BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039088
(409 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 212 CAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADNNSN 263
C VCKE + LG R++PC H++H CI+PWL +SCPVCR L N +
Sbjct: 18 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 65.9 bits (159), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 185 NPPASKAAIENMPSILI--DSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPW 242
NPPASK +I+ +P IL+ D V E C +C + G A E+PC H +H C+ W
Sbjct: 14 NPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIW 73
Query: 243 LSLRNSCPVCRHELP 257
L +CPVCR P
Sbjct: 74 LQKSGTCPVCRCMFP 88
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 51.6 bits (122), Expect = 9e-07, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 212 CAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPA 258
C +C E G + R +PC H++H C+ WL CP+CR ++ A
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 206 VELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVC 252
+ L CAVC E F+ E PCKH +H C++ WL +R CP+C
Sbjct: 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 212 CAVCKEAFELGSEAREMP-CKHIYHSDCILPWLSLRNSCPVCR 253
CAVC E G EAR +P C H +H++C+ WL ++CP+CR
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCR 253
++ C VC FE R +PC H +H+ C+ WL +CP+CR
Sbjct: 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 206 VELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADNNS 262
+E E C +C E F EA + C H + S CI W+ + CP+CR ++ + S
Sbjct: 61 LENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYS 114
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 206 VELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADNNS 262
+E E C +C E F EA + C H + S CI W+ + CP+CR ++ + S
Sbjct: 50 LENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYS 103
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 206 VELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADNNS 262
+E E C +C E F EA + C H + S CI W+ + CP+CR ++ + S
Sbjct: 50 LENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYS 103
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 212 CAVCKEAFELGSEAREMP-CKHIYHSDCILPWLSLRNSCPVCRHELPADNNSNQSNVDE 269
C +C E F + A +P C H Y S CI +LS + CP C + + N +DE
Sbjct: 25 CGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDE 80
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADNNSN 263
E C +C + G +PC H + CI W +CP+CR ++ N S+
Sbjct: 15 EEECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 205 YVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWL-SLRNSCPVCRHEL 256
Y E+ S +CK E + + PC H+ + C+ W S CP CR E+
Sbjct: 17 YCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 205 YVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWL-SLRNSCPVCRHEL 256
Y E+ S +CK E + + PC H+ + C+ W S CP CR E+
Sbjct: 325 YCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 205 YVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWL-SLRNSCPVCRHEL 256
Y E+ S +CK E + + PC H+ + C+ W S CP CR E+
Sbjct: 331 YCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 205 YVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWL-SLRNSCPVCRHEL 256
Y E+ S +CK E + + PC H+ + C+ W S CP CR E+
Sbjct: 325 YCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 31.6 bits (70), Expect = 0.81, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 230 CKHIYHSDCILPWLSLRNSCPVCRHE 255
C H +H+ C+ W+ N CP+C+ +
Sbjct: 48 CNHSFHNCCMSLWVKQNNRCPLCQQD 73
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 212 CAVCKEAFELGSEAREMPCKHIYHSDCI--LPWLSLRNSCPVCRHELPAD 259
CA+C + +PCKH++ C+ WL R C +CR E+P D
Sbjct: 18 CAIC---LQTCVHPVSLPCKHVFCYLCVKGASWLGKR--CALCRQEIPED 62
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 212 CAVCKEAF-ELGSEAR---EMPCKHIYHSDCILPWLSLRNSCPVCRHEL 256
C +C + + E+ R C H++ S C+ L N+CP CR ++
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 230 CKHIYHSDCILPWLSLRNSCPVCRHE 255
C H +H CI WL R CP+ E
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPLDNRE 82
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 212 CAVCKEAF-ELGSEAR---EMPCKHIYHSDCILPWLSLRNSCPVCRHEL 256
C +C + + E+ R C H++ S C+ L N+CP CR ++
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 212 CAVCKEAF-ELGSEAR---EMPCKHIYHSDCILPWLSLRNSCPVCRHEL 256
C +C + + E+ R C H++ S C+ L N+CP CR ++
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 212 CAVCKEAF-ELGSEAR---EMPCKHIYHSDCILPWLSLRNSCPVCRHEL 256
C +C + + E+ R C H++ S C+ L N+CP CR ++
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 230 CKHIYHSDCILPWLSLRNSCPVCRHE 255
C H +H CI WL R CP+ E
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPLDNRE 92
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 230 CKHIYHSDCILPWLSLRNSCPVCRHE 255
C H +H CI WL R CP+ E
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPLDNRE 90
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 212 CAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNS-CPVCRHE-LPADNNS 262
C +C+ ++ E CKH++ CIL L + S CP CR+ P D S
Sbjct: 26 CQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 230 CKHIYHSDCILPWLSLRNSCPVCRHE 255
C H +H CI WL R CP+ E
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPLDNRE 100
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 230 CKHIYHSDCILPWLSLRNSCPVCRHE 255
C H +H CI WL R CP+ E
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPLDNRE 109
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWL-SLRNSCPVCRHEL 256
E+ S +CK E + + PC H+ + C+ W S CP CR E+
Sbjct: 21 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWL-SLRNSCPVCRHEL 256
E+ S +CK E + + PC H+ + C+ W S CP CR E+
Sbjct: 22 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 230 CKHIYHSDCILPWLSLRNSCPVCRHE 255
C H +H CI WL R CP+ E
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPLDNRE 98
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 230 CKHIYHSDCILPWLSLRNSCPVCRHE 255
C H +H CI WL R CP+ E
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPLDNRE 98
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 212 CAVCKEAF-ELGSEAR---EMPCKHIYHSDCILPWLSLRNSCPVCRHEL 256
C +C + + E+ R C H++ S C+ L N+CP CR ++
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 212 CAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLR---NSCPVCRHEL 256
C +C EL E C HI+ C+L L+ + + CP+C++++
Sbjct: 24 CPIC---LELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWL-SLRNSCPVCRHEL 256
E+ S +CK E + + PC H+ + C+ W S CP CR E+
Sbjct: 329 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWL-SLRNSCPVCRHEL 256
E+ S +CK E + + PC H+ + C+ W S CP CR E+
Sbjct: 329 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|3G6T|A Chain A, Gr Gamma Dna-Binding Domain:fkbp5 16bp Complex-34
pdb|3G6T|B Chain B, Gr Gamma Dna-Binding Domain:fkbp5 16bp Complex-34
Length = 91
Score = 28.5 bits (62), Expect = 6.4, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 212 CAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRH 254
C CK F+ E R+ +DCI+ + R +CP CR+
Sbjct: 22 CGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIR-RKNCPACRY 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,280,147
Number of Sequences: 62578
Number of extensions: 272036
Number of successful extensions: 465
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 40
length of query: 409
length of database: 14,973,337
effective HSP length: 101
effective length of query: 308
effective length of database: 8,652,959
effective search space: 2665111372
effective search space used: 2665111372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)