Query 039084
Match_columns 87
No_of_seqs 102 out of 206
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 10:00:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039084.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039084hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2sqca1 a.102.4.2 (A:8-36,A:30 97.3 0.00016 1.1E-08 53.1 5.0 66 16-83 214-289 (352)
2 d1w6ka2 a.102.4.2 (A:100-378) 97.1 0.00019 1.4E-08 52.9 3.9 45 40-86 25-69 (279)
3 d2sqca2 a.102.4.2 (A:37-307) S 97.1 0.00023 1.6E-08 50.8 4.1 46 37-84 22-67 (271)
4 d1w6ka1 a.102.4.2 (A:6-99,A:37 96.6 0.00078 5.7E-08 51.6 4.3 65 16-82 300-378 (448)
5 d2sqca1 a.102.4.2 (A:8-36,A:30 96.2 0.0026 1.9E-07 46.3 4.8 45 37-84 187-231 (352)
6 d2sqca2 a.102.4.2 (A:37-307) S 95.6 0.0056 4.1E-07 43.3 4.3 45 16-60 179-225 (271)
7 d1w6ka1 a.102.4.2 (A:6-99,A:37 95.5 0.0091 6.6E-07 45.4 5.2 40 42-84 278-317 (448)
8 d3dssb1 a.102.4.3 (B:7-331) Ra 95.0 0.0081 5.9E-07 43.7 3.5 38 41-80 63-100 (325)
9 d1hzfa_ a.102.4.4 (A:) C4adg f 94.5 0.0081 5.9E-07 41.6 2.3 38 37-83 284-321 (326)
10 d2h6fb1 a.102.4.3 (B:521-921) 92.7 0.039 2.8E-06 41.7 3.4 39 41-81 104-142 (401)
11 d3dssb1 a.102.4.3 (B:7-331) Ra 90.8 0.15 1.1E-05 36.7 4.7 24 37-60 155-178 (325)
12 d1c3da_ a.102.4.4 (A:) C3D, a 88.4 0.18 1.3E-05 33.6 3.3 35 39-82 255-289 (294)
13 d1hzfa_ a.102.4.4 (A:) C4adg f 87.9 0.79 5.7E-05 31.0 6.5 45 15-60 78-125 (326)
14 d1gxma_ a.102.5.1 (A:) Polygal 86.3 0.15 1.1E-05 37.7 2.1 21 39-59 90-110 (324)
15 d1r76a_ a.102.5.1 (A:) Polygal 84.8 0.55 4E-05 35.5 4.7 21 39-59 176-196 (408)
16 d1rk8c_ b.72.3.1 (C:) Pym (Wit 77.6 0.071 5.1E-06 27.9 -2.0 15 46-60 10-24 (33)
17 d2h6fb1 a.102.4.3 (B:521-921) 75.6 2.3 0.00017 31.5 5.4 24 37-60 199-222 (401)
18 d1n4qb_ a.102.4.3 (B:) Protein 71.3 2.4 0.00017 30.9 4.4 40 37-76 173-216 (346)
19 d1c3da_ a.102.4.4 (A:) C3D, a 65.2 1.5 0.00011 28.8 2.1 17 42-58 58-74 (294)
20 d1r76a_ a.102.5.1 (A:) Polygal 45.1 2.9 0.00021 31.3 0.8 18 40-57 247-264 (408)
21 d1gxma_ a.102.5.1 (A:) Polygal 45.0 2.9 0.00021 30.5 0.8 17 40-56 163-179 (324)
22 d1w6ka2 a.102.4.2 (A:100-378) 31.8 10 0.00073 26.8 1.9 32 41-76 218-249 (279)
23 d1wjia_ a.5.2.1 (A:) Tudor dom 26.7 16 0.0011 20.1 1.7 28 20-54 24-51 (63)
24 d2crna1 a.5.2.1 (A:8-58) Suppr 25.1 17 0.0013 19.2 1.7 13 42-54 33-45 (51)
25 d2af7a1 a.152.1.2 (A:1-119) Ga 22.8 72 0.0052 18.8 4.9 39 40-80 30-68 (119)
No 1
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}
Probab=97.26 E-value=0.00016 Score=53.05 Aligned_cols=66 Identities=23% Similarity=0.347 Sum_probs=43.6
Q ss_pred cchhHhhHHhhccc-C-CCCCCCCCCchHHHHHHHhhcCCCCCcCCCCccc--------hhHHHHHHHHHHHHHHhhc
Q 039084 16 ISAYDTAWVALIKN-I-DGSDINAPQFPSCLKWIADNQLPHGSWGDDKVFL--------AHDRLINTLACIVALKSWD 83 (87)
Q Consensus 16 ~S~YDTAWVAmv~~-~-~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~~~~~--------~~d~ll~TLAcvlAL~~w~ 83 (87)
+..|-|+.+.+.=. . .... .+.-...++||++.|++||+||...... ..-.+.+|.-||+||..-+
T Consensus 214 ~~~y~t~~~l~aL~~~g~~~~--~~~v~ka~~~L~~~Q~~dGgWg~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~a~ 289 (352)
T d2sqca1 214 NYLYGTGAVVSALKAVGIDTR--EPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGG 289 (352)
T ss_dssp SHHHHHHHHHHHHHHTTCCTT--SHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTT
T ss_pred CcchHHHHHHHHHHhcccccc--hHHHHHHHHHHHhccCCCCCcccCcccccCcccCCCCCCcHHHHHHHHHHHHhcC
Confidence 45788886543222 1 1223 5667789999999999999999541100 0112788999999997654
No 2
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.07 E-value=0.00019 Score=52.88 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=34.3
Q ss_pred chHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhhccCC
Q 039084 40 FPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSWDAHL 86 (87)
Q Consensus 40 FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w~~~~ 86 (87)
--+.++||.++|++||+||... -..--+..|.-|.+||+-.....
T Consensus 25 ~~e~~ryL~~~Q~~DGgWg~~~--~g~s~i~~T~~ay~ALrl~G~~~ 69 (279)
T d1w6ka2 25 REEIVRYLRSVQLPDGGWGLHI--EDKSTVFGTALNYVSLRILGVGP 69 (279)
T ss_dssp HHHHHHHHHHHSCTTSCBCSBT--TSCCBHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHhhcCCCCccCCC--CCCccHHHHHHHHHHHHHhCCCC
Confidence 3588999999999999998431 11233788999999999876543
No 3
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}
Probab=97.07 E-value=0.00023 Score=50.80 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=33.1
Q ss_pred CCCchHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhhcc
Q 039084 37 APQFPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSWDA 84 (87)
Q Consensus 37 ~p~FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w~~ 84 (87)
.+.=-+..+||+++|++||+||.... ..--+..|.-|++||+.=..
T Consensus 22 ~~~~~~~~~~l~~~Q~~dGgW~~~~~--~~~~~~~T~~~~~AL~~~g~ 67 (271)
T d2sqca2 22 RDRMEKIRRYLLHEQREDGTWALYPG--GPPDLDTTIEAYVALKYIGM 67 (271)
T ss_dssp HHHHHHHHHHHHHHSCTTSCCCSSTT--CCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHccCCCCCccCCCC--CCCcHHHHHHHHHHHHHhCC
Confidence 33344889999999999999994311 12335679999999987543
No 4
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.64 E-value=0.00078 Score=51.59 Aligned_cols=65 Identities=20% Similarity=0.299 Sum_probs=42.2
Q ss_pred cchhHhhHHhh--ccc-C---CCCCCCCCCchHHHHHHHhhcCCCCCcCCCCc--------cchhHHHHHHHHHHHHHHh
Q 039084 16 ISAYDTAWVAL--IKN-I---DGSDINAPQFPSCLKWIADNQLPHGSWGDDKV--------FLAHDRLINTLACIVALKS 81 (87)
Q Consensus 16 ~S~YDTAWVAm--v~~-~---~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~~~--------~~~~d~ll~TLAcvlAL~~ 81 (87)
+-.|-|+.+.+ .-. . ++.. .+.-.+.++||+.+|++||+||.... ....-.+.+|.-+|+||..
T Consensus 300 ~~~ygT~~al~aL~~~G~~~~~~~~--~~~v~ka~~wLls~Q~~DGGWge~~~s~~~~~~~~~~~s~~~~TAwAl~aL~~ 377 (448)
T d1w6ka1 300 CFTYGTWFGLEAFACMGQTYRDGTA--CAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMA 377 (448)
T ss_dssp SHHHHHHHHHHHHHHTTCCCBTTBC--CHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhCcCcccccc--cHHHHHHHHHHHhccCCCCCccCCCccccCcccCCCCCCcHHHHHHHHHHHHh
Confidence 35788886533 221 1 1122 45567899999999999999996410 0111237889999999975
Q ss_pred h
Q 039084 82 W 82 (87)
Q Consensus 82 w 82 (87)
-
T Consensus 378 a 378 (448)
T d1w6ka1 378 V 378 (448)
T ss_dssp T
T ss_pred c
Confidence 4
No 5
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}
Probab=96.23 E-value=0.0026 Score=46.29 Aligned_cols=45 Identities=24% Similarity=0.271 Sum_probs=33.7
Q ss_pred CCCchHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhhcc
Q 039084 37 APQFPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSWDA 84 (87)
Q Consensus 37 ~p~FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w~~ 84 (87)
.+.--.+++||+++|.+||+|..... ....-.|..++.||...+.
T Consensus 187 ~~~I~kav~~L~~~Q~~dG~w~~~~~---~~~~y~t~~~l~aL~~~g~ 231 (352)
T d2sqca1 187 WKVIRRAVEYLKREQKPDGSWFGRWG---VNYLYGTGAVVSALKAVGI 231 (352)
T ss_dssp SHHHHHHHHHHHHHCCTTSCCCCSSB---SSHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHhccCCCCCccccCC---CCcchHHHHHHHHHHhccc
Confidence 45567889999999999999976532 2235568888899887654
No 6
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}
Probab=95.65 E-value=0.0056 Score=43.29 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=29.6
Q ss_pred cchhHhhHHhhc--ccCCCCCCCCCCchHHHHHHHhhcCCCCCcCCC
Q 039084 16 ISAYDTAWVALI--KNIDGSDINAPQFPSCLKWIADNQLPHGSWGDD 60 (87)
Q Consensus 16 ~S~YDTAWVAmv--~~~~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~ 60 (87)
..+|+|++..+. .........++...+|++||+++|.+||+||.-
T Consensus 179 ~~~~~~~~~~l~~~e~l~~~~lr~~a~~~a~~wl~~~q~~dGgwG~i 225 (271)
T d2sqca2 179 GWIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGI 225 (271)
T ss_dssp CHHHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHCCTTSSSTTS
T ss_pred cHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHccCCCCcccc
Confidence 347888764432 222221111455678999999999999999954
No 7
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.45 E-value=0.0091 Score=45.45 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhhcc
Q 039084 42 SCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSWDA 84 (87)
Q Consensus 42 ~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w~~ 84 (87)
.+++||.++|.+||||...-. ..-+-.|..++.||..-+.
T Consensus 278 ral~yL~~~Q~~DGsW~g~wg---~~~~ygT~~al~aL~~~G~ 317 (448)
T d1w6ka1 278 QGLEFCRRQQRADGSWEGSWG---VCFTYGTWFGLEAFACMGQ 317 (448)
T ss_dssp HHHHHHHHHSCTTSCCCCSSB---SSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCCCCCcccccCC---CcccHHHHHHHHHHHHhCc
Confidence 568999999999999976532 2235568889999987643
No 8
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=95.01 E-value=0.0081 Score=43.67 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=30.5
Q ss_pred hHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHH
Q 039084 41 PSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALK 80 (87)
Q Consensus 41 P~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~ 80 (87)
-+.++||...|.+||+|+.... ..-.++.|.+|+.+|.
T Consensus 63 ~~~i~~L~s~Q~~dGGf~g~~~--~~~~l~~T~~al~~L~ 100 (325)
T d3dssb1 63 EEILVFIKSCQHECGGVSASIG--HDPHLLYTLSAVQILT 100 (325)
T ss_dssp HHHHHHHHHTBCTTSCBBSSTT--SCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcCCCCC--CcccHHHHHHHHHHHH
Confidence 3789999999999999996521 2345889999998885
No 9
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.53 E-value=0.0081 Score=41.57 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=30.1
Q ss_pred CCCchHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhhc
Q 039084 37 APQFPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSWD 83 (87)
Q Consensus 37 ~p~FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w~ 83 (87)
.+.-++.+.||+++|..+|+|+.- .| |..||.||.+..
T Consensus 284 ~~~~~~~~~WL~~qr~~~Ggw~ST-----Qd----T~~al~AL~~y~ 321 (326)
T d1hzfa_ 284 AEMADQASAWLTRQGSFQGGFRST-----QD----TVIALDALSAYW 321 (326)
T ss_dssp SHHHHHHHHHHHHHTTSTTCSCSH-----HH----HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhccCCCCCccH-----HH----HHHHHHHHHHHH
Confidence 444578999999999999999743 44 888899997653
No 10
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.70 E-value=0.039 Score=41.74 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=30.8
Q ss_pred hHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHh
Q 039084 41 PSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKS 81 (87)
Q Consensus 41 P~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~ 81 (87)
-+.++||...|.+||+|+.... ..-.|.+|.+||.+|.-
T Consensus 104 ~~ii~~l~~~q~~~GGF~g~pg--~~~hla~Ty~Al~~L~i 142 (401)
T d2h6fb1 104 TDVCQFLELCQSPEGGFGGGPG--QYPHLAPTYAAVNALCI 142 (401)
T ss_dssp HHHHHHHHHHBCTTSSBBSSTT--CCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCCCC--CCcchHHHHHHHHHHHH
Confidence 4678999999999999996531 12358899999999864
No 11
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=90.84 E-value=0.15 Score=36.74 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=21.4
Q ss_pred CCCchHHHHHHHhhcCCCCCcCCC
Q 039084 37 APQFPSCLKWIADNQLPHGSWGDD 60 (87)
Q Consensus 37 ~p~FP~~~~wil~nQ~~DGsWg~~ 60 (87)
.+.+...++||++.|..||+||..
T Consensus 155 ~~~~~~~~~~i~scQn~DGGfg~~ 178 (325)
T d3dssb1 155 AINVEKAIEFVLSCMNFDGGFGCR 178 (325)
T ss_dssp GSCHHHHHHHHHTTBCTTSCBCSS
T ss_pred hhhHHHHHHHHHHhcCCcCCcccc
Confidence 567889999999999999999953
No 12
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=88.40 E-value=0.18 Score=33.61 Aligned_cols=35 Identities=20% Similarity=0.570 Sum_probs=27.6
Q ss_pred CchHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHHhh
Q 039084 39 QFPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALKSW 82 (87)
Q Consensus 39 ~FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~~w 82 (87)
.-.+.+.||++|+..+|+|+.. .| |.-||.||.+-
T Consensus 255 ~~~~~~~wL~~qr~~~g~w~ST-----q~----T~~al~AL~~y 289 (294)
T d1c3da_ 255 FVPPVVRWLNEQRYYGGGYGST-----QA----TFMVFQALAQY 289 (294)
T ss_dssp THHHHHHHHHHTTCCCCSTTCH-----HH----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHcccCCCCCccH-----HH----HHHHHHHHHHH
Confidence 3456899999999999999854 33 78888888653
No 13
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=87.88 E-value=0.79 Score=31.02 Aligned_cols=45 Identities=20% Similarity=0.325 Sum_probs=29.8
Q ss_pred ccchhHhhHHhhccc---CCCCCCCCCCchHHHHHHHhhcCCCCCcCCC
Q 039084 15 GISAYDTAWVALIKN---IDGSDINAPQFPSCLKWIADNQLPHGSWGDD 60 (87)
Q Consensus 15 S~S~YDTAWVAmv~~---~~g~~~~~p~FP~~~~wil~nQ~~DGsWg~~ 60 (87)
.++.|-||.|..+=. .-+.. -....-..+.|++.+|..+|++.+.
T Consensus 78 ~~~~wlTayv~~~L~~A~~~g~~-~~~~~~~~~~~~l~~q~~~g~~~~~ 125 (326)
T d1hzfa_ 78 DSSTWLTAFVLKVLSLAQEQVGG-SPEKLQETSNWLLSQQQADGSFQDP 125 (326)
T ss_dssp CCCHHHHHHHHHHHHHHGGGTCC-CHHHHHHHHHHHGGGBCTTSCBCCS
T ss_pred CCchHHHHHHHHHHHHHHHhccc-chhhHHhHHHHHHHHhhhccccccc
Confidence 378999998865321 11211 0222446689999999999999754
No 14
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}
Probab=86.35 E-value=0.15 Score=37.73 Aligned_cols=21 Identities=10% Similarity=0.286 Sum_probs=18.4
Q ss_pred CchHHHHHHHhhcCCCCCcCC
Q 039084 39 QFPSCLKWIADNQLPHGSWGD 59 (87)
Q Consensus 39 ~FP~~~~wil~nQ~~DGsWg~ 59 (87)
-+-..++|||.-|.+||+|+.
T Consensus 90 A~~Rgi~~LL~~Q~~nGGWpq 110 (324)
T d1gxma_ 90 AVRKAANFLVNSQYSTGALPQ 110 (324)
T ss_dssp HHHHHHHHHHHHCCTTSCCBS
T ss_pred HHHHHHHHHHhhccCCCCccc
Confidence 356788999999999999985
No 15
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}
Probab=84.84 E-value=0.55 Score=35.49 Aligned_cols=21 Identities=19% Similarity=0.597 Sum_probs=18.3
Q ss_pred CchHHHHHHHhhcCCCCCcCC
Q 039084 39 QFPSCLKWIADNQLPHGSWGD 59 (87)
Q Consensus 39 ~FP~~~~wil~nQ~~DGsWg~ 59 (87)
.+-.+++||+..|.+||+|..
T Consensus 176 a~~~~~~~ll~~Q~~~Ggwpq 196 (408)
T d1r76a_ 176 AALKGIEYLLASQFPNGGWPQ 196 (408)
T ss_dssp HHHHHHHHHHHHSCTTSCCBS
T ss_pred HHHHHHHHHHHhhCCCCCccc
Confidence 355689999999999999984
No 16
>d1rk8c_ b.72.3.1 (C:) Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=77.60 E-value=0.071 Score=27.88 Aligned_cols=15 Identities=27% Similarity=0.820 Sum_probs=12.2
Q ss_pred HHHhhcCCCCCcCCC
Q 039084 46 WIADNQLPHGSWGDD 60 (87)
Q Consensus 46 wil~nQ~~DGsWg~~ 60 (87)
||-..|++||.|.-+
T Consensus 10 ~i~atqRpDGtWRK~ 24 (33)
T d1rk8c_ 10 FIPATKRPDGTWRKA 24 (33)
T ss_dssp EECCEECTTSCEECC
T ss_pred EeccccCCCCccccc
Confidence 566789999999754
No 17
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.59 E-value=2.3 Score=31.54 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.3
Q ss_pred CCCchHHHHHHHhhcCCCCCcCCC
Q 039084 37 APQFPSCLKWIADNQLPHGSWGDD 60 (87)
Q Consensus 37 ~p~FP~~~~wil~nQ~~DGsWg~~ 60 (87)
...+-..++||++-|..||+||..
T Consensus 199 ~~~~~~~~~~I~scQ~~dGGfg~~ 222 (401)
T d2h6fb1 199 PDLFEGTAEWIARCQNWEGGIGGV 222 (401)
T ss_dssp TTTTTTHHHHHHHHBCTTSSBCSS
T ss_pred HHHHHHHHHHHHHccCCCCCccCC
Confidence 345678999999999999999944
No 18
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=71.33 E-value=2.4 Score=30.90 Aligned_cols=40 Identities=8% Similarity=-0.032 Sum_probs=27.0
Q ss_pred CCCchHHHHHHHhhcCCCCCcCCCC----ccchhHHHHHHHHHH
Q 039084 37 APQFPSCLKWIADNQLPHGSWGDDK----VFLAHDRLINTLACI 76 (87)
Q Consensus 37 ~p~FP~~~~wil~nQ~~DGsWg~~~----~~~~~d~ll~TLAcv 76 (87)
......+++||++-|..||++|... +.-...+-+.+|+-+
T Consensus 173 ~~~~~~~~~~I~scq~~DGGfg~~p~~EsHgg~TfCavasL~ll 216 (346)
T d1n4qb_ 173 GMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLM 216 (346)
T ss_dssp GSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCcCCCccCCCCCCccHHHHHHHHHHHHHh
Confidence 3447799999999999999999531 222344455555444
No 19
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.18 E-value=1.5 Score=28.78 Aligned_cols=17 Identities=6% Similarity=0.040 Sum_probs=14.6
Q ss_pred HHHHHHHhhcCCCCCcC
Q 039084 42 SCLKWIADNQLPHGSWG 58 (87)
Q Consensus 42 ~~~~wil~nQ~~DGsWg 58 (87)
+.++=|++.|++||+||
T Consensus 58 ~gi~rl~~~Q~~dGgf~ 74 (294)
T d1c3da_ 58 KGYTQQLAFRQPSSAFA 74 (294)
T ss_dssp HHHHHHHTTBCTTSCBC
T ss_pred HHHHHHHHhcCCCCCcc
Confidence 45777899999999997
No 20
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}
Probab=45.14 E-value=2.9 Score=31.34 Aligned_cols=18 Identities=11% Similarity=0.171 Sum_probs=15.6
Q ss_pred chHHHHHHHhhcCCCCCc
Q 039084 40 FPSCLKWIADNQLPHGSW 57 (87)
Q Consensus 40 FP~~~~wil~nQ~~DGsW 57 (87)
|-..++||++.|.+||+|
T Consensus 247 ~~rgi~~ll~~Q~~~gg~ 264 (408)
T d1r76a_ 247 TNAAIHCIVETQVVQDGK 264 (408)
T ss_dssp HHHHHHHHHHHSCEETTE
T ss_pred HHHHHHHHHHHhcccCCC
Confidence 456899999999999993
No 21
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}
Probab=44.99 E-value=2.9 Score=30.50 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=15.0
Q ss_pred chHHHHHHHhhcCCCCC
Q 039084 40 FPSCLKWIADNQLPHGS 56 (87)
Q Consensus 40 FP~~~~wil~nQ~~DGs 56 (87)
|-..++||++.|..|||
T Consensus 163 ~~Rgi~~lL~~Q~~~gg 179 (324)
T d1gxma_ 163 VTKGTDYILKAQWKQNG 179 (324)
T ss_dssp HHHHHHHHHHHSCEETT
T ss_pred HHHHHHHHHHhhcccCC
Confidence 45789999999999988
No 22
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.83 E-value=10 Score=26.80 Aligned_cols=32 Identities=16% Similarity=0.031 Sum_probs=25.7
Q ss_pred hHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHH
Q 039084 41 PSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACI 76 (87)
Q Consensus 41 P~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcv 76 (87)
-.|.+||+..|...|.+|-. +....+|.|||-
T Consensus 218 ~~a~~~i~~ede~t~~~glg----~i~~~lnml~~~ 249 (279)
T d1w6ka2 218 QKLYEHIVADDRFTKSISIG----PISKTINMLVRW 249 (279)
T ss_dssp HHHHHHHHHHHHHHTTCCSS----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccc----chHHHHHHHHHH
Confidence 47899999888888888855 377788988884
No 23
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.69 E-value=16 Score=20.06 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=19.0
Q ss_pred HhhHHhhcccCCCCCCCCCCchHHHHHHHhhcCCC
Q 039084 20 DTAWVALIKNIDGSDINAPQFPSCLKWIADNQLPH 54 (87)
Q Consensus 20 DTAWVAmv~~~~g~~~~~p~FP~~~~wil~nQ~~D 54 (87)
+.|-.|+.-.-++ .-++++||++|+.++
T Consensus 24 ~~a~~AL~~~~~~-------~e~A~~wL~~~~~~~ 51 (63)
T d1wjia_ 24 EASRQALMDNGNN-------LEAALNVLLTSNKQK 51 (63)
T ss_dssp HHHHHHHHHTTSC-------HHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHhCCC-------HHHHHHHHHHCCCCC
Confidence 4455666654333 449999999998764
No 24
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.10 E-value=17 Score=19.22 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=11.0
Q ss_pred HHHHHHHhhcCCC
Q 039084 42 SCLKWIADNQLPH 54 (87)
Q Consensus 42 ~~~~wil~nQ~~D 54 (87)
.+++||++|+...
T Consensus 33 ~A~~Wl~~h~~d~ 45 (51)
T d2crna1 33 EALAWLHDHCNDP 45 (51)
T ss_dssp HHHHHHHHHSSST
T ss_pred HHHHHHHHcCCCc
Confidence 8999999998653
No 25
>d2af7a1 a.152.1.2 (A:1-119) Gamma-carboxymuconolactone decarboxylase, CMD {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.82 E-value=72 Score=18.76 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=27.8
Q ss_pred chHHHHHHHhhcCCCCCcCCCCccchhHHHHHHHHHHHHHH
Q 039084 40 FPSCLKWIADNQLPHGSWGDDKVFLAHDRLINTLACIVALK 80 (87)
Q Consensus 40 FP~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TLAcvlAL~ 80 (87)
.|+-.+|+.+.--.+ -|+.+. ....+|-+-|+|++.|+.
T Consensus 30 ~p~~~~~~~~~~fg~-~~~r~~-Ld~k~r~Li~la~l~a~g 68 (119)
T d2af7a1 30 APDLARFVAEFAYGD-VYSRGV-LDLKTRELLTLAALTVLR 68 (119)
T ss_dssp CHHHHHHHHHTCCCC-CCTCCS-SCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhhh-hcCCCC-CCHHHHHHHHHHHHHhCC
Confidence 466566666654333 477664 678999999999999874
Done!