Query 039087
Match_columns 414
No_of_seqs 594 out of 3722
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 10:03:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 3.9E-43 1.3E-47 333.4 18.1 297 69-372 2-308 (313)
2 4eco_A Uncharacterized protein 100.0 1.8E-38 6E-43 329.3 14.4 298 69-374 26-475 (636)
3 3rgz_A Protein brassinosteroid 100.0 3.2E-38 1.1E-42 334.3 15.5 293 68-371 7-358 (768)
4 4ecn_A Leucine-rich repeat pro 100.0 9.3E-36 3.2E-40 315.6 22.5 291 68-374 264-715 (876)
5 3rgz_A Protein brassinosteroid 100.0 1.9E-35 6.5E-40 313.0 21.2 276 116-392 393-743 (768)
6 4fcg_A Uncharacterized protein 100.0 1.3E-35 4.5E-40 283.3 12.8 284 69-372 23-317 (328)
7 3v47_A TOLL-like receptor 5B a 100.0 8.7E-34 3E-38 282.4 23.5 276 116-391 29-410 (455)
8 3v47_A TOLL-like receptor 5B a 100.0 9.3E-33 3.2E-37 275.0 19.9 257 116-373 78-412 (455)
9 2id5_A Lingo-1, leucine rich r 100.0 2E-31 6.9E-36 267.1 25.9 269 104-373 13-313 (477)
10 1xku_A Decorin; proteoglycan, 100.0 2E-31 6.7E-36 254.5 23.2 265 99-371 28-308 (330)
11 1ogq_A PGIP-2, polygalacturona 100.0 7.3E-33 2.5E-37 262.6 12.8 232 141-374 50-286 (313)
12 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-31 4.5E-36 256.0 21.2 261 101-370 32-308 (332)
13 2id5_A Lingo-1, leucine rich r 100.0 2.4E-31 8.1E-36 266.6 18.6 255 116-371 55-335 (477)
14 3t6q_A CD180 antigen; protein- 100.0 1.3E-30 4.3E-35 268.9 23.8 264 104-369 14-338 (606)
15 3oja_B Anopheles plasmodium-re 100.0 1.5E-30 5.2E-35 268.0 22.1 270 117-391 51-360 (597)
16 3o6n_A APL1; leucine-rich repe 100.0 4.4E-30 1.5E-34 250.8 22.8 266 117-390 45-353 (390)
17 3t6q_A CD180 antigen; protein- 100.0 2.4E-30 8.2E-35 266.8 21.6 271 118-390 255-561 (606)
18 1xku_A Decorin; proteoglycan, 100.0 1.4E-29 4.9E-34 241.5 25.2 247 118-374 32-281 (330)
19 4eco_A Uncharacterized protein 100.0 3.2E-31 1.1E-35 274.8 14.6 251 116-372 205-504 (636)
20 2z80_A TOLL-like receptor 2, v 100.0 8.2E-31 2.8E-35 252.6 16.4 271 99-372 27-317 (353)
21 3zyi_A Leucine-rich repeat-con 100.0 4.2E-30 1.4E-34 255.9 21.3 227 116-346 74-304 (452)
22 4fcg_A Uncharacterized protein 100.0 6E-30 2.1E-34 244.1 20.1 258 87-372 26-293 (328)
23 2z7x_B TOLL-like receptor 1, v 100.0 5.6E-30 1.9E-34 259.3 20.2 106 117-225 21-128 (520)
24 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-29 6.3E-34 260.8 24.5 276 116-391 51-582 (635)
25 2z66_A Variable lymphocyte rec 100.0 4.4E-30 1.5E-34 242.5 17.9 229 141-371 28-263 (306)
26 3j0a_A TOLL-like receptor 5; m 100.0 8.4E-30 2.9E-34 272.4 22.4 113 260-372 266-378 (844)
27 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-29 4E-34 256.9 22.2 268 116-390 44-482 (520)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-29 5E-34 258.8 22.2 108 116-226 51-160 (562)
29 2ft3_A Biglycan; proteoglycan, 100.0 2E-29 6.8E-34 240.8 21.5 246 118-374 34-282 (332)
30 2z81_A CD282 antigen, TOLL-lik 100.0 7.1E-30 2.4E-34 260.2 18.8 271 101-373 3-404 (549)
31 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-29 8.9E-34 259.0 23.0 132 259-390 423-559 (606)
32 4ecn_A Leucine-rich repeat pro 100.0 3.3E-29 1.1E-33 265.6 23.4 232 136-375 568-825 (876)
33 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.9E-29 1.4E-33 255.6 23.2 268 116-390 75-511 (562)
34 3zyj_A Leucine-rich repeat-con 100.0 3.6E-29 1.2E-33 248.3 21.8 225 117-345 64-292 (440)
35 3oja_B Anopheles plasmodium-re 100.0 3.3E-29 1.1E-33 258.0 21.5 247 117-371 75-360 (597)
36 3vq2_A TLR4, TOLL-like recepto 100.0 3.7E-29 1.3E-33 257.9 19.7 112 116-227 55-168 (606)
37 3o6n_A APL1; leucine-rich repe 100.0 1.5E-28 5.3E-33 239.8 22.0 244 117-371 93-354 (390)
38 1ziw_A TOLL-like receptor 3; i 100.0 2.4E-28 8.2E-33 255.3 24.8 248 116-363 24-303 (680)
39 2z81_A CD282 antigen, TOLL-lik 100.0 9.8E-29 3.3E-33 251.7 19.6 109 238-348 313-426 (549)
40 3j0a_A TOLL-like receptor 5; m 100.0 6.6E-28 2.3E-32 257.8 25.4 253 116-374 72-399 (844)
41 3zyi_A Leucine-rich repeat-con 100.0 3E-28 1E-32 242.5 21.3 244 122-371 59-305 (452)
42 3zyj_A Leucine-rich repeat-con 100.0 4.8E-28 1.6E-32 240.2 21.7 244 121-370 47-293 (440)
43 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-27 4E-32 250.1 25.6 255 118-372 249-576 (680)
44 2z66_A Variable lymphocyte rec 100.0 6.8E-29 2.3E-33 234.3 14.1 267 101-369 6-287 (306)
45 2o6q_A Variable lymphocyte rec 100.0 9.3E-28 3.2E-32 222.6 20.4 219 99-347 2-220 (270)
46 1wwl_A Monocyte differentiatio 100.0 1.1E-30 3.9E-35 247.4 0.7 246 116-371 42-311 (312)
47 1ozn_A Reticulon 4 receptor; N 100.0 1.1E-27 3.6E-32 223.8 19.8 224 120-347 14-240 (285)
48 3o53_A Protein LRIM1, AGAP0063 100.0 2.9E-29 9.9E-34 238.2 8.1 242 117-371 34-278 (317)
49 4fmz_A Internalin; leucine ric 100.0 1.8E-26 6.3E-31 221.4 27.2 241 116-373 65-328 (347)
50 1ozn_A Reticulon 4 receptor; N 100.0 2.9E-27 9.8E-32 220.9 20.7 225 143-371 13-240 (285)
51 3o53_A Protein LRIM1, AGAP0063 100.0 1.6E-28 5.5E-33 233.1 11.5 240 117-369 10-250 (317)
52 4fmz_A Internalin; leucine ric 100.0 1.6E-26 5.5E-31 221.7 24.6 239 116-370 87-347 (347)
53 4g8a_A TOLL-like receptor 4; l 100.0 6.4E-27 2.2E-31 241.7 23.1 113 259-371 468-582 (635)
54 2z80_A TOLL-like receptor 2, v 99.9 7E-27 2.4E-31 225.1 19.4 264 122-391 36-316 (353)
55 1o6v_A Internalin A; bacterial 99.9 4.9E-26 1.7E-30 227.4 25.0 237 116-371 67-346 (466)
56 3oja_A Leucine-rich immune mol 99.9 8.5E-28 2.9E-32 241.3 11.8 236 116-364 33-270 (487)
57 2z63_A TOLL-like receptor 4, v 99.9 1.4E-26 4.7E-31 236.7 19.8 251 117-372 52-412 (570)
58 3oja_A Leucine-rich immune mol 99.9 2.5E-27 8.5E-32 237.9 13.3 219 138-369 31-250 (487)
59 1o6v_A Internalin A; bacterial 99.9 1.3E-25 4.3E-30 224.4 25.0 248 116-384 89-378 (466)
60 2z63_A TOLL-like receptor 4, v 99.9 6.2E-27 2.1E-31 239.3 15.8 249 117-372 282-534 (570)
61 1wwl_A Monocyte differentiatio 99.9 9.4E-28 3.2E-32 227.3 8.2 223 119-347 65-311 (312)
62 3bz5_A Internalin-J, INLJ; leu 99.9 3E-25 1E-29 220.9 23.5 228 116-371 41-269 (457)
63 3bz5_A Internalin-J, INLJ; leu 99.9 1.5E-24 5E-29 215.9 24.5 183 116-321 63-246 (457)
64 1p9a_G Platelet glycoprotein I 99.9 7.3E-25 2.5E-29 205.2 20.7 198 118-347 11-210 (290)
65 2z62_A TOLL-like receptor 4, v 99.9 5.3E-25 1.8E-29 204.5 19.1 203 142-346 29-238 (276)
66 2z62_A TOLL-like receptor 4, v 99.9 2.1E-25 7.1E-30 207.3 16.1 222 145-371 11-239 (276)
67 3g06_A SSPH2 (leucine-rich rep 99.9 5.2E-25 1.8E-29 226.1 18.1 217 119-372 42-277 (622)
68 1jl5_A Outer protein YOPM; leu 99.9 1.3E-25 4.3E-30 223.4 12.2 233 117-374 11-275 (454)
69 3goz_A Leucine-rich repeat-con 99.9 2.4E-26 8.3E-31 222.1 6.1 251 121-371 2-299 (362)
70 1jl5_A Outer protein YOPM; leu 99.9 5.1E-24 1.8E-28 211.8 22.8 226 117-371 131-372 (454)
71 3g06_A SSPH2 (leucine-rich rep 99.9 5.2E-24 1.8E-28 218.7 23.4 221 116-372 80-300 (622)
72 1p9a_G Platelet glycoprotein I 99.9 9.7E-24 3.3E-28 197.6 22.8 206 136-371 5-210 (290)
73 3m19_A Variable lymphocyte rec 99.9 2E-24 6.9E-29 197.8 17.0 192 100-347 3-194 (251)
74 2ca6_A RAN GTPase-activating p 99.9 7.2E-26 2.4E-30 220.7 6.5 236 136-372 27-319 (386)
75 2o6q_A Variable lymphocyte rec 99.9 1.9E-23 6.6E-28 193.4 21.4 205 95-322 6-219 (270)
76 4glp_A Monocyte differentiatio 99.9 7.4E-25 2.5E-29 207.1 10.8 223 142-370 65-308 (310)
77 1h6u_A Internalin H; cell adhe 99.9 1.3E-23 4.5E-28 198.4 17.4 195 139-349 39-234 (308)
78 3rfs_A Internalin B, repeat mo 99.9 6.3E-24 2.1E-28 197.0 14.9 201 137-371 37-237 (272)
79 2ast_B S-phase kinase-associat 99.9 8.8E-26 3E-30 215.5 2.3 258 103-374 38-311 (336)
80 4glp_A Monocyte differentiatio 99.9 1.2E-24 4.2E-29 205.6 8.5 224 117-346 64-308 (310)
81 2ca6_A RAN GTPase-activating p 99.9 2.5E-25 8.6E-30 216.8 3.6 250 117-367 32-341 (386)
82 3rfs_A Internalin B, repeat mo 99.9 2.5E-23 8.6E-28 192.9 15.9 206 116-355 40-245 (272)
83 2xwt_C Thyrotropin receptor; s 99.9 2.4E-23 8.2E-28 189.2 13.3 195 142-366 32-236 (239)
84 3m19_A Variable lymphocyte rec 99.9 1.9E-22 6.4E-27 184.7 19.1 180 142-371 15-194 (251)
85 1z7x_W Ribonuclease inhibitor; 99.9 2.1E-25 7.4E-30 222.0 -1.0 85 118-202 86-183 (461)
86 1z7x_W Ribonuclease inhibitor; 99.9 2.4E-25 8.1E-30 221.7 -0.7 255 116-371 112-413 (461)
87 3cvr_A Invasion plasmid antige 99.9 1.5E-22 5.3E-27 205.4 18.4 197 103-355 49-253 (571)
88 1h6u_A Internalin H; cell adhe 99.9 4.5E-22 1.5E-26 187.8 20.1 194 116-326 40-234 (308)
89 2xwt_C Thyrotropin receptor; s 99.9 1.2E-22 4E-27 184.6 14.7 199 116-343 30-237 (239)
90 3goz_A Leucine-rich repeat-con 99.9 5E-24 1.7E-28 205.9 5.7 228 145-372 2-269 (362)
91 3cvr_A Invasion plasmid antige 99.9 1.2E-22 4.2E-27 206.2 12.1 168 116-331 79-253 (571)
92 4ay9_X Follicle-stimulating ho 99.9 1.4E-22 4.8E-27 194.8 11.8 235 101-343 8-257 (350)
93 2o6s_A Variable lymphocyte rec 99.9 1.9E-21 6.5E-26 172.7 14.1 184 101-332 6-189 (208)
94 2ast_B S-phase kinase-associat 99.9 9.2E-23 3.2E-27 194.5 4.8 225 141-371 47-286 (336)
95 4ay9_X Follicle-stimulating ho 99.9 5.8E-21 2E-25 183.5 15.1 236 121-366 13-256 (350)
96 1h6t_A Internalin B; cell adhe 99.8 5.4E-20 1.8E-24 172.1 17.2 176 137-349 42-217 (291)
97 2o6s_A Variable lymphocyte rec 99.8 7.4E-20 2.5E-24 162.4 15.9 179 144-355 10-188 (208)
98 3e6j_A Variable lymphocyte rec 99.8 1.3E-19 4.6E-24 163.4 17.3 92 93-202 10-101 (229)
99 1dce_A Protein (RAB geranylger 99.8 4.7E-23 1.6E-27 209.9 -6.2 203 139-363 347-567 (567)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 4.2E-20 1.4E-24 165.7 13.6 153 192-369 14-166 (220)
101 1h6t_A Internalin B; cell adhe 99.8 7.1E-20 2.4E-24 171.3 15.4 193 144-375 27-219 (291)
102 2v9t_B SLIT homolog 2 protein 99.8 8.6E-20 2.9E-24 163.6 13.5 133 236-369 33-165 (220)
103 1m9s_A Internalin B; cell inva 99.8 6.8E-20 2.3E-24 187.8 14.2 189 122-349 26-214 (605)
104 2xot_A Amphoterin-induced prot 99.8 1.2E-19 4.2E-24 175.0 14.0 173 168-345 21-202 (361)
105 3e6j_A Variable lymphocyte rec 99.8 3.2E-19 1.1E-23 160.9 15.4 152 191-346 21-173 (229)
106 2xot_A Amphoterin-induced prot 99.8 2.5E-19 8.5E-24 172.8 15.1 175 121-322 22-203 (361)
107 4b8c_D Glucose-repressible alc 99.8 5.3E-21 1.8E-25 200.5 2.1 259 67-369 126-404 (727)
108 2v9t_B SLIT homolog 2 protein 99.8 7.6E-19 2.6E-23 157.4 15.8 150 122-321 16-165 (220)
109 1m9s_A Internalin B; cell inva 99.8 2.9E-19 9.8E-24 183.2 14.7 196 141-375 21-216 (605)
110 3ogk_B Coronatine-insensitive 99.8 5.4E-21 1.9E-25 196.2 0.5 141 235-375 378-532 (592)
111 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-18 3.8E-23 156.4 15.5 85 262-346 83-167 (220)
112 4ezg_A Putative uncharacterize 99.8 9.8E-19 3.4E-23 153.9 11.9 80 261-344 113-193 (197)
113 4ezg_A Putative uncharacterize 99.8 2.3E-18 7.9E-23 151.5 13.2 154 186-370 41-195 (197)
114 1xeu_A Internalin C; cellular 99.8 4.4E-19 1.5E-23 163.4 8.2 166 118-321 20-185 (263)
115 1dce_A Protein (RAB geranylger 99.8 4.3E-21 1.5E-25 195.5 -6.0 190 162-374 346-551 (567)
116 3ogk_B Coronatine-insensitive 99.8 3.5E-20 1.2E-24 190.2 -0.3 254 117-371 164-503 (592)
117 1xeu_A Internalin C; cellular 99.8 8E-19 2.7E-23 161.7 8.8 173 140-350 18-190 (263)
118 1w8a_A SLIT protein; signaling 99.7 6.1E-18 2.1E-22 148.2 11.1 134 214-349 10-143 (192)
119 2wfh_A SLIT homolog 2 protein 99.7 2E-17 6.8E-22 145.1 12.0 128 238-370 13-140 (193)
120 2ell_A Acidic leucine-rich nuc 99.7 3.2E-17 1.1E-21 140.3 11.5 135 235-373 24-164 (168)
121 1w8a_A SLIT protein; signaling 99.7 4.9E-17 1.7E-21 142.4 12.2 131 237-371 10-141 (192)
122 4b8c_D Glucose-repressible alc 99.7 3.9E-18 1.3E-22 178.7 6.2 189 122-321 206-404 (727)
123 2o6r_A Variable lymphocyte rec 99.7 9.7E-17 3.3E-21 138.5 13.5 129 238-370 10-138 (177)
124 2je0_A Acidic leucine-rich nuc 99.7 2.2E-16 7.5E-21 132.2 9.5 128 235-365 17-149 (149)
125 2wfh_A SLIT homolog 2 protein 99.7 7.9E-16 2.7E-20 134.8 13.4 128 216-347 14-141 (193)
126 2p1m_B Transport inhibitor res 99.7 6.4E-18 2.2E-22 173.3 -0.1 135 235-370 372-520 (594)
127 3sb4_A Hypothetical leucine ri 99.6 3.4E-16 1.2E-20 148.8 10.6 194 164-362 100-327 (329)
128 2ell_A Acidic leucine-rich nuc 99.6 9.8E-16 3.4E-20 130.9 12.1 62 260-321 95-160 (168)
129 1a9n_A U2A', U2A'; complex (nu 99.6 3.9E-16 1.3E-20 134.6 8.8 136 230-370 14-154 (176)
130 2p1m_B Transport inhibitor res 99.6 8E-17 2.7E-21 165.1 5.3 112 259-371 371-496 (594)
131 2o6r_A Variable lymphocyte rec 99.6 2.5E-15 8.6E-20 129.5 13.9 132 215-349 10-141 (177)
132 3sb4_A Hypothetical leucine ri 99.6 5E-16 1.7E-20 147.7 7.0 218 117-339 49-328 (329)
133 2je0_A Acidic leucine-rich nuc 99.6 6.6E-15 2.3E-19 123.1 10.5 113 259-373 16-130 (149)
134 3g39_A Variable lymphocyte rec 99.6 1.2E-14 4.2E-19 124.5 11.3 110 236-349 10-119 (170)
135 3g39_A Variable lymphocyte rec 99.6 2.7E-14 9.1E-19 122.4 11.9 109 261-372 10-118 (170)
136 2r9u_A Variable lymphocyte rec 99.5 2.5E-14 8.5E-19 123.0 11.4 109 237-349 14-122 (174)
137 4fdw_A Leucine rich hypothetic 99.5 9.8E-14 3.3E-18 135.3 16.8 241 118-372 114-361 (401)
138 1a9n_A U2A', U2A'; complex (nu 99.5 5E-15 1.7E-19 127.6 6.8 135 185-347 15-155 (176)
139 4fdw_A Leucine rich hypothetic 99.5 1.9E-13 6.4E-18 133.2 18.2 239 118-368 136-382 (401)
140 2r9u_A Variable lymphocyte rec 99.5 5.9E-14 2E-18 120.7 11.8 108 262-372 14-121 (174)
141 1ds9_A Outer arm dynein; leuci 99.5 1.2E-16 4.2E-21 140.5 -5.7 19 184-202 43-61 (198)
142 1ds9_A Outer arm dynein; leuci 99.5 4.1E-16 1.4E-20 137.1 -2.9 128 235-371 48-187 (198)
143 3un9_A NLR family member X1; l 99.4 2.9E-14 9.8E-19 137.7 -0.3 163 188-350 71-257 (372)
144 2ifg_A High affinity nerve gro 99.4 1.1E-12 3.8E-17 125.3 10.1 106 238-347 11-118 (347)
145 3un9_A NLR family member X1; l 99.4 3.2E-14 1.1E-18 137.3 -1.5 182 164-346 71-284 (372)
146 2ifg_A High affinity nerve gro 99.3 3.3E-12 1.1E-16 122.0 11.3 103 265-370 13-117 (347)
147 2ra8_A Uncharacterized protein 99.1 1.1E-10 3.8E-15 111.8 7.3 133 234-367 192-341 (362)
148 4fs7_A Uncharacterized protein 99.0 3E-08 1E-12 96.2 18.6 236 117-366 71-353 (394)
149 4gt6_A Cell surface protein; l 98.9 2.5E-08 8.4E-13 96.8 17.2 107 258-368 263-369 (394)
150 4fs7_A Uncharacterized protein 98.9 1.6E-08 5.6E-13 98.1 14.9 220 134-366 155-376 (394)
151 2ra8_A Uncharacterized protein 98.9 4.2E-10 1.4E-14 107.8 2.0 83 259-343 251-341 (362)
152 1io0_A Tropomodulin; LRR prote 98.7 6.1E-09 2.1E-13 90.0 3.8 109 260-368 36-163 (185)
153 4gt6_A Cell surface protein; l 98.7 2.4E-07 8.3E-12 89.7 14.3 125 236-368 266-390 (394)
154 4h09_A Hypothetical leucine ri 98.5 1.9E-06 6.5E-11 82.8 16.2 77 118-199 47-123 (379)
155 1io0_A Tropomodulin; LRR prote 98.5 2.2E-08 7.6E-13 86.5 1.9 112 235-347 36-166 (185)
156 3rw6_A Nuclear RNA export fact 98.4 2.2E-08 7.5E-13 91.3 -0.1 79 282-362 168-257 (267)
157 3rw6_A Nuclear RNA export fact 98.3 3.7E-07 1.3E-11 83.1 5.3 78 259-338 169-257 (267)
158 4h09_A Hypothetical leucine ri 98.3 1.9E-05 6.5E-10 75.7 16.4 226 136-371 41-324 (379)
159 3e4g_A ATP synthase subunit S, 98.1 4.4E-06 1.5E-10 70.8 5.6 87 260-346 61-154 (176)
160 3e4g_A ATP synthase subunit S, 98.0 1.2E-06 4E-11 74.4 1.6 84 117-200 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 4.7E-06 1.6E-10 72.0 3.6 89 279-367 65-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 2.4E-05 8.3E-10 67.5 2.6 111 235-346 41-171 (197)
163 3rfe_A Platelet glycoprotein I 97.1 0.00093 3.2E-08 53.6 6.8 37 166-202 32-68 (130)
164 3rfe_A Platelet glycoprotein I 97.1 0.00069 2.4E-08 54.4 5.5 58 287-346 11-69 (130)
165 4dpv_Z Protein (parvovirus coa 78.5 0.64 2.2E-05 44.5 1.2 9 42-50 36-44 (584)
166 1k3v_A Capsid protein VP2; ico 69.1 1.6 5.4E-05 43.0 1.4 6 48-53 43-48 (579)
167 2lz0_A Uncharacterized protein 50.8 22 0.00076 26.2 4.7 45 153-198 8-52 (100)
168 2lz0_A Uncharacterized protein 46.4 41 0.0014 24.7 5.6 47 128-175 7-53 (100)
169 1g3p_A G3P, minor coat protein 34.4 8.8 0.0003 30.9 0.1 7 146-152 134-140 (217)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.9e-43 Score=333.35 Aligned_cols=297 Identities=27% Similarity=0.397 Sum_probs=268.1
Q ss_pred CChHHHHHHHHHHHHhCCCCCcccCCCCC-CCCCCC--CCceeeCCCCCCCCcEEEEEcCCCCCCC--ccccccCCCCCC
Q 039087 69 SSLKTAYTALQAWKSAITDDPLRILDTWV-GDNVCS--YKGIFCSDLGAQGPVVAGIDLNHANLQG--NLVKELSLLTDV 143 (414)
Q Consensus 69 ~~~~~~~~~L~~~~~~~~~~~~~~l~~w~-~~~~c~--~~gv~c~~~~~~~~~l~~L~L~~n~l~~--~~~~~l~~l~~L 143 (414)
.|.+.|..||++||+++. +|. .+.+|. +.++|. |.||.|+... ...+|++|+|++|++.+ .+|..|..+++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~-~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L 78 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSS-SCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCC-CCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence 357889999999999995 565 789997 468898 9999997521 12689999999999998 899999999999
Q ss_pred CEEECCC-CcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccc-cccccccc
Q 039087 144 NLLHLNT-NRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKK-LDAIFVNN 221 (414)
Q Consensus 144 ~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~l~~ 221 (414)
++|+|++ |.+++.+|..|.++++|++|+|++|++++.+|..|..+++|++|++++|.+++.+|..+.... |++|++++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence 9999995 999999999999999999999999999999999999999999999999999989998888765 99999999
Q ss_pred cccccccCcccCCC--CCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCC
Q 039087 222 NQFSGELPQNLGNS--PASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGH 299 (414)
Q Consensus 222 n~l~~~~~~~~~~~--~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 299 (414)
|.+++.+|..+... .|++|++++|++++.+|..+... + |++|++++|++++..|..|..+++|++|++++|.+++.
T Consensus 159 N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred CcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 99998899888763 69999999999998999988875 4 99999999999989999999999999999999999866
Q ss_pred CcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCC-CCCCC
Q 039087 300 LPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANC-IPGRD 372 (414)
Q Consensus 300 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~-l~~~~ 372 (414)
++. +..+++|++|+|++|+|++.+|..+..+++|++|+|++|++++.+|.. ..+++|+.+++++|+ +.+.|
T Consensus 237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 665 888999999999999999999999999999999999999999888876 677889999999998 66654
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-38 Score=329.31 Aligned_cols=298 Identities=18% Similarity=0.230 Sum_probs=224.8
Q ss_pred CChHHHHHHHHHHHHhCCCCCcccC-------CCCC-CCCCCCC---CceeeCCCCCCCCcEEEEEcCCCCCCCcccccc
Q 039087 69 SSLKTAYTALQAWKSAITDDPLRIL-------DTWV-GDNVCSY---KGIFCSDLGAQGPVVAGIDLNHANLQGNLVKEL 137 (414)
Q Consensus 69 ~~~~~~~~~L~~~~~~~~~~~~~~l-------~~w~-~~~~c~~---~gv~c~~~~~~~~~l~~L~L~~n~l~~~~~~~l 137 (414)
+....|+.||.++++++.++.|... ..|+ ..++|.| .||.|+. ..+|+.|+|+++++.|.+|+.+
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~----~~~V~~L~L~~~~l~g~lp~~l 101 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS----NGRVTGLSLEGFGASGRVPDAI 101 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT----TCCEEEEECTTSCCEEEECGGG
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC----CCCEEEEEecCcccCCcCChHH
Confidence 3467899999999999876666543 3897 5689999 9999986 3689999999999999999999
Q ss_pred CCCCCCCEEECCCCcC----------------------------------------------------------------
Q 039087 138 SLLTDVNLLHLNTNRF---------------------------------------------------------------- 153 (414)
Q Consensus 138 ~~l~~L~~L~Ls~n~l---------------------------------------------------------------- 153 (414)
+.+++|++|+|++|.+
T Consensus 102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 181 (636)
T 4eco_A 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181 (636)
T ss_dssp GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccccc
Confidence 9999999999998843
Q ss_pred --------------CccCccccCCCCCCCEEeCcCccCCCC-----------------Cchhcc--CCCCCCEEeccccc
Q 039087 154 --------------SGTVPETFKDLTSLQELDLSNNQFSGP-----------------FPLVTL--YIPNLVYLDLRFNS 200 (414)
Q Consensus 154 --------------~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----------------~p~~~~--~l~~L~~L~Ls~N~ 200 (414)
++ +|..|.++++|++|+|++|++++. +|..+. ++++|++|+|++|.
T Consensus 182 ~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred chhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence 34 777888899999999999999875 888888 89999999999999
Q ss_pred CCCCCCchhcccc-cccccccccc-ccc-ccCcccCC-------CCCCEEEcccCcCCCCCch--hhhhcccCCcEEEcc
Q 039087 201 FSGPLPQDLFNKK-LDAIFVNNNQ-FSG-ELPQNLGN-------SPASVINLANNRLSGSIPA--SFGITNSKLKEILFL 268 (414)
Q Consensus 201 i~~~~p~~~~~~~-L~~L~l~~n~-l~~-~~~~~~~~-------~~L~~L~ls~N~l~~~~p~--~~~~~~~~L~~L~Ls 268 (414)
+.+.+|..+.... |++|++++|+ +++ .+|..++. .+|++|++++|+++ .+|. .+..+ ++|++|+++
T Consensus 261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l-~~L~~L~L~ 338 (636)
T 4eco_A 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM-KKLGMLECL 338 (636)
T ss_dssp TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC-TTCCEEECC
T ss_pred CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC-CCCCEEeCc
Confidence 8888888887765 8888888887 877 67766654 56777777777777 7776 55553 667777777
Q ss_pred CCcCcccCc----------------------cccCCCCC-CCEEEccCCCCCCCCcccccCCC--CCcEEEcccCCCCCC
Q 039087 269 NNQLTGCIP----------------------EGVGLFSE-MQVFDVSFNSLMGHLPDTISCMS--DIEILNLAHNQLSGE 323 (414)
Q Consensus 269 ~N~l~~~~~----------------------~~~~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~ 323 (414)
+|++++.+| ..+..+++ |++|++++|.++ .+|..+..+. +|++|++++|++++.
T Consensus 339 ~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 339 YNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp SCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred CCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCc
Confidence 776665555 33444455 666666666665 5555554433 566666666666666
Q ss_pred Cchhhh-------CCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCCCC
Q 039087 324 LPDLVC-------SLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDMQ 374 (414)
Q Consensus 324 ~p~~l~-------~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~ 374 (414)
+|..+. .+++|++|+|++|.++.+++..+..+++|++|++++|+|+.+|..
T Consensus 418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~ 475 (636)
T 4eco_A 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475 (636)
T ss_dssp TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred chhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence 666555 566777777777777766666666677788888888888766544
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.2e-38 Score=334.27 Aligned_cols=293 Identities=27% Similarity=0.386 Sum_probs=192.8
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcccCCCCC-CCCCCCCCceeeCCCCCCCCcEEEEEcCCCCCCCc---cc---------
Q 039087 68 GSSLKTAYTALQAWKSAITDDPLRILDTWV-GDNVCSYKGIFCSDLGAQGPVVAGIDLNHANLQGN---LV--------- 134 (414)
Q Consensus 68 ~~~~~~~~~~L~~~~~~~~~~~~~~l~~w~-~~~~c~~~gv~c~~~~~~~~~l~~L~L~~n~l~~~---~~--------- 134 (414)
..+.+.|+.||++||+.+. ||. .+++|. +.+||.|.||.|+ ..+|+.|||+++.+.+. ++
T Consensus 7 ~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~-----~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR-----DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE-----TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred ccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC-----CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence 3447899999999999997 777 899997 6789999999997 25899999999988876 44
Q ss_pred --------------cccCCCCCCCEEECCCCcCCccCcc--ccCCCCCCCEEeCcCccCCCCCchhc-cCCCCCCEEecc
Q 039087 135 --------------KELSLLTDVNLLHLNTNRFSGTVPE--TFKDLTSLQELDLSNNQFSGPFPLVT-LYIPNLVYLDLR 197 (414)
Q Consensus 135 --------------~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls 197 (414)
..|..+++|++|+|++|.+++.+|. .+.++++|++|+|++|.+.+.+|..+ ..+++|++|+++
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 159 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence 3566677777777777777776776 67777777777777777776666554 566777777777
Q ss_pred cccCCCCCCch---hccc-----------------------ccccccccccccccccCcccCC-CCCCEEEcccCcCCCC
Q 039087 198 FNSFSGPLPQD---LFNK-----------------------KLDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGS 250 (414)
Q Consensus 198 ~N~i~~~~p~~---~~~~-----------------------~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~ 250 (414)
+|.+++..|.. +... +|++|++++|.+++.+|. +.. .+|++|++++|++++.
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC
T ss_pred CCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc
Confidence 77766544443 2221 244444444444433333 222 3355555555555544
Q ss_pred CchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCC-CCCcEEEcccCCCCCCCchhhh
Q 039087 251 IPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCM-SDIEILNLAHNQLSGELPDLVC 329 (414)
Q Consensus 251 ~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~ 329 (414)
+|..+..+ ++|++|++++|++++.+|.. .+++|++|++++|.+++.+|..+... ++|++|+|++|++++.+|..+.
T Consensus 239 ~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 239 FSRAISTC-TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp HHHHTTTC-SSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred ccHHHhcC-CCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh
Confidence 44444432 45555555555555444433 45555555555555555666666554 7777777777777777777777
Q ss_pred CCCCCCeEecccccCcccch-hhhhhcccCcEEEecCCCCCCC
Q 039087 330 SLRTLMNLTVAFNFFSGFSQ-ECARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 330 ~l~~L~~L~L~~N~l~~~~~-~~~~~~~~L~~L~ls~N~l~~~ 371 (414)
.+++|++|+|++|.+++.++ ..+..+++|++|++++|++++.
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~ 358 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEEC
T ss_pred cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcc
Confidence 77777777777777775444 3466777777777777777643
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.3e-36 Score=315.64 Aligned_cols=291 Identities=18% Similarity=0.283 Sum_probs=229.1
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcccCCCCCC------CCC--CCC------------CceeeCCCCCCCCcEEEEEcCCC
Q 039087 68 GSSLKTAYTALQAWKSAITDDPLRILDTWVG------DNV--CSY------------KGIFCSDLGAQGPVVAGIDLNHA 127 (414)
Q Consensus 68 ~~~~~~~~~~L~~~~~~~~~~~~~~l~~w~~------~~~--c~~------------~gv~c~~~~~~~~~l~~L~L~~n 127 (414)
..+...|+.||++||+++. +| +|+. .++ |.| .||.|+. ..+|+.|+|+++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~----~~~V~~L~Ls~~ 333 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN----NGRVTGLSLAGF 333 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT----TSCEEEEECTTT
T ss_pred cccchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecC----CCCEEEEECccC
Confidence 4457789999999999985 44 5642 345 999 9999986 468999999999
Q ss_pred CCCCccccccCCCCCCCEEEC-CCCcCCcc--------------------------------------------------
Q 039087 128 NLQGNLVKELSLLTDVNLLHL-NTNRFSGT-------------------------------------------------- 156 (414)
Q Consensus 128 ~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~-------------------------------------------------- 156 (414)
++.|.+|+.|+.+++|++|+| ++|.+++.
T Consensus 334 ~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~ 413 (876)
T 4ecn_A 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413 (876)
T ss_dssp CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT
T ss_pred CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc
Confidence 999999999999999999999 77754332
Q ss_pred --------------------------CccccCCCCCCCEEeCcCccCCC-----------------CCchhcc--CCCCC
Q 039087 157 --------------------------VPETFKDLTSLQELDLSNNQFSG-----------------PFPLVTL--YIPNL 191 (414)
Q Consensus 157 --------------------------~p~~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~~~--~l~~L 191 (414)
+|..|.++++|++|+|++|++++ .+|..+. .+++|
T Consensus 414 ~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L 493 (876)
T 4ecn_A 414 MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL 493 (876)
T ss_dssp SCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred ccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCC
Confidence 78889999999999999999997 3888877 99999
Q ss_pred CEEecccccCCCCCCchhcccc-cccccccccc-ccc-ccCcccCC--------CCCCEEEcccCcCCCCCch--hhhhc
Q 039087 192 VYLDLRFNSFSGPLPQDLFNKK-LDAIFVNNNQ-FSG-ELPQNLGN--------SPASVINLANNRLSGSIPA--SFGIT 258 (414)
Q Consensus 192 ~~L~Ls~N~i~~~~p~~~~~~~-L~~L~l~~n~-l~~-~~~~~~~~--------~~L~~L~ls~N~l~~~~p~--~~~~~ 258 (414)
++|+|++|.+.+.+|..+...+ |++|++++|+ +++ .+|..+.. .+|++|++++|+++ .+|. .+..+
T Consensus 494 ~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L 572 (876)
T 4ecn_A 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKM 572 (876)
T ss_dssp CEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTC
T ss_pred CEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcC
Confidence 9999999999999998888765 9999999998 887 67765543 36899999999998 8888 66664
Q ss_pred ccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCC-CcEEEcccCCCCCCCchhhhCCC-----
Q 039087 259 NSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSD-IEILNLAHNQLSGELPDLVCSLR----- 332 (414)
Q Consensus 259 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~----- 332 (414)
++|++|++++|+++ .+| .|..+++|++|+|++|.++ .+|..+..+++ |++|+|++|+|+ .+|..+..++
T Consensus 573 -~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~ 647 (876)
T 4ecn_A 573 -VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMG 647 (876)
T ss_dssp -TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEE
T ss_pred -CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCC
Confidence 78888888888888 677 7778888888888888887 77777777777 777777777777 5565443332
Q ss_pred --------------------------CCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCCCC
Q 039087 333 --------------------------TLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDMQ 374 (414)
Q Consensus 333 --------------------------~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~ 374 (414)
+|++|+|++|.|+.++...+..+++|+.|+|++|+|+.+|..
T Consensus 648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 455555555555555555555666777777777777765543
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.9e-35 Score=313.04 Aligned_cols=276 Identities=30% Similarity=0.447 Sum_probs=238.2
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
.+.++.|++++|.+++.+|..+..+++|++|+|++|++++.+|..|.++++|++|++++|.+++.+|..+..+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 35688888888888888888888999999999999999888888898999999999999999988898898899999999
Q ss_pred cccccCCCCCCchhcccc-cccccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCc
Q 039087 196 LRFNSFSGPLPQDLFNKK-LDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLT 273 (414)
Q Consensus 196 Ls~N~i~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~ 273 (414)
+++|++++.+|..+...+ |++|++++|++++.+|..+.. .+|++|++++|++++.+|..+..+ ++|++|++++|.++
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-RSLIWLDLNTNLFN 551 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC-TTCCEEECCSSEEE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCCCEEECCCCccC
Confidence 999999888888887755 999999999999888887765 568999999999988888888775 88999999999888
Q ss_pred ccCccc----------------------------------------------------------------------cCCC
Q 039087 274 GCIPEG----------------------------------------------------------------------VGLF 283 (414)
Q Consensus 274 ~~~~~~----------------------------------------------------------------------~~~l 283 (414)
+.+|.. +..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 766653 3345
Q ss_pred CCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEe
Q 039087 284 SEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDF 363 (414)
Q Consensus 284 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~l 363 (414)
++|++|||++|++++.+|..++.+++|++|+|++|++++.+|..+..+++|++|||++|++++.+|..+..++.|++||+
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCc---ccCCCCCCCccccC
Q 039087 364 SANCIPGRDMQRPQP---DCSQIPGGGLSCLR 392 (414)
Q Consensus 364 s~N~l~~~~~~~~~~---~~~~l~~~~l~c~~ 392 (414)
++|+++|..+...+. ...++.+++.-|..
T Consensus 712 s~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CSSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred cCCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence 999999876553221 22345566666753
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.3e-35 Score=283.29 Aligned_cols=284 Identities=17% Similarity=0.200 Sum_probs=228.9
Q ss_pred CChHHHHHHHHHHHHhCCCCCcccCCCCC-----CCCCCCCCceeeCCC-----CCCCCcEEEEEcCCCCCCCccccccC
Q 039087 69 SSLKTAYTALQAWKSAITDDPLRILDTWV-----GDNVCSYKGIFCSDL-----GAQGPVVAGIDLNHANLQGNLVKELS 138 (414)
Q Consensus 69 ~~~~~~~~~L~~~~~~~~~~~~~~l~~w~-----~~~~c~~~gv~c~~~-----~~~~~~l~~L~L~~n~l~~~~~~~l~ 138 (414)
.....++.+|++||..+..++.+....|. ..++|.|.|+.|... .....+++.|+|++|+++ .+|..+.
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~ 101 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF 101 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence 34678899999999988777877778883 467899999999521 112467999999999998 6777788
Q ss_pred CCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhccccccccc
Q 039087 139 LLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIF 218 (414)
Q Consensus 139 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~ 218 (414)
.+++|++|+|++|.++ .+|..|.++++|++|+|++|.++ .+|..+..+++|++|++++|++.+.+|..+....
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~----- 174 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD----- 174 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-----
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc-----
Confidence 8999999999999999 88888999999999999999999 8888999999999999999888878887654311
Q ss_pred ccccccccccCccc-CCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCC
Q 039087 219 VNNNQFSGELPQNL-GNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLM 297 (414)
Q Consensus 219 l~~n~l~~~~~~~~-~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 297 (414)
+ +..+ ...+|++|++++|+++ .+|..+..+ ++|++|++++|+++ .+|..+..+++|++|++++|.+.
T Consensus 175 -----~----~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l-~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 175 -----A----SGEHQGLVNLQSLRLEWTGIR-SLPASIANL-QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTAL 242 (328)
T ss_dssp ----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGC-TTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTC
T ss_pred -----c----hhhhccCCCCCEEECcCCCcC-cchHhhcCC-CCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcch
Confidence 0 1111 1246888888888888 788777664 78888888888888 46667888888888888888888
Q ss_pred CCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCC
Q 039087 298 GHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRD 372 (414)
Q Consensus 298 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~ 372 (414)
+.+|..+..+++|++|+|++|++.+.+|..+..+++|++|+|++|.+.+.+|+.+..+++|+.+++..|.+....
T Consensus 243 ~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 888888888888888888888888888888888888888888888888888888888888888888888776654
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.7e-34 Score=282.39 Aligned_cols=276 Identities=16% Similarity=0.147 Sum_probs=198.5
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccC-ccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEE
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTV-PETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYL 194 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 194 (414)
++++++|||++|.+++..+..|..+++|++|+|++|.+.+.+ +..|.++++|++|+|++|++++..|..|..+++|++|
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 366888888888888777777777777888888777776443 4567777777777777777776667777777777777
Q ss_pred ecccccCCCCCCch--hccc-ccccccccccccccccCcc-cC-CCCCCEEEcccCcCCCCCchhh--------------
Q 039087 195 DLRFNSFSGPLPQD--LFNK-KLDAIFVNNNQFSGELPQN-LG-NSPASVINLANNRLSGSIPASF-------------- 255 (414)
Q Consensus 195 ~Ls~N~i~~~~p~~--~~~~-~L~~L~l~~n~l~~~~~~~-~~-~~~L~~L~ls~N~l~~~~p~~~-------------- 255 (414)
++++|.+++.++.. +... +|++|++++|.+++..|.. +. ..+|++|++++|++++..+..+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 77777776433332 3332 2666666666666554443 22 2345555555555543333222
Q ss_pred --------------------------------------------hhc---------------------------------
Q 039087 256 --------------------------------------------GIT--------------------------------- 258 (414)
Q Consensus 256 --------------------------------------------~~~--------------------------------- 258 (414)
...
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 110
Q ss_pred -----ccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCC
Q 039087 259 -----NSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRT 333 (414)
Q Consensus 259 -----~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 333 (414)
.++|++|++++|++.+..|..|..+++|++|++++|++++..|..|..+++|++|+|++|++++..|..+..+++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 135667777777777667788889999999999999999888889999999999999999999777888999999
Q ss_pred CCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCCCCC----CCcccCCCCCCCcccc
Q 039087 334 LMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDMQR----PQPDCSQIPGGGLSCL 391 (414)
Q Consensus 334 L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~----~~~~~~~l~~~~l~c~ 391 (414)
|++|+|++|++++..+..+..+++|++|++++|+|++++... +.-....+.++++.|.
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 999999999999998888888999999999999999887542 2233344555666664
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.3e-33 Score=274.95 Aligned_cols=257 Identities=18% Similarity=0.196 Sum_probs=210.9
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccc--cCCCCCCCEEeCcCccCCCCCchh-ccCCCCCC
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPET--FKDLTSLQELDLSNNQFSGPFPLV-TLYIPNLV 192 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~ 192 (414)
.+++++|+|++|.+++..+..|..+++|++|+|++|++++..+.. |.++++|++|+|++|++++..|.. +..+++|+
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence 467888888888888777778888888888888888887654444 778888888888888888666665 77888888
Q ss_pred EEecccccCCCCCCchhcc-----------------------------------cccccccccccccccccCccc-----
Q 039087 193 YLDLRFNSFSGPLPQDLFN-----------------------------------KKLDAIFVNNNQFSGELPQNL----- 232 (414)
Q Consensus 193 ~L~Ls~N~i~~~~p~~~~~-----------------------------------~~L~~L~l~~n~l~~~~~~~~----- 232 (414)
+|++++|.+++..+..+.. .+|++|++++|.+++..|..+
T Consensus 158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 237 (455)
T 3v47_A 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237 (455)
T ss_dssp EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc
Confidence 8888888887665554432 237777777776654333221
Q ss_pred -----------------------------------CCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCc
Q 039087 233 -----------------------------------GNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIP 277 (414)
Q Consensus 233 -----------------------------------~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~ 277 (414)
...+|++|++++|++.+..|..+.. +++|++|++++|++++..+
T Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH-FTDLEQLTLAQNEINKIDD 316 (455)
T ss_dssp TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-CTTCCEEECTTSCCCEECT
T ss_pred ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc-CCCCCEEECCCCcccccCh
Confidence 0135888888888888666776665 4899999999999998888
Q ss_pred cccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhccc
Q 039087 278 EGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIR 357 (414)
Q Consensus 278 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 357 (414)
..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|+|+++++..+..+++
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 396 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS 396 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCc
Confidence 89999999999999999999888999999999999999999999878999999999999999999999998888899999
Q ss_pred CcEEEecCCCCCCCCC
Q 039087 358 NVGFDFSANCIPGRDM 373 (414)
Q Consensus 358 L~~L~ls~N~l~~~~~ 373 (414)
|++|++++|++++...
T Consensus 397 L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 397 LQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCBCCCTT
T ss_pred ccEEEccCCCcccCCC
Confidence 9999999999998754
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-31 Score=267.11 Aligned_cols=269 Identities=17% Similarity=0.136 Sum_probs=210.2
Q ss_pred CCceeeCCCC------CCCCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccC
Q 039087 104 YKGIFCSDLG------AQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQF 177 (414)
Q Consensus 104 ~~gv~c~~~~------~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 177 (414)
|..|.|.... ..+.+++.|||++|++++..+..|..+++|++|+|++|.|++..|..|.++++|++|+|++|++
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 5567775431 2356899999999999988888999999999999999999988899999999999999999999
Q ss_pred CCCCchhccCCCCCCEEecccccCCCCCCchhcccc-cccccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhh
Q 039087 178 SGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKK-LDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASF 255 (414)
Q Consensus 178 ~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~ 255 (414)
+...+..|..+++|++|+|++|++++..+..+.... |++|++++|.+++..+..+.. .+|++|++++|+++ .++...
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~ 171 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEA 171 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhH
Confidence 966666789999999999999999866666666654 999999999998776766665 56999999999998 555544
Q ss_pred hhcccCCcEEEccCCcCcccCccccCCCCCCCEEEcc------------------------CCCCCCCCcccccCCCCCc
Q 039087 256 GITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVS------------------------FNSLMGHLPDTISCMSDIE 311 (414)
Q Consensus 256 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls------------------------~N~l~~~~p~~l~~l~~L~ 311 (414)
+..+++|++|++++|.+.+..+..|..+++|++|+++ +|+++...+..+..+++|+
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 4445888888888888876666666666655555555 4555533334566777777
Q ss_pred EEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCCC
Q 039087 312 ILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDM 373 (414)
Q Consensus 312 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~ 373 (414)
+|+|++|.|++..+..|..+++|++|+|++|+++++.+..+..+++|++|++++|.|++++.
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence 77777777776556667777778888888888777777777777788888888888887654
No 10
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=2e-31 Score=254.48 Aligned_cols=265 Identities=19% Similarity=0.238 Sum_probs=213.4
Q ss_pred CCCCCCCceeeCCCC------CCCCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeC
Q 039087 99 DNVCSYKGIFCSDLG------AQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDL 172 (414)
Q Consensus 99 ~~~c~~~gv~c~~~~------~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 172 (414)
...|.|+.+.|.... ..++.++.|+|++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 345778888887532 12467889999999998877778899999999999999998777888999999999999
Q ss_pred cCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccc-ccccccccccccc--ccCcccCC-CCCCEEEcccCcCC
Q 039087 173 SNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKK-LDAIFVNNNQFSG--ELPQNLGN-SPASVINLANNRLS 248 (414)
Q Consensus 173 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~l~~n~l~~--~~~~~~~~-~~L~~L~ls~N~l~ 248 (414)
++|+++ .+|..+. ++|++|++++|.+++..+..+.... |++|++++|.+.. ..+..+.. .+|++|++++|.++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 999988 6666554 7899999999999844444454444 9999999998863 44444443 56899999999988
Q ss_pred CCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhh
Q 039087 249 GSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLV 328 (414)
Q Consensus 249 ~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 328 (414)
.+|..+. ++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|+|++|+++ .+|..+
T Consensus 185 -~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 185 -TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp -SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred -cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence 6776654 68999999999998777888889999999999999998777778888899999999999998 788888
Q ss_pred hCCCCCCeEecccccCcccchhhhhh------cccCcEEEecCCCCCCC
Q 039087 329 CSLRTLMNLTVAFNFFSGFSQECARL------LIRNVGFDFSANCIPGR 371 (414)
Q Consensus 329 ~~l~~L~~L~L~~N~l~~~~~~~~~~------~~~L~~L~ls~N~l~~~ 371 (414)
..+++|++|++++|+|+++.+..+.. ...++.+++++|++...
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence 88999999999999999887766532 35678899999988653
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=7.3e-33 Score=262.59 Aligned_cols=232 Identities=26% Similarity=0.339 Sum_probs=214.4
Q ss_pred CCCCEEECCCCcCCc--cCccccCCCCCCCEEeCcC-ccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccc-ccc
Q 039087 141 TDVNLLHLNTNRFSG--TVPETFKDLTSLQELDLSN-NQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKK-LDA 216 (414)
Q Consensus 141 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~ 216 (414)
.+++.|+|++|.+++ .+|..|.++++|++|+|++ |.+.+.+|..|..+++|++|++++|.+++.+|..+.... |++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 8999999999999999995 999999999999999999999999999988999888765 999
Q ss_pred ccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCC
Q 039087 217 IFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNS 295 (414)
Q Consensus 217 L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 295 (414)
|++++|.+++.+|..+.. .+|++|++++|++++.+|..+..+.++|++|++++|++++.+|..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999999888888765 67999999999999999999988644999999999999999999999987 9999999999
Q ss_pred CCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCCCC
Q 039087 296 LMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDMQ 374 (414)
Q Consensus 296 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~ 374 (414)
+++.+|..|..+++|++|+|++|++++.+|. +..+++|++|+|++|+|++.+|..+..+++|++|++++|+|++..+.
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 9999999999999999999999999966655 78899999999999999999999999999999999999999976443
No 12
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=1.3e-31 Score=255.98 Aligned_cols=261 Identities=20% Similarity=0.273 Sum_probs=223.5
Q ss_pred CCCCCceeeCCCC------CCCCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcC
Q 039087 101 VCSYKGIFCSDLG------AQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSN 174 (414)
Q Consensus 101 ~c~~~gv~c~~~~------~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 174 (414)
.|.|+.+.|.... ...++++.|+|++|.+.+..+..|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 4779999887532 1246899999999999988788899999999999999999988888999999999999999
Q ss_pred ccCCCCCchhccCCCCCCEEecccccCCCCCCc-hhcccc-ccccccccccccc--ccCcccCCCCCCEEEcccCcCCCC
Q 039087 175 NQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQ-DLFNKK-LDAIFVNNNQFSG--ELPQNLGNSPASVINLANNRLSGS 250 (414)
Q Consensus 175 N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~-~~~~~~-L~~L~l~~n~l~~--~~~~~~~~~~L~~L~ls~N~l~~~ 250 (414)
|+++ .+|..+. ++|++|++++|+++ .++. .+.... |++|++++|.++. ..+..+...+|++|++++|+++ .
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~-~ 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-G 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS-S
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCC-c
Confidence 9999 6666554 79999999999998 4554 455444 9999999999963 5566666678999999999999 6
Q ss_pred CchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhC
Q 039087 251 IPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCS 330 (414)
Q Consensus 251 ~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 330 (414)
+|..+. ++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+|++|+++ .+|..+..
T Consensus 187 l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 IPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp CCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred cCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 777664 78999999999999777788999999999999999999888888999999999999999999 88888999
Q ss_pred CCCCCeEecccccCcccchhhhhh------cccCcEEEecCCCCCC
Q 039087 331 LRTLMNLTVAFNFFSGFSQECARL------LIRNVGFDFSANCIPG 370 (414)
Q Consensus 331 l~~L~~L~L~~N~l~~~~~~~~~~------~~~L~~L~ls~N~l~~ 370 (414)
+++|++|++++|+|+++.+..+.. ...|+.|++++|++..
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 999999999999999988766543 3568899999999873
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=2.4e-31 Score=266.60 Aligned_cols=255 Identities=15% Similarity=0.108 Sum_probs=179.8
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
.+++++|+|++|.+.+..+..|..+++|++|+|++|+++...+..|.++++|++|+|++|++++..+..|..+++|++|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 34566666666666655555566666666666666666544334455566666666666665555555555555555555
Q ss_pred cccccCCCCCCchhcccc-------------------------cccccccccccccccCcccCC-CCCCEEEcccCcCCC
Q 039087 196 LRFNSFSGPLPQDLFNKK-------------------------LDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSG 249 (414)
Q Consensus 196 Ls~N~i~~~~p~~~~~~~-------------------------L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~ 249 (414)
+++|.+++..+..+.... |+.|++++|.+.+..+..+.. .+|++|++++|.+.+
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 555555533333333322 444555555444333333332 346666666666555
Q ss_pred CCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhh
Q 039087 250 SIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVC 329 (414)
Q Consensus 250 ~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 329 (414)
.++...+.. .+|++|++++|+++...+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..|.
T Consensus 215 ~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (477)
T 2id5_A 215 TMTPNCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293 (477)
T ss_dssp EECTTTTTT-CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred ccCcccccC-ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence 666655554 4888999999999854446789999999999999999988888899999999999999999988899999
Q ss_pred CCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCC
Q 039087 330 SLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 330 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~ 371 (414)
.+++|++|+|++|+|+++++..+..+++|++|++++|+++..
T Consensus 294 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 999999999999999999999999999999999999999864
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.3e-30 Score=268.90 Aligned_cols=264 Identities=19% Similarity=0.229 Sum_probs=182.4
Q ss_pred CCceeeCCCC------CCCCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccC
Q 039087 104 YKGIFCSDLG------AQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQF 177 (414)
Q Consensus 104 ~~gv~c~~~~------~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 177 (414)
+..+.|...+ ..+..+++|||++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 4456776432 2356799999999999988888999999999999999999988899999999999999999999
Q ss_pred CCCCchhccCCCCCCEEecccccCCCCCCchhcccc-ccccccccccccc-ccCcccCCCCCCEEEcccCcCCCCCchhh
Q 039087 178 SGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKK-LDAIFVNNNQFSG-ELPQNLGNSPASVINLANNRLSGSIPASF 255 (414)
Q Consensus 178 ~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~l~~n~l~~-~~~~~~~~~~L~~L~ls~N~l~~~~p~~~ 255 (414)
++..|..|..+++|++|++++|.+++..+..+.... |++|++++|.+++ ..|..+...+|++|++++|.+++..+..+
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 173 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh
Confidence 988888999999999999999999854455565544 9999999999986 34656666778999999998885555555
Q ss_pred hhcccCCc--EEEccCCcCcccCccccCCC--------------------------------------------------
Q 039087 256 GITNSKLK--EILFLNNQLTGCIPEGVGLF-------------------------------------------------- 283 (414)
Q Consensus 256 ~~~~~~L~--~L~Ls~N~l~~~~~~~~~~l-------------------------------------------------- 283 (414)
..+ ++|+ +|++++|.+++..|..+...
T Consensus 174 ~~l-~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 174 SSL-QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp HTT-TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred hhh-cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence 543 6677 67777777665444332210
Q ss_pred -CCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEE
Q 039087 284 -SEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFD 362 (414)
Q Consensus 284 -~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ 362 (414)
.+|++|++++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 253 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred cCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence 03444555555555444444555555555555555555 4444455555555555555555544444444444455555
Q ss_pred ecCCCCC
Q 039087 363 FSANCIP 369 (414)
Q Consensus 363 ls~N~l~ 369 (414)
+++|.+.
T Consensus 332 l~~n~~~ 338 (606)
T 3t6q_A 332 IKGNTKR 338 (606)
T ss_dssp CCSCSSC
T ss_pred CCCCCcc
Confidence 5555444
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.5e-30 Score=267.96 Aligned_cols=270 Identities=19% Similarity=0.195 Sum_probs=177.7
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEec
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDL 196 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 196 (414)
.+++.+++++|.+....+..|..+++|++|+|++|.|++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 44566666666665544444566666666666666666555556666666666666666666555555666666666666
Q ss_pred ccccCCCCCCchh-ccc-ccccccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhhh-----------------
Q 039087 197 RFNSFSGPLPQDL-FNK-KLDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFG----------------- 256 (414)
Q Consensus 197 s~N~i~~~~p~~~-~~~-~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~----------------- 256 (414)
++|.++ .+|..+ ... +|++|++++|.+++..|..+.. .+|++|++++|.+++.-...+.
T Consensus 131 ~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 666666 444443 222 3666666666666555544443 3466666666665522111100
Q ss_pred -------------------hcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccc
Q 039087 257 -------------------ITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAH 317 (414)
Q Consensus 257 -------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 317 (414)
...++|+.|++++|.+++ +..+..+++|++|+|++|.+++..|..|..+++|++|+|++
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred CchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 001356666777777664 35678889999999999999988889999999999999999
Q ss_pred CCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCCCCC-CCcccCCCCCCCcccc
Q 039087 318 NQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDMQR-PQPDCSQIPGGGLSCL 391 (414)
Q Consensus 318 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~-~~~~~~~l~~~~l~c~ 391 (414)
|.++ .+|..+..+++|++|+|++|.++.+++ .+..+++|++|++++|+|++.+... +......+.++++.|.
T Consensus 288 N~l~-~l~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 288 NRLV-ALNLYGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SCCC-EEECSSSCCTTCCEEECCSSCCCCCGG-GHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred CCCC-CCCcccccCCCCcEEECCCCCCCccCc-ccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCCh
Confidence 9998 567777788999999999999996554 4567788999999999998876442 2223334445565553
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=4.4e-30 Score=250.77 Aligned_cols=266 Identities=20% Similarity=0.229 Sum_probs=166.8
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEec
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDL 196 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 196 (414)
.+++.|+++++.+....+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+++..|..|..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 44555555555555433333455555555555555555444445555555555555555555444555555555555555
Q ss_pred ccccCCCCCCchhc-c-cccccccccccccccccCcccCC-CCCCEEEcccCcCCC------------------------
Q 039087 197 RFNSFSGPLPQDLF-N-KKLDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSG------------------------ 249 (414)
Q Consensus 197 s~N~i~~~~p~~~~-~-~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~------------------------ 249 (414)
++|.++ .+|..++ . .+|++|++++|.+++..+..+.. .+|++|++++|++++
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 203 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence 555555 4444332 2 22555555555555444433333 345555555555542
Q ss_pred ---------------CCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEE
Q 039087 250 ---------------SIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILN 314 (414)
Q Consensus 250 ---------------~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 314 (414)
.+|... .++|++|++++|++++. ..+..+++|++|++++|.+++..|..|..+++|++|+
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp CSSCSEEECCSSCCCEEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred CCcceEEECCCCeeeeccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 112111 24577777777777642 5678889999999999999988888999999999999
Q ss_pred cccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCCCCC-CCcccCCCCCCCccc
Q 039087 315 LAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDMQR-PQPDCSQIPGGGLSC 390 (414)
Q Consensus 315 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~-~~~~~~~l~~~~l~c 390 (414)
|++|+++ .+|..+..+++|++|+|++|+++.+++. +..+++|++|++++|+|+.++... +.-....+.++++.|
T Consensus 279 L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 279 ISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCSSCCC-EEECSSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEH
T ss_pred CCCCcCc-ccCcccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccc
Confidence 9999998 5677777889999999999999876544 566788999999999998886432 222223344455554
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=2.4e-30 Score=266.80 Aligned_cols=271 Identities=18% Similarity=0.172 Sum_probs=163.5
Q ss_pred cEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecc
Q 039087 118 VVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLR 197 (414)
Q Consensus 118 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 197 (414)
.++.|++++|.+.+..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 4666666666666555555666666666666666665 455555566666666666666654445555555555555555
Q ss_pred cccCCCCCCch---------------------------hcccc-cccccccccccccccCcccCC-CCCCEEEcccCcCC
Q 039087 198 FNSFSGPLPQD---------------------------LFNKK-LDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLS 248 (414)
Q Consensus 198 ~N~i~~~~p~~---------------------------~~~~~-L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~ 248 (414)
+|.+.+.+|.. +.... |++|++++|.+.+..+..+.. .+|++|++++|++.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 55554444332 22222 555555555555444444433 34666666666665
Q ss_pred CCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCC---CcccccCCCCCcEEEcccCCCCCCCc
Q 039087 249 GSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGH---LPDTISCMSDIEILNLAHNQLSGELP 325 (414)
Q Consensus 249 ~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p 325 (414)
+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 444443223346677777777776666666666777777777777776642 22456667777777777777776666
Q ss_pred hhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCCCCC----CCcccCCCCCCCccc
Q 039087 326 DLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDMQR----PQPDCSQIPGGGLSC 390 (414)
Q Consensus 326 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~----~~~~~~~l~~~~l~c 390 (414)
..|..+++|++|+|++|++++..++.+..++.| +|++++|+|++.++.. +.-....+.++++.|
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 777777777777777777777777777777777 7777777777765431 222344555566665
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.4e-29 Score=241.54 Aligned_cols=247 Identities=20% Similarity=0.213 Sum_probs=213.6
Q ss_pred cEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecc
Q 039087 118 VVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLR 197 (414)
Q Consensus 118 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 197 (414)
+++.++++++.++. +|..+. +++++|+|++|+|++..+..|.++++|++|+|++|.+++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 57789999999884 455443 689999999999997777789999999999999999998889999999999999999
Q ss_pred cccCCCCCCchhcccccccccccccccccccCcccCC-CCCCEEEcccCcCCC--CCchhhhhcccCCcEEEccCCcCcc
Q 039087 198 FNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSG--SIPASFGITNSKLKEILFLNNQLTG 274 (414)
Q Consensus 198 ~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~--~~p~~~~~~~~~L~~L~Ls~N~l~~ 274 (414)
+|+++ .+|..++ .+|++|++++|.+++..+..+.. .+|++|++++|.+.. ..+..+.. +++|++|++++|+++
T Consensus 109 ~n~l~-~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-MKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSCCS-BCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG-CTTCCEEECCSSCCC-
T ss_pred CCcCC-ccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccC-CCCcCEEECCCCccc-
Confidence 99998 7887766 57999999999999666555554 679999999999963 44555555 489999999999998
Q ss_pred cCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhh
Q 039087 275 CIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARL 354 (414)
Q Consensus 275 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 354 (414)
.+|..+. ++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|+|++|+++.+ |..+..
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~ 261 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLAD 261 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTT
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-Chhhcc
Confidence 4665543 8999999999999988899999999999999999999977777899999999999999999955 445677
Q ss_pred cccCcEEEecCCCCCCCCCC
Q 039087 355 LIRNVGFDFSANCIPGRDMQ 374 (414)
Q Consensus 355 ~~~L~~L~ls~N~l~~~~~~ 374 (414)
+++|++|++++|+|++++..
T Consensus 262 l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTT
T ss_pred CCCcCEEECCCCcCCccChh
Confidence 88999999999999998755
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=3.2e-31 Score=274.80 Aligned_cols=251 Identities=20% Similarity=0.282 Sum_probs=177.2
Q ss_pred CCcEEEEEcCCCCCCCc-----------------cccccC--CCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCcc
Q 039087 116 GPVVAGIDLNHANLQGN-----------------LVKELS--LLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQ 176 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 176 (414)
.+++++|+|++|.+++. +|..+. ++++|++|+|++|++.+.+|..|.++++|++|+|++|+
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 56789999999999885 888888 89999999999999888899989999999999999998
Q ss_pred -CCC-CCchhccCC------CCCCEEecccccCCCCCCc--hhcccc-cccccccccccccccCcccCC-CCCCEEEccc
Q 039087 177 -FSG-PFPLVTLYI------PNLVYLDLRFNSFSGPLPQ--DLFNKK-LDAIFVNNNQFSGELPQNLGN-SPASVINLAN 244 (414)
Q Consensus 177 -l~~-~~p~~~~~l------~~L~~L~Ls~N~i~~~~p~--~~~~~~-L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~ 244 (414)
+++ .+|..+..+ ++|++|++++|+++ .+|. .+.... |++|++++|.++|.+| .+.. .+|++|++++
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 887 788877765 88888888888888 7887 666654 8888888888887777 4433 4577777777
Q ss_pred CcCCCCCchhhhhcccC-CcEEEccCCcCcccCccccCCCC--CCCEEEccCCCCCCCCccccc-------CCCCCcEEE
Q 039087 245 NRLSGSIPASFGITNSK-LKEILFLNNQLTGCIPEGVGLFS--EMQVFDVSFNSLMGHLPDTIS-------CMSDIEILN 314 (414)
Q Consensus 245 N~l~~~~p~~~~~~~~~-L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~p~~l~-------~l~~L~~L~ 314 (414)
|+++ .+|..+..+ ++ |++|++++|+++ .+|..+..++ +|++|++++|.+++.+|..|. .+++|++|+
T Consensus 363 N~l~-~lp~~l~~l-~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 363 NQIT-EIPANFCGF-TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp SEEE-ECCTTSEEE-CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred Cccc-cccHhhhhh-cccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 7777 666666554 55 777777777776 5666655543 667777777776666666665 555666666
Q ss_pred cccCCCCCCCch-hhhCCCCCCeEecccccCcccchhhhhhcc-------cCcEEEecCCCCCCCC
Q 039087 315 LAHNQLSGELPD-LVCSLRTLMNLTVAFNFFSGFSQECARLLI-------RNVGFDFSANCIPGRD 372 (414)
Q Consensus 315 Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~-------~L~~L~ls~N~l~~~~ 372 (414)
|++|+|+ .+|. .+..+++|++|+|++|+|+.++...+.... +|++|++++|+|+.+|
T Consensus 440 Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 504 (636)
T 4eco_A 440 LSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504 (636)
T ss_dssp CCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC
T ss_pred CcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccC
Confidence 6666666 3333 334456666666666666544433333221 4555555555555443
No 20
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=8.2e-31 Score=252.58 Aligned_cols=271 Identities=17% Similarity=0.186 Sum_probs=222.0
Q ss_pred CCCCCCCceeeCCC--------CCCCCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEE
Q 039087 99 DNVCSYKGIFCSDL--------GAQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQEL 170 (414)
Q Consensus 99 ~~~c~~~gv~c~~~--------~~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 170 (414)
...|.|.++ |+.. ....+++++|++++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|
T Consensus 27 ~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 27 SLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 456778776 4321 1124589999999999998777789999999999999999998788889999999999
Q ss_pred eCcCccCCCCCchhccCCCCCCEEecccccCCCCCCc--hhccc-ccccccccccc-cccccCcccCC-CCCCEEEcccC
Q 039087 171 DLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQ--DLFNK-KLDAIFVNNNQ-FSGELPQNLGN-SPASVINLANN 245 (414)
Q Consensus 171 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~--~~~~~-~L~~L~l~~n~-l~~~~~~~~~~-~~L~~L~ls~N 245 (414)
+|++|++++..+..|..+++|++|++++|+++ .+|. .+... +|++|++++|. +....+..+.. .+|++|++++|
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 99999999655556899999999999999998 6665 44444 49999999994 66444555654 56999999999
Q ss_pred cCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCccccc---CCCCCcEEEcccCCCCC
Q 039087 246 RLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTIS---CMSDIEILNLAHNQLSG 322 (414)
Q Consensus 246 ~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~ 322 (414)
.+++..|..+..+ ++|++|++++|++.......+..+++|++|++++|.+++..+..+. ....++.++++++.+++
T Consensus 185 ~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 185 DLQSYEPKSLKSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TCCEECTTTTTTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred CcCccCHHHHhcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 9997777777764 8999999999999743333455689999999999999976555443 45778999999999986
Q ss_pred ----CCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCC
Q 039087 323 ----ELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRD 372 (414)
Q Consensus 323 ----~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~ 372 (414)
.+|..+..+++|++|+|++|+|+.++...+..+++|++|++++|++++..
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 37888999999999999999999887777888999999999999998853
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=4.2e-30 Score=255.93 Aligned_cols=227 Identities=20% Similarity=0.195 Sum_probs=144.1
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
+++++.|+|++|++++..+..|..+++|++|+|++|+|++..+..|.++++|++|+|++|+++...+..|..+++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 45678888888888877777788888888888888888776677788888888888888888755556677788888888
Q ss_pred cccccCCCCCCch-hccc-ccccccccccccccccCc-ccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCc
Q 039087 196 LRFNSFSGPLPQD-LFNK-KLDAIFVNNNQFSGELPQ-NLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQ 271 (414)
Q Consensus 196 Ls~N~i~~~~p~~-~~~~-~L~~L~l~~n~l~~~~~~-~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~ 271 (414)
|++|+++ .+|.. +... +|++|++++|+..+.++. .+.. .+|++|++++|+++ .+|. +.. +++|++|+|++|+
T Consensus 154 L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~-l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 154 LRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTP-LVGLEELEMSGNH 229 (452)
T ss_dssp CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC-CTT-CTTCCEEECTTSC
T ss_pred CCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cccc-ccc-cccccEEECcCCc
Confidence 8888877 44433 3232 266666666433333333 2222 34666666666665 3432 222 3556666666666
Q ss_pred CcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcc
Q 039087 272 LTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSG 346 (414)
Q Consensus 272 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 346 (414)
+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..+..+++|++|+|++|.+..
T Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 665555566666666666666666665555556666666666666666664444445556666666666665543
No 22
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=6e-30 Score=244.08 Aligned_cols=258 Identities=14% Similarity=0.146 Sum_probs=204.0
Q ss_pred CCCcccCCCCCC---CCCCCCCceeeCCCCCCCCcEEEEEcCCCCCCCc----ccccc--CCCCCCCEEECCCCcCCccC
Q 039087 87 DDPLRILDTWVG---DNVCSYKGIFCSDLGAQGPVVAGIDLNHANLQGN----LVKEL--SLLTDVNLLHLNTNRFSGTV 157 (414)
Q Consensus 87 ~~~~~~l~~w~~---~~~c~~~gv~c~~~~~~~~~l~~L~L~~n~l~~~----~~~~l--~~l~~L~~L~Ls~n~l~~~~ 157 (414)
.++..++..|+. .++|.|.+..|...... . ..+...|. .+..+ ....+++.|+|++|.++ .+
T Consensus 26 ~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~-~-------~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~l 96 (328)
T 4fcg_A 26 RPYHDVLSQWQRHYNADRNRWHSAWRQANSNN-P-------QIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF 96 (328)
T ss_dssp CCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTC-T-------TSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SC
T ss_pred chHHHHHHHHHHhccCCchhhhhhhccccccc-c-------cccccCCcchhhhHHHHhcccccceeEEEccCCCch-hc
Confidence 355556777864 57899988887321000 0 01111111 11111 23688999999999999 78
Q ss_pred ccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccc-cccccccccccccccCcccCCCC
Q 039087 158 PETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKK-LDAIFVNNNQFSGELPQNLGNSP 236 (414)
Q Consensus 158 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~ 236 (414)
|..+.++++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+.... |++|++++|++.+.+|..+..
T Consensus 97 p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~-- 172 (328)
T 4fcg_A 97 PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS-- 172 (328)
T ss_dssp CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE--
T ss_pred ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh--
Confidence 888989999999999999999 89999999999999999999999 7887776644 777777777666666654322
Q ss_pred CCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcc
Q 039087 237 ASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLA 316 (414)
Q Consensus 237 L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 316 (414)
. .+ +..+.. +++|++|++++|+++ .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|+
T Consensus 173 ---~-----~~----~~~~~~-l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 173 ---T-----DA----SGEHQG-LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp ---E-----C-----CCCEEE-STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECT
T ss_pred ---c-----cc----hhhhcc-CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECc
Confidence 0 11 111222 489999999999999 88999999999999999999999 567789999999999999
Q ss_pred cCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCC
Q 039087 317 HNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRD 372 (414)
Q Consensus 317 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~ 372 (414)
+|++.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|++|++++|++.+..
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 99999999999999999999999999999999988999999999999999988764
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=5.6e-30 Score=259.34 Aligned_cols=106 Identities=22% Similarity=0.290 Sum_probs=66.1
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEec
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDL 196 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 196 (414)
+++++|+|++|.+++..+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 45666666666666666566666666666666666666555666666666666666666666 45544 5666666666
Q ss_pred ccccCCC-CCCchhcccc-cccccccccccc
Q 039087 197 RFNSFSG-PLPQDLFNKK-LDAIFVNNNQFS 225 (414)
Q Consensus 197 s~N~i~~-~~p~~~~~~~-L~~L~l~~n~l~ 225 (414)
++|.+++ .+|..+.... |++|++++|.++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccc
Confidence 6666664 3455554433 555555555554
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.8e-29 Score=260.77 Aligned_cols=276 Identities=18% Similarity=0.186 Sum_probs=199.7
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
+..+++|||++|+|+...+.+|.++++|++|+|++|+|++..+.+|.++++|++|+|++|+|++..+..|.++++|++|+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 46799999999999988888899999999999999999977777899999999999999999966667788899999999
Q ss_pred cccccCCCCCCchhcccc-ccccccccccccc-ccCcccCC-CCCCEEEcccCcCCCCCchhhhh---------------
Q 039087 196 LRFNSFSGPLPQDLFNKK-LDAIFVNNNQFSG-ELPQNLGN-SPASVINLANNRLSGSIPASFGI--------------- 257 (414)
Q Consensus 196 Ls~N~i~~~~p~~~~~~~-L~~L~l~~n~l~~-~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~--------------- 257 (414)
|++|++++..+..+.... |++|++++|.++. .+|..+.. .+|++|++++|++++..+..+..
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 999998843333444433 8888888887764 23444443 45666666666554211110000
Q ss_pred --------------------------------------------------------------------------------
Q 039087 258 -------------------------------------------------------------------------------- 257 (414)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (414)
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence
Q ss_pred ------------------------------------------------------------------------------cc
Q 039087 258 ------------------------------------------------------------------------------TN 259 (414)
Q Consensus 258 ------------------------------------------------------------------------------~~ 259 (414)
.+
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence 01
Q ss_pred cCCcEEEccCCcCc------------------------------------------------------------------
Q 039087 260 SKLKEILFLNNQLT------------------------------------------------------------------ 273 (414)
Q Consensus 260 ~~L~~L~Ls~N~l~------------------------------------------------------------------ 273 (414)
++|++|++++|.+.
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence 12333333333321
Q ss_pred --------ccCccccCCCCCCCEEEccCCCCC-CCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccC
Q 039087 274 --------GCIPEGVGLFSEMQVFDVSFNSLM-GHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFF 344 (414)
Q Consensus 274 --------~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 344 (414)
...+..+..+++|++|++++|.+. ...|..|..+++|++|+|++|+|++..|..|..+++|++|+|++|+|
T Consensus 451 ~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l 530 (635)
T 4g8a_A 451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530 (635)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence 111222333445556666666532 34567788899999999999999988889999999999999999999
Q ss_pred cccchhhhhhcccCcEEEecCCCCCCCCCCCCC-----cccCCCCCCCcccc
Q 039087 345 SGFSQECARLLIRNVGFDFSANCIPGRDMQRPQ-----PDCSQIPGGGLSCL 391 (414)
Q Consensus 345 ~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~-----~~~~~l~~~~l~c~ 391 (414)
+++++..+..+++|++||+++|+|++.+..... -....+.++++.|.
T Consensus 531 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 531 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 999999999999999999999999998765322 23345666888874
No 25
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=4.4e-30 Score=242.47 Aligned_cols=229 Identities=17% Similarity=0.219 Sum_probs=136.4
Q ss_pred CCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCC--CchhccCCCCCCEEecccccCCCCCCchhcccc-cccc
Q 039087 141 TDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGP--FPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKK-LDAI 217 (414)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L 217 (414)
++|++|+|++|+++...+..|.++++|++|+|++|.++.. .+..+..+++|++|++++|.++ .+|..+.... |++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 3455555555555532223345555555555555555411 1344444555555555555555 3444443332 5555
Q ss_pred cccccccccccC-cccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcc-cCccccCCCCCCCEEEccCC
Q 039087 218 FVNNNQFSGELP-QNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTG-CIPEGVGLFSEMQVFDVSFN 294 (414)
Q Consensus 218 ~l~~n~l~~~~~-~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N 294 (414)
++++|.+++..+ ..+.. .+|++|++++|.+.+..+..+.. +++|++|++++|.+.+ .+|..+..+++|++|++++|
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 555555553322 22222 45677777777766444444444 3677777777777764 45666777777777777777
Q ss_pred CCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhc-ccCcEEEecCCCCCCC
Q 039087 295 SLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLL-IRNVGFDFSANCIPGR 371 (414)
Q Consensus 295 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~-~~L~~L~ls~N~l~~~ 371 (414)
.+++..|..+..+++|++|+|++|++++..+..+..+++|++|+|++|++++..+..+..+ ++|++|++++|++++.
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 7776666677777777777777777775555566677777777777777777666655555 3677777777777654
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=8.4e-30 Score=272.42 Aligned_cols=113 Identities=12% Similarity=0.199 Sum_probs=83.8
Q ss_pred cCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEec
Q 039087 260 SKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTV 339 (414)
Q Consensus 260 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 339 (414)
++|++|++++|.+.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 35666666666666666666777777777777777777767777777777888888888777666777777777888888
Q ss_pred ccccCcccchhhhhhcccCcEEEecCCCCCCCC
Q 039087 340 AFNFFSGFSQECARLLIRNVGFDFSANCIPGRD 372 (414)
Q Consensus 340 ~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~ 372 (414)
++|.++.+.+..+..+++|++|++++|.|++++
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence 888777777767777777788888877777654
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=256.95 Aligned_cols=268 Identities=18% Similarity=0.187 Sum_probs=169.1
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCC-CCchhccCCCCCCEE
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSG-PFPLVTLYIPNLVYL 194 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L 194 (414)
.+++++|+|++|++++..|..|..+++|++|+|++|+|+ .+|.. .+++|++|+|++|++++ .+|..|..+++|++|
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence 567889999999988887888888999999999999888 56655 78888999998888886 467888888888888
Q ss_pred ecccccCCC-------------------------CCCchhcc--------------------------------------
Q 039087 195 DLRFNSFSG-------------------------PLPQDLFN-------------------------------------- 211 (414)
Q Consensus 195 ~Ls~N~i~~-------------------------~~p~~~~~-------------------------------------- 211 (414)
++++|.+++ ..|..+..
T Consensus 121 ~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 200 (520)
T 2z7x_B 121 GLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200 (520)
T ss_dssp EEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEEC
T ss_pred EecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccc
Confidence 888887652 11221111
Q ss_pred ----------------------------------------------cccccccccccccccccCccc-------------
Q 039087 212 ----------------------------------------------KKLDAIFVNNNQFSGELPQNL------------- 232 (414)
Q Consensus 212 ----------------------------------------------~~L~~L~l~~n~l~~~~~~~~------------- 232 (414)
.+|++|++++|.+++.+|..+
T Consensus 201 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~ 280 (520)
T 2z7x_B 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280 (520)
T ss_dssp CSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEE
T ss_pred ccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEe
Confidence 035555566666655555443
Q ss_pred -----------------------------------------CCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCc
Q 039087 233 -----------------------------------------GNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQ 271 (414)
Q Consensus 233 -----------------------------------------~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~ 271 (414)
...+|++|++++|++++.+|..+..+ ++|++|++++|+
T Consensus 281 l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~ 359 (520)
T 2z7x_B 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL-TELETLILQMNQ 359 (520)
T ss_dssp EEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCC-SSCCEEECCSSC
T ss_pred ccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccC-CCCCEEEccCCc
Confidence 11234555555555554444444332 555555555555
Q ss_pred Ccc--cCccccCCCCCCCEEEccCCCCCCCCcc-cccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccc
Q 039087 272 LTG--CIPEGVGLFSEMQVFDVSFNSLMGHLPD-TISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFS 348 (414)
Q Consensus 272 l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 348 (414)
+++ .+|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++.+|..+. ++|++|+|++|+|+.++
T Consensus 360 l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip 437 (520)
T 2z7x_B 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIP 437 (520)
T ss_dssp CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCC
T ss_pred cCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccc
Confidence 553 2334455555566666666655543333 245555666666666666544444332 57777777777777554
Q ss_pred hhhhhhcccCcEEEecCCCCCCCCCC-C---CCcccCCCCCCCccc
Q 039087 349 QECARLLIRNVGFDFSANCIPGRDMQ-R---PQPDCSQIPGGGLSC 390 (414)
Q Consensus 349 ~~~~~~~~~L~~L~ls~N~l~~~~~~-~---~~~~~~~l~~~~l~c 390 (414)
...+ .+++|++|++++|+|+.+|.. . +.-....+.++++.|
T Consensus 438 ~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 438 KQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp GGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 4444 777888888888888877654 1 122233444566666
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.5e-29 Score=258.84 Aligned_cols=108 Identities=23% Similarity=0.349 Sum_probs=81.3
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
++++++|+|++|.+++..+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+++ .+|.. .+++|++|+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 357888888888888777778888888888888888888777778888888888888888887 56655 678888888
Q ss_pred cccccCCC-CCCchhcccc-ccccccccccccc
Q 039087 196 LRFNSFSG-PLPQDLFNKK-LDAIFVNNNQFSG 226 (414)
Q Consensus 196 Ls~N~i~~-~~p~~~~~~~-L~~L~l~~n~l~~ 226 (414)
+++|++++ .+|..+.... |++|++++|.++.
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 88888874 2345555544 7777777776653
No 29
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2e-29 Score=240.82 Aligned_cols=246 Identities=22% Similarity=0.211 Sum_probs=212.7
Q ss_pred cEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecc
Q 039087 118 VVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLR 197 (414)
Q Consensus 118 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 197 (414)
+++.++++++.++ .+|..+ .++|++|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5778999999998 455555 3789999999999997778889999999999999999998889999999999999999
Q ss_pred cccCCCCCCchhcccccccccccccccccccCcccCC-CCCCEEEcccCcCCC--CCchhhhhcccCCcEEEccCCcCcc
Q 039087 198 FNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSG--SIPASFGITNSKLKEILFLNNQLTG 274 (414)
Q Consensus 198 ~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~--~~p~~~~~~~~~L~~L~Ls~N~l~~ 274 (414)
+|+++ .+|..++ .+|++|++++|.++...+..+.. .+|++|++++|.++. ..+..+.. + +|++|++++|++++
T Consensus 111 ~n~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-L-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS-C-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC-C-ccCEEECcCCCCCc
Confidence 99998 8888776 67999999999999655555554 679999999999963 44444443 2 89999999999984
Q ss_pred cCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhh
Q 039087 275 CIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARL 354 (414)
Q Consensus 275 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 354 (414)
+|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+|++|+++.+ |..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC-CTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec-Chhhhc
Confidence 666553 7999999999999988888999999999999999999977777899999999999999999955 445778
Q ss_pred cccCcEEEecCCCCCCCCCC
Q 039087 355 LIRNVGFDFSANCIPGRDMQ 374 (414)
Q Consensus 355 ~~~L~~L~ls~N~l~~~~~~ 374 (414)
+++|++|++++|+|++++..
T Consensus 263 l~~L~~L~l~~N~l~~~~~~ 282 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVN 282 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTT
T ss_pred CccCCEEECCCCCCCccChh
Confidence 88999999999999998755
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=7.1e-30 Score=260.15 Aligned_cols=271 Identities=18% Similarity=0.233 Sum_probs=192.9
Q ss_pred CCCCCceeeCCC--------CCCCCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeC
Q 039087 101 VCSYKGIFCSDL--------GAQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDL 172 (414)
Q Consensus 101 ~c~~~gv~c~~~--------~~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 172 (414)
.|.|.++ |+.. ....+++++|+|++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4777777 6432 112468999999999999888889999999999999999999888889999999999999
Q ss_pred cCccCCCCCchhccCCCCCCEEecccccCCC-CCCchhcccc-cccccccccccccccC-cccCC-CCCCEEEcccCcCC
Q 039087 173 SNNQFSGPFPLVTLYIPNLVYLDLRFNSFSG-PLPQDLFNKK-LDAIFVNNNQFSGELP-QNLGN-SPASVINLANNRLS 248 (414)
Q Consensus 173 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~-~~p~~~~~~~-L~~L~l~~n~l~~~~~-~~~~~-~~L~~L~ls~N~l~ 248 (414)
++|++++..|..|..+++|++|++++|.+++ ..|..+.... |++|++++|.+.+.++ ..+.. .+|++|++++|+++
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 9999997777779999999999999999985 3455555544 8888888888544554 34443 45788888888877
Q ss_pred CCCchhhh-----------------------hcccCCcEEEccCCcCcccC--ccc-c----------------------
Q 039087 249 GSIPASFG-----------------------ITNSKLKEILFLNNQLTGCI--PEG-V---------------------- 280 (414)
Q Consensus 249 ~~~p~~~~-----------------------~~~~~L~~L~Ls~N~l~~~~--~~~-~---------------------- 280 (414)
+.+|..+. ..+++|++|++++|++++.. +.. .
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 65554443 23467888888888876521 000 0
Q ss_pred -----------------------------------------------------------------CCCCCCCEEEccCCC
Q 039087 281 -----------------------------------------------------------------GLFSEMQVFDVSFNS 295 (414)
Q Consensus 281 -----------------------------------------------------------------~~l~~L~~L~Ls~N~ 295 (414)
....+|++|++++|.
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 001234555555555
Q ss_pred CCCCCcccc-cCCCCCcEEEcccCCCCCCCch---hhhCCCCCCeEecccccCcccch--hhhhhcccCcEEEecCCCCC
Q 039087 296 LMGHLPDTI-SCMSDIEILNLAHNQLSGELPD---LVCSLRTLMNLTVAFNFFSGFSQ--ECARLLIRNVGFDFSANCIP 369 (414)
Q Consensus 296 l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~L~~N~l~~~~~--~~~~~~~~L~~L~ls~N~l~ 369 (414)
++ .+|..+ ..+++|++|++++|++++.+|. .+..+++|++|+|++|+++++.+ ..+..+++|++|++++|+|+
T Consensus 322 l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 322 VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 54 344443 4577777777777777765543 25667777777777777776643 45666777777777777777
Q ss_pred CCCC
Q 039087 370 GRDM 373 (414)
Q Consensus 370 ~~~~ 373 (414)
.+|.
T Consensus 401 ~lp~ 404 (549)
T 2z81_A 401 PMPD 404 (549)
T ss_dssp CCCS
T ss_pred cCCh
Confidence 6653
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=2.6e-29 Score=259.04 Aligned_cols=132 Identities=15% Similarity=0.090 Sum_probs=102.5
Q ss_pred ccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCC-CCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeE
Q 039087 259 NSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMG-HLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNL 337 (414)
Q Consensus 259 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 337 (414)
+++|++|++++|++.+..|..+..+++|++|++++|.+++ .+|..+..+++|++|+|++|++++..|..+..+++|++|
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 502 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEE
Confidence 3566666666676666666677777778888888887776 367778888889999999999987778888889999999
Q ss_pred ecccccCcccchhhhhhcccCcEEEecCCCCCCCCCCC---C-CcccCCCCCCCccc
Q 039087 338 TVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDMQR---P-QPDCSQIPGGGLSC 390 (414)
Q Consensus 338 ~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~---~-~~~~~~l~~~~l~c 390 (414)
+|++|++++.++..+..+++|++|++++|+|+.+|... + .-....+.++++.|
T Consensus 503 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp ECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred ECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 99999999988888888889999999999999876541 1 12334566677776
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.3e-29 Score=265.58 Aligned_cols=232 Identities=19% Similarity=0.223 Sum_probs=159.1
Q ss_pred ccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCC-CCEEecccccCCCCCCchhcccc-
Q 039087 136 ELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPN-LVYLDLRFNSFSGPLPQDLFNKK- 213 (414)
Q Consensus 136 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~Ls~N~i~~~~p~~~~~~~- 213 (414)
.|..+++|++|+|++|+++ .+| .|.++++|++|+|++|+++ .+|..+..+++ |++|+|++|.++ .+|..+....
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~ 643 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence 3444444444444444444 344 4444444444444444444 44444444555 555555555555 4454433321
Q ss_pred --cccccccccccccccCccc------CCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCC--
Q 039087 214 --LDAIFVNNNQFSGELPQNL------GNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLF-- 283 (414)
Q Consensus 214 --L~~L~l~~n~l~~~~~~~~------~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l-- 283 (414)
|+.|++++|.+.+.+|... ...+|++|++++|+++ .+|..++..+++|++|+|++|+++ .+|..+...
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~ 721 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD 721 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT
T ss_pred CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc
Confidence 5566666666655444222 1135778888888887 788887765689999999999998 666544332
Q ss_pred ------CCCCEEEccCCCCCCCCccccc--CCCCCcEEEcccCCCCCCCchhhhCCCCCCeEeccc------ccCcccch
Q 039087 284 ------SEMQVFDVSFNSLMGHLPDTIS--CMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAF------NFFSGFSQ 349 (414)
Q Consensus 284 ------~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~------N~l~~~~~ 349 (414)
++|++|+|++|+|+ .+|..+. .+++|++|+|++|+|++ +|..+..+++|++|+|++ |++.+.+|
T Consensus 722 ~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip 799 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799 (876)
T ss_dssp SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccCh
Confidence 28999999999998 7888887 89999999999999995 788888999999999976 77888888
Q ss_pred hhhhhcccCcEEEecCCCCCCCCCCC
Q 039087 350 ECARLLIRNVGFDFSANCIPGRDMQR 375 (414)
Q Consensus 350 ~~~~~~~~L~~L~ls~N~l~~~~~~~ 375 (414)
..+..+++|+.|+|++|+|..+|...
T Consensus 800 ~~l~~L~~L~~L~Ls~N~L~~Ip~~l 825 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSNDIRKVDEKL 825 (876)
T ss_dssp TTGGGCSSCCEEECCSSCCCBCCSCC
T ss_pred HHHhcCCCCCEEECCCCCCCccCHhh
Confidence 88888999999999999997766553
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=3.9e-29 Score=255.61 Aligned_cols=268 Identities=18% Similarity=0.214 Sum_probs=172.9
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCC-CCchhccCCCCCCEE
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSG-PFPLVTLYIPNLVYL 194 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L 194 (414)
.+++++|+|++|.+++..+..|..+++|++|+|++|+|+ .+|.. .+++|++|+|++|++++ .+|..|..+++|++|
T Consensus 75 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L 151 (562)
T 3a79_B 75 LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151 (562)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEE
T ss_pred CCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEE
Confidence 567889999999988887888888999999999999888 56655 78888999998888885 345788888888888
Q ss_pred ecccccCCCCCCchhccc--------------------------------------------------------------
Q 039087 195 DLRFNSFSGPLPQDLFNK-------------------------------------------------------------- 212 (414)
Q Consensus 195 ~Ls~N~i~~~~p~~~~~~-------------------------------------------------------------- 212 (414)
++++|++++.....+...
T Consensus 152 ~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 231 (562)
T 3a79_B 152 GLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231 (562)
T ss_dssp EEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECC
T ss_pred ecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccc
Confidence 888888763211111111
Q ss_pred ---------------------------------------------ccccccccccccccccCccc---------------
Q 039087 213 ---------------------------------------------KLDAIFVNNNQFSGELPQNL--------------- 232 (414)
Q Consensus 213 ---------------------------------------------~L~~L~l~~n~l~~~~~~~~--------------- 232 (414)
+|++|++++|.+++.+|..+
T Consensus 232 ~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~ 311 (562)
T 3a79_B 232 DENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311 (562)
T ss_dssp STTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEE
T ss_pred ccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhh
Confidence 34455555555555554433
Q ss_pred --------------------------------------C-CCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCc
Q 039087 233 --------------------------------------G-NSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLT 273 (414)
Q Consensus 233 --------------------------------------~-~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~ 273 (414)
. ..+|++|++++|++++.+|..+..+ ++|++|++++|+++
T Consensus 312 ~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~ 390 (562)
T 3a79_B 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL-KRLQTLILQRNGLK 390 (562)
T ss_dssp EEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSC-SSCCEEECCSSCCC
T ss_pred cccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhccc-CCCCEEECCCCCcC
Confidence 1 1345666666666665555555443 56666666666665
Q ss_pred cc--CccccCCCCCCCEEEccCCCCCCCCcc-cccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchh
Q 039087 274 GC--IPEGVGLFSEMQVFDVSFNSLMGHLPD-TISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQE 350 (414)
Q Consensus 274 ~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 350 (414)
+. +|..+..+++|++|++++|++++.+|. .+..+++|++|++++|++++.+|..+. ++|++|+|++|+|+.+++.
T Consensus 391 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~ 468 (562)
T 3a79_B 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKD 468 (562)
T ss_dssp BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTT
T ss_pred CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChh
Confidence 42 234456666666666666666653333 355666666666666666654444332 5778888888888765555
Q ss_pred hhhhcccCcEEEecCCCCCCCCCC-C---CCcccCCCCCCCccc
Q 039087 351 CARLLIRNVGFDFSANCIPGRDMQ-R---PQPDCSQIPGGGLSC 390 (414)
Q Consensus 351 ~~~~~~~L~~L~ls~N~l~~~~~~-~---~~~~~~~l~~~~l~c 390 (414)
.+ .+++|++|++++|+|+++|.. . +.-....+.++++.|
T Consensus 469 ~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 469 VT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp TT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred hc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 54 677888888888888877654 1 122223344455555
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=3.6e-29 Score=248.28 Aligned_cols=225 Identities=20% Similarity=0.228 Sum_probs=121.6
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEec
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDL 196 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 196 (414)
..++.|+|++|+++...+..|.++++|++|+|++|+|+...+..|.++++|++|+|++|+++...+..|..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45666777777766666666666777777777777766555566666677777777777766444455666667777777
Q ss_pred ccccCCCCCCc-hhccc-ccccccccccccccccCc-ccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcC
Q 039087 197 RFNSFSGPLPQ-DLFNK-KLDAIFVNNNQFSGELPQ-NLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQL 272 (414)
Q Consensus 197 s~N~i~~~~p~-~~~~~-~L~~L~l~~n~l~~~~~~-~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l 272 (414)
++|.++ .++. .+... +|++|++++|+....++. .+.. .+|++|++++|+++ .+|. +.. +++|++|+|++|++
T Consensus 144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~-l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTP-LIKLDELDLSGNHL 219 (440)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTT-CSSCCEEECTTSCC
T ss_pred CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCC-CcccCEEECCCCcc
Confidence 777666 3333 22222 255555555332223332 2222 33555555555554 3432 222 24555555555555
Q ss_pred cccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCc
Q 039087 273 TGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFS 345 (414)
Q Consensus 273 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 345 (414)
++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|.+.
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 5444445555555555555555555444444555555555555555555333344444555555555555443
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=3.3e-29 Score=257.97 Aligned_cols=247 Identities=17% Similarity=0.144 Sum_probs=194.9
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEec
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDL 196 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 196 (414)
++++.|+|++|.+.+..+..|..+++|++|+|++|.|++..|..|.++++|++|+|++|.++...+..|..+++|++|+|
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 56788888888888777777888888888888888888766777778888888888888888555555677888888888
Q ss_pred ccccCCCCCCchhcccc-cccccccccccccccCcccC--------------------------------------CCCC
Q 039087 197 RFNSFSGPLPQDLFNKK-LDAIFVNNNQFSGELPQNLG--------------------------------------NSPA 237 (414)
Q Consensus 197 s~N~i~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~--------------------------------------~~~L 237 (414)
++|.+++..|..+.... |++|++++|.+++.....+. ..+|
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L 234 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 234 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCC
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCC
Confidence 88888755555555543 77777777777643211110 1246
Q ss_pred CEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccc
Q 039087 238 SVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAH 317 (414)
Q Consensus 238 ~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 317 (414)
++|++++|.+++ +..+.. +++|++|+|++|.+++..|..|..+++|++|+|++|.+++ +|..+..+++|++|+|++
T Consensus 235 ~~L~L~~n~l~~--~~~l~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 235 TILKLQHNNLTD--TAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp CEEECCSSCCCC--CGGGGG-CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCS
T ss_pred CEEECCCCCCCC--Chhhcc-CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCC
Confidence 777777777774 344554 4899999999999998889999999999999999999984 677778899999999999
Q ss_pred CCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCC
Q 039087 318 NQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 318 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~ 371 (414)
|.++ .+|..+..+++|++|+|++|.|++.. +..+++|+.|++++|++++.
T Consensus 311 N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 311 NHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 9999 78888899999999999999999875 45567899999999999754
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=3.7e-29 Score=257.93 Aligned_cols=112 Identities=20% Similarity=0.155 Sum_probs=68.7
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
.+++++|+|++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|.+++..+..+..+++|++|+
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 34566666666666655555566666666666666666655566666666666666666666654445566666666666
Q ss_pred cccccCCC-CCCchhcccc-cccccccccccccc
Q 039087 196 LRFNSFSG-PLPQDLFNKK-LDAIFVNNNQFSGE 227 (414)
Q Consensus 196 Ls~N~i~~-~~p~~~~~~~-L~~L~l~~n~l~~~ 227 (414)
+++|.+++ .+|..+.... |++|++++|.+++.
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 66666653 4566665544 77777777766543
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.5e-28 Score=239.82 Aligned_cols=244 Identities=16% Similarity=0.138 Sum_probs=162.9
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEec
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDL 196 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 196 (414)
+++++|+|++|.+.+..+..|..+++|++|+|++|+++...+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 93 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence 34555555555555444444555555555555555555222222444555555555555555444444555555555555
Q ss_pred ccccCCCCCCchhc-c-----------------cccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhc
Q 039087 197 RFNSFSGPLPQDLF-N-----------------KKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGIT 258 (414)
Q Consensus 197 s~N~i~~~~p~~~~-~-----------------~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~ 258 (414)
++|++++ ++.... . ..|++|++++|.+.. ++... ..+|++|++++|.+++ . ..+..
T Consensus 173 ~~n~l~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~-~~~~~-~~~L~~L~l~~n~l~~-~-~~l~~- 246 (390)
T 3o6n_A 173 SSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV-VRGPV-NVELTILKLQHNNLTD-T-AWLLN- 246 (390)
T ss_dssp CSSCCSB-CCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCE-EECCC-CSSCCEEECCSSCCCC-C-GGGGG-
T ss_pred CCCcCCc-cccccccccceeecccccccccCCCCcceEEECCCCeeee-ccccc-cccccEEECCCCCCcc-c-HHHcC-
Confidence 5555542 111100 0 113333333333331 11111 2468999999999984 3 34544
Q ss_pred ccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEe
Q 039087 259 NSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLT 338 (414)
Q Consensus 259 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 338 (414)
+++|++|++++|.+++..|..|..+++|++|+|++|+++ .++..+..+++|++|+|++|+++ .+|..+..+++|++|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEE
Confidence 489999999999999888999999999999999999998 46777788999999999999999 7788888899999999
Q ss_pred cccccCcccchhhhhhcccCcEEEecCCCCCCC
Q 039087 339 VAFNFFSGFSQECARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 339 L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~ 371 (414)
|++|.|+.+. +..+++|++|++++|++++.
T Consensus 325 L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 325 LDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCccceeC---chhhccCCEEEcCCCCccch
Confidence 9999999875 55677899999999999864
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=2.4e-28 Score=255.26 Aligned_cols=248 Identities=19% Similarity=0.190 Sum_probs=166.3
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
++++++|+|++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|.++...+..|..+++|++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 46788999999998887777888889999999999988887788888888899999988888855555688888888888
Q ss_pred cccccCCCCCCchhcccc-cccccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhhhh-cccCCcEEEccCCcC
Q 039087 196 LRFNSFSGPLPQDLFNKK-LDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFGI-TNSKLKEILFLNNQL 272 (414)
Q Consensus 196 Ls~N~i~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~-~~~~L~~L~Ls~N~l 272 (414)
+++|++++..|..+.... |++|++++|.+++..+..+.. .+|++|++++|.+++..+..+.. ..++|++|++++|++
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 888888854445565544 888888888888766666644 46888888888887544444321 125677777777777
Q ss_pred cccCccccCCC---------------------------CCCCEEEccCCCCCCCCcccccCCCC--CcEEEcccCCCCCC
Q 039087 273 TGCIPEGVGLF---------------------------SEMQVFDVSFNSLMGHLPDTISCMSD--IEILNLAHNQLSGE 323 (414)
Q Consensus 273 ~~~~~~~~~~l---------------------------~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~ 323 (414)
++..+..|..+ ++|++|++++|.+++..|..|..++. |++|++++|++++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 65555444322 34455555555555555555544432 55555555555544
Q ss_pred CchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEe
Q 039087 324 LPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDF 363 (414)
Q Consensus 324 ~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~l 363 (414)
.|..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEEC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEec
Confidence 4455555555555555555555544443333333333333
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=9.8e-29 Score=251.72 Aligned_cols=109 Identities=16% Similarity=0.196 Sum_probs=64.5
Q ss_pred CEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCc---cccCCCCCCCEEEccCCCCCCCCc--ccccCCCCCcE
Q 039087 238 SVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIP---EGVGLFSEMQVFDVSFNSLMGHLP--DTISCMSDIEI 312 (414)
Q Consensus 238 ~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~ 312 (414)
++|++++|++. .+|..++..+++|++|++++|++++.+| ..+..+++|++|++++|++++..+ ..+..+++|++
T Consensus 313 ~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~ 391 (549)
T 2z81_A 313 KRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391 (549)
T ss_dssp CEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCE
T ss_pred eEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCE
Confidence 33334444433 3444444334667777777777765443 235566677777777777664321 34666677777
Q ss_pred EEcccCCCCCCCchhhhCCCCCCeEecccccCcccc
Q 039087 313 LNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFS 348 (414)
Q Consensus 313 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 348 (414)
|++++|+++ .+|..+..+++|++|++++|.|+.+.
T Consensus 392 L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~ 426 (549)
T 2z81_A 392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVK 426 (549)
T ss_dssp EECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCC
T ss_pred EECCCCCCc-cCChhhcccccccEEECCCCCccccc
Confidence 777777776 56666666666666666666666443
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=6.6e-28 Score=257.78 Aligned_cols=253 Identities=18% Similarity=0.160 Sum_probs=199.8
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccc--cCCCCCCCEEeCcCccCCCCCc-hhccCCCCCC
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPET--FKDLTSLQELDLSNNQFSGPFP-LVTLYIPNLV 192 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~ 192 (414)
.++++.|+|++|.+.+..|..|..+++|++|+|++|.+++.++.. |.++++|++|+|++|.+++..+ ..|.++++|+
T Consensus 72 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp CTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred CCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 567888999999988888888888999999999999888766654 8888999999999998886654 5788899999
Q ss_pred EEecccccCCCCCCchhcc---cc------------------------------cccccccccccccccCcccC------
Q 039087 193 YLDLRFNSFSGPLPQDLFN---KK------------------------------LDAIFVNNNQFSGELPQNLG------ 233 (414)
Q Consensus 193 ~L~Ls~N~i~~~~p~~~~~---~~------------------------------L~~L~l~~n~l~~~~~~~~~------ 233 (414)
+|+|++|.+++..+..+.. .+ |+.|++++|.+++.++..+.
T Consensus 152 ~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231 (844)
T ss_dssp EEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred EEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence 9999999887666655433 12 44555555544332222111
Q ss_pred ---------------------------------CCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCcccc
Q 039087 234 ---------------------------------NSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGV 280 (414)
Q Consensus 234 ---------------------------------~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~ 280 (414)
..++++|++++|.+.+..+..+.. +++|++|++++|++++..+..|
T Consensus 232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET-LKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS-CCCCCEEEEESCCCCEECTTTT
T ss_pred cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc-CCCCCEEECCCCcCCCCChHHh
Confidence 134677777777777544444444 5899999999999998888899
Q ss_pred CCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcE
Q 039087 281 GLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVG 360 (414)
Q Consensus 281 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~ 360 (414)
..+++|++|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|.++++.. +++|+.
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~~L~~ 385 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIPD 385 (844)
T ss_dssp TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-----CCSCSE
T ss_pred cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC-----CCCcch
Confidence 999999999999999998889999999999999999999997777789999999999999999987643 567888
Q ss_pred EEecCCCCCCCCCC
Q 039087 361 FDFSANCIPGRDMQ 374 (414)
Q Consensus 361 L~ls~N~l~~~~~~ 374 (414)
|++++|+++.++..
T Consensus 386 L~l~~N~l~~l~~~ 399 (844)
T 3j0a_A 386 IFLSGNKLVTLPKI 399 (844)
T ss_dssp EEEESCCCCCCCCC
T ss_pred hccCCCCccccccc
Confidence 88888888876544
No 41
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3e-28 Score=242.45 Aligned_cols=244 Identities=17% Similarity=0.150 Sum_probs=208.7
Q ss_pred EEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccC
Q 039087 122 IDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSF 201 (414)
Q Consensus 122 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i 201 (414)
++.++.+++ .+|..+. +++++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|++
T Consensus 59 v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 59 VVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 334444555 3444443 6899999999999988889999999999999999999988889999999999999999999
Q ss_pred CCCCCch-hccc-ccccccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCcc
Q 039087 202 SGPLPQD-LFNK-KLDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPE 278 (414)
Q Consensus 202 ~~~~p~~-~~~~-~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~ 278 (414)
+ .+|.. +... +|++|++++|.++...+..+.. .+|++|++++|+..+.++...+..+++|++|++++|++++ +|
T Consensus 136 ~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~- 212 (452)
T 3zyi_A 136 T-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP- 212 (452)
T ss_dssp S-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-
T ss_pred C-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-
Confidence 9 55554 4444 4999999999999554445544 6799999999655547777655556999999999999984 44
Q ss_pred ccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccC
Q 039087 279 GVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRN 358 (414)
Q Consensus 279 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L 358 (414)
.+..+++|++|+|++|.|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|+++++..+..+++|
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 58889999999999999998889999999999999999999998888899999999999999999999999989999999
Q ss_pred cEEEecCCCCCCC
Q 039087 359 VGFDFSANCIPGR 371 (414)
Q Consensus 359 ~~L~ls~N~l~~~ 371 (414)
+.|+|++|++...
T Consensus 293 ~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 293 VELHLHHNPWNCD 305 (452)
T ss_dssp CEEECCSSCEECS
T ss_pred CEEEccCCCcCCC
Confidence 9999999998754
No 42
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=4.8e-28 Score=240.19 Aligned_cols=244 Identities=18% Similarity=0.180 Sum_probs=209.7
Q ss_pred EEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEeccccc
Q 039087 121 GIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNS 200 (414)
Q Consensus 121 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 200 (414)
.++.++.+++ .+|..+. ++++.|+|++|+|+...+..|.++++|++|+|++|.++...+..|..+++|++|+|++|+
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 3444455565 4455443 689999999999998888899999999999999999997778899999999999999999
Q ss_pred CCCCCCc-hhcccc-cccccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCc
Q 039087 201 FSGPLPQ-DLFNKK-LDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIP 277 (414)
Q Consensus 201 i~~~~p~-~~~~~~-L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~ 277 (414)
++ .++. .+.... |++|++++|.++...+..+.. .+|++|++++|+..+.++...+..+++|++|++++|+++ .+|
T Consensus 124 l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred CC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence 99 5555 454544 999999999999555545554 679999999966554777765555699999999999998 555
Q ss_pred cccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhccc
Q 039087 278 EGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIR 357 (414)
Q Consensus 278 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 357 (414)
.+..+++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|+.+++..+..+++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 4888999999999999999888999999999999999999999888889999999999999999999999999999999
Q ss_pred CcEEEecCCCCCC
Q 039087 358 NVGFDFSANCIPG 370 (414)
Q Consensus 358 L~~L~ls~N~l~~ 370 (414)
|+.|+|++|++..
T Consensus 281 L~~L~L~~Np~~C 293 (440)
T 3zyj_A 281 LERIHLHHNPWNC 293 (440)
T ss_dssp CCEEECCSSCEEC
T ss_pred CCEEEcCCCCccC
Confidence 9999999999865
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1.2e-27 Score=250.07 Aligned_cols=255 Identities=19% Similarity=0.208 Sum_probs=136.0
Q ss_pred cEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCC---------------------------------C
Q 039087 118 VVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKD---------------------------------L 164 (414)
Q Consensus 118 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~---------------------------------l 164 (414)
+++.|+|++|.+.+..+..|..+++|++|++++|++++..|..|.. +
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 3677777777777666666777777777777777766555544444 4
Q ss_pred CCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCC-CCCchhcc----cccccccccccccccccCcccCC-CCCC
Q 039087 165 TSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSG-PLPQDLFN----KKLDAIFVNNNQFSGELPQNLGN-SPAS 238 (414)
Q Consensus 165 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~-~~p~~~~~----~~L~~L~l~~n~l~~~~~~~~~~-~~L~ 238 (414)
++|++|++++|.+++..+..|..+++|++|++++|.+.. .++...+. .+|+.|++++|++++..|..+.. .+|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 445555555555554445555555555555555554321 11111111 23666666666666555555544 4577
Q ss_pred EEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccc--------------------------cCCCCCCCEEEcc
Q 039087 239 VINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEG--------------------------VGLFSEMQVFDVS 292 (414)
Q Consensus 239 ~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~--------------------------~~~l~~L~~L~Ls 292 (414)
+|++++|.+.+.+|...+..+++|++|++++|++.+..+.. |..+++|++|+++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence 77777777765565433333466777777666655443444 4444444444444
Q ss_pred CCCCCCCCcccccCCCCCcEEEcccCCCCCCCc--------hhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEec
Q 039087 293 FNSLMGHLPDTISCMSDIEILNLAHNQLSGELP--------DLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFS 364 (414)
Q Consensus 293 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--------~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls 364 (414)
+|++++..+..|..+++|++|++++|++++..+ ..+..+++|++|+|++|+|+.+++..+..+++|++|+++
T Consensus 489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence 444444444444444445555555554442110 113444455555555555554444444555555555555
Q ss_pred CCCCCCCC
Q 039087 365 ANCIPGRD 372 (414)
Q Consensus 365 ~N~l~~~~ 372 (414)
+|+|++++
T Consensus 569 ~N~l~~l~ 576 (680)
T 1ziw_A 569 LNNLNTLP 576 (680)
T ss_dssp SSCCCCCC
T ss_pred CCCCCcCC
Confidence 55555443
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=6.8e-29 Score=234.26 Aligned_cols=267 Identities=18% Similarity=0.202 Sum_probs=219.0
Q ss_pred CCCCCceeeCCCC------CCCCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCcc--CccccCCCCCCCEEeC
Q 039087 101 VCSYKGIFCSDLG------AQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGT--VPETFKDLTSLQELDL 172 (414)
Q Consensus 101 ~c~~~gv~c~~~~------~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L 172 (414)
.|.|.++.|...+ ..++++++|+|++|+++...+..|..+++|++|+|++|+++.. .+..+..+++|++|+|
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 4789999997642 2346899999999999976666689999999999999999833 3566778999999999
Q ss_pred cCccCCCCCchhccCCCCCCEEecccccCCCCCC-chhccc-ccccccccccccccccCcccCC-CCCCEEEcccCcCCC
Q 039087 173 SNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLP-QDLFNK-KLDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSG 249 (414)
Q Consensus 173 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p-~~~~~~-~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~ 249 (414)
++|.++ .+|..+..+++|++|++++|++++..+ ..+... +|++|++++|.+.+..+..+.. .+|++|++++|.+.+
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 999999 678889999999999999999984433 344444 4999999999999877777765 679999999999986
Q ss_pred -CCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhh
Q 039087 250 -SIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLV 328 (414)
Q Consensus 250 -~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 328 (414)
.+|..+.. +++|++|++++|++++..|..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+
T Consensus 165 ~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 165 NFLPDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred ccchhHHhh-CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 46666655 4899999999999998888999999999999999999998777789999999999999999998888888
Q ss_pred hCCC-CCCeEecccccCcccch--hhhhhcccCcEEEecCCCCC
Q 039087 329 CSLR-TLMNLTVAFNFFSGFSQ--ECARLLIRNVGFDFSANCIP 369 (414)
Q Consensus 329 ~~l~-~L~~L~L~~N~l~~~~~--~~~~~~~~L~~L~ls~N~l~ 369 (414)
..++ +|++|+|++|.++.... .+...+...+.+.+..+.+.
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~ 287 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 287 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCB
T ss_pred HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccc
Confidence 8884 99999999999987532 23333333333444444433
No 45
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=9.3e-28 Score=222.57 Aligned_cols=219 Identities=21% Similarity=0.243 Sum_probs=163.7
Q ss_pred CCCCCCCceeeCCCCCCCCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCC
Q 039087 99 DNVCSYKGIFCSDLGAQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFS 178 (414)
Q Consensus 99 ~~~c~~~gv~c~~~~~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 178 (414)
.+.|.|.|+.|.. ...++.+++++++++. +|..+. +++++|+|++|+++...+..|.++++|++|+|++|.++
T Consensus 2 ~~~C~~~~~~C~c----~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 74 (270)
T 2o6q_A 2 EALCKKDGGVCSC----NNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74 (270)
T ss_dssp CCCBGGGTCSBEE----ETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS
T ss_pred CccCCCCCCCCEe----CCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC
Confidence 4789999999865 3356789999999985 555443 67999999999999766678999999999999999998
Q ss_pred CCCchhccCCCCCCEEecccccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhc
Q 039087 179 GPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGIT 258 (414)
Q Consensus 179 ~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~ 258 (414)
...+..|..+++|++|++++|+++ .+|...+. ...+|++|++++|+++ .++...+..
T Consensus 75 ~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~---------------------~l~~L~~L~l~~n~l~-~~~~~~~~~ 131 (270)
T 2o6q_A 75 TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFD---------------------QLVNLAELRLDRNQLK-SLPPRVFDS 131 (270)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTT---------------------TCSSCCEEECCSSCCC-CCCTTTTTT
T ss_pred eeChhhhcCCCCCCEEECCCCcCC-cCCHhHcc---------------------cccCCCEEECCCCccC-eeCHHHhCc
Confidence 665666788999999999999887 33322110 1235677777777777 333333333
Q ss_pred ccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEe
Q 039087 259 NSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLT 338 (414)
Q Consensus 259 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 338 (414)
+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|+|++..+..+..+++|++|+
T Consensus 132 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEE
Confidence 47888888888888865555677888888888888888866666777888888888888888855555677788888888
Q ss_pred cccccCccc
Q 039087 339 VAFNFFSGF 347 (414)
Q Consensus 339 L~~N~l~~~ 347 (414)
|++|.+...
T Consensus 212 l~~N~~~c~ 220 (270)
T 2o6q_A 212 LQENPWDCT 220 (270)
T ss_dssp CCSSCBCCS
T ss_pred ecCCCeeCC
Confidence 888887654
No 46
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=1.1e-30 Score=247.39 Aligned_cols=246 Identities=17% Similarity=0.169 Sum_probs=202.1
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCC-ccCccccC-------CCCCCCEEeCcCccCCCCCchhc--
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFS-GTVPETFK-------DLTSLQELDLSNNQFSGPFPLVT-- 185 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~-- 185 (414)
..+++.|++++|.+ .+|..+... |+.|+|++|+++ ..+|..+. ++++|++|+|++|++++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 35678889999999 566655544 889999999994 45666554 78999999999999998888876
Q ss_pred cCCCCCCEEecccccCCCCCCchhcc------cccccccccccccccccCcccCC-CCCCEEEcccCcCCCCC--chhh-
Q 039087 186 LYIPNLVYLDLRFNSFSGPLPQDLFN------KKLDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSI--PASF- 255 (414)
Q Consensus 186 ~~l~~L~~L~Ls~N~i~~~~p~~~~~------~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~--p~~~- 255 (414)
..+++|++|++++|++++. |..+.. .+|++|++++|.+++..+..+.. .+|++|++++|++.+.+ +..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 8899999999999999955 766654 35999999999999777677765 56999999999987542 3333
Q ss_pred hhcccCCcEEEccCCcCcc--cCc-cccCCCCCCCEEEccCCCCCCCCc-ccccCCCCCcEEEcccCCCCCCCchhhhCC
Q 039087 256 GITNSKLKEILFLNNQLTG--CIP-EGVGLFSEMQVFDVSFNSLMGHLP-DTISCMSDIEILNLAHNQLSGELPDLVCSL 331 (414)
Q Consensus 256 ~~~~~~L~~L~Ls~N~l~~--~~~-~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 331 (414)
+..+++|++|++++|++++ .++ ..+..+++|++|++++|++++..| ..+..+++|++|+|++|+|+ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 1335899999999999983 122 445678999999999999998775 55677899999999999999 8888775
Q ss_pred CCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCC
Q 039087 332 RTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 332 ~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~ 371 (414)
++|++|+|++|+|++. |. +..+++|++|++++|+|++.
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 8999999999999988 44 77888999999999999875
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.1e-27 Score=223.81 Aligned_cols=224 Identities=17% Similarity=0.149 Sum_probs=155.1
Q ss_pred EEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccc
Q 039087 120 AGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFN 199 (414)
Q Consensus 120 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 199 (414)
+.++.+++.++.. |.. ..++|++|+|++|+++...+..|..+++|++|+|++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~i-p~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSC-CTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccC-CcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 4566666677643 332 2467888888888888666667788888888888888888666777888888888888888
Q ss_pred c-CCCCCCchhcccc-cccccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccC
Q 039087 200 S-FSGPLPQDLFNKK-LDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCI 276 (414)
Q Consensus 200 ~-i~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~ 276 (414)
. ++...|..+.... |++|++++|.+++..+..+.. .+|++|++++|+++ .++...+..+++|++|++++|++++..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccC
Confidence 6 6533344444433 666666666666554555543 45777777777777 444332223467777777777777555
Q ss_pred ccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCccc
Q 039087 277 PEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGF 347 (414)
Q Consensus 277 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 347 (414)
+..|..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|+|++|.+...
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 55677777777777777777776677777777777777777777765556677777777777777777654
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.9e-29 Score=238.23 Aligned_cols=242 Identities=19% Similarity=0.224 Sum_probs=185.5
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEec
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDL 196 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 196 (414)
+++++|+|++|.+++..+..|..+++|++|+|++|++++..+ |..+++|++|++++|++++ ++ ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEEC
Confidence 468888999888888777888888889999999888885443 8888889999998888873 23 3478888999
Q ss_pred ccccCCCCCCchhcccccccccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCccc
Q 039087 197 RFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGC 275 (414)
Q Consensus 197 s~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~ 275 (414)
++|++++ ++... ..+|++|++++|.+++..+..+.. .+|++|++++|.+++..+..+...+++|++|++++|.+++.
T Consensus 107 ~~n~l~~-~~~~~-~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 107 ANNNISR-VSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp CSSCCSE-EEECC-CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCCccCC-cCccc-cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence 9888874 33322 234888888888888665555544 56888899988888655666654457888999998888744
Q ss_pred CccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCc-ccchhhhhh
Q 039087 276 IPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFS-GFSQECARL 354 (414)
Q Consensus 276 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~ 354 (414)
+ ....+++|++|+|++|++++ +|..+..+++|++|+|++|+|+ .+|..+..+++|++|++++|.+. +..+..+..
T Consensus 185 -~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 185 -K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp -E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred -c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 3 23357888999999988884 4555888888899999999888 67777888888899999999888 666777777
Q ss_pred cccCcEEEec-CCCCCCC
Q 039087 355 LIRNVGFDFS-ANCIPGR 371 (414)
Q Consensus 355 ~~~L~~L~ls-~N~l~~~ 371 (414)
+++|+.++++ .+.+++.
T Consensus 261 ~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 261 NQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CHHHHHHHHHHHHHHHSS
T ss_pred cccceEEECCCchhccCC
Confidence 7788888888 4455554
No 49
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.8e-26 Score=221.36 Aligned_cols=241 Identities=20% Similarity=0.235 Sum_probs=162.2
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
.+++++|++++|.+++..+ +..+++|++|++++|.++. ++ .|.++++|++|++++|.+++. +. +..+++|++|+
T Consensus 65 ~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLN 138 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEE
T ss_pred cCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEE
Confidence 4567778888777775433 7777777777777777763 33 577777777777777777733 33 56666666666
Q ss_pred cccccCCCCCCchhcc-cc----------------------cccccccccccccccCcccCCCCCCEEEcccCcCCCCCc
Q 039087 196 LRFNSFSGPLPQDLFN-KK----------------------LDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIP 252 (414)
Q Consensus 196 Ls~N~i~~~~p~~~~~-~~----------------------L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p 252 (414)
+++|.....++. +.. .+ |++|++++|.+.+ ++......+|++|++++|.+.+ ++
T Consensus 139 l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~-~~ 215 (347)
T 4fmz_A 139 LGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED-ISPLASLTSLHYFTAYVNQITD-IT 215 (347)
T ss_dssp CTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCC-CG
T ss_pred CCCCCCcccccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccc-cccccCCCccceeecccCCCCC-Cc
Confidence 666644423332 222 22 4445555554442 2222222345555555555552 22
Q ss_pred hhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCC
Q 039087 253 ASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLR 332 (414)
Q Consensus 253 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 332 (414)
. +.. +++|++|++++|++++. +. +..+++|++|++++|.+++. ..+..+++|++|++++|++++ + ..+..++
T Consensus 216 ~-~~~-~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~ 287 (347)
T 4fmz_A 216 P-VAN-MTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLS 287 (347)
T ss_dssp G-GGG-CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCT
T ss_pred h-hhc-CCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCC
Confidence 2 333 47788888888888743 33 77888888888888888743 457788888888888888884 4 3577888
Q ss_pred CCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCCC
Q 039087 333 TLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDM 373 (414)
Q Consensus 333 ~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~ 373 (414)
+|++|++++|.+++..+..+..+++|++|++++|++++.+.
T Consensus 288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 89999999999888888888888889999999999888753
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.9e-27 Score=220.87 Aligned_cols=225 Identities=16% Similarity=0.090 Sum_probs=196.7
Q ss_pred CCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccc-cccccccc
Q 039087 143 VNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKK-LDAIFVNN 221 (414)
Q Consensus 143 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~l~~ 221 (414)
-+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.... |++|++++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 368999999998 667654 47999999999999977778899999999999999999966577776655 99999999
Q ss_pred cc-cccccCcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCC
Q 039087 222 NQ-FSGELPQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGH 299 (414)
Q Consensus 222 n~-l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 299 (414)
|. +....+..+.. .+|++|++++|.+++..+..+.. +++|++|++++|++++..+..|..+++|++|++++|++++.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG-LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhC-CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 97 77555666655 57999999999999555555554 48999999999999976667799999999999999999977
Q ss_pred CcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCC
Q 039087 300 LPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 300 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~ 371 (414)
.+..|..+++|++|++++|.+++..|..+..+++|++|++++|.++++++..+..+++|++|++++|+++..
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 777799999999999999999988899999999999999999999999988899999999999999999864
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.6e-28 Score=233.07 Aligned_cols=240 Identities=17% Similarity=0.151 Sum_probs=203.2
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEec
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDL 196 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 196 (414)
.+++..+++.+.+...+...+..+++|++|+|++|++++..|..|.++++|++|+|++|.+++..+ +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 457888999998876666667788899999999999998778899999999999999999986554 889999999999
Q ss_pred ccccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccC
Q 039087 197 RFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCI 276 (414)
Q Consensus 197 s~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~ 276 (414)
++|.++ .++.. .+|++|++++|.+++..+.. ..+|++|++++|++++..+..+.. +++|++|++++|++++..
T Consensus 88 s~n~l~-~l~~~---~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 88 NNNYVQ-ELLVG---PSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp CSSEEE-EEEEC---TTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGG-GSSEEEEECTTSCCCEEE
T ss_pred cCCccc-cccCC---CCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhc-cCCCCEEECCCCCCCccc
Confidence 999998 44422 56999999999999665544 356999999999999544545554 489999999999999776
Q ss_pred cccc-CCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhc
Q 039087 277 PEGV-GLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLL 355 (414)
Q Consensus 277 ~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~ 355 (414)
+..+ ..+++|++|++++|.+++. +. ...+++|++|+|++|+|+ .+|..+..+++|++|+|++|.|+.++ ..+..+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIE-KALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEEC-TTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchh-hHhhcC
Confidence 6666 4789999999999999854 33 345899999999999999 56666889999999999999999764 456778
Q ss_pred ccCcEEEecCCCCC
Q 039087 356 IRNVGFDFSANCIP 369 (414)
Q Consensus 356 ~~L~~L~ls~N~l~ 369 (414)
++|+.|++++|+++
T Consensus 237 ~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 237 QNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCEEECTTCCCB
T ss_pred CCCCEEEccCCCcc
Confidence 89999999999998
No 52
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.6e-26 Score=221.75 Aligned_cols=239 Identities=19% Similarity=0.282 Sum_probs=177.9
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCc---------------------cccCCCCCCCEEeCcC
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVP---------------------ETFKDLTSLQELDLSN 174 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p---------------------~~~~~l~~L~~L~Ls~ 174 (414)
.+++++|++++|.++.. +.+..+++|++|++++|++++..+ ..+..+++|++|++++
T Consensus 87 l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~ 164 (347)
T 4fmz_A 87 LVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE 164 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCS
T ss_pred CCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecC
Confidence 45666666666666543 346666666666666666653211 1244455555555555
Q ss_pred ccCCCCCchhccCCCCCCEEecccccCCCCCCchhcc-cccccccccccccccccCcccCCCCCCEEEcccCcCCCCCch
Q 039087 175 NQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFN-KKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPA 253 (414)
Q Consensus 175 N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~ 253 (414)
|.+.+..+ +..+++|++|++++|.+. .++. +.. .+|+.|++++|.+++..+ .....+|++|++++|+++ .++.
T Consensus 165 ~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~-~~~~ 238 (347)
T 4fmz_A 165 SKVKDVTP--IANLTDLYSLSLNYNQIE-DISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKIT-DLSP 238 (347)
T ss_dssp SCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCGG
T ss_pred CCcCCchh--hccCCCCCEEEccCCccc-cccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccC-CCcc
Confidence 55553322 666778888888888887 4444 333 449999999999985443 334467999999999999 5555
Q ss_pred hhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCC
Q 039087 254 SFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRT 333 (414)
Q Consensus 254 ~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 333 (414)
+.. +++|++|++++|.+++ + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 239 -~~~-l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 239 -LAN-LSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp -GTT-CTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred -hhc-CCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 444 5899999999999985 3 5688999999999999999854 46888999999999999999888899999999
Q ss_pred CCeEecccccCcccchhhhhhcccCcEEEecCCCCCC
Q 039087 334 LMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPG 370 (414)
Q Consensus 334 L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~ 370 (414)
|++|++++|.+++..+ +..+++|++|++++|+|+.
T Consensus 313 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347 (347)
T ss_dssp CSEEECCSSSCCCCGG--GGGCTTCSEESSSCC----
T ss_pred CCEEEccCCccccccC--hhhhhccceeehhhhcccC
Confidence 9999999999999877 7778899999999999863
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=6.4e-27 Score=241.72 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=102.4
Q ss_pred ccCCcEEEccCCcCc-ccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeE
Q 039087 259 NSKLKEILFLNNQLT-GCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNL 337 (414)
Q Consensus 259 ~~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 337 (414)
.+.+++|++++|++. ...|..|..+++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|
T Consensus 468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE
T ss_pred chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE
Confidence 357888999998754 4567889999999999999999999899999999999999999999998888889999999999
Q ss_pred ecccccCcccchhhhhhc-ccCcEEEecCCCCCCC
Q 039087 338 TVAFNFFSGFSQECARLL-IRNVGFDFSANCIPGR 371 (414)
Q Consensus 338 ~L~~N~l~~~~~~~~~~~-~~L~~L~ls~N~l~~~ 371 (414)
+|++|+|++++++.+..+ ++|++|++++|+++..
T Consensus 548 ~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp ECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred ECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 999999999999888776 6899999999999873
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=7e-27 Score=225.05 Aligned_cols=264 Identities=15% Similarity=0.117 Sum_probs=210.6
Q ss_pred EEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccC
Q 039087 122 IDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSF 201 (414)
Q Consensus 122 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i 201 (414)
.|+++++++. +|..+. ++|++|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|++
T Consensus 36 c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 8999999984 455444 5899999999999976666899999999999999999987788899999999999999999
Q ss_pred CCCCCch-hccc-ccccccccccccccccCc--ccCC-CCCCEEEcccCc-CCCCCchhhhhcccCCcEEEccCCcCccc
Q 039087 202 SGPLPQD-LFNK-KLDAIFVNNNQFSGELPQ--NLGN-SPASVINLANNR-LSGSIPASFGITNSKLKEILFLNNQLTGC 275 (414)
Q Consensus 202 ~~~~p~~-~~~~-~L~~L~l~~n~l~~~~~~--~~~~-~~L~~L~ls~N~-l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~ 275 (414)
+ .+|.. +... +|++|++++|.++ .+|. .+.. .+|++|++++|. +....+..+.. +++|++|++++|++++.
T Consensus 113 ~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 113 S-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG-LTFLEELEIDASDLQSY 189 (353)
T ss_dssp S-SCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT-CCEEEEEEEEETTCCEE
T ss_pred C-cCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccC-CCCCCEEECCCCCcCcc
Confidence 9 56665 5444 4999999999999 4554 4443 679999999995 66333445544 58999999999999988
Q ss_pred CccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhh---hCCCCCCeEecccccCccc----c
Q 039087 276 IPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLV---CSLRTLMNLTVAFNFFSGF----S 348 (414)
Q Consensus 276 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~----~ 348 (414)
.|..+..+++|++|++++|.++......+..+++|++|++++|++++..+..+ .....++.++|++|.+++. +
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 89999999999999999999974433345568999999999999996544433 3467899999999999874 4
Q ss_pred hhhhhhcccCcEEEecCCCCCCCCCCC----CCcccCCCCCCCcccc
Q 039087 349 QECARLLIRNVGFDFSANCIPGRDMQR----PQPDCSQIPGGGLSCL 391 (414)
Q Consensus 349 ~~~~~~~~~L~~L~ls~N~l~~~~~~~----~~~~~~~l~~~~l~c~ 391 (414)
++.+..+++|++|++++|+|+.+|... +.-....+.++++.|.
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 567788899999999999999887542 2223344555666664
No 55
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=4.9e-26 Score=227.40 Aligned_cols=237 Identities=24% Similarity=0.310 Sum_probs=136.9
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
.+++++|+|++|.+++..+ +..+++|++|++++|++++..+ +.++++|++|++++|.+++. +. +..+++|++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEE
Confidence 4678888888888886544 8888888888888888885443 78888888888888888854 33 77778888888
Q ss_pred cccccCCCCCCch--------------------hcc-cccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchh
Q 039087 196 LRFNSFSGPLPQD--------------------LFN-KKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPAS 254 (414)
Q Consensus 196 Ls~N~i~~~~p~~--------------------~~~-~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~ 254 (414)
+++|.+++ ++.. +.. .+|++|++++|.++. ++......+|++|++++|.+.+..+
T Consensus 141 l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~-- 216 (466)
T 1o6v_A 141 LSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITP-- 216 (466)
T ss_dssp EEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-ChhhccCCCCCEEEecCCccccccc--
Confidence 88887763 3320 111 226666666666652 2222222445666666665553322
Q ss_pred hhhcccCCcEEEccCCcCcccCccc----------------------cCCCCCCCEEEccCCCCCCCCcccccCCCCCcE
Q 039087 255 FGITNSKLKEILFLNNQLTGCIPEG----------------------VGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEI 312 (414)
Q Consensus 255 ~~~~~~~L~~L~Ls~N~l~~~~~~~----------------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 312 (414)
+.. +++|++|++++|++++ + .. +..+++|++|++++|.+++..+ +..+++|++
T Consensus 217 ~~~-l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 291 (466)
T 1o6v_A 217 LGI-LTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTN 291 (466)
T ss_dssp GGG-CTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred ccc-cCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--ccCCCccCe
Confidence 211 2445555555554442 1 22 4444445555555555443222 444555555
Q ss_pred EEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCC
Q 039087 313 LNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 313 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~ 371 (414)
|++++|++++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++.
T Consensus 292 L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred EEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence 5555555553222 4455555555555555555544 34455556666666665554
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=8.5e-28 Score=241.26 Aligned_cols=236 Identities=19% Similarity=0.192 Sum_probs=183.8
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
.++++.|+|++|.+.+..+..|..+++|++|+|++|.+++..| |..+++|++|+|++|.|++. | ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence 4478899999999988888888899999999999999886554 88889999999999988843 3 237899999
Q ss_pred cccccCCCCCCchhcccccccccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcc
Q 039087 196 LRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTG 274 (414)
Q Consensus 196 Ls~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~ 274 (414)
+++|.+++..+..+ ..|+.|++++|.+++..|..+.. .+|++|++++|.+++..|..+...+++|++|+|++|.+++
T Consensus 106 L~~N~l~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 106 AANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCSSCCCCEEECCC--SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCcCCCCCcccc--CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99999884433322 45888889998888776766654 5688889998888877777776445888889999888885
Q ss_pred cCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCc-ccchhhhh
Q 039087 275 CIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFS-GFSQECAR 353 (414)
Q Consensus 275 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~~~~~~ 353 (414)
. + .+..+++|++|+|++|.|++. |..+..+++|++|+|++|.|+ .+|..+..+++|++|++++|.+. +.++..+.
T Consensus 184 ~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 V-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp E-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred c-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 4 2 234588888999998888854 445778888889999998888 57777888888888999888887 55566666
Q ss_pred hcccCcEEEec
Q 039087 354 LLIRNVGFDFS 364 (414)
Q Consensus 354 ~~~~L~~L~ls 364 (414)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 66677777775
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=236.72 Aligned_cols=251 Identities=18% Similarity=0.178 Sum_probs=130.0
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEec
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDL 196 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 196 (414)
+++++|||++|++++..+..|.++++|++|+|++|+++...+..|.++++|++|++++|+++...+..+..+++|++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 44555555555555544455555555555555555555444455555555555555555555333334555555555555
Q ss_pred ccccCCC-CCCchhcccc-ccccccccccccc----------------------------ccCcccCCCCCCEEEcccCc
Q 039087 197 RFNSFSG-PLPQDLFNKK-LDAIFVNNNQFSG----------------------------ELPQNLGNSPASVINLANNR 246 (414)
Q Consensus 197 s~N~i~~-~~p~~~~~~~-L~~L~l~~n~l~~----------------------------~~~~~~~~~~L~~L~ls~N~ 246 (414)
++|.+++ .+|..+.... |++|++++|.+++ ..+..+...+|++|++++|.
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 211 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccc
Confidence 5555543 2344444332 5555555554443 33333322334444444431
Q ss_pred ----------------------------------------------------------CCCCCchhhhhcccCCcEEEcc
Q 039087 247 ----------------------------------------------------------LSGSIPASFGITNSKLKEILFL 268 (414)
Q Consensus 247 ----------------------------------------------------------l~~~~p~~~~~~~~~L~~L~Ls 268 (414)
+.+.++..+.. +++|++|+++
T Consensus 212 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~ 290 (570)
T 2z63_A 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLV 290 (570)
T ss_dssp SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG-GTTCSEEEEE
T ss_pred ccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC-cCcccEEEec
Confidence 11112222222 3567777777
Q ss_pred CCcCcccCccccCCCCCCCEEEccCCCCCCCCccc-c-------------------cCCCCCcEEEcccCCCCCCC--ch
Q 039087 269 NNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDT-I-------------------SCMSDIEILNLAHNQLSGEL--PD 326 (414)
Q Consensus 269 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l-------------------~~l~~L~~L~Ls~N~l~~~~--p~ 326 (414)
+|.+. .+|..+..+ +|++|++++|.+. .+|.. + ..+++|++|++++|++++.. +.
T Consensus 291 ~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 367 (570)
T 2z63_A 291 SVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367 (570)
T ss_dssp SCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEH
T ss_pred Cccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccc
Confidence 77666 455555555 5555555555554 22221 0 34556666666666666332 45
Q ss_pred hhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCC
Q 039087 327 LVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRD 372 (414)
Q Consensus 327 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~ 372 (414)
.+..+++|++|++++|.+.+.++. +..+++|++|++++|.+++.+
T Consensus 368 ~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCT
T ss_pred cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccccc
Confidence 566666666666666666655444 445555666666666555543
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.5e-27 Score=237.85 Aligned_cols=219 Identities=18% Similarity=0.160 Sum_probs=188.6
Q ss_pred CCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccccccc
Q 039087 138 SLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAI 217 (414)
Q Consensus 138 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L 217 (414)
..+++|++|+|++|.|++..|..|..+++|++|+|++|.+++..| +..+++|++|+|++|.|+ .+|.. .+|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~~---~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVG---PSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEEC---TTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCCC---CCcCEE
Confidence 344589999999999998888899999999999999999996665 889999999999999998 44432 569999
Q ss_pred cccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccC-CCCCCCEEEccCCCC
Q 039087 218 FVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVG-LFSEMQVFDVSFNSL 296 (414)
Q Consensus 218 ~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l 296 (414)
++++|.+++..+..+ .+|++|++++|.+++..|..+.. +++|++|++++|.+++..|..+. .+++|++|+|++|.|
T Consensus 105 ~L~~N~l~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEECCC--SSCEEEECCSSCCCSGGGBCGGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcccc--CCCCEEECCCCCCCCCCchhhcC-CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 999999997655443 57999999999999766767665 48999999999999988888776 799999999999999
Q ss_pred CCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCC
Q 039087 297 MGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIP 369 (414)
Q Consensus 297 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~ 369 (414)
++. +. +..+++|++|+|++|.|++ +|..+..+++|++|+|++|.|++++ ..+..+++|+.|++++|++.
T Consensus 182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 182 YDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEEC-TTCCCCTTCCEEECTTCCBC
T ss_pred ccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccc-hhhccCCCCCEEEcCCCCCc
Confidence 865 32 3468999999999999995 5556889999999999999999854 45677789999999999998
No 59
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.3e-25 Score=224.41 Aligned_cols=248 Identities=24% Similarity=0.246 Sum_probs=172.6
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCch------------
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPL------------ 183 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~------------ 183 (414)
.+++++|++++|.+.+..+ +..+++|++|++++|++++. +. +.++++|++|++++|.+.+. +.
T Consensus 89 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l 163 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSF 163 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-GGGTTCTTCSEEEE
T ss_pred cccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-hhhccCCcccEeec
Confidence 4677888888888776544 77778888888888777743 32 66666666666666665532 11
Q ss_pred --------hccCCCCCCEEecccccCCCCCCch---------------------hcc-cccccccccccccccccCcccC
Q 039087 184 --------VTLYIPNLVYLDLRFNSFSGPLPQD---------------------LFN-KKLDAIFVNNNQFSGELPQNLG 233 (414)
Q Consensus 184 --------~~~~l~~L~~L~Ls~N~i~~~~p~~---------------------~~~-~~L~~L~l~~n~l~~~~~~~~~ 233 (414)
.+..+++|++|++++|.++ .++.. +.. .+|++|++++|.+++ ++....
T Consensus 164 ~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~ 241 (466)
T 1o6v_A 164 GNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-IGTLAS 241 (466)
T ss_dssp EESCCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGGG
T ss_pred CCcccCchhhccCCCCCEEECcCCcCC-CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc-chhhhc
Confidence 1334455555555555554 22211 111 225555555555542 222222
Q ss_pred CCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEE
Q 039087 234 NSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEIL 313 (414)
Q Consensus 234 ~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 313 (414)
..+|++|++++|.+.+..+ +.. +++|++|++++|.+++. +. +..+++|++|++++|++++..+ +..+++|++|
T Consensus 242 l~~L~~L~l~~n~l~~~~~--~~~-l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP--LSG-LTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTT-CTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred CCCCCEEECCCCccccchh--hhc-CCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 3567888888888774333 333 48899999999999854 33 8899999999999999996544 7889999999
Q ss_pred EcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCCCCCCCcccCCCC
Q 039087 314 NLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDMQRPQPDCSQIP 384 (414)
Q Consensus 314 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~~~l~ 384 (414)
++++|++++..| +..+++|++|++++|++++. ..+..+++|++|++++|++++.++ ...+..+.
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~ 378 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP---LANLTRIT 378 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCC
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch---hhcCCCCC
Confidence 999999996655 77899999999999999987 357788899999999999998864 34444443
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=6.2e-27 Score=239.29 Aligned_cols=249 Identities=19% Similarity=0.176 Sum_probs=189.5
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEec
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDL 196 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 196 (414)
++++.|++++|.+. .+|..+..+ +|++|++++|.++ .+|. ..+++|++|++++|.+.+.++. ..+++|++|++
T Consensus 282 ~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l 354 (570)
T 2z63_A 282 TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDL 354 (570)
T ss_dssp TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEEC
T ss_pred CcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeC
Confidence 45677777777766 355566666 7777777777776 4454 3567777777777777655544 56788888888
Q ss_pred ccccCCCCC--Cchhcccc-cccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCc
Q 039087 197 RFNSFSGPL--PQDLFNKK-LDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLT 273 (414)
Q Consensus 197 s~N~i~~~~--p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~ 273 (414)
++|.+++.. +..+.... |++|++++|.+.+..+......+|++|++++|.+.+..+...+..+++|++|++++|.+.
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 434 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence 888887432 45555544 888888888888544442233578899999988886555333334588999999999888
Q ss_pred ccCccccCCCCCCCEEEccCCCCC-CCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhh
Q 039087 274 GCIPEGVGLFSEMQVFDVSFNSLM-GHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECA 352 (414)
Q Consensus 274 ~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 352 (414)
+..+..|..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++.++..+
T Consensus 435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 514 (570)
T 2z63_A 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514 (570)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence 888888888899999999999887 4678888888999999999999987778888888999999999999998888888
Q ss_pred hhcccCcEEEecCCCCCCCC
Q 039087 353 RLLIRNVGFDFSANCIPGRD 372 (414)
Q Consensus 353 ~~~~~L~~L~ls~N~l~~~~ 372 (414)
..+++|++|++++|++++..
T Consensus 515 ~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 515 DRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp TTCTTCCEEECCSSCBCCCT
T ss_pred hcccCCcEEEecCCcccCCC
Confidence 88888999999999888753
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=9.4e-28 Score=227.29 Aligned_cols=223 Identities=18% Similarity=0.245 Sum_probs=186.6
Q ss_pred EEEEEcCCCCCC-CccccccC-------CCCCCCEEECCCCcCCccCcccc--CCCCCCCEEeCcCccCCCCCchhccCC
Q 039087 119 VAGIDLNHANLQ-GNLVKELS-------LLTDVNLLHLNTNRFSGTVPETF--KDLTSLQELDLSNNQFSGPFPLVTLYI 188 (414)
Q Consensus 119 l~~L~L~~n~l~-~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l 188 (414)
++.|+|++|.+. ..++..+. .+++|++|+|++|++++.+|..+ ..+++|++|+|++|++++. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 788999999984 44555554 79999999999999998889876 8999999999999999966 8777776
Q ss_pred -----CCCCEEecccccCCCCCCchhcccc-cccccccccccccc--cCccc---CCCCCCEEEcccCcCCC--CCchhh
Q 039087 189 -----PNLVYLDLRFNSFSGPLPQDLFNKK-LDAIFVNNNQFSGE--LPQNL---GNSPASVINLANNRLSG--SIPASF 255 (414)
Q Consensus 189 -----~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~l~~n~l~~~--~~~~~---~~~~L~~L~ls~N~l~~--~~p~~~ 255 (414)
++|++|++++|++++..|..+.... |++|++++|++.+. ++..+ ...+|++|++++|++++ .++..+
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 9999999999999966667777655 99999999998765 23333 23679999999999983 334455
Q ss_pred hhcccCCcEEEccCCcCcccCc-cccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCC
Q 039087 256 GITNSKLKEILFLNNQLTGCIP-EGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTL 334 (414)
Q Consensus 256 ~~~~~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 334 (414)
+..+++|++|++++|++++..| ..+..+++|++|+|++|+|+ .+|..+. ++|++|+|++|+|++. |. +..+++|
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence 4455899999999999997764 56677899999999999999 7787776 8999999999999954 66 8899999
Q ss_pred CeEecccccCccc
Q 039087 335 MNLTVAFNFFSGF 347 (414)
Q Consensus 335 ~~L~L~~N~l~~~ 347 (414)
++|+|++|.|++.
T Consensus 299 ~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 299 GNLSLKGNPFLDS 311 (312)
T ss_dssp EEEECTTCTTTCC
T ss_pred CEEeccCCCCCCC
Confidence 9999999999864
No 62
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=3e-25 Score=220.89 Aligned_cols=228 Identities=14% Similarity=0.166 Sum_probs=159.1
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
.+++++|++++|.+++. | .+..+++|++|+|++|+|++. + +..+++|++|++++|++++. + +..+++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 35688888888888764 3 577888888888888888753 3 77788888888888888853 3 77788888888
Q ss_pred cccccCCCCCCchhccc-ccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcc
Q 039087 196 LRFNSFSGPLPQDLFNK-KLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTG 274 (414)
Q Consensus 196 Ls~N~i~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~ 274 (414)
+++|++++ +| +... +|++|++++|.+++ ++ .-...+|++|++++|...+.++ +.. +++|++|++++|++++
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~-l~~l~~L~~L~l~~n~~~~~~~--~~~-l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID-VSHNTQLTELDCHLNKKITKLD--VTP-QTQLTTLDCSFNKITE 184 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC-CTTCTTCCEEECTTCSCCCCCC--CTT-CTTCCEEECCSSCCCC
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec-cccCCcCCEEECCCCCcccccc--ccc-CCcCCEEECCCCccce
Confidence 88888874 44 3333 38888888888875 32 2223567888888885544553 333 3778888888888774
Q ss_pred cCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhh
Q 039087 275 CIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARL 354 (414)
Q Consensus 275 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 354 (414)
+| +..+++|++|++++|++++. .+..+++|++|++++|++++ +| +..+++|++|++++|++++.++. .
T Consensus 185 -l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~---~ 252 (457)
T 3bz5_A 185 -LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS---T 252 (457)
T ss_dssp -CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT---T
T ss_pred -ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH---H
Confidence 44 66777888888888887754 36777788888888888874 55 66777888888888888776533 3
Q ss_pred cccCcEEEecCCCCCCC
Q 039087 355 LIRNVGFDFSANCIPGR 371 (414)
Q Consensus 355 ~~~L~~L~ls~N~l~~~ 371 (414)
+++|+.|++++|.++..
T Consensus 253 l~~L~~L~l~~n~L~~L 269 (457)
T 3bz5_A 253 LSKLTTLHCIQTDLLEI 269 (457)
T ss_dssp CTTCCEEECTTCCCSCC
T ss_pred CCCCCEEeccCCCCCEE
Confidence 33445555555554443
No 63
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=1.5e-24 Score=215.93 Aligned_cols=183 Identities=16% Similarity=0.214 Sum_probs=105.7
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
.+++++|+|++|.+++. + +..+++|++|++++|+|++. + +.++++|++|++++|++++ ++ +..+++|++|+
T Consensus 63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN 133 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence 46778888888888764 2 77788888888888888753 3 7777888888888888775 34 67777888888
Q ss_pred cccccCCCCCCchhccc-ccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcc
Q 039087 196 LRFNSFSGPLPQDLFNK-KLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTG 274 (414)
Q Consensus 196 Ls~N~i~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~ 274 (414)
+++|++++ ++ +... +|++|++++|...+.++ .....+|++|++++|++++ +| +.. +++|++|++++|++++
T Consensus 134 l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~-l~--l~~-l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 134 CARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITE-LD--VSQ-NKLLNRLNCDTNNITK 205 (457)
T ss_dssp CTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSCCCC-CC--CTT-CTTCCEEECCSSCCSC
T ss_pred CCCCccce-ec--cccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCccce-ec--ccc-CCCCCEEECcCCcCCe
Confidence 88887774 33 2222 26666666664333331 1112345555555555552 33 222 2445555555555543
Q ss_pred cCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCC
Q 039087 275 CIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLS 321 (414)
Q Consensus 275 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 321 (414)
. .+..+++|++|++++|++++ +| +..+++|++|++++|+++
T Consensus 206 ~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 206 L---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp C---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred e---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 2 24444455555555555543 23 444444444444444444
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=7.3e-25 Score=205.20 Aligned_cols=198 Identities=21% Similarity=0.261 Sum_probs=128.2
Q ss_pred cEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecc
Q 039087 118 VVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLR 197 (414)
Q Consensus 118 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 197 (414)
+++++++++++++. +|..+. ++++.|+|++|+|++..+..|.++++|++|+|++|.|++ ++.. ..+++|++|+++
T Consensus 11 ~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECC
T ss_pred CccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECC
Confidence 44555555555542 222221 345555555555554444445555555555555555542 2221 344555555555
Q ss_pred cccCCCCCCchhcccccccccccccccccccCcccCC-CCCCEEEcccCcCCCCCc-hhhhhcccCCcEEEccCCcCccc
Q 039087 198 FNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIP-ASFGITNSKLKEILFLNNQLTGC 275 (414)
Q Consensus 198 ~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p-~~~~~~~~~L~~L~Ls~N~l~~~ 275 (414)
+|+++ .+|..+.. .+|++|++++|+++ .++ ..+.. +++|++|++++|++++.
T Consensus 86 ~N~l~------------------------~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~-l~~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 86 HNQLQ------------------------SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG-LGELQELYLKGNELKTL 139 (290)
T ss_dssp SSCCS------------------------SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTT-CTTCCEEECTTSCCCCC
T ss_pred CCcCC------------------------cCchhhccCCCCCEEECCCCcCc-ccCHHHHcC-CCCCCEEECCCCCCCcc
Confidence 55544 34443332 56888889988888 454 44444 47888899988888866
Q ss_pred CccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCccc
Q 039087 276 IPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGF 347 (414)
Q Consensus 276 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 347 (414)
.+..|..+++|++|+|++|+|+...+..|..+++|++|+|++|+|+ .+|..+..+.+|++|+|++|.+...
T Consensus 140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 6667788888889999888888666666778888888999888888 7777777788888888888887653
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=5.3e-25 Score=204.47 Aligned_cols=203 Identities=18% Similarity=0.180 Sum_probs=88.8
Q ss_pred CCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccc-ccccccc
Q 039087 142 DVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKK-LDAIFVN 220 (414)
Q Consensus 142 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~l~ 220 (414)
+|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..+.... |++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 455555555555544444555555555666655555544444555555555555555555522222222211 3333333
Q ss_pred ccccccccCcccCC-CCCCEEEcccCcCCC-CCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCC----EEEccCC
Q 039087 221 NNQFSGELPQNLGN-SPASVINLANNRLSG-SIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQ----VFDVSFN 294 (414)
Q Consensus 221 ~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~-~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~Ls~N 294 (414)
+|.+.+..+..+.. .+|++|++++|.+++ .+|..+..+ ++|++|++++|++++..+..+..+++|+ +|++++|
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccC-CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 33332211111211 234455555544442 133443332 4455555555554443333333333333 4444444
Q ss_pred CCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcc
Q 039087 295 SLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSG 346 (414)
Q Consensus 295 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 346 (414)
.+++..+..+. ..+|++|+|++|+|++..+..+..+++|++|+|++|.++.
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 44432222222 2244444444444443333333444444444444444443
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2.1e-25 Score=207.26 Aligned_cols=222 Identities=16% Similarity=0.142 Sum_probs=182.8
Q ss_pred EEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhccc-ccccccccccc
Q 039087 145 LLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNK-KLDAIFVNNNQ 223 (414)
Q Consensus 145 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~-~L~~L~l~~n~ 223 (414)
.++..+..++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+... +|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3455555666 5666554 579999999999997777789999999999999999984444455554 49999999999
Q ss_pred cccccCcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCccc-CccccCCCCCCCEEEccCCCCCCCCc
Q 039087 224 FSGELPQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGC-IPEGVGLFSEMQVFDVSFNSLMGHLP 301 (414)
Q Consensus 224 l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p 301 (414)
+++..+..+.. .+|++|++++|++.+..+..+.. +++|++|++++|++++. +|..|..+++|++|++++|++++..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTT-CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhccc-CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 99766666655 57999999999999544435554 48999999999999863 68899999999999999999998777
Q ss_pred ccccCCCCCc----EEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCC
Q 039087 302 DTISCMSDIE----ILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 302 ~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~ 371 (414)
..+..+.+|+ +|++++|.+++..+..+ ...+|++|+|++|+++++++..+..+++|+.|++++|++++.
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred HHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 7777766666 89999999995444444 456899999999999999888889999999999999999875
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=5.2e-25 Score=226.14 Aligned_cols=217 Identities=26% Similarity=0.329 Sum_probs=112.9
Q ss_pred EEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEeccc
Q 039087 119 VAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRF 198 (414)
Q Consensus 119 l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 198 (414)
++.|++++|+++ .+|..+. ++|++|+|++|+|+ .+|. .+++|++|+|++|+|+ .+|. .+++|++|++++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECS
T ss_pred CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcC
Confidence 445555555554 3333332 44555555555554 3333 2344555555555554 2333 344455555555
Q ss_pred ccCCC-------------------CCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcc
Q 039087 199 NSFSG-------------------PLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITN 259 (414)
Q Consensus 199 N~i~~-------------------~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~ 259 (414)
|.+++ .+|..+ .+|++|++++|.++ .+|.. ..+|+.|++++|.++ .+| ..+
T Consensus 111 N~l~~l~~~l~~L~~L~L~~N~l~~lp~~l--~~L~~L~Ls~N~l~-~l~~~--~~~L~~L~L~~N~l~-~l~----~~~ 180 (622)
T 3g06_A 111 NPLTHLPALPSGLCKLWIFGNQLTSLPVLP--PGLQELSVSDNQLA-SLPAL--PSELCKLWAYNNQLT-SLP----MLP 180 (622)
T ss_dssp CCCCCCCCCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCS-CCCCC--CTTCCEEECCSSCCS-CCC----CCC
T ss_pred CcCCCCCCCCCCcCEEECCCCCCCcCCCCC--CCCCEEECcCCcCC-CcCCc--cCCCCEEECCCCCCC-CCc----ccC
Confidence 55441 333321 23555555555444 22221 123455555555555 344 112
Q ss_pred cCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEec
Q 039087 260 SKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTV 339 (414)
Q Consensus 260 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 339 (414)
++|++|++++|++++ +|.. +++|+.|++++|.++ .+|.. +++|++|+|++|+|+ .+| ..+++|++|+|
T Consensus 181 ~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~L 248 (622)
T 3g06_A 181 SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLP---VLPSELKELMV 248 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCC---CCCTTCCEEEC
T ss_pred CCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccC-cCC---CCCCcCcEEEC
Confidence 556666666666652 3322 355666666666665 33332 356777777777777 355 34567777777
Q ss_pred ccccCcccchhhhhhcccCcEEEecCCCCCCCC
Q 039087 340 AFNFFSGFSQECARLLIRNVGFDFSANCIPGRD 372 (414)
Q Consensus 340 ~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~ 372 (414)
++|.|+.++. .+++|+.|++++|+|+.+|
T Consensus 249 s~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp 277 (622)
T 3g06_A 249 SGNRLTSLPM----LPSGLLSLSVYRNQLTRLP 277 (622)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCCSCC
T ss_pred CCCCCCcCCc----ccccCcEEeCCCCCCCcCC
Confidence 7777776544 4456777777777777654
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.3e-25 Score=223.44 Aligned_cols=233 Identities=22% Similarity=0.227 Sum_probs=128.5
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCC-------------CEEeCcCccCCC----
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSL-------------QELDLSNNQFSG---- 179 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------------~~L~Ls~N~l~~---- 179 (414)
.++++|++++|++ +.+|..++++++|++|++++|++++.+|..++++++| ++|++++|.+++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 4566666666666 5666666666666666666666665666655554432 455555555442
Q ss_pred ---------------CCchhccCCCCCCEEecccccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEccc
Q 039087 180 ---------------PFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLAN 244 (414)
Q Consensus 180 ---------------~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~ 244 (414)
.+|.. +++|++|++++|+++ .+|.. ..+|++|++++|.+++ +|......+|++|++++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~-~l~~~--~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLK-ALSDL--PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDN 162 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-CCCSC--CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccC-cccCC--CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCC
Confidence 13322 245555555555554 22221 1346667777776663 55322224577777777
Q ss_pred CcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCC
Q 039087 245 NRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGEL 324 (414)
Q Consensus 245 N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 324 (414)
|+++ .+|..+ .+|++|++++|++++ +| .+..+++|++|++++|++++ +|... ++|++|++++|.++ .+
T Consensus 163 N~l~-~lp~~~----~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 163 NSLK-KLPDLP----PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-EL 230 (454)
T ss_dssp SCCS-CCCCCC----TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SC
T ss_pred CcCc-ccCCCc----ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cc
Confidence 7776 355432 467777777777764 44 46777777777777777764 44322 46778888888777 66
Q ss_pred chhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCCCC
Q 039087 325 PDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDMQ 374 (414)
Q Consensus 325 p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~ 374 (414)
|. +..+++|++|++++|++++++. ..++|++|++++|++++++..
T Consensus 231 p~-~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~~ 275 (454)
T 1jl5_A 231 PE-LQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPEL 275 (454)
T ss_dssp CC-CTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCCC
T ss_pred cc-cCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCcc
Confidence 63 7778888888888888886543 235678888888888776543
No 69
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=2.4e-26 Score=222.12 Aligned_cols=251 Identities=19% Similarity=0.171 Sum_probs=189.5
Q ss_pred EEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCc----cccCCCC-CCCEEeCcCccCCCCCchhccCC-----CC
Q 039087 121 GIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVP----ETFKDLT-SLQELDLSNNQFSGPFPLVTLYI-----PN 190 (414)
Q Consensus 121 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~ 190 (414)
..+++.|++++.++..+...++|++|+|++|.|++..+ ..|.+++ +|++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35788889988888777777779999999999986665 6777888 89999999999987767666664 89
Q ss_pred CCEEecccccCCCCCCchhcc------cccccccccccccccccCcccC------CCCCCEEEcccCcCCCCCchhh---
Q 039087 191 LVYLDLRFNSFSGPLPQDLFN------KKLDAIFVNNNQFSGELPQNLG------NSPASVINLANNRLSGSIPASF--- 255 (414)
Q Consensus 191 L~~L~Ls~N~i~~~~p~~~~~------~~L~~L~l~~n~l~~~~~~~~~------~~~L~~L~ls~N~l~~~~p~~~--- 255 (414)
|++|+|++|.+++..+..+.. .+|++|++++|.++...+..+. ..+|++|++++|.+++.....+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999998665554433 3599999999998865544332 2479999999999885444333
Q ss_pred -hhcccCCcEEEccCCcCcccCcccc----CCC-CCCCEEEccCCCCCCC----CcccccC-CCCCcEEEcccCCCCCCC
Q 039087 256 -GITNSKLKEILFLNNQLTGCIPEGV----GLF-SEMQVFDVSFNSLMGH----LPDTISC-MSDIEILNLAHNQLSGEL 324 (414)
Q Consensus 256 -~~~~~~L~~L~Ls~N~l~~~~~~~~----~~l-~~L~~L~Ls~N~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~ 324 (414)
....++|++|++++|++++..+..+ ..+ ++|++|+|++|.|++. ++..+.. .++|++|+|++|.|++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 3332489999999999986665433 344 5899999999999853 4445554 458999999999998654
Q ss_pred c----hhhhCCCCCCeEecccccCcccchh-------hhhhcccCcEEEecCCCCCCC
Q 039087 325 P----DLVCSLRTLMNLTVAFNFFSGFSQE-------CARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 325 p----~~l~~l~~L~~L~L~~N~l~~~~~~-------~~~~~~~L~~L~ls~N~l~~~ 371 (414)
+ ..+..+++|++|+|++|.+.++.+. .+..+++|++||+++|+|...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4 3346778999999999997666543 344566788999999998765
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=5.1e-24 Score=211.82 Aligned_cols=226 Identities=26% Similarity=0.348 Sum_probs=134.1
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEec
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDL 196 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 196 (414)
+++++|++++|.+++ +| .|..+++|++|++++|++++ +|..+ .+|++|++++|++++ +| .+..+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 467777777777775 44 47777777777777777773 45432 467777777777774 45 4677777777777
Q ss_pred ccccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccC
Q 039087 197 RFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCI 276 (414)
Q Consensus 197 s~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~ 276 (414)
++|+++ .+|... .+|++|++++|.++ .+|......+|++|++++|+++ .+|.. .++|++|++++|++++ +
T Consensus 203 ~~N~l~-~l~~~~--~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~N~l~~-l 272 (454)
T 1jl5_A 203 DNNSLK-KLPDLP--LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLK-TLPDL----PPSLEALNVRDNYLTD-L 272 (454)
T ss_dssp CSSCCS-SCCCCC--TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCS-SCCSC----CTTCCEEECCSSCCSC-C
T ss_pred CCCcCC-cCCCCc--CcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCC-ccccc----ccccCEEECCCCcccc-c
Confidence 777776 344322 35777777777776 5564223345777777777776 34432 2456666666666653 3
Q ss_pred ccccCCCCCCCEEEccCCCCCC--CCcccc-------------cCC-CCCcEEEcccCCCCCCCchhhhCCCCCCeEecc
Q 039087 277 PEGVGLFSEMQVFDVSFNSLMG--HLPDTI-------------SCM-SDIEILNLAHNQLSGELPDLVCSLRTLMNLTVA 340 (414)
Q Consensus 277 ~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l-------------~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 340 (414)
|.. +++|++|++++|++++ .+|..+ ..+ ++|++|++++|++++ +|.. +++|++|+++
T Consensus 273 ~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~ 345 (454)
T 1jl5_A 273 PEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIAS 345 (454)
T ss_dssp CCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred Ccc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECC
Confidence 332 2455555555555543 111111 111 356666666666663 4432 3566666666
Q ss_pred cccCcccchhhhhhcccCcEEEecCCCCCCC
Q 039087 341 FNFFSGFSQECARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 341 ~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~ 371 (414)
+|+++.++. .+++|++|++++|++++.
T Consensus 346 ~N~l~~lp~----~l~~L~~L~L~~N~l~~l 372 (454)
T 1jl5_A 346 FNHLAEVPE----LPQNLKQLHVEYNPLREF 372 (454)
T ss_dssp SSCCSCCCC----CCTTCCEEECCSSCCSSC
T ss_pred CCccccccc----hhhhccEEECCCCCCCcC
Confidence 666665433 245566666666666663
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=5.2e-24 Score=218.67 Aligned_cols=221 Identities=26% Similarity=0.337 Sum_probs=167.7
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
.++++.|+|++|+++. +|. .+++|++|+|++|+|++ +|. .+++|++|++++|+++ .+|.. +++|++|+
T Consensus 80 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~ 147 (622)
T 3g06_A 80 PPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELS 147 (622)
T ss_dssp CTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEE
T ss_pred CCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEE
Confidence 3455556666655553 222 45566666666666652 333 3466777777777776 34543 48999999
Q ss_pred cccccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCccc
Q 039087 196 LRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGC 275 (414)
Q Consensus 196 Ls~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~ 275 (414)
+++|.++ .+|.. ..+|+.|++++|.++ .+|. ...+|++|++++|.++ .+|.. .++|+.|++++|.++ .
T Consensus 148 Ls~N~l~-~l~~~--~~~L~~L~L~~N~l~-~l~~--~~~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~-~ 215 (622)
T 3g06_A 148 VSDNQLA-SLPAL--PSELCKLWAYNNQLT-SLPM--LPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-S 215 (622)
T ss_dssp CCSSCCS-CCCCC--CTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-S
T ss_pred CcCCcCC-CcCCc--cCCCCEEECCCCCCC-CCcc--cCCCCcEEECCCCCCC-CCCCc----cchhhEEECcCCccc-c
Confidence 9999998 56643 245999999999999 4662 2367999999999999 56653 378999999999998 5
Q ss_pred CccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhc
Q 039087 276 IPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLL 355 (414)
Q Consensus 276 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~ 355 (414)
+|.. +++|++|++++|+|++ +| ..+++|++|+|++|+|+ .+|. .+++|++|+|++|+|+.+ |..+..+
T Consensus 216 l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~l-p~~l~~l 283 (622)
T 3g06_A 216 LPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRL-PESLIHL 283 (622)
T ss_dssp CCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSC-CGGGGGS
T ss_pred cCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcC-CHHHhhc
Confidence 5543 5789999999999985 55 45689999999999999 6776 678999999999999955 5567888
Q ss_pred ccCcEEEecCCCCCCCC
Q 039087 356 IRNVGFDFSANCIPGRD 372 (414)
Q Consensus 356 ~~L~~L~ls~N~l~~~~ 372 (414)
++|+.|+|++|+|++..
T Consensus 284 ~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 284 SSETTVNLEGNPLSERT 300 (622)
T ss_dssp CTTCEEECCSCCCCHHH
T ss_pred cccCEEEecCCCCCCcC
Confidence 99999999999998764
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=9.7e-24 Score=197.55 Aligned_cols=206 Identities=18% Similarity=0.101 Sum_probs=176.4
Q ss_pred ccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccccc
Q 039087 136 ELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLD 215 (414)
Q Consensus 136 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~ 215 (414)
.+..+++++++++++|+++ .+|..+. +++++|+|++|.+++..+..|..+++|++|+|++|.|+ .++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~--------- 71 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ--------- 71 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE---------
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-ccc---------
Confidence 3678899999999999999 6776654 68999999999999888889999999999999999998 222
Q ss_pred cccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCC
Q 039087 216 AIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNS 295 (414)
Q Consensus 216 ~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 295 (414)
..-...+|++|++++|+++ .+|..+..+ ++|++|++++|++++..+..|..+++|++|+|++|+
T Consensus 72 --------------~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l-~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 72 --------------VDGTLPVLGTLDLSHNQLQ-SLPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp --------------CCSCCTTCCEEECCSSCCS-SCCCCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred --------------CCCCCCcCCEEECCCCcCC-cCchhhccC-CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 1223356999999999999 888877654 899999999999997777889999999999999999
Q ss_pred CCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCC
Q 039087 296 LMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 296 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~ 371 (414)
+++..+..|..+++|++|+|++|+|+...+..|..+++|++|+|++|+|+.++...+. ..+|+.|++++|++...
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~-~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG-SHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCCCSEEECCSCCBCCS
T ss_pred CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcc-cccCCeEEeCCCCccCc
Confidence 9987777889999999999999999955556678899999999999999977665554 45899999999999763
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=2e-24 Score=197.84 Aligned_cols=192 Identities=20% Similarity=0.214 Sum_probs=137.5
Q ss_pred CCCCCCceeeCCCCCCCCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCC
Q 039087 100 NVCSYKGIFCSDLGAQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSG 179 (414)
Q Consensus 100 ~~c~~~gv~c~~~~~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 179 (414)
.||.|.|..|.. ..++++++++.++. +|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.+++
T Consensus 3 ~Cp~~~gC~C~~------~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 73 (251)
T 3m19_A 3 TCETVTGCTCNE------GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT 73 (251)
T ss_dssp -CHHHHSSEEEG------GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred cCCCCCceEcCC------CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc
Confidence 466788889943 45678899888884 444444 578889999998887777788888889999999888887
Q ss_pred CCchhccCCCCCCEEecccccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcc
Q 039087 180 PFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITN 259 (414)
Q Consensus 180 ~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~ 259 (414)
..+..|..+++|++|+|++|+++ .++.. . +..+
T Consensus 74 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~----------------------~------------------------~~~l 106 (251)
T 3m19_A 74 LSAGVFDDLTELGTLGLANNQLA-SLPLG----------------------V------------------------FDHL 106 (251)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCC-CCCTT----------------------T------------------------TTTC
T ss_pred cCHhHhccCCcCCEEECCCCccc-ccChh----------------------H------------------------hccc
Confidence 77777888888888888888877 22211 1 1112
Q ss_pred cCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEec
Q 039087 260 SKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTV 339 (414)
Q Consensus 260 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 339 (414)
++|++|++++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..+..+++|++|+|
T Consensus 107 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 45666666666666444445666777777777777777555556777777777777777777555556777777888888
Q ss_pred ccccCccc
Q 039087 340 AFNFFSGF 347 (414)
Q Consensus 340 ~~N~l~~~ 347 (414)
++|.+...
T Consensus 187 ~~N~~~c~ 194 (251)
T 3m19_A 187 FGNQFDCS 194 (251)
T ss_dssp CSCCBCTT
T ss_pred eCCceeCC
Confidence 88877765
No 74
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=7.2e-26 Score=220.65 Aligned_cols=236 Identities=20% Similarity=0.260 Sum_probs=121.9
Q ss_pred ccCCCCCCCEEECCCCcCCccC----ccccCCCCCCCEEeCcCcc---CCCCCchhc-------cCCCCCCEEecccccC
Q 039087 136 ELSLLTDVNLLHLNTNRFSGTV----PETFKDLTSLQELDLSNNQ---FSGPFPLVT-------LYIPNLVYLDLRFNSF 201 (414)
Q Consensus 136 ~l~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~Ls~N~---l~~~~p~~~-------~~l~~L~~L~Ls~N~i 201 (414)
.+..+++|++|+|++|+|+... +..|..+++|++|+|++|. +++.+|..+ ..+++|++|+|++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 3444455555555555554332 2224445555555555532 222333332 3445555555555555
Q ss_pred CC----CCCchhccc-ccccccccccccccccCcccCC--------------CCCCEEEcccCcCC-CCCc---hhhhhc
Q 039087 202 SG----PLPQDLFNK-KLDAIFVNNNQFSGELPQNLGN--------------SPASVINLANNRLS-GSIP---ASFGIT 258 (414)
Q Consensus 202 ~~----~~p~~~~~~-~L~~L~l~~n~l~~~~~~~~~~--------------~~L~~L~ls~N~l~-~~~p---~~~~~~ 258 (414)
+. .+|..+... +|++|++++|.++...+..+.. .+|++|++++|+++ ..++ ..+..
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~- 185 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS- 185 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh-
Confidence 43 133333332 2555555555544222221111 35666666666665 2233 22223
Q ss_pred ccCCcEEEccCCcCcc-----cCccccCCCCCCCEEEccCCCCC----CCCcccccCCCCCcEEEcccCCCCCC----Cc
Q 039087 259 NSKLKEILFLNNQLTG-----CIPEGVGLFSEMQVFDVSFNSLM----GHLPDTISCMSDIEILNLAHNQLSGE----LP 325 (414)
Q Consensus 259 ~~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p 325 (414)
+++|++|++++|+++. ..+..+..+++|++|+|++|.++ ..+|..+..+++|++|+|++|.|++. ++
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 3566777777666652 22335566666777777777664 34555666666677777777766643 34
Q ss_pred hhhhC--CCCCCeEecccccCcc----cchhhh-hhcccCcEEEecCCCCCCCC
Q 039087 326 DLVCS--LRTLMNLTVAFNFFSG----FSQECA-RLLIRNVGFDFSANCIPGRD 372 (414)
Q Consensus 326 ~~l~~--l~~L~~L~L~~N~l~~----~~~~~~-~~~~~L~~L~ls~N~l~~~~ 372 (414)
..+.. +++|++|+|++|.|++ .++..+ ..+++|++|++++|+|++..
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 44433 6667777777776666 233333 44566677777777666554
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.9e-23 Score=193.44 Aligned_cols=205 Identities=22% Similarity=0.259 Sum_probs=166.1
Q ss_pred CCCCCCC-C--CCCceeeCCCC------CCCCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCC
Q 039087 95 TWVGDNV-C--SYKGIFCSDLG------AQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLT 165 (414)
Q Consensus 95 ~w~~~~~-c--~~~gv~c~~~~------~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 165 (414)
.|.+..| | .+..+.|.... ..+..++.|+|++|++....+..|..+++|++|+|++|+++...+..|.+++
T Consensus 6 ~~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~ 85 (270)
T 2o6q_A 6 KKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK 85 (270)
T ss_dssp GGGTCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCT
T ss_pred CCCCCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCC
Confidence 3554433 4 46778886431 1245799999999999988878899999999999999999966666678999
Q ss_pred CCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccC
Q 039087 166 SLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANN 245 (414)
Q Consensus 166 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N 245 (414)
+|++|+|++|+++...+..|..+++|++|++++|.+++..+..+. ...+|++|++++|
T Consensus 86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------------------~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD----------------------SLTKLTYLSLGYN 143 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT----------------------TCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhC----------------------cCcCCCEEECCCC
Confidence 999999999999977777889999999999999999832222111 1246788888888
Q ss_pred cCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCC
Q 039087 246 RLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSG 322 (414)
Q Consensus 246 ~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 322 (414)
+++ .++...+..+++|++|++++|+++...+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+..
T Consensus 144 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 144 ELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 888 5555544445899999999999997767779999999999999999997777778999999999999999874
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=7.4e-25 Score=207.12 Aligned_cols=223 Identities=16% Similarity=0.145 Sum_probs=140.1
Q ss_pred CCCEEECCCCcCCccCcc---ccCCCCCCCEEeCcCccCCCCCchhc--cCCCCCCEEecccccCCCCCCc----hhcc-
Q 039087 142 DVNLLHLNTNRFSGTVPE---TFKDLTSLQELDLSNNQFSGPFPLVT--LYIPNLVYLDLRFNSFSGPLPQ----DLFN- 211 (414)
Q Consensus 142 ~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~i~~~~p~----~~~~- 211 (414)
.++.+++.++.++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+. .+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 456666666655421100 01123456666666666666666655 6666667777776666644331 1122
Q ss_pred cccccccccccccccccCcccCC-CCCCEEEcccCcCCCC--Cchhh-hhcccCCcEEEccCCcCcccCcc----ccCCC
Q 039087 212 KKLDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGS--IPASF-GITNSKLKEILFLNNQLTGCIPE----GVGLF 283 (414)
Q Consensus 212 ~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~--~p~~~-~~~~~~L~~L~Ls~N~l~~~~~~----~~~~l 283 (414)
.+|++|++++|.+.+..+..+.. .+|++|++++|++.+. ++... ...+++|++|++++|+++ .++. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence 23666777777666555555544 4577777777776532 21111 122467888888888876 2232 24567
Q ss_pred CCCCEEEccCCCCCCCCcccccCC---CCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcE
Q 039087 284 SEMQVFDVSFNSLMGHLPDTISCM---SDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVG 360 (414)
Q Consensus 284 ~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~ 360 (414)
++|++|+|++|++++..|..+..+ ++|++|+|++|+|+ .+|..+. ++|++|+|++|+|++++. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~--~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ--PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC--TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch--hhhCCCccE
Confidence 788888888888887667666655 58888888888888 6676653 688888888888887532 456677888
Q ss_pred EEecCCCCCC
Q 039087 361 FDFSANCIPG 370 (414)
Q Consensus 361 L~ls~N~l~~ 370 (414)
|++++|+|+.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 8888888865
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=1.3e-23 Score=198.39 Aligned_cols=195 Identities=16% Similarity=0.223 Sum_probs=112.6
Q ss_pred CCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcc-cccccc
Q 039087 139 LLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFN-KKLDAI 217 (414)
Q Consensus 139 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~-~~L~~L 217 (414)
.+++|++|++++|.++ .++ .+..+++|++|+|++|.+++. +. +..+++|++|++++|+++ .++ .+.. .+|++|
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEE
Confidence 3445555555555554 233 344555555555555555532 22 555555555555555554 222 1222 124444
Q ss_pred cccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCC
Q 039087 218 FVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLM 297 (414)
Q Consensus 218 ~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 297 (414)
++++|.+++ ++..-...+|++|++++|+++ .++. +.. +++|++|++++|++++ ++. +..+++|++|++++|.++
T Consensus 113 ~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~-~~~~-l~~-l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITD-VTPLAGLSNLQVLYLDLNQIT-NISP-LAG-LTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCC-CGGGTTCTTCCEEECCSSCCC-CCGG-GGG-CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCC-chhhcCCCCCCEEECCCCccC-cCcc-ccC-CCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC
Confidence 444444432 232222356778888888777 3443 333 4778888888887774 333 777777888888888777
Q ss_pred CCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccch
Q 039087 298 GHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQ 349 (414)
Q Consensus 298 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 349 (414)
+..+ +..+++|++|++++|++++. + .+..+++|++|++++|.+++.+.
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred cChh--hcCCCCCCEEEccCCccCcc-c-cccCCCCCCEEEccCCeeecCCe
Confidence 4332 66777788888888877743 3 26677778888888877776543
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=6.3e-24 Score=196.96 Aligned_cols=201 Identities=18% Similarity=0.150 Sum_probs=102.8
Q ss_pred cCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhccccccc
Q 039087 137 LSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDA 216 (414)
Q Consensus 137 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~ 216 (414)
+..+++|+.|++++|.++ .++ .+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+...
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l---- 108 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKL---- 108 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTC----
T ss_pred cccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCC----
Confidence 445666777777777766 222 35666777777777777764 2 356667777777777777663222222211
Q ss_pred ccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCC
Q 039087 217 IFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSL 296 (414)
Q Consensus 217 L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 296 (414)
.+|++|++++|+++ .++...+..+++|++|++++|++++..+..|..+++|++|++++|++
T Consensus 109 ------------------~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 109 ------------------TNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp ------------------TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ------------------cCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence 23344444444444 22222111124455555555555543334444555555555555555
Q ss_pred CCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCC
Q 039087 297 MGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 297 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~ 371 (414)
++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+ +++.++++.|.++|.
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGV 237 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGG
T ss_pred CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCc
Confidence 54444444555555555555555554444444555555555555555543322 244444555555543
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=8.8e-26 Score=215.53 Aligned_cols=258 Identities=16% Similarity=0.094 Sum_probs=203.9
Q ss_pred CCCceeeCCCCCCCCcEEEEEcCCCCCCCccccccCCC--CCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCC
Q 039087 103 SYKGIFCSDLGAQGPVVAGIDLNHANLQGNLVKELSLL--TDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGP 180 (414)
Q Consensus 103 ~~~gv~c~~~~~~~~~l~~L~L~~n~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 180 (414)
.|..+.|+ +..++.+|++++.+. +..+..+ ++++.|++++|.+++..+. +..+++|++|+|++|.+++.
T Consensus 38 ~W~~~~~~-----~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 38 RWYRLASD-----ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp HHHHHHTC-----STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHhcC-----chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 48888775 345789999999886 4556666 8999999999999976665 56799999999999999865
Q ss_pred -CchhccCCCCCCEEecccccCCCCCCchhcccc-ccccccccc-ccccc-cCcccC-CCCCCEEEcccC-cCCCC-Cch
Q 039087 181 -FPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKK-LDAIFVNNN-QFSGE-LPQNLG-NSPASVINLANN-RLSGS-IPA 253 (414)
Q Consensus 181 -~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~l~~n-~l~~~-~~~~~~-~~~L~~L~ls~N-~l~~~-~p~ 253 (414)
++..+..+++|++|++++|.+++..+..+.... |++|++++| .+++. ++..+. ..+|++|++++| .+++. ++.
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 788899999999999999999877777776654 999999999 67652 444343 367999999999 88854 455
Q ss_pred hhhhccc-CCcEEEccCC--cCc-ccCccccCCCCCCCEEEccCCC-CCCCCcccccCCCCCcEEEcccCC-CCCCCchh
Q 039087 254 SFGITNS-KLKEILFLNN--QLT-GCIPEGVGLFSEMQVFDVSFNS-LMGHLPDTISCMSDIEILNLAHNQ-LSGELPDL 327 (414)
Q Consensus 254 ~~~~~~~-~L~~L~Ls~N--~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~ 327 (414)
.+.. ++ +|++|++++| .++ ..++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......
T Consensus 189 ~~~~-l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 189 AVAH-VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp HHHH-SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred HHHh-cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 5555 47 9999999999 455 4567777889999999999999 777778889999999999999995 43222236
Q ss_pred hhCCCCCCeEecccccCcccchhhhhhc-ccCcEEEecCCCCCCCCCC
Q 039087 328 VCSLRTLMNLTVAFNFFSGFSQECARLL-IRNVGFDFSANCIPGRDMQ 374 (414)
Q Consensus 328 l~~l~~L~~L~L~~N~l~~~~~~~~~~~-~~L~~L~ls~N~l~~~~~~ 374 (414)
+..+++|++|++++| ++.. .+..+ ..+..|++++|++++..+.
T Consensus 268 l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 268 LGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred HhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 788999999999999 5443 23322 3467788999999997543
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.2e-24 Score=205.60 Aligned_cols=224 Identities=19% Similarity=0.223 Sum_probs=175.0
Q ss_pred CcEEEEEcCCCCCCCcccc---ccCCCCCCCEEECCCCcCCccCcccc--CCCCCCCEEeCcCccCCCCCc----hhccC
Q 039087 117 PVVAGIDLNHANLQGNLVK---ELSLLTDVNLLHLNTNRFSGTVPETF--KDLTSLQELDLSNNQFSGPFP----LVTLY 187 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~ 187 (414)
.+++.+++.++.+...... .+..+++|++|++++|++++..|..+ ..+++|++|+|++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3467888888877532211 12235679999999999998888887 889999999999999997655 34557
Q ss_pred CCCCCEEecccccCCCCCCchhcccc-cccccccccccccc--cCccc---CCCCCCEEEcccCcCCCCCchh---hhhc
Q 039087 188 IPNLVYLDLRFNSFSGPLPQDLFNKK-LDAIFVNNNQFSGE--LPQNL---GNSPASVINLANNRLSGSIPAS---FGIT 258 (414)
Q Consensus 188 l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~l~~n~l~~~--~~~~~---~~~~L~~L~ls~N~l~~~~p~~---~~~~ 258 (414)
+++|++|+|++|++++..+..+.... |++|++++|++.+. ++... ...+|++|++++|+++ .++.. ++..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 89999999999999866666665554 99999999998642 22222 2356999999999997 44443 3333
Q ss_pred ccCCcEEEccCCcCcccCccccCCC---CCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCC
Q 039087 259 NSKLKEILFLNNQLTGCIPEGVGLF---SEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLM 335 (414)
Q Consensus 259 ~~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 335 (414)
+++|++|+|++|++++..|..+..+ ++|++|+|++|+|+ .+|..+. ++|++|+|++|+|++ +|. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCcc
Confidence 5899999999999998778777766 69999999999999 6777664 799999999999994 444 67889999
Q ss_pred eEecccccCcc
Q 039087 336 NLTVAFNFFSG 346 (414)
Q Consensus 336 ~L~L~~N~l~~ 346 (414)
+|+|++|+|+.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999875
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=2.5e-25 Score=216.80 Aligned_cols=250 Identities=16% Similarity=0.203 Sum_probs=196.5
Q ss_pred CcEEEEEcCCCCCCCccc----cccCCCCCCCEEECCCC---cCCccCcccc-------CCCCCCCEEeCcCccCCC---
Q 039087 117 PVVAGIDLNHANLQGNLV----KELSLLTDVNLLHLNTN---RFSGTVPETF-------KDLTSLQELDLSNNQFSG--- 179 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n---~l~~~~p~~~-------~~l~~L~~L~Ls~N~l~~--- 179 (414)
++++.|+|++|.+....+ ..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++|.++.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 569999999999987644 44778999999999996 4455556554 789999999999999997
Q ss_pred -CCchhccCCCCCCEEecccccCCCCCCchhcc--------------cccccccccccccc-cccC---cccC-CCCCCE
Q 039087 180 -PFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFN--------------KKLDAIFVNNNQFS-GELP---QNLG-NSPASV 239 (414)
Q Consensus 180 -~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~--------------~~L~~L~l~~n~l~-~~~~---~~~~-~~~L~~ 239 (414)
.++..+..+++|++|+|++|.++...+..+.. .+|++|++++|.++ ..++ ..+. ..+|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 47788899999999999999997433333332 46999999999997 3344 2232 357999
Q ss_pred EEcccCcCCCC-----CchhhhhcccCCcEEEccCCcCc----ccCccccCCCCCCCEEEccCCCCCCC----Cccccc-
Q 039087 240 INLANNRLSGS-----IPASFGITNSKLKEILFLNNQLT----GCIPEGVGLFSEMQVFDVSFNSLMGH----LPDTIS- 305 (414)
Q Consensus 240 L~ls~N~l~~~-----~p~~~~~~~~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~- 305 (414)
|++++|+++.. ++..+.. +++|++|+|++|.++ ..++..+..+++|++|+|++|.|++. ++..+.
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~-~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAY-CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGG-CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EECcCCCCCHhHHHHHHHHHhhc-CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 99999998732 2224444 489999999999996 56788899999999999999999865 566663
Q ss_pred -CCCCCcEEEcccCCCCC----CCchhh-hCCCCCCeEecccccCcccch---hhhhhcccCcEEEecCCC
Q 039087 306 -CMSDIEILNLAHNQLSG----ELPDLV-CSLRTLMNLTVAFNFFSGFSQ---ECARLLIRNVGFDFSANC 367 (414)
Q Consensus 306 -~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~L~~N~l~~~~~---~~~~~~~~L~~L~ls~N~ 367 (414)
.+++|++|+|++|.|++ .+|..+ .++++|++|+|++|.+++..+ .....++.++.+++..+.
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~d 341 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELD 341 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCCC
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhcc
Confidence 48999999999999996 378777 668999999999999998874 344445556666665543
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.5e-23 Score=192.89 Aligned_cols=206 Identities=20% Similarity=0.183 Sum_probs=162.6
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
..+++.|+++++.+... ..+..+++|++|++++|++++ + ..+..+++|++|+|++|.+++..+..|..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 46799999999998743 458899999999999999985 3 4789999999999999999987777889999999999
Q ss_pred cccccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCccc
Q 039087 196 LRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGC 275 (414)
Q Consensus 196 Ls~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~ 275 (414)
+++|++++..+..+.. ..+|++|++++|+++ .++...+..+++|++|++++|++++.
T Consensus 116 L~~n~l~~~~~~~~~~----------------------l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDK----------------------LTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp CTTSCCCCCCTTTTTT----------------------CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCcCCccCHHHhcc----------------------CCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCcc
Confidence 9999998332222211 235677777777777 44444333347888888888888866
Q ss_pred CccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhc
Q 039087 276 IPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLL 355 (414)
Q Consensus 276 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~ 355 (414)
.+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+. +++|+.|+++.|.+++.+|..+..+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 666778888899999999988877777788888899999999888743 4568888888999888887765554
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=2.4e-23 Score=189.16 Aligned_cols=195 Identities=10% Similarity=0.073 Sum_probs=102.0
Q ss_pred CCCEEECCCCcCCccCccccCCCCCCCEEeCcCcc-CCCCCchhccCCCCCCEEeccc-ccCCCCCCc-hhccccccccc
Q 039087 142 DVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQ-FSGPFPLVTLYIPNLVYLDLRF-NSFSGPLPQ-DLFNKKLDAIF 218 (414)
Q Consensus 142 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~i~~~~p~-~~~~~~L~~L~ 218 (414)
+|++|++++|+|++..+..|.++++|++|++++|+ ++...+..|..+++|++|++++ |.++ .++. .+...
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l------ 104 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKEL------ 104 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECC------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCC------
Confidence 66677777777765555566667777777777775 6644445666677777777776 6666 3322 12111
Q ss_pred ccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCc---EEEccCC-cCcccCccccCCCCCCC-EEEccC
Q 039087 219 VNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLK---EILFLNN-QLTGCIPEGVGLFSEMQ-VFDVSF 293 (414)
Q Consensus 219 l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~---~L~Ls~N-~l~~~~~~~~~~l~~L~-~L~Ls~ 293 (414)
.+|++|++++|+++ .+|. +.. +++|+ +|++++| +++...+..|..+++|+ +|++++
T Consensus 105 ----------------~~L~~L~l~~n~l~-~lp~-~~~-l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 105 ----------------PLLKFLGIFNTGLK-MFPD-LTK-VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp ----------------TTCCEEEEEEECCC-SCCC-CTT-CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred ----------------CCCCEEeCCCCCCc-cccc-ccc-ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 22333333333333 2332 111 23344 5555555 55544444455555555 566666
Q ss_pred CCCCCCCcccccCCCCCcEEEcccCC-CCCCCchhhhCC-CCCCeEecccccCcccchhhhhhcccCcEEEecCC
Q 039087 294 NSLMGHLPDTISCMSDIEILNLAHNQ-LSGELPDLVCSL-RTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSAN 366 (414)
Q Consensus 294 N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N 366 (414)
|+++...+..+.. ++|++|++++|+ ++...+..|..+ ++|++|++++|+|+.+++. .+++|+.|+++++
T Consensus 166 n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 166 NGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 5555222222322 556666666663 553334445555 5666666666666555443 2334555555544
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=1.9e-22 Score=184.70 Aligned_cols=180 Identities=16% Similarity=0.157 Sum_probs=142.5
Q ss_pred CCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccccccccccc
Q 039087 142 DVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNN 221 (414)
Q Consensus 142 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l~~ 221 (414)
..++++++++.++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|.+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------ 73 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT------------------ 73 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC------------------
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc------------------
Confidence 3566777777776 5555443 467777777777776666666666677777776666652
Q ss_pred cccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCc
Q 039087 222 NQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLP 301 (414)
Q Consensus 222 n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 301 (414)
..+..+.. +++|++|++++|++++..+..|..+++|++|+|++|+|++..+
T Consensus 74 ----------------------------~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 124 (251)
T 3m19_A 74 ----------------------------LSAGVFDD-LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124 (251)
T ss_dssp ----------------------------CCTTTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ----------------------------cCHhHhcc-CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh
Confidence 11122222 3678888888888887667788999999999999999997777
Q ss_pred ccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCC
Q 039087 302 DTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 302 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~ 371 (414)
..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|+++++..+..+++|++|++++|++++.
T Consensus 125 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7789999999999999999966666899999999999999999999988899999999999999999886
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=2.1e-25 Score=222.02 Aligned_cols=85 Identities=21% Similarity=0.274 Sum_probs=46.0
Q ss_pred cEEEEEcCCCCCCC----ccccccCCCCCCCEEECCCCcCCccCcccc-----CCCCCCCEEeCcCccCCCC----Cchh
Q 039087 118 VVAGIDLNHANLQG----NLVKELSLLTDVNLLHLNTNRFSGTVPETF-----KDLTSLQELDLSNNQFSGP----FPLV 184 (414)
Q Consensus 118 ~l~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~ 184 (414)
++++|+|++|.+.. .++..+..+++|++|+|++|.+++..+..+ ...++|++|+|++|.+++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 46666666666653 335556666666666666666653322221 1234566666666655542 2334
Q ss_pred ccCCCCCCEEecccccCC
Q 039087 185 TLYIPNLVYLDLRFNSFS 202 (414)
Q Consensus 185 ~~~l~~L~~L~Ls~N~i~ 202 (414)
+..+++|++|++++|.++
T Consensus 166 l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHCTTCCEEECCSSBCH
T ss_pred HhhCCCCCEEECcCCCcc
Confidence 444555666666665554
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=2.4e-25 Score=221.72 Aligned_cols=255 Identities=16% Similarity=0.092 Sum_probs=198.3
Q ss_pred CCcEEEEEcCCCCCCCcccccc-----CCCCCCCEEECCCCcCCcc----CccccCCCCCCCEEeCcCccCCCCCchhcc
Q 039087 116 GPVVAGIDLNHANLQGNLVKEL-----SLLTDVNLLHLNTNRFSGT----VPETFKDLTSLQELDLSNNQFSGPFPLVTL 186 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 186 (414)
.+++++|+|++|.+.+..+..+ ...++|++|+|++|++++. ++..+..+++|++|++++|.+++..+..+.
T Consensus 112 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 191 (461)
T 1z7x_W 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC 191 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHH
Confidence 5689999999999876544433 2367899999999999864 355667789999999999998755444443
Q ss_pred -----CCCCCCEEecccccCCCC----CCchhcc-cccccccccccccccccC----ccc--CCCCCCEEEcccCcCCCC
Q 039087 187 -----YIPNLVYLDLRFNSFSGP----LPQDLFN-KKLDAIFVNNNQFSGELP----QNL--GNSPASVINLANNRLSGS 250 (414)
Q Consensus 187 -----~l~~L~~L~Ls~N~i~~~----~p~~~~~-~~L~~L~l~~n~l~~~~~----~~~--~~~~L~~L~ls~N~l~~~ 250 (414)
..++|++|++++|.++.. ++..+.. .+|++|++++|.++.... ..+ ...+|++|++++|.++..
T Consensus 192 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~ 271 (461)
T 1z7x_W 192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 271 (461)
T ss_dssp HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHH
Confidence 367999999999999853 3555544 349999999999875321 222 246799999999999853
Q ss_pred ----CchhhhhcccCCcEEEccCCcCcccCccccC-----CCCCCCEEEccCCCCCCC----CcccccCCCCCcEEEccc
Q 039087 251 ----IPASFGITNSKLKEILFLNNQLTGCIPEGVG-----LFSEMQVFDVSFNSLMGH----LPDTISCMSDIEILNLAH 317 (414)
Q Consensus 251 ----~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~ 317 (414)
++..+... ++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++
T Consensus 272 ~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 350 (461)
T 1z7x_W 272 GCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350 (461)
T ss_dssp HHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccC
Confidence 56665554 8999999999999754333332 236999999999999865 466677789999999999
Q ss_pred CCCCCCCchhhhC-----CCCCCeEecccccCcc----cchhhhhhcccCcEEEecCCCCCCC
Q 039087 318 NQLSGELPDLVCS-----LRTLMNLTVAFNFFSG----FSQECARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 318 N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~----~~~~~~~~~~~L~~L~ls~N~l~~~ 371 (414)
|.+++..+..+.. .++|++|+|++|.+++ .++..+..+++|++|++++|+|++.
T Consensus 351 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 9998655554442 6799999999999997 5677778889999999999999875
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.89 E-value=1.5e-22 Score=205.45 Aligned_cols=197 Identities=26% Similarity=0.339 Sum_probs=137.0
Q ss_pred CCCce-eeCCCCCCCCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCC
Q 039087 103 SYKGI-FCSDLGAQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPF 181 (414)
Q Consensus 103 ~~~gv-~c~~~~~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 181 (414)
.|.++ .|.. .+++.|+|++|++++ +|..+ +++|++|+|++|+|+ .+| ..+++|++|+|++|+|++ +
T Consensus 49 ~~~~l~~C~~-----~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-i 115 (571)
T 3cvr_A 49 AVSLLKECLI-----NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-L 115 (571)
T ss_dssp HHHHHHHHHH-----TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-C
T ss_pred hhhhcccccc-----CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-c
Confidence 57777 5642 367888888888876 45444 367888888888887 566 346777888888887774 5
Q ss_pred chhccCCCCCCEEecccccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccC
Q 039087 182 PLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSK 261 (414)
Q Consensus 182 p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~ 261 (414)
|. +.. +|++|+|++|+|++ +|. ...+|++|++++|+++ .+|. .+++
T Consensus 116 p~-l~~--~L~~L~Ls~N~l~~-lp~-------------------------~l~~L~~L~Ls~N~l~-~lp~----~l~~ 161 (571)
T 3cvr_A 116 PE-LPA--SLKHLDVDNNQLTM-LPE-------------------------LPALLEYINADNNQLT-MLPE----LPTS 161 (571)
T ss_dssp CC-CCT--TCCEEECCSSCCSC-CCC-------------------------CCTTCCEEECCSSCCS-CCCC----CCTT
T ss_pred ch-hhc--CCCEEECCCCcCCC-CCC-------------------------cCccccEEeCCCCccC-cCCC----cCCC
Confidence 65 443 77777777777763 443 2345667777777766 3555 2467
Q ss_pred CcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCC-------cEEEcccCCCCCCCchhhhCCCCC
Q 039087 262 LKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDI-------EILNLAHNQLSGELPDLVCSLRTL 334 (414)
Q Consensus 262 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L 334 (414)
|++|++++|++++ +|. |. ++|++|+|++|+|+ .+|. |.. +| ++|+|++|+|+ .+|..+..+++|
T Consensus 162 L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L 232 (571)
T 3cvr_A 162 LEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPT 232 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTT
T ss_pred cCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCC
Confidence 7788888887774 555 54 77888888888887 5555 443 56 88888888888 677777778888
Q ss_pred CeEecccccCcccchhhhhhc
Q 039087 335 MNLTVAFNFFSGFSQECARLL 355 (414)
Q Consensus 335 ~~L~L~~N~l~~~~~~~~~~~ 355 (414)
++|+|++|.|++.+|..+..+
T Consensus 233 ~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 233 CTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp EEEECCSSSCCHHHHHHHHHH
T ss_pred CEEEeeCCcCCCcCHHHHHHh
Confidence 888888888888777766554
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=4.5e-22 Score=187.83 Aligned_cols=194 Identities=16% Similarity=0.242 Sum_probs=161.8
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
.+++++|+++++.+... + .+..+++|++|+|++|++++. +. +..+++|++|+|++|.+++ ++ .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence 45799999999999864 3 688999999999999999954 44 9999999999999999995 44 688999999999
Q ss_pred cccccCCCCCCchhcc-cccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcc
Q 039087 196 LRFNSFSGPLPQDLFN-KKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTG 274 (414)
Q Consensus 196 Ls~N~i~~~~p~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~ 274 (414)
+++|+++ .++. +.. .+|++|++++|.+++. +..-...+|++|++++|+++ .++. +.. +++|++|++++|++++
T Consensus 114 l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~-~~~~-l~~-l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 114 LTSTQIT-DVTP-LAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVS-DLTP-LAN-LSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTSCCC-CCGG-GTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEECCSSCCCC
T ss_pred CCCCCCC-Cchh-hcCCCCCCEEECCCCccCcC-ccccCCCCccEEEccCCcCC-CChh-hcC-CCCCCEEECCCCccCc
Confidence 9999998 4554 444 4499999999999854 44334467999999999999 4555 444 5899999999999985
Q ss_pred cCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCch
Q 039087 275 CIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPD 326 (414)
Q Consensus 275 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 326 (414)
. +. +..+++|++|++++|++++.. .+..+++|++|++++|.++ ..|.
T Consensus 188 ~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~-~~~~ 234 (308)
T 1h6u_A 188 I-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT-NQPV 234 (308)
T ss_dssp C-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE-CCCE
T ss_pred C-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee-cCCe
Confidence 4 33 889999999999999999554 3889999999999999998 4443
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.2e-22 Score=184.59 Aligned_cols=199 Identities=16% Similarity=0.215 Sum_probs=159.1
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCc-CCccCccccCCCCCCCEEeCcC-ccCCCCCchhccCCCCCCE
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNR-FSGTVPETFKDLTSLQELDLSN-NQFSGPFPLVTLYIPNLVY 193 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~ 193 (414)
+..++.|++++|++++..+..|..+++|++|++++|+ ++...+..|.++++|++|++++ |+++...+..|..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 4579999999999998777789999999999999997 8866666889999999999998 9999666678899999999
Q ss_pred EecccccCCCCCCchhcccccccccccccccccccCcccCCCCCC---EEEcccC-cCCCCCchhhhhcccCCc-EEEcc
Q 039087 194 LDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPAS---VINLANN-RLSGSIPASFGITNSKLK-EILFL 268 (414)
Q Consensus 194 L~Ls~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~---~L~ls~N-~l~~~~p~~~~~~~~~L~-~L~Ls 268 (414)
|++++|+++ .+|. + ....+|+ +|++++| +++ .++...+..+++|+ +|+++
T Consensus 110 L~l~~n~l~-~lp~-~----------------------~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 110 LGIFNTGLK-MFPD-L----------------------TKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEEEECCC-SCCC-C----------------------TTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECC
T ss_pred EeCCCCCCc-cccc-c----------------------ccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcC
Confidence 999999988 3442 1 1112344 9999999 888 56655444458999 99999
Q ss_pred CCcCcccCccccCCCCCCCEEEccCCC-CCCCCcccccCC-CCCcEEEcccCCCCCCCchhhhCCCCCCeEeccccc
Q 039087 269 NNQLTGCIPEGVGLFSEMQVFDVSFNS-LMGHLPDTISCM-SDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNF 343 (414)
Q Consensus 269 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 343 (414)
+|+++ .+|......++|++|++++|+ ++...+..|..+ ++|++|++++|+|+ .+|.. .+++|++|+++++.
T Consensus 165 ~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 165 NNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp SCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred CCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 99998 445433333889999999995 986667788888 99999999999998 55554 67889999998764
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=5e-24 Score=205.88 Aligned_cols=228 Identities=17% Similarity=0.157 Sum_probs=182.9
Q ss_pred EEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCc----hhccCCC-CCCEEecccccCCCCCCchhcc------cc
Q 039087 145 LLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFP----LVTLYIP-NLVYLDLRFNSFSGPLPQDLFN------KK 213 (414)
Q Consensus 145 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~i~~~~p~~~~~------~~ 213 (414)
+++++.|.+++.+|..+...++|++|+|++|.+++..+ ..+..++ +|++|+|++|.++...+..+.. .+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 57899999999888877777789999999999997666 7788888 9999999999999766766665 45
Q ss_pred cccccccccccccccCcccCC------CCCCEEEcccCcCCCCCchhhhhc----ccCCcEEEccCCcCcccCc----cc
Q 039087 214 LDAIFVNNNQFSGELPQNLGN------SPASVINLANNRLSGSIPASFGIT----NSKLKEILFLNNQLTGCIP----EG 279 (414)
Q Consensus 214 L~~L~l~~n~l~~~~~~~~~~------~~L~~L~ls~N~l~~~~p~~~~~~----~~~L~~L~Ls~N~l~~~~~----~~ 279 (414)
|++|++++|.+++..+..+.. .+|++|++++|++++..+..+... .++|++|++++|++++... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999999766553322 579999999999996665555432 3689999999999985433 34
Q ss_pred cCCCC-CCCEEEccCCCCCCCCcccc----cCC-CCCcEEEcccCCCCCC----CchhhhC-CCCCCeEecccccCcccc
Q 039087 280 VGLFS-EMQVFDVSFNSLMGHLPDTI----SCM-SDIEILNLAHNQLSGE----LPDLVCS-LRTLMNLTVAFNFFSGFS 348 (414)
Q Consensus 280 ~~~l~-~L~~L~Ls~N~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~~----~p~~l~~-l~~L~~L~L~~N~l~~~~ 348 (414)
+..++ +|++|+|++|++++..+..+ ..+ ++|++|+|++|.|++. ++..+.. .++|++|+|++|.|++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45555 99999999999987766544 444 5999999999999953 5566665 459999999999999876
Q ss_pred hh----hhhhcccCcEEEecCCCCCCCC
Q 039087 349 QE----CARLLIRNVGFDFSANCIPGRD 372 (414)
Q Consensus 349 ~~----~~~~~~~L~~L~ls~N~l~~~~ 372 (414)
.. .+..+++|++|++++|.+.++.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~ 269 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMS 269 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccC
Confidence 63 4456688999999999966553
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=1.2e-22 Score=206.15 Aligned_cols=168 Identities=27% Similarity=0.425 Sum_probs=116.4
Q ss_pred CCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEe
Q 039087 116 GPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLD 195 (414)
Q Consensus 116 ~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 195 (414)
.++++.|+|++|+++ .+| ..+++|++|+|++|+|++ +|. |.+ +|++|+|++|+|++ +|. .+++|++|+
T Consensus 79 ~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 79 PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYIN 146 (571)
T ss_dssp CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEe
Confidence 467999999999999 455 568999999999999996 777 665 99999999999996 666 689999999
Q ss_pred cccccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCccc
Q 039087 196 LRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGC 275 (414)
Q Consensus 196 Ls~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~ 275 (414)
|++|.|+ .+|. ...+|++|++++|.+++ +|. +. ++|++|+|++|+|+ .
T Consensus 147 Ls~N~l~-~lp~--~l~~L~~L~Ls~N~L~~-lp~-l~--------------------------~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 147 ADNNQLT-MLPE--LPTSLEVLSVRNNQLTF-LPE-LP--------------------------ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CCSSCCS-CCCC--CCTTCCEEECCSSCCSC-CCC-CC--------------------------TTCCEEECCSSCCS-S
T ss_pred CCCCccC-cCCC--cCCCcCEEECCCCCCCC-cch-hh--------------------------CCCCEEECcCCCCC-c
Confidence 9999998 3554 12235555555555542 333 22 44555555555554 3
Q ss_pred CccccCCCCCC-------CEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCC
Q 039087 276 IPEGVGLFSEM-------QVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSL 331 (414)
Q Consensus 276 ~~~~~~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 331 (414)
+|. |.. +| ++|+|++|+|+ .+|..+..+++|++|+|++|.|++.+|..+..+
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 343 322 34 77777777776 466666667777777777777776666666544
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=1.4e-22 Score=194.82 Aligned_cols=235 Identities=16% Similarity=0.164 Sum_probs=179.0
Q ss_pred CCCCCceeeCCCC------CCCCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCc-cccCCCCCCCE-EeC
Q 039087 101 VCSYKGIFCSDLG------AQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVP-ETFKDLTSLQE-LDL 172 (414)
Q Consensus 101 ~c~~~gv~c~~~~------~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~L 172 (414)
.|.+..|.|.... ..+.++++|+|++|+|+...+..|.++++|++|+|++|++.+.++ .+|.++++|++ +++
T Consensus 8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 3778889996532 124679999999999997766789999999999999999876555 46889988876 566
Q ss_pred cCccCCCCCchhccCCCCCCEEecccccCCCCCCchhc-c-cccccccccc-cccccccCcccCC--CCCCEEEcccCcC
Q 039087 173 SNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLF-N-KKLDAIFVNN-NQFSGELPQNLGN--SPASVINLANNRL 247 (414)
Q Consensus 173 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~-~-~~L~~L~l~~-n~l~~~~~~~~~~--~~L~~L~ls~N~l 247 (414)
+.|+++...|..|..+++|++|++++|+++ .+|...+ . .++..+++.+ +.+....+..+.. ..+++|++++|+|
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 779999777889999999999999999998 5554333 2 3477888865 5565333333433 3588999999999
Q ss_pred CCCCchhhhhcccCCcEEEccC-CcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccC-CCCCCCc
Q 039087 248 SGSIPASFGITNSKLKEILFLN-NQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHN-QLSGELP 325 (414)
Q Consensus 248 ~~~~p~~~~~~~~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p 325 (414)
+ .++...+.. .+|++|++++ |.++...+..|..+++|++|||++|+|+...+..| .+|++|.+.++ .++ .+|
T Consensus 167 ~-~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~-~lP 240 (350)
T 4ay9_X 167 Q-EIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLK-KLP 240 (350)
T ss_dssp C-EECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCC-CCC
T ss_pred c-CCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcC-cCC
Confidence 9 788777765 6899999985 66664434578999999999999999995444444 45666665544 454 677
Q ss_pred hhhhCCCCCCeEeccccc
Q 039087 326 DLVCSLRTLMNLTVAFNF 343 (414)
Q Consensus 326 ~~l~~l~~L~~L~L~~N~ 343 (414)
.+..+++|+++++.++.
T Consensus 241 -~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 241 -TLEKLVALMEASLTYPS 257 (350)
T ss_dssp -CTTTCCSCCEEECSCHH
T ss_pred -CchhCcChhhCcCCCCc
Confidence 47889999999998764
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.9e-21 Score=172.74 Aligned_cols=184 Identities=23% Similarity=0.267 Sum_probs=111.6
Q ss_pred CCCCCceeeCCCCCCCCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCC
Q 039087 101 VCSYKGIFCSDLGAQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGP 180 (414)
Q Consensus 101 ~c~~~gv~c~~~~~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 180 (414)
.|.|.++.|... .++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|++++.
T Consensus 6 ~C~~~~v~c~~~---------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 67 (208)
T 2o6s_A 6 SCSGTTVECYSQ---------------GRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67 (208)
T ss_dssp EEETTEEECCSS---------------CCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred EECCCEEEecCC---------------Ccc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc
Confidence 477888888652 233 223222 45788999999998866666788889999999999999866
Q ss_pred CchhccCCCCCCEEecccccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhccc
Q 039087 181 FPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNS 260 (414)
Q Consensus 181 ~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~ 260 (414)
.+..|..+++|++|++++|+++ .++...+. ...+|++|++++|+++ .++...+..++
T Consensus 68 ~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~---------------------~l~~L~~L~L~~N~l~-~~~~~~~~~l~ 124 (208)
T 2o6s_A 68 PNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFD---------------------KLTQLKELALNTNQLQ-SLPDGVFDKLT 124 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTT---------------------TCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred ChhhcCCCCCcCEEECCCCcCC-ccCHhHhc---------------------CccCCCEEEcCCCcCc-ccCHhHhccCC
Confidence 6666788889999999988887 33221100 1123455555555554 23332222235
Q ss_pred CCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCC
Q 039087 261 KLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLR 332 (414)
Q Consensus 261 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 332 (414)
+|++|++++|++++..+..|..+++|++|++++|.+.+ .+++|++|+++.|++++.+|..+..++
T Consensus 125 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 125 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred cCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 56666666666554444445556666666666665542 233555566666666655655554443
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=9.2e-23 Score=194.54 Aligned_cols=225 Identities=14% Similarity=0.121 Sum_probs=182.6
Q ss_pred CCCCEEECCCCcCCccCccccCCC--CCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCC-CCchhcccc-ccc
Q 039087 141 TDVNLLHLNTNRFSGTVPETFKDL--TSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGP-LPQDLFNKK-LDA 216 (414)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~-~p~~~~~~~-L~~ 216 (414)
..++.+++++|.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+++. ++..+.... |++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34889999999887 4556666 8999999999999977665 55799999999999998754 666665544 999
Q ss_pred ccccccccccccCcccCC-CCCCEEEcccC-cCCCC-CchhhhhcccCCcEEEccCC-cCccc-CccccCCCC-CCCEEE
Q 039087 217 IFVNNNQFSGELPQNLGN-SPASVINLANN-RLSGS-IPASFGITNSKLKEILFLNN-QLTGC-IPEGVGLFS-EMQVFD 290 (414)
Q Consensus 217 L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N-~l~~~-~p~~~~~~~~~L~~L~Ls~N-~l~~~-~~~~~~~l~-~L~~L~ 290 (414)
|++++|.+++..+..+.. .+|++|++++| .+++. ++..+.. +++|++|++++| .+++. ++..+..++ +|++|+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc-CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 999999998777776655 57999999999 67753 5555555 489999999999 88854 567788899 999999
Q ss_pred ccCC--CCC-CCCcccccCCCCCcEEEcccCC-CCCCCchhhhCCCCCCeEeccccc-CcccchhhhhhcccCcEEEecC
Q 039087 291 VSFN--SLM-GHLPDTISCMSDIEILNLAHNQ-LSGELPDLVCSLRTLMNLTVAFNF-FSGFSQECARLLIRNVGFDFSA 365 (414)
Q Consensus 291 Ls~N--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~L~~L~ls~ 365 (414)
+++| .++ ..++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 9999 555 3567777889999999999999 777778889999999999999995 3333233567789999999999
Q ss_pred CCCCCC
Q 039087 366 NCIPGR 371 (414)
Q Consensus 366 N~l~~~ 371 (414)
| ++..
T Consensus 282 ~-i~~~ 286 (336)
T 2ast_B 282 I-VPDG 286 (336)
T ss_dssp S-SCTT
T ss_pred c-cCHH
Confidence 9 5543
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=5.8e-21 Score=183.48 Aligned_cols=236 Identities=13% Similarity=0.107 Sum_probs=175.0
Q ss_pred EEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCc-hhccCCCCCCE-Eeccc
Q 039087 121 GIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFP-LVTLYIPNLVY-LDLRF 198 (414)
Q Consensus 121 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~Ls~ 198 (414)
.++.++++++ .+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.++++|++ +.++.
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 5788889998 456655 4689999999999995555689999999999999999876665 46788988775 66778
Q ss_pred ccCCCCCCchhccc-ccccccccccccccccCcccC-CCCCCEEEccc-CcCCCCCchhh-hhcccCCcEEEccCCcCcc
Q 039087 199 NSFSGPLPQDLFNK-KLDAIFVNNNQFSGELPQNLG-NSPASVINLAN-NRLSGSIPASF-GITNSKLKEILFLNNQLTG 274 (414)
Q Consensus 199 N~i~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~ls~-N~l~~~~p~~~-~~~~~~L~~L~Ls~N~l~~ 274 (414)
|+++...|..+... +|++|++++|.+....+..+. ..++..|++.+ +++. .++... ......+++|++++|+|+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccccc-
Confidence 99984334445544 499999999999854433332 25678888866 5566 565543 333357999999999998
Q ss_pred cCccccCCCCCCCEEEccC-CCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccc-cCcccchhhh
Q 039087 275 CIPEGVGLFSEMQVFDVSF-NSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFN-FFSGFSQECA 352 (414)
Q Consensus 275 ~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~ 352 (414)
.++.......+|++|++++ |.++...+..|..+++|++|+|++|+|+ .+|.. .+.+|++|.+.++ .++.++ .+
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP--~l 242 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLP--TL 242 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCC--CT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCC--Cc
Confidence 4555555667899999985 6777555567899999999999999999 56643 3556777765554 455444 25
Q ss_pred hhcccCcEEEecCC
Q 039087 353 RLLIRNVGFDFSAN 366 (414)
Q Consensus 353 ~~~~~L~~L~ls~N 366 (414)
..+++|+.++++++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 67788999998754
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=5.4e-20 Score=172.14 Aligned_cols=176 Identities=19% Similarity=0.248 Sum_probs=113.1
Q ss_pred cCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhccccccc
Q 039087 137 LSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDA 216 (414)
Q Consensus 137 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~ 216 (414)
+..+++|++|++++|.++. ++ .+..+++|++|+|++|++++..+ +..+++|++|++++|.++ .++. +
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l------- 108 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-L------- 108 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-G-------
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-h-------
Confidence 3456777777777777763 33 36677777777777777774433 777777777777777776 2221 1
Q ss_pred ccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCC
Q 039087 217 IFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSL 296 (414)
Q Consensus 217 L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 296 (414)
....+|++|++++|+++ .++ .+.. +++|++|++++|++++. ..+..+++|++|++++|++
T Consensus 109 ---------------~~l~~L~~L~L~~n~i~-~~~-~l~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 109 ---------------KDLKKLKSLSLEHNGIS-DIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp ---------------TTCTTCCEEECTTSCCC-CCG-GGGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred ---------------ccCCCCCEEECCCCcCC-CCh-hhcC-CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 11234556666666655 232 2333 36677777777777643 4566777777777777777
Q ss_pred CCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccch
Q 039087 297 MGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQ 349 (414)
Q Consensus 297 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 349 (414)
++..+ +..+++|++|++++|.|+ .++ .+..+++|++|++++|.++..+.
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~-~l~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred ccchh--hcCCCccCEEECCCCcCC-CCh-hhccCCCCCEEECcCCcccCCcc
Confidence 74433 667777777777777777 344 36677777777777777765443
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=7.4e-20 Score=162.43 Aligned_cols=179 Identities=20% Similarity=0.193 Sum_probs=127.4
Q ss_pred CEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccccccccccccc
Q 039087 144 NLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQ 223 (414)
Q Consensus 144 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l~~n~ 223 (414)
+.++++++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|+++ .++...+
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~------------- 72 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVF------------- 72 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTT-------------
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhc-------------
Confidence 57888899888 566554 468999999999999777777899999999999999998 3332211
Q ss_pred cccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCccc
Q 039087 224 FSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDT 303 (414)
Q Consensus 224 l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 303 (414)
-...+|++|++++|+++ .++...+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..
T Consensus 73 --------~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 143 (208)
T 2o6s_A 73 --------NKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143 (208)
T ss_dssp --------TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred --------CCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHH
Confidence 01245677777777777 444443333477888888888877555556777777888888888777655556
Q ss_pred ccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhc
Q 039087 304 ISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLL 355 (414)
Q Consensus 304 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~ 355 (414)
+..+++|++|++++|.+.+ .+++|++|+++.|++++.+|..+..+
T Consensus 144 ~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp TTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred hccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 7777777888887776653 34567777777777777766554443
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=1.3e-19 Score=163.41 Aligned_cols=92 Identities=24% Similarity=0.287 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCCCceeeCCCCCCCCcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeC
Q 039087 93 LDTWVGDNVCSYKGIFCSDLGAQGPVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDL 172 (414)
Q Consensus 93 l~~w~~~~~c~~~gv~c~~~~~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 172 (414)
-..|.+...|+|.+|.|... .+. .+|..+ .++|++|+|++|+|++..+..|..+++|++|+|
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~---------------~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 71 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSK---------------RHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYL 71 (229)
T ss_dssp -CCCCTTCEEETTEEECTTS---------------CCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred hccCCCCCEEeCCEeEccCC---------------CcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEEC
Confidence 34556778899999999642 232 233322 256677777777776655666666666777777
Q ss_pred cCccCCCCCchhccCCCCCCEEecccccCC
Q 039087 173 SNNQFSGPFPLVTLYIPNLVYLDLRFNSFS 202 (414)
Q Consensus 173 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~ 202 (414)
++|+|+...+..|..+++|++|+|++|+|+
T Consensus 72 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (229)
T 3e6j_A 72 GSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCcChhhcccCCCcCEEECCCCcCC
Confidence 666666444444556666666666666554
No 99
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.83 E-value=4.7e-23 Score=209.90 Aligned_cols=203 Identities=17% Similarity=0.153 Sum_probs=135.6
Q ss_pred CCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCcc-------------CCCCCchhccCCCCCCEEe-cccccCCCC
Q 039087 139 LLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQ-------------FSGPFPLVTLYIPNLVYLD-LRFNSFSGP 204 (414)
Q Consensus 139 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~~~~l~~L~~L~-Ls~N~i~~~ 204 (414)
..++|+.|+|++|+++ .+|..+.++++|+.|++++|. +.+.+|..+..+++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 3444445555555544 444444444555555544432 2223333444444444444 3333321
Q ss_pred CCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCC
Q 039087 205 LPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFS 284 (414)
Q Consensus 205 ~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~ 284 (414)
.|+.+.+.+|.++. ++. ..|++|++++|.++ .+|. +.. +++|++|+|++|+++ .+|..|..++
T Consensus 424 --------~L~~l~l~~n~i~~-l~~----~~L~~L~Ls~n~l~-~lp~-~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~ 486 (567)
T 1dce_A 424 --------DLRSKFLLENSVLK-MEY----ADVRVLHLAHKDLT-VLCH-LEQ-LLLVTHLDLSHNRLR-ALPPALAALR 486 (567)
T ss_dssp --------HHHHHHHHHHHHHH-HHH----TTCSEEECTTSCCS-SCCC-GGG-GTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred --------hhhhhhhhcccccc-cCc----cCceEEEecCCCCC-CCcC-ccc-cccCcEeecCccccc-ccchhhhcCC
Confidence 24444455555552 221 24788999999988 5776 555 478999999999988 7788888999
Q ss_pred CCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCC-chhhhCCCCCCeEecccccCcccchh---hhhhcccCcE
Q 039087 285 EMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGEL-PDLVCSLRTLMNLTVAFNFFSGFSQE---CARLLIRNVG 360 (414)
Q Consensus 285 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~~~---~~~~~~~L~~ 360 (414)
+|++|+|++|.|++ +| .+..+++|++|+|++|+|++.. |..+..+++|++|+|++|.|++.++. .+..+++|+.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 99999999999985 66 7888899999999999998665 88888899999999999999887653 4555778888
Q ss_pred EEe
Q 039087 361 FDF 363 (414)
Q Consensus 361 L~l 363 (414)
||+
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 864
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=4.2e-20 Score=165.66 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=74.2
Q ss_pred CEEecccccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCc
Q 039087 192 VYLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQ 271 (414)
Q Consensus 192 ~~L~Ls~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~ 271 (414)
+++++++|.++ .+|..+. ..+++|++++|.+++.. +...+..+++|++|++++|+
T Consensus 14 ~~l~~s~n~l~-~iP~~~~-~~~~~L~L~~N~l~~~~-----------------------~~~~~~~l~~L~~L~L~~N~ 68 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP-QYTAELRLNNNEFTVLE-----------------------ATGIFKKLPQLRKINFSNNK 68 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCCEEC-----------------------CCCCGGGCTTCCEEECCSSC
T ss_pred CEeEeCCCCcc-cCccCCC-CCCCEEEcCCCcCCccC-----------------------chhhhccCCCCCEEECCCCc
Confidence 46777777776 4554332 12445555555554332 22222223445555555555
Q ss_pred CcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhh
Q 039087 272 LTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQEC 351 (414)
Q Consensus 272 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 351 (414)
+++..+..|..+++|++|+|++|.|++..+..|..+++|++|+|++|+|++..|..|..+++|++|+|++|+|+++.+..
T Consensus 69 i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 69 ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence 54444444445555555555555554444444444555555555555555444444444555555555555555544444
Q ss_pred hhhcccCcEEEecCCCCC
Q 039087 352 ARLLIRNVGFDFSANCIP 369 (414)
Q Consensus 352 ~~~~~~L~~L~ls~N~l~ 369 (414)
+..+++|++|++++|+++
T Consensus 149 ~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTTCTTCCEEECCSCCEE
T ss_pred hcCCCCCCEEEecCcCCc
Confidence 444444555555555544
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=7.1e-20 Score=171.33 Aligned_cols=193 Identities=18% Similarity=0.245 Sum_probs=151.8
Q ss_pred CEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccccccccccccc
Q 039087 144 NLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQ 223 (414)
Q Consensus 144 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l~~n~ 223 (414)
..+.+..+.+++..+ +..+++|++|++++|.+.. ++ .+..+++|++|++++|++++ ++
T Consensus 27 ~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~----------------- 84 (291)
T 1h6t_A 27 IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IK----------------- 84 (291)
T ss_dssp HHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-----------------
T ss_pred HHHHhcCCCcccccc--hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Cc-----------------
Confidence 344566666654322 4467889999999999884 44 47788899999999998872 22
Q ss_pred cccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCccc
Q 039087 224 FSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDT 303 (414)
Q Consensus 224 l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 303 (414)
......+|++|++++|.++ .++. +.. +++|++|++++|++++ + ..+..+++|++|++++|++++. ..
T Consensus 85 ------~l~~l~~L~~L~l~~n~l~-~~~~-l~~-l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~ 151 (291)
T 1h6t_A 85 ------PLANLKNLGWLFLDENKVK-DLSS-LKD-LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TV 151 (291)
T ss_dssp ------GGTTCTTCCEEECCSSCCC-CGGG-GTT-CTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GG
T ss_pred ------ccccCCCCCEEECCCCcCC-CChh-hcc-CCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hh
Confidence 1112346788888888887 4444 544 4899999999999985 3 5688999999999999999854 67
Q ss_pred ccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCCCCC
Q 039087 304 ISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDMQR 375 (414)
Q Consensus 304 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~ 375 (414)
+..+++|++|++++|+|++..+ +..+++|++|++++|.|+++. .+..+++|+.|++++|+++..+...
T Consensus 152 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~~~~~ 219 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINH 219 (291)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECCCEEC
T ss_pred hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCCcccc
Confidence 8899999999999999995444 889999999999999999874 3778889999999999998876543
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=8.6e-20 Score=163.63 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=66.9
Q ss_pred CCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEc
Q 039087 236 PASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNL 315 (414)
Q Consensus 236 ~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 315 (414)
.+++|++++|+++ .++...+..+++|++|+|++|++++..|..|..+++|++|+|++|+|+...+..|..+++|++|+|
T Consensus 33 ~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 3444555555544 222221122245555555555555444555555555555555555555333334455555555555
Q ss_pred ccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCC
Q 039087 316 AHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIP 369 (414)
Q Consensus 316 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~ 369 (414)
++|+|++..|..|..+++|++|+|++|.|+++.+..+..+++|++|++++|++.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 555555444455555555555555555555555544555555555555555554
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=6.8e-20 Score=187.80 Aligned_cols=189 Identities=17% Similarity=0.231 Sum_probs=120.6
Q ss_pred EEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccC
Q 039087 122 IDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSF 201 (414)
Q Consensus 122 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i 201 (414)
+.+..+.+.+.. .+..+++|+.|++++|.|+ .++ .|..+++|++|+|++|+|++..+ +..+++|++|+|++|.+
T Consensus 26 l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 26 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred HhccCCCccccc--chhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 334444444332 2456777778888888777 333 47777888888888888775443 77778888888888877
Q ss_pred CCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccC
Q 039087 202 SGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVG 281 (414)
Q Consensus 202 ~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 281 (414)
+ .+| ......+|++|+|++|++. .++ .+.. +++|+.|+|++|.+++. ..+.
T Consensus 100 ~-~l~-----------------------~l~~l~~L~~L~Ls~N~l~-~l~-~l~~-l~~L~~L~Ls~N~l~~l--~~l~ 150 (605)
T 1m9s_A 100 K-DLS-----------------------SLKDLKKLKSLSLEHNGIS-DIN-GLVH-LPQLESLYLGNNKITDI--TVLS 150 (605)
T ss_dssp C-CCT-----------------------TSTTCTTCCEEECTTSCCC-CCG-GGGG-CTTCSEEECCSSCCCCC--GGGG
T ss_pred C-CCh-----------------------hhccCCCCCEEEecCCCCC-CCc-cccC-CCccCEEECCCCccCCc--hhhc
Confidence 6 222 1111234666666666665 232 2333 36777777777777643 4566
Q ss_pred CCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccch
Q 039087 282 LFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQ 349 (414)
Q Consensus 282 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 349 (414)
.+++|+.|+|++|.|++..| +..+++|++|+|++|+|++ ++ .+..+++|+.|+|++|.+.+.+.
T Consensus 151 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECCCC
T ss_pred ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCCcc
Confidence 77777777777777775444 6677777777777777773 33 46677777777777777766543
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.2e-19 Score=174.96 Aligned_cols=173 Identities=17% Similarity=0.184 Sum_probs=87.8
Q ss_pred CEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhc--c-cccccccccccccccccCcccCC-CCCCEEEcc
Q 039087 168 QELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLF--N-KKLDAIFVNNNQFSGELPQNLGN-SPASVINLA 243 (414)
Q Consensus 168 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~--~-~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls 243 (414)
+++++++|.++ .+|..+. ..+++|+|++|+|+ .++...+ . .+|++|+|++|.|++..+..+.. .+|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 67888888888 5666543 45788888888887 3333322 2 22555555555555433333333 335555555
Q ss_pred cCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccc---cCCCCCcEEEcccCCC
Q 039087 244 NNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTI---SCMSDIEILNLAHNQL 320 (414)
Q Consensus 244 ~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l 320 (414)
+|+++ .++...+..+++|++|+|++|+++...+..|..+++|++|+|++|+|+...+..| ..+++|++|+|++|+|
T Consensus 97 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 55555 2332222223455555555555554444455555555555555555553222222 3345555555555555
Q ss_pred CCCCchhhhCCCC--CCeEecccccCc
Q 039087 321 SGELPDLVCSLRT--LMNLTVAFNFFS 345 (414)
Q Consensus 321 ~~~~p~~l~~l~~--L~~L~L~~N~l~ 345 (414)
+...+..+..++. ++.|+|++|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 5333334444443 244555555544
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=3.2e-19 Score=160.94 Aligned_cols=152 Identities=18% Similarity=0.195 Sum_probs=72.9
Q ss_pred CCEEecccccCCCCCCchhcccccccccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccC
Q 039087 191 LVYLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLN 269 (414)
Q Consensus 191 L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~ 269 (414)
.+.++.+++.++ .+|..+. .+|++|++++|.+++..+..+.. .+|++|++++|+++ .++...+..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCC
Confidence 456666666666 5554332 33555555555555443443332 33555555555554 33333322234455555555
Q ss_pred CcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcc
Q 039087 270 NQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSG 346 (414)
Q Consensus 270 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 346 (414)
|++++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|+|++..+..+..+++|++|+|++|.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 5554333334444555555555555554 444444445555555555555543333344444555555555555443
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=2.5e-19 Score=172.83 Aligned_cols=175 Identities=23% Similarity=0.228 Sum_probs=134.7
Q ss_pred EEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccC-CCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccc
Q 039087 121 GIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFK-DLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFN 199 (414)
Q Consensus 121 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 199 (414)
.+++++++++. +|..+. ..++.|+|++|+|++..+..|. ++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 46677777774 454443 4589999999999977777777 8999999999999999777778999999999999999
Q ss_pred cCCCCCCchhcccccccccccccccccccCcccC-CCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCcc
Q 039087 200 SFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLG-NSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPE 278 (414)
Q Consensus 200 ~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~ 278 (414)
+|+ .++.. .+. ..+|++|+|++|+++...+..+.. +++|++|+|++|+++...+.
T Consensus 99 ~l~-~~~~~----------------------~~~~l~~L~~L~L~~N~i~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 99 HLH-TLDEF----------------------LFSDLQALEVLLLYNNHIVVVDRNAFED-MAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp CCC-EECTT----------------------TTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCSCCGG
T ss_pred cCC-cCCHH----------------------HhCCCcCCCEEECCCCcccEECHHHhCC-cccCCEEECCCCcCCeeCHH
Confidence 987 33221 122 245788888888887444555554 48999999999999954444
Q ss_pred cc---CCCCCCCEEEccCCCCCCCCcccccCCCC--CcEEEcccCCCCC
Q 039087 279 GV---GLFSEMQVFDVSFNSLMGHLPDTISCMSD--IEILNLAHNQLSG 322 (414)
Q Consensus 279 ~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~ 322 (414)
.| ..+++|++|+|++|+|+...+..+..++. ++.|+|++|.+.-
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 45 57899999999999999766677877776 4899999999974
No 107
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.80 E-value=5.3e-21 Score=200.48 Aligned_cols=259 Identities=23% Similarity=0.201 Sum_probs=99.9
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcccCCCCCC--CCCCCCCceeeCCCCCCCCcEEEEEcCCCCCCCccccccCCCCCCC
Q 039087 67 SGSSLKTAYTALQAWKSAITDDPLRILDTWVG--DNVCSYKGIFCSDLGAQGPVVAGIDLNHANLQGNLVKELSLLTDVN 144 (414)
Q Consensus 67 ~~~~~~~~~~~L~~~~~~~~~~~~~~l~~w~~--~~~c~~~gv~c~~~~~~~~~l~~L~L~~n~l~~~~~~~l~~l~~L~ 144 (414)
+.+....++.++.++...+....+..-..|.. ...+.|.++.+. .++++.|+|.++.+... +..+ |+
T Consensus 126 s~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-----~~~~~~l~L~~n~~~~~-~~~~-----l~ 194 (727)
T 4b8c_D 126 SKSLVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS-----TPLTPKIELFANGKDEA-NQAL-----LQ 194 (727)
T ss_dssp ------CCCHHHHHHHHHHHHHHTTC------------------------------------------------------
T ss_pred hhhccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec-----CCccceEEeeCCCCCcc-hhhH-----hh
Confidence 34456677788888887765444555556743 345678777775 36789999999888753 2222 33
Q ss_pred EEECCCCcCCc---------cCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccccc
Q 039087 145 LLHLNTNRFSG---------TVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLD 215 (414)
Q Consensus 145 ~L~Ls~n~l~~---------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~ 215 (414)
.++|+.|.|.+ ..+..|..++.|++|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..+...
T Consensus 195 ~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l--- 269 (727)
T 4b8c_D 195 HKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL--- 269 (727)
T ss_dssp ---------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG---
T ss_pred cCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC---
Confidence 33444433331 34555556666666666666666 45555555666666666666665 444433222
Q ss_pred cccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCC
Q 039087 216 AIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNS 295 (414)
Q Consensus 216 ~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 295 (414)
.+|++|+|++|+|+ .+|..+..+ ++|++|+|++|.|+ .+|..|..+++|++|+|++|.
T Consensus 270 -------------------~~L~~L~Ls~N~l~-~lp~~~~~l-~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 270 -------------------SNLRVLDLSHNRLT-SLPAELGSC-FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp -------------------TTCCEEECTTSCCS-SCCSSGGGG-TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSC
T ss_pred -------------------CCCCEEeCcCCcCC-ccChhhcCC-CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCc
Confidence 34666666666666 666666553 67777777777776 566667777777777777777
Q ss_pred CCCCCcccccCCCC-CcEEEcccCCCCCCCchhhhCCCCCCeEecccc--------cCcccchhhhhhcccCcEEEecCC
Q 039087 296 LMGHLPDTISCMSD-IEILNLAHNQLSGELPDLVCSLRTLMNLTVAFN--------FFSGFSQECARLLIRNVGFDFSAN 366 (414)
Q Consensus 296 l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N--------~l~~~~~~~~~~~~~L~~L~ls~N 366 (414)
|++.+|..+..+.. +..|+|++|.+++.+|.. |+.|++++| .+.+..+..+..+..+....+++|
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~N 401 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYN 401 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------------------------------------------
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecc
Confidence 77666665543321 223567777777666543 344455555 222222223333444455666666
Q ss_pred CCC
Q 039087 367 CIP 369 (414)
Q Consensus 367 ~l~ 369 (414)
.+.
T Consensus 402 il~ 404 (727)
T 4b8c_D 402 TLC 404 (727)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=7.6e-19 Score=157.43 Aligned_cols=150 Identities=23% Similarity=0.247 Sum_probs=85.4
Q ss_pred EEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccC
Q 039087 122 IDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSF 201 (414)
Q Consensus 122 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i 201 (414)
+++++++++. +|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|+|++..|..|..+++|++|+|++|+|
T Consensus 16 v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 16 VDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 3444455553 333332 5677777777777765555677777777777777777766666777777777777777766
Q ss_pred CCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccC
Q 039087 202 SGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVG 281 (414)
Q Consensus 202 ~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 281 (414)
+ .+|. ..+..+++|++|+|++|++++..+..|.
T Consensus 93 ~-~l~~----------------------------------------------~~f~~l~~L~~L~L~~N~l~~~~~~~~~ 125 (220)
T 2v9t_B 93 T-ELPK----------------------------------------------SLFEGLFSLQLLLLNANKINCLRVDAFQ 125 (220)
T ss_dssp C-CCCT----------------------------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred C-ccCH----------------------------------------------hHccCCCCCCEEECCCCCCCEeCHHHcC
Confidence 5 2221 1111124455555555555544444555
Q ss_pred CCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCC
Q 039087 282 LFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLS 321 (414)
Q Consensus 282 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 321 (414)
.+++|++|+|++|+|++..+..|..+++|++|+|++|.+.
T Consensus 126 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5555555555555555444444545555555555555443
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=2.9e-19 Score=183.18 Aligned_cols=196 Identities=18% Similarity=0.251 Sum_probs=156.5
Q ss_pred CCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhccccccccccc
Q 039087 141 TDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVN 220 (414)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l~ 220 (414)
..+..+.+..+.+.+..+ +..+.+|++|++++|.+. .++ .+..+++|++|+|++|.+++ ++.
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~-~~~------------- 82 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP------------- 82 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCC-CGG-------------
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCC-Chh-------------
Confidence 344556677777764433 456788999999999988 444 57888999999999998873 221
Q ss_pred ccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCC
Q 039087 221 NNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHL 300 (414)
Q Consensus 221 ~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 300 (414)
.....+|++|+|++|.+. .++ .+.. +++|++|+|++|.+.+ + ..+..+++|+.|+|++|.+++.
T Consensus 83 ----------l~~l~~L~~L~Ls~N~l~-~l~-~l~~-l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l- 146 (605)
T 1m9s_A 83 ----------LTNLKNLGWLFLDENKIK-DLS-SLKD-LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI- 146 (605)
T ss_dssp ----------GGGCTTCCEEECCSSCCC-CCT-TSTT-CTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-
T ss_pred ----------hccCCCCCEEECcCCCCC-CCh-hhcc-CCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-
Confidence 112346888888888887 454 4544 4899999999999985 3 4688999999999999999964
Q ss_pred cccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCCCCCC
Q 039087 301 PDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGRDMQR 375 (414)
Q Consensus 301 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~ 375 (414)
..+..+++|++|+|++|.|++..| +..+++|++|+|++|.|+++. .+..+++|+.|+|++|+|++.|...
T Consensus 147 -~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 147 -TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp -GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCC
T ss_pred -hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCcccc
Confidence 678999999999999999996555 889999999999999999873 4777889999999999999887654
No 110
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=5.4e-21 Score=196.17 Aligned_cols=141 Identities=11% Similarity=0.014 Sum_probs=98.7
Q ss_pred CCCCEEEcccCcCCCCCchhhhhcccCCcEEEcc----CCcCccc-----CccccCCCCCCCEEEccCCC--CCCCCccc
Q 039087 235 SPASVINLANNRLSGSIPASFGITNSKLKEILFL----NNQLTGC-----IPEGVGLFSEMQVFDVSFNS--LMGHLPDT 303 (414)
Q Consensus 235 ~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls----~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~ 303 (414)
.+|++|+++.|.+++..+..+...+++|++|+++ .|.+++. ++..+..+++|++|++++|. +++.....
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 4566777766666655555555545677777775 5556542 22335567778888886543 55443333
Q ss_pred cc-CCCCCcEEEcccCCCCCC-CchhhhCCCCCCeEecccccCccc-chhhhhhcccCcEEEecCCCCCCCCCCC
Q 039087 304 IS-CMSDIEILNLAHNQLSGE-LPDLVCSLRTLMNLTVAFNFFSGF-SQECARLLIRNVGFDFSANCIPGRDMQR 375 (414)
Q Consensus 304 l~-~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~~~~L~~L~ls~N~l~~~~~~~ 375 (414)
+. .+++|++|++++|.+++. ++..+..+++|++|+|++|.|++. .+.....+++|++|++++|+++....+.
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~ 532 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDL 532 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTG
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHH
Confidence 33 478899999999999863 455667899999999999998765 3445667889999999999999875543
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=156.38 Aligned_cols=85 Identities=21% Similarity=0.266 Sum_probs=41.0
Q ss_pred CcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEeccc
Q 039087 262 LKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAF 341 (414)
Q Consensus 262 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 341 (414)
|++|+|++|++++..+..|..+++|++|+|++|+|++..|..|..+++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 33333333333333333344444455555555555444444455555555555555555544445555555555555555
Q ss_pred ccCcc
Q 039087 342 NFFSG 346 (414)
Q Consensus 342 N~l~~ 346 (414)
|.+..
T Consensus 163 N~l~c 167 (220)
T 2v70_A 163 NPFNC 167 (220)
T ss_dssp CCEEC
T ss_pred cCCcC
Confidence 55544
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=9.8e-19 Score=153.87 Aligned_cols=80 Identities=11% Similarity=0.203 Sum_probs=31.5
Q ss_pred CCcEEEccCCcCcccCccccCCCCCCCEEEccCCC-CCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEec
Q 039087 261 KLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNS-LMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTV 339 (414)
Q Consensus 261 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 339 (414)
+|++|++++|++++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|++++ ++ .+..+++|++|++
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYA 188 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEe
Confidence 34444444444433333334444444444444443 32 222 23344444444444444442 22 3334444444444
Q ss_pred ccccC
Q 039087 340 AFNFF 344 (414)
Q Consensus 340 ~~N~l 344 (414)
++|+|
T Consensus 189 ~~N~i 193 (197)
T 4ezg_A 189 FSQTI 193 (197)
T ss_dssp CBC--
T ss_pred eCccc
Confidence 44443
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=2.3e-18 Score=151.49 Aligned_cols=154 Identities=12% Similarity=0.162 Sum_probs=122.7
Q ss_pred cCCCCCCEEecccccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEE
Q 039087 186 LYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEI 265 (414)
Q Consensus 186 ~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L 265 (414)
..+++|++|++++|.++ .+| ..-...+|++|++++|.++ .++ .+.. +++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-----------------------~l~~l~~L~~L~l~~n~~~-~~~-~l~~-l~~L~~L 93 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-----------------------GIEYAHNIKDLTINNIHAT-NYN-PISG-LSNLERL 93 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-----------------------TGGGCTTCSEEEEESCCCS-CCG-GGTT-CTTCCEE
T ss_pred hhcCCccEEeccCCCcc-ChH-----------------------HHhcCCCCCEEEccCCCCC-cch-hhhc-CCCCCEE
Confidence 44567777777777776 333 1112246788888888665 333 4544 4899999
Q ss_pred EccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCC-CCCCCchhhhCCCCCCeEecccccC
Q 039087 266 LFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQ-LSGELPDLVCSLRTLMNLTVAFNFF 344 (414)
Q Consensus 266 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l 344 (414)
++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+ ++ .++ .+..+++|++|++++|.+
T Consensus 94 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 94 RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp EEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCC
T ss_pred EeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCC
Confidence 999999998788899999999999999999998888999999999999999998 76 666 688999999999999999
Q ss_pred cccchhhhhhcccCcEEEecCCCCCC
Q 039087 345 SGFSQECARLLIRNVGFDFSANCIPG 370 (414)
Q Consensus 345 ~~~~~~~~~~~~~L~~L~ls~N~l~~ 370 (414)
+++. .+..+++|++|++++|+|.+
T Consensus 172 ~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 172 HDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCCT--TGGGCSSCCEEEECBC----
T ss_pred cChH--HhccCCCCCEEEeeCcccCC
Confidence 9865 67778899999999999865
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=4.4e-19 Score=163.44 Aligned_cols=166 Identities=19% Similarity=0.252 Sum_probs=106.0
Q ss_pred cEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecc
Q 039087 118 VVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLR 197 (414)
Q Consensus 118 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 197 (414)
+++.++++++.+++.. .+..+++|++|++++|+|+ .++ .+..+++|++|+|++|++++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 4556677788887543 5778899999999999998 455 68889999999999999995444 8889999999999
Q ss_pred cccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCc
Q 039087 198 FNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIP 277 (414)
Q Consensus 198 ~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~ 277 (414)
+|+++ .+|.... .+|++|++++|.+++ ++ .+.. +++|++|++++|++++. +
T Consensus 94 ~N~l~-~l~~~~~-~~L~~L~L~~N~l~~------------------------~~-~l~~-l~~L~~L~Ls~N~i~~~-~ 144 (263)
T 1xeu_A 94 RNRLK-NLNGIPS-ACLSRLFLDNNELRD------------------------TD-SLIH-LKNLEILSIRNNKLKSI-V 144 (263)
T ss_dssp SSCCS-CCTTCCC-SSCCEEECCSSCCSB------------------------SG-GGTT-CTTCCEEECTTSCCCBC-G
T ss_pred CCccC-CcCcccc-CcccEEEccCCccCC------------------------Ch-hhcC-cccccEEECCCCcCCCC-h
Confidence 99988 3443222 334555555544442 22 2222 24555555555555532 2
Q ss_pred cccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCC
Q 039087 278 EGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLS 321 (414)
Q Consensus 278 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 321 (414)
.+..+++|++|++++|++++. ..+..+++|++|++++|.++
T Consensus 145 -~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 145 -MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp -GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred -HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 345555555555555555533 44555555555555555555
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=4.3e-21 Score=195.48 Aligned_cols=190 Identities=16% Similarity=0.085 Sum_probs=152.0
Q ss_pred CCCCCCCEEeCcCccCCCCCchhccCCCCCCEEeccccc-------------CCCCCCchhcccc-ccccc-cccccccc
Q 039087 162 KDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNS-------------FSGPLPQDLFNKK-LDAIF-VNNNQFSG 226 (414)
Q Consensus 162 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-------------i~~~~p~~~~~~~-L~~L~-l~~n~l~~ 226 (414)
..+++|+.|+|++|+++ .+|..+..+++|++|++++|. +.+..|..+.... |+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56788888999999888 788888888889888887764 3333444444433 66666 5555443
Q ss_pred ccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccC
Q 039087 227 ELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISC 306 (414)
Q Consensus 227 ~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 306 (414)
.|+.+.+++|.++ .++. ..|++|++++|++++ +|. |..+++|++|+|++|.|+ .+|..|..
T Consensus 424 ---------~L~~l~l~~n~i~-~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ---------DLRSKFLLENSVL-KMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ---------HHHHHHHHHHHHH-HHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ---------hhhhhhhhccccc-ccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 2334445555554 2221 369999999999995 676 999999999999999999 88999999
Q ss_pred CCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccc-hhhhhhcccCcEEEecCCCCCCCCCC
Q 039087 307 MSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFS-QECARLLIRNVGFDFSANCIPGRDMQ 374 (414)
Q Consensus 307 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~L~~L~ls~N~l~~~~~~ 374 (414)
+++|++|+|++|+|++ +| .+..+++|++|+|++|.|++.+ |..+..+++|+.|+|++|+|++.+..
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 9999999999999994 77 8999999999999999999997 88899999999999999999998754
No 116
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=3.5e-20 Score=190.16 Aligned_cols=254 Identities=9% Similarity=0.020 Sum_probs=142.7
Q ss_pred CcEEEEEcCCCCCCCc----cccccCCCCCCCEEECCCCcCCc----cCccccCCCCCCCEEeCcCccCCCCCchhccCC
Q 039087 117 PVVAGIDLNHANLQGN----LVKELSLLTDVNLLHLNTNRFSG----TVPETFKDLTSLQELDLSNNQFSGPFPLVTLYI 188 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 188 (414)
+++++|+|++|.+.+. ++..+..+++|++|++++|.+++ .++..+.++++|++|++++|.+. .++..+..+
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhh
Confidence 4567777777766544 22334456667777777766652 23333445666777777666655 234444444
Q ss_pred CCCCEEecccccC--------------------------CCCCCchhccc-ccccccccccccccccCc-ccC-------
Q 039087 189 PNLVYLDLRFNSF--------------------------SGPLPQDLFNK-KLDAIFVNNNQFSGELPQ-NLG------- 233 (414)
Q Consensus 189 ~~L~~L~Ls~N~i--------------------------~~~~p~~~~~~-~L~~L~l~~n~l~~~~~~-~~~------- 233 (414)
++|++|+++.... ...+|..+... +|++|++++|.+++.... .+.
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 4444444432110 11233333222 367777776665432211 111
Q ss_pred ------------------CCCCCEEEcc-----------cCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCC-C
Q 039087 234 ------------------NSPASVINLA-----------NNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGL-F 283 (414)
Q Consensus 234 ------------------~~~L~~L~ls-----------~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~-l 283 (414)
..+|++|+++ .|.+++.....+...+++|++|+++.|++++..+..+.. +
T Consensus 323 L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 402 (592)
T 3ogk_B 323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402 (592)
T ss_dssp EEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC
T ss_pred EeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC
Confidence 1335666666 234443222233333466777777666666554444444 6
Q ss_pred CCCCEEEcc----CCCCCCC-----CcccccCCCCCcEEEcccC--CCCCCCchhhh-CCCCCCeEecccccCccc-chh
Q 039087 284 SEMQVFDVS----FNSLMGH-----LPDTISCMSDIEILNLAHN--QLSGELPDLVC-SLRTLMNLTVAFNFFSGF-SQE 350 (414)
Q Consensus 284 ~~L~~L~Ls----~N~l~~~-----~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~-~~~ 350 (414)
++|++|+++ .|.+++. ++..+..+++|++|++++| .+++..+..+. .+++|++|+|++|.+++. .+.
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 482 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME 482 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH
Confidence 677777775 5666643 2233556777888888643 36654444443 478899999999988864 345
Q ss_pred hhhhcccCcEEEecCCCCCCC
Q 039087 351 CARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 351 ~~~~~~~L~~L~ls~N~l~~~ 371 (414)
.+..+++|++|++++|+|++.
T Consensus 483 ~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 483 FSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp HHTCCTTCCEEEEESCCCBHH
T ss_pred HHhcCcccCeeeccCCCCcHH
Confidence 566778899999999998643
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=8e-19 Score=161.71 Aligned_cols=173 Identities=16% Similarity=0.240 Sum_probs=128.8
Q ss_pred CCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccccccccc
Q 039087 140 LTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFV 219 (414)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l 219 (414)
+.++..+++++|.+++ ++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++
T Consensus 18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~---------------- 77 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD---------------- 77 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC----------------
T ss_pred HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC----------------
Confidence 4556667777887773 33 4667788888888888887 445 57777888888888887772
Q ss_pred cccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCC
Q 039087 220 NNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGH 299 (414)
Q Consensus 220 ~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 299 (414)
++..-...+|++|++++|+++ .++.... ++|++|++++|++++ + ..+..+++|++|++++|++++.
T Consensus 78 --------~~~l~~l~~L~~L~L~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 78 --------LSPLKDLTKLEELSVNRNRLK-NLNGIPS---ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp --------CGGGTTCSSCCEEECCSSCCS-CCTTCCC---SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC
T ss_pred --------ChhhccCCCCCEEECCCCccC-CcCcccc---CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC
Confidence 222112356889999999988 4554332 689999999998885 3 3588888999999999998854
Q ss_pred CcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchh
Q 039087 300 LPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQE 350 (414)
Q Consensus 300 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 350 (414)
+ .+..+++|++|++++|+|++. ..+..+++|++|++++|.++..+..
T Consensus 144 -~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 144 -V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp -G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred -h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCccc
Confidence 3 678888999999999999854 6678888899999999988876543
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=6.1e-18 Score=148.22 Aligned_cols=134 Identities=21% Similarity=0.217 Sum_probs=99.9
Q ss_pred cccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccC
Q 039087 214 LDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSF 293 (414)
Q Consensus 214 L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 293 (414)
-+.+++++|.++ .+|..+.. .+++|++++|++++..+...+..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~~-~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIPL-HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCCT-TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcC-cCccCCCC-CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 467788888886 66665543 7788888888887433333233347888888888888877777788888888888888
Q ss_pred CCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccch
Q 039087 294 NSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQ 349 (414)
Q Consensus 294 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 349 (414)
|+|++..+..|..+++|++|+|++|+|++..|..+..+++|++|+|++|.+.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88887777777788888888888888887777778788888888888888876543
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=145.06 Aligned_cols=128 Identities=21% Similarity=0.237 Sum_probs=76.6
Q ss_pred CEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccc
Q 039087 238 SVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAH 317 (414)
Q Consensus 238 ~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 317 (414)
+++++++|.++ .+|..+. ++|++|++++|+++ .+|..|..+++|++|+|++|.|++..+..|..+++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45556666655 5555442 45666666666665 4555566666666666666666655555566666666666666
Q ss_pred CCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCC
Q 039087 318 NQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPG 370 (414)
Q Consensus 318 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~ 370 (414)
|+|++..+..|..+++|++|+|++|.|+.+++..+..+++|+.|++++|++..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 66665455556666666666666666666555555555666666666666543
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=3.2e-17 Score=140.26 Aligned_cols=135 Identities=16% Similarity=0.158 Sum_probs=118.8
Q ss_pred CCCCEEEcccCcCC-CCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEE
Q 039087 235 SPASVINLANNRLS-GSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEIL 313 (414)
Q Consensus 235 ~~L~~L~ls~N~l~-~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 313 (414)
.++++|++++|.++ +.+|..+.. +++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGG-GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHh-CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 56899999999987 677777655 48999999999999855 788899999999999999997788888889999999
Q ss_pred EcccCCCCCCCc--hhhhCCCCCCeEecccccCcccch---hhhhhcccCcEEEecCCCCCCCCC
Q 039087 314 NLAHNQLSGELP--DLVCSLRTLMNLTVAFNFFSGFSQ---ECARLLIRNVGFDFSANCIPGRDM 373 (414)
Q Consensus 314 ~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~~---~~~~~~~~L~~L~ls~N~l~~~~~ 373 (414)
++++|+|++ ++ ..+..+++|++|++++|.+++.++ ..+..+++|++|++++|.++.++.
T Consensus 101 ~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp ECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred eccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 999999994 44 788899999999999999998877 578889999999999999988764
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=4.9e-17 Score=142.42 Aligned_cols=131 Identities=18% Similarity=0.232 Sum_probs=100.6
Q ss_pred CCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCcc-ccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEc
Q 039087 237 ASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPE-GVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNL 315 (414)
Q Consensus 237 L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 315 (414)
.+++++++|+++ .+|..+. .++++|++++|++++..+. .|..+++|++|+|++|+|++..|..|..+++|++|+|
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 367788888886 7777654 4788888888888755443 4777888888888888888777778888888888888
Q ss_pred ccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCC
Q 039087 316 AHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 316 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~ 371 (414)
++|+|++..+..|..+++|++|+|++|+|++.++..+..+++|++|++++|++++.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 88888866666677788888888888888887777777777788888888887754
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=3.9e-18 Score=178.73 Aligned_cols=189 Identities=17% Similarity=0.158 Sum_probs=121.1
Q ss_pred EEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccC
Q 039087 122 IDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSF 201 (414)
Q Consensus 122 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i 201 (414)
+++..|.+. ..+..+..++.|+.|+|++|+|. .+|..+.++++|++|+|++|.|+ .+|..|..+++|++|+|++|.|
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 333344443 45677899999999999999998 77877779999999999999999 8899999999999999999999
Q ss_pred CCCCCchhcccc-cccccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccc
Q 039087 202 SGPLPQDLFNKK-LDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEG 279 (414)
Q Consensus 202 ~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~ 279 (414)
+ .+|..+.... |++|+|++|.|+ .+|..+.. .+|++|+|++|.+++.+|..+......+..++|++|.+++.+|..
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 9 8899888765 999999999998 77877766 569999999999998888777654233445789999999877764
Q ss_pred cCCCCCCCEEEccCC--------CCCCCCcccccCCCCCcEEEcccCCCC
Q 039087 280 VGLFSEMQVFDVSFN--------SLMGHLPDTISCMSDIEILNLAHNQLS 321 (414)
Q Consensus 280 ~~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 321 (414)
|+.|+++.| .+.+..+..+..+..+....+++|.+.
T Consensus 361 ------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 361 ------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -----------------------------------------------CCC
T ss_pred ------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 556666666 344444445556667777788888775
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=9.7e-17 Score=138.48 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=66.7
Q ss_pred CEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccc
Q 039087 238 SVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAH 317 (414)
Q Consensus 238 ~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 317 (414)
+.+++++|+++ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 44555555554 4443332 4455555555555543334445555555555555555544444445555555555555
Q ss_pred CCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCC
Q 039087 318 NQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPG 370 (414)
Q Consensus 318 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~ 370 (414)
|+|++..+..+..+++|++|++++|.|+++++..+..+++|++|++++|++++
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 55554333444555555555555555555554444555555555555555554
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=2.2e-16 Score=132.17 Aligned_cols=128 Identities=18% Similarity=0.161 Sum_probs=100.5
Q ss_pred CCCCEEEcccCcCC-CCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEE
Q 039087 235 SPASVINLANNRLS-GSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEIL 313 (414)
Q Consensus 235 ~~L~~L~ls~N~l~-~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 313 (414)
.++++|++++|.++ +.+|..+.. +++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTT-CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhh-cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 35778888888877 567765554 47888888888888754 677888888888888888887678777778888888
Q ss_pred EcccCCCCCC-CchhhhCCCCCCeEecccccCcccch---hhhhhcccCcEEEecC
Q 039087 314 NLAHNQLSGE-LPDLVCSLRTLMNLTVAFNFFSGFSQ---ECARLLIRNVGFDFSA 365 (414)
Q Consensus 314 ~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~---~~~~~~~~L~~L~ls~ 365 (414)
++++|++++. .+..+..+++|++|++++|.+++.++ ..+..+++|++||+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888842 33678888888888888888888776 5777788888888763
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=7.9e-16 Score=134.82 Aligned_cols=128 Identities=18% Similarity=0.245 Sum_probs=106.5
Q ss_pred cccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCC
Q 039087 216 AIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNS 295 (414)
Q Consensus 216 ~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 295 (414)
.+++++|.++ .+|..+. ..+++|++++|+++ .+|..+..+ ++|++|+|++|++++..+..|..+++|++|+|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~-~~l~~L~L~~n~i~-~ip~~~~~l-~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP-RDVTELYLDGNQFT-LVPKELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC-TTCCEEECCSSCCC-SCCGGGGGC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC-CCCCEEECCCCcCc-hhHHHhhcc-cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3444444444 4554432 46889999999998 888776664 899999999999997777889999999999999999
Q ss_pred CCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCccc
Q 039087 296 LMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGF 347 (414)
Q Consensus 296 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 347 (414)
|++..+..|..+++|++|+|++|+|+...+..|..+++|++|+|++|.+...
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 9988888999999999999999999965556788999999999999998754
No 126
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=6.4e-18 Score=173.28 Aligned_cols=135 Identities=13% Similarity=0.028 Sum_probs=91.7
Q ss_pred CCCCEEEcccCcCCCCCchhhhhcccCCcEEEcc--C----CcCccc-----CccccCCCCCCCEEEccCCCCCCCCccc
Q 039087 235 SPASVINLANNRLSGSIPASFGITNSKLKEILFL--N----NQLTGC-----IPEGVGLFSEMQVFDVSFNSLMGHLPDT 303 (414)
Q Consensus 235 ~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls--~----N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 303 (414)
.+|++|++..|.+++.....+...+++|++|+++ + +.++.. ++..+..+++|++|++++ .+++.....
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 4577777777777655555555445778888887 3 444421 112255667888888866 555444444
Q ss_pred ccC-CCCCcEEEcccCCCCCCCchhh-hCCCCCCeEecccccCcccchh-hhhhcccCcEEEecCCCCCC
Q 039087 304 ISC-MSDIEILNLAHNQLSGELPDLV-CSLRTLMNLTVAFNFFSGFSQE-CARLLIRNVGFDFSANCIPG 370 (414)
Q Consensus 304 l~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~L~~L~ls~N~l~~ 370 (414)
+.. +++|++|+|++|.+++.....+ ..+++|++|+|++|.+++.... ....+++|++|++++|+++.
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 444 7889999999998876544444 6688999999999998655433 45557789999999998853
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=3.4e-16 Score=148.81 Aligned_cols=194 Identities=9% Similarity=-0.047 Sum_probs=102.2
Q ss_pred CCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcccc--ccccccccccccc---cc-Cccc-CCCC
Q 039087 164 LTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFNKK--LDAIFVNNNQFSG---EL-PQNL-GNSP 236 (414)
Q Consensus 164 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~--L~~L~l~~n~l~~---~~-~~~~-~~~~ 236 (414)
+++|++|+|.+ .++..-+..|.++++|++|++++|.+. .++...|... +..+.+..+.... .+ ...+ ....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 88888888887 777555667888888888888888877 5665555533 4444333321100 00 0001 0112
Q ss_pred C--------------------------CEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEE
Q 039087 237 A--------------------------SVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFD 290 (414)
Q Consensus 237 L--------------------------~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 290 (414)
+ +.+.+.++-.. .....+...+++|++++|++|+++......|..+++|++|+
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 2 22322222111 11111112235566666666655544444555666666666
Q ss_pred ccCCCCCCCCcccccCCCCCc-EEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEE
Q 039087 291 VSFNSLMGHLPDTISCMSDIE-ILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFD 362 (414)
Q Consensus 291 Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ 362 (414)
+.+| ++.+...+|.++.+|+ .+++.+ .++...+.+|..+++|++|+++.|.++.+....|..+++|+.++
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 6655 5444455556666666 666655 45433345556666666666666666655555565555555554
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=9.8e-16 Score=130.90 Aligned_cols=62 Identities=10% Similarity=0.081 Sum_probs=28.9
Q ss_pred cCCcEEEccCCcCcccC-ccccCCCCCCCEEEccCCCCCCCCc---ccccCCCCCcEEEcccCCCC
Q 039087 260 SKLKEILFLNNQLTGCI-PEGVGLFSEMQVFDVSFNSLMGHLP---DTISCMSDIEILNLAHNQLS 321 (414)
Q Consensus 260 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~ 321 (414)
++|++|++++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 45555555555554221 1344455555555555555543322 24444445555555554444
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=3.9e-16 Score=134.62 Aligned_cols=136 Identities=20% Similarity=0.220 Sum_probs=108.6
Q ss_pred cccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCC
Q 039087 230 QNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSD 309 (414)
Q Consensus 230 ~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 309 (414)
......++++|++++|.++ .++. +....++|++|++++|.+++. ..|..+++|++|++++|.|++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3334466888999999888 5654 444445899999999999854 67888899999999999998655555688899
Q ss_pred CcEEEcccCCCCCCCch--hhhCCCCCCeEecccccCcccchh---hhhhcccCcEEEecCCCCCC
Q 039087 310 IEILNLAHNQLSGELPD--LVCSLRTLMNLTVAFNFFSGFSQE---CARLLIRNVGFDFSANCIPG 370 (414)
Q Consensus 310 L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~~~---~~~~~~~L~~L~ls~N~l~~ 370 (414)
|++|++++|+|+ .+|. .+..+++|++|++++|.++..+.. .+..+++|++||+++|.+..
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999999997 6666 788899999999999999876543 57788889999999988754
No 130
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=8e-17 Score=165.08 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=72.9
Q ss_pred ccCCcEEEccCCcCcccCccccC-CCCCCCEEEcc--C----CCCCCCC-----cccccCCCCCcEEEcccCCCCCCCch
Q 039087 259 NSKLKEILFLNNQLTGCIPEGVG-LFSEMQVFDVS--F----NSLMGHL-----PDTISCMSDIEILNLAHNQLSGELPD 326 (414)
Q Consensus 259 ~~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~~~~p~ 326 (414)
+++|++|.+..|.+++.....+. .+++|++|+++ + |.++... +..+..+++|++|+|++ .+++..+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 35566665555555543333333 46778888887 3 4554211 11245667888888876 66655455
Q ss_pred hhhC-CCCCCeEecccccCcccchhhh-hhcccCcEEEecCCCCCCC
Q 039087 327 LVCS-LRTLMNLTVAFNFFSGFSQECA-RLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 327 ~l~~-l~~L~~L~L~~N~l~~~~~~~~-~~~~~L~~L~ls~N~l~~~ 371 (414)
.+.. +++|++|+|++|.+++.....+ ..+++|++|++++|++++.
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 5554 7889999999999877655443 6678899999999998654
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=2.5e-15 Score=129.53 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=103.9
Q ss_pred ccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCC
Q 039087 215 DAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFN 294 (414)
Q Consensus 215 ~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 294 (414)
+.+++++|.++ .+|..+. .++++|++++|+++ .++...+..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~~-~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP-SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC-TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCCC-CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 34444444444 3443332 46888999998888 555544333589999999999999666677889999999999999
Q ss_pred CCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccch
Q 039087 295 SLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQ 349 (414)
Q Consensus 295 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 349 (414)
++++..+..+..+++|++|++++|+|++..+..+..+++|++|+|++|.+.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9997777778899999999999999996555567889999999999999998765
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=5e-16 Score=147.68 Aligned_cols=218 Identities=8% Similarity=0.043 Sum_probs=162.5
Q ss_pred CcEEEEEcCCCCCC--------------------CccccccCC--------CCCCCEEECCCCcCCccCccccCCCCCCC
Q 039087 117 PVVAGIDLNHANLQ--------------------GNLVKELSL--------LTDVNLLHLNTNRFSGTVPETFKDLTSLQ 168 (414)
Q Consensus 117 ~~l~~L~L~~n~l~--------------------~~~~~~l~~--------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 168 (414)
++++.|||++|++. ......|.. +++|+.|+|.+ .++...+.+|.++++|+
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~ 127 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK 127 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence 46888999988877 223345677 99999999999 88867777899999999
Q ss_pred EEeCcCccCCCCCchhccCCCCCCEEecccccCC---CCCCch-hccc---------------------------ccccc
Q 039087 169 ELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFS---GPLPQD-LFNK---------------------------KLDAI 217 (414)
Q Consensus 169 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~---~~~p~~-~~~~---------------------------~L~~L 217 (414)
+|++++|.+....+..|..+.++.++.+..+... ..+... +... .++.+
T Consensus 128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l 207 (329)
T 3sb4_A 128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL 207 (329)
T ss_dssp EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence 9999999998677788888888888877663220 011111 1111 12222
Q ss_pred cccccccccccCccc--CCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCC-EEEccCC
Q 039087 218 FVNNNQFSGELPQNL--GNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQ-VFDVSFN 294 (414)
Q Consensus 218 ~l~~n~l~~~~~~~~--~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~Ls~N 294 (414)
.+.++-.. .....+ ...+|+.+++++|+++ .++...+..+++|+++++.+| ++......|..+++|+ .+++.+
T Consensus 208 ~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 208 TIEGKLDN-ADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEECCCH-HHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred EEeeeecH-HHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 22221100 000000 1357999999999999 888888877899999999998 7756677899999999 999998
Q ss_pred CCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEec
Q 039087 295 SLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTV 339 (414)
Q Consensus 295 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 339 (414)
.++.+.+.+|.++++|++|++++|+++...+.+|.++++|++++.
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 787677899999999999999999999666678999999999864
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=6.6e-15 Score=123.09 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=102.7
Q ss_pred ccCCcEEEccCCcCc-ccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeE
Q 039087 259 NSKLKEILFLNNQLT-GCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNL 337 (414)
Q Consensus 259 ~~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 337 (414)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 368999999999998 78888899999999999999999865 778999999999999999997789888889999999
Q ss_pred ecccccCcccc-hhhhhhcccCcEEEecCCCCCCCCC
Q 039087 338 TVAFNFFSGFS-QECARLLIRNVGFDFSANCIPGRDM 373 (414)
Q Consensus 338 ~L~~N~l~~~~-~~~~~~~~~L~~L~ls~N~l~~~~~ 373 (414)
++++|.+++.. +..+..+++|++|++++|+|++.+.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 99999999864 4778888999999999999998764
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=1.2e-14 Score=124.50 Aligned_cols=110 Identities=16% Similarity=0.241 Sum_probs=93.7
Q ss_pred CCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEc
Q 039087 236 PASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNL 315 (414)
Q Consensus 236 ~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 315 (414)
..+++++++|.++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4678999999998 7887663 78999999999999777888999999999999999999777777888999999999
Q ss_pred ccCCCCCCCchhhhCCCCCCeEecccccCcccch
Q 039087 316 AHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQ 349 (414)
Q Consensus 316 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 349 (414)
++|+|++..+..|..+++|++|+|++|.+....+
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999996656678889999999999999887644
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=2.7e-14 Score=122.38 Aligned_cols=109 Identities=17% Similarity=0.121 Sum_probs=88.4
Q ss_pred CCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecc
Q 039087 261 KLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVA 340 (414)
Q Consensus 261 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 340 (414)
..+++++++|+++ .+|..+ .++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4677888888887 566655 3788888888888887778888888888888888888886666667888888888888
Q ss_pred cccCcccchhhhhhcccCcEEEecCCCCCCCC
Q 039087 341 FNFFSGFSQECARLLIRNVGFDFSANCIPGRD 372 (414)
Q Consensus 341 ~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~ 372 (414)
+|+|+++++..+..+++|++|+|++|+++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 88888888877888888888888888887654
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.55 E-value=2.5e-14 Score=123.04 Aligned_cols=109 Identities=20% Similarity=0.250 Sum_probs=93.6
Q ss_pred CCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcc
Q 039087 237 ASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLA 316 (414)
Q Consensus 237 L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 316 (414)
-+.+++++|+++ .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 478999999997 8888764 789999999999997778889999999999999999997666667889999999999
Q ss_pred cCCCCCCCchhhhCCCCCCeEecccccCcccch
Q 039087 317 HNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQ 349 (414)
Q Consensus 317 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 349 (414)
+|+|++..+..|..+++|++|+|++|.+.....
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999995555568889999999999999887654
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=9.8e-14 Score=135.25 Aligned_cols=241 Identities=13% Similarity=0.091 Sum_probs=184.6
Q ss_pred cEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecc
Q 039087 118 VVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLR 197 (414)
Q Consensus 118 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 197 (414)
.++.+.+.. .++.+...+|.+ .+|+.+++..+ ++.....+|.+. +|+.+++.. .++..-...|.++++|+.+++.
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred CccEEEECC-ccCEehHhhccc-CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 345555554 455455567776 47999999876 775666778874 799999985 6775666789999999999999
Q ss_pred cccCCCCCCchhcccc-cccccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCccc
Q 039087 198 FNSFSGPLPQDLFNKK-LDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGC 275 (414)
Q Consensus 198 ~N~i~~~~p~~~~~~~-L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~ 275 (414)
.|.++ .++...|... |+.+.+..+ ++..-...|.. .+|+.+++..| ++ .++...+.. .+|+.+.+. +.++..
T Consensus 189 ~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 189 KTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccEE
Confidence 99998 7776666544 999999855 55333444444 46999999875 55 666666665 789999994 556645
Q ss_pred CccccCCCCCCCEEEccCCCCC-----CCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchh
Q 039087 276 IPEGVGLFSEMQVFDVSFNSLM-----GHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQE 350 (414)
Q Consensus 276 ~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 350 (414)
-...|..+++|+.+++.+|.+. .+....|.++++|+.++|.+ .++..-..+|..+++|+.++|..| ++.+...
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 6778999999999999988775 35667889999999999994 577555678889999999999655 7778888
Q ss_pred hhhhcccCcEEEecCCCCCCCC
Q 039087 351 CARLLIRNVGFDFSANCIPGRD 372 (414)
Q Consensus 351 ~~~~~~~L~~L~ls~N~l~~~~ 372 (414)
+|..+ +|+.+++++|.++.++
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCC
T ss_pred hCCCC-CCCEEEEcCCCCcccc
Confidence 89988 8999999999887764
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=5e-15 Score=127.61 Aligned_cols=135 Identities=15% Similarity=0.137 Sum_probs=94.6
Q ss_pred ccCCCCCCEEecccccCCCCCCchhcccccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcE
Q 039087 185 TLYIPNLVYLDLRFNSFSGPLPQDLFNKKLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKE 264 (414)
Q Consensus 185 ~~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~ 264 (414)
+..+.+|++|++++|.++ .+|...... .+|++|++++|.+++ + ..+.. +++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~----------------------~~L~~L~Ls~N~l~~-~-~~l~~-l~~L~~ 68 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATL----------------------DQFDAIDFSDNEIRK-L-DGFPL-LRRLKT 68 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGT----------------------TCCSEEECCSSCCCE-E-CCCCC-CSSCCE
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcC----------------------CCCCEEECCCCCCCc-c-ccccc-CCCCCE
Confidence 456677888888888777 333211111 146666666666663 2 23333 377888
Q ss_pred EEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcc--cccCCCCCcEEEcccCCCCCCCchh----hhCCCCCCeEe
Q 039087 265 ILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPD--TISCMSDIEILNLAHNQLSGELPDL----VCSLRTLMNLT 338 (414)
Q Consensus 265 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~ 338 (414)
|++++|++++..+..|..+++|++|++++|.|+ .+|. .+..+++|++|++++|.++ .+|.. +..+++|++||
T Consensus 69 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp EECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred EECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeC
Confidence 888888887554455578888888888888886 5555 7788888999999999888 55654 78889999999
Q ss_pred cccccCccc
Q 039087 339 VAFNFFSGF 347 (414)
Q Consensus 339 L~~N~l~~~ 347 (414)
+++|.+...
T Consensus 147 ~~~n~~~~~ 155 (176)
T 1a9n_A 147 FQKVKLKER 155 (176)
T ss_dssp TEECCHHHH
T ss_pred CCcCCHHHH
Confidence 999987654
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=1.9e-13 Score=133.25 Aligned_cols=239 Identities=12% Similarity=0.065 Sum_probs=150.4
Q ss_pred cEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecc
Q 039087 118 VVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLR 197 (414)
Q Consensus 118 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 197 (414)
+++.++|..+ ++.+...+|.+ .+|+.+++.. .++.....+|.++++|+.+++++|.++......|. ..+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 4666776654 55455556666 4677777765 56545556777777777777777777733334444 5777777776
Q ss_pred cccCCCCCCchhcc-c-ccccccccccccccccCcccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCc--
Q 039087 198 FNSFSGPLPQDLFN-K-KLDAIFVNNNQFSGELPQNLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLT-- 273 (414)
Q Consensus 198 ~N~i~~~~p~~~~~-~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~-- 273 (414)
.+ ++ .++...|. . +|+.+++..+ ++..-...|...+|+.+.+. +.++ .++...+..+++|+.+.+.+|.+.
T Consensus 212 ~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 212 VT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp TT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred Cc-hh-eehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccCC
Confidence 44 55 45544443 3 3777777764 34233344445667777773 4455 555555555677777777776654
Q ss_pred ---ccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchh
Q 039087 274 ---GCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQE 350 (414)
Q Consensus 274 ---~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 350 (414)
......|..+++|+.+++. +.++.+-...|.++.+|+.++|..| ++..-..+|..+ +|+++++++|.+..+...
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred cccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 2345567777777777777 3466555667777777777777554 553445667777 777777777777666555
Q ss_pred hhhhc-ccCcEEEecCCCC
Q 039087 351 CARLL-IRNVGFDFSANCI 368 (414)
Q Consensus 351 ~~~~~-~~L~~L~ls~N~l 368 (414)
.|..+ .+++.|.+-.|.+
T Consensus 364 ~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SCCCSCTTCCEEEECGGGH
T ss_pred cccCCCCCccEEEeCHHHH
Confidence 55554 3566666665543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=5.9e-14 Score=120.68 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=84.0
Q ss_pred CcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEeccc
Q 039087 262 LKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAF 341 (414)
Q Consensus 262 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 341 (414)
-+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 467888888886 5666553 7788888888888877777888888888888888888854445567788888888888
Q ss_pred ccCcccchhhhhhcccCcEEEecCCCCCCCC
Q 039087 342 NFFSGFSQECARLLIRNVGFDFSANCIPGRD 372 (414)
Q Consensus 342 N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~ 372 (414)
|+|+++++..+..+++|++|+|++|++...+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 8888877777777788888888888887654
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1.2e-16 Score=140.47 Aligned_cols=19 Identities=16% Similarity=0.044 Sum_probs=9.2
Q ss_pred hccCCCCCCEEecccccCC
Q 039087 184 VTLYIPNLVYLDLRFNSFS 202 (414)
Q Consensus 184 ~~~~l~~L~~L~Ls~N~i~ 202 (414)
.+..+++|++|++++|.++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~ 61 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE 61 (198)
T ss_dssp HHHHTTTCSEEECSEEEES
T ss_pred HHhcCCCCCEEECCCCCCc
Confidence 4444445555555544444
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=4.1e-16 Score=137.11 Aligned_cols=128 Identities=17% Similarity=0.208 Sum_probs=96.9
Q ss_pred CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEE
Q 039087 235 SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILN 314 (414)
Q Consensus 235 ~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 314 (414)
.+|++|++++|.++ .+| .+.. +++|++|++++|+++ .+|..+..+++|++|++++|++++ +| .+..+++|++|+
T Consensus 48 ~~L~~L~ls~n~l~-~l~-~~~~-l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 48 KACKHLALSTNNIE-KIS-SLSG-MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTCSEEECSEEEES-CCC-CHHH-HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred CCCCEEECCCCCCc-ccc-cccc-CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 45788888888887 466 5554 378888888888887 667777777888888888888874 44 577788888888
Q ss_pred cccCCCCCCCc--hhhhCCCCCCeEecccccCcccchh----------hhhhcccCcEEEecCCCCCCC
Q 039087 315 LAHNQLSGELP--DLVCSLRTLMNLTVAFNFFSGFSQE----------CARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 315 Ls~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~~~----------~~~~~~~L~~L~ls~N~l~~~ 371 (414)
+++|+|+ .++ ..+..+++|++|++++|.+++.++. .+..+++|+.|| +|+++..
T Consensus 122 l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 122 MSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp ESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred CCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence 8888888 333 3677888899999999988776543 366778888876 7777654
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=2.9e-14 Score=137.67 Aligned_cols=163 Identities=18% Similarity=0.140 Sum_probs=86.3
Q ss_pred CCCCCEEecccccCCCCCCchhcc------cccccccccccccccccCcccCC--CCCCEEEcccCcCCCCCchhhhh--
Q 039087 188 IPNLVYLDLRFNSFSGPLPQDLFN------KKLDAIFVNNNQFSGELPQNLGN--SPASVINLANNRLSGSIPASFGI-- 257 (414)
Q Consensus 188 l~~L~~L~Ls~N~i~~~~p~~~~~------~~L~~L~l~~n~l~~~~~~~~~~--~~L~~L~ls~N~l~~~~p~~~~~-- 257 (414)
+++|++|+|++|.++......+.. .+|++|+|++|.++......+.. .+|++|++++|.++......+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467889999999887322222211 23666777776665322222211 24666666666665332233221
Q ss_pred --cccCCcEEEccCCcCccc----CccccCCCCCCCEEEccCCCCCCC----CcccccCCCCCcEEEcccCCCCCC----
Q 039087 258 --TNSKLKEILFLNNQLTGC----IPEGVGLFSEMQVFDVSFNSLMGH----LPDTISCMSDIEILNLAHNQLSGE---- 323 (414)
Q Consensus 258 --~~~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~---- 323 (414)
..++|++|+|++|.++.. ++..+...++|++|+|++|.|++. ++..+...++|++|+|++|.|++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 124566666666666431 233334556666666666666531 233444555666666666666532
Q ss_pred CchhhhCCCCCCeEecccccCcccchh
Q 039087 324 LPDLVCSLRTLMNLTVAFNFFSGFSQE 350 (414)
Q Consensus 324 ~p~~l~~l~~L~~L~L~~N~l~~~~~~ 350 (414)
+...+...++|++|+|++|.|++....
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~ 257 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQ 257 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHH
Confidence 223344455666666666666554433
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.38 E-value=1.1e-12 Score=125.27 Aligned_cols=106 Identities=20% Similarity=0.161 Sum_probs=88.0
Q ss_pred CEEEcccC-cCCCCCchhhhhcccCCcEEEccC-CcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEc
Q 039087 238 SVINLANN-RLSGSIPASFGITNSKLKEILFLN-NQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNL 315 (414)
Q Consensus 238 ~~L~ls~N-~l~~~~p~~~~~~~~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 315 (414)
..++++++ +++ .+|. +..+ ++|++|+|++ |+|++..+..|..+++|++|+|++|+|++..|..|..+++|++|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~-~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGA-ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSC-SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC-CCCC-CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 46788888 888 7888 6553 7899999996 9998777788999999999999999999888888899999999999
Q ss_pred ccCCCCCCCchhhhCCCCCCeEecccccCccc
Q 039087 316 AHNQLSGELPDLVCSLRTLMNLTVAFNFFSGF 347 (414)
Q Consensus 316 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 347 (414)
++|+|++..+..+..++ |++|+|.+|.|...
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 99999955555565555 99999999998865
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=3.2e-14 Score=137.31 Aligned_cols=182 Identities=18% Similarity=0.187 Sum_probs=118.5
Q ss_pred CCCCCEEeCcCccCCCCCchhccC-----CCCCCEEecccccCCCCCCchhcc--cccccccccccccccccCccc----
Q 039087 164 LTSLQELDLSNNQFSGPFPLVTLY-----IPNLVYLDLRFNSFSGPLPQDLFN--KKLDAIFVNNNQFSGELPQNL---- 232 (414)
Q Consensus 164 l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~i~~~~p~~~~~--~~L~~L~l~~n~l~~~~~~~~---- 232 (414)
++.|++|+|++|.++......+.. .++|++|+|++|.++......+.. .+|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 367889999999887443333322 368999999999886333333332 358899999998875433332
Q ss_pred --CCCCCCEEEcccCcCCCC----CchhhhhcccCCcEEEccCCcCccc----CccccCCCCCCCEEEccCCCCCCC---
Q 039087 233 --GNSPASVINLANNRLSGS----IPASFGITNSKLKEILFLNNQLTGC----IPEGVGLFSEMQVFDVSFNSLMGH--- 299 (414)
Q Consensus 233 --~~~~L~~L~ls~N~l~~~----~p~~~~~~~~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~--- 299 (414)
...+|++|++++|.++.. ++..+.. .++|++|+|++|.+... +...+...++|++|+|++|.|++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHT-CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhc-CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 235689999999988742 2233333 47899999999988743 345566778899999999988753
Q ss_pred -CcccccCCCCCcEEEcccCCCCCCCchhhhCCCC-----CCeEe--cccccCcc
Q 039087 300 -LPDTISCMSDIEILNLAHNQLSGELPDLVCSLRT-----LMNLT--VAFNFFSG 346 (414)
Q Consensus 300 -~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-----L~~L~--L~~N~l~~ 346 (414)
+...+...++|++|+|++|.|++.-...+..+.. |+.+. +..|.++.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 3344556688999999999988654445543321 55555 55555543
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=3.3e-12 Score=121.99 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=57.8
Q ss_pred EEccCC-cCcccCccccCCCCCCCEEEccC-CCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccc
Q 039087 265 ILFLNN-QLTGCIPEGVGLFSEMQVFDVSF-NSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFN 342 (414)
Q Consensus 265 L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 342 (414)
++++++ +++ .+|. +..+++|++|+|++ |.|++..+..|..+++|++|+|++|+|++..|..|..+++|++|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455554 555 3455 55555566666653 5555544555555556666666666665555555555566666666666
Q ss_pred cCcccchhhhhhcccCcEEEecCCCCCC
Q 039087 343 FFSGFSQECARLLIRNVGFDFSANCIPG 370 (414)
Q Consensus 343 ~l~~~~~~~~~~~~~L~~L~ls~N~l~~ 370 (414)
+|+++++..+..++ |+.|+|.+|+|..
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 66555555554443 5556666665554
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.09 E-value=1.1e-10 Score=111.84 Aligned_cols=133 Identities=11% Similarity=0.168 Sum_probs=84.4
Q ss_pred CCCCCEEEcccCcCCCCCchhhhh-cccCCcEEEccC--CcCcc-----cCcccc--CCCCCCCEEEccCCCCCCCCccc
Q 039087 234 NSPASVINLANNRLSGSIPASFGI-TNSKLKEILFLN--NQLTG-----CIPEGV--GLFSEMQVFDVSFNSLMGHLPDT 303 (414)
Q Consensus 234 ~~~L~~L~ls~N~l~~~~p~~~~~-~~~~L~~L~Ls~--N~l~~-----~~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~ 303 (414)
..+|++|++..+.+.......+.. .+++|++|+|+. |...+ .+...+ ..+++|++|+|.+|.+.+..+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 345677777666655333333331 247788887753 22111 111222 24789999999999887433333
Q ss_pred c---cCCCCCcEEEcccCCCCCC----CchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCC
Q 039087 304 I---SCMSDIEILNLAHNQLSGE----LPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANC 367 (414)
Q Consensus 304 l---~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~ 367 (414)
+ ..+++|++|+|+.|.|++. ++..+..+++|++|+|++|.|+......+...- ...+++++|+
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 3 2478899999999999864 333445678999999999998866555444421 3678999887
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.95 E-value=3e-08 Score=96.22 Aligned_cols=236 Identities=14% Similarity=0.071 Sum_probs=115.5
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCcc--------------------
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQ-------------------- 176 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-------------------- 176 (414)
.+|+.+.|.. .++.+...+|.++++|+.++|..+ ++.....+|.++.+|+.+.+..+-
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~ 148 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPE 148 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCT
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCc
Confidence 4688888874 466566677888899999988755 553445567777777666554321
Q ss_pred -CCCCCchhccCCCCCCEEecccccCCCCCCchhcc-c-ccccccccccccccccCc-----------------------
Q 039087 177 -FSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFN-K-KLDAIFVNNNQFSGELPQ----------------------- 230 (414)
Q Consensus 177 -l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~-~-~L~~L~l~~n~l~~~~~~----------------------- 230 (414)
+...-...|.++.+|+.+.+..+. . .++...|. . +|+.+.+..+ ++ .+.+
T Consensus 149 ~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i~~ 224 (394)
T 4fs7_A 149 GVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYYLGD 224 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCEECT
T ss_pred cccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceEeeh
Confidence 111112456677788888876553 2 34444333 2 2666665544 11 1111
Q ss_pred -ccCCCCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCC
Q 039087 231 -NLGNSPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSD 309 (414)
Q Consensus 231 -~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 309 (414)
.+....|+.+.+..+ ++ .+....+..+..++.+.+..+... .....|..+..++.+....+.+ ....|..+.+
T Consensus 225 ~~~~~~~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~ 298 (394)
T 4fs7_A 225 FALSKTGVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSS 298 (394)
T ss_dssp TTTTTCCCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTT
T ss_pred hhcccCCCceEEECCC-ce-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---cccccccccc
Confidence 111123444444322 12 222333333456666666554332 2233344444444444433221 1223444445
Q ss_pred CcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCC
Q 039087 310 IEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSAN 366 (414)
Q Consensus 310 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N 366 (414)
|+.+.+..+ ++..-..+|..+.+|+.++|.++ ++.+...+|..+.+|+.+++..|
T Consensus 299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 555555433 33222334445555555555432 44444444555555555555433
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.93 E-value=2.5e-08 Score=96.78 Aligned_cols=107 Identities=7% Similarity=0.080 Sum_probs=75.0
Q ss_pred cccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeE
Q 039087 258 TNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNL 337 (414)
Q Consensus 258 ~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 337 (414)
.+..|+.+.+.++... .-...|..+++|+.+.+. +.++.+....|.++.+|+.+++..+ ++..-..+|..+.+|+++
T Consensus 263 ~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp TCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 3466777777655443 344567777788888875 4455455667788888888888764 553445678888888888
Q ss_pred ecccccCcccchhhhhhcccCcEEEecCCCC
Q 039087 338 TVAFNFFSGFSQECARLLIRNVGFDFSANCI 368 (414)
Q Consensus 338 ~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l 368 (414)
.|..+ ++.+...+|..+.+|+.+++.+|..
T Consensus 340 ~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 340 AIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp EECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred EECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 88654 7767777888888888888887654
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.91 E-value=1.6e-08 Score=98.06 Aligned_cols=220 Identities=10% Similarity=0.042 Sum_probs=147.0
Q ss_pred ccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcc-c
Q 039087 134 VKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFN-K 212 (414)
Q Consensus 134 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~-~ 212 (414)
..+|..+++|+.+.+..+. +.....+|.++.+|+.+++..| ++......|.++..|+.+.+..+... +....+. .
T Consensus 155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~ 230 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKT 230 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTC
T ss_pred hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccC
Confidence 3456777778888876553 3244556777778888877665 44344556777777777777665432 2222222 3
Q ss_pred ccccccccccccccccCcccCC-CCCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEc
Q 039087 213 KLDAIFVNNNQFSGELPQNLGN-SPASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDV 291 (414)
Q Consensus 213 ~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 291 (414)
.|+.+.+..+.-. .....+.. ..++.+.+..+.. .+....+..+..++.+.+..+.+. ...|..+.+|+.+.+
T Consensus 231 ~l~~i~ip~~~~~-i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 231 GVKNIIIPDSFTE-LGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKL 304 (394)
T ss_dssp CCCEEEECTTCCE-ECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEE
T ss_pred CCceEEECCCcee-cccccccccccceeEEcCCCcc--eeeccccccccccceeccCceeec---ccccccccccccccc
Confidence 3666666543211 11122222 4588888877643 344444444578888887766543 346778889999999
Q ss_pred cCCCCCCCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCC
Q 039087 292 SFNSLMGHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSAN 366 (414)
Q Consensus 292 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N 366 (414)
..+ ++.+-..+|.++.+|+.+++.++ ++..-..+|.++.+|+.+++..| ++.+...+|..+.+|+.+++..+
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 765 65566678889999999999754 66444678889999999999877 77777888999889999998754
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=4.2e-10 Score=107.81 Aligned_cols=83 Identities=19% Similarity=0.283 Sum_probs=55.8
Q ss_pred ccCCcEEEccCCcCcccCcccc---CCCCCCCEEEccCCCCCCC----CcccccCCCCCcEEEcccCCCCCCCchhhhC-
Q 039087 259 NSKLKEILFLNNQLTGCIPEGV---GLFSEMQVFDVSFNSLMGH----LPDTISCMSDIEILNLAHNQLSGELPDLVCS- 330 (414)
Q Consensus 259 ~~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~- 330 (414)
+++|++|+|.+|.+.+..+..+ ..+++|++|+|+.|.+++. ++..+..+++|++|+|++|.|++..-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 4678888888887764332222 2467888889888888753 3333455688999999988887544444443
Q ss_pred CCCCCeEeccccc
Q 039087 331 LRTLMNLTVAFNF 343 (414)
Q Consensus 331 l~~L~~L~L~~N~ 343 (414)
+ ...++++.|.
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 4668888887
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=6.1e-09 Score=90.04 Aligned_cols=109 Identities=15% Similarity=0.143 Sum_probs=51.6
Q ss_pred cCCcEEEccCC-cCccc----CccccCCCCCCCEEEccCCCCCCC----CcccccCCCCCcEEEcccCCCCCC----Cch
Q 039087 260 SKLKEILFLNN-QLTGC----IPEGVGLFSEMQVFDVSFNSLMGH----LPDTISCMSDIEILNLAHNQLSGE----LPD 326 (414)
Q Consensus 260 ~~L~~L~Ls~N-~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~ 326 (414)
++|++|+|++| .+... +...+...++|++|+|++|.|... +...+...++|++|+|++|.|.+. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 44555555554 44321 223334445555555555555421 222333344555555555555532 233
Q ss_pred hhhCCCCCCeEec--ccccCcccc----hhhhhhcccCcEEEecCCCC
Q 039087 327 LVCSLRTLMNLTV--AFNFFSGFS----QECARLLIRNVGFDFSANCI 368 (414)
Q Consensus 327 ~l~~l~~L~~L~L--~~N~l~~~~----~~~~~~~~~L~~L~ls~N~l 368 (414)
.+...++|++|+| ++|.|.... .+.+...+.|++|+|++|.|
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4444555666666 555555432 22333344556666665554
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.67 E-value=2.4e-07 Score=89.74 Aligned_cols=125 Identities=10% Similarity=0.073 Sum_probs=84.5
Q ss_pred CCCEEEcccCcCCCCCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEc
Q 039087 236 PASVINLANNRLSGSIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNL 315 (414)
Q Consensus 236 ~L~~L~ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 315 (414)
.|+.+.+..+.. .+....+..+++|+.+.+. +.++..-...|..+.+|+.+++..+ ++.+-..+|.++.+|+++.+
T Consensus 266 ~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 266 YLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 467777655432 3444455556899999996 4455455678899999999999865 66566788999999999999
Q ss_pred ccCCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCC
Q 039087 316 AHNQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCI 368 (414)
Q Consensus 316 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l 368 (414)
..+ ++..-..+|.++.+|+.+++.+|... ...+....+|+.+.+..|.+
T Consensus 342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred Ccc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 765 66455678999999999999988643 13455566788887776654
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.53 E-value=1.9e-06 Score=82.80 Aligned_cols=77 Identities=9% Similarity=0.023 Sum_probs=43.6
Q ss_pred cEEEEEcCCCCCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecc
Q 039087 118 VVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLR 197 (414)
Q Consensus 118 ~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 197 (414)
+++.+.+.. .++.+...+|.++.+|+.++|..+ ++.....+|.++ +|+.+.+..+ ++..-...|.. .+|+.+.+.
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFP 121 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCC
Confidence 355555543 344445566777788888887644 554455567665 5666666533 44222333443 367777765
Q ss_pred cc
Q 039087 198 FN 199 (414)
Q Consensus 198 ~N 199 (414)
.+
T Consensus 122 ~~ 123 (379)
T 4h09_A 122 GA 123 (379)
T ss_dssp TT
T ss_pred Cc
Confidence 44
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=2.2e-08 Score=86.46 Aligned_cols=112 Identities=13% Similarity=0.207 Sum_probs=81.9
Q ss_pred CCCCEEEcccC-cCCCCC----chhhhhcccCCcEEEccCCcCccc----CccccCCCCCCCEEEccCCCCCCC----Cc
Q 039087 235 SPASVINLANN-RLSGSI----PASFGITNSKLKEILFLNNQLTGC----IPEGVGLFSEMQVFDVSFNSLMGH----LP 301 (414)
Q Consensus 235 ~~L~~L~ls~N-~l~~~~----p~~~~~~~~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p 301 (414)
..|++|+|++| .+...- ...+.. .++|++|+|++|.+... +...+...++|++|+|++|.|... +.
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHh-CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 45788888888 776432 222322 36789999999988642 334455668899999999998753 45
Q ss_pred ccccCCCCCcEEEc--ccCCCCCC----CchhhhCCCCCCeEecccccCccc
Q 039087 302 DTISCMSDIEILNL--AHNQLSGE----LPDLVCSLRTLMNLTVAFNFFSGF 347 (414)
Q Consensus 302 ~~l~~l~~L~~L~L--s~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~ 347 (414)
..+...++|++|+| ++|.|... +...+...++|++|+|++|.+...
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 66777788999999 88999854 345566678999999999998643
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.45 E-value=2.2e-08 Score=91.29 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=49.3
Q ss_pred CCCCCCEEEccCCCCCC--CCcccccCCCCCcEEEcccCCCCCCCchhhhCCC--CCCeEecccccCcccch-------h
Q 039087 282 LFSEMQVFDVSFNSLMG--HLPDTISCMSDIEILNLAHNQLSGELPDLVCSLR--TLMNLTVAFNFFSGFSQ-------E 350 (414)
Q Consensus 282 ~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~~~-------~ 350 (414)
.+++|+.|+|++|+|++ .++..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+++..+ .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45667777777777765 2345555677777777777777743 2233333 77777777777775332 3
Q ss_pred hhhhcccCcEEE
Q 039087 351 CARLLIRNVGFD 362 (414)
Q Consensus 351 ~~~~~~~L~~L~ 362 (414)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 456667776654
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=3.7e-07 Score=83.13 Aligned_cols=78 Identities=19% Similarity=0.223 Sum_probs=51.8
Q ss_pred ccCCcEEEccCCcCcc--cCccccCCCCCCCEEEccCCCCCCCCcccccCCC--CCcEEEcccCCCCCCCc-------hh
Q 039087 259 NSKLKEILFLNNQLTG--CIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMS--DIEILNLAHNQLSGELP-------DL 327 (414)
Q Consensus 259 ~~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p-------~~ 327 (414)
+++|++|+|++|+|++ .++..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.+| ..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3667777777777765 3345556677777777777777753 2233333 78888888888876544 24
Q ss_pred hhCCCCCCeEe
Q 039087 328 VCSLRTLMNLT 338 (414)
Q Consensus 328 l~~l~~L~~L~ 338 (414)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56788888876
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.28 E-value=1.9e-05 Score=75.72 Aligned_cols=226 Identities=9% Similarity=-0.011 Sum_probs=125.5
Q ss_pred ccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEecccccCCCCCCchhcc-ccc
Q 039087 136 ELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFSGPLPQDLFN-KKL 214 (414)
Q Consensus 136 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~-~~L 214 (414)
.+....+|+.+.+.. .++.+-..+|.++.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ ++ .+....|. .+|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGTDL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTCCC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccCCc
Confidence 355667899999875 466456678999999999999754 664445677776 6888887654 44 44444444 347
Q ss_pred ccccccccccccccCcccCCCC-----------------------CCEEEcccCcCCC----------------------
Q 039087 215 DAIFVNNNQFSGELPQNLGNSP-----------------------ASVINLANNRLSG---------------------- 249 (414)
Q Consensus 215 ~~L~l~~n~l~~~~~~~~~~~~-----------------------L~~L~ls~N~l~~---------------------- 249 (414)
+.+.+..+... .....+...+ ++.+.+..+....
T Consensus 116 ~~i~lp~~~~~-i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (379)
T 4h09_A 116 DDFEFPGATTE-IGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK 194 (379)
T ss_dssp SEEECCTTCCE-ECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred ccccCCCcccc-ccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence 77776543211 1111111122 2222222211100
Q ss_pred ------------CCchhhhhcccCCcEEEccCCcCcccCccccCCCCCCCEEEccCCCCCCCCcccccCCCCCcEEEccc
Q 039087 250 ------------SIPASFGITNSKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNSLMGHLPDTISCMSDIEILNLAH 317 (414)
Q Consensus 250 ------------~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 317 (414)
.+....+....+|+.+.+..+ +.......|..+..|+.+.+..+ ++.+-...|..+.+|+.+.+..
T Consensus 195 ~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~ 272 (379)
T 4h09_A 195 TGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA 272 (379)
T ss_dssp CCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC
T ss_pred cccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc
Confidence 000011111234444444332 22122344555666777766554 4434455566666777777754
Q ss_pred CCCCCCCchhhhCCCCCCeEecccccCcccchhhhhhcccCcEEEecCCCCCCC
Q 039087 318 NQLSGELPDLVCSLRTLMNLTVAFNFFSGFSQECARLLIRNVGFDFSANCIPGR 371 (414)
Q Consensus 318 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~ 371 (414)
+ ++......|..+.+|+.+.+.++.++.+...+|..+.+|+.++|..+ ++.+
T Consensus 273 ~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I 324 (379)
T 4h09_A 273 K-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTI 324 (379)
T ss_dssp C-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred c-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEE
Confidence 3 44233455667777777777777777776677777777777777543 4443
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=4.4e-06 Score=70.77 Aligned_cols=87 Identities=7% Similarity=-0.036 Sum_probs=62.3
Q ss_pred cCCcEEEccCCcCcccCccccCCCCCCCEEEccCCC-CCCCCcccccCC----CCCcEEEcccCC-CCCCCchhhhCCCC
Q 039087 260 SKLKEILFLNNQLTGCIPEGVGLFSEMQVFDVSFNS-LMGHLPDTISCM----SDIEILNLAHNQ-LSGELPDLVCSLRT 333 (414)
Q Consensus 260 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 333 (414)
..|++|+++++.++..--..+..+++|++|+|++|. |++.--..+..+ ++|++|+|++|. |++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 368888888888876555667788888888888884 664433445443 368888888874 77554455677888
Q ss_pred CCeEeccccc-Ccc
Q 039087 334 LMNLTVAFNF-FSG 346 (414)
Q Consensus 334 L~~L~L~~N~-l~~ 346 (414)
|++|+|+++. +++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 8888888875 554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=1.2e-06 Score=74.35 Aligned_cols=84 Identities=17% Similarity=0.120 Sum_probs=67.7
Q ss_pred CcEEEEEcCCCCCCCccccccCCCCCCCEEECCCCc-CCccCccccCCC----CCCCEEeCcCcc-CCCCCchhccCCCC
Q 039087 117 PVVAGIDLNHANLQGNLVKELSLLTDVNLLHLNTNR-FSGTVPETFKDL----TSLQELDLSNNQ-FSGPFPLVTLYIPN 190 (414)
Q Consensus 117 ~~l~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~~ 190 (414)
.++++||++++.++..--..+..+++|++|+|++|. |++.--..+..+ ++|++|+|++|. |++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999999987777778899999999999984 876544556654 379999999975 77554456778899
Q ss_pred CCEEeccccc
Q 039087 191 LVYLDLRFNS 200 (414)
Q Consensus 191 L~~L~Ls~N~ 200 (414)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999885
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.93 E-value=4.7e-06 Score=71.95 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=40.5
Q ss_pred ccCCCCCCCEEEccCCCCCC----CCcccccCCCCCcEEEcccCCCCCC----CchhhhCCCCCCeEecccc---cCccc
Q 039087 279 GVGLFSEMQVFDVSFNSLMG----HLPDTISCMSDIEILNLAHNQLSGE----LPDLVCSLRTLMNLTVAFN---FFSGF 347 (414)
Q Consensus 279 ~~~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N---~l~~~ 347 (414)
.+..-+.|+.|+|++|.|.+ .+.+.+..-+.|++|+|++|.|.+. +-..+..-+.|++|+|++| .|...
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 33444555555555555542 1222333344555555555555532 2223333445555655543 22221
Q ss_pred ----chhhhhhcccCcEEEecCCC
Q 039087 348 ----SQECARLLIRNVGFDFSANC 367 (414)
Q Consensus 348 ----~~~~~~~~~~L~~L~ls~N~ 367 (414)
+.+.+...+.|+.|+++.|.
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhCCCcCeEeccCCC
Confidence 22334444455555555443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.58 E-value=2.4e-05 Score=67.47 Aligned_cols=111 Identities=14% Similarity=0.190 Sum_probs=75.5
Q ss_pred CCCCEEEcccC-cCCCC----CchhhhhcccCCcEEEccCCcCccc----CccccCCCCCCCEEEccCCCCCCC----Cc
Q 039087 235 SPASVINLANN-RLSGS----IPASFGITNSKLKEILFLNNQLTGC----IPEGVGLFSEMQVFDVSFNSLMGH----LP 301 (414)
Q Consensus 235 ~~L~~L~ls~N-~l~~~----~p~~~~~~~~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p 301 (414)
..|++|+|++| .|... +-..+.. .+.|++|+|++|.|... +.+.+..-+.|++|+|+.|.|.+. +.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~-N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTT-CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhh-CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 45788888875 66532 2233332 36788888888888743 334455668899999999998742 34
Q ss_pred ccccCCCCCcEEEcccC---CCCC----CCchhhhCCCCCCeEecccccCcc
Q 039087 302 DTISCMSDIEILNLAHN---QLSG----ELPDLVCSLRTLMNLTVAFNFFSG 346 (414)
Q Consensus 302 ~~l~~l~~L~~L~Ls~N---~l~~----~~p~~l~~l~~L~~L~L~~N~l~~ 346 (414)
+.+..-..|++|+|++| .+.. .+...+..-+.|++|+++.|.+..
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~ 171 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence 55666778999999865 3442 244556677899999999887553
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.14 E-value=0.00093 Score=53.60 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=21.6
Q ss_pred CCCEEeCcCccCCCCCchhccCCCCCCEEecccccCC
Q 039087 166 SLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRFNSFS 202 (414)
Q Consensus 166 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~i~ 202 (414)
+|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4566666666666444445555666666666666554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.07 E-value=0.00069 Score=54.37 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=44.2
Q ss_pred CEEEccCCCCC-CCCcccccCCCCCcEEEcccCCCCCCCchhhhCCCCCCeEecccccCcc
Q 039087 287 QVFDVSFNSLM-GHLPDTISCMSDIEILNLAHNQLSGELPDLVCSLRTLMNLTVAFNFFSG 346 (414)
Q Consensus 287 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 346 (414)
..++.+++.++ ..+|..+. .+|++|+|++|+|+...+..|..+++|++|+|++|.+.-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47888888886 35565432 468999999999985555677888899999999998764
No 165
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL capsid, single-stranded DNA, icosahedral virus; HET: DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB: 1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A 1c8e_A 1c8f_A 1c8g_A
Probab=78.47 E-value=0.64 Score=44.48 Aligned_cols=9 Identities=44% Similarity=0.785 Sum_probs=3.3
Q ss_pred CCCCcccCC
Q 039087 42 GGGGVWIGG 50 (414)
Q Consensus 42 ~ggg~~~~~ 50 (414)
||-|.+.|.
T Consensus 36 gGVG~STG~ 44 (584)
T 4dpv_Z 36 GGVGISTGT 44 (584)
T ss_dssp EETTBCCCC
T ss_pred CCccccccc
Confidence 333333333
No 166
>1k3v_A Capsid protein VP2; icosahadral, beta sheet, icosahedral virus; 3.50A {Porcine parvovirus} SCOP: b.121.5.2
Probab=69.07 E-value=1.6 Score=43.00 Aligned_cols=6 Identities=33% Similarity=0.041 Sum_probs=2.6
Q ss_pred cCCCCC
Q 039087 48 IGGGIN 53 (414)
Q Consensus 48 ~~~~~~ 53 (414)
.|++.+
T Consensus 43 tG~W~~ 48 (579)
T 1k3v_A 43 TGTFNN 48 (579)
T ss_dssp CSCCCC
T ss_pred cccccC
Confidence 344444
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=50.75 E-value=22 Score=26.19 Aligned_cols=45 Identities=18% Similarity=0.053 Sum_probs=21.4
Q ss_pred CCccCccccCCCCCCCEEeCcCccCCCCCchhccCCCCCCEEeccc
Q 039087 153 FSGTVPETFKDLTSLQELDLSNNQFSGPFPLVTLYIPNLVYLDLRF 198 (414)
Q Consensus 153 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 198 (414)
++.+...+|.++++|+.+.|-.+ ++.+-...|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33333444555555555555432 3323334455555555555543
No 168
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.38 E-value=41 Score=24.72 Aligned_cols=47 Identities=17% Similarity=0.115 Sum_probs=37.5
Q ss_pred CCCCccccccCCCCCCCEEECCCCcCCccCccccCCCCCCCEEeCcCc
Q 039087 128 NLQGNLVKELSLLTDVNLLHLNTNRFSGTVPETFKDLTSLQELDLSNN 175 (414)
Q Consensus 128 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 175 (414)
.++.+-...|.+++.|+.+.|-.+ ++..-..+|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 455556678999999999999875 55466778999999999999754
No 169
>1g3p_A G3P, minor coat protein; filamentous bacteriophage, phage display, selectively infective phages, viral protein; HET: TRO; 1.46A {Enterobacteria phage M13} SCOP: b.37.1.1 b.37.1.1 PDB: 2g3p_A 3dgs_A 3knq_A 1fgp_A
Probab=34.41 E-value=8.8 Score=30.94 Aligned_cols=7 Identities=29% Similarity=0.591 Sum_probs=2.6
Q ss_pred EECCCCc
Q 039087 146 LHLNTNR 152 (414)
Q Consensus 146 L~Ls~n~ 152 (414)
..+.+|+
T Consensus 134 ~~~~~~~ 140 (217)
T 1g3p_A 134 FMFQNNR 140 (217)
T ss_dssp EEETTEE
T ss_pred eeecccc
Confidence 3333333
Done!