
Q 039077 89 SADCRKQIAESYGFRQ 104 (149)
Q Consensus 89 s~e~R~qlAe~yGf~q 104 (149)
|-+.||+||+++||.-
T Consensus 84 Sl~aRkeLA~eL~~~~ 99 (127)
T PF12200_consen 84 SLAARKELAKELGYTG 99 (127)
T ss_dssp SHHHHHHHHHHHT---
T ss_pred CHHHHHHHHHHhCCCC
Confidence 7899999999999973
No 9
>PF02317 Octopine_DH: NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain; InterPro: IPR003421 This group of enzymes act on the CH-NH substrate bond using NAD(+) or NADP(+) as an acceptor. This domain is found primarily in octopine dehydrogenase (1.5.1.11 from EC), nopaline dehydrogenase (1.5.1.19 from EC), and lysopine dehydrogenase (1.5.1.16 from EC). NADPH is the preferred cofactor, but NADH is also used. Octopine dehydrogenase is involved in the reductive condensation of arginine and pyruvic acid to D-octopine []. Opine dehydrogenases can be found in both bacteria and marine cephalopods. In bacteria, some of these opine dehydrogenases are involved in crown gall tumours that are produced by Agrobacterium spp., and which encode for the opine dehydrogenases on a Ti-plasmid. These bacteria can transfer a portion of this plasmid (T-DNA) to a susceptible plant cell; the T-DNA then integrates into the plant nuclear genome, where its genes can be expressed. Some of these genes direct the synthesis and secretion of unusual amino acid and sugar derivatives called opines - these opines are used as a carbon and sometimes a nitrogen source by the infecting bacteria. Opine dehydrogenases are also found in the marine invertebrate cephalopods (octopuses, squid, and cuttlefish). For example in marine cephalopods, octopine dehydrogenase activity in mantle muscle is significantly correlated with a species' ability to buffer the acidic end products of anaerobic metabolism, with activity declining strongly with a species' habitat depth [].; GO: 0016491 oxidoreductase activity, 0050662 coenzyme binding, 0055114 oxidation-reduction process; PDB: 3IQD_B 3C7D_B 3C7A_A 3C7C_B 1BG6_A.
Probab=44.93 E-value=17 Score=27.60 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhCchhcCCCCCC---------cccHHHHhhhcC
Q 039077 90 ADCRKQIAESYGFRQIGEPLPE---------NVTMKDVIDSLP 123 (149)
Q Consensus 90 ~e~R~qlAe~yGf~qIGe~LPd---------~VTLkdVi~sLP 123 (149)
++||.++|+.+|++. .++.+ .-+|.+++.+.|
T Consensus 57 D~Er~ai~~alg~~~--~~~~~~~~~~y~~~~~~l~~~~~~~~ 97 (152)
T PF02317_consen 57 DEERMAIARALGVEL--FSLSEVLNRWYGVDASTLYEAIRTNP 97 (152)
T ss_dssp HHHHHHHHHCCCHHS----HCCH--HHHBS--SSHHHHHHTBG
T ss_pred HHHHHHHHHHHCccc--CCHHHHHHHHHcCCccHHHHHHHhhh
Confidence 899999999999987 44444 345666666655
No 10
>PRK00279 adk adenylate kinase; Reviewed
Probab=43.81 E-value=20 Score=27.70 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=22.5
Q ss_pred hhcCCCCCCcccHHHHhhhcCc----eeeEeecceee
Q 039077 103 RQIGEPLPENVTMKDVIDSLPK----KVLFLFASSCT 135 (149)
Q Consensus 103 ~qIGe~LPd~VTLkdVi~sLPk----eVFeidd~~~~ 135 (149)
..-|+.+|++++.+-|-+.|-+ .-|=||+|--+
T Consensus 53 ~~~g~~~p~~~~~~~i~~~l~~~~~~~g~VlDGfPr~ 89 (215)
T PRK00279 53 MDAGELVPDEIVIGLVKERLAQPDCKNGFLLDGFPRT 89 (215)
T ss_pred HHcCCcCCHHHHHHHHHHHHhccCccCCEEEecCCCC
Confidence 3358899999987766665543 36778886333
No 11
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=41.03 E-value=16 Score=22.82 Aligned_cols=22 Identities=14% Similarity=0.139 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHhhCchhcCCC
Q 039077 87 EDSADCRKQIAESYGFRQIGEP 108 (149)
Q Consensus 87 ~Ds~e~R~qlAe~yGf~qIGe~ 108 (149)
..+.|++-++|+++||.--.++
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft~~e 47 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFTEEE 47 (49)
T ss_pred cCCHHHHHHHHHHcCCCCCHHH
Confidence 3479999999999999754443
No 12
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=40.32 E-value=28 Score=22.27 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=18.9
Q ss_pred CCCCcccHHHHhhhc---CceeeEeecce
Q 039077 108 PLPENVTMKDVIDSL---PKKVLFLFASS 133 (149)
Q Consensus 108 ~LPd~VTLkdVi~sL---PkeVFeidd~~ 133 (149)
++|++.|+.|+++.| |.-+.++|+.-
T Consensus 11 ~~~~~~tl~~ll~~l~~~~~~~v~vN~~~ 39 (65)
T PRK06944 11 SLPDGATVADALAAYGARPPFAVAVNGDF 39 (65)
T ss_pred ECCCCCcHHHHHHhhCCCCCeEEEECCEE
Confidence 368889999999876 55566666643
No 13
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=40.27 E-value=29 Score=25.20 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=41.9
Q ss_pred cccCCCcceeeEEEeecCCCCCCCHHHHHHHHHhhCchhcCCCCCCcccHHHHhhhcCce
Q 039077 66 SIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKK 125 (149)
Q Consensus 66 ~~~~rr~~~vqAVavPVappp~Ds~e~R~qlAe~yGf~qIGe~LPd~VTLkdVi~sLPke 125 (149)
++.+=..+.+.|+++-+.+--.+-.++-.++|+++||=.| .+|.++.+-||++..=.+
T Consensus 64 ~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli--~ip~~~~f~~I~~~v~~~ 121 (123)
T PF07905_consen 64 FIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLI--EIPWEVPFSDITREVMRA 121 (123)
T ss_pred HHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEE--EeCCCCCHHHHHHHHHHH
Confidence 3333344455677776665334666888999999999988 589999999999875433
No 14
>PTZ00088 adenylate kinase 1; Provisional
Probab=38.03 E-value=27 Score=28.45 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=21.9
Q ss_pred cCCCCCCcccHHHHhhhcCc------eeeEeecceeec
Q 039077 105 IGEPLPENVTMKDVIDSLPK------KVLFLFASSCTL 136 (149)
Q Consensus 105 IGe~LPd~VTLkdVi~sLPk------eVFeidd~~~~~ 136 (149)
-|+.+||+++.+-+-+.|-+ ..|=+|+|--|+
T Consensus 61 ~G~lvpd~iv~~lv~~~l~~~~~~~~~g~iLDGfPRt~ 98 (229)
T PTZ00088 61 SGNLVPDNLVIAIVKDEIAKVTDDCFKGFILDGFPRNL 98 (229)
T ss_pred cCCcCCHHHHHHHHHHHHHhhccccCceEEEecCCCCH
Confidence 38899999988755555533 568888874433
No 15
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=36.42 E-value=22 Score=23.13 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=18.8
Q ss_pred HHHhhCchhcCCCCCCcccHHHHhhhcC
Q 039077 96 IAESYGFRQIGEPLPENVTMKDVIDSLP 123 (149)
Q Consensus 96 lAe~yGf~qIGe~LPd~VTLkdVi~sLP 123 (149)
|++..|-..+=-++|++.|++|+++.|-
T Consensus 9 l~~~~g~~~~~~~~~~~~tv~~ll~~l~ 36 (80)
T cd00754 9 LREAAGKDEEELELPEGATVGELLDALE 36 (80)
T ss_pred HHHHhCCceEEEECCCCCcHHHHHHHHH
Confidence 4455565444347788889999988764
No 16
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=35.64 E-value=22 Score=24.88 Aligned_cols=23 Identities=30% Similarity=0.690 Sum_probs=21.1
Q ss_pred hhcCCCCCCcccHHHHhhhcCce
Q 039077 103 RQIGEPLPENVTMKDVIDSLPKK 125 (149)
Q Consensus 103 ~qIGe~LPd~VTLkdVi~sLPke 125 (149)
+.+|.+++|..-..-++.+||.+
T Consensus 58 ~~~g~~i~d~~~v~~iL~~Lp~~ 80 (119)
T PF14223_consen 58 RAIGKPISDEDLVSKILRSLPPS 80 (119)
T ss_pred hhcCCcccchhHHHHHHhcCCch
Confidence 68899999999999999999954
No 17
>PLN02674 adenylate kinase
Probab=34.13 E-value=29 Score=28.92 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=23.7
Q ss_pred hcCCCCCCcccHHHHhhhcC----ceeeEeecceeecc
Q 039077 104 QIGEPLPENVTMKDVIDSLP----KKVLFLFASSCTLN 137 (149)
Q Consensus 104 qIGe~LPd~VTLkdVi~sLP----keVFeidd~~~~~~ 137 (149)
.-|+.+||+++..=|-+-|- ..-|=+|+|--|.+
T Consensus 85 ~~G~lvpd~iv~~lv~~~l~~~~~~~g~ilDGfPRt~~ 122 (244)
T PLN02674 85 DKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVV 122 (244)
T ss_pred HcCCccCHHHHHHHHHHHHhCcCcCCcEEEeCCCCCHH
Confidence 35999999998764444442 35688888877643
No 18
>PF06823 DUF1236: Protein of unknown function (DUF1236); InterPro: IPR009642 This family contains a number of hypothetical bacterial proteins of unknown function. Some family members contain more than one copy of the region represented by this family.
Probab=31.92 E-value=12 Score=25.93 Aligned_cols=20 Identities=35% Similarity=0.886 Sum_probs=16.4
Q ss_pred hcCCCCCCcccHHHHhhhcCceee
Q 039077 104 QIGEPLPENVTMKDVIDSLPKKVL 127 (149)
Q Consensus 104 qIGe~LPd~VTLkdVi~sLPkeVF 127 (149)
..|..||++|+|.++ |.++-
T Consensus 18 ~VG~~lP~~V~~~~v----P~~~~ 37 (65)
T PF06823_consen 18 SVGAPLPDTVELYPV----PDEIV 37 (65)
T ss_pred EeCcCCCCccEEEeC----CcccC
Confidence 589999999998765 77655
No 19
>PF05821 NDUF_B8: NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8); InterPro: IPR008699 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several eukaryotic NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI) proteins. NADH:ubiquinone oxidoreductase (complex I) is an extremely complicated multiprotein complex located in the inner mitochondrial membrane. Its main function is the transport of electrons from NADH to ubiquinone, which is accompanied by translocation of protons from the mitochondrial matrix to the intermembrane space. Human complex I appears to consist of 41 subunits [].; GO: 0003954 NADH dehydrogenase activity, 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=31.59 E-value=33 Score=27.95 Aligned_cols=28 Identities=32% Similarity=0.621 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHHHhhCchhc-CCCCCCc
Q 039077 85 PSEDSADCRKQIAESYGFRQI-GEPLPEN 112 (149)
Q Consensus 85 pp~Ds~e~R~qlAe~yGf~qI-Ge~LPd~ 112 (149)
|=-.++|||+..|++||.+.- =+|.|||
T Consensus 35 pyP~t~eer~aaAkKY~l~pedY~P~pDD 63 (179)
T PF05821_consen 35 PYPKTPEERAAAAKKYGLRPEDYEPYPDD 63 (179)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHcCCCCCC
Confidence 445589999999999997643 2445554
No 20
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=31.49 E-value=19 Score=23.86 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHhhCchhcCCCC
Q 039077 88 DSADCRKQIAESYGFRQIGEPL 109 (149)
Q Consensus 88 Ds~e~R~qlAe~yGf~qIGe~L 109 (149)
.+.+++-+||++.||.--+++|
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el 46 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDL 46 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHH
Confidence 4689999999999997655543
No 21
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=31.28 E-value=76 Score=26.30 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=23.2
Q ss_pred EEEeecCC--------CCCCCHHHHHHHHHhhCchhcCCCCCCcccHHHHhhhcCc
Q 039077 77 AVAVPVAP--------PSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPK 124 (149)
Q Consensus 77 AVavPVap--------pp~Ds~e~R~qlAe~yGf~qIGe~LPd~VTLkdVi~sLPk 124 (149)
.+.+||-+ ++.=+.++|.+|+..+ |+||++.+-.
T Consensus 2 ~~VIPvK~~~~aKSRLs~~L~~~eR~~La~aM--------------l~Dvl~al~~ 43 (217)
T PF01983_consen 2 RAVIPVKPLARAKSRLSPVLSPEEREALALAM--------------LRDVLAALRA 43 (217)
T ss_dssp EEEEE---TT-TTGGGTTTS-HHHHHHHHHHH--------------HHHHHHHHHH
T ss_pred eEEEEcCCCCccccccCccCCHHHHHHHHHHH--------------HHHHHHHHHh
Confidence 46788865 3334789999999988 7888888755
No 22
>PRK02496 adk adenylate kinase; Provisional
Probab=30.81 E-value=44 Score=24.81 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=23.8
Q ss_pred chhcCCCCCCcccHHHHhhhcC----ceeeEeecceee
Q 039077 102 FRQIGEPLPENVTMKDVIDSLP----KKVLFLFASSCT 135 (149)
Q Consensus 102 f~qIGe~LPd~VTLkdVi~sLP----keVFeidd~~~~ 135 (149)
+..-|+.+|+++..+-+-+.|. +..|=||+|-.+
T Consensus 53 ~~~~g~~~~~~~~~~~l~~~l~~~~~~~g~vldGfPr~ 90 (184)
T PRK02496 53 YMDKGELVPDQLVLDLVQERLQQPDAANGWILDGFPRK 90 (184)
T ss_pred HHHCCCccCHHHHHHHHHHHHhCcCccCCEEEeCCCCC
Confidence 4456899999988776665553 246888888544
No 23
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=30.74 E-value=31 Score=24.87 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=21.1
Q ss_pred hcCCCCCCcccHHHHhhhc----CceeeEeecceeecc
Q 039077 104 QIGEPLPENVTMKDVIDSL----PKKVLFLFASSCTLN 137 (149)
Q Consensus 104 qIGe~LPd~VTLkdVi~sL----PkeVFeidd~~~~~~ 137 (149)
.-|+.+||+++.+=|-+.| ...-|=||+|-.|..
T Consensus 50 ~~g~~vp~~~v~~ll~~~l~~~~~~~g~ildGfPrt~~ 87 (151)
T PF00406_consen 50 DNGELVPDELVIELLKERLEQPPCNRGFILDGFPRTLE 87 (151)
T ss_dssp HTTSS--HHHHHHHHHHHHHSGGTTTEEEEESB-SSHH
T ss_pred HhhccchHHHHHHHHHHHHhhhcccceeeeeeccccHH
Confidence 4599999999875443332 456788888877764
No 24
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=29.02 E-value=27 Score=31.55 Aligned_cols=37 Identities=27% Similarity=0.547 Sum_probs=26.1
Q ss_pred CHHHHHHHHHhhCchh---cCCCCCCc-c-cHHHHhhhcCce
Q 039077 89 SADCRKQIAESYGFRQ---IGEPLPEN-V-TMKDVIDSLPKK 125 (149)
Q Consensus 89 s~e~R~qlAe~yGf~q---IGe~LPd~-V-TLkdVi~sLPke 125 (149)
+-++|.+|+++||+.+ .|.==+++ + -++++|+.|.++
T Consensus 175 ~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~ 216 (374)
T TIGR01209 175 PVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKE 216 (374)
T ss_pred CHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhc
Confidence 4689999999999976 33311233 3 477888888876
No 25
>PLN02459 probable adenylate kinase
Probab=28.64 E-value=47 Score=28.27 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=26.4
Q ss_pred hhcCCCCCCcccHHHHhhhc------CceeeEeecceeecc
Q 039077 103 RQIGEPLPENVTMKDVIDSL------PKKVLFLFASSCTLN 137 (149)
Q Consensus 103 ~qIGe~LPd~VTLkdVi~sL------PkeVFeidd~~~~~~ 137 (149)
-.-|+-+||.++.+=|.+.| .+..|=||+|--|.+
T Consensus 82 ~~~G~lVPdeiv~~ll~~~l~~~~~~~~~g~iLDGFPRt~~ 122 (261)
T PLN02459 82 VNQGKLVPDEIIFSLLSKRLEAGEEEGESGFILDGFPRTVR 122 (261)
T ss_pred HHcCCccCHHHHHHHHHHHHhcccccCCceEEEeCCCCCHH
Confidence 55699999999987555544 357799999977765
No 26
>KOG3317 consensus Translocon-associated complex TRAP, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.05 E-value=17 Score=30.51 Aligned_cols=36 Identities=22% Similarity=0.462 Sum_probs=30.4
Q ss_pred HHHHhhCchhcCCCCCCcccHHHHhhhcCceeeEeecc
Q 039077 95 QIAESYGFRQIGEPLPENVTMKDVIDSLPKKVLFLFAS 132 (149)
Q Consensus 95 qlAe~yGf~qIGe~LPd~VTLkdVi~sLPkeVFeidd~ 132 (149)
.++=+|+---+|..=--+|||.| +|.|++-|||=..
T Consensus 43 d~~leY~IyNvGsspAldVtLsD--~Sfpt~~FeIvkG 78 (188)
T KOG3317|consen 43 DVSLEYDIYNVGSSPALDVTLSD--NSFPTKTFEIVKG 78 (188)
T ss_pred eeEEEEeeEEcCCCcceeEEecC--CCCCccceeeecc
Confidence 34557888889998888999999 9999999998543
No 27
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=27.87 E-value=80 Score=21.23 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=27.4
Q ss_pred eecCCCCCCCHHHHHHHHHhhCc-----hh--c--CCCCCCcccHHHH
Q 039077 80 VPVAPPSEDSADCRKQIAESYGF-----RQ--I--GEPLPENVTMKDV 118 (149)
Q Consensus 80 vPVappp~Ds~e~R~qlAe~yGf-----~q--I--Ge~LPd~VTLkdV 118 (149)
+.|. +...-+|-++++++..|+ +- | |+.|.|+-||.|.
T Consensus 17 ~~v~-~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~ 63 (80)
T cd01792 17 VSLR-DSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQ 63 (80)
T ss_pred EEcC-CCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHc
Confidence 4443 344567888899998886 33 4 8999999888774
No 28
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=27.70 E-value=64 Score=22.58 Aligned_cols=24 Identities=33% Similarity=0.648 Sum_probs=19.7
Q ss_pred CHHHHHHHHHhhCchhcCCCCCCcccHHH
Q 039077 89 SADCRKQIAESYGFRQIGEPLPENVTMKD 117 (149)
Q Consensus 89 s~e~R~qlAe~yGf~qIGe~LPd~VTLkd 117 (149)
-+.|.+.|||+-| +++|+++|--+
T Consensus 20 Q~syL~tL~e~Ag-----e~~~~~Ltkae 43 (57)
T PF11272_consen 20 QASYLKTLSEEAG-----EPFPDDLTKAE 43 (57)
T ss_pred HHHHHHHHHHHhC-----CCCCCcccHHH
Confidence 3578899999988 99999998543
No 29
>PF11869 DUF3389: Protein of unknown function (DUF3389); InterPro: IPR021811 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=27.42 E-value=52 Score=24.13 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.8
Q ss_pred CCCCCHHHHHHHHHhhCc
Q 039077 85 PSEDSADCRKQIAESYGF 102 (149)
Q Consensus 85 pp~Ds~e~R~qlAe~yGf 102 (149)
--+|++|+-.+||+++|-
T Consensus 55 ikLD~eeQL~~ia~~lGi 72 (75)
T PF11869_consen 55 IKLDNEEQLQAIAEELGI 72 (75)
T ss_pred EEcCCHHHHHHHHHHhCc
Confidence 357999999999999995
No 30
>PRK14528 adenylate kinase; Provisional
Probab=26.11 E-value=55 Score=25.06 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=21.5
Q ss_pred chhcCCCCCCcccHHHHhhh---cC-ceeeEeecceee
Q 039077 102 FRQIGEPLPENVTMKDVIDS---LP-KKVLFLFASSCT 135 (149)
Q Consensus 102 f~qIGe~LPd~VTLkdVi~s---LP-keVFeidd~~~~ 135 (149)
|-.-|+.+||.++..-+-+. .+ ...|=||+|-.+
T Consensus 53 ~~~~g~lvp~~~~~~~~~~~l~~~~~~~g~viDG~Pr~ 90 (186)
T PRK14528 53 YMDAGDLVPDSVVIGIIKDRIREADCKNGFLLDGFPRT 90 (186)
T ss_pred HHhCCCccCHHHHHHHHHHHHhCcCccCcEEEeCCCCC
Confidence 45568889999765544333 32 345888888554
No 31
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=24.81 E-value=23 Score=27.18 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=19.5
Q ss_pred CCcccHHHHhhhcCc-----eeeEeecce
Q 039077 110 PENVTMKDVIDSLPK-----KVLFLFASS 133 (149)
Q Consensus 110 Pd~VTLkdVi~sLPk-----eVFeidd~~ 133 (149)
|+++||-|||..+-. ++|+.++..
T Consensus 71 ~~~Isl~dVv~ave~~~~~~~c~~~~~~~ 99 (150)
T COG1959 71 PEEITLGDVVRALEGPLALVECFSITNNE 99 (150)
T ss_pred hHHCcHHHHHHHhcCCCCccccCCCCCCC
Confidence 899999999998855 677777654
No 32
>PRK15183 Vi polysaccharide biosynthesis protein TviA; Provisional
Probab=23.81 E-value=52 Score=26.39 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhCchhcC-CCCCCcccH
Q 039077 90 ADCRKQIAESYGFRQIG-EPLPENVTM 115 (149)
Q Consensus 90 ~e~R~qlAe~yGf~qIG-e~LPd~VTL 115 (149)
-.-||+||-++|-|--- --|||.|||
T Consensus 116 yrwrke~a~kfgvr~prylllpdsvtl 142 (143)
T PRK15183 116 YRWRKELAVKFGVREPRYLLLPDSVTL 142 (143)
T ss_pred HHHHHHHHHHhcCCCCceEecCccccc
Confidence 45689999999976321 128999987
No 33
>PRK14530 adenylate kinase; Provisional
Probab=23.28 E-value=1.2e+02 Score=23.43 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=19.2
Q ss_pred hcCCCCCCcccHHHHhhhcC-ceeeEeecceee
Q 039077 104 QIGEPLPENVTMKDVIDSLP-KKVLFLFASSCT 135 (149)
Q Consensus 104 qIGe~LPd~VTLkdVi~sLP-keVFeidd~~~~ 135 (149)
.-|+.+||.+..+-+-+-|. .+-|=||++..+
T Consensus 61 ~~g~~~~d~~~~~~l~~~l~~~~~~IldG~pr~ 93 (215)
T PRK14530 61 DAGELVPDAVVNEIVEEALSDADGFVLDGYPRN 93 (215)
T ss_pred HcCCCCCHHHHHHHHHHHHhcCCCEEEcCCCCC
Confidence 45778888765443323232 356777887775
No 34
>PRK07757 acetyltransferase; Provisional
Probab=23.14 E-value=40 Score=23.67 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=12.0
Q ss_pred HHHHhhCchhcCC
Q 039077 95 QIAESYGFRQIGE 107 (149)
Q Consensus 95 qlAe~yGf~qIGe 107 (149)
++.+++||+.+|.
T Consensus 110 ~~Y~k~GF~~~~~ 122 (152)
T PRK07757 110 EFFEKLGFREVDK 122 (152)
T ss_pred HHHHHCCCEEccc
Confidence 6999999999987
No 35
>PF13808 DDE_Tnp_1_assoc: DDE_Tnp_1-associated
Probab=22.85 E-value=52 Score=23.09 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=25.9
Q ss_pred HHHHHHHhhCchhcCCCCCCcccHHHHhhhcCceeeE
Q 039077 92 CRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVLF 128 (149)
Q Consensus 92 ~R~qlAe~yGf~qIGe~LPd~VTLkdVi~sLPkeVFe 128 (149)
....|.+.+|+ -+.+|..-|++.|+..+..+.|+
T Consensus 49 ~~~~l~~~l~~---~~~~PS~~Ti~rvl~~ld~~~l~ 82 (90)
T PF13808_consen 49 HEEWLRKRLGL---PRGVPSHDTIRRVLSRLDPEALE 82 (90)
T ss_pred hHHHHHHhcCC---CCCCCcHHHHHHHHHHCCHHHHH
Confidence 34556666777 23399999999999999888764
No 36
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=22.82 E-value=44 Score=24.48 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=23.2
Q ss_pred HHHHHHHhhCchhcCCCCCCcccHHHHhhhc
Q 039077 92 CRKQIAESYGFRQIGEPLPENVTMKDVIDSL 122 (149)
Q Consensus 92 ~R~qlAe~yGf~qIGe~LPd~VTLkdVi~sL 122 (149)
-....|++.|....-..||+++|-.++++.+
T Consensus 49 ~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i 79 (117)
T PF00763_consen 49 SKQKAAEKLGIEFELIELPEDISEEELLELI 79 (117)
T ss_dssp HHHHHHHHHT-EEEEEEE-TTSSHHHHHHHH
T ss_pred HHHHHHHHcCCceEEEECCCCcCHHHHHHHH
Confidence 3456789999999889999999988887654
No 37
>PRK14527 adenylate kinase; Provisional
Probab=22.61 E-value=73 Score=24.01 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=21.4
Q ss_pred hhcCCCCCCcccHHHHhh---hcCceeeEeecceee
Q 039077 103 RQIGEPLPENVTMKDVID---SLPKKVLFLFASSCT 135 (149)
Q Consensus 103 ~qIGe~LPd~VTLkdVi~---sLPkeVFeidd~~~~ 135 (149)
..-|+.+|+.+..+-+-+ ..+..-|=||+|-.+
T Consensus 59 ~~~g~~~p~~~~~~l~~~~l~~~~~~~~VlDGfpr~ 94 (191)
T PRK14527 59 MEAGDLVPDELILALIRDELAGMEPVRVIFDGFPRT 94 (191)
T ss_pred HHcCCCCcHHHHHHHHHHHHhcCCCCcEEEcCCCCC
Confidence 445888999876554443 334456778888665
No 38
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=22.08 E-value=38 Score=21.73 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=19.0
Q ss_pred HHHhhCchhcCCCCCCcccHHHHhhhcC
Q 039077 96 IAESYGFRQIGEPLPENVTMKDVIDSLP 123 (149)
Q Consensus 96 lAe~yGf~qIGe~LPd~VTLkdVi~sLP 123 (149)
+++-.| ..-..++++.|++|+++.|-
T Consensus 7 ~~~~~g--~~~~~~~~~~tv~~ll~~l~ 32 (77)
T PF02597_consen 7 LREIAG--EEEIEVPEGSTVRDLLEALA 32 (77)
T ss_dssp HHHHHT--EEEEEESSTSBHHHHHHHHC
T ss_pred HHHHhC--CeEEecCCCCcHHHHHHHHH
Confidence 455556 45567889999999998773
No 39
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=21.79 E-value=83 Score=22.86 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=28.9
Q ss_pred chhhhhhhccccccccccCCCcceeeEEEeecC---CCCCCCHHHHHHHHHh-hCch
Q 039077 51 KWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVA---PPSEDSADCRKQIAES-YGFR 103 (149)
Q Consensus 51 k~~~li~Kg~~~~~~~~~~rr~~~vqAVavPVa---ppp~Ds~e~R~qlAe~-yGf~ 103 (149)
.|+..+.+.+..-..+...-+...++-++++.. ..+.|+.|+-++.+++ +|+.
T Consensus 32 s~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~ 88 (153)
T TIGR02540 32 SECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVT 88 (153)
T ss_pred CCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCC
Confidence 566666555532222222222334556666642 2345778888888875 6753
No 40
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=21.57 E-value=70 Score=23.39 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=19.6
Q ss_pred CCCCCCcccHHHHhhhcC----ceeeEeecceee
Q 039077 106 GEPLPENVTMKDVIDSLP----KKVLFLFASSCT 135 (149)
Q Consensus 106 Ge~LPd~VTLkdVi~sLP----keVFeidd~~~~ 135 (149)
|+.+|++++.+-+-+.|- ..-|-||+|-.+
T Consensus 55 g~~~~~~~~~~l~~~~l~~~~~~~~~vldg~Pr~ 88 (194)
T cd01428 55 GKLVPDEIVIKLLKERLKKPDCKKGFILDGFPRT 88 (194)
T ss_pred CCccCHHHHHHHHHHHHhcccccCCEEEeCCCCC
Confidence 788888877655544443 346778887554
No 41
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=21.49 E-value=2.8e+02 Score=20.89 Aligned_cols=57 Identities=12% Similarity=0.025 Sum_probs=34.8
Q ss_pred eEEEeecCCCCCCCHHHHHHHHHhhCchhcCCCCC-CcccHHHHhhhcCceeeEeecc
Q 039077 76 QAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLP-ENVTMKDVIDSLPKKVLFLFAS 132 (149)
Q Consensus 76 qAVavPVappp~Ds~e~R~qlAe~yGf~qIGe~LP-d~VTLkdVi~sLPkeVFeidd~ 132 (149)
+.+.+=..-.+.|+.++-.+.+++.|-+.++--+- .|..==.-|-+=|..||.++||
T Consensus 108 kv~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~~~~~~eL~~ias~p~~vf~v~~f 165 (165)
T cd01481 108 QFLVLITGGKSQDDVERPAVALKRAGIVPFAIGARNADLAELQQIAFDPSFVFQVSDF 165 (165)
T ss_pred eEEEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCCcCCHHHHHHHhCCCccEEEecCC
Confidence 34444223355577777788889999876543222 2322223356678999999987
No 42
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.44 E-value=65 Score=28.11 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=25.6
Q ss_pred HHHHHHHHhhCchhcCCCCCCcccHHHHhhhc
Q 039077 91 DCRKQIAESYGFRQIGEPLPENVTMKDVIDSL 122 (149)
Q Consensus 91 e~R~qlAe~yGf~qIGe~LPd~VTLkdVi~sL 122 (149)
+.....||+.|+...-..||+++|-.|+++.+
T Consensus 52 ~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I 83 (301)
T PRK14194 52 RNKILRAEEAGIRSLEHRLPADTSQARLLALI 83 (301)
T ss_pred HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 33456899999999999999999977776543
No 43
>cd02417 Peptidase_C39_likeA A sub-family of peptidase C39 which contains Cyclolysin and Hemolysin processing peptidases. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this
Probab=21.30 E-value=1.1e+02 Score=20.76 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHhhCchhcCCCCCCcccHHHHhhhcCceee
Q 039077 88 DSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127 (149)
Q Consensus 88 Ds~e~R~qlAe~yGf~qIGe~LPd~VTLkdVi~sLPkeVF 127 (149)
-+...-.++|+++||+.-...++-+ -|+.+ ++|-=+|
T Consensus 39 ~~~~~l~~~a~~~Gl~~~~~~~~~~-~l~~~--~lP~I~~ 75 (121)
T cd02417 39 FNSTELLLAAKSLGLKAKAVRQPVE-RLARL--PLPALAW 75 (121)
T ss_pred CCHHHHHHHHHHcCCeeEEEecCHH-HhccC--CCCEEEE
Confidence 3677888999999999988887642 23333 5676666
No 44
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=21.09 E-value=64 Score=21.59 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=17.8
Q ss_pred HHHHhhCchhcCCCCCCcccHHHHhhhc
Q 039077 95 QIAESYGFRQIGEPLPENVTMKDVIDSL 122 (149)
Q Consensus 95 qlAe~yGf~qIGe~LPd~VTLkdVi~sL 122 (149)
+++|..|-...=-++|++.|+.|+++.|
T Consensus 11 ~~re~~g~~~~~~~~~~~~tv~~L~~~l 38 (82)
T PLN02799 11 RARELTGVSDMTLELPAGSTTADCLAEL 38 (82)
T ss_pred HHHHHhCCCeEEEECCCCCcHHHHHHHH
Confidence 4455555222222578888998888887
No 45
>PF12812 PDZ_1: PDZ-like domain
Probab=20.82 E-value=59 Score=22.74 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=18.6
Q ss_pred hcCCCCCCcccHHHHhhhcCc
Q 039077 104 QIGEPLPENVTMKDVIDSLPK 124 (149)
Q Consensus 104 qIGe~LPd~VTLkdVi~sLPk 124 (149)
.-|+|.||=-++.+||+.+|.
T Consensus 57 Vn~kpt~~Ld~f~~vvk~ipd 77 (78)
T PF12812_consen 57 VNGKPTPDLDDFIKVVKKIPD 77 (78)
T ss_pred ECCcCCcCHHHHHHHHHhCCC
Confidence 458999999999999999985
No 46
>CHL00058 petD cytochrome b6/f complex subunit IV
Probab=20.15 E-value=76 Score=25.71 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=28.4
Q ss_pred CCCCCCHHHHHHHHHhhCchhcCCCC-CCcccHHH
Q 039077 84 PPSEDSADCRKQIAESYGFRQIGEPL-PENVTMKD 117 (149)
Q Consensus 84 ppp~Ds~e~R~qlAe~yGf~qIGe~L-Pd~VTLkd 117 (149)
-|-.+|..-|..||+-+|..-+|||. |+++...+
T Consensus 6 ~~~~~~~~~~~~~~~~~g~~~~G~PfwP~~~l~~~ 40 (160)
T CHL00058 6 KPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIF 40 (160)
T ss_pred CCCCCCHHHHHHHhccCCCCCCCcccCcchHHHHH
Confidence 36778999999999999999999996 76665555
No 47
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair]
Probab=20.02 E-value=68 Score=29.58 Aligned_cols=36 Identities=28% Similarity=0.672 Sum_probs=25.9
Q ss_pred CHHHHHHHHHhhCchhc---CCCCCCc---ccHHHHhhhcCce
Q 039077 89 SADCRKQIAESYGFRQI---GEPLPEN---VTMKDVIDSLPKK 125 (149)
Q Consensus 89 s~e~R~qlAe~yGf~qI---Ge~LPd~---VTLkdVi~sLPke 125 (149)
+-|+|..|||+||+.+. |+ .|.+ --+.+||.-|-||
T Consensus 183 p~eer~~l~ekYgl~~V~~fg~-~~~~e~~eei~eIve~L~ke 224 (382)
T COG1423 183 PVEERLELAEKYGLPHVEIFGE-FPADEAGEEIYEIVERLNKE 224 (382)
T ss_pred CHHHHHHHHHHcCCCceEEeee-echhHhHHHHHHHHHHHhhc
Confidence 47899999999999763 33 2322 2477888888776
Done!