Query 039084
Match_columns 87
No_of_seqs 102 out of 206
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 10:00:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s9v_A Abietadiene synthase, c 100.0 8E-40 2.7E-44 275.7 8.0 84 1-86 39-122 (785)
2 3p5p_A Taxadiene synthase; cla 100.0 1.2E-39 4E-44 274.0 6.5 84 1-86 16-101 (764)
3 3pya_A ENT-copalyl diphosphate 100.0 5.1E-39 1.8E-43 269.6 7.6 82 1-86 17-98 (727)
4 3sdr_A Alpha-bisabolene syntha 100.0 8.1E-39 2.8E-43 270.4 7.7 84 1-86 62-149 (817)
5 1qqf_A Protein (complement C3D 96.7 0.0056 1.9E-07 44.2 6.9 65 15-81 64-144 (277)
6 1hzf_A Complement factor C4A; 96.5 0.0056 1.9E-07 46.4 6.5 64 16-81 118-195 (367)
7 2wy7_A Complement C3D fragment 96.3 0.011 3.7E-07 43.5 6.7 65 15-81 80-160 (310)
8 2sqc_A Squalene-hopene cyclase 96.2 0.0035 1.2E-07 51.0 3.8 67 15-82 491-566 (631)
9 2sqc_A Squalene-hopene cyclase 96.1 0.0064 2.2E-07 49.4 5.0 65 16-83 444-508 (631)
10 2h6f_B Protein farnesyltransfe 96.0 0.0071 2.4E-07 48.0 4.8 42 37-80 219-260 (437)
11 3dss_B Geranylgeranyl transfer 95.7 0.0078 2.7E-07 45.8 3.5 42 39-82 67-108 (331)
12 1qqf_A Protein (complement C3D 95.5 0.008 2.7E-07 43.3 2.8 54 17-82 220-273 (277)
13 3dss_B Geranylgeranyl transfer 95.5 0.015 5.2E-07 44.2 4.4 43 37-81 161-203 (331)
14 2h6f_B Protein farnesyltransfe 95.4 0.011 3.6E-07 47.0 3.4 42 40-83 123-164 (437)
15 2wy7_A Complement C3D fragment 95.1 0.013 4.4E-07 43.1 2.9 53 17-82 236-289 (310)
16 1w6k_A Lanosterol synthase; cy 94.9 0.019 6.6E-07 47.8 3.9 70 12-84 96-166 (732)
17 1hzf_A Complement factor C4A; 94.9 0.0084 2.9E-07 45.4 1.5 55 17-82 305-359 (367)
18 4acq_A Alpha-2-macroglobulin; 94.8 0.051 1.7E-06 48.4 6.3 68 15-82 1013-1089(1451)
19 1w6k_A Lanosterol synthase; cy 93.8 0.07 2.4E-06 44.5 4.9 40 40-82 560-599 (732)
20 2hr0_B Complement C3 alpha' ch 93.6 0.21 7.2E-06 42.1 7.4 46 15-60 325-373 (915)
21 1n4q_B Geranyltransferase type 93.0 0.081 2.8E-06 41.2 3.7 24 37-60 190-213 (377)
22 3q7a_B Farnesyltransferase bet 91.9 0.12 4.2E-06 42.4 3.6 44 40-83 111-154 (520)
23 1n4q_B Geranyltransferase type 91.0 0.3 1E-05 38.0 4.8 22 38-59 142-163 (377)
24 2hr0_B Complement C3 alpha' ch 89.4 0.26 9E-06 41.5 3.6 54 17-82 481-534 (915)
25 1gxm_A Pectate lyase; mechanis 83.5 0.52 1.8E-05 36.8 2.1 22 38-59 97-118 (332)
26 3q7a_B Farnesyltransferase bet 83.5 1.3 4.4E-05 36.4 4.5 19 41-59 170-188 (520)
27 2pn5_A TEP1R, thioester-contai 83.3 0.39 1.3E-05 41.6 1.5 54 17-82 1048-1101(1325)
28 1r76_A Pectate lyase; A-helica 81.4 0.68 2.3E-05 37.0 2.1 21 39-59 176-196 (408)
29 2pmv_A Gastric intrinsic facto 80.4 3.6 0.00012 32.6 5.9 52 5-60 192-247 (399)
30 4fxk_B Complement C4-A alpha c 78.2 4.6 0.00016 33.0 6.0 46 13-60 392-441 (767)
31 4fxk_B Complement C4-A alpha c 77.4 0.96 3.3E-05 37.0 1.8 34 40-82 603-636 (767)
32 2bb6_A TCII, TC II, transcobal 77.3 1.5 5.2E-05 34.9 2.9 65 5-80 215-282 (414)
33 2pn5_A TEP1R, thioester-contai 72.1 5.8 0.0002 34.5 5.4 46 15-60 898-946 (1325)
34 1r76_A Pectate lyase; A-helica 62.7 3.9 0.00013 32.6 2.3 45 15-59 289-335 (408)
35 2bb6_A TCII, TC II, transcobal 59.8 8.6 0.00029 30.6 3.8 24 37-60 201-228 (414)
36 2pmv_A Gastric intrinsic facto 58.3 8.5 0.00029 30.5 3.5 33 40-81 185-217 (399)
37 3cu7_A Complement C5; Mg domai 56.8 15 0.00051 32.9 5.1 44 15-60 1073-1121(1676)
38 1gxm_A Pectate lyase; mechanis 56.8 3.2 0.00011 32.3 0.8 21 38-58 169-189 (332)
39 3cu7_A Complement C5; Mg domai 55.6 11 0.00037 33.8 4.1 34 40-82 1267-1300(1676)
40 4acq_A Alpha-2-macroglobulin; 51.4 6.6 0.00023 35.1 2.0 32 42-82 1210-1241(1451)
41 3dra_B Geranylgeranyltransfera 50.1 20 0.0007 28.0 4.5 21 40-60 193-213 (390)
42 2b39_A C3; thioester, immune d 50.0 9.5 0.00033 34.2 2.8 33 40-81 1248-1280(1661)
43 2b39_A C3; thioester, immune d 47.9 13 0.00044 33.4 3.3 44 15-60 1072-1120(1661)
44 3dra_B Geranylgeranyltransfera 42.8 8.4 0.00029 30.2 1.2 41 41-81 56-106 (390)
45 1rk8_C PYM protein, within the 36.6 8.7 0.0003 23.2 0.3 15 46-60 12-26 (58)
46 3prx_B Cobra venom factor; imm 24.6 16 0.00054 33.4 0.0 45 16-60 1057-1105(1642)
47 2nx6_A Nematocyst outer WALL a 21.9 26 0.0009 17.9 0.5 7 37-43 5-11 (27)
48 2ve8_A FTSK, DNA translocase F 21.0 49 0.0017 20.4 1.8 18 37-54 9-26 (73)
49 1vhf_A Periplasmic divalent ca 20.9 16 0.00056 24.1 -0.5 33 18-57 76-108 (113)
No 1
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=8e-40 Score=275.66 Aligned_cols=84 Identities=54% Similarity=0.932 Sum_probs=80.2
Q ss_pred CHHhhhccCCCCccccchhHhhHHhhcccCCCCCCCCCCchHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHH
Q 039084 1 MIKLMLGSMGDGELGISAYDTAWVALIKNIDGSDINAPQFPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALK 80 (87)
Q Consensus 1 ~ik~~~~~~~~g~~S~S~YDTAWVAmv~~~~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~ 80 (87)
+||+||++|++|++|||+||||||||||+++|++ +|+||+||+||++||++|||||++..++.+|||+||||||||||
T Consensus 39 ~i~~~~~~~~~g~~S~S~YDTAWVamvp~~~~~~--~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~ 116 (785)
T 3s9v_A 39 EIKNMFRCMGYGETNPSAYDTAWVARIPAVDGSD--NPHFPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLT 116 (785)
T ss_dssp HHHHHHHHCSSCCCCCCHHHHHHHTTSBCTTSCS--SBSSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCcccCcHHHhhHHhccccCCCCC--CCCchHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999888 99999999999999999999998777788999999999999999
Q ss_pred hhccCC
Q 039084 81 SWDAHL 86 (87)
Q Consensus 81 ~w~~~~ 86 (87)
+||+|+
T Consensus 117 ~w~~~~ 122 (785)
T 3s9v_A 117 LWRTGE 122 (785)
T ss_dssp HTTCCH
T ss_pred HcccCH
Confidence 999985
No 2
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=1.2e-39 Score=274.04 Aligned_cols=84 Identities=48% Similarity=0.900 Sum_probs=80.1
Q ss_pred CHHhhhccCCCCccccchhHhhHHhhcccC--CCCCCCCCCchHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHH
Q 039084 1 MIKLMLGSMGDGELGISAYDTAWVALIKNI--DGSDINAPQFPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVA 78 (87)
Q Consensus 1 ~ik~~~~~~~~g~~S~S~YDTAWVAmv~~~--~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlA 78 (87)
+||+||++|++|++|||+||||||||||++ +|++ +|+||+||+||++||++|||||+++.++.+|||+||||||||
T Consensus 16 ~i~~~~~~~~~g~~S~S~YDTAWVamvp~~~~~~~~--~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlA 93 (764)
T 3p5p_A 16 KIKDMFNALGDGDISPSAYDTAWVARLATISSDGSE--KPRFPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIA 93 (764)
T ss_dssp HHHHHHHTCSSCCCCCCHHHHHHHHHCEEECTTSCE--EESCHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcccCcHHHHHHHHhCccccCCCCC--CCCChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHH
Confidence 589999999999999999999999999998 8877 999999999999999999999987768999999999999999
Q ss_pred HHhhccCC
Q 039084 79 LKSWDAHL 86 (87)
Q Consensus 79 L~~w~~~~ 86 (87)
||+||+|+
T Consensus 94 L~~w~~~~ 101 (764)
T 3p5p_A 94 LSVWKTGH 101 (764)
T ss_dssp HHHTTCCH
T ss_pred HHHccCCH
Confidence 99999985
No 3
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=5.1e-39 Score=269.63 Aligned_cols=82 Identities=60% Similarity=1.050 Sum_probs=77.5
Q ss_pred CHHhhhccCCCCccccchhHhhHHhhcccCCCCCCCCCCchHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHH
Q 039084 1 MIKLMLGSMGDGELGISAYDTAWVALIKNIDGSDINAPQFPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALK 80 (87)
Q Consensus 1 ~ik~~~~~~~~g~~S~S~YDTAWVAmv~~~~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~ 80 (87)
+||+||++|++|++|||+||||||||||++ ++ +|+||+||+||++||++|||||+++.++.+|||+||||||||||
T Consensus 17 ~ir~~l~~~~~g~~S~S~YDTAWVAmvp~~--~~--~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~ 92 (727)
T 3pya_A 17 SVKTILRNLTDGEITISAYDTAWVALIDAG--DK--TPAFPSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALR 92 (727)
T ss_dssp HHHHHHHTCCSCCCCCCHHHHHHHHTCBCS--SS--SBSCHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCcccCcHHHhHHHhhccCC--CC--CCCCHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHH
Confidence 489999999999999999999999999998 44 89999999999999999999998877888999999999999999
Q ss_pred hhccCC
Q 039084 81 SWDAHL 86 (87)
Q Consensus 81 ~w~~~~ 86 (87)
+||+|+
T Consensus 93 ~w~~~~ 98 (727)
T 3pya_A 93 SWNLFP 98 (727)
T ss_dssp HTTCCH
T ss_pred HccCCH
Confidence 999985
No 4
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=8.1e-39 Score=270.45 Aligned_cols=84 Identities=48% Similarity=0.846 Sum_probs=79.6
Q ss_pred CHHhhhc-cCCCC---ccccchhHhhHHhhcccCCCCCCCCCCchHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHH
Q 039084 1 MIKLMLG-SMGDG---ELGISAYDTAWVALIKNIDGSDINAPQFPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACI 76 (87)
Q Consensus 1 ~ik~~~~-~~~~g---~~S~S~YDTAWVAmv~~~~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcv 76 (87)
+||+||+ ++++| ++|||+||||||||||+++|++ +|+||+||+||++||++|||||+++.++.+|||+||||||
T Consensus 62 ~VK~~l~~~~~~g~~g~~S~S~YDTAWVAmvp~~~~~~--~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcv 139 (817)
T 3sdr_A 62 EIKAMLNPAITGDGESMITPSAYDTAWVARVPAIDGSA--RPQFPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCV 139 (817)
T ss_dssp HHHHHHHHHHTSSCCCCCCCCHHHHHHHHTCBCTTSCS--SBSSHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHhccccCCCCCcccccCHHHhhHHheeecCCCCC--CCCchHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHH
Confidence 4899999 99888 9999999999999999998888 9999999999999999999999887788999999999999
Q ss_pred HHHHhhccCC
Q 039084 77 VALKSWDAHL 86 (87)
Q Consensus 77 lAL~~w~~~~ 86 (87)
||||+||+|+
T Consensus 140 lAL~~w~~~~ 149 (817)
T 3sdr_A 140 LVLLKWNVGD 149 (817)
T ss_dssp HHHHHTTCCH
T ss_pred HHHHHccCCH
Confidence 9999999985
No 5
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=96.67 E-value=0.0056 Score=44.16 Aligned_cols=65 Identities=22% Similarity=0.327 Sum_probs=40.8
Q ss_pred ccchhHhhHHhhccc----CCCCCCCCCCchHHHHHHHh-hcCCCCCcCCCCccch-----------hHHHHHHHHHHHH
Q 039084 15 GISAYDTAWVALIKN----IDGSDINAPQFPSCLKWIAD-NQLPHGSWGDDKVFLA-----------HDRLINTLACIVA 78 (87)
Q Consensus 15 S~S~YDTAWVAmv~~----~~g~~~~~p~FP~~~~wil~-nQ~~DGsWg~~~~~~~-----------~d~ll~TLAcvlA 78 (87)
.+|.+.||.|..+=. ....+ ....-+.++||+. .|.+||+|........ ..++.-|.-+++|
T Consensus 64 ~~s~wlTa~v~~~l~~a~~~~~v~--~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~a 141 (277)
T 1qqf_A 64 PPSTWLTAYVSRVFSLAANLIAID--SQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIA 141 (277)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCC--HHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHH
Confidence 378999998876432 11112 3345678999994 9999999986531110 1234446667777
Q ss_pred HHh
Q 039084 79 LKS 81 (87)
Q Consensus 79 L~~ 81 (87)
|..
T Consensus 142 L~~ 144 (277)
T 1qqf_A 142 LQE 144 (277)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
No 6
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=96.54 E-value=0.0056 Score=46.40 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=42.7
Q ss_pred cchhHhhHHhhc----ccCCCCCCCCCCchHHHHHHHhhcCCCCCcCCCCccch----------hHHHHHHHHHHHHHHh
Q 039084 16 ISAYDTAWVALI----KNIDGSDINAPQFPSCLKWIADNQLPHGSWGDDKVFLA----------HDRLINTLACIVALKS 81 (87)
Q Consensus 16 ~S~YDTAWVAmv----~~~~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~~~~~~----------~d~ll~TLAcvlAL~~ 81 (87)
++.|.||.|... .+.-... ....-++++||++.|.+||+|+....... .+.+.-|.-+++||..
T Consensus 118 ~~~~lTa~v~~~l~~a~~~~~v~--~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~ 195 (367)
T 1hzf_A 118 SSTWLTAFVLKVLSLAQEQVGGS--PEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHH 195 (367)
T ss_dssp CCHHHHHHHHHHHHHHGGGTCCC--HHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSSTTHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHhhccCCCcccccccccccccCCCCCCcccccchHHHHHHHHh
Confidence 688999987653 2211222 45677889999999999999986521111 1346667778888853
No 7
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=96.33 E-value=0.011 Score=43.51 Aligned_cols=65 Identities=20% Similarity=0.344 Sum_probs=40.9
Q ss_pred ccchhHhhHHhhccc----CCCCCCCCCCchHHHHHHHh-hcCCCCCcCCCCccch-----------hHHHHHHHHHHHH
Q 039084 15 GISAYDTAWVALIKN----IDGSDINAPQFPSCLKWIAD-NQLPHGSWGDDKVFLA-----------HDRLINTLACIVA 78 (87)
Q Consensus 15 S~S~YDTAWVAmv~~----~~g~~~~~p~FP~~~~wil~-nQ~~DGsWg~~~~~~~-----------~d~ll~TLAcvlA 78 (87)
.+|.+.||.|..+=. ....+ ....-+.++||+. .|.+||+|........ ..++.-|.-+++|
T Consensus 80 ~~s~wlTa~v~~~l~~a~~~~~v~--~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~a 157 (310)
T 2wy7_A 80 APSTWLTAYVVKVFSLAVNLIAID--SQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLIS 157 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCC--HHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHH
Confidence 378999998876432 11122 3445688999995 9999999986531110 1234447667777
Q ss_pred HHh
Q 039084 79 LKS 81 (87)
Q Consensus 79 L~~ 81 (87)
|..
T Consensus 158 L~~ 160 (310)
T 2wy7_A 158 LQE 160 (310)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
No 8
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=96.20 E-value=0.0035 Score=51.01 Aligned_cols=67 Identities=25% Similarity=0.347 Sum_probs=43.6
Q ss_pred ccchhHhhHHhhcccCCCCCCCCCCchHHHHHHHhhcCCCCCcCCCCccc---------hhHHHHHHHHHHHHHHhh
Q 039084 15 GISAYDTAWVALIKNIDGSDINAPQFPSCLKWIADNQLPHGSWGDDKVFL---------AHDRLINTLACIVALKSW 82 (87)
Q Consensus 15 S~S~YDTAWVAmv~~~~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~~~~~---------~~d~ll~TLAcvlAL~~w 82 (87)
.+.+|.|+.|...=..-+.....+...+.++||++.|.+||+||... .+ ..-.+..|.-||+||..-
T Consensus 491 ~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~-~sy~~~~~~~~~~s~v~~Ta~ALlaL~~a 566 (631)
T 2sqc_A 491 VNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDC-RSYEDPAYAGKGASTPSQTAWALMALIAG 566 (631)
T ss_dssp SSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCG-GGGTCGGGTTCSSCCHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCcc-ccccccccCCCCCCCHHHHHHHHHHHHHc
Confidence 34689999765432111111114556789999999999999998642 11 012367799999998754
No 9
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=96.12 E-value=0.0064 Score=49.42 Aligned_cols=65 Identities=26% Similarity=0.153 Sum_probs=41.3
Q ss_pred cchhHhhHHhhcccCCCCCCCCCCchHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhhc
Q 039084 16 ISAYDTAWVALIKNIDGSDINAPQFPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSWD 83 (87)
Q Consensus 16 ~S~YDTAWVAmv~~~~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w~ 83 (87)
+++.+||.|.+.=..-+.....+.--++++||++.|.+||||.+... ..-+-.|..++.||....
T Consensus 444 ~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~wg---~~~~y~Ta~~l~aL~~~g 508 (631)
T 2sqc_A 444 PSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG---VNYLYGTGAVVSALKAVG 508 (631)
T ss_dssp CBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB---SSHHHHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCCC---CCchHHHHHHHHHHHHhC
Confidence 67789998666432212111134456789999999999999943311 123346888888887543
No 10
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=96.05 E-value=0.0071 Score=48.00 Aligned_cols=42 Identities=24% Similarity=0.188 Sum_probs=30.0
Q ss_pred CCCchHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHH
Q 039084 37 APQFPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALK 80 (87)
Q Consensus 37 ~p~FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~ 80 (87)
.+.....++||++.|..||+||.... ..--...|.-||.||.
T Consensus 219 ~~~v~k~~~~L~s~Q~~DGGwg~~pg--~eSh~~~T~~Al~aL~ 260 (437)
T 2h6f_B 219 PDLFEGTAEWIARCQNWEGGIGGVPG--MEAHGGYTFCGLAALV 260 (437)
T ss_dssp TTTTTTHHHHHHHHBCTTSSBCSSTT--SCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCCCCcCCCCC--CCCCccHHHHHHHHHH
Confidence 45567899999999999999996421 1223456776676664
No 11
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=95.67 E-value=0.0078 Score=45.84 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=32.9
Q ss_pred CchHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhh
Q 039084 39 QFPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSW 82 (87)
Q Consensus 39 ~FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w 82 (87)
-..+.++||+.-|++||+|+.... ..-.+..|.+||.+|..-
T Consensus 67 ~r~~~i~~l~s~Q~~dGGF~g~~g--~~~~l~~Ty~Al~~L~~l 108 (331)
T 3dss_B 67 NKEEILVFIKSCQHECGGVSASIG--HDPHLLYTLSAVQILTLY 108 (331)
T ss_dssp CHHHHHHHHHHTBCTTSCBBSSTT--SCBCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhhhcCCCCCcCCCCC--CCccHHHHHHHHHHHHHc
Confidence 356899999999999999996421 234589999999988753
No 12
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=95.48 E-value=0.008 Score=43.33 Aligned_cols=54 Identities=19% Similarity=0.388 Sum_probs=37.1
Q ss_pred chhHhhHHhhcccCCCCCCCCCCchHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhh
Q 039084 17 SAYDTAWVALIKNIDGSDINAPQFPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSW 82 (87)
Q Consensus 17 S~YDTAWVAmv~~~~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w 82 (87)
.++-|||+.+.=-.-+. ...-.+.++||+++|.+||+|+.. . .|.-||.||.+.
T Consensus 220 ~ve~Ta~aLlal~~~~~---~~~~~~~v~wL~~qq~~~Ggw~sT-----q----~T~~aL~AL~~y 273 (277)
T 1qqf_A 220 NVEATSYALLALLLLKD---FDSVPPVVRWLNDERYYGGGYGST-----Q----ATFMVFQALAQY 273 (277)
T ss_dssp HHHHHHHHHHHHHHTTC---TTSHHHHHHHHHHCCCCTTSTTCH-----H----HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCC---hhhHHHHHHHHHHccCCCCCeecc-----h----HHHHHHHHHHHH
Confidence 67889986664321121 123456899999999999999964 2 466778888764
No 13
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=95.46 E-value=0.015 Score=44.24 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=30.7
Q ss_pred CCCchHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHh
Q 039084 37 APQFPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKS 81 (87)
Q Consensus 37 ~p~FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~ 81 (87)
.+...+.++||++.|.+||+||..... ..-...|..|+.||.-
T Consensus 161 ~~~~~k~v~~L~s~Q~~dGGfg~~pg~--esh~~~T~~al~aL~l 203 (331)
T 3dss_B 161 AINVEKAIEFVLSCMNFDGGFGCRPGS--ESHAGQIYCCTGFLAI 203 (331)
T ss_dssp GSCHHHHHHHHHTTBCTTSCBCSSTTC--CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCCCcCCCCCC--CCcHHHHHHHHHHHHh
Confidence 455789999999999999999965211 1124567777777753
No 14
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=95.39 E-value=0.011 Score=47.03 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=31.9
Q ss_pred chHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhhc
Q 039084 40 FPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSWD 83 (87)
Q Consensus 40 FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w~ 83 (87)
--..++||+..|.+||+|+.... ..--|..|.+||.+|..-+
T Consensus 123 ~~r~v~~l~s~Q~~dGGf~g~~~--~~~~i~~T~~Al~aL~~lg 164 (437)
T 2h6f_B 123 ATDVCQFLELCQSPEGGFGGGPG--QYPHLAPTYAAVNALCIIG 164 (437)
T ss_dssp HHHHHHHHHHHBCTTSSBBSSTT--CCBCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCCcCCccC--CCcchhHHHHHHHHHHHhC
Confidence 45789999999999999996421 1235678999999987543
No 15
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=95.11 E-value=0.013 Score=43.10 Aligned_cols=53 Identities=17% Similarity=0.397 Sum_probs=34.8
Q ss_pred chhHhhHHhhccc-CCCCCCCCCCchHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhh
Q 039084 17 SAYDTAWVALIKN-IDGSDINAPQFPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSW 82 (87)
Q Consensus 17 S~YDTAWVAmv~~-~~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w 82 (87)
.++-|||+.+.=. .+. ...-.+.++||+++|.+||+|+.. .| |.-+|.||.+-
T Consensus 236 ~ve~Ta~aLlal~~~~~----~~~~~~~v~wL~~qq~~~Ggw~sT-----q~----T~~aL~AL~~y 289 (310)
T 2wy7_A 236 NVEATSYALLALLQLKD----FDFVPPVVRWLNEQRYYGGGYGST-----QA----TFMVFQALAQY 289 (310)
T ss_dssp HHHHHHHHHHHHHHHTC----TTTHHHHHHHHHHTTCCCCSTTCH-----HH----HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCC----hhhHHHHHHHHHHccCCCCCeecc-----HH----HHHHHHHHHHH
Confidence 5788998666321 111 122457899999999999999853 33 34467777653
No 16
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=94.94 E-value=0.019 Score=47.84 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=43.9
Q ss_pred CccccchhHhh-HHhhcccCCCCCCCCCCchHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhhcc
Q 039084 12 GELGISAYDTA-WVALIKNIDGSDINAPQFPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSWDA 84 (87)
Q Consensus 12 g~~S~S~YDTA-WVAmv~~~~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w~~ 84 (87)
|+.+..+..|| .|-+.--. |.......--+..+||.++|++||+||... -....+..|.-+.+||+.=..
T Consensus 96 ~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~yl~~~Q~~DGgWgl~~--~~~s~~~~T~~~Y~aLrl~G~ 166 (732)
T 1w6k_A 96 GDYGGPLFLLPGLLITCHVA-RIPLPAGYREEIVRYLRSVQLPDGGWGLHI--EDKSTVFGTALNYVSLRILGV 166 (732)
T ss_dssp CCCCCBSSHHHHHHHHHHHH-TCCCCTTHHHHHHHHHHHHSCTTSCBCSBT--TSCCBHHHHHHHHHHHHHTTC
T ss_pred ccccCchhhhHHHHHHHHHh-CCCCCHHHHHHHHHHHHHhcCCCCCccCCc--CCCccHHHHHHHHHHHHHcCC
Confidence 45555566666 55443222 111112345688999999999999999542 124456677777999986544
No 17
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=94.93 E-value=0.0084 Score=45.43 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=35.9
Q ss_pred chhHhhHHhhcccCCCCCCCCCCchHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhh
Q 039084 17 SAYDTAWVALIKNIDGSDINAPQFPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSW 82 (87)
Q Consensus 17 S~YDTAWVAmv~~~~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w 82 (87)
.++=|||+-|.=...+.+ ...-.+.++||+++|..+|+|+.. . .|.-||.||.+.
T Consensus 305 ~vE~TAyaLLall~~~~~--~~~~~~iv~WL~~qrn~~Ggw~sT-----q----dTvvAL~AL~~y 359 (367)
T 1hzf_A 305 WIETTAYALLHLLLHEGK--AEMADQASAWLTRQGSFQGGFRST-----Q----DTVIALDALSAY 359 (367)
T ss_dssp HHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHTTSTTCSCSH-----H----HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccCc--hhhhHHHHHHHHhCcCCCCCcccH-----H----HHHHHHHHHHHH
Confidence 567788866643211112 233457799999999999999954 3 355667777654
No 18
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=94.78 E-value=0.051 Score=48.42 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=44.7
Q ss_pred ccchhHhhHHhhccc--CCCCCCCCCCchHHHHHHHhhcCCCCCcCCCCccc-------hhHHHHHHHHHHHHHHhh
Q 039084 15 GISAYDTAWVALIKN--IDGSDINAPQFPSCLKWIADNQLPHGSWGDDKVFL-------AHDRLINTLACIVALKSW 82 (87)
Q Consensus 15 S~S~YDTAWVAmv~~--~~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~~~~~-------~~d~ll~TLAcvlAL~~w 82 (87)
..|.+-||+|..+=. ..........+-++++||+++|.+||+|.+..... ..+.+--|.-+++||..=
T Consensus 1013 ~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~ 1089 (1451)
T 4acq_A 1013 QGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEI 1089 (1451)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHT
T ss_pred CCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHc
Confidence 378999998876422 11111115668889999999999999998542100 013466688888888753
No 19
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=93.82 E-value=0.07 Score=44.48 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=28.1
Q ss_pred chHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhh
Q 039084 40 FPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSW 82 (87)
Q Consensus 40 FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w 82 (87)
--++++||+++|.+||||+..-.....+ .|..++.||..-
T Consensus 560 i~rAv~yL~~~Q~~DGsW~g~wg~~~~Y---~T~~al~AL~~a 599 (732)
T 1w6k_A 560 LTQGLEFCRRQQRADGSWEGSWGVCFTY---GTWFGLEAFACM 599 (732)
T ss_dssp HHHHHHHHHHHSCTTSCCCCSSBSSHHH---HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCCCCccCcCCCccch---HHHHHHHHHHHh
Confidence 4578999999999999998642112222 577777777653
No 20
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=93.62 E-value=0.21 Score=42.06 Aligned_cols=46 Identities=24% Similarity=0.460 Sum_probs=31.7
Q ss_pred ccchhHhhHHhhcccCCC--CCCCCCCchHHHHHHH-hhcCCCCCcCCC
Q 039084 15 GISAYDTAWVALIKNIDG--SDINAPQFPSCLKWIA-DNQLPHGSWGDD 60 (87)
Q Consensus 15 S~S~YDTAWVAmv~~~~g--~~~~~p~FP~~~~wil-~nQ~~DGsWg~~ 60 (87)
.+|.|.||.|..+=..-. ........-+.++||. +.|.+||+|...
T Consensus 325 ~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~ 373 (915)
T 2hr0_B 325 APSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQED 373 (915)
T ss_dssp CBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCC
T ss_pred CCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccC
Confidence 478999999887532111 1111345678899999 599999999754
No 21
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=92.95 E-value=0.081 Score=41.18 Aligned_cols=24 Identities=4% Similarity=0.105 Sum_probs=21.3
Q ss_pred CCCchHHHHHHHhhcCCCCCcCCC
Q 039084 37 APQFPSCLKWIADNQLPHGSWGDD 60 (87)
Q Consensus 37 ~p~FP~~~~wil~nQ~~DGsWg~~ 60 (87)
.+....+++||++-|..||+||..
T Consensus 190 ~~~v~ka~~fL~scQn~DGGfGe~ 213 (377)
T 1n4q_B 190 GMDMKKAISYIRRSMSYDNGLAQG 213 (377)
T ss_dssp GSCHHHHHHHHHHTBCTTSSBBSS
T ss_pred hHHHHHHHHHHHHhcCCCCCCCCC
Confidence 556789999999999999999964
No 22
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=91.86 E-value=0.12 Score=42.37 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=33.7
Q ss_pred chHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhhc
Q 039084 40 FPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSWD 83 (87)
Q Consensus 40 FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w~ 83 (87)
.-+.++||+.-|.+||+.+.........-|.+|.|||.+|..-+
T Consensus 111 ~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg 154 (520)
T 3q7a_B 111 KDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAG 154 (520)
T ss_dssp HHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhC
Confidence 34689999999999999986531123455999999999997654
No 23
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=90.97 E-value=0.3 Score=37.99 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.1
Q ss_pred CCchHHHHHHHhhcCCCCCcCC
Q 039084 38 PQFPSCLKWIADNQLPHGSWGD 59 (87)
Q Consensus 38 p~FP~~~~wil~nQ~~DGsWg~ 59 (87)
+--..+++||.+.|.+||||..
T Consensus 142 id~~~~~~fL~~~Q~~DGSf~g 163 (377)
T 1n4q_B 142 VDKEACLAGLRALQLEDGSFCA 163 (377)
T ss_dssp SCHHHHHHHHHHHBCTTSCBCS
T ss_pred hhHHHHHHHHHHhcCCCCCeee
Confidence 3347899999999999999985
No 24
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=89.45 E-value=0.26 Score=41.47 Aligned_cols=54 Identities=17% Similarity=0.318 Sum_probs=35.4
Q ss_pred chhHhhHHhhcccCCCCCCCCCCchHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhh
Q 039084 17 SAYDTAWVALIKNIDGSDINAPQFPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSW 82 (87)
Q Consensus 17 S~YDTAWVAmv~~~~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w 82 (87)
.++.|||+.+.=-..+.. . .-.+.++||+++|..+|+|+.. .| |.-|+.||..-
T Consensus 481 ~ve~TayaLlall~~~~~--~-~~~~~v~wL~~qq~~~Ggw~ST-----Qd----T~~Al~AL~~y 534 (915)
T 2hr0_B 481 NVEATSYALLALLQLKDF--D-FVPPVVRWLNEQRYYGGGYGST-----QA----TFMVFQALAQY 534 (915)
T ss_dssp HHHHHHHHHHHHHHTTCT--T-THHHHHHHHHTCCCSSSSCCSH-----HH----HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCCh--h-hHHHHHHHHHhcccCCCCccch-----hh----HHHHHHHHHHH
Confidence 466788865542211211 2 2456789999999999999854 34 66777787653
No 25
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=83.52 E-value=0.52 Score=36.75 Aligned_cols=22 Identities=9% Similarity=0.262 Sum_probs=19.1
Q ss_pred CCchHHHHHHHhhcCCCCCcCC
Q 039084 38 PQFPSCLKWIADNQLPHGSWGD 59 (87)
Q Consensus 38 p~FP~~~~wil~nQ~~DGsWg~ 59 (87)
-.|-.+++|||.-|.+||+|+.
T Consensus 97 ~Ai~Rgl~wlL~mQ~~nGGWpq 118 (332)
T 1gxm_A 97 DAVRKAANFLVNSQYSTGALPQ 118 (332)
T ss_dssp HHHHHHHHHHHHHCCTTSCCBS
T ss_pred HHHHHHHHHHHhccCCCCCccc
Confidence 3466889999999999999994
No 26
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=83.51 E-value=1.3 Score=36.36 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=17.0
Q ss_pred hHHHHHHHhhcCCCCCcCC
Q 039084 41 PSCLKWIADNQLPHGSWGD 59 (87)
Q Consensus 41 P~~~~wil~nQ~~DGsWg~ 59 (87)
..+++||.+.|.+||||..
T Consensus 170 ~k~v~fL~slQ~~DGSF~g 188 (520)
T 3q7a_B 170 QSIYEFFMRCKRPDGGFVV 188 (520)
T ss_dssp HHHHHHHHHHBCTTSCBBS
T ss_pred HHHHHHHHHHhCCCCCEec
Confidence 4689999999999999975
No 27
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=83.29 E-value=0.39 Score=41.64 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=34.2
Q ss_pred chhHhhHHhhcccCCCCCCCCCCchHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhh
Q 039084 17 SAYDTAWVALIKNIDGSDINAPQFPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSW 82 (87)
Q Consensus 17 S~YDTAWVAmv~~~~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w 82 (87)
.+-+|||+.|.=-..+.. ..-.+-++||+++|+.+|+|... . .|..+|.||.+-
T Consensus 1048 ~ve~tA~aLlall~~~~~---~~~~~~v~wL~~q~~~~g~w~sT-----q----~T~~aL~AL~~y 1101 (1325)
T 2pn5_A 1048 PIETTAYALLSFVMAEKY---TDGIPVMNWLVNQRYVTGSFPST-----Q----DTFVGLKALTKM 1101 (1325)
T ss_dssp HHHHHHHHHHHHHHTTCH---HHHHHHHHHHHTTCCTTSSCSSH-----H----HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhhccc---hhhHHHHHHHHhccCCCCCccch-----H----HHHHHHHHHHHH
Confidence 566889865432111211 11245689999999999999954 2 355677777653
No 28
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=81.43 E-value=0.68 Score=36.97 Aligned_cols=21 Identities=19% Similarity=0.597 Sum_probs=18.3
Q ss_pred CchHHHHHHHhhcCCCCCcCC
Q 039084 39 QFPSCLKWIADNQLPHGSWGD 59 (87)
Q Consensus 39 ~FP~~~~wil~nQ~~DGsWg~ 59 (87)
.|-.+++|||.-|.+||+|+.
T Consensus 176 Ai~Rgl~wlL~mQ~~nGGWpq 196 (408)
T 1r76_A 176 AALKGIEYLLASQFPNGGWPQ 196 (408)
T ss_dssp HHHHHHHHHHHHSCTTSCCBS
T ss_pred HHHHHHHHHHHccCCCCCCcC
Confidence 356789999999999999984
No 29
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=80.39 E-value=3.6 Score=32.62 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=36.7
Q ss_pred hhccCC-CCccccchhHhhHH--hhccc-CCCCCCCCCCchHHHHHHHhhcCCCCCcCCC
Q 039084 5 MLGSMG-DGELGISAYDTAWV--ALIKN-IDGSDINAPQFPSCLKWIADNQLPHGSWGDD 60 (87)
Q Consensus 5 ~~~~~~-~g~~S~S~YDTAWV--Amv~~-~~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~ 60 (87)
++...+ +|.+ ..+|=|+.+ ||.-. ..... .|-.+..++||+. |.+||+++.+
T Consensus 192 l~~~q~~dG~f-Gn~yST~LA~QAL~~~~~~~~~--~W~c~~al~~l~~-q~~~G~F~np 247 (399)
T 2pmv_A 192 ISMKIKDNGII-GDIYSTGLAMQALSVTPEPSKK--EWNCKKTTDMILN-EIKQGKFHNP 247 (399)
T ss_dssp HTTSBCTTSCB-SSHHHHHHHHHHHHHCSSCCSS--CCCHHHHHHHHHH-HHTTTTTCSH
T ss_pred HHHhhcCCCcc-cccccHHHHHHHHHhcCCCccc--cccHHHHHHHHHH-HhhCCCcCCH
Confidence 444443 5665 489999953 44333 22334 7899999999999 9999999855
No 30
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=78.20 E-value=4.6 Score=32.97 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=31.5
Q ss_pred ccccchhHhhHHhhcc----cCCCCCCCCCCchHHHHHHHhhcCCCCCcCCC
Q 039084 13 ELGISAYDTAWVALIK----NIDGSDINAPQFPSCLKWIADNQLPHGSWGDD 60 (87)
Q Consensus 13 ~~S~S~YDTAWVAmv~----~~~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~ 60 (87)
....|.|=||+|+.+= +..... .-.--+.++||+.+|.+||++-..
T Consensus 392 ~~~~s~wLTAyV~~~l~~A~~~i~id--~~~i~~a~~wL~~~Q~~~G~f~e~ 441 (767)
T 4fxk_B 392 SRDSSTWLTAFVLKVLSLAQEQVGGS--PEKLQETSNWLLSQQQADGSFQDP 441 (767)
T ss_dssp SSCBCHHHHHHHHHHHHHTCSSSSCC--HHHHHHHHHHHHHTBCTTSCBCCS
T ss_pred CCCCCchhHHHHHHHHHHHHhhcCcc--hHHHHHHHHHHHHhhhhcccchhc
Confidence 3457899999987642 222222 223456889999999999999754
No 31
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=77.36 E-value=0.96 Score=36.96 Aligned_cols=34 Identities=15% Similarity=0.360 Sum_probs=26.0
Q ss_pred chHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhh
Q 039084 40 FPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSW 82 (87)
Q Consensus 40 FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w 82 (87)
=.+.+.||+++|+.+|+|... . .|.-||.||..-
T Consensus 603 a~~iv~WL~~Qr~~~Ggf~ST-----Q----dTv~AL~ALa~y 636 (767)
T 4fxk_B 603 ADQASAWLTRQGSFQGGFRST-----Q----DTVIALDALSAY 636 (767)
T ss_dssp HHHHHHHHHHTCCTTSSCSSH-----H----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCcCH-----H----HHHHHHHHHHHH
Confidence 346789999999999999854 3 466677777553
No 32
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=77.33 E-value=1.5 Score=34.92 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=41.8
Q ss_pred hhccC-CCCccccchhHhhHH--hhcccCCCCCCCCCCchHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHH
Q 039084 5 MLGSM-GDGELGISAYDTAWV--ALIKNIDGSDINAPQFPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALK 80 (87)
Q Consensus 5 ~~~~~-~~g~~S~S~YDTAWV--Amv~~~~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~ 80 (87)
++... .+|.+. .+|=||++ ||.-.........|..+..++||+. |.+||+++.+ +.|.-.+.||.
T Consensus 215 l~~~Q~~dG~FG-N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~np---------~ataQ~lpaL~ 282 (414)
T 2bb6_A 215 ILKAQTPEGYFG-NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQNP---------LMISQLLPVLN 282 (414)
T ss_dssp HHHTBCTTSCBS-STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCCSH---------HHHHHHHHHTT
T ss_pred HHHhhcCCCCcc-chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCCCh---------HHHHHHHHHhc
Confidence 34433 367664 78999975 3333221111002778889999998 9999999854 36666666664
No 33
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=72.12 E-value=5.8 Score=34.46 Aligned_cols=46 Identities=28% Similarity=0.333 Sum_probs=31.4
Q ss_pred ccchhHhhHHhhccc---CCCCCCCCCCchHHHHHHHhhcCCCCCcCCC
Q 039084 15 GISAYDTAWVALIKN---IDGSDINAPQFPSCLKWIADNQLPHGSWGDD 60 (87)
Q Consensus 15 S~S~YDTAWVAmv~~---~~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~ 60 (87)
.+|.|=||.|..+=. .-+........-++++||.+.|.+||+|-..
T Consensus 898 ~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~ 946 (1325)
T 2pn5_A 898 NGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKA 946 (1325)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCC
T ss_pred CCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCcccc
Confidence 578899998766422 1121111345668899999999999999643
No 34
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=62.66 E-value=3.9 Score=32.58 Aligned_cols=45 Identities=13% Similarity=0.323 Sum_probs=24.3
Q ss_pred ccchhHhhHHhhccc-CCCCCC-CCCCchHHHHHHHhhcCCCCCcCC
Q 039084 15 GISAYDTAWVALIKN-IDGSDI-NAPQFPSCLKWIADNQLPHGSWGD 59 (87)
Q Consensus 15 S~S~YDTAWVAmv~~-~~g~~~-~~p~FP~~~~wil~nQ~~DGsWg~ 59 (87)
|-+.-+|||+-+.=- .+.+.. -...-+..++||..+|.+||.|..
T Consensus 289 sLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~WL~s~Q~~dg~w~~ 335 (408)
T 1r76_A 289 ALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWLNTSVIRDRAWVK 335 (408)
T ss_dssp CEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHSCCCC-----
T ss_pred cccHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhcCCCceee
Confidence 456778888733211 111110 011467899999999999999983
No 35
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=59.79 E-value=8.6 Score=30.60 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=19.8
Q ss_pred CCCchHHH----HHHHhhcCCCCCcCCC
Q 039084 37 APQFPSCL----KWIADNQLPHGSWGDD 60 (87)
Q Consensus 37 ~p~FP~~~----~wil~nQ~~DGsWg~~ 60 (87)
.+.+...+ ++|+..|.+||+.|+.
T Consensus 201 ~~~i~~al~~l~~~l~~~Q~~dG~FGN~ 228 (414)
T 2bb6_A 201 RNRINLALKRVQEKILKAQTPEGYFGNV 228 (414)
T ss_dssp HHHHHHHHHHHHHHHHHTBCTTSCBSST
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccch
Confidence 45678888 8888889999999964
No 36
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=58.33 E-value=8.5 Score=30.52 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=24.2
Q ss_pred chHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHh
Q 039084 40 FPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKS 81 (87)
Q Consensus 40 FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~ 81 (87)
..+-+++|+..|.+||++|+ +-||.-+|-||..
T Consensus 185 i~~~~~~l~~~q~~dG~fGn---------~yST~LA~QAL~~ 217 (399)
T 2pmv_A 185 LKDIVEKISMKIKDNGIIGD---------IYSTGLAMQALSV 217 (399)
T ss_dssp HHHHHHHHTTSBCTTSCBSS---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcccc---------cccHHHHHHHHHh
Confidence 34556778888999999995 4577777777753
No 37
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=56.84 E-value=15 Score=32.95 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=32.1
Q ss_pred ccchhHhhHHhhcc----cCCCCCCCCCCchHHHHHHHh-hcCCCCCcCCC
Q 039084 15 GISAYDTAWVALIK----NIDGSDINAPQFPSCLKWIAD-NQLPHGSWGDD 60 (87)
Q Consensus 15 S~S~YDTAWVAmv~----~~~g~~~~~p~FP~~~~wil~-nQ~~DGsWg~~ 60 (87)
+.|.|=||+|+.+= +....+ .-++-+.++||.+ .|.+||+|...
T Consensus 1073 ~~s~wLTAyv~~~l~~A~~~~~v~--~~~l~~a~~~L~~~~q~~~g~f~~~ 1121 (1676)
T 3cu7_A 1073 SASTWLTAFALRVLGQVNKYVEQN--QNSICNSLLWLVENYQLDNGSFKEN 1121 (1676)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSCCC--HHHHHHHHHHHHHHSBCTTSCBCCC
T ss_pred CCcEEEeHHHHHHHHHHHhcccCC--HHHHHHHHHHHHHhhCCCCCcccCC
Confidence 57899999988742 222222 4456788999999 89999999754
No 38
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=56.76 E-value=3.2 Score=32.29 Aligned_cols=21 Identities=10% Similarity=0.017 Sum_probs=17.4
Q ss_pred CCchHHHHHHHhhcCCCCCcC
Q 039084 38 PQFPSCLKWIADNQLPHGSWG 58 (87)
Q Consensus 38 p~FP~~~~wil~nQ~~DGsWg 58 (87)
+.+-..++||++.|.+||||-
T Consensus 169 ~av~Rgid~Llk~Qe~dggw~ 189 (332)
T 1gxm_A 169 TAVTKGTDYILKAQWKQNGVL 189 (332)
T ss_dssp HHHHHHHHHHHHHSCEETTEE
T ss_pred HHHHHHHHHHHHhhCccCCCc
Confidence 445678999999999999763
No 39
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=55.59 E-value=11 Score=33.81 Aligned_cols=34 Identities=21% Similarity=0.497 Sum_probs=25.2
Q ss_pred chHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhh
Q 039084 40 FPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSW 82 (87)
Q Consensus 40 FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w 82 (87)
-++.+.||+++|..+|+|.... .|.-|+.||.+-
T Consensus 1267 ~~~iv~wL~~qr~~~Gg~~STQ---------dT~~Al~AL~~y 1300 (1676)
T 3cu7_A 1267 VNPVIKWLSEEQRYGGGFYSTQ---------DTINAIEGLTEY 1300 (1676)
T ss_dssp HHHHHHHHHHHSCSSSCCSTTT---------THHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCccccH---------HHHHHHHHHHHH
Confidence 3466899999999999999652 355667777653
No 40
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=51.40 E-value=6.6 Score=35.10 Aligned_cols=32 Identities=25% Similarity=0.597 Sum_probs=25.3
Q ss_pred HHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhh
Q 039084 42 SCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSW 82 (87)
Q Consensus 42 ~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w 82 (87)
..+.||.++|..+|+|+.. . .|.-|+.||.+.
T Consensus 1210 ~iv~WL~~qr~~~Ggf~ST-----Q----dTv~aL~ALa~Y 1241 (1451)
T 4acq_A 1210 NIVKWITKQQNAQGGFSST-----Q----DTVVALHALSKY 1241 (1451)
T ss_dssp TTHHHHTTCCCTTSCCSSH-----H----HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcccH-----H----HHHHHHHHHHHH
Confidence 5699999999999999954 3 377777787654
No 41
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=50.13 E-value=20 Score=27.98 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=18.8
Q ss_pred chHHHHHHHhhcCCCCCcCCC
Q 039084 40 FPSCLKWIADNQLPHGSWGDD 60 (87)
Q Consensus 40 FP~~~~wil~nQ~~DGsWg~~ 60 (87)
....++||++-|..||+-|..
T Consensus 193 ~~~~~~~I~~cq~ydGGfg~~ 213 (390)
T 3dra_B 193 LISLQQFILDRININGGFSST 213 (390)
T ss_dssp HHHHHHHHHTTBCTTSCBCSS
T ss_pred HHHHHHHHHHhcCCCCCcCCC
Confidence 578999999999999999954
No 42
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=49.98 E-value=9.5 Score=34.19 Aligned_cols=33 Identities=21% Similarity=0.566 Sum_probs=24.7
Q ss_pred chHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHh
Q 039084 40 FPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKS 81 (87)
Q Consensus 40 FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~ 81 (87)
-.+.+.||+++|..+|+|... . .|.-|+.||..
T Consensus 1248 ~~~iv~wL~~qr~~~gg~~ST-----q----dT~~Al~AL~~ 1280 (1661)
T 2b39_A 1248 TPPVVRWLNEQRYYGGGYGST-----Q----ATFMVFQALAQ 1280 (1661)
T ss_dssp SHHHHHHHHHCCTBTTBBCSH-----H----HHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCcccc-----h----HHHHHHHHHHH
Confidence 356789999999999999854 3 35566777754
No 43
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=47.93 E-value=13 Score=33.35 Aligned_cols=44 Identities=27% Similarity=0.480 Sum_probs=31.6
Q ss_pred ccchhHhhHHhhcc----cCCCCCCCCCCchHHHHHHH-hhcCCCCCcCCC
Q 039084 15 GISAYDTAWVALIK----NIDGSDINAPQFPSCLKWIA-DNQLPHGSWGDD 60 (87)
Q Consensus 15 S~S~YDTAWVAmv~----~~~g~~~~~p~FP~~~~wil-~nQ~~DGsWg~~ 60 (87)
..|.|=||+|+.+= +....+ .-+.-+.++||. +.|.+||+|...
T Consensus 1072 ~~s~wLTAyv~~~l~~A~~~~~v~--~~~l~~a~~~L~~~~q~~~g~f~~~ 1120 (1661)
T 2b39_A 1072 PPSTWLTAYVVKVFALAANLIAID--SKDLCETVKWLILEKQKPDGIFQED 1120 (1661)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCC--HHHHHHHHHHHHHHTBCTTSCBCCC
T ss_pred CCchhhhHHHHHHHHhhhhcccCC--HHHHHHHHHHhhHhhCCCCCccccc
Confidence 57899999988742 222222 445678899999 499999999643
No 44
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=42.77 E-value=8.4 Score=30.18 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=27.5
Q ss_pred hHHHHHHHhhcCCC----CCcCCCCcc--c----hhHHHHHHHHHHHHHHh
Q 039084 41 PSCLKWIADNQLPH----GSWGDDKVF--L----AHDRLINTLACIVALKS 81 (87)
Q Consensus 41 P~~~~wil~nQ~~D----GsWg~~~~~--~----~~d~ll~TLAcvlAL~~ 81 (87)
-+.++||...|.++ |+-+....+ . ..--|.+|++||++|.-
T Consensus 56 ~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~i 106 (390)
T 3dra_B 56 IYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLI 106 (390)
T ss_dssp HHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHH
Confidence 35789999987763 666543110 0 12459999999999864
No 45
>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1
Probab=36.65 E-value=8.7 Score=23.20 Aligned_cols=15 Identities=27% Similarity=0.820 Sum_probs=11.3
Q ss_pred HHHhhcCCCCCcCCC
Q 039084 46 WIADNQLPHGSWGDD 60 (87)
Q Consensus 46 wil~nQ~~DGsWg~~ 60 (87)
+|-..|++||+|--.
T Consensus 12 ~I~~s~RpDGT~RK~ 26 (58)
T 1rk8_C 12 FIPATKRPDGTWRKA 26 (58)
T ss_dssp EECCEECTTSCEECC
T ss_pred EcccccCCCCccccc
Confidence 345689999999743
No 46
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=24.60 E-value=16 Score=33.40 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=0.0
Q ss_pred cchhHhhHHhhcccC---CCCCCCCCCchHHHHHHHh-hcCCCCCcCCC
Q 039084 16 ISAYDTAWVALIKNI---DGSDINAPQFPSCLKWIAD-NQLPHGSWGDD 60 (87)
Q Consensus 16 ~S~YDTAWVAmv~~~---~g~~~~~p~FP~~~~wil~-nQ~~DGsWg~~ 60 (87)
.|.+=||+|..+=.. -+..+..-..-+.++||+. +|.+||+|.+.
T Consensus 1057 ~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~ 1105 (1642)
T 3prx_B 1057 SSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKEN 1105 (1642)
T ss_dssp -------------------------------------------------
T ss_pred CccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCccccc
Confidence 688899998765321 1110114456689999997 79999999754
No 47
>2nx6_A Nematocyst outer WALL antigen; disulfide rich, turns, structural protein; NMR {Hydra vulgaris}
Probab=21.90 E-value=26 Score=17.89 Aligned_cols=7 Identities=86% Similarity=1.858 Sum_probs=5.5
Q ss_pred CCCchHH
Q 039084 37 APQFPSC 43 (87)
Q Consensus 37 ~p~FP~~ 43 (87)
-|+||+|
T Consensus 5 cpqfpsc 11 (27)
T 2nx6_A 5 CPQFPSC 11 (27)
T ss_dssp STTCTTC
T ss_pred CCCCCCC
Confidence 6888876
No 48
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=21.02 E-value=49 Score=20.40 Aligned_cols=18 Identities=6% Similarity=0.475 Sum_probs=15.9
Q ss_pred CCCchHHHHHHHhhcCCC
Q 039084 37 APQFPSCLKWIADNQLPH 54 (87)
Q Consensus 37 ~p~FP~~~~wil~nQ~~D 54 (87)
-++|.+++++++++|..-
T Consensus 9 D~Ly~~A~~~V~~~~~aS 26 (73)
T 2ve8_A 9 DPLYDEAVRFVTESRRAS 26 (73)
T ss_dssp CTTHHHHHHHHHHHCCCC
T ss_pred cHHHHHHHHHHHhcCCcc
Confidence 699999999999998754
No 49
>1vhf_A Periplasmic divalent cation tolerance protein; structural genomics, unknown function; 1.54A {Thermotoga maritima} SCOP: d.58.5.2
Probab=20.90 E-value=16 Score=24.07 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=18.1
Q ss_pred hhHhhHHhhcccCCCCCCCCCCchHHHHHHHhhcCCCCCc
Q 039084 18 AYDTAWVALIKNIDGSDINAPQFPSCLKWIADNQLPHGSW 57 (87)
Q Consensus 18 ~YDTAWVAmv~~~~g~~~~~p~FP~~~~wil~nQ~~DGsW 57 (87)
.||+-=+-.+|-..| .|..++||.++-.+|||=
T Consensus 76 pYevPeIi~lpi~~g-------~~~Yl~Wi~~~t~~~~~~ 108 (113)
T 1vhf_A 76 PYETPAIFTLKVENV-------LTEYMNWLRESVLEGGSH 108 (113)
T ss_dssp SSSSCCEEEEECSCC-------CHHHHHHHHHHC------
T ss_pred CCcCCEEEEEEccCC-------CHHHHHHHHHHcCCCCcc
Confidence 466654444444344 469999999999998873
Done!