Query 039087
Match_columns 414
No_of_seqs 594 out of 3722
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:10:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.8E-36 6E-41 328.5 24.3 290 72-369 28-321 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.3E-30 7.2E-35 280.9 18.9 253 116-369 139-393 (968)
3 KOG4194 Membrane glycoprotein 100.0 6.5E-29 1.4E-33 237.9 11.5 276 96-374 46-335 (873)
4 KOG4194 Membrane glycoprotein 99.9 3.7E-28 8.1E-33 232.7 3.1 256 115-372 123-408 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.2E-27 2.6E-32 230.8 -2.1 251 116-373 6-285 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.4E-26 2.9E-31 223.5 -4.0 271 116-394 77-352 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 3.3E-26 7.1E-31 210.8 -9.2 244 116-371 67-312 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 3.9E-25 8.5E-30 203.7 -8.1 258 118-387 46-308 (565)
9 PRK15370 E3 ubiquitin-protein 99.9 2.5E-21 5.5E-26 200.6 15.3 228 117-370 199-429 (754)
10 PRK15370 E3 ubiquitin-protein 99.9 1.1E-21 2.4E-26 203.2 12.7 229 117-374 178-406 (754)
11 PRK15387 E3 ubiquitin-protein 99.8 5.8E-21 1.3E-25 197.0 13.8 225 117-374 222-463 (788)
12 KOG0618 Serine/threonine phosp 99.8 9E-23 2E-27 205.3 -3.3 244 115-367 239-487 (1081)
13 PRK15387 E3 ubiquitin-protein 99.8 6.3E-20 1.4E-24 189.3 15.8 219 119-372 203-438 (788)
14 KOG4237 Extracellular matrix p 99.8 5.5E-22 1.2E-26 182.8 -0.5 264 105-369 49-359 (498)
15 PLN03210 Resistant to P. syrin 99.8 1.1E-18 2.3E-23 192.1 22.2 249 116-374 610-888 (1153)
16 KOG0618 Serine/threonine phosp 99.8 8.5E-22 1.8E-26 198.3 -4.4 226 140-374 218-470 (1081)
17 PLN03210 Resistant to P. syrin 99.8 2.7E-18 5.9E-23 188.9 21.6 245 117-374 589-864 (1153)
18 KOG0532 Leucine-rich repeat (L 99.8 5E-21 1.1E-25 183.7 -1.1 178 140-349 74-251 (722)
19 cd00116 LRR_RI Leucine-rich re 99.8 4.7E-20 1E-24 176.0 1.9 250 118-368 24-319 (319)
20 KOG4237 Extracellular matrix p 99.8 2.8E-20 6E-25 171.6 -2.0 249 121-374 50-340 (498)
21 cd00116 LRR_RI Leucine-rich re 99.8 1.4E-19 3.1E-24 172.6 2.2 252 121-372 2-294 (319)
22 KOG0617 Ras suppressor protein 99.8 1.9E-20 4.1E-25 154.5 -4.5 185 137-350 29-217 (264)
23 KOG0617 Ras suppressor protein 99.7 3E-19 6.5E-24 147.4 -2.4 160 116-282 32-194 (264)
24 KOG0532 Leucine-rich repeat (L 99.7 3.9E-19 8.4E-24 170.9 -3.8 192 117-319 75-271 (722)
25 PLN03150 hypothetical protein; 99.6 1.7E-15 3.6E-20 156.4 14.2 154 68-224 367-527 (623)
26 COG4886 Leucine-rich repeat (L 99.4 1.6E-13 3.5E-18 135.0 7.0 193 121-323 97-292 (394)
27 COG4886 Leucine-rich repeat (L 99.4 2.1E-13 4.7E-18 134.1 7.4 197 144-350 96-295 (394)
28 KOG1909 Ran GTPase-activating 99.4 2.1E-13 4.6E-18 124.8 2.0 135 235-369 157-311 (382)
29 KOG3207 Beta-tubulin folding c 99.4 1.5E-13 3.2E-18 129.1 0.9 212 138-371 118-341 (505)
30 KOG1259 Nischarin, modulator o 99.3 2.7E-13 5.9E-18 121.7 0.6 205 162-375 211-418 (490)
31 PF14580 LRR_9: Leucine-rich r 99.2 6.9E-12 1.5E-16 107.6 5.1 132 227-363 11-147 (175)
32 PLN03150 hypothetical protein; 99.2 3.2E-11 6.8E-16 124.8 10.5 109 262-370 420-529 (623)
33 KOG0531 Protein phosphatase 1, 99.2 1.5E-12 3.3E-17 128.7 -3.2 242 117-371 72-320 (414)
34 PF14580 LRR_9: Leucine-rich r 99.1 5.3E-11 1.2E-15 102.1 5.4 123 243-373 5-130 (175)
35 KOG3207 Beta-tubulin folding c 99.1 7.3E-12 1.6E-16 117.8 -1.4 189 162-372 118-317 (505)
36 KOG1909 Ran GTPase-activating 99.1 1.9E-11 4.1E-16 112.2 0.7 228 116-345 29-311 (382)
37 KOG0531 Protein phosphatase 1, 99.1 1.1E-11 2.5E-16 122.5 -1.5 223 116-349 94-322 (414)
38 KOG1259 Nischarin, modulator o 99.1 3.6E-11 7.9E-16 108.2 1.6 184 181-372 206-390 (490)
39 KOG1859 Leucine-rich repeat pr 99.0 7.5E-12 1.6E-16 124.2 -5.5 133 235-375 164-298 (1096)
40 PF13855 LRR_8: Leucine rich r 98.9 7E-10 1.5E-14 78.4 2.6 57 286-342 3-59 (61)
41 PF13855 LRR_8: Leucine rich r 98.9 8.3E-10 1.8E-14 78.0 2.7 61 308-368 1-61 (61)
42 KOG4658 Apoptotic ATPase [Sign 98.8 2.4E-09 5.2E-14 113.7 3.8 250 118-372 546-810 (889)
43 KOG4658 Apoptotic ATPase [Sign 98.5 5.1E-08 1.1E-12 103.7 2.8 227 116-347 570-809 (889)
44 KOG4579 Leucine-rich repeat (L 98.4 7.6E-09 1.7E-13 83.0 -3.9 107 261-371 54-161 (177)
45 COG5238 RNA1 Ran GTPase-activa 98.4 1.1E-07 2.3E-12 85.0 2.7 136 235-371 157-318 (388)
46 KOG1859 Leucine-rich repeat pr 98.4 5.7E-09 1.2E-13 104.2 -7.0 126 260-391 164-294 (1096)
47 KOG4579 Leucine-rich repeat (L 98.4 5.5E-08 1.2E-12 78.2 -0.8 85 138-225 50-136 (177)
48 PF08263 LRRNT_2: Leucine rich 98.3 8.9E-07 1.9E-11 57.4 4.5 39 72-110 2-43 (43)
49 KOG2120 SCF ubiquitin ligase, 98.3 2.6E-08 5.7E-13 89.9 -5.1 193 166-360 186-391 (419)
50 KOG2982 Uncharacterized conser 98.2 2.9E-07 6.4E-12 83.3 1.0 226 119-346 47-291 (418)
51 COG5238 RNA1 Ran GTPase-activa 98.2 1.7E-07 3.6E-12 83.8 -0.9 228 117-347 30-318 (388)
52 KOG2982 Uncharacterized conser 98.2 2.9E-07 6.2E-12 83.3 0.4 211 137-347 41-264 (418)
53 PF12799 LRR_4: Leucine Rich r 98.2 1.9E-06 4.2E-11 56.0 4.0 37 309-346 2-38 (44)
54 PRK15386 type III secretion pr 98.2 5.6E-06 1.2E-10 79.9 8.7 135 136-294 47-187 (426)
55 KOG2120 SCF ubiquitin ligase, 98.2 3E-08 6.4E-13 89.6 -6.6 56 143-198 187-243 (419)
56 PF12799 LRR_4: Leucine Rich r 98.1 2.1E-06 4.6E-11 55.8 3.2 36 166-202 2-37 (44)
57 KOG1644 U2-associated snRNP A' 98.1 3.1E-06 6.8E-11 72.6 5.0 123 238-365 22-149 (233)
58 PRK15386 type III secretion pr 98.0 2.8E-05 6.1E-10 75.1 8.9 138 161-319 48-188 (426)
59 KOG3665 ZYG-1-like serine/thre 97.9 5.5E-06 1.2E-10 86.2 3.4 136 235-372 122-266 (699)
60 KOG1644 U2-associated snRNP A' 97.6 8.7E-05 1.9E-09 63.9 5.4 109 262-374 21-131 (233)
61 KOG3665 ZYG-1-like serine/thre 97.4 8.2E-05 1.8E-09 77.6 2.6 136 213-350 123-268 (699)
62 KOG2739 Leucine-rich acidic nu 97.4 0.0001 2.2E-09 66.1 2.8 101 260-363 43-150 (260)
63 KOG2739 Leucine-rich acidic nu 97.0 0.0005 1.1E-08 61.7 3.1 94 276-371 35-131 (260)
64 KOG2123 Uncharacterized conser 96.9 7.9E-05 1.7E-09 67.2 -3.1 98 260-362 19-123 (388)
65 PF13306 LRR_5: Leucine rich r 96.7 0.0045 9.8E-08 50.2 6.5 82 279-364 30-111 (129)
66 KOG2123 Uncharacterized conser 96.6 7.3E-05 1.6E-09 67.4 -5.0 89 116-208 18-107 (388)
67 PF13306 LRR_5: Leucine rich r 96.6 0.0049 1.1E-07 50.0 5.7 116 236-358 13-128 (129)
68 KOG4308 LRR-containing protein 96.2 5.8E-05 1.2E-09 75.4 -9.6 88 260-347 204-305 (478)
69 KOG4308 LRR-containing protein 95.5 9.5E-05 2.1E-09 73.9 -11.2 179 119-297 89-303 (478)
70 PF00560 LRR_1: Leucine Rich R 95.4 0.0048 1E-07 33.4 0.2 12 167-178 2-13 (22)
71 KOG0473 Leucine-rich repeat pr 95.2 0.00037 8E-09 61.4 -7.1 84 116-202 41-124 (326)
72 PF00560 LRR_1: Leucine Rich R 95.1 0.0073 1.6E-07 32.6 0.5 12 310-321 2-13 (22)
73 KOG4341 F-box protein containi 94.4 0.0011 2.3E-08 63.3 -6.6 84 117-200 138-227 (483)
74 KOG0473 Leucine-rich repeat pr 94.1 0.00089 1.9E-08 59.1 -7.4 95 129-226 30-125 (326)
75 PF13504 LRR_7: Leucine rich r 93.4 0.046 1E-06 27.4 1.2 15 357-371 2-16 (17)
76 PF13504 LRR_7: Leucine rich r 93.3 0.056 1.2E-06 27.1 1.4 11 310-320 3-13 (17)
77 smart00370 LRR Leucine-rich re 93.3 0.078 1.7E-06 29.8 2.2 20 189-209 2-21 (26)
78 smart00369 LRR_TYP Leucine-ric 93.3 0.078 1.7E-06 29.8 2.2 20 189-209 2-21 (26)
79 KOG1947 Leucine rich repeat pr 92.6 0.031 6.8E-07 56.1 -0.3 109 164-272 187-307 (482)
80 smart00369 LRR_TYP Leucine-ric 92.4 0.12 2.6E-06 29.0 2.1 20 332-351 2-21 (26)
81 smart00370 LRR Leucine-rich re 92.4 0.12 2.6E-06 29.0 2.1 20 332-351 2-21 (26)
82 KOG4341 F-box protein containi 91.5 0.012 2.6E-07 56.4 -4.4 266 116-384 163-455 (483)
83 KOG1947 Leucine rich repeat pr 87.0 0.43 9.2E-06 47.9 2.6 111 235-345 188-308 (482)
84 PF13516 LRR_6: Leucine Rich r 86.3 0.32 7E-06 26.6 0.7 16 332-347 2-17 (24)
85 KOG3864 Uncharacterized conser 84.3 0.16 3.5E-06 44.2 -1.7 82 118-199 102-186 (221)
86 KOG3915 Transcription regulato 83.2 1.1 2.4E-05 43.4 3.2 16 115-130 183-198 (641)
87 smart00365 LRR_SD22 Leucine-ri 79.9 1.4 2.9E-05 24.9 1.6 13 333-345 3-15 (26)
88 smart00364 LRR_BAC Leucine-ric 78.2 1.5 3.2E-05 24.7 1.3 17 190-207 3-19 (26)
89 KOG3763 mRNA export factor TAP 77.7 1.4 3.1E-05 44.2 2.0 85 283-371 217-314 (585)
90 KOG4242 Predicted myosin-I-bin 76.3 7.2 0.00016 38.6 6.3 84 116-201 164-253 (553)
91 KOG3864 Uncharacterized conser 72.5 0.87 1.9E-05 39.8 -0.8 83 261-343 102-187 (221)
92 smart00368 LRR_RI Leucine rich 71.9 3.2 7E-05 23.6 1.8 13 166-178 3-15 (28)
93 KOG3763 mRNA export factor TAP 70.6 2.8 6.1E-05 42.1 2.1 68 306-374 216-288 (585)
94 KOG3915 Transcription regulato 66.2 4.9 0.00011 39.2 2.7 8 165-172 220-227 (641)
95 PHA00370 III attachment protei 51.5 27 0.00058 31.5 4.5 6 80-85 154-159 (297)
96 TIGR00864 PCC polycystin catio 50.2 11 0.00025 45.2 2.6 34 314-347 1-34 (2740)
97 KOG4242 Predicted myosin-I-bin 41.9 29 0.00064 34.5 3.6 15 333-347 355-369 (553)
98 TIGR00864 PCC polycystin catio 35.0 26 0.00056 42.5 2.4 32 147-178 1-32 (2740)
99 PF05887 Trypan_PARP: Procycli 34.8 13 0.00028 30.0 0.0 9 1-9 1-9 (143)
100 KOG3973 Uncharacterized conser 32.4 34 0.00074 32.4 2.3 25 29-53 357-383 (465)
101 smart00367 LRR_CC Leucine-rich 31.0 35 0.00075 18.7 1.4 12 189-200 2-13 (26)
102 PF05984 Cytomega_UL20A: Cytom 29.4 49 0.0011 24.2 2.2 20 1-20 1-20 (100)
103 KOG1456 Heterogeneous nuclear 26.6 64 0.0014 30.9 3.1 6 76-81 50-55 (494)
104 KOG3555 Ca2+-binding proteogly 25.9 36 0.00078 32.3 1.3 22 9-30 6-27 (434)
105 PHA03343 US22 family homolog; 25.6 57 0.0012 32.1 2.6 17 39-55 169-185 (578)
106 PF00740 Parvo_coat: Parvoviru 21.4 30 0.00065 35.5 -0.2 17 37-53 3-19 (529)
107 PRK02710 plastocyanin; Provisi 20.7 91 0.002 24.7 2.6 16 1-16 1-16 (119)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.8e-36 Score=328.49 Aligned_cols=290 Identities=32% Similarity=0.540 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHHhCCCCCcccCCCCC-CCCCCCCCceeeCCCCCCCCcEEEEEcCCCCCCCccccccCCCCCCCEEECCC
Q 039087 72 KTAYTALQAWKSAITDDPLRILDTWV-GDNVCSYKGIFCSDLGAQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNT 150 (414)
Q Consensus 72 ~~~~~~L~~~~~~~~~~~~~~l~~w~-~~~~c~~~gv~c~~~~~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 150 (414)
+.|+.+|++||+.+. +|...+.+|. ..++|.|.||.|+. ..+++.|||++|++.+.++..|..+++|+.|+|++
T Consensus 28 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~----~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~ 102 (968)
T PLN00113 28 AEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNN----SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN 102 (968)
T ss_pred HHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCC----CCcEEEEEecCCCccccCChHHhCCCCCCEEECCC
Confidence 478899999999984 6777789997 46899999999975 45799999999999888888888899999999999
Q ss_pred CcCCccCccccC-CCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccc-ccccccccccccccc
Q 039087 151 NRFSGTVPETFK-DLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKK-LDAIFVNNNQFSGEL 228 (414)
Q Consensus 151 n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~l~~n~l~~~~ 228 (414)
|++++.+|..+. .+++|++|+|++|.+++.+|. ..+++|++|+|++|.+++.+|..+.... |++|++++|.+.+.+
T Consensus 103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 180 (968)
T PLN00113 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180 (968)
T ss_pred CccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccC
Confidence 988877776543 677777777777777655553 2345555555555555555555544433 555555555555455
Q ss_pred CcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCC
Q 039087 229 PQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCM 307 (414)
Q Consensus 229 ~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 307 (414)
|..+.. .+|++|++++|.+.+.+|..+..+ ++|++|++++|++.+.+|..+..+++|++|++++|.+++.+|..+..+
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQM-KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCcCcCChHHcCc-CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 544433 335555555555554444444432 445555555555544444444444455555555544444444444444
Q ss_pred CCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCC
Q 039087 308 SDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIP 369 (414)
Q Consensus 308 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~ 369 (414)
++|++|++++|++++.+|..+..+++|++|+|++|.+.+.+|..+..+++|++|++++|.++
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 44444444444444444444444444444444444444444444444444444444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=3.3e-30 Score=280.90 Aligned_cols=253 Identities=26% Similarity=0.420 Sum_probs=167.1
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
.+++++|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..|.++++|++|+|++|++.+.+|..+..+++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 45677777777777777777777777777777777777767777777777777777777777777777777777777777
Q ss_pred cccccCCCCCCchhcccc-cccccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCc
Q 039087 196 LRFNSFSGPLPQDLFNKK-LDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLT 273 (414)
Q Consensus 196 Ls~N~i~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~ 273 (414)
|++|.+++.+|..+.... |++|++++|.+++.+|..+.. .+|++|++++|++.+.+|..+..+ ++|++|++++|.+.
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL-QKLISLDLSDNSLS 297 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhc-cCcCEEECcCCeec
Confidence 777777767776666544 777777777777666666554 346777777777666666666553 56666666666666
Q ss_pred ccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhh
Q 039087 274 GCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECAR 353 (414)
Q Consensus 274 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 353 (414)
+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++..+..+.
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence 66666666666666666666666666666666666666666666666656666666666666666666665554444443
Q ss_pred hcccCcEEEecCCCCC
Q 039087 354 LLIRNVGFDFSANCIP 369 (414)
Q Consensus 354 ~~~~L~~L~ls~N~l~ 369 (414)
...+|+.|++++|+++
T Consensus 378 ~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 378 SSGNLFKLILFSNSLE 393 (968)
T ss_pred CcCCCCEEECcCCEec
Confidence 3333444444444443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=6.5e-29 Score=237.87 Aligned_cols=276 Identities=19% Similarity=0.224 Sum_probs=225.2
Q ss_pred CCCCCCCCCCceeeCCC-----------CCCCCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCC
Q 039087 96 WVGDNVCSYKGIFCSDL-----------GAQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDL 164 (414)
Q Consensus 96 w~~~~~c~~~gv~c~~~-----------~~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 164 (414)
...+..|.-.-..|++. +..+..++.||+++|.+...-+..|.++++|+++++.+|.++ .+|......
T Consensus 46 cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~s 124 (873)
T KOG4194|consen 46 CPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHES 124 (873)
T ss_pred CCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccc
Confidence 33444555555666542 334677899999999999988888999999999999999999 788766666
Q ss_pred CCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhccc--ccccccccccccccccCcccCC-CCCCEEE
Q 039087 165 TSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNK--KLDAIFVNNNQFSGELPQNLGN-SPASVIN 241 (414)
Q Consensus 165 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~--~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ 241 (414)
.+|+.|+|.+|.|+.+-.+.+..++.|+.||||.|.|+ .+|..-|.. ++++|+|++|.|+..--..|.. .+|..|.
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 77999999999999888888999999999999999999 888776664 4999999999999655455544 4699999
Q ss_pred cccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCC
Q 039087 242 LANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLS 321 (414)
Q Consensus 242 ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 321 (414)
|++|+++ .+|...|+.+++|+.|+|..|+|.-.---.|..+++|+.|.|..|.|.......|..+.++++|+|+.|+++
T Consensus 204 LsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 204 LSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred cccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 9999999 899988886799999999999987333457788888888888888888666677778888888888888888
Q ss_pred CCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCCCC
Q 039087 322 GELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDMQ 374 (414)
Q Consensus 322 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~ 374 (414)
..-..++..+++|+.|+|++|.|..+.++.+...++|++|||++|+|+..+.+
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh
Confidence 55566777888888888888888888777777777788888888888877544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=3.7e-28 Score=232.68 Aligned_cols=256 Identities=20% Similarity=0.201 Sum_probs=185.9
Q ss_pred CCCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEE
Q 039087 115 QGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYL 194 (414)
Q Consensus 115 ~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 194 (414)
...+++.|+|.+|.|+.+-.++++.++.|+.|||+.|.|+...-.+|..-.++++|+|+.|+|+..-...|..+.+|.+|
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 35678889999988887777778888888888888888884444456666778888888888887767778888888888
Q ss_pred ecccccCCCCCCchhcc-cc-cccccccccccccccCccc-------------------------CCCCCCEEEcccCcC
Q 039087 195 DLRFNSFSGPLPQDLFN-KK-LDAIFVNNNQFSGELPQNL-------------------------GNSPASVINLANNRL 247 (414)
Q Consensus 195 ~Ls~N~i~~~~p~~~~~-~~-L~~L~l~~n~l~~~~~~~~-------------------------~~~~L~~L~ls~N~l 247 (414)
.|++|+|+ .+|...|+ .+ |+.|+|..|+|...---.| +..++++|+|+.|++
T Consensus 203 kLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 203 KLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred ecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 88888888 77766665 33 7788877777652211111 123466777777777
Q ss_pred CCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchh
Q 039087 248 SGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDL 327 (414)
Q Consensus 248 ~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 327 (414)
+..-..+++. +++|+.|++++|.|....++.+...++|++|+|++|+|+...+..|..+..|++|+|++|.|...-...
T Consensus 282 ~~vn~g~lfg-Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 282 QAVNEGWLFG-LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred hhhhcccccc-cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence 6333444444 377777788888777667777777777888888888887777777777778888888888777444556
Q ss_pred hhCCCCCCeEecccccCcccchh---hhhhcccCcEEEecCCCCCCCC
Q 039087 328 VCSLRTLMNLTVAFNFFSGFSQE---CARLLIRNVGFDFSANCIPGRD 372 (414)
Q Consensus 328 l~~l~~L~~L~L~~N~l~~~~~~---~~~~~~~L~~L~ls~N~l~~~~ 372 (414)
|..+++|++|||++|.|+..+.+ .|..+++|+.|+|.+|+|..++
T Consensus 361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence 77788888888888888876553 5666778888888888887764
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=1.2e-27 Score=230.80 Aligned_cols=251 Identities=24% Similarity=0.376 Sum_probs=208.8
Q ss_pred CCcEEEEEcCCCCCC-CccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEE
Q 039087 116 GPVVAGIDLNHANLQ-GNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYL 194 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 194 (414)
.+-|+.+|+++|.++ +..|..+..+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+..++.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 567899999999998 667888899999999999998888 78999999999999999999988 666778888999999
Q ss_pred ecccccCC-CCCCchhcccc-cccccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCc
Q 039087 195 DLRFNSFS-GPLPQDLFNKK-LDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQ 271 (414)
Q Consensus 195 ~Ls~N~i~-~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~ 271 (414)
++..|++. .-+|..+|... |..|+|++|++. +.|..+.. .++.+|+|++|+|. .||..++..+..|-.|+||+|+
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence 99999886 34788888877 999999999998 67777655 55788999999998 8888888777888889999999
Q ss_pred CcccCccccCCCCCCCEEEccCCCCC-------------------------CCCcccccCCCCCcEEEcccCCCCCCCch
Q 039087 272 LTGCIPEGVGLFSEMQVFDVSFNSLM-------------------------GHLPDTISCMSDIEILNLAHNQLSGELPD 326 (414)
Q Consensus 272 l~~~~~~~~~~l~~L~~L~Ls~N~l~-------------------------~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 326 (414)
+. .+|+.+..+..|+.|+|++|.+. ..+|.++..+.+|..+|+|.|.+. .+|+
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe 239 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE 239 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence 88 77888888888888888888752 246777788888999999999998 8899
Q ss_pred hhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCCC
Q 039087 327 LVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDM 373 (414)
Q Consensus 327 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~ 373 (414)
.+..+++|+.|+|++|+|+.... +.....+|++|++|+|+++..|.
T Consensus 240 cly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~LP~ 285 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVLPD 285 (1255)
T ss_pred HHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccchH
Confidence 99999999999999999887643 23444567888888888887653
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=1.4e-26 Score=223.53 Aligned_cols=271 Identities=23% Similarity=0.296 Sum_probs=177.9
Q ss_pred CCcEEEEEcCCCCCC-CccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEE
Q 039087 116 GPVVAGIDLNHANLQ-GNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYL 194 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 194 (414)
.+.++.+++.+|++. .-+|.++.++..|+.|||++|+++ +.|..+..-+++-+|+||+|+|..+.-..|.++.-|-+|
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFL 155 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhh
Confidence 456777777777775 235667777888888888888887 677777777777888888888873333456677778888
Q ss_pred ecccccCCCCCCchhcccc-cccccccccccccccCccc-CCCCCCEEEcccCcC-CCCCchhhhhcccCCcEEEccCCc
Q 039087 195 DLRFNSFSGPLPQDLFNKK-LDAIFVNNNQFSGELPQNL-GNSPASVINLANNRL-SGSIPASFGITNSKLKEILFLNNQ 271 (414)
Q Consensus 195 ~Ls~N~i~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~-~~~~L~~L~ls~N~l-~~~~p~~~~~~~~~L~~L~Ls~N~ 271 (414)
|||+|++. .+|+.+.... |+.|+|++|.+...--..+ ...+|++|.+++.+= ...+|.++-.+ .+|..+++|.|+
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDVDLSENN 233 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhh-hhhhhccccccC
Confidence 88888887 7777766654 8888888876652111111 123456666665442 12566666554 677777777777
Q ss_pred CcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCccc-chh
Q 039087 272 LTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGF-SQE 350 (414)
Q Consensus 272 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~ 350 (414)
+. .+|+.+-.+.+|+.|+||+|+|+ .+.-......+|++|+||+|+++ .+|++++.+++|+.|.+.+|+++-. +|+
T Consensus 234 Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 234 LP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred CC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCcc
Confidence 76 67777777777777777777776 55555556667777777777777 7777777777777777777776532 345
Q ss_pred hhhhcccCcEEEecCCCCCCCCCCCCCcccCCCCCCCccccCCC
Q 039087 351 CARLLIRNVGFDFSANCIPGRDMQRPQPDCSQIPGGGLSCLRIP 394 (414)
Q Consensus 351 ~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~~~l~~~~l~c~~l~ 394 (414)
.+..+..|+.+..++|.+.-+|.. ...|..+....++|.++-
T Consensus 311 GIGKL~~Levf~aanN~LElVPEg--lcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLELVPEG--LCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred chhhhhhhHHHHhhccccccCchh--hhhhHHHHHhccccccee
Confidence 555555566666666666555422 334555555555554443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=3.3e-26 Score=210.80 Aligned_cols=244 Identities=23% Similarity=0.326 Sum_probs=203.9
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
...++.+++.+|++. ..|++++.+..++.++.++|+++ .+|+.+..+.+|+.|+.++|++. .+|+.++.+..|+.|+
T Consensus 67 L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLD 143 (565)
T ss_pred ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhh
Confidence 355788888888887 56777888888888889988888 78888888888999999999888 7778888888899999
Q ss_pred cccccCCCCCCchhcccc-cccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcc
Q 039087 196 LRFNSFSGPLPQDLFNKK-LDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTG 274 (414)
Q Consensus 196 Ls~N~i~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~ 274 (414)
..+|+++ ..|..++... +..+++.+|++....|+.+....|++||+..|.+. .+|+.++.+ .+|+.|++..|++.
T Consensus 144 ~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l-~~L~~LyL~~Nki~- 219 (565)
T KOG0472|consen 144 ATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGL-ESLELLYLRRNKIR- 219 (565)
T ss_pred ccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcch-hhhHHHHhhhcccc-
Confidence 9999988 7787777655 88889999998855555555566899999998888 899998875 78999999999998
Q ss_pred cCccccCCCCCCCEEEccCCCCCCCCcccc-cCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhh
Q 039087 275 CIPEGVGLFSEMQVFDVSFNSLMGHLPDTI-SCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECAR 353 (414)
Q Consensus 275 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 353 (414)
.+| .|..+..|++|+++.|.|. .+|... .+++++..|||..|+++ +.|+.++-+.+|++||+++|.|++.+++. .
T Consensus 220 ~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sL-g 295 (565)
T KOG0472|consen 220 FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSL-G 295 (565)
T ss_pred cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCccc-c
Confidence 667 7888999999999999998 566554 48899999999999999 88999999999999999999999887654 4
Q ss_pred hcccCcEEEecCCCCCCC
Q 039087 354 LLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 354 ~~~~L~~L~ls~N~l~~~ 371 (414)
.+ +|+.|-+.+|++..+
T Consensus 296 nl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 296 NL-HLKFLALEGNPLRTI 312 (565)
T ss_pred cc-eeeehhhcCCchHHH
Confidence 44 688999999998765
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=3.9e-25 Score=203.73 Aligned_cols=258 Identities=25% Similarity=0.344 Sum_probs=223.0
Q ss_pred cEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecc
Q 039087 118 VVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLR 197 (414)
Q Consensus 118 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 197 (414)
.+..+++++|.+.. +-+++.++..|..|++.+|+++ ..|.+++.+..++.|+.++|.+. ++|+.+..+.+|+.|+.+
T Consensus 46 ~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 47789999999985 4456899999999999999999 78889999999999999999999 899999999999999999
Q ss_pred cccCCCCCCchhcccc-cccccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCccc
Q 039087 198 FNSFSGPLPQDLFNKK-LDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGC 275 (414)
Q Consensus 198 ~N~i~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~ 275 (414)
+|.+. .+|++++... ++.++..+|+++ ..|..++. .++..+++.+|++. ..|+.... ++.|++|+...|-++ .
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-T 197 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-c
Confidence 99999 8888888765 999999999999 56665555 67999999999999 67766666 589999999999998 8
Q ss_pred CccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhh-CCCCCCeEecccccCcccchhhhhh
Q 039087 276 IPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVC-SLRTLMNLTVAFNFFSGFSQECARL 354 (414)
Q Consensus 276 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~ 354 (414)
+|+.++.+.+|+.|+|..|+|. .+| .|..++.|++|++..|.|+ .+|.... ++++|..|||.+|+++..+.+. -.
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~-cl 273 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEI-CL 273 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHH-HH
Confidence 9999999999999999999998 777 7999999999999999999 7777765 8999999999999999876654 44
Q ss_pred cccCcEEEecCCCCCCCCCCCC--CcccCCCCCCC
Q 039087 355 LIRNVGFDFSANCIPGRDMQRP--QPDCSQIPGGG 387 (414)
Q Consensus 355 ~~~L~~L~ls~N~l~~~~~~~~--~~~~~~l~~~~ 387 (414)
+.+|..||+|+|.|++.|...- .-....+.|++
T Consensus 274 LrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 274 LRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNP 308 (565)
T ss_pred hhhhhhhcccCCccccCCcccccceeeehhhcCCc
Confidence 5578999999999999987642 22333444444
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.86 E-value=2.5e-21 Score=200.62 Aligned_cols=228 Identities=26% Similarity=0.388 Sum_probs=133.0
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEec
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDL 196 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 196 (414)
..++.|+|++|+++. +|..+. ++|++|++++|+|+ .+|..+. .+|+.|+|++|++. .+|..+. .+|++|++
T Consensus 199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 456666666666663 333332 35666666666666 4454432 35666666666666 5555443 35666666
Q ss_pred ccccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccC
Q 039087 197 RFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCI 276 (414)
Q Consensus 197 s~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~ 276 (414)
++|+++ .+|..+. ..|+.|++++|+++ .+|..+. ..|+.|++++|.++ .+|..+. ++|+.|++++|.++ .+
T Consensus 270 s~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt-~LP~~lp-~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~Lt-~L 340 (754)
T PRK15370 270 FHNKIS-CLPENLP-EELRYLSVYDNSIR-TLPAHLP-SGITHLNVQSNSLT-ALPETLP---PGLKTLEAGENALT-SL 340 (754)
T ss_pred cCCccC-ccccccC-CCCcEEECCCCccc-cCcccch-hhHHHHHhcCCccc-cCCcccc---ccceeccccCCccc-cC
Confidence 666666 5555443 24666666666666 3443332 24666666666666 4554442 46677777777666 35
Q ss_pred ccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccch---hhhh
Q 039087 277 PEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQ---ECAR 353 (414)
Q Consensus 277 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~---~~~~ 353 (414)
|..+. ++|+.|++++|+|+ .+|..+. ++|++|+|++|+|+ .+|..+. ..|+.|++++|+|+.++. .+..
T Consensus 341 P~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~ 412 (754)
T PRK15370 341 PASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFRG 412 (754)
T ss_pred Chhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHhh
Confidence 54442 56777777777766 4555442 46777777777776 5555543 256677777777765432 2333
Q ss_pred hcccCcEEEecCCCCCC
Q 039087 354 LLIRNVGFDFSANCIPG 370 (414)
Q Consensus 354 ~~~~L~~L~ls~N~l~~ 370 (414)
..+.+..|++.+|+|+.
T Consensus 413 ~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 413 EGPQPTRIIVEYNPFSE 429 (754)
T ss_pred cCCCccEEEeeCCCccH
Confidence 34556677777777754
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.86 E-value=1.1e-21 Score=203.24 Aligned_cols=229 Identities=21% Similarity=0.356 Sum_probs=188.4
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEec
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDL 196 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 196 (414)
.+.+.|++++++++. +|..+. ++|+.|+|++|+|+ .+|..+. .+|++|++++|+++ .+|..+. .+|+.|+|
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 457899999999984 555443 57999999999999 6776654 58999999999999 6776654 57999999
Q ss_pred ccccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccC
Q 039087 197 RFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCI 276 (414)
Q Consensus 197 s~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~ 276 (414)
++|.+. .+|..+. ..|+.|++++|+++ .+|..+. ..|+.|++++|+++ .+|..+. ++|++|++++|+++ .+
T Consensus 249 s~N~L~-~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt-~L 319 (754)
T PRK15370 249 SINRIT-ELPERLP-SALQSLDLFHNKIS-CLPENLP-EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLT-AL 319 (754)
T ss_pred cCCccC-cCChhHh-CCCCEEECcCCccC-ccccccC-CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCccc-cC
Confidence 999998 8887764 46999999999999 6777664 47999999999999 6777653 57999999999998 46
Q ss_pred ccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcc
Q 039087 277 PEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLI 356 (414)
Q Consensus 277 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 356 (414)
|..+ .++|++|++++|.++ .+|..+. ++|+.|++++|+|+ .+|..+ .++|++|+|++|.|+.+++....
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~~--- 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLPA--- 388 (754)
T ss_pred Cccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHHH---
Confidence 6544 368999999999998 4676653 78999999999999 678766 36899999999999987665432
Q ss_pred cCcEEEecCCCCCCCCCC
Q 039087 357 RNVGFDFSANCIPGRDMQ 374 (414)
Q Consensus 357 ~L~~L~ls~N~l~~~~~~ 374 (414)
.|+.|++++|+|+.+|..
T Consensus 389 sL~~LdLs~N~L~~LP~s 406 (754)
T PRK15370 389 ALQIMQASRNNLVRLPES 406 (754)
T ss_pred HHHHHhhccCCcccCchh
Confidence 578999999999988754
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=5.8e-21 Score=196.98 Aligned_cols=225 Identities=26% Similarity=0.363 Sum_probs=147.5
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhcc----------
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTL---------- 186 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---------- 186 (414)
.+++.|++.+|+++. +|. ..++|++|+|++|+|+ .+|.. .++|++|++++|.++ .+|..+.
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp~~L~~L~Ls~N 292 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALPSGLCKLWIFGN 292 (788)
T ss_pred cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhchhhcCEEECcCC
Confidence 457778888888774 332 2567788888888777 44532 234555555555544 2332110
Q ss_pred -------CCCCCCEEecccccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcc
Q 039087 187 -------YIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITN 259 (414)
Q Consensus 187 -------~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~ 259 (414)
.+++|++|++++|+++ .+|.. ...|+.|++++|.++ .+|.. ..+|++|++++|+|+ .+|.. .
T Consensus 293 ~Lt~LP~~p~~L~~LdLS~N~L~-~Lp~l--p~~L~~L~Ls~N~L~-~LP~l--p~~Lq~LdLS~N~Ls-~LP~l----p 361 (788)
T PRK15387 293 QLTSLPVLPPGLQELSVSDNQLA-SLPAL--PSELCKLWAYNNQLT-SLPTL--PSGLQELSVSDNQLA-SLPTL----P 361 (788)
T ss_pred ccccccccccccceeECCCCccc-cCCCC--cccccccccccCccc-ccccc--ccccceEecCCCccC-CCCCC----C
Confidence 1245666666666665 34431 123556666666665 34431 135778888888877 56643 2
Q ss_pred cCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEec
Q 039087 260 SKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTV 339 (414)
Q Consensus 260 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 339 (414)
.+|+.|++++|+++ .+|.. ..+|+.|++++|+|+ .+|.. .++|+.|++++|+|+ .+|..+ .+|+.|++
T Consensus 362 ~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~L 429 (788)
T PRK15387 362 SELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSV 429 (788)
T ss_pred cccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhh
Confidence 56777888888877 45543 357889999999988 45543 357889999999998 577543 46788999
Q ss_pred ccccCcccchhhhhhcccCcEEEecCCCCCCCCCC
Q 039087 340 AFNFFSGFSQECARLLIRNVGFDFSANCIPGRDMQ 374 (414)
Q Consensus 340 ~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~ 374 (414)
++|+|+.+ |..+..+++|+.|+|++|+|++..++
T Consensus 430 s~NqLt~L-P~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 430 YRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ccCccccc-ChHHhhccCCCeEECCCCCCCchHHH
Confidence 99999865 55567778899999999999987544
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=9e-23 Score=205.26 Aligned_cols=244 Identities=25% Similarity=0.307 Sum_probs=149.1
Q ss_pred CCCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEE
Q 039087 115 QGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYL 194 (414)
Q Consensus 115 ~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 194 (414)
.+.+++++|+++|++.. +|..+..+.+|+.++..+|+++ .+|..+..+++|++|++.+|.+. .+|.....+++|++|
T Consensus 239 ~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence 35678888888888874 4477888888888888888886 67777777888888888888888 777777788889999
Q ss_pred ecccccCCCCCCchhcccc---cccccccccccccccCcccCC--CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccC
Q 039087 195 DLRFNSFSGPLPQDLFNKK---LDAIFVNNNQFSGELPQNLGN--SPASVINLANNRLSGSIPASFGITNSKLKEILFLN 269 (414)
Q Consensus 195 ~Ls~N~i~~~~p~~~~~~~---L~~L~l~~n~l~~~~~~~~~~--~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~ 269 (414)
+|..|+|. .+|+.++... ++.|+.+.|.+. ..|..-.. ..|+.|.+.+|.+++..-..+... ++|+.|+|++
T Consensus 316 dL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~-~hLKVLhLsy 392 (1081)
T KOG0618|consen 316 DLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNF-KHLKVLHLSY 392 (1081)
T ss_pred eehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccc-cceeeeeecc
Confidence 99988887 7776554421 444555555444 22211111 225555555555554444333332 5566666666
Q ss_pred CcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccch
Q 039087 270 NQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQ 349 (414)
Q Consensus 270 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 349 (414)
|++.......+.++..|++|+||+|+++ .+|..+..+..|++|...+|+|. ..| .+..++.|+.+|++.|.++....
T Consensus 393 NrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l 469 (1081)
T KOG0618|consen 393 NRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTL 469 (1081)
T ss_pred cccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhh
Confidence 6555222234455555556666666655 45555555555555555555555 455 45555556666666665555432
Q ss_pred hhhhhcccCcEEEecCCC
Q 039087 350 ECARLLIRNVGFDFSANC 367 (414)
Q Consensus 350 ~~~~~~~~L~~L~ls~N~ 367 (414)
......++|++|||++|.
T Consensus 470 ~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 470 PEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhCCCcccceeeccCCc
Confidence 222222455666666554
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=6.3e-20 Score=189.33 Aligned_cols=219 Identities=26% Similarity=0.346 Sum_probs=131.1
Q ss_pred EEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEeccc
Q 039087 119 VAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRF 198 (414)
Q Consensus 119 l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 198 (414)
-..|||+.++++ .+|..+. ++|+.|++.+|+|+ .+|.. .++|++|+|++|+|+ .+|.. .++|++|++++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 557899999998 5676665 48999999999999 56653 578999999999999 56643 46788888888
Q ss_pred ccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCcc
Q 039087 199 NSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPE 278 (414)
Q Consensus 199 N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~ 278 (414)
|.++ .+|... ..|+.|++++|+++ .+|.. ..+|++|++++|+++ .+|.. ..+|+.|++++|+++ .+|.
T Consensus 272 N~L~-~Lp~lp--~~L~~L~Ls~N~Lt-~LP~~--p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~-~LP~ 339 (788)
T PRK15387 272 NPLT-HLPALP--SGLCKLWIFGNQLT-SLPVL--PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLT-SLPT 339 (788)
T ss_pred Cchh-hhhhch--hhcCEEECcCCccc-ccccc--ccccceeECCCCccc-cCCCC----cccccccccccCccc-cccc
Confidence 8887 555422 34667777777776 44442 245677777777766 44431 134555555555554 2332
Q ss_pred ccCCCCCCCEEEccCCCCCCCCccccc-----------------CCCCCcEEEcccCCCCCCCchhhhCCCCCCeEeccc
Q 039087 279 GVGLFSEMQVFDVSFNSLMGHLPDTIS-----------------CMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAF 341 (414)
Q Consensus 279 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----------------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 341 (414)
. ..+|++|+|++|+|+ .+|.... ...+|+.|+|++|+|+ .+|.. .++|+.|++++
T Consensus 340 l---p~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~ 411 (788)
T PRK15387 340 L---PSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSG 411 (788)
T ss_pred c---ccccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccC
Confidence 1 134555555555554 2332110 1134555555555555 34432 23455566666
Q ss_pred ccCcccchhhhhhcccCcEEEecCCCCCCCC
Q 039087 342 NFFSGFSQECARLLIRNVGFDFSANCIPGRD 372 (414)
Q Consensus 342 N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~ 372 (414)
|+|+.++ .. ..+|+.|++++|+|+.+|
T Consensus 412 N~LssIP-~l---~~~L~~L~Ls~NqLt~LP 438 (788)
T PRK15387 412 NRLTSLP-ML---PSGLLSLSVYRNQLTRLP 438 (788)
T ss_pred CcCCCCC-cc---hhhhhhhhhccCcccccC
Confidence 6655432 11 123455666666666544
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=5.5e-22 Score=182.77 Aligned_cols=264 Identities=17% Similarity=0.163 Sum_probs=196.0
Q ss_pred CceeeCCCC------CCCCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcC-ccC
Q 039087 105 KGIFCSDLG------AQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSN-NQF 177 (414)
Q Consensus 105 ~gv~c~~~~------~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l 177 (414)
.-|.|+..+ ..+...++|+|..|.|+.+.+.+|+.+++|+.|||++|.|+.+-|++|..+.+|.+|-+.+ |+|
T Consensus 49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 346676542 2367889999999999999999999999999999999999999999999999988877766 999
Q ss_pred CCCCchhccCCCCCCEEecccccCCCCCCchhcccc-cccccccccccccccCc-ccCC-CCCCEEEcccCcCCC-----
Q 039087 178 SGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKK-LDAIFVNNNQFSGELPQ-NLGN-SPASVINLANNRLSG----- 249 (414)
Q Consensus 178 ~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~-~~~~-~~L~~L~ls~N~l~~----- 249 (414)
+......|.++.+|+.|.+.-|++.....+.+.... +..|.+.+|.+. .++. .+.. ..++.+.+..|.+..
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccc
Confidence 966667899999999999999999844444444444 888888888887 4544 3322 346666666665210
Q ss_pred ------------------CCchhhhh----------cccCCcEE---EccCCcCcccCc-cccCCCCCCCEEEccCCCCC
Q 039087 250 ------------------SIPASFGI----------TNSKLKEI---LFLNNQLTGCIP-EGVGLFSEMQVFDVSFNSLM 297 (414)
Q Consensus 250 ------------------~~p~~~~~----------~~~~L~~L---~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~ 297 (414)
.+|..+.. ....++.+ ..+.+......| ..|..+++|++|+|++|+|+
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 01111000 00012211 111222222333 46888899999999999999
Q ss_pred CCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCC
Q 039087 298 GHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIP 369 (414)
Q Consensus 298 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~ 369 (414)
++-+.+|.++.++++|.|..|+|...-...|..+..|+.|+|++|+|+.+.|..|+....|.+|++-.|++-
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 888888999999999999999998555667888899999999999999888888888888999999888875
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=1.1e-18 Score=192.10 Aligned_cols=249 Identities=15% Similarity=0.203 Sum_probs=166.5
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
+.+++.|+|.++.+. .++..+..+++|++|+|+++.....+|. +..+++|++|+|++|.....+|..+..+++|++|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 467778888888776 4566677788888888887654445663 67788888888888765557788888888888888
Q ss_pred cccccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhh--------------------
Q 039087 196 LRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASF-------------------- 255 (414)
Q Consensus 196 Ls~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~-------------------- 255 (414)
+++|.....+|..+...+|+.|++++|.....+|... .+|++|++++|.+. .+|..+
T Consensus 688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~--~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIS--TNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred CCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccccc--CCcCeeecCCCccc-cccccccccccccccccccchhhccc
Confidence 8886544577766644457777777776554555432 35677777777765 455432
Q ss_pred ---------hhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCch
Q 039087 256 ---------GITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPD 326 (414)
Q Consensus 256 ---------~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 326 (414)
....++|++|++++|.....+|..++.+++|+.|++++|...+.+|..+ .+++|++|++++|.....+|.
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence 1112467777777776665677777777777777777765434566554 567777777777644434443
Q ss_pred hhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecC-CCCCCCCCC
Q 039087 327 LVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSA-NCIPGRDMQ 374 (414)
Q Consensus 327 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~-N~l~~~~~~ 374 (414)
. ..+|++|+|++|.|+.+ |..+..+++|++|++++ |+++.++..
T Consensus 844 ~---~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l~~~ 888 (1153)
T PLN03210 844 I---STNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVSLN 888 (1153)
T ss_pred c---ccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCccCcc
Confidence 2 35677777777777754 44566677777888876 666666543
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=8.5e-22 Score=198.31 Aligned_cols=226 Identities=25% Similarity=0.297 Sum_probs=155.5
Q ss_pred CCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccc-ccccc
Q 039087 140 LTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKK-LDAIF 218 (414)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~ 218 (414)
.++|+.|+.++|.++.. ...+. -.+|+++++++|+++ .+|+.+..+.+|+.+++.+|.++ .+|..++... |+.|.
T Consensus 218 g~~l~~L~a~~n~l~~~-~~~p~-p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~ 293 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTL-DVHPV-PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLS 293 (1081)
T ss_pred CcchheeeeccCcceee-ccccc-cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHH
Confidence 34455555555555521 11111 235566666666655 44455555666666666666664 5555554433 55555
Q ss_pred ccccccccccCcccC-CCCCCEEEcccCcCCCCCchhhh-------------------------hcccCCcEEEccCCcC
Q 039087 219 VNNNQFSGELPQNLG-NSPASVINLANNRLSGSIPASFG-------------------------ITNSKLKEILFLNNQL 272 (414)
Q Consensus 219 l~~n~l~~~~~~~~~-~~~L~~L~ls~N~l~~~~p~~~~-------------------------~~~~~L~~L~Ls~N~l 272 (414)
+.+|.+. .+|.... ...|++|+|..|++. .+|..++ ...+.|++|++.+|.+
T Consensus 294 ~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 294 AAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred hhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence 5555555 3444443 344555555555555 4443322 2235688889999999
Q ss_pred cccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhh
Q 039087 273 TGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECA 352 (414)
Q Consensus 273 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 352 (414)
+...-+.+..+++|+.|+|++|++.......+.++..|++|+||+|+++ .+|+.+..+..|++|...+|++...+ -+
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP--e~ 448 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP--EL 448 (1081)
T ss_pred cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech--hh
Confidence 9877778889999999999999998555566788999999999999999 89999999999999999999999776 45
Q ss_pred hhcccCcEEEecCCCCCCCCCC
Q 039087 353 RLLIRNVGFDFSANCIPGRDMQ 374 (414)
Q Consensus 353 ~~~~~L~~L~ls~N~l~~~~~~ 374 (414)
..++.|+.+|++.|+|+....+
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~ 470 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLP 470 (1081)
T ss_pred hhcCcceEEecccchhhhhhhh
Confidence 6677899999999999987544
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=2.7e-18 Score=188.93 Aligned_cols=245 Identities=16% Similarity=0.136 Sum_probs=187.5
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEec
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDL 196 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 196 (414)
..++.|++.++.+. .+|..| ...+|+.|++.+|++. .++..+..+++|++|+|+++.....+|. +..+++|++|+|
T Consensus 589 ~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L 664 (1153)
T PLN03210 589 PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL 664 (1153)
T ss_pred cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence 45788888887776 455555 5688999999999988 6777788899999999998765446774 778899999999
Q ss_pred ccccCCCCCCchhcccc-cccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCccc
Q 039087 197 RFNSFSGPLPQDLFNKK-LDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGC 275 (414)
Q Consensus 197 s~N~i~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~ 275 (414)
++|.....+|..+...+ |+.|++++|.....+|..+...+|++|++++|.....+|.. ..+|++|++++|.+. .
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~ 739 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-E 739 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-c
Confidence 99876668888887755 99999999766557887776678999999998765566643 368999999999876 4
Q ss_pred Ccccc------------------------------CCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCc
Q 039087 276 IPEGV------------------------------GLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELP 325 (414)
Q Consensus 276 ~~~~~------------------------------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 325 (414)
+|..+ ...++|+.|+|++|.....+|..+.++++|++|+|++|..-+.+|
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 45332 112467888888887766788888889999999998875444777
Q ss_pred hhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCCCC
Q 039087 326 DLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDMQ 374 (414)
Q Consensus 326 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~ 374 (414)
..+ .+++|++|+|++|..-...+.. ..+|+.|+|++|.|+.+|..
T Consensus 820 ~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~s 864 (1153)
T PLN03210 820 TGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWW 864 (1153)
T ss_pred CCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHH
Confidence 665 6888999999987644333332 35789999999999987743
No 18
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.79 E-value=5e-21 Score=183.75 Aligned_cols=178 Identities=28% Similarity=0.437 Sum_probs=109.4
Q ss_pred CCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccccccccc
Q 039087 140 LTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFV 219 (414)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l 219 (414)
+..-...||+.|++. ++|..+..+..|+.+.|++|.+. .+|..+.++..|.+|||+.|+++ .+|..++.+.|+.|.+
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIV 150 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEE
Confidence 555667788888888 77888888888888888888888 78888888888888888888888 5555555555555555
Q ss_pred cccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCC
Q 039087 220 NNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGH 299 (414)
Q Consensus 220 ~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 299 (414)
++|+++ .+|..++ ....|..|+.+.|++. .+|..++.+.+|+.|.+..|++. .
T Consensus 151 sNNkl~------------------------~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~ 203 (722)
T KOG0532|consen 151 SNNKLT------------------------SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-D 203 (722)
T ss_pred ecCccc------------------------cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-h
Confidence 544444 4444444 2344555555555554 44445555555555555555554 3
Q ss_pred CcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccch
Q 039087 300 LPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQ 349 (414)
Q Consensus 300 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 349 (414)
+|..+..++ |..||+|+|+|+ .+|..|.+|+.|++|-|.+|.++..+.
T Consensus 204 lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 204 LPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred CCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChH
Confidence 444444332 455555555555 555555555555555555555554433
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=4.7e-20 Score=176.02 Aligned_cols=250 Identities=20% Similarity=0.214 Sum_probs=143.7
Q ss_pred cEEEEEcCCCCCCCc----cccccCCCCCCCEEECCCCcCCc------cCccccCCCCCCCEEeCcCccCCCCCchhccC
Q 039087 118 VVAGIDLNHANLQGN----LVKELSLLTDVNLLHLNTNRFSG------TVPETFKDLTSLQELDLSNNQFSGPFPLVTLY 187 (414)
Q Consensus 118 ~l~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 187 (414)
.++.|+++++.++.. ++..+...+.+++++++++.+.. .++..+..+++|++|++++|.+.+..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 477778887777432 34445667778888887777652 23345566778888888888777555555554
Q ss_pred CCC---CCEEecccccCCCC----CCchhcc--cccccccccccccccccC----cccC-CCCCCEEEcccCcCCCCCc-
Q 039087 188 IPN---LVYLDLRFNSFSGP----LPQDLFN--KKLDAIFVNNNQFSGELP----QNLG-NSPASVINLANNRLSGSIP- 252 (414)
Q Consensus 188 l~~---L~~L~Ls~N~i~~~----~p~~~~~--~~L~~L~l~~n~l~~~~~----~~~~-~~~L~~L~ls~N~l~~~~p- 252 (414)
+.+ |++|++++|+++.. +...+.. .+|++|++++|.+++... ..+. ..+|++|++++|.+++...
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 444 88888888777621 1112222 247777777777663221 1221 1357777777777664222
Q ss_pred ---hhhhhcccCCcEEEccCCcCccc----CccccCCCCCCCEEEccCCCCCCCCccccc-----CCCCCcEEEcccCCC
Q 039087 253 ---ASFGITNSKLKEILFLNNQLTGC----IPEGVGLFSEMQVFDVSFNSLMGHLPDTIS-----CMSDIEILNLAHNQL 320 (414)
Q Consensus 253 ---~~~~~~~~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l 320 (414)
..+... ++|++|++++|.+.+. +...+..+++|++|++++|.+++.....+. ..+.|++|++++|.+
T Consensus 184 ~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 184 ALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 222222 4677777777766532 233445566677777777776642222211 135677777777776
Q ss_pred CC----CCchhhhCCCCCCeEecccccCcccch----hhhhhc-ccCcEEEecCCCC
Q 039087 321 SG----ELPDLVCSLRTLMNLTVAFNFFSGFSQ----ECARLL-IRNVGFDFSANCI 368 (414)
Q Consensus 321 ~~----~~p~~l~~l~~L~~L~L~~N~l~~~~~----~~~~~~-~~L~~L~ls~N~l 368 (414)
++ .+...+..+++|+++++++|.++.... ..+... +.|+++++.+|++
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 52 233344555667777777777765422 223333 4566777766654
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.76 E-value=2.8e-20 Score=171.61 Aligned_cols=249 Identities=20% Similarity=0.194 Sum_probs=189.3
Q ss_pred EEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEeccc-c
Q 039087 121 GIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRF-N 199 (414)
Q Consensus 121 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N 199 (414)
.+|-++.+++ .+|..+. +.-.+++|..|+|+...+.+|..+++|+.||||+|+|+.+-|++|..+++|..|-+.+ |
T Consensus 50 ~VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred eEEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 4566666776 3444332 3568899999999977788999999999999999999989999999999988877766 9
Q ss_pred cCCCCCCchhcc-cc-cccccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCc---
Q 039087 200 SFSGPLPQDLFN-KK-LDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLT--- 273 (414)
Q Consensus 200 ~i~~~~p~~~~~-~~-L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~--- 273 (414)
+|+ .+|...|. .. ++.|.+.-|++.-...+.+.. .++..|.+-.|.+. .++...+..+..++.+.+..|.+.
T Consensus 127 kI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 127 KIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred chh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccccc
Confidence 999 88887776 33 999999999988555555544 45788899999988 777755555577888888777621
Q ss_pred ---------ccCccccCCCCCCCEEEccC-------------------------CCCCCCCc-ccccCCCCCcEEEcccC
Q 039087 274 ---------GCIPEGVGLFSEMQVFDVSF-------------------------NSLMGHLP-DTISCMSDIEILNLAHN 318 (414)
Q Consensus 274 ---------~~~~~~~~~l~~L~~L~Ls~-------------------------N~l~~~~p-~~l~~l~~L~~L~Ls~N 318 (414)
...|..++......-..+.+ +....+.| ..|..+++|++|+|++|
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence 11222222222111111111 11222222 45889999999999999
Q ss_pred CCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCCCC
Q 039087 319 QLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDMQ 374 (414)
Q Consensus 319 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~ 374 (414)
+|++.-+.+|..+..+++|.|..|+|..+....|+.+..|+.|+|.+|+|+.+.+-
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence 99988889999999999999999999999889999999999999999999987543
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=1.4e-19 Score=172.64 Aligned_cols=252 Identities=23% Similarity=0.261 Sum_probs=184.9
Q ss_pred EEEcCCCCCCC-ccccccCCCCCCCEEECCCCcCCcc----CccccCCCCCCCEEeCcCccCCC------CCchhccCCC
Q 039087 121 GIDLNHANLQG-NLVKELSLLTDVNLLHLNTNRFSGT----VPETFKDLTSLQELDLSNNQFSG------PFPLVTLYIP 189 (414)
Q Consensus 121 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~------~~p~~~~~l~ 189 (414)
.|+|..+.+++ .....+..+..|++|+++++.++.. ++..+...+.|++|+++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 46778888873 3344567788899999999998642 55566778889999999998872 2345677789
Q ss_pred CCCEEecccccCCCCCCchhcc----cccccccccccccccc----cCcccCC--CCCCEEEcccCcCCCCCchhhh---
Q 039087 190 NLVYLDLRFNSFSGPLPQDLFN----KKLDAIFVNNNQFSGE----LPQNLGN--SPASVINLANNRLSGSIPASFG--- 256 (414)
Q Consensus 190 ~L~~L~Ls~N~i~~~~p~~~~~----~~L~~L~l~~n~l~~~----~~~~~~~--~~L~~L~ls~N~l~~~~p~~~~--- 256 (414)
+|++|++++|.+....+..+.. .+|++|++++|.++.. +...+.. .+|++|++++|.+++.....+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 9999999999997555544432 2399999999998732 2222222 4799999999999853332222
Q ss_pred hcccCCcEEEccCCcCccc----CccccCCCCCCCEEEccCCCCCCC----CcccccCCCCCcEEEcccCCCCCCCchhh
Q 039087 257 ITNSKLKEILFLNNQLTGC----IPEGVGLFSEMQVFDVSFNSLMGH----LPDTISCMSDIEILNLAHNQLSGELPDLV 328 (414)
Q Consensus 257 ~~~~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 328 (414)
..+.+|++|++++|.+++. ++..+..+++|++|++++|.+++. +...+..+++|++|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 2236899999999999843 334456668999999999998743 34456678899999999999986333332
Q ss_pred h-----CCCCCCeEecccccCccc----chhhhhhcccCcEEEecCCCCCCCC
Q 039087 329 C-----SLRTLMNLTVAFNFFSGF----SQECARLLIRNVGFDFSANCIPGRD 372 (414)
Q Consensus 329 ~-----~l~~L~~L~L~~N~l~~~----~~~~~~~~~~L~~L~ls~N~l~~~~ 372 (414)
. ..+.|++|++++|.++.. ....+...++|+++++++|.++..+
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 2 247999999999999843 2234555578999999999999764
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=1.9e-20 Score=154.48 Aligned_cols=185 Identities=25% Similarity=0.436 Sum_probs=134.5
Q ss_pred cCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhccccccc
Q 039087 137 LSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDA 216 (414)
Q Consensus 137 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~ 216 (414)
+..+.+++.|.|++|+++ .+|..++.+.+|+.|++++|+|+ .+|..++.+++|++|+++-|++. .+|..+....
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p--- 102 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP--- 102 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc---
Confidence 445666777778888887 66667777888888888888887 77777778888888888877776 5555444332
Q ss_pred ccccccccccccCcccCCCCCCEEEcccCcCCC-CCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCC
Q 039087 217 IFVNNNQFSGELPQNLGNSPASVINLANNRLSG-SIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNS 295 (414)
Q Consensus 217 L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~-~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 295 (414)
.|++||+.+|++.. .+|..++.+ ..|+.|+|++|.+. .+|..++++++|+.|.+.+|.
T Consensus 103 -------------------~levldltynnl~e~~lpgnff~m-~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 103 -------------------ALEVLDLTYNNLNENSLPGNFFYM-TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred -------------------hhhhhhccccccccccCCcchhHH-HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence 24444444444432 466666654 77888889999887 788888999999999999998
Q ss_pred CCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCC---CCCeEecccccCcccchh
Q 039087 296 LMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLR---TLMNLTVAFNFFSGFSQE 350 (414)
Q Consensus 296 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~L~~N~l~~~~~~ 350 (414)
+- .+|..++.+..|++|++.+|+++ .+|..+..+. +=+.+.+.+|.+...+.+
T Consensus 162 ll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 162 LL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred hh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 87 78888888889999999999998 7777776543 234566777776655544
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=3e-19 Score=147.40 Aligned_cols=160 Identities=26% Similarity=0.505 Sum_probs=125.7
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
..+++.|.|++|+++ .+|+.++.+.+|+.|++.+|+|+ .+|.+++.+++|+.|++..|++. ..|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 467899999999998 56778999999999999999999 88999999999999999999999 8999999999999999
Q ss_pred cccccCC-CCCCchhcccc-cccccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcC
Q 039087 196 LRFNSFS-GPLPQDLFNKK-LDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQL 272 (414)
Q Consensus 196 Ls~N~i~-~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l 272 (414)
|.+|++. ..+|..+|... |+.|++++|.+. .+|..++. .+|+.|.+..|.+- .+|..++.+ ..|++|.+.+|++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~l-t~lrelhiqgnrl 185 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDL-TRLRELHIQGNRL 185 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHH-HHHHHHhccccee
Confidence 9999997 45787777755 888888888887 55555544 34666666666655 556655554 5566666666655
Q ss_pred cccCccccCC
Q 039087 273 TGCIPEGVGL 282 (414)
Q Consensus 273 ~~~~~~~~~~ 282 (414)
+ .+|..++.
T Consensus 186 ~-vlppel~~ 194 (264)
T KOG0617|consen 186 T-VLPPELAN 194 (264)
T ss_pred e-ecChhhhh
Confidence 5 44444433
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.70 E-value=3.9e-19 Score=170.89 Aligned_cols=192 Identities=26% Similarity=0.338 Sum_probs=161.3
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEec
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDL 196 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 196 (414)
......||+.|.+. ++|..+..+..|+.+.|+.|.|. .+|..+.++..|++|||+.|+++ .+|..++.|+ |+.|.+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 34567899999998 67888999999999999999998 89999999999999999999999 8898898886 999999
Q ss_pred ccccCCCCCCchhcccc-cccccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcc
Q 039087 197 RFNSFSGPLPQDLFNKK-LDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTG 274 (414)
Q Consensus 197 s~N~i~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~ 274 (414)
++|+++ .+|..+.... |..|+.+.|.+. .+|..++. .+|+.|++..|++. .+|+.+..+ .|..||+++|++.
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L--pLi~lDfScNkis- 224 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL--PLIRLDFSCNKIS- 224 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC--ceeeeecccCcee-
Confidence 999998 8998887543 999999999998 55555544 67899999999998 888888854 5999999999998
Q ss_pred cCccccCCCCCCCEEEccCCCCCCCCcccc---cCCCCCcEEEcccCC
Q 039087 275 CIPEGVGLFSEMQVFDVSFNSLMGHLPDTI---SCMSDIEILNLAHNQ 319 (414)
Q Consensus 275 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~ 319 (414)
.+|-.|..|+.|++|-|.+|.++ ..|..+ +...-.++|+..-++
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 78999999999999999999998 566554 223334667776663
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.64 E-value=1.7e-15 Score=156.44 Aligned_cols=154 Identities=29% Similarity=0.439 Sum_probs=127.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcccCCCCCCCCCC----CCCceeeCCCC-CCCCcEEEEEcCCCCCCCccccccCCCCC
Q 039087 68 GSSLKTAYTALQAWKSAITDDPLRILDTWVGDNVC----SYKGIFCSDLG-AQGPVVAGIDLNHANLQGNLVKELSLLTD 142 (414)
Q Consensus 68 ~~~~~~~~~~L~~~~~~~~~~~~~~l~~w~~~~~c----~~~gv~c~~~~-~~~~~l~~L~L~~n~l~~~~~~~l~~l~~ 142 (414)
..+.+.+..+|+.+|+.+. ++.. .+|.+..|| .|.||.|.... .....++.|+|++|.+.+.+|..+..+++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~-~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~ 443 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLG-LPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRH 443 (623)
T ss_pred cccCchHHHHHHHHHHhcC-Cccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCC
Confidence 4557788999999999885 3322 479764332 79999996311 11235999999999999999999999999
Q ss_pred CCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhccc--cccccccc
Q 039087 143 VNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNK--KLDAIFVN 220 (414)
Q Consensus 143 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~--~L~~L~l~ 220 (414)
|+.|+|++|.+++.+|..+..+++|++|+|++|++++.+|+.+..+++|++|+|++|.++|.+|..+... ++..+++.
T Consensus 444 L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999877653 25566666
Q ss_pred cccc
Q 039087 221 NNQF 224 (414)
Q Consensus 221 ~n~l 224 (414)
+|..
T Consensus 524 ~N~~ 527 (623)
T PLN03150 524 DNAG 527 (623)
T ss_pred CCcc
Confidence 6653
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.43 E-value=1.6e-13 Score=135.01 Aligned_cols=193 Identities=31% Similarity=0.498 Sum_probs=115.1
Q ss_pred EEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCC-CCCEEeCcCccCCCCCchhccCCCCCCEEecccc
Q 039087 121 GIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLT-SLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFN 199 (414)
Q Consensus 121 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 199 (414)
.+++..+.+.... ..+..++.++.|++.+|.++ .++.....+. +|++|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4566666653222 23445567777777777777 5555555553 7777777777777 55556677777777777777
Q ss_pred cCCCCCCchh-cccccccccccccccccccCcccCCC-CCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCc
Q 039087 200 SFSGPLPQDL-FNKKLDAIFVNNNQFSGELPQNLGNS-PASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIP 277 (414)
Q Consensus 200 ~i~~~~p~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~ 277 (414)
+++ .+|... ....|+.|++++|++. .+|...... .|++|.+++|++. .++..+... .++..+.+.+|++. .++
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~-~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNL-KNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhc-ccccccccCCceee-ecc
Confidence 777 566555 3334666666666666 555544332 3666666666443 344444443 45555666666655 334
Q ss_pred cccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCC
Q 039087 278 EGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGE 323 (414)
Q Consensus 278 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 323 (414)
..+..++++++|++++|.++. ++. +..+.++++|++++|.+...
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred chhccccccceeccccccccc-ccc-ccccCccCEEeccCcccccc
Confidence 555566666666666666652 222 55566666666666666533
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.42 E-value=2.1e-13 Score=134.15 Aligned_cols=197 Identities=30% Similarity=0.414 Sum_probs=158.7
Q ss_pred CEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCC-CCCEEecccccCCCCCCchhcccc-cccccccc
Q 039087 144 NLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIP-NLVYLDLRFNSFSGPLPQDLFNKK-LDAIFVNN 221 (414)
Q Consensus 144 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~l~~ 221 (414)
..+++..|.+.. ....+..++.++.|++.+|.++ .++.....+. +|++|++++|++. .+|..+.... |+.|++++
T Consensus 96 ~~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 368888888752 2334556688999999999999 7777777774 9999999999998 7776666655 99999999
Q ss_pred cccccccCccc-CCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCC
Q 039087 222 NQFSGELPQNL-GNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHL 300 (414)
Q Consensus 222 n~l~~~~~~~~-~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 300 (414)
|+++ .+|... ....|+.|++++|++. .+|..+.. ...|++|.+++|.+. ..+..+..++++..+.+.+|++. .+
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~ 247 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL 247 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence 9999 666655 5567899999999999 88887543 356999999999654 46677888889999999999987 45
Q ss_pred cccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchh
Q 039087 301 PDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQE 350 (414)
Q Consensus 301 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 350 (414)
+..+..++.+++|++++|.++ .++. +..+.++++|++++|.+...++.
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 777888889999999999998 5554 88889999999999998876554
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.35 E-value=2.1e-13 Score=124.76 Aligned_cols=135 Identities=19% Similarity=0.155 Sum_probs=102.2
Q ss_pred CCCCEEEcccCcCCCCCc---hhhhhcccCCcEEEccCCcCccc----CccccCCCCCCCEEEccCCCCCCC----Cccc
Q 039087 235 SPASVINLANNRLSGSIP---ASFGITNSKLKEILFLNNQLTGC----IPEGVGLFSEMQVFDVSFNSLMGH----LPDT 303 (414)
Q Consensus 235 ~~L~~L~ls~N~l~~~~p---~~~~~~~~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~ 303 (414)
.+|+++...+|++...-- ...++..+.|+++.++.|.|... +...|..+++|++|||.+|.|+.. +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 468999999999873221 22334457899999999988622 235677899999999999999742 4456
Q ss_pred ccCCCCCcEEEcccCCCCCCCchhh-----hCCCCCCeEecccccCcccc----hhhhhhcccCcEEEecCCCCC
Q 039087 304 ISCMSDIEILNLAHNQLSGELPDLV-----CSLRTLMNLTVAFNFFSGFS----QECARLLIRNVGFDFSANCIP 369 (414)
Q Consensus 304 l~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~~----~~~~~~~~~L~~L~ls~N~l~ 369 (414)
+..+++|++|++++|.++..-...| ...++|++|.+.+|.|+..- ..+....+.|..|+|++|.+.
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 6778899999999999986543332 24689999999999998642 345556788999999999994
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.5e-13 Score=129.08 Aligned_cols=212 Identities=20% Similarity=0.205 Sum_probs=126.7
Q ss_pred CCCCCCCEEECCCCcCCccCc--cccCCCCCCCEEeCcCccCCCCC--chhccCCCCCCEEecccccCCCCCCchhcccc
Q 039087 138 SLLTDVNLLHLNTNRFSGTVP--ETFKDLTSLQELDLSNNQFSGPF--PLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKK 213 (414)
Q Consensus 138 ~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~ 213 (414)
+++.+|+.+.|.+..+. ..+ .....+++++.||||.|-+.... -.....+++|+.|+|+.|++.......
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~----- 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN----- 191 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-----
Confidence 45888899999888876 223 35667899999999999877332 244567899999999999987221111
Q ss_pred cccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccC
Q 039087 214 LDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSF 293 (414)
Q Consensus 214 L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 293 (414)
.+. ...+++.|.++.|.++..-...+...+|+|+.|+|..|...........-+..|+.|||++
T Consensus 192 ----------~~~------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 192 ----------TTL------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN 255 (505)
T ss_pred ----------chh------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC
Confidence 110 1134566666666666443344444456677777776642222223334455677777777
Q ss_pred CCCCCCC-cccccCCCCCcEEEcccCCCCCC-Cchh-----hhCCCCCCeEecccccCcccch-hhhhhcccCcEEEecC
Q 039087 294 NSLMGHL-PDTISCMSDIEILNLAHNQLSGE-LPDL-----VCSLRTLMNLTVAFNFFSGFSQ-ECARLLIRNVGFDFSA 365 (414)
Q Consensus 294 N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~-~p~~-----l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~L~~L~ls~ 365 (414)
|++.... -...+.++.|+.|+++.+.|... .|+. ...+++|++|++..|+|..... .-+..+++|+.|.+..
T Consensus 256 N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 256 NNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred CcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 7665221 13345666677777777766632 2222 2345667777777777765432 2344455666666667
Q ss_pred CCCCCC
Q 039087 366 NCIPGR 371 (414)
Q Consensus 366 N~l~~~ 371 (414)
|+|+..
T Consensus 336 n~ln~e 341 (505)
T KOG3207|consen 336 NYLNKE 341 (505)
T ss_pred cccccc
Confidence 776654
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.32 E-value=2.7e-13 Score=121.65 Aligned_cols=205 Identities=18% Similarity=0.219 Sum_probs=135.6
Q ss_pred CCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccccccccccc-cccccccCcccCC-CCCCE
Q 039087 162 KDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNN-NQFSGELPQNLGN-SPASV 239 (414)
Q Consensus 162 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l~~-n~l~~~~~~~~~~-~~L~~ 239 (414)
.-+.+|+++.+|++.-. .|-+....-+.|+++.+.+..++ ..|.-+-...+....... .-.+|..-..+.. ..|++
T Consensus 211 ~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte 288 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTE 288 (490)
T ss_pred HHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc-ccccccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence 34466677777666533 22222223366777777766654 222211111111111111 1111111111111 23889
Q ss_pred EEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCC
Q 039087 240 INLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQ 319 (414)
Q Consensus 240 L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 319 (414)
+|+++|.|+ .+.++.. +.|.++.|++++|.|. .+ ..+..+++|+.||||+|.++ .+..+-..+-+++.|.|+.|.
T Consensus 289 lDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 289 LDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred ccccccchh-hhhhhhh-hccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhh
Confidence 999999998 7777664 3589999999999998 33 34788999999999999998 555555667889999999999
Q ss_pred CCCCCchhhhCCCCCCeEecccccCcccch-hhhhhcccCcEEEecCCCCCCCCCCC
Q 039087 320 LSGELPDLVCSLRTLMNLTVAFNFFSGFSQ-ECARLLIRNVGFDFSANCIPGRDMQR 375 (414)
Q Consensus 320 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~L~~L~ls~N~l~~~~~~~ 375 (414)
|. .+ ..+..+.+|..||+++|+|..... ..+..++-|+.+.|.+|+|.+.+..+
T Consensus 364 iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYR 418 (490)
T KOG1259|consen 364 IE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYR 418 (490)
T ss_pred Hh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHH
Confidence 97 33 457788999999999999987643 35677888999999999999887654
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.24 E-value=6.9e-12 Score=107.57 Aligned_cols=132 Identities=23% Similarity=0.251 Sum_probs=47.9
Q ss_pred ccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccc-c
Q 039087 227 ELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTI-S 305 (414)
Q Consensus 227 ~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~ 305 (414)
.++......++++|+|++|.|+ .+ +.+...+.+|+.|++++|.|+. + +.+..++.|+.|++++|+|+. +.+.+ .
T Consensus 11 ~~~~~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~ 85 (175)
T PF14580_consen 11 QIAQYNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDK 85 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHH
T ss_pred cccccccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHH
Confidence 3444444456777888888777 44 3444334678888888888873 3 346678888888888888884 44334 3
Q ss_pred CCCCCcEEEcccCCCCCC-CchhhhCCCCCCeEecccccCcccch---hhhhhcccCcEEEe
Q 039087 306 CMSDIEILNLAHNQLSGE-LPDLVCSLRTLMNLTVAFNFFSGFSQ---ECARLLIRNVGFDF 363 (414)
Q Consensus 306 ~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~---~~~~~~~~L~~L~l 363 (414)
.+++|++|+|++|+|... .-..+..+++|++|+|.+|.++.... ..+..+|+|+.||-
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 578888888888888742 12456678888888888888886532 35667788877664
No 32
>PLN03150 hypothetical protein; Provisional
Probab=99.24 E-value=3.2e-11 Score=124.83 Aligned_cols=109 Identities=24% Similarity=0.410 Sum_probs=90.5
Q ss_pred CcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEeccc
Q 039087 262 LKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAF 341 (414)
Q Consensus 262 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 341 (414)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|..+..+++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67788888888888888888888888888888888888888888888888889988888888888888888888888888
Q ss_pred ccCcccchhhhhhc-ccCcEEEecCCCCCC
Q 039087 342 NFFSGFSQECARLL-IRNVGFDFSANCIPG 370 (414)
Q Consensus 342 N~l~~~~~~~~~~~-~~L~~L~ls~N~l~~ 370 (414)
|.+++.+|..+... .++..+++.+|+..+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 88888877765542 456678888886543
No 33
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.17 E-value=1.5e-12 Score=128.73 Aligned_cols=242 Identities=19% Similarity=0.168 Sum_probs=141.8
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEec
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDL 196 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 196 (414)
..+..+++..|.+.. +-..+..+++|+.|++.+|+|. .+...+..+++|++|+|++|.|+...+ +..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence 345556666666653 2234666777777888888777 333335667777888888887774422 445666777788
Q ss_pred ccccCCCCCCchhcccccccccccccccccccCc-ccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCccc
Q 039087 197 RFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQ-NLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGC 275 (414)
Q Consensus 197 s~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~ 275 (414)
++|.|+ .+...-....|+.+++++|.+...-+. .-...+++.+++.+|.+...-.... ...+..+++..|.++..
T Consensus 148 ~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~---~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 148 SGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDL---LKKLVLLSLLDNKISKL 223 (414)
T ss_pred ccCcch-hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHH---HHHHHHhhcccccceec
Confidence 887776 444333334477777777777632221 1233456677777776652211111 13444456667766622
Q ss_pred CccccCCCCC--CCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccch---h
Q 039087 276 IPEGVGLFSE--MQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQ---E 350 (414)
Q Consensus 276 ~~~~~~~l~~--L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~---~ 350 (414)
- .+..+.. |+.+++++|.+. ..+..+..+..+..|++++|++... ..+...+.+..+.+..|.+..... .
T Consensus 224 ~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (414)
T KOG0531|consen 224 E--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQE 298 (414)
T ss_pred c--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcc
Confidence 1 1122222 777777777776 3435566667777777777777632 224455566667777776663311 1
Q ss_pred -hhhhcccCcEEEecCCCCCCC
Q 039087 351 -CARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 351 -~~~~~~~L~~L~ls~N~l~~~ 371 (414)
.....+.++.+.+..|++...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 299 YITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred ccccccccccccccccCccccc
Confidence 133345667777777777765
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=5.3e-11 Score=102.12 Aligned_cols=123 Identities=22% Similarity=0.320 Sum_probs=46.2
Q ss_pred ccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccC-CCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCC
Q 039087 243 ANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVG-LFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLS 321 (414)
Q Consensus 243 s~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 321 (414)
..+.|. .++.... ..++++|+|.+|.|+ .+ +.++ .+.+|+.|++++|.|+. +. .+..++.|++|++++|+|+
T Consensus 5 t~~~i~-~~~~~~n--~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 5 TANMIE-QIAQYNN--PVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp ------------------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---
T ss_pred cccccc-ccccccc--ccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC
Confidence 334444 4444333 247899999999998 33 3455 57899999999999984 33 5778999999999999999
Q ss_pred CCCchhh-hCCCCCCeEecccccCcccch-hhhhhcccCcEEEecCCCCCCCCC
Q 039087 322 GELPDLV-CSLRTLMNLTVAFNFFSGFSQ-ECARLLIRNVGFDFSANCIPGRDM 373 (414)
Q Consensus 322 ~~~p~~l-~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~L~~L~ls~N~l~~~~~ 373 (414)
.+...+ ..+++|++|+|++|+|..... ..+..+++|+.|++.+|+++..+.
T Consensus 78 -~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~ 130 (175)
T PF14580_consen 78 -SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN 130 (175)
T ss_dssp -S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTT
T ss_pred -ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhh
Confidence 565545 468999999999999988643 466778999999999999986543
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=7.3e-12 Score=117.83 Aligned_cols=189 Identities=21% Similarity=0.245 Sum_probs=131.0
Q ss_pred CCCCCCCEEeCcCccCCCCCc--hhccCCCCCCEEecccccCCCCCCchhcccccccccccccccccccCcccCCCCCCE
Q 039087 162 KDLTSLQELDLSNNQFSGPFP--LVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASV 239 (414)
Q Consensus 162 ~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~ 239 (414)
+++.+|+.+.|.+..+. ..+ .....|++++.|||++|-+....+ .. .+.+ ..++|+.
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~-v~-----------------~i~e--qLp~Le~ 176 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFP-VL-----------------KIAE--QLPSLEN 176 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHH-HH-----------------HHHH--hcccchh
Confidence 46788999999888877 334 356778999999999998872211 11 0000 1134555
Q ss_pred EEcccCcCCCCCchhhhhcccCCcEEEccCCcCccc-CccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccC
Q 039087 240 INLANNRLSGSIPASFGITNSKLKEILFLNNQLTGC-IPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHN 318 (414)
Q Consensus 240 L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 318 (414)
|+++.|++...........++.|+.|.|+.|.++.. +...+..+++|+.|+|+.|...........-+..|++|||++|
T Consensus 177 LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N 256 (505)
T KOG3207|consen 177 LNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN 256 (505)
T ss_pred cccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC
Confidence 556555554322222222358899999999999732 2334557899999999999643344444556788999999999
Q ss_pred CCCCCCc--hhhhCCCCCCeEecccccCcccc-hhh-----hhhcccCcEEEecCCCCCCCC
Q 039087 319 QLSGELP--DLVCSLRTLMNLTVAFNFFSGFS-QEC-----ARLLIRNVGFDFSANCIPGRD 372 (414)
Q Consensus 319 ~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~-~~~-----~~~~~~L~~L~ls~N~l~~~~ 372 (414)
++- ..+ .....++.|+.|+++.+.|..+- +++ ....++|++|+++.|+|...+
T Consensus 257 ~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 257 NLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred ccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 998 444 34567899999999999988762 222 355688999999999996653
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=1.9e-11 Score=112.17 Aligned_cols=228 Identities=17% Similarity=0.204 Sum_probs=164.2
Q ss_pred CCcEEEEEcCCCCCCCc----cccccCCCCCCCEEECCCC---cCCccCccc-------cCCCCCCCEEeCcCccCCCCC
Q 039087 116 GPVVAGIDLNHANLQGN----LVKELSLLTDVNLLHLNTN---RFSGTVPET-------FKDLTSLQELDLSNNQFSGPF 181 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n---~l~~~~p~~-------~~~l~~L~~L~Ls~N~l~~~~ 181 (414)
...++.|+|++|.+... +...+...++|+..++++- +....+|++ +...++|++||||+|-|.-..
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 34699999999998633 4455677889999998864 223345544 345679999999999987444
Q ss_pred ch----hccCCCCCCEEecccccCCCCCCchh---------------cccccccccccccccccccCc----ccCC-CCC
Q 039087 182 PL----VTLYIPNLVYLDLRFNSFSGPLPQDL---------------FNKKLDAIFVNNNQFSGELPQ----NLGN-SPA 237 (414)
Q Consensus 182 p~----~~~~l~~L~~L~Ls~N~i~~~~p~~~---------------~~~~L~~L~l~~n~l~~~~~~----~~~~-~~L 237 (414)
+. .+..+..|++|.|.+|.+. ...... ....|+.++..+|++...-.. .+.. ..|
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 43 3456889999999999986 222111 124499999999998743221 2222 468
Q ss_pred CEEEcccCcCCCCC----chhhhhcccCCcEEEccCCcCccc----CccccCCCCCCCEEEccCCCCCCCCcccc-----
Q 039087 238 SVINLANNRLSGSI----PASFGITNSKLKEILFLNNQLTGC----IPEGVGLFSEMQVFDVSFNSLMGHLPDTI----- 304 (414)
Q Consensus 238 ~~L~ls~N~l~~~~----p~~~~~~~~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l----- 304 (414)
+.+.++.|.|.-.- ...+. .+++|+.|+|.+|-++.. +...+..+++|+.|++++|.+...-...|
T Consensus 188 eevr~~qN~I~~eG~~al~eal~-~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~ 266 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALE-HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK 266 (382)
T ss_pred ceEEEecccccCchhHHHHHHHH-hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence 99999999886321 12333 369999999999998732 34667788999999999999975433332
Q ss_pred cCCCCCcEEEcccCCCCCC----CchhhhCCCCCCeEecccccCc
Q 039087 305 SCMSDIEILNLAHNQLSGE----LPDLVCSLRTLMNLTVAFNFFS 345 (414)
Q Consensus 305 ~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~ 345 (414)
...+.|++|.|.+|.|+.. +...+...+.|..|+|+.|.+.
T Consensus 267 ~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 267 ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 3368999999999999843 3344567899999999999994
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.08 E-value=1.1e-11 Score=122.47 Aligned_cols=223 Identities=22% Similarity=0.256 Sum_probs=124.2
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
...++.|++.+|.+..+. ..+..+++|++|+|++|.|+... .+..++.|+.|++++|.|+.. ..+..+++|+.++
T Consensus 94 ~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD 168 (414)
T ss_pred ccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence 456777777777776432 12566777777777777776432 245566677777777777632 2344467777777
Q ss_pred cccccCCCCCCch--hcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCc
Q 039087 196 LRFNSFSGPLPQD--LFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLT 273 (414)
Q Consensus 196 Ls~N~i~~~~p~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~ 273 (414)
+++|++. .+... -....++.+++.+|.+. .+...-....+..+++..|.++..-+..... ...|+++++++|.+.
T Consensus 169 l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~-~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~-~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 169 LSYNRIV-DIENDELSELISLEELDLGGNSIR-EIEGLDLLKKLVLLSLLDNKISKLEGLNELV-MLHLRELYLSGNRIS 245 (414)
T ss_pred CCcchhh-hhhhhhhhhccchHHHhccCCchh-cccchHHHHHHHHhhcccccceeccCcccch-hHHHHHHhcccCccc
Confidence 7777776 44431 22234777777777665 2221111223444466666665211111100 012677777777776
Q ss_pred ccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCC---Cchh-hhCCCCCCeEecccccCcccch
Q 039087 274 GCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGE---LPDL-VCSLRTLMNLTVAFNFFSGFSQ 349 (414)
Q Consensus 274 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~L~~N~l~~~~~ 349 (414)
..+..+..+..+..|++.+|++... ..+.....+..+.+..|.+... .... ....+.++.+.+..|.+....+
T Consensus 246 -~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 246 -RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred -cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 3334555666777777777776522 2233445556666666665521 1111 3345667777777777666443
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=3.6e-11 Score=108.16 Aligned_cols=184 Identities=22% Similarity=0.233 Sum_probs=122.2
Q ss_pred CchhccCCCCCCEEecccccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEccc-CcCCCCCchhhhhcc
Q 039087 181 FPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLAN-NRLSGSIPASFGITN 259 (414)
Q Consensus 181 ~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~-N~l~~~~p~~~~~~~ 259 (414)
+|-.+.-+.+|+.+.++.+.-....--....++|+.+.+.+..+. ..|..+....+....-.. .-..|.....+.. .
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~-~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dT-W 283 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQ-DVPSLLPETILADPSGSEPSTSNGSALVSADT-W 283 (490)
T ss_pred cccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccc-ccccccchhhhcCccCCCCCccCCceEEecch-H
Confidence 333444556777777777654422222233345777766665544 222222111111111100 1112222222221 1
Q ss_pred cCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEec
Q 039087 260 SKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTV 339 (414)
Q Consensus 260 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 339 (414)
..|+++||++|.|+ .+.+...-.+.++.|++|+|.|. .+- .+..+++|++||||+|.++ .+..+-..+-++++|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 57999999999998 77788888999999999999998 333 3888999999999999999 77777778999999999
Q ss_pred ccccCcccchhhhhhcccCcEEEecCCCCCCCC
Q 039087 340 AFNFFSGFSQECARLLIRNVGFDFSANCIPGRD 372 (414)
Q Consensus 340 ~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~ 372 (414)
+.|.|... +.+..+=+|..||+++|+|+...
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ld 390 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELD 390 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHH
Confidence 99998755 34566667899999999998653
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.02 E-value=7.5e-12 Score=124.22 Aligned_cols=133 Identities=22% Similarity=0.345 Sum_probs=103.3
Q ss_pred CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCccc-ccCCCCCcEE
Q 039087 235 SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDT-ISCMSDIEIL 313 (414)
Q Consensus 235 ~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L 313 (414)
.+|...+.++|.+. .+...+-- ++.++.|+|++|+++.. +.+..++.|++|||++|.++ .+|.. ...+ +|+.|
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLql-l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L 237 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQL-LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLL 237 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHH-HHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheee
Confidence 45788889999987 66666543 58899999999999843 37888999999999999998 45543 2333 49999
Q ss_pred EcccCCCCCCCchhhhCCCCCCeEecccccCcccch-hhhhhcccCcEEEecCCCCCCCCCCC
Q 039087 314 NLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQ-ECARLLIRNVGFDFSANCIPGRDMQR 375 (414)
Q Consensus 314 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~L~~L~ls~N~l~~~~~~~ 375 (414)
++++|.++ .+ ..+.++.+|+.||+++|-|.+... +.+..+..|+.|.|.+|++-..|..+
T Consensus 238 ~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hR 298 (1096)
T KOG1859|consen 238 NLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHR 298 (1096)
T ss_pred eecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHH
Confidence 99999998 43 457789999999999999887543 34555667889999999998877664
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=7e-10 Score=78.36 Aligned_cols=57 Identities=32% Similarity=0.479 Sum_probs=21.0
Q ss_pred CCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccc
Q 039087 286 MQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFN 342 (414)
Q Consensus 286 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 342 (414)
|++|++++|+|+...+..|..+++|++|++++|+|+...+..|..+++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 333333333333222233333333333333333333222233333333333333333
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=8.3e-10 Score=77.99 Aligned_cols=61 Identities=25% Similarity=0.316 Sum_probs=56.6
Q ss_pred CCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCC
Q 039087 308 SDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCI 368 (414)
Q Consensus 308 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l 368 (414)
++|++|++++|+|+...+..|..+++|++|++++|.++.+.+..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5799999999999955557899999999999999999999999999999999999999986
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.81 E-value=2.4e-09 Score=113.69 Aligned_cols=250 Identities=13% Similarity=0.136 Sum_probs=108.7
Q ss_pred cEEEEEcCCCC--CCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 118 VVAGIDLNHAN--LQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 118 ~l~~L~L~~n~--l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
.++.|-+..|. +.......|..++.|+.|||++|.=-+.+|..+++|-+|++|+|++..+. .+|..+.++..|.+||
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 34444444443 33222333445555555555554333355555555555555555555555 5555555555555555
Q ss_pred cccccCCCCCCchhcc-cccccccccccccccc--cCccc-CCCCCCEEEcccCcCCCCCchhh---hhcccCCcEEEcc
Q 039087 196 LRFNSFSGPLPQDLFN-KKLDAIFVNNNQFSGE--LPQNL-GNSPASVINLANNRLSGSIPASF---GITNSKLKEILFL 268 (414)
Q Consensus 196 Ls~N~i~~~~p~~~~~-~~L~~L~l~~n~l~~~--~~~~~-~~~~L~~L~ls~N~l~~~~p~~~---~~~~~~L~~L~Ls 268 (414)
+..+.....+|..... .+|++|.+........ .-..+ ...+|+.+....... .+-..+ ..+....+.+.+.
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhc
Confidence 5555443333333332 2255554433321100 00000 001122222211111 000000 0001111122222
Q ss_pred CCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccC------CCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccc
Q 039087 269 NNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISC------MSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFN 342 (414)
Q Consensus 269 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 342 (414)
.+... ..+..+..+.+|+.|.+.++.+.......... ++++..+...++..- ..+.+....++|+.|.+.++
T Consensus 703 ~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~ 780 (889)
T KOG4658|consen 703 GCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSC 780 (889)
T ss_pred ccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecc
Confidence 22222 33455666777888888777775322211111 112222222222221 22333345678888888877
Q ss_pred cCcccchhhhhhcccCcEEEecCCCCCCCC
Q 039087 343 FFSGFSQECARLLIRNVGFDFSANCIPGRD 372 (414)
Q Consensus 343 ~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~ 372 (414)
.....+......+..+..+-+..+.+.+.+
T Consensus 781 ~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~ 810 (889)
T KOG4658|consen 781 RLLEDIIPKLKALLELKELILPFNKLEGLR 810 (889)
T ss_pred cccccCCCHHHHhhhcccEEecccccccce
Confidence 766555544455545555666667776664
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.50 E-value=5.1e-08 Score=103.72 Aligned_cols=227 Identities=19% Similarity=0.230 Sum_probs=140.1
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
.+.++.|||++|.--+.+|..++.|-+|++|+|++..++ .+|..+.++..|.+|++.++.-...+|.....+++|++|.
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 688999999998777789999999999999999999999 8999999999999999999886656778888899999999
Q ss_pred cccccCC--CCCCchhcccc-cccccccccccccccCcccCCCC----CCEEEcccCcCCCCCchhhhhcccCCcEEEcc
Q 039087 196 LRFNSFS--GPLPQDLFNKK-LDAIFVNNNQFSGELPQNLGNSP----ASVINLANNRLSGSIPASFGITNSKLKEILFL 268 (414)
Q Consensus 196 Ls~N~i~--~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~----L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls 268 (414)
+...... ...-..+.... |+.+........ .+-+..+... .+.+.+..+... ..+..+.. +.+|+.|.+.
T Consensus 649 l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~-~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~-l~~L~~L~i~ 725 (889)
T KOG4658|consen 649 LPRSALSNDKLLLKELENLEHLENLSITISSVL-LLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGS-LGNLEELSIL 725 (889)
T ss_pred eeccccccchhhHHhhhcccchhhheeecchhH-hHhhhhhhHHHHHHhHhhhhcccccc-eeeccccc-ccCcceEEEE
Confidence 9876532 11111222111 444443222220 1111111111 123332223322 33334443 3788888888
Q ss_pred CCcCcccCccccCC------CCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccc
Q 039087 269 NNQLTGCIPEGVGL------FSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFN 342 (414)
Q Consensus 269 ~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 342 (414)
++.+.......... ++++..+...++..- ..+......++|+.|.+..+.....+.+....+..+.++-+..+
T Consensus 726 ~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~ 804 (889)
T KOG4658|consen 726 DCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN 804 (889)
T ss_pred cCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccc
Confidence 88776332222111 112222222222211 22233344578888888887776566666666666776667777
Q ss_pred cCccc
Q 039087 343 FFSGF 347 (414)
Q Consensus 343 ~l~~~ 347 (414)
.+.+.
T Consensus 805 ~~~~l 809 (889)
T KOG4658|consen 805 KLEGL 809 (889)
T ss_pred ccccc
Confidence 66665
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.44 E-value=7.6e-09 Score=83.02 Aligned_cols=107 Identities=17% Similarity=0.222 Sum_probs=60.2
Q ss_pred CCcEEEccCCcCcccCcccc-CCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEec
Q 039087 261 KLKEILFLNNQLTGCIPEGV-GLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTV 339 (414)
Q Consensus 261 ~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 339 (414)
.|+..+|++|.+. .+|+.| ..++.++.|+|++|+|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 4555566666665 233333 33445666666666666 55666666666666666666666 55555555666666666
Q ss_pred ccccCcccchhhhhhcccCcEEEecCCCCCCC
Q 039087 340 AFNFFSGFSQECARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 340 ~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~ 371 (414)
.+|.+..++...+.. ...-..++.++++.+.
T Consensus 131 ~~na~~eid~dl~~s-~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 131 PENARAEIDVDLFYS-SLPALIKLGNEPLGDE 161 (177)
T ss_pred CCCccccCcHHHhcc-ccHHHHHhcCCccccc
Confidence 666666555442221 1122344455666554
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.44 E-value=1.1e-07 Score=85.00 Aligned_cols=136 Identities=21% Similarity=0.133 Sum_probs=85.2
Q ss_pred CCCCEEEcccCcCCCCCchhh----hhcccCCcEEEccCCcCccc-----CccccCCCCCCCEEEccCCCCCCC----Cc
Q 039087 235 SPASVINLANNRLSGSIPASF----GITNSKLKEILFLNNQLTGC-----IPEGVGLFSEMQVFDVSFNSLMGH----LP 301 (414)
Q Consensus 235 ~~L~~L~ls~N~l~~~~p~~~----~~~~~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~----~p 301 (414)
++|+++.+..|++. ..+... ...-..|+++.+..|.|... +-..+..+.+|+.|||.+|-++.. +.
T Consensus 157 p~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 157 PKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 56888888888877 444322 22224788888888887622 112234567889999999888732 22
Q ss_pred ccccCCCCCcEEEcccCCCCCCCchhh------hCCCCCCeEecccccCcccch------hh-hhhcccCcEEEecCCCC
Q 039087 302 DTISCMSDIEILNLAHNQLSGELPDLV------CSLRTLMNLTVAFNFFSGFSQ------EC-ARLLIRNVGFDFSANCI 368 (414)
Q Consensus 302 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l------~~l~~L~~L~L~~N~l~~~~~------~~-~~~~~~L~~L~ls~N~l 368 (414)
..+..++.|++|.+..|-++..-...+ ...++|+.|-..+|.+.+-+. .+ -..++-|..|-+.+|.|
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 334456678888888888875433322 135788888888887765321 11 12345566667777777
Q ss_pred CCC
Q 039087 369 PGR 371 (414)
Q Consensus 369 ~~~ 371 (414)
...
T Consensus 316 ~E~ 318 (388)
T COG5238 316 KEL 318 (388)
T ss_pred hhH
Confidence 654
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.39 E-value=5.7e-09 Score=104.19 Aligned_cols=126 Identities=21% Similarity=0.267 Sum_probs=97.3
Q ss_pred cCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEec
Q 039087 260 SKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTV 339 (414)
Q Consensus 260 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 339 (414)
..|...+.++|.+. .....+.-++.|+.|+|++|+++... .+..+++|++|||++|.++ .+|..-..-.+|+.|.|
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence 46888899999998 56677888999999999999998443 7889999999999999999 66653222235999999
Q ss_pred ccccCcccchhhhhhcccCcEEEecCCCCCCCCCCCCC-----cccCCCCCCCcccc
Q 039087 340 AFNFFSGFSQECARLLIRNVGFDFSANCIPGRDMQRPQ-----PDCSQIPGGGLSCL 391 (414)
Q Consensus 340 ~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~-----~~~~~l~~~~l~c~ 391 (414)
++|.++... .+.++.+|..||+++|.|.+..--.|. ..-..+.|+++-|.
T Consensus 240 rnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 240 RNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred cccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 999998653 457788899999999999886433222 13345566666663
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.36 E-value=5.5e-08 Score=78.16 Aligned_cols=85 Identities=27% Similarity=0.391 Sum_probs=45.6
Q ss_pred CCCCCCCEEECCCCcCCccCccccC-CCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccc-cc
Q 039087 138 SLLTDVNLLHLNTNRFSGTVPETFK-DLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKK-LD 215 (414)
Q Consensus 138 ~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~ 215 (414)
....+|+..+|++|.+. .+|+.|. +++.+++|+|++|+|+ .+|..+..++.|+.|++++|.+. ..|+.++... +.
T Consensus 50 ~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred hCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 34445555556666555 3444433 2345556666666665 45555555666666666666655 5555555433 55
Q ss_pred cccccccccc
Q 039087 216 AIFVNNNQFS 225 (414)
Q Consensus 216 ~L~l~~n~l~ 225 (414)
.|+..+|.+.
T Consensus 127 ~Lds~~na~~ 136 (177)
T KOG4579|consen 127 MLDSPENARA 136 (177)
T ss_pred HhcCCCCccc
Confidence 5555555554
No 48
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.33 E-value=8.9e-07 Score=57.40 Aligned_cols=39 Identities=31% Similarity=0.738 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCCCCCcccCCCCCC---CCCCCCCceeeC
Q 039087 72 KTAYTALQAWKSAITDDPLRILDTWVG---DNVCSYKGIFCS 110 (414)
Q Consensus 72 ~~~~~~L~~~~~~~~~~~~~~l~~w~~---~~~c~~~gv~c~ 110 (414)
+.|+++|++||+++..+|...+.+|+. .++|+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 578999999999998778889999984 589999999995
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.6e-08 Score=89.95 Aligned_cols=193 Identities=17% Similarity=0.085 Sum_probs=109.9
Q ss_pred CCCEEeCcCccCCC-CCchhccCCCCCCEEecccccCCCCCCchhcccc-cccccccccc-cccccCc-ccC-CCCCCEE
Q 039087 166 SLQELDLSNNQFSG-PFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKK-LDAIFVNNNQ-FSGELPQ-NLG-NSPASVI 240 (414)
Q Consensus 166 ~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~l~~n~-l~~~~~~-~~~-~~~L~~L 240 (414)
.||+||||+..|+. .....+..+.+|+.|.|.++++...+...+.... |+.|+++.+. ++.---. .+. ...|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46777777666551 1233455566677777777776655555554433 7777766543 2210000 011 1347777
Q ss_pred EcccCcCCCCC-chhhhhcccCCcEEEccCCcCc---ccCccccCCCCCCCEEEccCCC-CCCCCcccccCCCCCcEEEc
Q 039087 241 NLANNRLSGSI-PASFGITNSKLKEILFLNNQLT---GCIPEGVGLFSEMQVFDVSFNS-LMGHLPDTISCMSDIEILNL 315 (414)
Q Consensus 241 ~ls~N~l~~~~-p~~~~~~~~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L 315 (414)
+++.+.+.... ........++|+.|+++++.-. ..+..-...+++|.+||||+|. ++...-..|..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 88777765332 2222223467888888776421 1222234567888889988774 44333445667888888888
Q ss_pred ccCCCCCCCchh---hhCCCCCCeEecccccCcccchhhhhhcccCcE
Q 039087 316 AHNQLSGELPDL---VCSLRTLMNLTVAFNFFSGFSQECARLLIRNVG 360 (414)
Q Consensus 316 s~N~l~~~~p~~---l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~ 360 (414)
+.|.. .+|.. +...+.|.+||+.++-=.+...-....+++|+.
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 88875 45554 456788999988776433222223344555543
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=2.9e-07 Score=83.25 Aligned_cols=226 Identities=17% Similarity=0.185 Sum_probs=128.2
Q ss_pred EEEEEcCCCCCCCccc-ccc-CCCCCCCEEECCCCcCCc--cCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEE
Q 039087 119 VAGIDLNHANLQGNLV-KEL-SLLTDVNLLHLNTNRFSG--TVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYL 194 (414)
Q Consensus 119 l~~L~L~~n~l~~~~~-~~l-~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 194 (414)
++-+.+.++.|..... ..| ...+.++++||.+|.|+. .+-..+.+|+.|++|+|+.|++...|-..-..+.+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 4445555555543221 112 236678888888888874 233345678888888888888874433221345678888
Q ss_pred ecccccCCCCCCchhcc--cccccccccccccccccCcc--cCC--CCCCEEEcccCcCC-CCCchhhhhcccCCcEEEc
Q 039087 195 DLRFNSFSGPLPQDLFN--KKLDAIFVNNNQFSGELPQN--LGN--SPASVINLANNRLS-GSIPASFGITNSKLKEILF 267 (414)
Q Consensus 195 ~Ls~N~i~~~~p~~~~~--~~L~~L~l~~n~l~~~~~~~--~~~--~~L~~L~ls~N~l~-~~~p~~~~~~~~~L~~L~L 267 (414)
-|.+..+.-.--..+.. +.+++|.++.|.+.-..-+. ... ..+++|+.-.|... +.--..+....+++..+.+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence 88777765222222222 22677777777543111111 111 12344444333221 0001122233477888888
Q ss_pred cCCcCccc-CccccCCCCCCCEEEccCCCCCCC-CcccccCCCCCcEEEcccCCCCCCCch------hhhCCCCCCeEec
Q 039087 268 LNNQLTGC-IPEGVGLFSEMQVFDVSFNSLMGH-LPDTISCMSDIEILNLAHNQLSGELPD------LVCSLRTLMNLTV 339 (414)
Q Consensus 268 s~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~L 339 (414)
..|.+... ..+.+..++.+..|+|+.|+|..- --+++..+++|..|.+++|.|.+.+.. .+..+++++.|+=
T Consensus 207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 88876532 224555667777888888888632 235677888888888998888743321 2467788888775
Q ss_pred ccccCcc
Q 039087 340 AFNFFSG 346 (414)
Q Consensus 340 ~~N~l~~ 346 (414)
+ +|+.
T Consensus 287 s--kIss 291 (418)
T KOG2982|consen 287 S--KISS 291 (418)
T ss_pred c--ccch
Confidence 5 5554
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.23 E-value=1.7e-07 Score=83.81 Aligned_cols=228 Identities=15% Similarity=0.220 Sum_probs=156.8
Q ss_pred CcEEEEEcCCCCCCCc----cccccCCCCCCCEEECCCCcC---CccCc-------cccCCCCCCCEEeCcCccCCCCCc
Q 039087 117 PVVAGIDLNHANLQGN----LVKELSLLTDVNLLHLNTNRF---SGTVP-------ETFKDLTSLQELDLSNNQFSGPFP 182 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l---~~~~p-------~~~~~l~~L~~L~Ls~N~l~~~~p 182 (414)
..++.+||++|.+... +...+.+-.+|+..+++.-.. ...++ +++.++++|+..+||.|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4688999999998644 334456678888888876432 22233 345678999999999999987766
Q ss_pred hh----ccCCCCCCEEecccccCCCCCC-----chhcc----------cccccccccccccccccCccc-----CC-CCC
Q 039087 183 LV----TLYIPNLVYLDLRFNSFSGPLP-----QDLFN----------KKLDAIFVNNNQFSGELPQNL-----GN-SPA 237 (414)
Q Consensus 183 ~~----~~~l~~L~~L~Ls~N~i~~~~p-----~~~~~----------~~L~~L~l~~n~l~~~~~~~~-----~~-~~L 237 (414)
+. +..-..|++|.|++|.+. .+. ..++. +.|+.++...|++.. .+... .. ..|
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~l 187 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENL 187 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCc
Confidence 54 456688999999999875 322 12211 349999999999873 22211 11 358
Q ss_pred CEEEcccCcCCCCC-----chhhhhcccCCcEEEccCCcCccc----CccccCCCCCCCEEEccCCCCCCCCcccc----
Q 039087 238 SVINLANNRLSGSI-----PASFGITNSKLKEILFLNNQLTGC----IPEGVGLFSEMQVFDVSFNSLMGHLPDTI---- 304 (414)
Q Consensus 238 ~~L~ls~N~l~~~~-----p~~~~~~~~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---- 304 (414)
+++.+..|.|.-.- ...++. +.+|+.|+|..|.++.. +...+..++.|+.|.+.+|-++..-...+
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 99999999886321 122233 47999999999998732 33456677889999999998875333222
Q ss_pred --cCCCCCcEEEcccCCCCCCCc------hhh-hCCCCCCeEecccccCccc
Q 039087 305 --SCMSDIEILNLAHNQLSGELP------DLV-CSLRTLMNLTVAFNFFSGF 347 (414)
Q Consensus 305 --~~l~~L~~L~Ls~N~l~~~~p------~~l-~~l~~L~~L~L~~N~l~~~ 347 (414)
...++|..|-..+|.+.+.+- ... ..++-|..|.+.+|.|...
T Consensus 267 ~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 267 NEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred hhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 235788999999998775321 111 3577888888999998865
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=2.9e-07 Score=83.31 Aligned_cols=211 Identities=19% Similarity=0.177 Sum_probs=107.3
Q ss_pred cCCCCCCCEEECCCCcCCccCc-ccc-CCCCCCCEEeCcCccCCC--CCchhccCCCCCCEEecccccCCCCCCchhcc-
Q 039087 137 LSLLTDVNLLHLNTNRFSGTVP-ETF-KDLTSLQELDLSNNQFSG--PFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFN- 211 (414)
Q Consensus 137 l~~l~~L~~L~Ls~n~l~~~~p-~~~-~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~- 211 (414)
+.....++.|.+.++.|...-. ..| ...+.++.|||.+|.|+. .+...+.++|.|++|+|+.|.+...|-..-..
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~ 120 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL 120 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence 3334456666777766652211 122 246789999999999984 34456778999999999999987433322122
Q ss_pred cccccccccccccccccCcccC-C-CCCCEEEcccCcCCC--CCchhhhhcccCCcEEEccCCcCcc--cCccccCCCCC
Q 039087 212 KKLDAIFVNNNQFSGELPQNLG-N-SPASVINLANNRLSG--SIPASFGITNSKLKEILFLNNQLTG--CIPEGVGLFSE 285 (414)
Q Consensus 212 ~~L~~L~l~~n~l~~~~~~~~~-~-~~L~~L~ls~N~l~~--~~p~~~~~~~~~L~~L~Ls~N~l~~--~~~~~~~~l~~ 285 (414)
.+|+.|.|.+..+...-...+. . +++++|+++.|.+.- ..........+.+++|.+..|.... ..-..-..+++
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 3366666666655432211111 1 234555555553220 0001111111233333333332110 00011122455
Q ss_pred CCEEEccCCCCCCCC-cccccCCCCCcEEEcccCCCCCC-CchhhhCCCCCCeEecccccCccc
Q 039087 286 MQVFDVSFNSLMGHL-PDTISCMSDIEILNLAHNQLSGE-LPDLVCSLRTLMNLTVAFNFFSGF 347 (414)
Q Consensus 286 L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~ 347 (414)
+..+-+-.|.+.... ...+..++.+..|+|+.|+|..- --+++..++.|..|.+++|.+.+.
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 566666666554321 22334455556666776666521 123455666667777777766654
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.20 E-value=1.9e-06 Score=56.00 Aligned_cols=37 Identities=32% Similarity=0.510 Sum_probs=19.0
Q ss_pred CCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcc
Q 039087 309 DIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSG 346 (414)
Q Consensus 309 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 346 (414)
+|++|++++|+|+ .+|..+..+++|++|++++|+|+.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555 444445555555555555555553
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.20 E-value=5.6e-06 Score=79.89 Aligned_cols=135 Identities=13% Similarity=0.229 Sum_probs=75.9
Q ss_pred ccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCc-cCCCCCchhccCCCCCCEEecccc-cCCCCCCchhcccc
Q 039087 136 ELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNN-QFSGPFPLVTLYIPNLVYLDLRFN-SFSGPLPQDLFNKK 213 (414)
Q Consensus 136 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N-~i~~~~p~~~~~~~ 213 (414)
.+..+.+++.|++++|.++ .+|. + -.+|++|+++++ .++ .+|..+ .++|++|++++| .+. .+|. .
T Consensus 47 r~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~-----s 113 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPE-----S 113 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-cccc-----c
Confidence 3555788999999999888 5662 2 246999999874 444 666654 257888888887 444 4553 2
Q ss_pred cccccccccccc--cccCcccCCCCCCEEEcccCcCC--CCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEE
Q 039087 214 LDAIFVNNNQFS--GELPQNLGNSPASVINLANNRLS--GSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVF 289 (414)
Q Consensus 214 L~~L~l~~n~l~--~~~~~~~~~~~L~~L~ls~N~l~--~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 289 (414)
|+.|++..+... +.+|. .|+.|.+.+++.. ..+|.. +.++|++|++++|... .+|..+. .+|+.|
T Consensus 114 Le~L~L~~n~~~~L~~LPs-----sLk~L~I~~~n~~~~~~lp~~---LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L 182 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPN-----GLTSLSINSYNPENQARIDNL---ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSI 182 (426)
T ss_pred cceEEeCCCCCcccccCcc-----hHhheeccccccccccccccc---cCCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence 555555554432 12232 2455555332211 011211 2356666666666644 3333322 466666
Q ss_pred EccCC
Q 039087 290 DVSFN 294 (414)
Q Consensus 290 ~Ls~N 294 (414)
+++.+
T Consensus 183 ~ls~n 187 (426)
T PRK15386 183 TLHIE 187 (426)
T ss_pred Eeccc
Confidence 66655
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=3e-08 Score=89.59 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=27.3
Q ss_pred CCEEECCCCcCCcc-CccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEeccc
Q 039087 143 VNLLHLNTNRFSGT-VPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRF 198 (414)
Q Consensus 143 L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 198 (414)
|++|||+...|+.. .-..+..+.+|+.|.|.++++.+.+...+..-.+|+.|||+.
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 55555555544421 111233445555555555555555555555555555555554
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=2.1e-06 Score=55.82 Aligned_cols=36 Identities=47% Similarity=0.616 Sum_probs=18.7
Q ss_pred CCCEEeCcCccCCCCCchhccCCCCCCEEecccccCC
Q 039087 166 SLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFS 202 (414)
Q Consensus 166 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~ 202 (414)
+|++|++++|+|+ .+|..+.++++|++|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.14 E-value=3.1e-06 Score=72.62 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=72.8
Q ss_pred CEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccc
Q 039087 238 SVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAH 317 (414)
Q Consensus 238 ~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 317 (414)
+.+++.+.++. .+ ..++........+||++|.+.. -..|..++.|..|.|.+|+|+.+.|.--..+++|..|.|.+
T Consensus 22 ~e~~LR~lkip-~i-enlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIP-VI-ENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccc-ch-hhccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 44555555543 21 2233334566677777777652 23456667777777777777755555444556677777777
Q ss_pred CCCCCCCc--hhhhCCCCCCeEecccccCcccch---hhhhhcccCcEEEecC
Q 039087 318 NQLSGELP--DLVCSLRTLMNLTVAFNFFSGFSQ---ECARLLIRNVGFDFSA 365 (414)
Q Consensus 318 N~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~~---~~~~~~~~L~~L~ls~ 365 (414)
|.|. .+- +-+..++.|++|.+-+|.++...- -.+..+++|++||+..
T Consensus 98 Nsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 98 NSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 7776 321 224566777777777777665422 2345566777777654
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=2.8e-05 Score=75.10 Aligned_cols=138 Identities=14% Similarity=0.221 Sum_probs=87.5
Q ss_pred cCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhccccccccccccc-ccccccCcccCCCCCCE
Q 039087 161 FKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNNN-QFSGELPQNLGNSPASV 239 (414)
Q Consensus 161 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~L~~ 239 (414)
+..+.++++|++++|.|+ .+|. -..+|++|+++++.-...+|..+ ...|+.|++++| .+. .+|. .|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~-sLP~-----sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEIS-GLPE-----SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccc-cccc-----ccce
Confidence 445688999999999888 6662 23479999998744333667544 346999999988 444 4553 4677
Q ss_pred EEcccCcCCCCCchhhhhcccCCcEEEccCCcCc--ccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccc
Q 039087 240 INLANNRLSGSIPASFGITNSKLKEILFLNNQLT--GCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAH 317 (414)
Q Consensus 240 L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 317 (414)
|++..+... .+ ..+.++|++|.+.+++.. ..++.. -.++|++|++++|... ..|..+. .+|+.|+++.
T Consensus 117 L~L~~n~~~-~L----~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSATD-SI----KNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred EEeCCCCCc-cc----ccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 887766543 22 222356777777543311 011111 1257889999888765 4454443 5788888877
Q ss_pred CC
Q 039087 318 NQ 319 (414)
Q Consensus 318 N~ 319 (414)
+.
T Consensus 187 n~ 188 (426)
T PRK15386 187 EQ 188 (426)
T ss_pred cc
Confidence 64
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.93 E-value=5.5e-06 Score=86.21 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=95.1
Q ss_pred CCCCEEEcccCc-CCCCCchhhhhcccCCcEEEccCCcCcc-cCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcE
Q 039087 235 SPASVINLANNR-LSGSIPASFGITNSKLKEILFLNNQLTG-CIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEI 312 (414)
Q Consensus 235 ~~L~~L~ls~N~-l~~~~p~~~~~~~~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 312 (414)
.+|++||+++.. +...-|..++..+|+|+.|.+++-.+.. .......++++|..||+|+.+++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 346777776654 2334566777778889998888876642 2234456788899999999888733 66788888888
Q ss_pred EEcccCCCCC-CCchhhhCCCCCCeEecccccCcccc--h----hhhhhcccCcEEEecCCCCCCCC
Q 039087 313 LNLAHNQLSG-ELPDLVCSLRTLMNLTVAFNFFSGFS--Q----ECARLLIRNVGFDFSANCIPGRD 372 (414)
Q Consensus 313 L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~--~----~~~~~~~~L~~L~ls~N~l~~~~ 372 (414)
|.+.+=.+.. ..-..+..|++|+.||+|..+..... . ++...+|+|+.||.|++.+.+.-
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 8888877763 12234567889999999887655433 1 34456788899999988777653
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.64 E-value=8.7e-05 Score=63.94 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=80.1
Q ss_pred CcEEEccCCcCcccCccccC-CCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecc
Q 039087 262 LKEILFLNNQLTGCIPEGVG-LFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVA 340 (414)
Q Consensus 262 L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 340 (414)
=++++|.+.++. .+.. ++ ...+...+||++|.+.. -..|..++.|..|.|.+|+|+..-|..-..+++|+.|.|.
T Consensus 21 e~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc-chhh-ccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 456777777765 2222 22 24567889999999862 3457788899999999999996666655667889999999
Q ss_pred cccCcccch-hhhhhcccCcEEEecCCCCCCCCCC
Q 039087 341 FNFFSGFSQ-ECARLLIRNVGFDFSANCIPGRDMQ 374 (414)
Q Consensus 341 ~N~l~~~~~-~~~~~~~~L~~L~ls~N~l~~~~~~ 374 (414)
+|.|..+.. +-+..++.|++|-+-+|+++...-.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~Y 131 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNY 131 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCc
Confidence 999887632 3345667899999999999876544
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=8.2e-05 Score=77.62 Aligned_cols=136 Identities=9% Similarity=0.146 Sum_probs=90.8
Q ss_pred ccccccccccccc-cccCcccCC--CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEE
Q 039087 213 KLDAIFVNNNQFS-GELPQNLGN--SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVF 289 (414)
Q Consensus 213 ~L~~L~l~~n~l~-~~~~~~~~~--~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 289 (414)
+|++|++++.... ...+..++. +.|+.|.+.+-.+...--..+...+++|..||+|+.+++.. ..++.+++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 3777777664432 122333333 56888888887665333334444568899999999998833 667888899998
Q ss_pred EccCCCCCC-CCcccccCCCCCcEEEcccCCCCCCC--ch----hhhCCCCCCeEecccccCcccchh
Q 039087 290 DVSFNSLMG-HLPDTISCMSDIEILNLAHNQLSGEL--PD----LVCSLRTLMNLTVAFNFFSGFSQE 350 (414)
Q Consensus 290 ~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~----~l~~l~~L~~L~L~~N~l~~~~~~ 350 (414)
.+.+=.+.. ..-..+.++++|+.||+|..+..... .. .-..+|+|+.||.|+..+....-+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 888777653 22335667899999999987666321 11 123589999999998888876544
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.40 E-value=0.0001 Score=66.09 Aligned_cols=101 Identities=19% Similarity=0.190 Sum_probs=57.7
Q ss_pred cCCcEEEccCCcCcccCccccCCCCCCCEEEccCC--CCCCCCcccccCCCCCcEEEcccCCCCCCCc--hhhhCCCCCC
Q 039087 260 SKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFN--SLMGHLPDTISCMSDIEILNLAHNQLSGELP--DLVCSLRTLM 335 (414)
Q Consensus 260 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~ 335 (414)
..|+.+.+.+..++. -..|-.+++|++|+++.| ++.+.++.....+++|++|+++.|+|+. +. ..+..+.+|.
T Consensus 43 ~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 43 VELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELENLK 119 (260)
T ss_pred cchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhcchh
Confidence 345555555555541 123445667777777777 4444444444455777777777777762 11 1234566677
Q ss_pred eEecccccCcccc---hhhhhhcccCcEEEe
Q 039087 336 NLTVAFNFFSGFS---QECARLLIRNVGFDF 363 (414)
Q Consensus 336 ~L~L~~N~l~~~~---~~~~~~~~~L~~L~l 363 (414)
.|++.+|..+... ...|..+++|++||-
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 7777777665532 235666666666553
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.01 E-value=0.0005 Score=61.68 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=70.5
Q ss_pred CccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccC--CCCCCCchhhhCCCCCCeEecccccCcccch-hhh
Q 039087 276 IPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHN--QLSGELPDLVCSLRTLMNLTVAFNFFSGFSQ-ECA 352 (414)
Q Consensus 276 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~ 352 (414)
+....-.+..|+.|.+.+..++. -..|..+++|++|.++.| ++++.++.....+++|++|+++.|+|..+.. .-.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 33444456677777777777762 234667889999999999 7776666666677999999999999986321 245
Q ss_pred hhcccCcEEEecCCCCCCC
Q 039087 353 RLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 353 ~~~~~L~~L~ls~N~l~~~ 371 (414)
..+.+|..||+.++..+..
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNL 131 (260)
T ss_pred hhhcchhhhhcccCCcccc
Confidence 6677899999999988874
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=7.9e-05 Score=67.23 Aligned_cols=98 Identities=17% Similarity=0.177 Sum_probs=67.7
Q ss_pred cCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCch--hhhCCCCCCeE
Q 039087 260 SKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPD--LVCSLRTLMNL 337 (414)
Q Consensus 260 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L 337 (414)
.+.+.|++.++.+.++ .....++.|++|.||-|+|+..- .|..+++|++|+|..|.|. .+.+ .+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhH
Confidence 4566777777777632 23456778888888888887432 3567788888888888887 3332 35678888888
Q ss_pred ecccccCcccch-----hhhhhcccCcEEE
Q 039087 338 TVAFNFFSGFSQ-----ECARLLIRNVGFD 362 (414)
Q Consensus 338 ~L~~N~l~~~~~-----~~~~~~~~L~~L~ 362 (414)
.|..|.-.+... ..++.+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888776543 3566677777665
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.74 E-value=0.0045 Score=50.22 Aligned_cols=82 Identities=10% Similarity=0.109 Sum_probs=27.0
Q ss_pred ccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccC
Q 039087 279 GVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRN 358 (414)
Q Consensus 279 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L 358 (414)
.|..+++|+.+.+..+ +.......|..+.+|+.+.+.+ .+.......|..+++|+.+++..+ +..+....+... ++
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l 105 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL 105 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred hccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence 3444444444444432 3323333344444444444433 222122233333444444444433 333333334433 34
Q ss_pred cEEEec
Q 039087 359 VGFDFS 364 (414)
Q Consensus 359 ~~L~ls 364 (414)
+.+.+.
T Consensus 106 ~~i~~~ 111 (129)
T PF13306_consen 106 KEINIP 111 (129)
T ss_dssp -EEE-T
T ss_pred eEEEEC
Confidence 444443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=7.3e-05 Score=67.45 Aligned_cols=89 Identities=21% Similarity=0.148 Sum_probs=59.2
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCc-hhccCCCCCCEE
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFP-LVTLYIPNLVYL 194 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L 194 (414)
...++.|++-++.|.++ ....+++.|+.|.|+-|+|+..- .|..++.|++|+|..|.|...-. ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34566677777777654 23456778888888888887432 36677888888888888773211 235677888888
Q ss_pred ecccccCCCCCCch
Q 039087 195 DLRFNSFSGPLPQD 208 (414)
Q Consensus 195 ~Ls~N~i~~~~p~~ 208 (414)
.|..|.-.+.-+..
T Consensus 94 WL~ENPCc~~ag~n 107 (388)
T KOG2123|consen 94 WLDENPCCGEAGQN 107 (388)
T ss_pred hhccCCcccccchh
Confidence 88888776655543
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.57 E-value=0.0049 Score=49.98 Aligned_cols=116 Identities=13% Similarity=0.126 Sum_probs=65.8
Q ss_pred CCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEc
Q 039087 236 PASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNL 315 (414)
Q Consensus 236 ~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 315 (414)
+|+.+.+.. .+. .+....+..+++|+.+.+..+ +...-...|..+++|+.+.+.+ .+.......|..+.+|+.+++
T Consensus 13 ~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 13 NLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp T--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 688999875 566 677776766678999999875 6544556788888899999976 554355667788999999999
Q ss_pred ccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccC
Q 039087 316 AHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRN 358 (414)
Q Consensus 316 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L 358 (414)
..+ +...-...|... +|+.+.+.. .+..+...+|...++|
T Consensus 89 ~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred Ccc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 876 653445567776 899999886 5666666777776555
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.16 E-value=5.8e-05 Score=75.42 Aligned_cols=88 Identities=19% Similarity=0.303 Sum_probs=48.3
Q ss_pred cCCcEEEccCCcCccc----CccccCCCCC-CCEEEccCCCCCCC----CcccccCC-CCCcEEEcccCCCCCCC----c
Q 039087 260 SKLKEILFLNNQLTGC----IPEGVGLFSE-MQVFDVSFNSLMGH----LPDTISCM-SDIEILNLAHNQLSGEL----P 325 (414)
Q Consensus 260 ~~L~~L~Ls~N~l~~~----~~~~~~~l~~-L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~----p 325 (414)
.++++|.+.+|.++.. +...+...+. +..|++.+|.+.+. ....+..+ ..+++++++.|.|+..- .
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 4566666666665521 1122333444 55577777776532 22233334 45677777777776432 3
Q ss_pred hhhhCCCCCCeEecccccCccc
Q 039087 326 DLVCSLRTLMNLTVAFNFFSGF 347 (414)
Q Consensus 326 ~~l~~l~~L~~L~L~~N~l~~~ 347 (414)
..+..++.++++.+++|.+...
T Consensus 284 ~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 284 EVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHhhhHHHHHhhcccCccccH
Confidence 3344556677777777776654
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.50 E-value=9.5e-05 Score=73.87 Aligned_cols=179 Identities=20% Similarity=0.168 Sum_probs=94.6
Q ss_pred EEEEEcCCCCCCCccc----cccCCCCCCCEEECCCCcCCccCc----cccCCC-CCCCEEeCcCccCCCC----Cchhc
Q 039087 119 VAGIDLNHANLQGNLV----KELSLLTDVNLLHLNTNRFSGTVP----ETFKDL-TSLQELDLSNNQFSGP----FPLVT 185 (414)
Q Consensus 119 l~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~~~~p----~~~~~l-~~L~~L~Ls~N~l~~~----~p~~~ 185 (414)
+..++|.+|.+..... ..+.....|+.|++++|.+.+.-- ..+... ..|++|++..|.++.. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6677788887765433 334567778888888888774321 122222 4567777777777643 44555
Q ss_pred cCCCCCCEEecccccCCC----CCCchhc-----ccccccccccccccccccCcc----cCC--CCCCEEEcccCcCCCC
Q 039087 186 LYIPNLVYLDLRFNSFSG----PLPQDLF-----NKKLDAIFVNNNQFSGELPQN----LGN--SPASVINLANNRLSGS 250 (414)
Q Consensus 186 ~~l~~L~~L~Ls~N~i~~----~~p~~~~-----~~~L~~L~l~~n~l~~~~~~~----~~~--~~L~~L~ls~N~l~~~ 250 (414)
.....++.++++.|.+.. .++..+. ..++++|.+.+|.++...... +.. ..+..|++.+|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 566778888888887731 1111121 122666777776665221110 000 1134466666665533
Q ss_pred Cchhhhhcc----cCCcEEEccCCcCcccC----ccccCCCCCCCEEEccCCCCC
Q 039087 251 IPASFGITN----SKLKEILFLNNQLTGCI----PEGVGLFSEMQVFDVSFNSLM 297 (414)
Q Consensus 251 ~p~~~~~~~----~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~ 297 (414)
.-..+...+ ..+++++++.|.|+..- ...+.....++++.+++|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 222221111 34456666666665322 223334455666666666654
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.39 E-value=0.0048 Score=33.39 Aligned_cols=12 Identities=50% Similarity=0.731 Sum_probs=4.9
Q ss_pred CCEEeCcCccCC
Q 039087 167 LQELDLSNNQFS 178 (414)
Q Consensus 167 L~~L~Ls~N~l~ 178 (414)
|++|||++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444444
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.20 E-value=0.00037 Score=61.43 Aligned_cols=84 Identities=24% Similarity=0.211 Sum_probs=72.7
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
..+++.||++.|.+. .+-..|+.++.|..|+++.|.+. ..|..+..+..++.+++..|..+ ..|.++...+++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 578999999999887 34456788889999999999998 77888888888999999999988 8899999999999999
Q ss_pred cccccCC
Q 039087 196 LRFNSFS 202 (414)
Q Consensus 196 Ls~N~i~ 202 (414)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9998865
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.15 E-value=0.0073 Score=32.64 Aligned_cols=12 Identities=42% Similarity=0.711 Sum_probs=5.2
Q ss_pred CcEEEcccCCCC
Q 039087 310 IEILNLAHNQLS 321 (414)
Q Consensus 310 L~~L~Ls~N~l~ 321 (414)
|++|||++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 73
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.44 E-value=0.0011 Score=63.31 Aligned_cols=84 Identities=14% Similarity=0.149 Sum_probs=52.3
Q ss_pred CcEEEEEcCCCCCCCccc--cccCCCCCCCEEECCCCc-CCccCcccc-CCCCCCCEEeCcCc-cCCCCCch-hccCCCC
Q 039087 117 PVVAGIDLNHANLQGNLV--KELSLLTDVNLLHLNTNR-FSGTVPETF-KDLTSLQELDLSNN-QFSGPFPL-VTLYIPN 190 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~--~~l~~l~~L~~L~Ls~n~-l~~~~p~~~-~~l~~L~~L~Ls~N-~l~~~~p~-~~~~l~~ 190 (414)
..++.|.+.++.=.+.-+ ......++++.|++.++. |++..-..+ ..+++|++|+|..+ .|+...-. ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 567888888875443321 123457888888888874 443222222 34688899988773 34433222 3345789
Q ss_pred CCEEeccccc
Q 039087 191 LVYLDLRFNS 200 (414)
Q Consensus 191 L~~L~Ls~N~ 200 (414)
|++|+++++.
T Consensus 218 L~~lNlSwc~ 227 (483)
T KOG4341|consen 218 LKYLNLSWCP 227 (483)
T ss_pred HHHhhhccCc
Confidence 9999998875
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.07 E-value=0.00089 Score=59.09 Aligned_cols=95 Identities=25% Similarity=0.260 Sum_probs=76.0
Q ss_pred CCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCch
Q 039087 129 LQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQD 208 (414)
Q Consensus 129 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~ 208 (414)
++.+...++..+...+.||++.|++. ..-..|..++.|..||++.|++. ..|..+..+..++.+++..|..+ ..|.+
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s 106 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKS 106 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcc
Confidence 33344556778888999999999887 45556777888999999999998 78888998889999999999988 78877
Q ss_pred hcccc-ccccccccccccc
Q 039087 209 LFNKK-LDAIFVNNNQFSG 226 (414)
Q Consensus 209 ~~~~~-L~~L~l~~n~l~~ 226 (414)
+.... ++++++..|.++.
T Consensus 107 ~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred ccccCCcchhhhccCcchH
Confidence 77654 8888888887653
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.42 E-value=0.046 Score=27.42 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=6.1
Q ss_pred cCcEEEecCCCCCCC
Q 039087 357 RNVGFDFSANCIPGR 371 (414)
Q Consensus 357 ~L~~L~ls~N~l~~~ 371 (414)
+|+.|++++|+|+.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 345555555555443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.32 E-value=0.056 Score=27.12 Aligned_cols=11 Identities=36% Similarity=0.739 Sum_probs=3.1
Q ss_pred CcEEEcccCCC
Q 039087 310 IEILNLAHNQL 320 (414)
Q Consensus 310 L~~L~Ls~N~l 320 (414)
|++|+|++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333333333
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.30 E-value=0.078 Score=29.76 Aligned_cols=20 Identities=50% Similarity=0.650 Sum_probs=10.2
Q ss_pred CCCCEEecccccCCCCCCchh
Q 039087 189 PNLVYLDLRFNSFSGPLPQDL 209 (414)
Q Consensus 189 ~~L~~L~Ls~N~i~~~~p~~~ 209 (414)
++|++|+|++|+|+ .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 34555555555555 444433
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.30 E-value=0.078 Score=29.76 Aligned_cols=20 Identities=50% Similarity=0.650 Sum_probs=10.2
Q ss_pred CCCCEEecccccCCCCCCchh
Q 039087 189 PNLVYLDLRFNSFSGPLPQDL 209 (414)
Q Consensus 189 ~~L~~L~Ls~N~i~~~~p~~~ 209 (414)
++|++|+|++|+|+ .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 34555555555555 444433
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.60 E-value=0.031 Score=56.14 Aligned_cols=109 Identities=20% Similarity=0.133 Sum_probs=49.4
Q ss_pred CCCCCEEeCcCccCCCC--CchhccCCCCCCEEeccccc-CCCCCCc---hhc--ccccccccccccc-cccccCcccC-
Q 039087 164 LTSLQELDLSNNQFSGP--FPLVTLYIPNLVYLDLRFNS-FSGPLPQ---DLF--NKKLDAIFVNNNQ-FSGELPQNLG- 233 (414)
Q Consensus 164 l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~-i~~~~p~---~~~--~~~L~~L~l~~n~-l~~~~~~~~~- 233 (414)
++.|+.|.+..+.-... +-.....+++|+.|+++.+. .....+. .+. -..|+.|+++.+. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45666666655432212 22334456667777766521 1101110 000 1225566665555 3322111111
Q ss_pred -CCCCCEEEcccCc-CCCCCchhhhhcccCCcEEEccCCcC
Q 039087 234 -NSPASVINLANNR-LSGSIPASFGITNSKLKEILFLNNQL 272 (414)
Q Consensus 234 -~~~L~~L~ls~N~-l~~~~p~~~~~~~~~L~~L~Ls~N~l 272 (414)
...|++|.+.++. ++..--..+...++.|++|+++.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 1346666655554 44443444444455666666665543
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.37 E-value=0.12 Score=28.98 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=9.5
Q ss_pred CCCCeEecccccCcccchhh
Q 039087 332 RTLMNLTVAFNFFSGFSQEC 351 (414)
Q Consensus 332 ~~L~~L~L~~N~l~~~~~~~ 351 (414)
++|++|+|++|+|+.+++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34455555555555444433
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.37 E-value=0.12 Score=28.98 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=9.5
Q ss_pred CCCCeEecccccCcccchhh
Q 039087 332 RTLMNLTVAFNFFSGFSQEC 351 (414)
Q Consensus 332 ~~L~~L~L~~N~l~~~~~~~ 351 (414)
++|++|+|++|+|+.+++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34455555555555444433
No 82
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=91.45 E-value=0.012 Score=56.37 Aligned_cols=266 Identities=14% Similarity=0.105 Sum_probs=141.5
Q ss_pred CCcEEEEEcCCCC-CCCcccccc-CCCCCCCEEECCCC-cCCccCccc-cCCCCCCCEEeCcCcc-CCCC-CchhccCCC
Q 039087 116 GPVVAGIDLNHAN-LQGNLVKEL-SLLTDVNLLHLNTN-RFSGTVPET-FKDLTSLQELDLSNNQ-FSGP-FPLVTLYIP 189 (414)
Q Consensus 116 ~~~l~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~Ls~N~-l~~~-~p~~~~~l~ 189 (414)
-+++++|++.++. ++...-..+ ...++|++|+|..+ .|+...-+. ...+++|++|+++++. |++. +...+.++.
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~ 242 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCK 242 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccch
Confidence 3678888888775 232222223 34788999999884 566443332 2467899999999975 4431 223445666
Q ss_pred CCCEEecccccCCCCCCchhcc------cccccccccccc-ccccc--CcccCCCCCCEEEcccCc-CCCCCchhhhhcc
Q 039087 190 NLVYLDLRFNSFSGPLPQDLFN------KKLDAIFVNNNQ-FSGEL--PQNLGNSPASVINLANNR-LSGSIPASFGITN 259 (414)
Q Consensus 190 ~L~~L~Ls~N~i~~~~p~~~~~------~~L~~L~l~~n~-l~~~~--~~~~~~~~L~~L~ls~N~-l~~~~p~~~~~~~ 259 (414)
.++.+.+.++. ..+..... ..+..+++..+. ++..- --.-....|++|+.++.. ++...-..+++..
T Consensus 243 ~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 243 ELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred hhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 67777666532 22211111 114455544543 22110 000112357788877654 3333445566666
Q ss_pred cCCcEEEccCCcC-cccCcccc-CCCCCCCEEEccCCCCCCC--CcccccCCCCCcEEEcccCCCCCCC-----chhhhC
Q 039087 260 SKLKEILFLNNQL-TGCIPEGV-GLFSEMQVFDVSFNSLMGH--LPDTISCMSDIEILNLAHNQLSGEL-----PDLVCS 330 (414)
Q Consensus 260 ~~L~~L~Ls~N~l-~~~~~~~~-~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~-----p~~l~~ 330 (414)
.+|+.|.++.++- +..-...+ .+.+.|+.+++..+..... +...-.+++.|++|.++++.+.... ...-..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 7888888887762 21111112 2356777777777654311 1112235577888888877553211 112234
Q ss_pred CCCCCeEecccccCcc-cchhhhhhcccCcEEEecCC-CCCCCCCCCCCcccCCCC
Q 039087 331 LRTLMNLTVAFNFFSG-FSQECARLLIRNVGFDFSAN-CIPGRDMQRPQPDCSQIP 384 (414)
Q Consensus 331 l~~L~~L~L~~N~l~~-~~~~~~~~~~~L~~L~ls~N-~l~~~~~~~~~~~~~~l~ 384 (414)
+..|..+.|+++.... ...+.+...++|+.+++-.. .++..+..+....|++..
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~ 455 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK 455 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence 5667777777776442 23344555566777666543 233333333333444433
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=87.01 E-value=0.43 Score=47.88 Aligned_cols=111 Identities=13% Similarity=0.077 Sum_probs=61.0
Q ss_pred CCCCEEEcccCcCCCCC-chhhhhcccCCcEEEccCC-cCcccC----ccccCCCCCCCEEEccCCC-CCCCCcccccC-
Q 039087 235 SPASVINLANNRLSGSI-PASFGITNSKLKEILFLNN-QLTGCI----PEGVGLFSEMQVFDVSFNS-LMGHLPDTISC- 306 (414)
Q Consensus 235 ~~L~~L~ls~N~l~~~~-p~~~~~~~~~L~~L~Ls~N-~l~~~~----~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~- 306 (414)
..++.|.+....-.... -..+....+.|++|+++.+ ...... ......+.+|+.|+++.+. +++..-..+..
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 34566666655322121 1233333577888888763 111111 1233345778888888777 55433333332
Q ss_pred CCCCcEEEcccCC-CCCC-CchhhhCCCCCCeEecccccCc
Q 039087 307 MSDIEILNLAHNQ-LSGE-LPDLVCSLRTLMNLTVAFNFFS 345 (414)
Q Consensus 307 l~~L~~L~Ls~N~-l~~~-~p~~l~~l~~L~~L~L~~N~l~ 345 (414)
+++|++|.+.++. +++. +-.....+++|++|+|+.+...
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 6778888877666 5533 2233445677888888877643
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.28 E-value=0.32 Score=26.60 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=6.9
Q ss_pred CCCCeEecccccCccc
Q 039087 332 RTLMNLTVAFNFFSGF 347 (414)
Q Consensus 332 ~~L~~L~L~~N~l~~~ 347 (414)
++|++|+|++|+|++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3455555555554433
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.30 E-value=0.16 Score=44.18 Aligned_cols=82 Identities=22% Similarity=0.184 Sum_probs=53.6
Q ss_pred cEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCC-ccCccccC-CCCCCCEEeCcCc-cCCCCCchhccCCCCCCEE
Q 039087 118 VVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFS-GTVPETFK-DLTSLQELDLSNN-QFSGPFPLVTLYIPNLVYL 194 (414)
Q Consensus 118 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~-~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L 194 (414)
.++.+|-++..|..+.-+.+..++.++.|.+.++.-- +.--+.++ -.++|+.|+|+.| +|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4788888888887776677777888888888776422 11111122 2478888888866 4664444456677778777
Q ss_pred ecccc
Q 039087 195 DLRFN 199 (414)
Q Consensus 195 ~Ls~N 199 (414)
.+.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 77543
No 86
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=83.19 E-value=1.1 Score=43.43 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=9.1
Q ss_pred CCCcEEEEEcCCCCCC
Q 039087 115 QGPVVAGIDLNHANLQ 130 (414)
Q Consensus 115 ~~~~l~~L~L~~n~l~ 130 (414)
+..+|...++.++.+.
T Consensus 183 rG~kVAsF~i~g~emi 198 (641)
T KOG3915|consen 183 RGAKVASFTIEGCELI 198 (641)
T ss_pred cCceeeEEEecCceEE
Confidence 3455666666666543
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.94 E-value=1.4 Score=24.86 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=5.8
Q ss_pred CCCeEecccccCc
Q 039087 333 TLMNLTVAFNFFS 345 (414)
Q Consensus 333 ~L~~L~L~~N~l~ 345 (414)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 3444444444443
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.16 E-value=1.5 Score=24.67 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=10.2
Q ss_pred CCCEEecccccCCCCCCc
Q 039087 190 NLVYLDLRFNSFSGPLPQ 207 (414)
Q Consensus 190 ~L~~L~Ls~N~i~~~~p~ 207 (414)
+|++|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4666666666666 4543
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=77.71 E-value=1.4 Score=44.17 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=41.8
Q ss_pred CCCCCEEEccCCCCCCC--CcccccCCCCCcEEEcccC--CCCCCCchhhh--CCCCCCeEecccccCcccch-------
Q 039087 283 FSEMQVFDVSFNSLMGH--LPDTISCMSDIEILNLAHN--QLSGELPDLVC--SLRTLMNLTVAFNFFSGFSQ------- 349 (414)
Q Consensus 283 l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~~~------- 349 (414)
.+.+..+.|++|++... +...-...++|..|+|++| .+.. ..++. ....|++|-+.+|.+.....
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 34555566666665421 1111123456777777777 3331 11121 22347777777777765422
Q ss_pred hhhhhcccCcEEEecCCCCCCC
Q 039087 350 ECARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 350 ~~~~~~~~L~~L~ls~N~l~~~ 371 (414)
.+.+..|+| +.|+++.+...
T Consensus 295 ~i~~~FPKL--~~LDG~ev~~~ 314 (585)
T KOG3763|consen 295 AIRELFPKL--LRLDGVEVQPE 314 (585)
T ss_pred HHHHhcchh--eeecCcccCcc
Confidence 122234544 45556555543
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=76.29 E-value=7.2 Score=38.58 Aligned_cols=84 Identities=23% Similarity=0.151 Sum_probs=43.6
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCcccc---CCCCCCCEEeCcCccCCCCCchhccCC---C
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETF---KDLTSLQELDLSNNQFSGPFPLVTLYI---P 189 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~ 189 (414)
.++++++|++.|.+....+..+..-. --+.++.++++...-..+ ..=..+++++|+-|.....+|..+..+ .
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 46678899999988766554443311 114455554442211110 011346777777777766666544322 2
Q ss_pred CCCEEecccccC
Q 039087 190 NLVYLDLRFNSF 201 (414)
Q Consensus 190 ~L~~L~Ls~N~i 201 (414)
-++.++.+...+
T Consensus 242 vl~~ld~s~tgi 253 (553)
T KOG4242|consen 242 VLFKLDRSTTGI 253 (553)
T ss_pred hhhccccccccc
Confidence 345555554444
No 91
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.52 E-value=0.87 Score=39.78 Aligned_cols=83 Identities=8% Similarity=0.037 Sum_probs=51.3
Q ss_pred CCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCC-Cccccc-CCCCCcEEEcccC-CCCCCCchhhhCCCCCCeE
Q 039087 261 KLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGH-LPDTIS-CMSDIEILNLAHN-QLSGELPDLVCSLRTLMNL 337 (414)
Q Consensus 261 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~-~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L 337 (414)
.++.++-++..|..+--+.+..++.++.|.+.+++--+. --+.++ -.++|+.|+|++| +|++.--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 577778787777755556667777777777776643211 001111 2467888888855 5665445566677777777
Q ss_pred eccccc
Q 039087 338 TVAFNF 343 (414)
Q Consensus 338 ~L~~N~ 343 (414)
.|.+=.
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 776543
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=71.92 E-value=3.2 Score=23.64 Aligned_cols=13 Identities=69% Similarity=0.966 Sum_probs=7.4
Q ss_pred CCCEEeCcCccCC
Q 039087 166 SLQELDLSNNQFS 178 (414)
Q Consensus 166 ~L~~L~Ls~N~l~ 178 (414)
+|++|||++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555566555554
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.60 E-value=2.8 Score=42.11 Aligned_cols=68 Identities=19% Similarity=0.108 Sum_probs=45.8
Q ss_pred CCCCCcEEEcccCCCCCC--CchhhhCCCCCCeEecccc--cCcccch-hhhhhcccCcEEEecCCCCCCCCCC
Q 039087 306 CMSDIEILNLAHNQLSGE--LPDLVCSLRTLMNLTVAFN--FFSGFSQ-ECARLLIRNVGFDFSANCIPGRDMQ 374 (414)
Q Consensus 306 ~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L~~N--~l~~~~~-~~~~~~~~L~~L~ls~N~l~~~~~~ 374 (414)
+.+.+..++|++|+|... +...-..-++|+.|+|++| .+..... .-+.. ..|++|-+.+|+|...-.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccchhh
Confidence 456788899999999732 2222345689999999999 4443221 11222 3588999999999876444
No 94
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=66.20 E-value=4.9 Score=39.18 Aligned_cols=8 Identities=50% Similarity=0.833 Sum_probs=3.8
Q ss_pred CCCCEEeC
Q 039087 165 TSLQELDL 172 (414)
Q Consensus 165 ~~L~~L~L 172 (414)
++|+.||+
T Consensus 220 TKLKRLdI 227 (641)
T KOG3915|consen 220 TKLKRLDI 227 (641)
T ss_pred HHhhccce
Confidence 34555544
No 95
>PHA00370 III attachment protein
Probab=51.46 E-value=27 Score=31.51 Aligned_cols=6 Identities=50% Similarity=0.429 Sum_probs=2.5
Q ss_pred HHHHhC
Q 039087 80 AWKSAI 85 (414)
Q Consensus 80 ~~~~~~ 85 (414)
+.|.++
T Consensus 154 a~kdal 159 (297)
T PHA00370 154 ANKDAL 159 (297)
T ss_pred hhhhhh
Confidence 334444
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=50.24 E-value=11 Score=45.24 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=28.2
Q ss_pred EcccCCCCCCCchhhhCCCCCCeEecccccCccc
Q 039087 314 NLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGF 347 (414)
Q Consensus 314 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 347 (414)
||++|+|+...+..|..+++|++|+|++|.+.-.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 6889999955566788899999999999988754
No 97
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=41.87 E-value=29 Score=34.52 Aligned_cols=15 Identities=20% Similarity=0.011 Sum_probs=10.1
Q ss_pred CCCeEecccccCccc
Q 039087 333 TLMNLTVAFNFFSGF 347 (414)
Q Consensus 333 ~L~~L~L~~N~l~~~ 347 (414)
.+++|++..|.+.+.
T Consensus 355 R~q~l~~rdnnldge 369 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGE 369 (553)
T ss_pred eeeEeeccccccccc
Confidence 377777777776654
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=35.03 E-value=26 Score=42.47 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=27.4
Q ss_pred ECCCCcCCccCccccCCCCCCCEEeCcCccCC
Q 039087 147 HLNTNRFSGTVPETFKDLTSLQELDLSNNQFS 178 (414)
Q Consensus 147 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 178 (414)
||++|+|+...+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899999666667888999999999999876
No 99
>PF05887 Trypan_PARP: Procyclic acidic repetitive protein (PARP); InterPro: IPR008882 This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of T. brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated [].; GO: 0016020 membrane; PDB: 2X34_B 2X32_B.
Probab=34.79 E-value=13 Score=29.97 Aligned_cols=9 Identities=33% Similarity=0.257 Sum_probs=0.0
Q ss_pred CCchhHHHH
Q 039087 1 MGKSWLLAL 9 (414)
Q Consensus 1 ~~~~~~~~~ 9 (414)
|.-|-++.+
T Consensus 1 m~pr~l~~L 9 (143)
T PF05887_consen 1 MTPRHLCLL 9 (143)
T ss_dssp ---------
T ss_pred Ccccccccc
Confidence 333433333
No 100
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=32.38 E-value=34 Score=32.35 Aligned_cols=25 Identities=48% Similarity=0.716 Sum_probs=0.0
Q ss_pred cccccccc--cCccCCCCCcccCCCCC
Q 039087 29 GGGVAIGI--GGGGGGGGGVWIGGGIN 53 (414)
Q Consensus 29 ~~~~~~~~--g~~gg~ggg~~~~~~~~ 53 (414)
++.++.|+ ||.|||.||+++|||.+
T Consensus 357 g~Rgg~Gg~~gGrGgGRGggG~GGGgg 383 (465)
T KOG3973|consen 357 GSRGGSGGNWGGRGGGRGGGGRGGGGG 383 (465)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
No 101
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=31.05 E-value=35 Score=18.74 Aligned_cols=12 Identities=50% Similarity=0.492 Sum_probs=8.4
Q ss_pred CCCCEEeccccc
Q 039087 189 PNLVYLDLRFNS 200 (414)
Q Consensus 189 ~~L~~L~Ls~N~ 200 (414)
++|++|+|+++.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 567777777764
No 102
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=29.36 E-value=49 Score=24.24 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=11.9
Q ss_pred CCchhHHHHHHHHHHhhhhc
Q 039087 1 MGKSWLLALAAFVIFQLIIP 20 (414)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (414)
|+++.+++-++.|-|+++.+
T Consensus 1 MaRRlwiLslLAVtLtVALA 20 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALA 20 (100)
T ss_pred CchhhHHHHHHHHHHHHHhh
Confidence 77776665554666664443
No 103
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=26.61 E-value=64 Score=30.95 Aligned_cols=6 Identities=33% Similarity=0.545 Sum_probs=2.4
Q ss_pred HHHHHH
Q 039087 76 TALQAW 81 (414)
Q Consensus 76 ~~L~~~ 81 (414)
++|..|
T Consensus 50 eal~~f 55 (494)
T KOG1456|consen 50 EALSNF 55 (494)
T ss_pred HHHhcC
Confidence 344433
No 104
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=25.92 E-value=36 Score=32.27 Aligned_cols=22 Identities=14% Similarity=0.004 Sum_probs=11.8
Q ss_pred HHHHHHHhhhhccccccccccc
Q 039087 9 LAAFVIFQLIIPTEAASFGVGG 30 (414)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~ 30 (414)
-|+|+++.|...+++++.+.+.
T Consensus 6 clalvl~a~~l~~~~~a~~~ak 27 (434)
T KOG3555|consen 6 CLALVLAAWCLIGSAEARNDAK 27 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh
Confidence 3455666666655555554443
No 105
>PHA03343 US22 family homolog; Provisional
Probab=25.57 E-value=57 Score=32.12 Aligned_cols=17 Identities=53% Similarity=0.869 Sum_probs=7.0
Q ss_pred ccCCCCCcccCCCCCCC
Q 039087 39 GGGGGGGVWIGGGINGG 55 (414)
Q Consensus 39 ~gg~ggg~~~~~~~~~~ 55 (414)
|||..||-.++.|.++.
T Consensus 169 g~~~~~~~d~~~~~~~~ 185 (578)
T PHA03343 169 GGGEDGGEDGGKGIGGA 185 (578)
T ss_pred CCCccCccccccccccc
Confidence 33333444444444443
No 106
>PF00740 Parvo_coat: Parvovirus coat protein VP2 This family is a subset of the SCOP family; InterPro: IPR001403 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. The Parvovirus coat protein VP1 together with VP2 forms a capsomer. Both of these proteins are formed from the same transcript using alternative translation start codons. As a result, VP1 and VP2 differ only in the N terminus region. VP2 is involved in packaging the viral DNA []. The mature viron contains three capsid proteins VP1, VP2, and VP3 and a noncapsid protein NS1. VP3 may arise from a third start codon with a favorable translation initiation context which is present at position 3067 in the ChPV genome and which has been described in the goose and Muscovy duck parvoviruses [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 1C8G_A 1C8F_A 1C8E_A 1FPV_A 3KIC_L 3KIE_Q 3UX1_A 2G8G_A 1VU0_U 3SHM_L ....
Probab=21.36 E-value=30 Score=35.48 Aligned_cols=17 Identities=59% Similarity=0.995 Sum_probs=5.4
Q ss_pred cCccCCCCCcccCCCCC
Q 039087 37 GGGGGGGGGVWIGGGIN 53 (414)
Q Consensus 37 g~~gg~ggg~~~~~~~~ 53 (414)
|||||||.|.+.|++.+
T Consensus 3 gg~GggGvg~stG~W~~ 19 (529)
T PF00740_consen 3 GGGGGGGVGNSTGGWHG 19 (529)
T ss_dssp -EETBCETTS-SS-B--
T ss_pred CCCCCCCCCccccccCC
Confidence 33444444444555443
No 107
>PRK02710 plastocyanin; Provisional
Probab=20.70 E-value=91 Score=24.75 Aligned_cols=16 Identities=31% Similarity=0.185 Sum_probs=9.9
Q ss_pred CCchhHHHHHHHHHHh
Q 039087 1 MGKSWLLALAAFVIFQ 16 (414)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (414)
|.|+|.+++.+++++.
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (119)
T PRK02710 1 MAKRLRSIAAALVAVV 16 (119)
T ss_pred CchhHHHHHHHHHHHH
Confidence 7777777765444443
Done!