Query 039079
Match_columns 123
No_of_seqs 95 out of 97
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 09:54:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c8l_A FTSZ-like protein of un 20.3 26 0.00088 25.5 0.4 27 62-88 22-49 (122)
2 2ebo_A Ebola virus envelope gl 16.2 28 0.00096 23.2 -0.2 7 62-68 48-54 (74)
3 1bwo_A NS-LTP1, nonspecific li 14.0 68 0.0023 21.0 1.3 61 37-102 3-76 (90)
4 3l32_A Phosphoprotein; antipar 13.4 52 0.0018 20.3 0.5 21 22-42 14-34 (45)
5 1ebo_A Ebola virus envelope pr 13.2 38 0.0013 24.7 -0.2 7 62-68 85-91 (131)
6 2rod_B NOXA, noxaa; MCL-1, apo 11.9 31 0.001 19.0 -0.8 19 22-40 5-24 (27)
7 1afh_A Maize nonspecific lipid 11.4 85 0.0029 20.6 1.1 61 37-102 4-78 (93)
8 2wdq_C Succinate dehydrogenase 11.0 77 0.0026 21.9 0.8 15 9-23 2-16 (129)
9 2knp_A Mcocc-1; disulfide-rich 10.7 44 0.0015 19.1 -0.5 12 75-86 17-28 (33)
10 1n89_A Lipid transfer protein; 9.7 1.5E+02 0.0051 18.3 1.8 32 43-80 6-37 (67)
No 1
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=20.34 E-value=26 Score=25.48 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=22.2
Q ss_pred cCccchHHHH-hhhcCcccccccCCCCC
Q 039079 62 IDHDCCRAID-IIARNCWPAMLTSLGFT 88 (123)
Q Consensus 62 LGp~CCkAI~-~I~~~CWP~mfps~pFt 88 (123)
.-+++.+|++ .|.++|.|.|+...|+.
T Consensus 22 ~TkAA~RAvrDAI~~nslp~~~~~~g~~ 49 (122)
T 3c8l_A 22 PTIAASRAVRNAIAHNALPGVWEVAGLS 49 (122)
T ss_dssp HHHHHHHHHHHHHTTCCCSSHHHHHTCS
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHCCCC
Confidence 4467888887 78899999999888874
No 2
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=16.24 E-value=28 Score=23.23 Aligned_cols=7 Identities=29% Similarity=0.767 Sum_probs=6.3
Q ss_pred cCccchH
Q 039079 62 IDHDCCR 68 (123)
Q Consensus 62 LGp~CCk 68 (123)
|||+||-
T Consensus 48 lgpdc~i 54 (74)
T 2ebo_A 48 LGPDCAI 54 (74)
T ss_dssp HGGGGGC
T ss_pred cCCcccc
Confidence 9999994
No 3
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=14.05 E-value=68 Score=21.05 Aligned_cols=61 Identities=11% Similarity=0.400 Sum_probs=35.3
Q ss_pred hhhhcccCcchHHHHHHHHhhCccccCccchHHHHhhhc------------CcccccccCC-CCCchhhhhhhcccccC
Q 039079 37 CWNSLMELKSCSNEIGIFFLNSQADIDHDCCRAIDIIAR------------NCWPAMLTSL-GFTAEEGNILRGYCDAS 102 (123)
Q Consensus 37 CWsSl~~v~gC~~EI~~sflnGe~~LGp~CCkAI~~I~~------------~CWP~mfps~-pFt~~e~~iLKg~C~~~ 102 (123)
|=+.+..+..|..-+ ..|. ...++||.+++.+.. .|.-....+. ++.+.-+.-|=+-|.-.
T Consensus 3 C~~v~~~L~pCl~y~----~~~~-~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~ 76 (90)
T 1bwo_A 3 CGHVDSLVRPCLSYV----QGGP-GPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVN 76 (90)
T ss_dssp HHHHHHHHGGGHHHH----TTCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCC
T ss_pred HHHHHHhhcccHHHH----cCCC-CCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCC
Confidence 444555566676433 3333 377789999998652 4442222332 45666566777777553
No 4
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=13.36 E-value=52 Score=20.29 Aligned_cols=21 Identities=10% Similarity=0.387 Sum_probs=17.6
Q ss_pred cchhhhhhccCCchhhhhhcc
Q 039079 22 YDLATRLEASGGITKCWNSLM 42 (123)
Q Consensus 22 ~~l~arl~~~~~l~kCWsSl~ 42 (123)
.-+..|||.+....|=||...
T Consensus 14 ~qiVrkmKtGe~FfKiWS~~~ 34 (45)
T 3l32_A 14 VQIVRQMRSGERFLKIWSQTV 34 (45)
T ss_dssp HHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHccccHHHHHHHHH
Confidence 347789999999999999864
No 5
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=13.20 E-value=38 Score=24.70 Aligned_cols=7 Identities=29% Similarity=0.638 Sum_probs=6.3
Q ss_pred cCccchH
Q 039079 62 IDHDCCR 68 (123)
Q Consensus 62 LGp~CCk 68 (123)
|||+||-
T Consensus 85 LGPdCcI 91 (131)
T 1ebo_A 85 LGPDCRI 91 (131)
T ss_dssp HGGGGGC
T ss_pred cCCcccc
Confidence 9999994
No 6
>2rod_B NOXA, noxaa; MCL-1, apoptosis, BH3-only, BCL-2, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein; NMR {Mus musculus}
Probab=11.90 E-value=31 Score=19.03 Aligned_cols=19 Identities=26% Similarity=0.676 Sum_probs=13.1
Q ss_pred cchhhhhhccCCchhh-hhh
Q 039079 22 YDLATRLEASGGITKC-WNS 40 (123)
Q Consensus 22 ~~l~arl~~~~~l~kC-WsS 40 (123)
...||+|+.-++-+.| ||+
T Consensus 5 pefaaqlrkigdkvyctwsa 24 (27)
T 2rod_B 5 PEFAAQLRKIGDKVYCTWSA 24 (27)
T ss_dssp THHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHhCCeeEEeecC
Confidence 4578999876666666 543
No 7
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=11.43 E-value=85 Score=20.63 Aligned_cols=61 Identities=16% Similarity=0.419 Sum_probs=34.8
Q ss_pred hhhhcccCcchHHHHHHHHhhCccc-cCccchHHHHhhh----------cCc--ccccccCC-CCCchhhhhhhcccccC
Q 039079 37 CWNSLMELKSCSNEIGIFFLNSQAD-IDHDCCRAIDIIA----------RNC--WPAMLTSL-GFTAEEGNILRGYCDAS 102 (123)
Q Consensus 37 CWsSl~~v~gC~~EI~~sflnGe~~-LGp~CCkAI~~I~----------~~C--WP~mfps~-pFt~~e~~iLKg~C~~~ 102 (123)
|=+.+..+..|..- +.|... -.++||.+++.+. ..| .-...... ++.+.-+.-|=+-|.-.
T Consensus 4 C~~v~~~L~pCl~y-----~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~ 78 (93)
T 1afh_A 4 CGQVASAIAPCISY-----ARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVS 78 (93)
T ss_dssp SHHHHHHHGGGHHH-----HTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred hHHHHHhccCcHHH-----HcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCC
Confidence 44555556667633 344434 6678999999984 234 42222222 45555566777777553
No 8
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=11.01 E-value=77 Score=21.88 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=7.5
Q ss_pred cccccccCCCCCCcc
Q 039079 9 SRNDRLNNNMKPGYD 23 (123)
Q Consensus 9 ~~~~~~~~~~~~~~~ 23 (123)
.+|.|.|||+++..+
T Consensus 2 ~~~~~~~RP~sphl~ 16 (129)
T 2wdq_C 2 IRNVKKQRPVNLDLQ 16 (129)
T ss_dssp ------CCCBCCCGG
T ss_pred CccccccCCCCCCcC
Confidence 467889999998764
No 9
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=10.65 E-value=44 Score=19.15 Aligned_cols=12 Identities=33% Similarity=1.143 Sum_probs=8.8
Q ss_pred cCcccccccCCC
Q 039079 75 RNCWPAMLTSLG 86 (123)
Q Consensus 75 ~~CWP~mfps~p 86 (123)
-.|||.+-|..+
T Consensus 17 crcwptvtpgvg 28 (33)
T 2knp_A 17 CRCWPTVTPGVG 28 (33)
T ss_dssp CCEEECSSTTEE
T ss_pred eeeccccCCCee
Confidence 379999877653
No 10
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=9.67 E-value=1.5e+02 Score=18.32 Aligned_cols=32 Identities=25% Similarity=0.671 Sum_probs=20.2
Q ss_pred cCcchHHHHHHHHhhCccccCccchHHHHhhhcCcccc
Q 039079 43 ELKSCSNEIGIFFLNSQADIDHDCCRAIDIIARNCWPA 80 (123)
Q Consensus 43 ~v~gC~~EI~~sflnGe~~LGp~CCkAI~~I~~~CWP~ 80 (123)
++..|...| ..| ....++||.+++.. ..|.=.
T Consensus 6 ~L~pC~~~v----~~~-~~Ps~~CC~~lk~~-~~ClC~ 37 (67)
T 1n89_A 6 QLAVCASAI----LSG-AKPSGECCGNLRAQ-QGCFCQ 37 (67)
T ss_dssp TTHHHHHHH----TTC-CCCCHHHHHHHHHH-SSHHHH
T ss_pred hcccCHHHH----cCC-CCCCHHHHHhhCCC-CCCCCc
Confidence 344465444 333 34889999999985 667543
Done!