Query 039077
Match_columns 149
No_of_seqs 30 out of 32
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 09:52:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sr0_A Adenylate kinase; phosp 54.5 7.7 0.00026 29.2 2.6 34 103-136 53-87 (206)
2 1kn6_A Prohormone convertase 1 54.3 11 0.00038 26.4 3.2 20 89-108 22-41 (90)
3 3umf_A Adenylate kinase; rossm 52.2 8 0.00027 29.8 2.4 33 105-137 84-121 (217)
4 2q5w_D Molybdopterin convertin 41.4 21 0.0007 22.4 2.7 28 95-122 8-35 (77)
5 2gqb_A Conserved hypothetical 41.2 13 0.00046 28.5 2.1 15 89-103 82-96 (130)
6 3gmt_A Adenylate kinase; ssgci 39.1 13 0.00044 29.4 1.7 32 105-136 63-98 (230)
7 4fd4_A Arylalkylamine N-acetyl 34.8 13 0.00044 25.0 1.0 45 91-140 170-214 (217)
8 3k8u_A Putative ABC transporte 32.1 36 0.0012 23.7 3.0 52 89-144 50-102 (156)
9 4g2e_A Peroxiredoxin; redox pr 30.2 50 0.0017 22.7 3.4 48 51-103 41-88 (157)
10 2kzv_A Uncharacterized protein 28.9 34 0.0012 23.9 2.4 23 99-133 47-69 (92)
11 3po0_A Small archaeal modifier 27.7 22 0.00077 23.0 1.2 28 95-122 10-37 (89)
12 3iz5_n 60S ribosomal protein L 23.7 6.5 0.00022 27.2 -2.1 14 122-135 1-14 (69)
13 1vjk_A Molybdopterin convertin 21.2 41 0.0014 22.4 1.6 27 96-122 20-46 (98)
14 2l32_A Small archaeal modifier 20.8 34 0.0012 22.5 1.1 16 108-123 16-31 (74)
15 1y8x_B Ubiquitin-activating en 20.7 31 0.0011 24.4 0.9 17 108-124 10-26 (98)
16 3zua_A CLD, alpha-hemolysin tr 20.2 74 0.0025 21.7 2.8 35 89-127 47-82 (142)
17 3kij_A Probable glutathione pe 20.2 71 0.0024 22.0 2.7 53 51-103 48-104 (180)
No 1
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=54.54 E-value=7.7 Score=29.25 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=26.2
Q ss_pred hhcCCCCCCcccHHHHhhhcCce-eeEeecceeec
Q 039077 103 RQIGEPLPENVTMKDVIDSLPKK-VLFLFASSCTL 136 (149)
Q Consensus 103 ~qIGe~LPd~VTLkdVi~sLPke-VFeidd~~~~~ 136 (149)
-.-|+-+||+++++=|.+-|.+. -|=+|+|--|+
T Consensus 53 ~~~G~lvpd~iv~~lv~~~l~~~~~~ilDGfPRt~ 87 (206)
T 3sr0_A 53 MERGELVPDDLIIALIEEVFPKHGNVIFDGFPRTV 87 (206)
T ss_dssp HHHTCCCCHHHHHHHHHHHCCSSSCEEEESCCCSH
T ss_pred HhcCCcCCHHHHHHHHHHhhccCCceEecCCchhH
Confidence 45699999999998888877653 47788886654
No 2
>1kn6_A Prohormone convertase 1; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Mus musculus} SCOP: d.58.3.3
Probab=54.29 E-value=11 Score=26.40 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=17.5
Q ss_pred CHHHHHHHHHhhCchhcCCC
Q 039077 89 SADCRKQIAESYGFRQIGEP 108 (149)
Q Consensus 89 s~e~R~qlAe~yGf~qIGe~ 108 (149)
.+|+=.+||+++||.-.|.-
T Consensus 22 g~~~A~~iA~k~GF~nlGqI 41 (90)
T 1kn6_A 22 GQEAASAIAEELGYDLLGQI 41 (90)
T ss_dssp THHHHHHHHHHHTCEECCCC
T ss_pred cHHHHHHHHHHcCcEEeccC
Confidence 46788899999999999984
No 3
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=52.20 E-value=8 Score=29.79 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=23.3
Q ss_pred cCCCCCCcccHHHHhhhc---C--ceeeEeecceeecc
Q 039077 105 IGEPLPENVTMKDVIDSL---P--KKVLFLFASSCTLN 137 (149)
Q Consensus 105 IGe~LPd~VTLkdVi~sL---P--keVFeidd~~~~~~ 137 (149)
-|+-+||+++.+=|.+.| + ..-|=+|+|--|++
T Consensus 84 ~G~lVpde~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~ 121 (217)
T 3umf_A 84 RGELVPLEVVLALLKEAMIKLVDKNCHFLIDGYPRELD 121 (217)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHTTTCSEEEEETBCSSHH
T ss_pred cCCCCCHHHHHHHHHHHHhhccccccCcccccCCCcHH
Confidence 489999999877665543 3 34588999866553
No 4
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=41.42 E-value=21 Score=22.38 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=22.0
Q ss_pred HHHHhhCchhcCCCCCCcccHHHHhhhc
Q 039077 95 QIAESYGFRQIGEPLPENVTMKDVIDSL 122 (149)
Q Consensus 95 qlAe~yGf~qIGe~LPd~VTLkdVi~sL 122 (149)
.|++..|-...=-++|++.|+.|+++.|
T Consensus 8 ~lr~~~g~~~~~~~~~~~~tv~~ll~~l 35 (77)
T 2q5w_D 8 EIKDILQKAQEDIVLEQALTVQQFEDLL 35 (77)
T ss_dssp HHHHHHTCSEEECCCSSCEEHHHHHHHH
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHH
Confidence 4666677766655789999999999987
No 5
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=41.21 E-value=13 Score=28.49 Aligned_cols=15 Identities=33% Similarity=0.660 Sum_probs=14.0
Q ss_pred CHHHHHHHHHhhCch
Q 039077 89 SADCRKQIAESYGFR 103 (149)
Q Consensus 89 s~e~R~qlAe~yGf~ 103 (149)
|=+.||+||+++||.
T Consensus 82 Sl~~RkeLA~eL~~~ 96 (130)
T 2gqb_A 82 SLSARKELAKELGYS 96 (130)
T ss_dssp SHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHhCCC
Confidence 789999999999997
No 6
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=39.09 E-value=13 Score=29.38 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=23.4
Q ss_pred cCCCCCCcccHHHHhhhcC----ceeeEeecceeec
Q 039077 105 IGEPLPENVTMKDVIDSLP----KKVLFLFASSCTL 136 (149)
Q Consensus 105 IGe~LPd~VTLkdVi~sLP----keVFeidd~~~~~ 136 (149)
-|+.+||+++++=|.+-|- +.-|=||+|-+|+
T Consensus 63 ~G~lvpdei~~~ll~~~l~~~~~~~g~ILDGfPRt~ 98 (230)
T 3gmt_A 63 EGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTI 98 (230)
T ss_dssp TTCCCCHHHHHHHHHHHHHSGGGTTCEEEESCCCSH
T ss_pred hccccccHHHHHHHHHHHhCcccCCCeEecCCCCcH
Confidence 4999999998755544442 3468899998875
No 7
>4fd4_A Arylalkylamine N-acetyltransferase like 5B; GNAT; 1.95A {Aedes aegypti}
Probab=34.78 E-value=13 Score=25.01 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=31.5
Q ss_pred HHHHHHHHhhCchhcCCCCCCcccHHHHhhhcCceeeEeecceeecceee
Q 039077 91 DCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVLFLFASSCTLNAYV 140 (149)
Q Consensus 91 e~R~qlAe~yGf~qIGe~LPd~VTLkdVi~sLPkeVFeidd~~~~~~~~~ 140 (149)
+.-.++-|++||+.+|+ +...+..+.-.+.+|...+..=..+.|+
T Consensus 170 ~~a~~~Y~k~GF~~~~~-----~~~~~~~~~~g~~~f~~~~~~~~~~~~~ 214 (217)
T 4fd4_A 170 VFSVKLAEKLGMECISQ-----LALGDYRDEKGEKLFEPLDVHQVIKTCV 214 (217)
T ss_dssp HHHHHHHHHTTCEEEEE-----EEGGGCCCTTCCCCBCCSSSSCEEEEEE
T ss_pred HHHHHHHHHCCCeEEEe-----EeHHHhccCCCceeeCCCCccceeeeee
Confidence 44567899999999996 4455666556778888776655555444
No 8
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=32.14 E-value=36 Score=23.72 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=33.1
Q ss_pred CHHHHHHHHHhhCchhcCCCCCCcc-cHHHHhhhcCceeeEeecceeecceeeEEee
Q 039077 89 SADCRKQIAESYGFRQIGEPLPENV-TMKDVIDSLPKKVLFLFASSCTLNAYVVLLE 144 (149)
Q Consensus 89 s~e~R~qlAe~yGf~qIGe~LPd~V-TLkdVi~sLPkeVFeidd~~~~~~~~~~~~~ 144 (149)
+..+-.++|+++||+.-+-.++-+. .|.++ .+|-=++-.+|. ..+-|||+..
T Consensus 50 s~~~l~~~a~~~Gl~a~~~~~~~~~~~l~~~--~lP~I~~~~~~g--~~~hfvVl~~ 102 (156)
T 3k8u_A 50 TALGIVEAAKKLGFETRSIKADMTLFDYNDL--TYPFIVHVIKGK--RLQHYYVVYG 102 (156)
T ss_dssp CHHHHHHHHHHTTEEEEEEECCGGGGGCTTC--CSCEEEEEEETT--EEEEEEEEEE
T ss_pred CHHHHHHHHHHCCCeeEEEEeehhhhhHhcC--CCCEEEEEEecC--CCcEEEEEEE
Confidence 6778889999999998887765321 23332 567666432332 1457777754
No 9
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=30.22 E-value=50 Score=22.70 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=24.5
Q ss_pred chhhhhhhccccccccccCCCcceeeEEEeecCCCCCCCHHHHHHHHHhhCch
Q 039077 51 KWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFR 103 (149)
Q Consensus 51 k~~~li~Kg~~~~~~~~~~rr~~~vqAVavPVappp~Ds~e~R~qlAe~yGf~ 103 (149)
.|...|.+...+-..+...-+...++-+++. .|+.+.-++.++++|+.
T Consensus 41 ~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs-----~d~~~~~~~~~~~~~~~ 88 (157)
T 4g2e_A 41 AFTQVCTKEMCTFRDSMAKFNQVNAVVLGIS-----VDPPFSNKAFKEHNKLN 88 (157)
T ss_dssp TTCCC------CCSCGGGGGGGCSSEEEEEE-----SSCHHHHHHHHHHTTCC
T ss_pred CCCCccccchhhcccccccccccCceEeeec-----ccchhHHHHHHHHcCCc
Confidence 4555554443322222223333445555554 37888888999998863
No 10
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=28.88 E-value=34 Score=23.87 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=17.8
Q ss_pred hhCchhcCCCCCCcccHHHHhhhcCceeeEeecce
Q 039077 99 SYGFRQIGEPLPENVTMKDVIDSLPKKVLFLFASS 133 (149)
Q Consensus 99 ~yGf~qIGe~LPd~VTLkdVi~sLPkeVFeidd~~ 133 (149)
.|||+. |.|+|++++ .|||....
T Consensus 47 nYGy~k----------Ls~Li~~~~--~fe~~~~~ 69 (92)
T 2kzv_A 47 NWGHGR----------LSQMVKKLD--FLTVQESR 69 (92)
T ss_dssp TTCSSH----------HHHHHHTCT--TEEEEEEE
T ss_pred ccCccc----------HHHHHHhcC--cEEEEEcC
Confidence 588875 899999965 69987543
No 11
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=27.70 E-value=22 Score=22.95 Aligned_cols=28 Identities=29% Similarity=0.448 Sum_probs=19.5
Q ss_pred HHHHhhCchhcCCCCCCcccHHHHhhhc
Q 039077 95 QIAESYGFRQIGEPLPENVTMKDVIDSL 122 (149)
Q Consensus 95 qlAe~yGf~qIGe~LPd~VTLkdVi~sL 122 (149)
.|++..|-.+.=-++|++.|+.|+++.|
T Consensus 10 ~lre~~g~~~~~~~~~~~~Tv~~ll~~L 37 (89)
T 3po0_A 10 DLAEVAGSRTVRVDVDGDATVGDALDAL 37 (89)
T ss_dssp HHHHHHTCSEEEEECCTTCBHHHHHHHH
T ss_pred HHHHHhCCCeEEEECCCCCcHHHHHHHH
Confidence 4555666544444678888999998877
No 12
>3iz5_n 60S ribosomal protein L38 (L38E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_n
Probab=23.67 E-value=6.5 Score=27.17 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=11.2
Q ss_pred cCceeeEeecceee
Q 039077 122 LPKKVLFLFASSCT 135 (149)
Q Consensus 122 LPkeVFeidd~~~~ 135 (149)
||+|++||.||--+
T Consensus 1 MPkei~~ik~Fl~~ 14 (69)
T 3iz5_n 1 MPKQIHEIKDFLLT 14 (69)
T ss_dssp CCTHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHH
Confidence 79999999887543
No 13
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=21.24 E-value=41 Score=22.42 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=16.3
Q ss_pred HHHhhCchhcCCCCCCcccHHHHhhhc
Q 039077 96 IAESYGFRQIGEPLPENVTMKDVIDSL 122 (149)
Q Consensus 96 lAe~yGf~qIGe~LPd~VTLkdVi~sL 122 (149)
|.|..|-.+.=-++|++.|+.|+++.|
T Consensus 20 lre~~g~~~~~~e~~~~~Tv~~Ll~~L 46 (98)
T 1vjk_A 20 FRQLAGVDEEEIELPEGARVRDLIEEI 46 (98)
T ss_dssp HHHHHSSSEEEEEECTTCBHHHHHHHH
T ss_pred HHHHhCCCeEEEECCCCCCHHHHHHHH
Confidence 444455444333557777888877776
No 14
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=20.81 E-value=34 Score=22.50 Aligned_cols=16 Identities=13% Similarity=0.343 Sum_probs=14.5
Q ss_pred CCCCcccHHHHhhhcC
Q 039077 108 PLPENVTMKDVIDSLP 123 (149)
Q Consensus 108 ~LPd~VTLkdVi~sLP 123 (149)
++|++.|+.|+++.|-
T Consensus 16 ev~~g~Tv~dLL~~Lg 31 (74)
T 2l32_A 16 AVDDDGTYADLVRAVD 31 (74)
T ss_dssp ECSTTCSHHHHHHTTC
T ss_pred EcCCCCcHHHHHHHcC
Confidence 6999999999999873
No 15
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=20.66 E-value=31 Score=24.40 Aligned_cols=17 Identities=18% Similarity=0.466 Sum_probs=14.1
Q ss_pred CCCCcccHHHHhhhcCc
Q 039077 108 PLPENVTMKDVIDSLPK 124 (149)
Q Consensus 108 ~LPd~VTLkdVi~sLPk 124 (149)
++.++.||+|+|+.|=.
T Consensus 10 ~v~~~~TL~~lid~L~~ 26 (98)
T 1y8x_B 10 QFSPSAKLQEVLDYLTN 26 (98)
T ss_dssp ECCTTCBHHHHHHHHHH
T ss_pred EECCchhHHHHHHHHHh
Confidence 46789999999999844
No 16
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=20.22 E-value=74 Score=21.73 Aligned_cols=35 Identities=17% Similarity=0.050 Sum_probs=24.6
Q ss_pred CHHHHHHHHHhhCchhcCCCCCCcccHHHHhh-hcCceee
Q 039077 89 SADCRKQIAESYGFRQIGEPLPENVTMKDVID-SLPKKVL 127 (149)
Q Consensus 89 s~e~R~qlAe~yGf~qIGe~LPd~VTLkdVi~-sLPkeVF 127 (149)
+..+-.++|+++||+.-+-.++ ++++-+ .+|-=++
T Consensus 47 s~~~l~~aa~~~Gl~a~~~~~~----~~~L~~l~lP~Il~ 82 (142)
T 3zua_A 47 GLTSWLLAAKSLELKVKQVKKT----IDRLNFISLPALVW 82 (142)
T ss_dssp CHHHHHHHHHTTTEEEEEEECC----HHHHTTSSSSEEEC
T ss_pred CHHHHHHHHHHCCCeeEEeecC----HHHHhcCCCCEEEE
Confidence 6778899999999998887653 445433 4555443
No 17
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=20.17 E-value=71 Score=22.02 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=31.3
Q ss_pred chhhhhhhccccccccccCCCcceeeEEEeecCC---CCCCCHHHHHHHHHh-hCch
Q 039077 51 KWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAP---PSEDSADCRKQIAES-YGFR 103 (149)
Q Consensus 51 k~~~li~Kg~~~~~~~~~~rr~~~vqAVavPVap---pp~Ds~e~R~qlAe~-yGf~ 103 (149)
.|+..|.+....-..+...-+.+.++-+++++.+ ...|+.++-++.+++ ||+.
T Consensus 48 twC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~ 104 (180)
T 3kij_A 48 SDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVT 104 (180)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCC
T ss_pred cCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCC
Confidence 6776664444322222222223347777787754 234688888889998 8865
Done!