BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039088
(409 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 151 bits (382), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 101/268 (37%), Positives = 154/268 (57%), Gaps = 25/268 (9%)
Query: 5 VSSSSYWCYRCSRFVRVF----SRDDVVSCPDCDGGFVEEIENTPRGIHSTDIHRGPGPG 60
V++ ++CY+C+R V V S D +CP C+ GF+EE +N S ++ P
Sbjct: 18 VTNKPFFCYQCNRTVNVTISPPSSD--PTCPICNEGFLEEYDNPNPNQGSGFLNPNPNSI 75
Query: 61 PGRMRF-----PAAAMYMIGSSNNNSNNIINSSNRSNRDPNNSAGPVLRRSRRTG-GDRS 114
P F P A++ + +++S +S+ ++ DPNN P L R+G GD
Sbjct: 76 PFHDLFLTLSDPFASLLPLLFPSSSSTT---TSSSASIDPNN---PSLSGPTRSGRGDPF 129
Query: 115 PFNPVIVLRGPVNGDVDNNGNGYELYYDDGEG-SGLRPLPRSMTEFLLGSGFERLLEQLS 173
F+P ++ +N D+ ++G E + G R LP ++ ++ +G G E+L++QL+
Sbjct: 130 AFDPFTFIQNHLN-DLRSSGAQIEFVIQNNPSDQGFR-LPANIGDYFIGPGLEQLIQQLA 187
Query: 174 QIDMNGIGGFENPPASKAAIENMPSILIDSSYVELE-SHCAVCKEAFELGSEAREMPCKH 232
+ D N G PPASK+AIE +P + I S + E + CAVC + FE G+EA++MPCKH
Sbjct: 188 ENDPNRYG---TPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKH 244
Query: 233 IYHSDCILPWLSLRNSCPVCRHELPADN 260
+YH DC+LPWL L NSCPVCRHELP D+
Sbjct: 245 LYHKDCLLPWLELHNSCPVCRHELPTDD 272
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 138/262 (52%), Gaps = 29/262 (11%)
Query: 10 YWCYRCSRFVRV-FSRDDVVSCPDCDGGFVEEIENTPRGIHSTDIHRGPGPGPGRMRFPA 68
++CY+C++ V + S CP C+ GF+EE E+ P S + + P FP
Sbjct: 21 FFCYQCNQTVTISISSSADPFCPICNQGFLEEYED-PNPNQSLNFN----PNSSDSFFPM 75
Query: 69 AAMY------MIGSSNNNSNNIINSSNRSNRDPNNSAGPVLR---RSRRTGGDRSPFNPV 119
A + + GSS ++ S D + GP ++ RS + F+P
Sbjct: 76 ADPFSTLLPLIFGSS---------AAAPSGMDFMSLFGPSMQPQARSTQQNPQSDAFDPF 126
Query: 120 IVLRGPVNGDVDNNGNGYELYYDDGEGSGLRPLPRSMTEFLLGSGFERLLEQLSQIDMNG 179
L+ + + ++G +E ++ +P + ++ G G E+L++QL++ D N
Sbjct: 127 TFLQNHLQT-LRSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNR 185
Query: 180 IGGFENPPASKAAIENMPSILIDSSYVELE-SHCAVCKEAFELGSEAREMPCKHIYHSDC 238
G PPASK+AI+ +P++ + ++ E + CAVC + FE GS+ ++MPCKH++H DC
Sbjct: 186 YG---TPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDC 242
Query: 239 ILPWLSLRNSCPVCRHELPADN 260
+LPWL L NSCPVCR ELP D+
Sbjct: 243 LLPWLELHNSCPVCRFELPTDD 264
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 5/102 (4%)
Query: 179 GIGGFEN---PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYH 235
G+ +E+ PPA+KA +E++P +I S+ +L+ C VC FE EMPC H++H
Sbjct: 54 GLVDWEHHLPPPAAKAVVESLPRTVISSAKADLK--CPVCLLEFEAEETVIEMPCHHLFH 111
Query: 236 SDCILPWLSLRNSCPVCRHELPADNNSNQSNVDESDNGENGQ 277
S+CILPWLS NSCP+CRHELP D++S + + + + Q
Sbjct: 112 SNCILPWLSKTNSCPLCRHELPTDDDSYEEHKKDKARRQQQQ 153
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 124/294 (42%), Gaps = 51/294 (17%)
Query: 3 SIVSSSSYWCYRCSRFVRVFSRDDVVSCPDCDGGFVEEIENTPRGIHS-------TDIHR 55
++ + Y+C+ C+ + R +CP CD GF+EE+ T R S TD +R
Sbjct: 4 ALPEAGRYFCHSCT--AEITPRLPEYTCPRCDSGFIEELPETSRNSESNSSNNSGTDQNR 61
Query: 56 GPGPGPGRMRFPAAAMY---------------MIGSSNNNSNNIINSSNRSN--RDPNNS 98
+F + Y M G+S S R + R +
Sbjct: 62 PSFENIESAQFTLPSGYGQVTFGIFNEGLDFPMFGTSGPVEETRDGESRREHQSRQRYGA 121
Query: 99 AGPVLRRSRRTGGDRSPFNPVI--VLRGPVNGDVDNNGNGYELYYDDGEGSGLRP---LP 153
P R S R G R+ P + +++ VNG + G+ P L
Sbjct: 122 RQPRARMSTRRGAGRNEGVPTLEGIIQQLVNGIIAPTAMS---------NLGVGPWGVLH 172
Query: 154 RSMTEFLLGS-GFERLLEQLSQIDMNGIGGFEN---PPASKAAIENMPSILIDSSYVELE 209
+ ++ G+ G + ++ QL + FEN PPA I+ +P+I I +V
Sbjct: 173 SNPMDYAWGANGLDTIITQL-------LNQFENTGPPPADTDKIQALPTIQITEEHVGFG 225
Query: 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADNNSN 263
C VCKE + +G R++PC H++H+DCI+PWL ++CPVCR L N +
Sbjct: 226 LECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTAT 279
>sp|Q6AXU4|RN181_RAT E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181
PE=1 SV=1
Length = 165
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 5/102 (4%)
Query: 179 GIGGFEN---PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYH 235
G+ +E+ PPA+KA +E++P +I SS EL+ C VC FE EMPC H++H
Sbjct: 54 GLVDWEHHLPPPAAKAVVESLPRTVIRSSKAELK--CPVCLLEFEEEETVIEMPCHHLFH 111
Query: 236 SDCILPWLSLRNSCPVCRHELPADNNSNQSNVDESDNGENGQ 277
S+CILPWLS NSCP+CRHELP D++S + + + + Q
Sbjct: 112 SNCILPWLSKTNSCPLCRHELPTDDDSYEEHKKDKARRQQQQ 153
>sp|Q3T0W3|RN181_BOVIN E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2
SV=1
Length = 153
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 57/81 (70%), Gaps = 2/81 (2%)
Query: 186 PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSL 245
PPA+K A+EN+P +I S EL+ C VC FE A EMPC H++HS+CILPWLS
Sbjct: 52 PPAAKTAVENLPRTVIRGSQAELK--CPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSK 109
Query: 246 RNSCPVCRHELPADNNSNQSN 266
NSCP+CRHELP D+++ + +
Sbjct: 110 TNSCPLCRHELPTDDDTYEEH 130
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 91.7 bits (226), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Query: 172 LSQIDMNGIGGFEN---PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREM 228
L I +G EN PPA K I ++P++ + V++ C VCKE + + E R++
Sbjct: 185 LDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQL 244
Query: 229 PCKHIYHSDCILPWLSLRNSCPVCRHELPADNNSNQSNVDES 270
PC H +HS CI+PWL L ++CPVCR L ++++ QS E+
Sbjct: 245 PCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQSQSTEA 286
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 91.7 bits (226), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 121/269 (44%), Gaps = 47/269 (17%)
Query: 30 CPDCDGGFVEEIENTP--------RGIHSTDIHRGPGPGPGRMRFPAAAMYMIGSSNNNS 81
CP CD GF+EE+ + R +ST H M++ S
Sbjct: 38 CPRCDSGFIEEVTDDSSFLGGGGSRTDNSTATHFA-----ELWDHLDHTMFLQDFRPFLS 92
Query: 82 NNIINSSNRSNRDPNNSAG-----------PVLRRSRRTGGDRSPFNPVI--VLRGPVNG 128
+N ++ NR+N + + P+ RR R G R +P I +++ G
Sbjct: 93 SNPLDQDNRANERGHQTHTDFWGPSRPPRLPMTRRYRSRGSTRPDRSPAIEGIIQQIFAG 152
Query: 129 DVDNN---GNGYELYYDDGEGSGLRPLPRSMTEFLLG-SGFERLLEQLSQIDMNGIGGFE 184
N+ G+ + + SG+ L + ++ G +G + ++ QL +G E
Sbjct: 153 FFANSAIPGSPHPFSW-----SGM--LHSNPGDYAWGQTGLDAIVTQL-------LGQLE 198
Query: 185 N---PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILP 241
N PPA K I ++P++ + V C VCKE + + + R++PC H +HS CI+P
Sbjct: 199 NTGPPPADKEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVP 258
Query: 242 WLSLRNSCPVCRHELPADNNSNQSNVDES 270
WL L ++CPVCR L ++++ Q+ E+
Sbjct: 259 WLELHDTCPVCRKSLNGEDSTRQTQSSEA 287
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 186 PPASKAAIENMPSILIDSSYVE---LESHCAVCKEAFELGSEAREMPCKHIYHSDCILPW 242
PPASK +E +P I+ ++ E+ C +CKE +G + +E+PCKH +H C+ PW
Sbjct: 201 PPASKEVVEKLPVIIFTEELLKKFGAEAECCICKENLVIGDKMQELPCKHTFHPPCLKPW 260
Query: 243 LSLRNSCPVCRHELPADNNSNQ 264
L NSCP+CRHELP D+ +
Sbjct: 261 LDEHNSCPICRHELPTDDQKYE 282
>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8
PE=1 SV=1
Length = 334
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 162 GSGFERLLEQLSQIDMNGIGGFEN-PPASKAAIENMPSILIDSSYVELESHCAVCKEAFE 220
+G+E LL+ L++ D G GG PPA+K+AIE + + + SS E+ CAVCK+
Sbjct: 206 AAGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMV 265
Query: 221 LGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADN 260
+G +++PC H YH DCI+PWL RNSCPVCR +L D+
Sbjct: 266 MGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDD 305
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 2 SSIVSSSSYWCYRCSRFVRVFSRDDVVSCPDCDGGFVEEIENTPRGIHS 50
SS +++S+WCY C++ V V + DD V C +C+ GFVE I+ TP S
Sbjct: 7 SSPDATASHWCYHCNKRVVVETLDDFVVCCECNKGFVESIQPTPAAYSS 55
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 175 IDMNGIGGFE-----NPPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMP 229
ID+ + E PPASK +E++P + + + C VC FE G R++P
Sbjct: 37 IDLGAVDFTEWDQRLPPPASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLP 96
Query: 230 CKHIYHSDCILPWLSLRNSCPVCRHELPADN 260
C+H++HS CILPWL NSCP+CRHELP D+
Sbjct: 97 CEHLFHSACILPWLGKTNSCPLCRHELPTDS 127
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 50/75 (66%)
Query: 186 PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSL 245
PPA+KA ++++P ++I + C VC FE REMPCKH++H+ CILPWL+
Sbjct: 53 PPAAKAVVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNK 112
Query: 246 RNSCPVCRHELPADN 260
NSCP+CR ELP DN
Sbjct: 113 TNSCPLCRLELPTDN 127
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 115/285 (40%), Gaps = 44/285 (15%)
Query: 10 YWCYRCSRFVRVFSRDDVVSCPDCDGGFVEEIENTPRGIHSTDIHRGPGPGP---GRMRF 66
Y+C+ CS V + R CP C+ GF+EE+ P +T+ P P R F
Sbjct: 11 YFCHCCS--VEIVPRLPDYICPRCESGFIEEL---PEETRNTENGSAPSTAPTDQNRQPF 65
Query: 67 PAAAMYMIGSSNNNSNNIINSSNRSNRDPNNSAG--------PVLRR-----SRRTGGDR 113
++ S + S P G P RR SR G R
Sbjct: 66 ENVDQHLFTLPQGYSQFAFGIFDDSFEIPTFPPGAQADDGRDPESRREREHQSRHRYGAR 125
Query: 114 SPFNPVIVLRGP--------VNGDVDNNGNGYELYYDDGEGSGLRP---LPRSMTEFLLG 162
P + R + G + NG + GL P L + ++ G
Sbjct: 126 QPRARLTARRATGRHEGVPTLEGIIQQLVNGI-ISPAAVPSLGLGPWGVLHSNPMDYAWG 184
Query: 163 S-GFERLLEQLSQIDMNGIGGFEN---PPASKAAIENMPSILIDSSYVELESHCAVCKEA 218
+ G + ++ QL + FEN PPA K I+ +P++ + +V C VCKE
Sbjct: 185 ANGLDTIITQL-------LNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKED 237
Query: 219 FELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADNNSN 263
+ LG R++PC H++H CI+PWL +SCPVCR L N +
Sbjct: 238 YALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 282
>sp|Q9P0P0|RN181_HUMAN E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1
SV=1
Length = 153
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 140 YYDDGEGSGLRPLPRSMTEFLLGSGFERLLEQLSQIDMNGIGGFEN---PPASKAAIENM 196
Y+D+ + P + T LL L ++ D+ + +++ PPA+K +EN+
Sbjct: 4 YFDEHDCEPSDPEQETRTNMLLELA-RSLFNRMDFEDLGLVVDWDHHLPPPAAKTVVENL 62
Query: 197 PSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHEL 256
P +I S EL+ C VC FE A EMPC H++HS CILPWLS NSCP+CR+EL
Sbjct: 63 PRTVIRGSQAELK--CPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYEL 120
Query: 257 PADNNSNQSNVDESDNGENGQ 277
P D+++ + + + + Q
Sbjct: 121 PTDDDTYEEHRRDKARKQQQQ 141
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 49/75 (65%)
Query: 186 PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSL 245
PPA+K +E++P + + + C VC FE G R++PC+H++HS CILPWL
Sbjct: 53 PPAAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGK 112
Query: 246 RNSCPVCRHELPADN 260
NSCP+CRHELP D+
Sbjct: 113 TNSCPLCRHELPTDS 127
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 172 LSQIDMNGIGGFEN---PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREM 228
L I + FEN PPA I+ +P+I I +V C VCKE + +G R++
Sbjct: 184 LDTIITQLLNQFENTGPPPADTEKIQALPTIQITEEHVGSGLECPVCKEDYTVGESVRQL 243
Query: 229 PCKHIYHSDCILPWLSLRNSCPVCRHELPADNNSN 263
PC H++H+DCI+PWL ++CPVCR L N +
Sbjct: 244 PCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTAT 278
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 3 SIVSSSSYWCYRCSRFVRVFSRDDVVSCPDCDGGFVEEIENT 44
++ + Y+C+ C+ + R +CP CD GF+EE+ T
Sbjct: 4 ALPEAGRYFCHSCT--AEIIPRLPEYTCPRCDSGFIEELPET 43
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 10/105 (9%)
Query: 162 GSGFERLLEQLSQIDMNGIGGFEN---PPASKAAIENMPSILIDSSYVELESHCAVCKEA 218
+G + ++ QL + FEN PPA I+ +P+I I +V C VCKE
Sbjct: 182 ANGLDTIITQL-------LNQFENTGPPPADNEKIQALPTIQITEEHVGSGLECPVCKED 234
Query: 219 FELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADNNSN 263
+ +G R++PC H++H+DCI+PWL ++CPVCR L N +
Sbjct: 235 YTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTAT 279
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 3 SIVSSSSYWCYRCSRFVRVFSRDDVVSCPDCDGGFVEEIENT 44
++ + Y+C+ C+ + R +CP CD GF+EE+ T
Sbjct: 4 ALPKAGRYFCHSCT--AEITPRLPEYTCPRCDSGFIEELPET 43
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 172 LSQIDMNGIGGFEN---PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREM 228
L I + FEN PPA K I+ +P++ + +V C VCK+ + LG R++
Sbjct: 186 LDAIITQLLNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGERVRQL 245
Query: 229 PCKHIYHSDCILPWLSLRNSCPVCRHELPADNNSN 263
PC H++H CI+PWL +SCPVCR L N +
Sbjct: 246 PCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTAT 280
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 172 LSQIDMNGIGGFEN---PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREM 228
L I + FEN PPA K I+ +P++ + +V C VCK+ + LG R++
Sbjct: 189 LDAIITQLLNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQL 248
Query: 229 PCKHIYHSDCILPWLSLRNSCPVCRHELPADNNSN 263
PC H++H CI+PWL +SCPVCR L N +
Sbjct: 249 PCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTAT 283
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 177 MNGIG-GFENPPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYH 235
MNGI E P ASK AI +P I S + C+VCKE E G + R +PCKH +H
Sbjct: 34 MNGIDMEIEVPEASKRAILELPVHEIVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFH 93
Query: 236 SDCILPWLSLRNSCPVCRHELPADN 260
+CIL WL NSCP+CR+EL D+
Sbjct: 94 EECILLWLKKTNSCPLCRYELETDD 118
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 164 GFERLLEQLSQIDMNGIGGFENP-PASKAAIENMPSILIDSSYVELESHCAVCKEAFELG 222
G + ++ QL M G P PA + I M ++ E C +C E F++
Sbjct: 351 GLDDIISQL----MEQAQGHNAPAPAPEDVIAKMKVQKPPKELIDEEGECTICMEMFKIN 406
Query: 223 SEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADNNSNQSNVDESD--NGEN 275
+ ++PCKH +H +CI PWL + +C +CR P D NS Q N +D NG N
Sbjct: 407 DDVIQLPCKHYFHENCIKPWLRVNGTCAICR--APVDPNSQQRNNTSTDSANGHN 459
>sp|O55176|PJA1_MOUSE E3 ubiquitin-protein ligase Praja-1 OS=Mus musculus GN=Pja1 PE=1
SV=3
Length = 578
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 158 EFLLGSGFERLLEQLSQIDMNGIGGFE------NPPASKAAIENMPSILI--DSSYVELE 209
+FL E L Q + + + NPPASK +I+ +P IL+ D V E
Sbjct: 468 QFLTYMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQE 527
Query: 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELP 257
C +C + G A E+PC H +H C+ WL +CPVCR P
Sbjct: 528 MCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 575
>sp|Q8NG27|PJA1_HUMAN E3 ubiquitin-protein ligase Praja-1 OS=Homo sapiens GN=PJA1 PE=1
SV=2
Length = 643
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 158 EFLLGSGFERLLEQLSQIDMNGIGGFE------NPPASKAAIENMPSILI--DSSYVELE 209
+FL E L Q + + + NPPASK +I+ +P IL+ D V E
Sbjct: 533 QFLTYMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQE 592
Query: 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELP 257
C +C + G A E+PC H +H C+ WL +CPVCR P
Sbjct: 593 MCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 640
>sp|Q80U04|PJA2_MOUSE E3 ubiquitin-protein ligase Praja-2 OS=Mus musculus GN=Pja2 PE=1
SV=2
Length = 707
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 158 EFLLGSGFERLLEQLSQIDMNGIGGFE------NPPASKAAIENMPSILI--DSSYVELE 209
+FL E L Q + + + NPPASK +I+ +P L+ D + + E
Sbjct: 571 QFLTYMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQE 630
Query: 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELP 257
C +C + A E+PC H +H C+ WL +CPVCR P
Sbjct: 631 QCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 678
>sp|Q5R4R1|PJA2_PONAB E3 ubiquitin-protein ligase Praja-2 OS=Pongo abelii GN=PJA2 PE=2
SV=1
Length = 708
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 158 EFLLGSGFERLLEQLSQIDMNGIGGFE------NPPASKAAIENMPSILI--DSSYVELE 209
+FL E L Q + + + NPPASK +I+ +P L+ D + + E
Sbjct: 572 QFLTYMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQE 631
Query: 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELP 257
C +C + A E+PC H +H C+ WL +CPVCR P
Sbjct: 632 QCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 679
>sp|Q63364|PJA2_RAT E3 ubiquitin-protein ligase Praja-2 OS=Rattus norvegicus GN=Pja2
PE=2 SV=1
Length = 707
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 158 EFLLGSGFERLLEQLSQIDMNGIGGFE------NPPASKAAIENMPSILI--DSSYVELE 209
+FL E L Q + + + NPPASK +I+ +P L+ D + + E
Sbjct: 571 QFLTYMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQE 630
Query: 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELP 257
C +C + A E+PC H +H C+ WL +CPVCR P
Sbjct: 631 QCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 678
>sp|O43164|PJA2_HUMAN E3 ubiquitin-protein ligase Praja-2 OS=Homo sapiens GN=PJA2 PE=1
SV=4
Length = 708
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 158 EFLLGSGFERLLEQLSQIDMNGIGGFE------NPPASKAAIENMPSILI--DSSYVELE 209
+FL E L Q + + + NPPASK +I+ +P L+ D + + E
Sbjct: 572 QFLTYMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQE 631
Query: 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELP 257
C +C + A E+PC H +H C+ WL +CPVCR P
Sbjct: 632 QCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 679
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 188 ASKAAIENMPSILIDSSYVELE---SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLS 244
A+K AI + + + E + HCAVC E+++ R +PCKH++H C+ PWLS
Sbjct: 237 AAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLS 296
Query: 245 LRNSCPVCR 253
+CP+C+
Sbjct: 297 EHCTCPMCK 305
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 188 ASKAAIENMPSILIDSSYVELE---SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLS 244
A+K AI + + + E + HCAVC E+++ R +PCKH++H C+ PWLS
Sbjct: 237 AAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLS 296
Query: 245 LRNSCPVCR 253
+CP+C+
Sbjct: 297 EHCTCPMCK 305
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 188 ASKAAIENMPSILIDSSYVELE---SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLS 244
A+K AI + + + E + HCAVC E+++ R +PCKH++H C+ PWLS
Sbjct: 237 AAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILPCKHVFHKSCVDPWLS 296
Query: 245 LRNSCPVCR 253
+CP+C+
Sbjct: 297 EHCTCPMCK 305
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 212 CAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHEL 256
C +C+ +++G +PCKH+YHS+CI WLS+ CPVC E+
Sbjct: 197 CVICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEV 241
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 42/67 (62%)
Query: 201 IDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADN 260
I+ + ++ ++ C +C A+E G+E RE+PC H +H C+ WL + +CP+C++ + +
Sbjct: 342 IEHTLLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKSS 401
Query: 261 NSNQSNV 267
N ++ V
Sbjct: 402 NLDREEV 408
>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3
PE=2 SV=2
Length = 358
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 188 ASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRN 247
A +A I+ +P + + + C +C E F +G E R +PC H +H +CI WL L
Sbjct: 212 AVEALIQELPKFRLKAVPDDC-GECLICLEEFHIGHEVRGLPCAHNFHVECIDQWLRLNV 270
Query: 248 SCPVCRHEL-PADNNSNQSNVDESDNGENGQANED 281
CP CR + P + S SN+ S ++ Q N +
Sbjct: 271 KCPRCRCSVFPDLDLSALSNLQSSGTEQHSQVNTE 305
>sp|Q84TF5|RHA4A_ARATH RING-H2 zinc finger protein RHA4a OS=Arabidopsis thaliana GN=RHA4A
PE=2 SV=1
Length = 174
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 209 ESHCAVCKEAFELGSEAREMP-CKHIYHSDCILPWLSLRNSCPVCRHELPADNNSNQSNV 267
+S C VC FEL E EMP CKHI+H DCI WL N+CP+CR + + +++ S
Sbjct: 102 DSLCCVCLGEFELKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSV-SISSTKTSVD 160
Query: 268 DESDNGENGQAN 279
D++D+ ++ Q +
Sbjct: 161 DDNDHPDSPQTS 172
>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9
PE=1 SV=1
Length = 378
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 13/93 (13%)
Query: 192 AIENMPSILIDSSYVELES--------HCAVCKEAFELGSEAREMP-CKHIYHSDCILPW 242
AIE P+ L Y E+++ CAVC FE R MP C H++H+DC+ W
Sbjct: 111 AIETFPTFL----YSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVW 166
Query: 243 LSLRNSCPVCRHELPADNNSNQSNVDESDNGEN 275
LS ++CP+CR +L + + + ES +G +
Sbjct: 167 LSEHSTCPLCRADLVLNQQGDDDDSTESYSGTD 199
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 49/80 (61%), Gaps = 5/80 (6%)
Query: 189 SKAAIENMPSILIDSSYVELESH---CAVCKEAFELGSEAREMPCKHIYHSDCILPWLSL 245
S+ AI NM ++ D++ +L++ C +C+E E+ + A+++PC HI+HS C+ W
Sbjct: 265 SRRAIRNMNTLYPDATPEDLQATDNVCIICRE--EMVTGAKKLPCNHIFHSSCLRSWFQR 322
Query: 246 RNSCPVCRHELPADNNSNQS 265
+ +CP CR ++ + NQ+
Sbjct: 323 QQTCPTCRMDVLRASQPNQT 342
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 10/89 (11%)
Query: 189 SKAAIENMPSILIDSSYVELESH---CAVCKEAFELGSEAREMPCKHIYHSDCILPWLSL 245
S+ AI NM ++ D++ EL++ C +C+E E+ + A+ +PC HI+H+ C+ W
Sbjct: 265 SRRAIRNMNTLYPDATPEELQAMDNVCIICRE--EMVTGAKRLPCNHIFHTSCLRSWFQR 322
Query: 246 RNSCPVCRHE-----LPADNNSNQSNVDE 269
+ +CP CR + LPA + D+
Sbjct: 323 QQTCPTCRMDVLRASLPAQSPPPPEPADQ 351
>sp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41
PE=1 SV=1
Length = 236
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 210 SHCAVCKEAFELGSEAREMP-CKHIYHSDCILPWLSLRNSCPVCRHEL 256
+ CAVC + +ARE+P CKHI+H DC+ WL+ ++CPVCR E+
Sbjct: 106 TECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRTEV 153
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 5/71 (7%)
Query: 189 SKAAIENMPSILIDSSYVELESH---CAVCKEAFELGSEAREMPCKHIYHSDCILPWLSL 245
S+ AI NM ++ D++ EL++ C +C+E E+ S A+ +PC HI+H+ C+ W
Sbjct: 259 SRRAIRNMNTLYPDATAEELQAMDNVCIICRE--EMVSGAKRLPCNHIFHTSCLRSWFQR 316
Query: 246 RNSCPVCRHEL 256
+ +CP CR ++
Sbjct: 317 QQTCPTCRMDV 327
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 212 CAVCKEAFELGSEAREMP-CKHIYHSDCILPWLSLRNSCPVCRHELPADNNSNQSNV 267
CA+C FE R MP C H +H+ CI WLS R++CPVCR LP S+Q+++
Sbjct: 128 CAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKPGSDQNSL 184
>sp|Q9P7E1|YOF7_SCHPO Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1
Length = 583
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 12/106 (11%)
Query: 151 PLPRSMTEFLLGSGFERLLEQLSQIDMNGIGGFENPP-ASKAAIENMPSILIDSSYVELE 209
P+ R+ + F +E +L +N I G E PP AS+ +E + + +
Sbjct: 472 PVLRAPSLFTDSPTYEDMLL------LNSIIGIEKPPVASQKDLEKAGGVF---PFSGTD 522
Query: 210 SHCAVCKEAFELGSEAREMP-CKHIYHSDCILPWL-SLRNSCPVCR 253
C VC FEL E R + C H +H +CI WL S +NSCP+CR
Sbjct: 523 ERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCR 568
>sp|Q570X5|ATL58_ARATH RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2
SV=1
Length = 261
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 189 SKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMP-CKHIYHSDCILPWLSLRN 247
SK E +P ++ S+ ++S C+VC ++ + +++P CKH +H DCI WL+
Sbjct: 77 SKELREMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLWLTSHT 136
Query: 248 SCPVCRHEL 256
+CP+CR L
Sbjct: 137 TCPLCRLAL 145
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 178 NGIGGFENPPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSD 237
NG F N + I ++P I S E++ CA+C E + AR PC H +H+
Sbjct: 514 NGWKTFMNRRTAVKKINSLPEIK-GSHLQEIDDVCAICYH--EFTTSARITPCNHYFHAL 570
Query: 238 CILPWLSLRNSCPVCRHELPAD----NNSNQSN 266
C+ WL ++++CP+C ++ + +NSN SN
Sbjct: 571 CLRKWLYIQDTCPMCHQKVYIEDEIKDNSNASN 603
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 212 CAVCKEAFELGSEAREMPCKHIYHSDCILPWLS-LRNSCPVCRHEL 256
CA+C E +E G + R +PC H YH C+ PWL+ + +CPVC+ ++
Sbjct: 240 CAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 212 CAVCKEAFELGSEAREMPCKHIYHSDCILPWLS-LRNSCPVCRHELPADNNSNQSNVDES 270
CA+C + +E G + R +PC H YH C+ PWL+ + +CPVC+ ++ + S D S
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSETDSS 299
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 212 CAVCKEAFELGSEAREMPCKHIYHSDCILPWLS-LRNSCPVCRHEL 256
CA+C E +E G + R +PC H YH C+ PWL+ + +CPVC+ ++
Sbjct: 240 CAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHEL 256
++ C +C ++E G+E +PC H +HS CI+ WL +R +CP+C++ +
Sbjct: 304 DADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNI 351
>sp|Q9SN28|ATL7_ARATH RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2
SV=1
Length = 236
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 6/97 (6%)
Query: 189 SKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMP-CKHIYHSDCILPWLSLRN 247
SK E +P ++ S++ +S C+VC ++ + ++MP C H +H +CI WL+
Sbjct: 88 SKDIREMLPVVIYKESFIVKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHT 147
Query: 248 SCPVCRHEL---PADNNSNQSN--VDESDNGENGQAN 279
+CP+CR L P+ + S+QS V +N G+A+
Sbjct: 148 TCPLCRLSLIPKPSLDLSHQSTEIVSSIENSNGGEAS 184
>sp|Q6NRL6|SYVNA_XENLA E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis
GN=syvn1-a PE=2 SV=1
Length = 605
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 5/71 (7%)
Query: 189 SKAAIENMPSILIDSSYVELESH---CAVCKEAFELGSEAREMPCKHIYHSDCILPWLSL 245
S+ AI NM ++ D++ EL++ C +C+E E+ + A+ +PC HI+H+ C+ W
Sbjct: 259 SRRAIRNMNTLYPDATAEELQAMDNVCIICRE--EMVTGAKRLPCNHIFHTSCLRSWFQR 316
Query: 246 RNSCPVCRHEL 256
+ +CP CR ++
Sbjct: 317 QQTCPTCRMDV 327
>sp|Q9DBY1|SYVN1_MOUSE E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1
PE=1 SV=3
Length = 612
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 10/89 (11%)
Query: 189 SKAAIENMPSILIDSSYVELESH---CAVCKEAFELGSEAREMPCKHIYHSDCILPWLSL 245
S+ AI NM ++ D++ EL++ C +C+E E+ + A+ +PC HI+H+ C+ W
Sbjct: 265 SRRAIRNMNTLYPDATPEELQAVDNVCIICRE--EMVTGAKRLPCNHIFHTSCLRSWFQR 322
Query: 246 RNSCPVCRHE-----LPADNNSNQSNVDE 269
+ +CP CR + LPA + D+
Sbjct: 323 QQTCPTCRMDVLRASLPAQSPPPPEPADQ 351
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,278,293
Number of Sequences: 539616
Number of extensions: 8926744
Number of successful extensions: 70498
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 452
Number of HSP's that attempted gapping in prelim test: 51301
Number of HSP's gapped (non-prelim): 15536
length of query: 409
length of database: 191,569,459
effective HSP length: 120
effective length of query: 289
effective length of database: 126,815,539
effective search space: 36649690771
effective search space used: 36649690771
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)