Query 039079
Match_columns 123
No_of_seqs 95 out of 97
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 09:54:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039079.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039079hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nekc_ f.21.2.2 (C:) Succinat 21.0 16 0.0012 23.8 1.1 16 9-24 2-17 (129)
2 d1fk5a_ a.52.1.1 (A:) Plant no 19.4 20 0.0014 22.3 1.3 61 37-102 4-78 (93)
3 d1mida_ a.52.1.1 (A:) Plant no 18.8 21 0.0015 22.1 1.3 61 37-102 3-76 (91)
4 d1k8rb_ d.15.1.5 (B:) Protein 10.4 55 0.004 21.1 1.6 17 41-57 14-30 (95)
5 d1g60a_ c.66.1.11 (A:) Methylt 10.3 51 0.0037 21.7 1.4 26 64-89 10-35 (256)
6 d1hssa_ a.52.1.2 (A:) 0.19 alp 8.1 73 0.0053 21.3 1.5 36 43-79 12-50 (120)
7 d2bsca1 b.2.3.5 (A:1-176) Fimb 5.9 53 0.0038 22.9 -0.2 28 93-120 104-131 (176)
8 d2cqea2 g.66.1.1 (A:429-457) Z 5.6 85 0.0062 16.3 0.6 9 94-102 12-20 (29)
9 d1gv2a2 a.4.1.3 (A:144-190) c- 5.1 1.1E+02 0.008 16.4 0.9 14 85-98 2-15 (47)
10 d1dsqa_ g.40.1.1 (A:) Nucleic 4.0 1.3E+02 0.0098 15.0 0.7 11 56-66 7-18 (26)
No 1
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=20.98 E-value=16 Score=23.77 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=13.6
Q ss_pred cccccccCCCCCCcch
Q 039079 9 SRNDRLNNNMKPGYDL 24 (123)
Q Consensus 9 ~~~~~~~~~~~~~~~l 24 (123)
+||.|.|||++++...
T Consensus 2 ~~~~~~~RP~sPhL~i 17 (129)
T d1nekc_ 2 IRNVKKQRPVNLDLQT 17 (129)
T ss_dssp CTTCCCCCCBCCCGGG
T ss_pred chhcccCCCCCCCcce
Confidence 5899999999998754
No 2
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=19.40 E-value=20 Score=22.31 Aligned_cols=61 Identities=18% Similarity=0.440 Sum_probs=36.1
Q ss_pred hhhhcccCcchHHHHHHHHhhCccc-cCccchHHHHhhhc------------Cccccccc-CCCCCchhhhhhhcccccC
Q 039079 37 CWNSLMELKSCSNEIGIFFLNSQAD-IDHDCCRAIDIIAR------------NCWPAMLT-SLGFTAEEGNILRGYCDAS 102 (123)
Q Consensus 37 CWsSl~~v~gC~~EI~~sflnGe~~-LGp~CCkAI~~I~~------------~CWP~mfp-s~pFt~~e~~iLKg~C~~~ 102 (123)
|=..+..+-.|. .|++|... -++.||.+++.+.. +|.-.... ..|+.+.-+.-|=.-|.-.
T Consensus 4 C~~v~~~l~pCl-----~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~ 78 (93)
T d1fk5a_ 4 CGQVASAIAPCI-----SYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVS 78 (93)
T ss_dssp HHHHHHHHGGGH-----HHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhhhH-----HHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCC
Confidence 444555555565 24566655 78899999998753 22322222 2356666666777788543
No 3
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=18.85 E-value=21 Score=22.15 Aligned_cols=61 Identities=13% Similarity=0.437 Sum_probs=35.6
Q ss_pred hhhhcccCcchHHHHHHHHhhCccccCccchHHHHhhhc------------Cccccccc-CCCCCchhhhhhhcccccC
Q 039079 37 CWNSLMELKSCSNEIGIFFLNSQADIDHDCCRAIDIIAR------------NCWPAMLT-SLGFTAEEGNILRGYCDAS 102 (123)
Q Consensus 37 CWsSl~~v~gC~~EI~~sflnGe~~LGp~CCkAI~~I~~------------~CWP~mfp-s~pFt~~e~~iLKg~C~~~ 102 (123)
|=+.+..+-.|.. |++|.....+.||.+++.+.. +|.-..-. ..++...-+.-|=+-|.-.
T Consensus 3 C~~v~~~l~pCl~-----Yl~g~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~ 76 (91)
T d1mida_ 3 CGQVDSKMKPCLT-----YVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVN 76 (91)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhHH-----HHcCCCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCC
Confidence 4455555556652 455655599999999987753 12322221 2245555566777788544
No 4
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=10.43 E-value=55 Score=21.13 Aligned_cols=17 Identities=6% Similarity=-0.044 Sum_probs=13.2
Q ss_pred cccCcchHHHHHHHHhh
Q 039079 41 LMELKSCSNEIGIFFLN 57 (123)
Q Consensus 41 l~~v~gC~~EI~~sfln 57 (123)
..++.||.+||+.-++.
T Consensus 14 ~vni~gC~~ai~~~~Lk 30 (95)
T d1k8rb_ 14 AVQSRGDYQKTLAIALK 30 (95)
T ss_dssp EEECCSCHHHHHHHHHH
T ss_pred EEEeccCHHHHHHHHHH
Confidence 67899999998766543
No 5
>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}
Probab=10.30 E-value=51 Score=21.67 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=22.9
Q ss_pred ccchHHHHhhhcCcccccccCCCCCc
Q 039079 64 HDCCRAIDIIARNCWPAMLTSLGFTA 89 (123)
Q Consensus 64 p~CCkAI~~I~~~CWP~mfps~pFt~ 89 (123)
-+|.+.+..+.+++.-.++.++||..
T Consensus 10 gDcle~l~~lpd~sVdliitdPPY~~ 35 (256)
T d1g60a_ 10 MNCFDFLDQVENKSVQLAVIDPPYNL 35 (256)
T ss_dssp CCHHHHHHHSCTTCEEEEEECCCCSS
T ss_pred ccHHHHHhhCcCCCcCEEEECCCCCC
Confidence 47899999999999999999999963
No 6
>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=8.10 E-value=73 Score=21.27 Aligned_cols=36 Identities=22% Similarity=0.499 Sum_probs=24.8
Q ss_pred cCcchHHHHHHHHhhCcc-c--cCccchHHHHhhhcCccc
Q 039079 43 ELKSCSNEIGIFFLNSQA-D--IDHDCCRAIDIIARNCWP 79 (123)
Q Consensus 43 ~v~gC~~EI~~sflnGe~-~--LGp~CCkAI~~I~~~CWP 79 (123)
-+++|-..+.+- -.|-. . +...||+-+..|.+.|+=
T Consensus 12 pL~~CR~yv~~q-~~G~~~~~~~k~~CC~eLa~i~~~CRC 50 (120)
T d1hssa_ 12 ALPACRPLLRLQ-CNGSQVPEAVLRDCCQQLAHISEWCRC 50 (120)
T ss_dssp CCTTHHHHHHHH-TTTCCCCHHHHHHHHHHHHTSCTTTHH
T ss_pred ccHHHHHHHHHH-hcCCCCcchHHHHHHHHHHhcCcccch
Confidence 467788666444 33332 1 668899999999999863
No 7
>d2bsca1 b.2.3.5 (A:1-176) Fimbrial adhesin F17-AG lectin domain {Escherichia coli [TaxId: 562]}
Probab=5.88 E-value=53 Score=22.85 Aligned_cols=28 Identities=32% Similarity=0.602 Sum_probs=23.2
Q ss_pred hhhhcccccCCCCCCCceEEEeeceeee
Q 039079 93 NILRGYCDASSVPSLGGLVVIYQPQVSK 120 (123)
Q Consensus 93 ~iLKg~C~~~~~~sP~~~~~~~~~~~~~ 120 (123)
++..|.|.....+|..+|+|...|-+.|
T Consensus 104 nvfsgwcvgantastqglsvrvtpvilk 131 (176)
T d2bsca1 104 NVFSGWCVGANTASTQGLSVRVTPVILK 131 (176)
T ss_dssp EEEEEEECCTTCEEEEEEEEEEEEEESS
T ss_pred hhhcceeecccccccCceeEEEEEEEEe
Confidence 3556889999999999999998887655
No 8
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.56 E-value=85 Score=16.29 Aligned_cols=9 Identities=22% Similarity=0.936 Sum_probs=6.4
Q ss_pred hhhcccccC
Q 039079 94 ILRGYCDAS 102 (123)
Q Consensus 94 iLKg~C~~~ 102 (123)
-+.|||++.
T Consensus 12 YvqGyCtrg 20 (29)
T d2cqea2 12 YITGFCARA 20 (29)
T ss_dssp TTTTCCSCS
T ss_pred heeeeecCC
Confidence 367888875
No 9
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.09 E-value=1.1e+02 Score=16.38 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=10.6
Q ss_pred CCCCchhhhhhhcc
Q 039079 85 LGFTAEEGNILRGY 98 (123)
Q Consensus 85 ~pFt~~e~~iLKg~ 98 (123)
.|||+||-++|...
T Consensus 2 ~~WT~eED~~L~~~ 15 (47)
T d1gv2a2 2 TSWTEEEDRIIYQA 15 (47)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 37899988888654
No 10
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=4.00 E-value=1.3e+02 Score=14.96 Aligned_cols=11 Identities=27% Similarity=0.607 Sum_probs=7.0
Q ss_pred hhCccc-cCccc
Q 039079 56 LNSQAD-IDHDC 66 (123)
Q Consensus 56 lnGe~~-LGp~C 66 (123)
.-|+++ |.++|
T Consensus 7 scgktghikkdc 18 (26)
T d1dsqa_ 7 SCGKTGHIKRDC 18 (26)
T ss_dssp TTCCBSSCTTTT
T ss_pred ecCCcccchhhh
Confidence 446666 77766
Done!