BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039087
(414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 119/202 (58%), Gaps = 7/202 (3%)
Query: 151 NRFSGTVP-ETFKDLTSLQELDLSNNQFSGPFPL-VTLYIPNLVYLDLRFNSFSGP-LPQ 207
N FSG +P +T + L+ LDLS N+FSG P +T +L+ LDL N+FSGP LP
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 208 DLFNKK--LDAIFVNNNQFSGELPQNLGNSPASV-INLANNRLSGSIPASFGITNSKLKE 264
N K L +++ NN F+G++P L N V ++L+ N LSG+IP+S G + SKL++
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRD 446
Query: 265 ILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGEL 324
+ N L G IP+ + ++ + FN L G +P +S +++ ++L++N+L+GE+
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 325 PDLVCSLRTLMNLTVAFNFFSG 346
P + L L L ++ N FSG
Sbjct: 507 PKWIGRLENLAILKLSNNSFSG 528
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 130/255 (50%), Gaps = 32/255 (12%)
Query: 122 IDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPF 181
+D++ L G+ + +S T++ LL++++N+F G +P L SLQ L L+ N+F+G
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 285
Query: 182 P-LVTLYIPNLVYLDLR------------------------FNSFSGPLPQD--LFNKKL 214
P ++ L LDL N+FSG LP D L + L
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345
Query: 215 DAIFVNNNQFSGELPQNLGNSPASVI--NLANNRLSGSI-PASFGITNSKLKEILFLNNQ 271
+ ++ N+FSGELP++L N AS++ +L++N SG I P + L+E+ NN
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Query: 272 LTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSL 331
TG IP + SE+ +SFN L G +P ++ +S + L L N L GE+P + +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 332 RTLMNLTVAFNFFSG 346
+TL L + FN +G
Sbjct: 466 KTLETLILDFNDLTG 480
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 118/275 (42%), Gaps = 38/275 (13%)
Query: 124 LNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPL 183
L+ +L G + LS T++N + L+ NR +G +P+ L +L L LSNN FSG P
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 184 VTLYIPNLVYLDLRFNSFSGPLPQDLFNK--KLDAIFVNNNQFSGELPQNLGNSPASVIN 241
+L++LDL N F+G +P +F + K+ A F+ ++ + N
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 242 LAN---------NRLSGSIPAS-----FGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQ 287
L NRLS P + +G S F NN M
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP----TFDNN-------------GSMM 635
Query: 288 VFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGF 347
D+S+N L G++P I M + ILNL HN +SG +PD V LR L L ++ N G
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 348 SQECARLLIRNVGFDFSANCIPGRDMQRPQPDCSQ 382
+ L D S N + G P P+ Q
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSG-----PIPEMGQ 725
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 124/296 (41%), Gaps = 49/296 (16%)
Query: 124 LNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPL 183
L + G + LS +++ LHL+ N SGT+P + L+ L++L L N G P
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 184 VTLYIPNLVYLDLRFNSFSGPLPQDLFN-KKLDAIFVNNNQFSGELPQNLGN-SPASVIN 241
+Y+ L L L FN +G +P L N L+ I ++NN+ +GE+P+ +G +++
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 242 LANNRLSGSIPASFGITNSKL-------------------------------KEILFLNN 270
L+NN SG+IPA G S + K +++ N
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580
Query: 271 --------------QLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLA 316
+ G E + S +++ GH T + L+++
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 317 HNQLSGELPDLVCSLRTLMNLTVAFNFFSG-FSQECARLLIRNVGFDFSANCIPGR 371
+N LSG +P + S+ L L + N SG E L N+ D S+N + GR
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI-LDLSSNKLDGR 695
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 141/310 (45%), Gaps = 35/310 (11%)
Query: 78 LQAWKSAITDDPLRILDTWVGD-NVCSYKGIFCSDLGAQGPVVAGIDLNHANLQ---GNL 133
L ++K + D +L W + N C++ G+ C D V IDL+ L +
Sbjct: 17 LISFKDVLPDK--NLLPDWSSNKNPCTFDGVTCRD-----DKVTSIDLSSKPLNVGFSAV 69
Query: 134 VKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLY--IPNL 191
L LT + L L+ + +G+V FK SL LDLS N SGP +T L
Sbjct: 70 SSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128
Query: 192 VYLDLRFNS--FSGPLPQDLFNKKLDAIFVNNNQFSGE--LPQNLGNSPASVINLA--NN 245
+L++ N+ F G + L L+ + ++ N SG + L + + +LA N
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188
Query: 246 RLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTIS 305
++SG + S + L+ + +N + IP +G S +Q D+S N L G IS
Sbjct: 189 KISGDVDVSRCV---NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 244
Query: 306 CMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSG-----FSQECARLLIRNVG 360
+++++LN++ NQ G +P L L++L L++A N F+G S C L G
Sbjct: 245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTL----TG 298
Query: 361 FDFSANCIPG 370
D S N G
Sbjct: 299 LDLSGNHFYG 308
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 106 GIFCSDLGAQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLT 165
G ++G+ P + ++L H ++ G++ E+ L +N+L L++N+ G +P+ LT
Sbjct: 646 GYIPKEIGSM-PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704
Query: 166 SLQELDLSNNQFSGPFP 182
L E+DLSNN SGP P
Sbjct: 705 MLTEIDLSNNNLSGPIP 721
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 122 IDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPF 181
+D+++ L G + KE+ + + +L+L N SG++P+ DL L LDLS+N+ G
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 182 PLVTLYIPNLVYLDLRFNSFSGPLPQ-DLFNKKLDAIFVNNNQFSG 226
P + L +DL N+ SGP+P+ F A F+NN G
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 105/220 (47%), Gaps = 23/220 (10%)
Query: 119 VAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPET-FKDLTSLQELDLSNNQF 177
+A + L++ + GN+ EL + L LNTN F+GT+P FK Q ++ N
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK-----QSGKIAANFI 570
Query: 178 SGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNN------NQFSGELPQN 231
+G +YI N + + Q + +++L+ + N + G
Sbjct: 571 AGK---RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 232 LGNSPASV-INLANNRLSGSIPASFGITNSKLKEILFLN---NQLTGCIPEGVGLFSEMQ 287
N+ + + ++++ N LSG IP G + + LN N ++G IP+ VG +
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIG----SMPYLFILNLGHNDISGSIPDEVGDLRGLN 683
Query: 288 VFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDL 327
+ D+S N L G +P +S ++ + ++L++N LSG +P++
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 119/202 (58%), Gaps = 7/202 (3%)
Query: 151 NRFSGTVP-ETFKDLTSLQELDLSNNQFSGPFPL-VTLYIPNLVYLDLRFNSFSGP-LPQ 207
N FSG +P +T + L+ LDLS N+FSG P +T +L+ LDL N+FSGP LP
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 208 DLFNKK--LDAIFVNNNQFSGELPQNLGNSPASV-INLANNRLSGSIPASFGITNSKLKE 264
N K L +++ NN F+G++P L N V ++L+ N LSG+IP+S G + SKL++
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRD 443
Query: 265 ILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGEL 324
+ N L G IP+ + ++ + FN L G +P +S +++ ++L++N+L+GE+
Sbjct: 444 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Query: 325 PDLVCSLRTLMNLTVAFNFFSG 346
P + L L L ++ N FSG
Sbjct: 504 PKWIGRLENLAILKLSNNSFSG 525
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 130/255 (50%), Gaps = 32/255 (12%)
Query: 122 IDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPF 181
+D++ L G+ + +S T++ LL++++N+F G +P L SLQ L L+ N+F+G
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 282
Query: 182 P-LVTLYIPNLVYLDLR------------------------FNSFSGPLPQD--LFNKKL 214
P ++ L LDL N+FSG LP D L + L
Sbjct: 283 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 342
Query: 215 DAIFVNNNQFSGELPQNLGNSPASVI--NLANNRLSGSI-PASFGITNSKLKEILFLNNQ 271
+ ++ N+FSGELP++L N AS++ +L++N SG I P + L+E+ NN
Sbjct: 343 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 402
Query: 272 LTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSL 331
TG IP + SE+ +SFN L G +P ++ +S + L L N L GE+P + +
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 332 RTLMNLTVAFNFFSG 346
+TL L + FN +G
Sbjct: 463 KTLETLILDFNDLTG 477
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 118/275 (42%), Gaps = 38/275 (13%)
Query: 124 LNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPL 183
L+ +L G + LS T++N + L+ NR +G +P+ L +L L LSNN FSG P
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 184 VTLYIPNLVYLDLRFNSFSGPLPQDLFNK--KLDAIFVNNNQFSGELPQNLGNSPASVIN 241
+L++LDL N F+G +P +F + K+ A F+ ++ + N
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 242 LAN---------NRLSGSIPAS-----FGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQ 287
L NRLS P + +G S F NN M
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP----TFDNN-------------GSMM 632
Query: 288 VFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGF 347
D+S+N L G++P I M + ILNL HN +SG +PD V LR L L ++ N G
Sbjct: 633 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 692
Query: 348 SQECARLLIRNVGFDFSANCIPGRDMQRPQPDCSQ 382
+ L D S N + G P P+ Q
Sbjct: 693 IPQAMSALTMLTEIDLSNNNLSG-----PIPEMGQ 722
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 124/296 (41%), Gaps = 49/296 (16%)
Query: 124 LNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPL 183
L + G + LS +++ LHL+ N SGT+P + L+ L++L L N G P
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 184 VTLYIPNLVYLDLRFNSFSGPLPQDLFN-KKLDAIFVNNNQFSGELPQNLGN-SPASVIN 241
+Y+ L L L FN +G +P L N L+ I ++NN+ +GE+P+ +G +++
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 242 LANNRLSGSIPASFGITNSKL-------------------------------KEILFLNN 270
L+NN SG+IPA G S + K +++ N
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 577
Query: 271 --------------QLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLA 316
+ G E + S +++ GH T + L+++
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 637
Query: 317 HNQLSGELPDLVCSLRTLMNLTVAFNFFSG-FSQECARLLIRNVGFDFSANCIPGR 371
+N LSG +P + S+ L L + N SG E L N+ D S+N + GR
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI-LDLSSNKLDGR 692
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 141/310 (45%), Gaps = 35/310 (11%)
Query: 78 LQAWKSAITDDPLRILDTWVGD-NVCSYKGIFCSDLGAQGPVVAGIDLNHANLQ---GNL 133
L ++K + D +L W + N C++ G+ C D V IDL+ L +
Sbjct: 14 LISFKDVLPDK--NLLPDWSSNKNPCTFDGVTCRD-----DKVTSIDLSSKPLNVGFSAV 66
Query: 134 VKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLY--IPNL 191
L LT + L L+ + +G+V FK SL LDLS N SGP +T L
Sbjct: 67 SSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 125
Query: 192 VYLDLRFNS--FSGPLPQDLFNKKLDAIFVNNNQFSGE--LPQNLGNSPASVINLA--NN 245
+L++ N+ F G + L L+ + ++ N SG + L + + +LA N
Sbjct: 126 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 185
Query: 246 RLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTIS 305
++SG + S + L+ + +N + IP +G S +Q D+S N L G IS
Sbjct: 186 KISGDVDVSRCV---NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 241
Query: 306 CMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSG-----FSQECARLLIRNVG 360
+++++LN++ NQ G +P L L++L L++A N F+G S C L G
Sbjct: 242 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTL----TG 295
Query: 361 FDFSANCIPG 370
D S N G
Sbjct: 296 LDLSGNHFYG 305
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 106 GIFCSDLGAQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLT 165
G ++G+ P + ++L H ++ G++ E+ L +N+L L++N+ G +P+ LT
Sbjct: 643 GYIPKEIGSM-PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 701
Query: 166 SLQELDLSNNQFSGPFP 182
L E+DLSNN SGP P
Sbjct: 702 MLTEIDLSNNNLSGPIP 718
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 122 IDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPF 181
+D+++ L G + KE+ + + +L+L N SG++P+ DL L LDLS+N+ G
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 182 PLVTLYIPNLVYLDLRFNSFSGPLPQ-DLFNKKLDAIFVNN 221
P + L +DL N+ SGP+P+ F A F+NN
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 734
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 105/220 (47%), Gaps = 23/220 (10%)
Query: 119 VAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPET-FKDLTSLQELDLSNNQF 177
+A + L++ + GN+ EL + L LNTN F+GT+P FK Q ++ N
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK-----QSGKIAANFI 567
Query: 178 SGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNN------NQFSGELPQN 231
+G +YI N + + Q + +++L+ + N + G
Sbjct: 568 AGK---RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 624
Query: 232 LGNSPASV-INLANNRLSGSIPASFGITNSKLKEILFLN---NQLTGCIPEGVGLFSEMQ 287
N+ + + ++++ N LSG IP G + + LN N ++G IP+ VG +
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIG----SMPYLFILNLGHNDISGSIPDEVGDLRGLN 680
Query: 288 VFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDL 327
+ D+S N L G +P +S ++ + ++L++N LSG +P++
Sbjct: 681 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 102/209 (48%), Gaps = 8/209 (3%)
Query: 119 VAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFS 178
+ GI+ NL G + ++ LT ++ L++ SG +P+ + +L LD S N S
Sbjct: 83 IGGIN----NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138
Query: 179 GPFPLVTLYIPNLVYLDLRFNSFSGPLPQDL--FNKKLDAIFVNNNQFSGELPQNLGNSP 236
G P +PNLV + N SG +P F+K ++ ++ N+ +G++P N
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198
Query: 237 ASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSL 296
+ ++L+ N L G FG ++ ++I N L + + VGL + D+ N +
Sbjct: 199 LAFVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRI 256
Query: 297 MGHLPDTISCMSDIEILNLAHNQLSGELP 325
G LP ++ + + LN++ N L GE+P
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 131/298 (43%), Gaps = 17/298 (5%)
Query: 93 LDTWVGDNVC---SYKGIFCSDLGAQGPVVAGIDLNHANLQGN--LVKELSLLTDVNLLH 147
L +W+ C ++ G+ C D Q V +DL+ NL + L+ L +N L+
Sbjct: 24 LSSWLPTTDCCNRTWLGVLC-DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY 82
Query: 148 LN-TNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLP 206
+ N G +P LT L L +++ SG P I LV LD +N+ SG LP
Sbjct: 83 IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Query: 207 QDLFN-KKLDAIFVNNNQFSGELPQNLGNSPA--SVINLANNRLSGSIPASFGITNSKLK 263
+ + L I + N+ SG +P + G+ + + ++ NRL+G IP +F N L
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA--NLNLA 200
Query: 264 EILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGE 323
+ N L G G Q ++ NSL L + ++ L+L +N++ G
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGT 259
Query: 324 LPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDMQRPQPDCS 381
LP + L+ L +L V+FN G + L +V + C+ G P P C+
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG----SPLPACT 313
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 129 LQGNLVKELSL-----LTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPL 183
L NLV+++ + L +N L L NR + + F+ L+ L+EL L NN
Sbjct: 66 LSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSY 125
Query: 184 VTLYIPNLVYLDL----RFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASV 239
+P+L LDL R S + L N + + + N + ++P
Sbjct: 126 AFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLK---DIPNLTALVRLEE 182
Query: 240 INLANNRLSGSIPASF-GITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMG 298
+ L+ NRL P SF G+T+ L+++ ++ Q+ ++ ++S N+LM
Sbjct: 183 LELSGNRLDLIRPGSFQGLTS--LRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 240
Query: 299 HLPDTISCMSDIEILNLAHN 318
D + + +E ++L HN
Sbjct: 241 LPHDLFTPLHRLERVHLNHN 260
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 129 LQGNLVKELSL-----LTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPL 183
L NLV+++ + L +N L L NR + + F+ L+ L+EL L NN
Sbjct: 66 LSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSY 125
Query: 184 VTLYIPNLVYLDL----RFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASV 239
+P+L LDL R S + L N + + + N + ++P
Sbjct: 126 AFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLK---DIPNLTALVRLEE 182
Query: 240 INLANNRLSGSIPASF-GITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMG 298
+ L+ NRL P SF G+T+ L+++ ++ Q+ ++ ++S N+LM
Sbjct: 183 LELSGNRLDLIRPGSFQGLTS--LRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 240
Query: 299 HLPDTISCMSDIEILNLAHN 318
D + + +E ++L HN
Sbjct: 241 LPHDLFTPLHRLERVHLNHN 260
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 104/255 (40%), Gaps = 27/255 (10%)
Query: 113 GAQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDL 172
G V +DL+H + + L D+ +L+L N+ + E F L +LQ L+L
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321
Query: 173 SNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDL-FNKKLDAIFVNNN-----QFSG 226
S N + +P + Y+DL+ N + Q F +KL + + +N F
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP 381
Query: 227 ELPQNL--GNS---------PASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGC 275
+P GN A++I+L+ NRL F + L+ ++ N+ + C
Sbjct: 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441
Query: 276 I--------PEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDL 327
P LF + +++ + + D +S +++L L HN L+ P +
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCW--DVFEGLSHLQVLYLNHNYLNSLPPGV 499
Query: 328 VCSLRTLMNLTVAFN 342
L L L++ N
Sbjct: 500 FSHLTALRGLSLNSN 514
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 39/246 (15%)
Query: 117 PVVAGIDL--NH-ANLQGNLVKELSLLTDVNLLH--LNTNRFSGTVPETF---KDLTSLQ 168
P VA IDL NH A +Q K L L ++L L T F ++P+ F L +L
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP 397
Query: 169 ELDL-------SNNQFSG-PFPLVTLYIPNLVYLDL---RFNSFSG-PLPQDLFNKKLDA 216
+++L S N+ L +P+L L L RF+S SG P + N L+
Sbjct: 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE--NPSLEQ 455
Query: 217 IFVNNNQ----FSGELPQNL--GNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNN 270
+F+ N + EL ++ G S V+ L +N L+ P F + L+ + +N
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA-LRGLSLNSN 514
Query: 271 QLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCS 330
+LT + L + +++ D+S N L+ PD +S +L++ HN+ E C
Sbjct: 515 RLT--VLSHNDLPANLEILDISRNQLLAPNPDVFVSLS---VLDITHNKFICE-----CE 564
Query: 331 LRTLMN 336
L T +N
Sbjct: 565 LSTFIN 570
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 8/157 (5%)
Query: 128 NLQGNLVKELSLLT---DVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLV 184
+L NL+ SL T L LN +R T + L L LDLS+NQ PL+
Sbjct: 37 HLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLL 95
Query: 185 TLYIPNLVYLDLRFNSFSG-PLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPA-SVINL 242
+P L LD+ FN + PL +L +++ N+ P L +P ++L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 243 ANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEG 279
ANN+L+ +PA L +L N L IP+G
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKG 190
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQ 176
PV+ +DL+H LQ +L L + +L ++ NR + + L LQEL L N+
Sbjct: 77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 177 FSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFN--KKLDAIFVNNNQF 224
P + P L L L N + LP L N + LD + + N
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 8/157 (5%)
Query: 128 NLQGNLVKELSLLT---DVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLV 184
+L NL+ SL T L LN +R T + L L LDLS+NQ PL+
Sbjct: 37 HLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLL 95
Query: 185 TLYIPNLVYLDLRFNSFSG-PLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPA-SVINL 242
+P L LD+ FN + PL +L +++ N+ P L +P ++L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 243 ANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEG 279
ANN+L+ +PA L +L N L IP+G
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKG 190
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQ 176
PV+ +DL+H LQ +L L + +L ++ NR + + L LQEL L N+
Sbjct: 77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 177 FSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFN--KKLDAIFVNNNQF 224
P + P L L L N + LP L N + LD + + N
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 8/157 (5%)
Query: 128 NLQGNLVKELSLLT---DVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLV 184
+L NL+ SL T L LN +R T + L L LDLS+NQ PL+
Sbjct: 37 HLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLL 95
Query: 185 TLYIPNLVYLDLRFNSFSG-PLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPA-SVINL 242
+P L LD+ FN + PL +L +++ N+ P L +P ++L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 243 ANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEG 279
ANN+L+ +PA L +L N L IP+G
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKG 190
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 117 PVVAGIDLNHANLQGN--LVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSN 174
PV+ +DL+H LQ L + L LT +L ++ NR + + L LQEL L
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALT---VLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 175 NQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFN--KKLDAIFVNNNQF 224
N+ P + P L L L N + LP L N + LD + + N
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 8/157 (5%)
Query: 128 NLQGNLVKELSLLT---DVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLV 184
+L NL+ SL T L LN +R T + L L LDLS+NQ PL+
Sbjct: 37 HLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLL 95
Query: 185 TLYIPNLVYLDLRFNSFSG-PLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPA-SVINL 242
+P L LD+ FN + PL +L +++ N+ P L +P ++L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 243 ANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEG 279
ANN+L+ +PA L +L N L IP+G
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKG 190
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 117 PVVAGIDLNHANLQGN--LVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSN 174
PV+ +DL+H LQ L + L LT +L ++ NR + + L LQEL L
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALT---VLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 175 NQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFN--KKLDAIFVNNNQF 224
N+ P + P L L L N + LP L N + LD + + N
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNGLENLDTLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 80/187 (42%), Gaps = 11/187 (5%)
Query: 100 NVCSYKGIFCS--DLGAQGPVVAGIDLNHANLQGNLVKELSLLT---DVNLLHLNTNRFS 154
V S+ + C DL A P + D +L NL+ SL T L LN +R
Sbjct: 8 KVASHLEVNCDKRDLTALPPDLPK-DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCE 66
Query: 155 GTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSG-PLPQDLFNKK 213
T + L L LDLS+NQ PL+ +P L LD+ FN + PL +
Sbjct: 67 LTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 214 LDAIFVNNNQFSGELPQNLGNSPA-SVINLANNRLSGSIPASFGITNSKLKEILFLNNQL 272
L +++ N+ P L +P ++LANN L+ +PA L +L N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Query: 273 TGCIPEG 279
IP+G
Sbjct: 185 Y-TIPKG 190
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 80/187 (42%), Gaps = 11/187 (5%)
Query: 100 NVCSYKGIFCS--DLGAQGPVVAGIDLNHANLQGNLVKELSLLT---DVNLLHLNTNRFS 154
V S+ + C DL A P + D +L NL+ SL T L LN +R
Sbjct: 8 KVASHLEVNCDKRDLTALPPDLPK-DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCE 66
Query: 155 GTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSG-PLPQDLFNKK 213
T + L L LDLS+NQ PL+ +P L LD+ FN + PL +
Sbjct: 67 LTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 214 LDAIFVNNNQFSGELPQNLGNSPA-SVINLANNRLSGSIPASFGITNSKLKEILFLNNQL 272
L +++ N+ P L +P ++LANN L+ +PA L +L N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
Query: 273 TGCIPEG 279
IP+G
Sbjct: 185 Y-TIPKG 190
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 128 NLQGNLVKELSLLT---DVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLV 184
+L NL+ SL T L LN +R T + L L LDLS+NQ PL+
Sbjct: 37 HLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-LPLL 95
Query: 185 TLYIPNLVYLDLRFNSFSG-PLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPA-SVINL 242
+P L LD+ FN + PL +L +++ N+ P L +P ++L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 243 ANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEG 279
ANN L+ +PA L +L N L IP+G
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKG 190
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 117 PVVAGIDLNHANLQGN--LVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSN 174
PV+ +DL+H LQ L + L LT +L ++ NR + + L LQEL L
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALT---VLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 175 NQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFN--KKLDAIFVNNNQF 224
N+ P + P L L L N+ + LP L N + LD + + N
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 128 NLQGNLVKELSLLT---DVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLV 184
+L NL+ SL T L LN +R T + L L LDLS+NQ PL+
Sbjct: 37 HLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-LPLL 95
Query: 185 TLYIPNLVYLDLRFNSFSG-PLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPA-SVINL 242
+P L LD+ FN + PL +L +++ N+ P L +P ++L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 243 ANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEG 279
ANN L+ +PA L +L N L IP+G
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKG 190
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 117 PVVAGIDLNHANLQGN--LVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSN 174
PV+ +DL+H LQ L + L LT +L ++ NR + + L LQEL L
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALT---VLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 175 NQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFN--KKLDAIFVNNNQF 224
N+ P + P L L L N+ + LP L N + LD + + N
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 128 NLQGNLVKELSLLT---DVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLV 184
+L NL+ SL T L LN +R T + L L LDLS+NQ PL+
Sbjct: 37 HLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-LPLL 95
Query: 185 TLYIPNLVYLDLRFNSFSG-PLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPA-SVINL 242
+P L LD+ FN + PL +L +++ N+ P L +P ++L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 243 ANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEG 279
ANN L+ +PA L +L N L IP+G
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKG 190
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 117 PVVAGIDLNHANLQGN--LVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSN 174
PV+ +DL+H LQ L + L LT +L ++ NR + + L LQEL L
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALT---VLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 175 NQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFN--KKLDAIFVNNNQF 224
N+ P + P L L L N+ + LP L N + LD + + N
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 128 NLQGNLVKELSLLT---DVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLV 184
+L NL+ SL T L LN +R T + L L LDLS+NQ PL+
Sbjct: 38 HLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLL 96
Query: 185 TLYIPNLVYLDLRFNSFSG-PLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPA-SVINL 242
+P L LD+ FN + PL +L +++ N+ P L +P ++L
Sbjct: 97 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 156
Query: 243 ANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEG 279
ANN L+ +PA L +L N L IP+G
Sbjct: 157 ANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKG 191
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 117 PVVAGIDLNHANLQGN--LVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSN 174
PV+ +DL+H LQ L + L LT +L ++ NR + + L LQEL L
Sbjct: 78 PVLGTLDLSHNQLQSLPLLGQTLPALT---VLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 175 NQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFN--KKLDAIFVNNNQF 224
N+ P + P L L L N+ + LP L N + LD + + N
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL 185
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 8/163 (4%)
Query: 122 IDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPF 181
+DL L K LT + LL+LN N+ FK+L +L+ L +++N+
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 182 PLVTLYIPNLVYLDLRFNSFSGPLPQDLFNK--KLDAIFVNNNQFSGELPQNLGNSPASV 239
V + NL L L N LP +F+ KL + + N+ LP+ + + S+
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSL 159
Query: 240 --INLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGV 280
+ L NN+L +P ++LK + NNQL +PEG
Sbjct: 160 KELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKR-VPEGA 200
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 142 DVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSF 201
D L L +N+ S + F LT L+ L L++N+ + + NL L + N
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 202 SGPLPQDLFNK--KLDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFGIT 258
LP +F++ L + ++ NQ P+ + + + ++L N L S+P
Sbjct: 98 QA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDK 155
Query: 259 NSKLKEILFLNNQLTGCIPEGV-GLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAH 317
+ LKE+ NNQL +PEG +E++ + N L + +++L L
Sbjct: 156 LTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214
Query: 318 N 318
N
Sbjct: 215 N 215
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 269 NNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLS 321
+NQL P +S++ + D FNS+ P+ + +++LNL HN+LS
Sbjct: 34 HNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 297 MGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLL 355
+ H+PD + S+I +LNL HNQL P L L FN S E ++L
Sbjct: 16 LTHIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQIL 72
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 141 TDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNS 200
T +LHL N+ + P F LT L L+L+ NQ + V + L +L L N
Sbjct: 40 TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQ 99
Query: 201 FSGPLPQDLFN--KKLDAIFVNNNQFSGE 227
+P +F+ K L I++ NN + E
Sbjct: 100 LKS-IPMGVFDNLKSLTHIYLFNNPWDCE 127
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 141 TDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNS 200
TD L LN N+ + P F L +LQ+L ++N+ + V + L LDL N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 201 FSGPLPQDLFN--KKLDAIFVNNNQFSGE 227
+P+ F+ K L I++ NN + E
Sbjct: 93 LKS-IPRGAFDNLKSLTHIYLYNNPWDCE 120
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 119 VAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFS 178
+ ++ N A+L+ + L L ++N+ H F +PE F +LT+L+ LDLS+N+
Sbjct: 106 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSSNKIQ 163
Query: 179 GPF 181
+
Sbjct: 164 SIY 166
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 119 VAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFS 178
+ ++ N A+L+ + L L ++N+ H F +PE F +LT+L+ LDLS+N+
Sbjct: 107 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSSNKIQ 164
Query: 179 GPF 181
+
Sbjct: 165 SIY 167
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 13/230 (5%)
Query: 123 DLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSG-PF 181
D++ ++ ++K L ++ V L+L +RFS TF+ T LQELDL+ G P
Sbjct: 234 DIDDEDISSAMLKGLCEMS-VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPS 292
Query: 182 PLVTLYIPNLVYLDLRFNSFSGPLPQDLFN-KKLDAIFVNNNQFSGELP----QNLGNSP 236
+ L + L L L N F N L +++ N L + LGN
Sbjct: 293 GMKGLNL--LKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGN-- 348
Query: 237 ASVINLANNRLSGSIPASFGITN-SKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNS 295
++L++N + S S + N S L+ + +N+ G + ++++ D++F
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 296 LMGHLPDT-ISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFF 344
L + P + + +++LNL + L L+ L L +L + N F
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 119 VAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFS 178
+ ++ N A+L+ + L L ++N+ H F +PE F +LT+L+ LDLS+N+
Sbjct: 106 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSSNKIQ 163
Query: 179 GPF 181
+
Sbjct: 164 SIY 166
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 119 VAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFS 178
+ ++ N A+L+ + L L ++N+ H F +PE F +LT+L+ LDLS+N+
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSSNKIQ 162
Query: 179 GPF 181
+
Sbjct: 163 SIY 165
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 76 TALQ--AWKSAITD-DPLRILDTWVGDNVCSYKGIFCSDLGAQGPVVAGIDLNHANLQGN 132
T+LQ ++ + +TD PL L T ++ S K SD+ + L N Q +
Sbjct: 156 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNK---VSDISVLAKLTNLESLIATNNQIS 212
Query: 133 LVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLV 192
+ L +LT+++ L LN N+ T LT+L +LDL+NNQ S PL L L
Sbjct: 213 DITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGL--TKLT 268
Query: 193 YLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELP-QNLGNSPASVINLANNRLSGSI 251
L L N S P L + +N NQ P NL N + + L N +S
Sbjct: 269 ELKLGANQISNISPLAGL-TALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDIS 325
Query: 252 PASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIE 311
P S + +KL+ + F NN +V DVS +++ +++I
Sbjct: 326 PVS---SLTKLQRLFFYNN----------------KVSDVS----------SLANLTNIN 356
Query: 312 ILNLAHNQLSGELP 325
L+ HNQ+S P
Sbjct: 357 WLSAGHNQISDLTP 370
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 39/236 (16%)
Query: 134 VKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVY 193
V+ L+ LT +N + N+ + P K+LT L ++ ++NNQ + PL L NL
Sbjct: 64 VEYLNNLTQINFSN---NQLTDITP--LKNLTKLVDILMNNNQIADITPLANL--TNLTG 116
Query: 194 LDLRFNSFSGPLP-QDLFNKKLDAIFVNNNQFSG--------ELPQ-NLGNSPASVINLA 243
L L N + P ++L N L+ + +++N S L Q + GN + LA
Sbjct: 117 LTLFNNQITDIDPLKNLTN--LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA 174
Query: 244 N-----------NRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVS 292
N N++S I +TN L+ ++ NNQ++ P +G+ + + ++
Sbjct: 175 NLTTLERLDISSNKVS-DISVLAKLTN--LESLIATNNQISDITP--LGILTNLDELSLN 229
Query: 293 FNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFS 348
N L T++ ++++ L+LA+NQ+S P + L L L + N S S
Sbjct: 230 GNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 281
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 49/121 (40%), Gaps = 7/121 (5%)
Query: 124 LNHANLQGNLVKEL-----SLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFS 178
L+ L GN +K L LT + L LNTN+ F LT+LQ L LS NQ
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Query: 179 GPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPAS 238
+ L + L N F + L+ + I N+N+ QNL SP
Sbjct: 169 SVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQW--IRENSNKVKDGTGQNLHESPDG 226
Query: 239 V 239
V
Sbjct: 227 V 227
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 140 LTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPL-VTLYIPNLVYLDLRF 198
LT + L+L+ N+ F DLT L L L+NNQ + PL V ++ L L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116
Query: 199 NSFSGPLPQDLFNK--KLDAIFVNNNQFSGELPQNLGNSPASV--INLANNRLSGSIPAS 254
N LP +F++ KL + +N NQ +P + ++ ++L+ N+L S+P
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHG 173
Query: 255 FGITNSKLKEILFLNNQLTGCIPEGVGLFSEM-----QVFDVSFNSLMGHLPDTISCMSD 309
KL+ I NQ E + L + +V D + +L PD ++C
Sbjct: 174 AFDRLGKLQTITLFGNQFDCSRCETLYLSQWIRENSNKVKDGTGQNLH-ESPDGVTCSDG 232
Query: 310 IEILNLAHNQLSGELP 325
+ + + L E P
Sbjct: 233 KVVRTVTNETLKYECP 248
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 76 TALQ--AWKSAITD-DPLRILDTWVGDNVCSYKGIFCSDLGAQGPVVAGIDLNHANLQGN 132
T+LQ ++ + +TD PL L T ++ S K SD+ + L N Q +
Sbjct: 155 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNK---VSDISVLAKLTNLESLIATNNQIS 211
Query: 133 LVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLV 192
+ L +LT+++ L LN N+ T LT+L +LDL+NNQ S PL L L
Sbjct: 212 DITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLT--KLT 267
Query: 193 YLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELP-QNLGNSPASVINLANNRLSGSI 251
L L N S P L + +N NQ P NL N + + L N +S
Sbjct: 268 ELKLGANQISNISPLAGL-TALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDIS 324
Query: 252 PASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIE 311
P S + +KL+ + F NN +V DVS +++ +++I
Sbjct: 325 PVS---SLTKLQRLFFANN----------------KVSDVS----------SLANLTNIN 355
Query: 312 ILNLAHNQLSGELP 325
L+ HNQ+S P
Sbjct: 356 WLSAGHNQISDLTP 369
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 39/236 (16%)
Query: 134 VKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVY 193
V+ L+ LT +N + N+ + P K+LT L ++ ++NNQ + PL L NL
Sbjct: 63 VEYLNNLTQINFSN---NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT--NLTG 115
Query: 194 LDLRFNSFSGPLP-QDLFNKKLDAIFVNNNQFSG--------ELPQ-NLGNSPASVINLA 243
L L N + P ++L N L+ + +++N S L Q + GN + LA
Sbjct: 116 LTLFNNQITDIDPLKNLTN--LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA 173
Query: 244 N-----------NRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVS 292
N N++S I +TN L+ ++ NNQ++ P +G+ + + ++
Sbjct: 174 NLTTLERLDISSNKVS-DISVLAKLTN--LESLIATNNQISDITP--LGILTNLDELSLN 228
Query: 293 FNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFS 348
N L T++ ++++ L+LA+NQ+S P + L L L + N S S
Sbjct: 229 GNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 280
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 119 VAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFS 178
+ ++ N A+L+ + L L ++N+ H F +PE F +LT+L+ LDLS+N+
Sbjct: 107 LVALETNLASLENFPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSSNKIQ 164
Query: 179 GPF 181
+
Sbjct: 165 SIY 167
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 141 TDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNS 200
T +L+L NR + P F LT L LDL NNQ + V + L L L N
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 201 FSGPLPQDLFN--KKLDAIFVNNNQF 224
+P+ F+ + L I++ NN +
Sbjct: 90 LKS-IPRGAFDNLRSLTHIWLLNNPW 114
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 83/193 (43%), Gaps = 37/193 (19%)
Query: 134 VKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVY 193
+ L +LT+++ L LN N+ T LT+L +LDL+NNQ S PL L L
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGL--TKLTE 265
Query: 194 LDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELP-QNLGNSPASVINLANNRLSGSIP 252
L L N S P L + +N NQ P NL N + + L N +S P
Sbjct: 266 LKLGANQISNISPLAGL-TALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISP 322
Query: 253 ASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEI 312
S + +KL+ + F NN +V DVS +++ +++I
Sbjct: 323 VS---SLTKLQRLFFYNN----------------KVSDVS----------SLANLTNINW 353
Query: 313 LNLAHNQLSGELP 325
L+ HNQ+S P
Sbjct: 354 LSAGHNQISDLTP 366
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 119 VAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFS 178
+ ++ N A+L+ + L L ++N+ H F +PE F +LT+L+ LDLS+N+
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSSNKIQ 162
Query: 179 GPF 181
+
Sbjct: 163 SIY 165
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 83/193 (43%), Gaps = 37/193 (19%)
Query: 134 VKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVY 193
+ L +LT+++ L LN N+ T LT+L +LDL+NNQ S PL L L
Sbjct: 209 ITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGL--TKLTE 264
Query: 194 LDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELP-QNLGNSPASVINLANNRLSGSIP 252
L L N S P L + +N NQ P NL N + + L N +S P
Sbjct: 265 LKLGANQISNISPLAGL-TALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISP 321
Query: 253 ASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEI 312
S + +KL+ + F NN +V DVS +++ +++I
Sbjct: 322 VS---SLTKLQRLFFYNN----------------KVSDVS----------SLANLTNINW 352
Query: 313 LNLAHNQLSGELP 325
L+ HNQ+S P
Sbjct: 353 LSAGHNQISDLTP 365
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 109/236 (46%), Gaps = 39/236 (16%)
Query: 134 VKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVY 193
V+ L+ LT +N + N+ + P K+LT L ++ ++NNQ + PL L NL
Sbjct: 59 VEYLNNLTQINFSN---NQLTDITP--LKNLTKLVDILMNNNQIADITPLANL--TNLTG 111
Query: 194 LDLRFNSFSGPLP-QDLFNKKLDAIFVNNNQFSG--------ELPQ-NLGNSPASVINLA 243
L L N + P ++L N L+ + +++N S L Q N GN + LA
Sbjct: 112 LTLFNNQITDIDPLKNLTN--LNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLA 169
Query: 244 N-----------NRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVS 292
N N++S I +TN L+ ++ NNQ++ P +G+ + + ++
Sbjct: 170 NLTTLERLDISSNKVS-DISVLAKLTN--LESLIATNNQISDITP--LGILTNLDELSLN 224
Query: 293 FNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFS 348
N L T++ ++++ L+LA+NQ+S P + L L L + N S S
Sbjct: 225 GNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 276
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 30/219 (13%)
Query: 143 VNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSF- 201
V ++L +RFS TF+ T +QELDL+ +G P + +L L L NSF
Sbjct: 255 VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFD 313
Query: 202 --------SGPLPQDLFNK----KLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSG 249
S P +DL+ K KLD + L N ++L+++ +
Sbjct: 314 QLCQINAASFPSLRDLYIKGNMRKLD--------LGTRCLEKLEN--LQKLDLSHSDIEA 363
Query: 250 SIPASFGITNSKLKEILFLN---NQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDT-IS 305
S + + N L+ + +LN N+ G + ++++ DV+F L P +
Sbjct: 364 SDCCNLQLKN--LRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQ 421
Query: 306 CMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFF 344
+ + +LNL+H L L+ L+ L +L + N F
Sbjct: 422 NLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSF 460
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 140 LTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPL-VTLYIPNLVYLDLRF 198
LT + L+L+ N+ F DLT L L L+NNQ + PL V ++ L L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116
Query: 199 NSFSGPLPQDLFNK--KLDAIFVNNNQFSGELPQNLGNSPASV--INLANNRLSGSIPAS 254
N LP +F++ KL + +N NQ +P + ++ ++L+ N+L S+P
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHG 173
Query: 255 FGITNSKLKEILFLNNQ 271
KL+ I NQ
Sbjct: 174 AFDRLGKLQTITLFGNQ 190
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 49/121 (40%), Gaps = 7/121 (5%)
Query: 124 LNHANLQGNLVKEL-----SLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFS 178
L+ L GN +K L LT + L LNTN+ F LT+LQ L LS NQ
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Query: 179 GPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPAS 238
+ L + L N F + L+ + I N+N+ QNL SP
Sbjct: 169 SVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQW--IRENSNKVKDGTGQNLHESPDG 226
Query: 239 V 239
V
Sbjct: 227 V 227
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 83/193 (43%), Gaps = 37/193 (19%)
Query: 134 VKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVY 193
+ L +LT+++ L LN N+ T LT+L +LDL+NNQ S PL L L
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGL--TKLTE 265
Query: 194 LDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELP-QNLGNSPASVINLANNRLSGSIP 252
L L N S P L + +N NQ P NL N + + L N +S P
Sbjct: 266 LKLGANQISNISPLAGL-TALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISP 322
Query: 253 ASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEI 312
S + +KL+ + F NN +V DVS +++ +++I
Sbjct: 323 VS---SLTKLQRLFFYNN----------------KVSDVS----------SLANLTNINW 353
Query: 313 LNLAHNQLSGELP 325
L+ HNQ+S P
Sbjct: 354 LSAGHNQISDLTP 366
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 111/235 (47%), Gaps = 36/235 (15%)
Query: 134 VKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVY 193
V+ L+ LT +N + N+ + P K+LT L ++ ++NNQ + PL L NL
Sbjct: 59 VEYLNNLTQINFSN---NQLTDITP--LKNLTKLVDILMNNNQIADITPLANL--TNLTG 111
Query: 194 LDLRFNSFSGPLP-QDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIP 252
L L N + P ++L N L+ + +++N S ++ G + +N ++N+++ P
Sbjct: 112 LTLFNNQITDIDPLKNLTN--LNRLELSSNTIS-DISALSGLTSLQQLNFSSNQVTDLKP 168
Query: 253 AS-------FGITNSKLKEILFL------------NNQLTGCIPEGVGLFSEMQVFDVSF 293
+ I+++K+ +I L NNQ++ P +G+ + + ++
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 226
Query: 294 NSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFS 348
N L T++ ++++ L+LA+NQ+S P + L L L + N S S
Sbjct: 227 NQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 277
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 119 VAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFS 178
+ ++ N A+L+ + L L ++N+ H F +PE F +LT+L+ LDLS+N+
Sbjct: 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSSNKIQ 186
Query: 179 GPF 181
+
Sbjct: 187 SIY 189
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 119 VAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFS 178
+ ++ N A+L+ + L L ++N+ H F +PE F +LT+L+ LDLS+N+
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSSNKIQ 162
Query: 179 GPF 181
+
Sbjct: 163 SIY 165
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 32/233 (13%)
Query: 146 LHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTL-YIPNLVYLDLRFNSFSGP 204
L ++ N +TF+ TSLQ L LS+N+ + V L IP+L + ++ +N S
Sbjct: 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH----VDLSLIPSLFHANVSYNLLST- 206
Query: 205 LPQDLFNKKLDAIFVNNNQFSG---------ELPQN-------LGNSPASV-INLANNRL 247
L + ++LDA + N G +L N L N P V ++L+ N L
Sbjct: 207 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL 266
Query: 248 SGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCM 307
+ F + +L+ + NN+L G + + ++V D+S N L+ H+
Sbjct: 267 EKIMYHPF-VKMQRLERLYISNNRLVALNLYGQPIPT-LKVLDLSHNHLL-HVERNQPQF 323
Query: 308 SDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVG 360
+E L L HN + + + + TL NLT++ N + S R L RNV
Sbjct: 324 DRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHNDWDCNS---LRALFRNVA 370
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 34/208 (16%)
Query: 140 LTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDL--- 196
L +N L L N + F+ L+ L+EL L NN +P+L+ LDL
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181
Query: 197 -RFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASF 255
+ S + LFN K + + N + L +G + ++ N P SF
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG---LEELEMSGNHFPEIRPGSF 238
Query: 256 -GITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILN 314
G+ S LK++ +N+Q++ E FD ++ + LN
Sbjct: 239 HGL--SSLKKLWVMNSQVS---------LIERNAFD---------------GLASLVELN 272
Query: 315 LAHNQLSGELPDLVCSLRTLMNLTVAFN 342
LAHN LS DL LR L+ L + N
Sbjct: 273 LAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 114 AQGPVVAGIDLNHANLQGNLVKE---LSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQEL 170
++G +L + NL +K+ L+ L + L ++ N F P +F L+SL++L
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247
Query: 171 DLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLF 210
+ N+Q S + +LV L+L N+ S LP DLF
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLF 286
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 103/233 (44%), Gaps = 32/233 (13%)
Query: 146 LHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTL-YIPNLVYLDLRFNSFSGP 204
L ++ N +TF+ TSLQ L LS+N+ + V L IP+L + ++ +N S
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH----VDLSLIPSLFHANVSYNLLST- 200
Query: 205 LPQDLFNKKLDAIFVNNNQFSG---------ELPQN-------LGNSPASV-INLANNRL 247
L + ++LDA + N G +L N L N P V ++L+ N L
Sbjct: 201 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL 260
Query: 248 SGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCM 307
+ F + +L+ + NN+L G + ++V D+S N L+ H+
Sbjct: 261 EKIMYHPF-VKMQRLERLYISNNRLVALNLYGQPI-PTLKVLDLSHNHLL-HVERNQPQF 317
Query: 308 SDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVG 360
+E L L HN + + + + TL NLT++ N + S R L RNV
Sbjct: 318 DRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHNDWDCNS---LRALFRNVA 364
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 83/193 (43%), Gaps = 37/193 (19%)
Query: 134 VKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVY 193
+ L +LT+++ L LN N+ T LT+L +LDL+NNQ S PL L L
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGL--TKLTE 265
Query: 194 LDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELP-QNLGNSPASVINLANNRLSGSIP 252
L L N S P L + +N NQ P NL N + + L N +S P
Sbjct: 266 LKLGANQISNISPLAGL-TALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISP 322
Query: 253 ASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEI 312
S + +KL+ + F NN +V DVS +++ +++I
Sbjct: 323 VS---SLTKLQRLFFSNN----------------KVSDVS----------SLANLTNINW 353
Query: 313 LNLAHNQLSGELP 325
L+ HNQ+S P
Sbjct: 354 LSAGHNQISDLTP 366
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 141 TDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNS 200
T +L+L N+ + P F LT L LDL NNQ + V + L L L N
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 201 FSGPLPQDLFN--KKLDAIFVNNNQF 224
+P+ F+ K L I++ NN +
Sbjct: 98 LKS-IPRGAFDNLKSLTHIWLLNNPW 122
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 83/193 (43%), Gaps = 37/193 (19%)
Query: 134 VKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVY 193
+ L +LT+++ L LN N+ T LT+L +LDL+NNQ S PL L L
Sbjct: 209 ITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGL--TKLTE 264
Query: 194 LDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELP-QNLGNSPASVINLANNRLSGSIP 252
L L N S P L + +N NQ P NL N + + L N +S P
Sbjct: 265 LKLGANQISNISPLAGL-TALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISP 321
Query: 253 ASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEI 312
S + +KL+ + F NN +V DVS +++ +++I
Sbjct: 322 VS---SLTKLQRLFFSNN----------------KVSDVS----------SLANLTNINW 352
Query: 313 LNLAHNQLSGELP 325
L+ HNQ+S P
Sbjct: 353 LSAGHNQISDLTP 365
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 109/236 (46%), Gaps = 39/236 (16%)
Query: 134 VKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVY 193
V+ L+ LT +N + N+ + P K+LT L ++ ++NNQ + PL L NL
Sbjct: 59 VEYLNNLTQINFSN---NQLTDITP--LKNLTKLVDILMNNNQIADITPLANL--TNLTG 111
Query: 194 LDLRFNSFSGPLP-QDLFNKKLDAIFVNNNQFSG--------ELPQ-NLGNSPASVINLA 243
L L N + P ++L N L+ + +++N S L Q N GN + LA
Sbjct: 112 LTLFNNQITDIDPLKNLTN--LNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLA 169
Query: 244 N-----------NRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVS 292
N N++S I +TN L+ ++ NNQ++ P +G+ + + ++
Sbjct: 170 NLTTLERLDISSNKVS-DISVLAKLTN--LESLIATNNQISDITP--LGILTNLDELSLN 224
Query: 293 FNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFS 348
N L T++ ++++ L+LA+NQ+S P + L L L + N S S
Sbjct: 225 GNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 276
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 141 TDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNS 200
T +L+L N+ + P F LT L LDL NNQ + V + L L L N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 201 FSGPLPQDLFN--KKLDAIFVNNNQF 224
+P+ F+ K L I++ NN +
Sbjct: 90 LKS-IPRGAFDNLKSLTHIWLLNNPW 114
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 269 NNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLS 321
+NQL +S++ DV FN++ P+ + +++LNL HN+LS
Sbjct: 44 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 269 NNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLS 321
+NQL +S++ DV FN++ P+ + +++LNL HN+LS
Sbjct: 39 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 269 NNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLS 321
+NQL +S++ DV FN++ P+ + +++LNL HN+LS
Sbjct: 34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 27/235 (11%)
Query: 161 FKDLTSLQELDLSNNQFSGPFPL-VTLYIPNLVYLDLRFNSFSGPLPQDLFN-------- 211
FK LTSL+ L L +N P L + LDL FN +DL N
Sbjct: 125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184
Query: 212 KKLDAIF---VNNNQFSGELPQN-LGNSPASVINLANNRLSGSIPASF--GITNSKLKEI 265
+L +I +N E N N+ + ++L+ N S+ F I +K++ +
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244
Query: 266 LFLNNQLTGCI--------PEGVGL----FSEMQVFDVSFNSLMGHLPDTISCMSDIEIL 313
+ N+ G P+ S ++ D+S + + L S +D+E L
Sbjct: 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL 304
Query: 314 NLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCI 368
LA N+++ + L L+ L ++ NF L + D S N I
Sbjct: 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 29/213 (13%)
Query: 119 VAGIDLNHANLQGNLVKELS--LLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQ 176
A +DL+H NL L E + LT+++ L L+ N + E F + +L+ LDLS+N
Sbjct: 41 TALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99
Query: 177 FSG----------PFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSG 226
++ LY ++V +D N+F +D+ +L ++++ NQ S
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDR--NAF-----EDM--AQLQKLYLSQNQISR 150
Query: 227 ---ELPQNLGNSPA-SVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGL 282
EL ++ P +++L++N+L + +K L+L+N C + L
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQL 210
Query: 283 FSEMQVFDVSFNSLMGHLPDTISCMSDIEILNL 315
FS Q +S S+M D + CM ++ N+
Sbjct: 211 FSHWQYRQLS--SVMDFQED-LYCMHSKKLHNI 240
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 107 IFCSDLGAQG-PVVAGIDLNHANLQGN----LVKELSLLTDVNLLHLNTNRFSGTVPETF 161
+ CS+ G + P D+ L GN + KELS + L+ L+ NR S ++F
Sbjct: 15 VRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSF 74
Query: 162 KDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFN 211
++T L L LS N+ P + +L L L N S +P+ FN
Sbjct: 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFN 123
>pdb|2YRE|A Chain A, Solution Structure Of The Zinc Finger Domains (1-87) From
Human F-Box Only Protein
Length = 100
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 10/45 (22%)
Query: 366 NCIPGRDMQRPQPDCSQIPGGGLSCLRIPALQPLVCGSLVASLEA 410
NC+ R M RP+P G+SC I PLVCG++ S +A
Sbjct: 19 NCVSRRCMTRPEP--------GISCDLIGC--PLVCGAVFHSCKA 53
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 124 LNHANLQGNLVKELS---LLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGP 180
L H NLQ N + ++ + + L L++N+ + PE F+ + + L NN+
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-L 228
Query: 181 FPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNK 212
+ NL + DLR N F +D F+K
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
>pdb|3VKF|A Chain A, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|B Chain B, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 585
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 317 HNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDMQRP 376
N + G LP+++ + NL V ++ S++C L I +P D++R
Sbjct: 75 QNIIDGRLPEVMLPVWFTNNLDVVSSYVQDQSEDCLYLNI----------YVPTEDVKRI 124
Query: 377 QPDCSQIPG 385
+C++ PG
Sbjct: 125 SKECARKPG 133
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 32/182 (17%)
Query: 142 DVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQ---------FSGPFPLVTLYIPN-- 190
++ +L L++N + F L L++LDLS+N F G L TL++
Sbjct: 56 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 115
Query: 191 --------------LVYLDLRFNSFSGPLPQDLFNK--KLDAIFVNNNQFSGELPQNL-- 232
L YL L+ N+ LP D F L +F++ N+ S +P+
Sbjct: 116 LQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRIS-SVPERAFR 173
Query: 233 GNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVS 292
G + L NR++ P +F + LF NN L+ E + +Q ++
Sbjct: 174 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLN 232
Query: 293 FN 294
N
Sbjct: 233 DN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 32/182 (17%)
Query: 142 DVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQ---------FSGPFPLVTLYIPN-- 190
++ +L L++N + F L L++LDLS+N F G L TL++
Sbjct: 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116
Query: 191 --------------LVYLDLRFNSFSGPLPQDLFNK--KLDAIFVNNNQFSGELPQNL-- 232
L YL L+ N+ LP D F L +F++ N+ S +P+
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRIS-SVPERAFR 174
Query: 233 GNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVS 292
G + L NR++ P +F + LF NN L+ E + +Q ++
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLN 233
Query: 293 FN 294
N
Sbjct: 234 DN 235
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 146 LHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPL-VTLYIPNLVYLDLRFNSFSGP 204
L LN N S P F +L +L+ L L +N+ PL V + NL LD+ N
Sbjct: 61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVIL 119
Query: 205 LP---QDLFNKKL------DAIFVNNNQFSG 226
L QDL+N K D +++++ FSG
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 284 SEMQVFDVSFNSLMGHLPD-TISCMSDIEILNLAHNQLSGEL 324
S ++ DVS NSL H D T + I +LNL+ N L+G +
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 81/183 (44%), Gaps = 8/183 (4%)
Query: 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQ 176
P + L+ ++ + ++S L+++ +L L+ NR F L+ LD+S+N+
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111
Query: 177 FSGPFPLVTLYIPNLVYLDLRFNSFSG-PLPQDLFN-KKLDAIFVNNNQFS--GELPQNL 232
+ + +L +LDL FN F P+ ++ N KL + ++ +F LP
Sbjct: 112 LQN---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168
Query: 233 GNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGC-IPEGVGLFSEMQVFDV 291
+ +++L + + G S I N+ + ++F N L + V +Q+ ++
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228
Query: 292 SFN 294
N
Sbjct: 229 KLN 231
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 180 PFPLVTLY-IPNLVYLDLRFNSFSGPLPQD-LFNKKLDAIFVNNNQFSGELPQNLGNSPA 237
P+ +V Y + + Y LR P QD F+KK AI N+ +GEL +GN +
Sbjct: 306 PYEVVQEYGLDEVRYFLLR----EVPFGQDGDFSKK--AIL---NRINGELANEIGNLYS 356
Query: 238 SVINLANNRLSGSIPAS 254
V+N+A+ L G + +
Sbjct: 357 RVVNMAHKFLGGEVSGA 373
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 109 CSDLGAQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQ 168
+DL +Q + + N N + + T++ LHL+ N+ S P KDLT L+
Sbjct: 31 VTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLE 88
Query: 169 ELDLSNNQFS 178
EL ++ N+
Sbjct: 89 ELSVNRNRLK 98
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 124 LNHANLQGNLVKELS---LLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGP 180
L H NLQ N + ++ + + L L++N+ + PE F+ + + L NN+
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-L 228
Query: 181 FPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNK 212
+ NL + DLR N F +D F+K
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 16/107 (14%)
Query: 108 FCSDLGAQGPVVAGIDLNHA----NLQGNLVKELSL-----LTDVNLLHLNTNRFSGTVP 158
F D G + DL+ N+ N + EL L+ + +L ++ NR
Sbjct: 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62
Query: 159 ETFKDLTSLQELDLSNNQFS--GPFPLVTLYIPNLVYLDLRFNSFSG 203
FK L+ LDLS+N+ P V NL +LDL FN+F
Sbjct: 63 SVFKFNQELEYLDLSHNKLVKISCHPTV-----NLKHLDLSFNAFDA 104
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 44/177 (24%)
Query: 167 LQELDLSNNQFSG----PFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNNN 222
LQEL +S+NQ + P L L+ +N+ LP + L + V++N
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLWA---------YNNQLTSLP--MLPSGLQELSVSDN 191
Query: 223 QFSGELPQNLGNSPASVINL--ANNRLSGSIPA----------------SFGITNSKLKE 264
Q + +L P+ + L NNRL+ S+PA S + S+LKE
Sbjct: 192 QLA-----SLPTLPSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTSLPVLPSELKE 245
Query: 265 ILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLS 321
++ N+LT GL S V N L LP+++ +S +NL N LS
Sbjct: 246 LMVSGNRLTSLPMLPSGLLS----LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 11/151 (7%)
Query: 195 DLRFNSFSGPLPQDLFNKKLDAIFVNNNQF-SGELPQNLGNSPASVINLANNRLSGSIPA 253
+L+ S + + Q+ N +D I NN+ S + Q L N + L N+L I A
Sbjct: 25 NLKKKSVTDAVTQNELNS-IDQIIANNSDIKSVQGIQYLPN--VRYLALGGNKLH-DISA 80
Query: 254 SFGITNSKLKEILFLNNQLTGCIPEGV-GLFSEMQVFDVSFNSLMGHLPDTI-SCMSDIE 311
+TN L ++ NQL +P GV + ++ + N L LPD + ++++
Sbjct: 81 LKELTN--LTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLT 136
Query: 312 ILNLAHNQLSGELPDLVCSLRTLMNLTVAFN 342
LNLAHNQL + L L L +++N
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,874,530
Number of Sequences: 62578
Number of extensions: 441475
Number of successful extensions: 1279
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 886
Number of HSP's gapped (non-prelim): 273
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)