Query 039079
Match_columns 123
No_of_seqs 95 out of 97
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 06:06:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 99.9 6.2E-28 1.4E-32 178.9 4.6 71 32-107 43-114 (118)
2 PF05617 Prolamin_like: Prolam 99.8 4.5E-20 9.7E-25 121.4 3.7 64 36-100 1-70 (70)
3 PLN00214 putative protein; Pro 71.6 3 6.6E-05 31.4 2.0 50 45-96 45-99 (115)
4 cd04660 nsLTP_like nsLTP_like: 38.6 13 0.00028 24.5 0.4 35 42-80 6-42 (73)
5 smart00499 AAI Plant lipid tra 38.5 14 0.0003 22.8 0.6 39 37-80 1-43 (79)
6 PF09585 Lin0512_fam: Conserve 34.5 17 0.00036 27.2 0.6 29 62-90 18-47 (113)
7 cd01960 nsLTP1 nsLTP1: Non-spe 32.5 29 0.00064 23.3 1.5 61 36-101 2-76 (89)
8 cd00010 AAI_LTSS AAI_LTSS: Alp 27.9 49 0.0011 20.5 1.8 27 56-82 8-38 (63)
9 cd03727 SOCS_ASB8 SOCS (suppre 20.6 59 0.0013 20.5 1.1 32 63-98 7-39 (43)
10 PF14368 LTP_2: Probable lipid 17.2 45 0.00098 21.9 0.1 64 34-102 19-90 (96)
No 1
>PLN00213 predicted protein; Provisional
Probab=99.94 E-value=6.2e-28 Score=178.87 Aligned_cols=71 Identities=25% Similarity=0.546 Sum_probs=65.9
Q ss_pred CCchhhhhhcccCcchHHHHHHHHhhCccc-cCccchHHHHhhhcCcccccccCCCCCchhhhhhhcccccCCCCCC
Q 039079 32 GGITKCWNSLMELKSCSNEIGIFFLNSQAD-IDHDCCRAIDIIARNCWPAMLTSLGFTAEEGNILRGYCDASSVPSL 107 (123)
Q Consensus 32 ~~l~kCWsSl~~v~gC~~EI~~sflnGe~~-LGp~CCkAI~~I~~~CWP~mfps~pFt~~e~~iLKg~C~~~~~~sP 107 (123)
.|+.||||||++++||+.||++++++|||+ ||++|||||++++ +|||+| |.+||+++ +||++|++++..+|
T Consensus 43 pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aCCKAf~~~d-nCwP~~-P~~P~fPp---~LK~~Cs~i~~~~~ 114 (118)
T PLN00213 43 PDITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPACCKAFLDAD-NCIPKI-PFIPFFPP---MLKEQCSRVAGATP 114 (118)
T ss_pred ccHHHHHHHHcCCcchHHHHHHHHHhchhcccchHHHHHHHhhh-ccccCC-cCCCccch---HHHHHHhcccCCCC
Confidence 488999999999999999999999999997 9999999999966 999995 99999999 99999999974444
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.79 E-value=4.5e-20 Score=121.37 Aligned_cols=64 Identities=31% Similarity=0.666 Sum_probs=56.7
Q ss_pred hhhhhcccCcchHHHHHHHHhhCccc-cCccchHHHHhhhcCcccc---cccCCCCCch--hhhhhhcccc
Q 039079 36 KCWNSLMELKSCSNEIGIFFLNSQAD-IDHDCCRAIDIIARNCWPA---MLTSLGFTAE--EGNILRGYCD 100 (123)
Q Consensus 36 kCWsSl~~v~gC~~EI~~sflnGe~~-LGp~CCkAI~~I~~~CWP~---mfps~pFt~~--e~~iLKg~C~ 100 (123)
|||++++++++|+.||+.+|++|+.. ||++||+||+.++++|||. ||+..||+++ + +.|+++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r-~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLR-DLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhH-HHHHhhcC
Confidence 69999999999999999999999854 9999999999999999999 6666666655 4 59999996
No 3
>PLN00214 putative protein; Provisional
Probab=71.63 E-value=3 Score=31.38 Aligned_cols=50 Identities=18% Similarity=0.359 Sum_probs=36.7
Q ss_pred cchHHHHHHHHh-hCccccCccchHHHHhhhcCc---cccccc-CCCCCchhhhhhh
Q 039079 45 KSCSNEIGIFFL-NSQADIDHDCCRAIDIIARNC---WPAMLT-SLGFTAEEGNILR 96 (123)
Q Consensus 45 ~gC~~EI~~sfl-nGe~~LGp~CCkAI~~I~~~C---WP~mfp-s~pFt~~e~~iLK 96 (123)
+-|..||+..++ ||. ...+||+-+...+.+| |=+++. .+.|...|...|+
T Consensus 45 ~KCa~EI~a~i~~N~t--~s~~CC~~LVk~GK~CH~~LiK~i~~~p~~k~~as~~l~ 99 (115)
T PLN00214 45 PKCALDIIAVVFENGT--LIDPCCNDLVKEGKVCHDTLIKYIADKPMLIAHETEYLK 99 (115)
T ss_pred HhhHHHHHHHHHcCCC--CchHHHHHHHHHhhHHHHHHHHHHHcchhhhhhHHHhhc
Confidence 559999999999 665 5899999999999999 434444 4555555554443
No 4
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=38.59 E-value=13 Score=24.51 Aligned_cols=35 Identities=17% Similarity=0.409 Sum_probs=21.8
Q ss_pred ccCcchHHHHHHHHhhCc--cccCccchHHHHhhhcCcccc
Q 039079 42 MELKSCSNEIGIFFLNSQ--ADIDHDCCRAIDIIARNCWPA 80 (123)
Q Consensus 42 ~~v~gC~~EI~~sflnGe--~~LGp~CCkAI~~I~~~CWP~ 80 (123)
..+..|.. ++..|. ..-+.+||.+|+.++..|.=.
T Consensus 6 ~~L~~C~~----yl~~~~~~~~Ps~~CC~~vk~~~~~C~C~ 42 (73)
T cd04660 6 DLLAECQP----YVTGPNPPPPPSRECCAALRRADLPCLCR 42 (73)
T ss_pred HHHHHHHH----HHcCCCCCCCCCHHHHHHHHcCCcCCEee
Confidence 34445663 334444 236778999999887677533
No 5
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=38.55 E-value=14 Score=22.77 Aligned_cols=39 Identities=23% Similarity=0.540 Sum_probs=24.7
Q ss_pred hhhhcccCcchHHHHHHHHhhCc---cccCccchHHHHhh-hcCcccc
Q 039079 37 CWNSLMELKSCSNEIGIFFLNSQ---ADIDHDCCRAIDII-ARNCWPA 80 (123)
Q Consensus 37 CWsSl~~v~gC~~EI~~sflnGe---~~LGp~CCkAI~~I-~~~CWP~ 80 (123)
|...+.++.+|..- +++. ......||.++..+ ...|+=.
T Consensus 1 C~~~~~~~~~c~~~-----~~~~~~~~~p~~~CC~~l~~~~~~~C~C~ 43 (79)
T smart00499 1 CGQVLLQLAPCLSY-----LTGGSPGAPPSQQCCSQLRGLNSAQCRCL 43 (79)
T ss_pred ChhhhhhHHhhHHH-----HcCCCCCCCCchHHHHHHHHhcccCCcch
Confidence 34444455556533 3333 33778999999999 8888654
No 6
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=34.46 E-value=17 Score=27.17 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=24.0
Q ss_pred cCccchHHHH-hhhcCcccccccCCCCCch
Q 039079 62 IDHDCCRAID-IIARNCWPAMLTSLGFTAE 90 (123)
Q Consensus 62 LGp~CCkAI~-~I~~~CWP~mfps~pFt~~ 90 (123)
.-+++++|++ .|.++|.|.|+-..|+..+
T Consensus 18 ~TkAA~RAv~DAI~~nslp~l~~~~~~~~~ 47 (113)
T PF09585_consen 18 YTKAAVRAVRDAISHNSLPGLFEILGLDLD 47 (113)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHcCCChH
Confidence 5578899997 7899999999998888443
No 7
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=32.46 E-value=29 Score=23.29 Aligned_cols=61 Identities=20% Similarity=0.485 Sum_probs=35.1
Q ss_pred hhhhhcccCcchHHHHHHHHhhCccc-cCccchHHHHhhhc------------CcccccccCC-CCCchhhhhhhccccc
Q 039079 36 KCWNSLMELKSCSNEIGIFFLNSQAD-IDHDCCRAIDIIAR------------NCWPAMLTSL-GFTAEEGNILRGYCDA 101 (123)
Q Consensus 36 kCWsSl~~v~gC~~EI~~sflnGe~~-LGp~CCkAI~~I~~------------~CWP~mfps~-pFt~~e~~iLKg~C~~ 101 (123)
+|=..+..+..|.. |++|... -++.||.++..+.. .|.-.+.... ++.+.-+.-|=+-|..
T Consensus 2 ~C~~v~~~l~~C~~-----y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v 76 (89)
T cd01960 2 SCGQVTSLLAPCLG-----YLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGV 76 (89)
T ss_pred CHHHHHhhHHhHHH-----HHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhccc
Confidence 35555666667763 3444444 88999999998653 2333333322 2445545556666754
No 8
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=27.94 E-value=49 Score=20.47 Aligned_cols=27 Identities=30% Similarity=0.647 Sum_probs=18.1
Q ss_pred hhCccc-cCccchHHHHhhhc---Ccccccc
Q 039079 56 LNSQAD-IDHDCCRAIDIIAR---NCWPAML 82 (123)
Q Consensus 56 lnGe~~-LGp~CCkAI~~I~~---~CWP~mf 82 (123)
++|... -.+.||.+++.+.+ .|.=..+
T Consensus 8 ~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~ 38 (63)
T cd00010 8 LTGGATAPPSDCCSGLKSVVKSDPKCLCAAL 38 (63)
T ss_pred HcCCCCCCChHHHHHHHHHHhcChhhHHHHH
Confidence 445534 88999999999853 5544433
No 9
>cd03727 SOCS_ASB8 SOCS (suppressors of cytokine signaling) box of ASB8-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Human ASB8 is highly transcribed in skeletal muscle and in lung carcinoma cell lines. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=20.56 E-value=59 Score=20.46 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=21.0
Q ss_pred CccchHHHHhh-hcCcccccccCCCCCchhhhhhhcc
Q 039079 63 DHDCCRAIDII-ARNCWPAMLTSLGFTAEEGNILRGY 98 (123)
Q Consensus 63 Gp~CCkAI~~I-~~~CWP~mfps~pFt~~e~~iLKg~ 98 (123)
-.-|..||+.. +.+|.+...+..|... .||+|
T Consensus 7 q~LcR~aiR~~lg~~~l~~aI~~LpLP~----sLK~Y 39 (43)
T cd03727 7 KALARYAVRRSLGVQYLPEAVKQLPLPR----SVKEY 39 (43)
T ss_pred HHHHHHHHHHHHhhhhHHhhcccCCCCH----HHHHH
Confidence 35688888854 4565566557776543 67776
No 10
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=17.23 E-value=45 Score=21.90 Aligned_cols=64 Identities=22% Similarity=0.460 Sum_probs=31.2
Q ss_pred chhhhhhcccCcchHHHHHHHHhhCccccCccchHHHHhh---hcCcccccccCCC-----CCchhhhhhhcccccC
Q 039079 34 ITKCWNSLMELKSCSNEIGIFFLNSQADIDHDCCRAIDII---ARNCWPAMLTSLG-----FTAEEGNILRGYCDAS 102 (123)
Q Consensus 34 l~kCWsSl~~v~gC~~EI~~sflnGe~~LGp~CCkAI~~I---~~~CWP~mfps~p-----Ft~~e~~iLKg~C~~~ 102 (123)
...|.++++..--|. .+.++...-.+.||.+++.+ +.+|.=.++.+.. +...-+..|=.-|...
T Consensus 19 ~~~c~~~l~~c~~~~-----~~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~~ 90 (96)
T PF14368_consen 19 CCSCANSLLPCCPCL-----CYVTGGPAPSAACCSALKSVVQADPPCLCQLLNSPGAPGFGINVTRALALPAACGVP 90 (96)
T ss_dssp TTB-HCCCCHH--HH-----HHHCC-----HHHHHHHCC----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTSS
T ss_pred cchhHHHHhccccch-----hccCCCCCCCHHHHHHHHHhccCCCCCHHHhcCccccccCCcCHHHHHHHHHHcCCC
Confidence 346755544332222 24556666999999999996 8888766655543 3343333444455433
Done!