Query 039088
Match_columns 409
No_of_seqs 403 out of 1962
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 10:04:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 6.1E-17 2.1E-21 131.9 7.2 77 182-258 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 3.1E-16 1.1E-20 122.7 2.9 69 191-259 4-73 (75)
3 2ect_A Ring finger protein 126 99.5 3E-14 1E-18 111.9 6.7 56 207-262 13-68 (78)
4 1iym_A EL5; ring-H2 finger, ub 99.5 2E-14 6.9E-19 105.4 4.8 50 208-257 4-54 (55)
5 2ep4_A Ring finger protein 24; 99.5 3.1E-14 1E-18 110.7 5.9 55 207-261 13-67 (74)
6 2kiz_A E3 ubiquitin-protein li 99.5 3.1E-14 1.1E-18 109.2 5.5 54 207-260 12-65 (69)
7 2ecm_A Ring finger and CHY zin 99.4 3.5E-13 1.2E-17 98.6 4.5 50 208-257 4-54 (55)
8 1v87_A Deltex protein 2; ring- 99.4 4.2E-13 1.5E-17 112.7 5.5 51 209-259 25-95 (114)
9 3dpl_R Ring-box protein 1; ubi 99.3 4.6E-13 1.6E-17 112.7 4.7 67 191-257 12-100 (106)
10 2ecl_A Ring-box protein 2; RNF 99.3 3.3E-13 1.1E-17 107.6 2.8 50 209-258 15-76 (81)
11 2ea6_A Ring finger protein 4; 99.3 7.9E-13 2.7E-17 100.7 4.2 52 207-258 13-68 (69)
12 3ng2_A RNF4, snurf, ring finge 99.3 7.5E-13 2.6E-17 101.6 3.7 53 208-260 9-65 (71)
13 2xeu_A Ring finger protein 4; 99.3 1.3E-12 4.4E-17 98.0 3.2 52 209-260 3-58 (64)
14 1chc_A Equine herpes virus-1 r 99.3 3.1E-12 1.1E-16 97.6 5.0 50 208-259 4-53 (68)
15 2d8t_A Dactylidin, ring finger 99.3 2.6E-12 8.8E-17 99.3 4.0 49 208-259 14-62 (71)
16 2d8s_A Cellular modulator of i 99.3 3.7E-12 1.3E-16 101.9 5.0 52 208-260 14-72 (80)
17 2djb_A Polycomb group ring fin 99.3 5.7E-12 1.9E-16 97.7 5.9 52 207-261 13-65 (72)
18 2ecn_A Ring finger protein 141 99.2 2.1E-12 7.1E-17 99.2 3.1 50 207-260 13-62 (70)
19 2ct2_A Tripartite motif protei 99.2 1E-11 3.4E-16 99.0 5.2 54 206-259 12-69 (88)
20 2yur_A Retinoblastoma-binding 99.2 2.4E-11 8E-16 94.8 6.0 51 207-260 13-66 (74)
21 2ysl_A Tripartite motif-contai 99.2 1.8E-11 6.3E-16 94.4 4.9 51 207-260 18-71 (73)
22 2ecy_A TNF receptor-associated 99.2 1.9E-11 6.4E-16 93.0 4.5 51 207-260 13-64 (66)
23 4a0k_B E3 ubiquitin-protein li 99.2 3.3E-12 1.1E-16 109.4 0.2 50 208-257 47-111 (117)
24 2csy_A Zinc finger protein 183 99.2 1.7E-11 5.8E-16 97.0 4.3 47 208-257 14-60 (81)
25 4ayc_A E3 ubiquitin-protein li 99.1 1.1E-11 3.7E-16 108.1 2.7 48 209-259 53-100 (138)
26 1t1h_A Gspef-atpub14, armadill 99.1 4.4E-11 1.5E-15 93.7 4.7 50 207-259 6-56 (78)
27 2ct0_A Non-SMC element 1 homol 99.1 6.6E-11 2.3E-15 93.4 5.5 51 208-260 14-66 (74)
28 2ecv_A Tripartite motif-contai 99.1 8.8E-11 3E-15 92.5 5.7 51 207-260 17-73 (85)
29 2egp_A Tripartite motif-contai 99.1 3E-11 1E-15 94.5 2.6 50 207-259 10-66 (79)
30 2ecw_A Tripartite motif-contai 99.1 6.5E-11 2.2E-15 93.3 4.5 50 207-259 17-72 (85)
31 3lrq_A E3 ubiquitin-protein li 99.1 1E-11 3.5E-16 102.6 -0.4 49 208-259 21-71 (100)
32 2ysj_A Tripartite motif-contai 99.1 1E-10 3.5E-15 87.9 4.6 43 207-252 18-63 (63)
33 4ap4_A E3 ubiquitin ligase RNF 99.1 5.9E-11 2E-15 100.9 3.5 53 208-260 6-62 (133)
34 2ckl_A Polycomb group ring fin 99.0 6.9E-11 2.4E-15 98.5 3.1 51 206-259 12-63 (108)
35 2y43_A E3 ubiquitin-protein li 99.0 6.3E-11 2.2E-15 97.1 2.2 47 209-258 22-69 (99)
36 2ecj_A Tripartite motif-contai 99.0 1.5E-10 5.1E-15 85.2 3.6 43 207-252 13-58 (58)
37 3ztg_A E3 ubiquitin-protein li 99.0 2.7E-10 9.1E-15 91.9 5.2 48 207-257 11-61 (92)
38 4ap4_A E3 ubiquitin ligase RNF 99.0 1.6E-10 5.3E-15 98.3 3.0 52 208-259 71-126 (133)
39 1g25_A CDK-activating kinase a 99.0 3.1E-10 1E-14 86.0 4.0 52 209-260 3-57 (65)
40 3fl2_A E3 ubiquitin-protein li 99.0 3.5E-10 1.2E-14 96.4 4.9 48 208-258 51-99 (124)
41 2ckl_B Ubiquitin ligase protei 99.0 2.1E-10 7.1E-15 102.6 2.9 49 207-258 52-102 (165)
42 1z6u_A NP95-like ring finger p 98.9 1.3E-10 4.6E-15 103.0 1.6 49 208-259 77-126 (150)
43 1jm7_A BRCA1, breast cancer ty 98.9 3.8E-10 1.3E-14 93.9 3.9 49 209-260 21-72 (112)
44 3l11_A E3 ubiquitin-protein li 98.9 2.1E-10 7.1E-15 96.5 1.6 48 208-258 14-62 (115)
45 3hct_A TNF receptor-associated 98.9 7.2E-10 2.5E-14 93.9 3.2 50 207-259 16-66 (118)
46 1bor_A Transcription factor PM 98.9 9.5E-10 3.2E-14 81.4 3.3 47 208-260 5-51 (56)
47 2y1n_A E3 ubiquitin-protein li 98.8 1.2E-09 4.3E-14 110.5 4.3 48 209-259 332-380 (389)
48 2kre_A Ubiquitin conjugation f 98.8 2.3E-09 7.9E-14 88.9 4.7 50 207-259 27-76 (100)
49 2kr4_A Ubiquitin conjugation f 98.8 1.9E-09 6.5E-14 86.7 4.0 50 207-259 12-61 (85)
50 1rmd_A RAG1; V(D)J recombinati 98.8 1.4E-09 4.8E-14 91.5 2.9 49 209-260 23-72 (116)
51 2vje_A E3 ubiquitin-protein li 98.8 2.4E-09 8.1E-14 81.6 3.8 47 208-257 7-56 (64)
52 1wgm_A Ubiquitin conjugation f 98.8 2.8E-09 9.6E-14 88.1 4.5 50 207-259 20-70 (98)
53 3knv_A TNF receptor-associated 98.8 6.8E-10 2.3E-14 97.6 0.5 51 206-259 28-79 (141)
54 1e4u_A Transcriptional repress 98.8 6.4E-09 2.2E-13 82.5 6.2 54 207-261 9-65 (78)
55 1jm7_B BARD1, BRCA1-associated 98.8 3.2E-09 1.1E-13 89.8 3.5 45 209-258 22-67 (117)
56 2vje_B MDM4 protein; proto-onc 98.7 5.2E-09 1.8E-13 79.4 3.8 47 208-257 6-55 (63)
57 4ic3_A E3 ubiquitin-protein li 98.7 1.4E-09 4.7E-14 85.0 -0.2 43 209-258 24-67 (74)
58 2c2l_A CHIP, carboxy terminus 98.6 2.8E-08 9.6E-13 94.4 4.5 49 208-259 207-256 (281)
59 2yu4_A E3 SUMO-protein ligase 98.6 1.7E-08 5.7E-13 82.4 2.5 48 208-258 6-63 (94)
60 3hcs_A TNF receptor-associated 98.5 2.9E-08 9.8E-13 88.9 3.1 50 207-259 16-66 (170)
61 1vyx_A ORF K3, K3RING; zinc-bi 98.5 5.4E-08 1.9E-12 73.5 3.7 48 208-258 5-59 (60)
62 3k1l_B Fancl; UBC, ring, RWD, 98.5 2.9E-08 1E-12 98.7 2.5 52 208-259 307-374 (381)
63 2ecg_A Baculoviral IAP repeat- 98.4 6.8E-08 2.3E-12 75.4 2.8 43 210-259 26-69 (75)
64 2ea5_A Cell growth regulator w 98.4 1.2E-07 4E-12 73.1 3.9 45 208-259 14-59 (68)
65 2f42_A STIP1 homology and U-bo 98.4 1.3E-07 4.4E-12 86.4 4.0 50 207-259 104-154 (179)
66 2yho_A E3 ubiquitin-protein li 98.3 9.9E-08 3.4E-12 75.6 1.0 44 209-259 18-62 (79)
67 1wim_A KIAA0161 protein; ring 98.2 2.8E-07 9.6E-12 74.7 1.9 47 209-255 5-61 (94)
68 2bay_A PRE-mRNA splicing facto 98.2 3E-07 1E-11 69.5 1.9 48 210-260 4-52 (61)
69 3t6p_A Baculoviral IAP repeat- 98.2 4.5E-07 1.5E-11 90.7 3.0 44 208-258 294-338 (345)
70 3htk_C E3 SUMO-protein ligase 98.0 1.6E-06 5.6E-11 83.4 3.0 50 207-259 179-233 (267)
71 3vk6_A E3 ubiquitin-protein li 97.8 8.6E-06 2.9E-10 67.3 3.1 47 211-259 3-50 (101)
72 3nw0_A Non-structural maintena 97.7 2E-05 6.9E-10 74.8 4.4 49 209-260 180-231 (238)
73 2ko5_A Ring finger protein Z; 96.0 0.0062 2.1E-07 49.6 4.4 53 209-266 28-81 (99)
74 2lri_C Autoimmune regulator; Z 94.1 0.052 1.8E-06 41.3 4.3 46 208-256 11-60 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 91.8 0.075 2.6E-06 42.8 2.3 33 209-241 3-35 (101)
76 2l5u_A Chromodomain-helicase-D 88.5 0.2 6.8E-06 37.2 2.0 46 207-255 9-58 (61)
77 1mm2_A MI2-beta; PHD, zinc fin 88.0 0.31 1.1E-05 36.2 2.8 46 208-256 8-57 (61)
78 1wil_A KIAA1045 protein; ring 87.4 0.5 1.7E-05 37.7 3.7 32 207-242 13-47 (89)
79 1we9_A PHD finger family prote 87.2 0.17 5.8E-06 37.7 0.9 47 208-254 5-57 (64)
80 2kdx_A HYPA, hydrogenase/ureas 86.7 0.36 1.2E-05 40.5 2.8 34 7-42 71-105 (119)
81 1f62_A Transcription factor WS 86.3 0.38 1.3E-05 34.1 2.4 44 211-254 2-49 (51)
82 2yql_A PHD finger protein 21A; 86.1 0.16 5.6E-06 36.9 0.3 45 207-254 7-55 (56)
83 3o36_A Transcription intermedi 85.8 0.32 1.1E-05 43.6 2.2 46 208-256 3-52 (184)
84 1xwh_A Autoimmune regulator; P 85.6 0.32 1.1E-05 36.6 1.8 45 208-255 7-55 (66)
85 1fp0_A KAP-1 corepressor; PHD 85.2 0.86 2.9E-05 36.6 4.2 46 207-255 23-72 (88)
86 2k16_A Transcription initiatio 84.8 0.31 1.1E-05 37.4 1.3 50 208-258 17-71 (75)
87 3lqh_A Histone-lysine N-methyl 83.2 0.65 2.2E-05 42.1 3.0 47 210-256 3-64 (183)
88 2ysm_A Myeloid/lymphoid or mix 82.4 0.76 2.6E-05 37.8 2.9 46 208-253 6-55 (111)
89 2yt5_A Metal-response element- 82.3 0.36 1.2E-05 36.0 0.8 50 207-256 4-62 (66)
90 3u5n_A E3 ubiquitin-protein li 81.2 0.44 1.5E-05 43.6 1.1 45 208-256 6-55 (207)
91 2puy_A PHD finger protein 21A; 80.1 0.47 1.6E-05 34.9 0.8 46 208-256 4-53 (60)
92 2ct7_A Ring finger protein 31; 80.0 1 3.5E-05 35.5 2.8 36 6-41 22-57 (86)
93 2ro1_A Transcription intermedi 78.5 0.85 2.9E-05 41.3 2.1 44 209-255 2-49 (189)
94 3v43_A Histone acetyltransfera 78.3 1.2 4.1E-05 36.8 2.8 44 211-254 63-111 (112)
95 1wev_A Riken cDNA 1110020M19; 78.1 0.51 1.7E-05 37.6 0.4 49 209-257 16-74 (88)
96 3a43_A HYPD, hydrogenase nicke 76.0 1.3 4.6E-05 38.2 2.5 33 7-39 68-119 (139)
97 2lv9_A Histone-lysine N-methyl 75.9 1.4 4.8E-05 35.7 2.4 44 210-254 29-75 (98)
98 2e6r_A Jumonji/ARID domain-con 74.1 0.71 2.4E-05 37.1 0.2 46 209-255 16-66 (92)
99 3m62_A Ubiquitin conjugation f 73.4 2.3 7.8E-05 47.5 4.1 49 208-259 890-939 (968)
100 2kgg_A Histone demethylase jar 72.6 2.1 7.1E-05 30.5 2.4 43 211-253 4-52 (52)
101 3v43_A Histone acetyltransfera 72.1 2.9 0.0001 34.4 3.6 46 208-253 4-62 (112)
102 1wep_A PHF8; structural genomi 71.9 2.4 8.3E-05 32.7 2.8 46 210-256 13-64 (79)
103 3h0g_L DNA-directed RNA polyme 70.9 2.5 8.5E-05 31.9 2.6 34 7-41 19-52 (63)
104 3shb_A E3 ubiquitin-protein li 69.6 1.2 4.1E-05 34.7 0.6 25 230-254 47-76 (77)
105 4ayb_P DNA-directed RNA polyme 67.7 3.8 0.00013 29.1 2.7 36 8-43 2-39 (48)
106 1weu_A Inhibitor of growth fam 67.4 5.8 0.0002 31.9 4.2 44 209-256 36-86 (91)
107 2e6s_A E3 ubiquitin-protein li 67.1 2 6.9E-05 33.4 1.4 44 210-254 27-76 (77)
108 1wen_A Inhibitor of growth fam 65.6 4.6 0.00016 30.8 3.2 44 209-256 16-66 (71)
109 1twf_L ABC10-alpha, DNA-direct 64.9 4.3 0.00015 31.1 2.9 33 6-39 25-57 (70)
110 2vpb_A Hpygo1, pygopus homolog 64.7 3.4 0.00012 31.0 2.2 34 208-241 7-42 (65)
111 1wee_A PHD finger family prote 64.6 1.5 5.2E-05 33.3 0.3 45 210-255 17-66 (72)
112 1pft_A TFIIB, PFTFIIBN; N-term 64.2 4 0.00014 28.6 2.4 36 8-43 4-40 (50)
113 2lbm_A Transcriptional regulat 62.5 5.8 0.0002 34.5 3.6 45 207-254 61-116 (142)
114 2ku3_A Bromodomain-containing 62.3 3 0.0001 31.9 1.6 48 207-254 14-65 (71)
115 1weo_A Cellulose synthase, cat 59.8 43 0.0015 26.9 7.8 51 209-259 16-71 (93)
116 2l43_A N-teminal domain from h 59.7 1.9 6.6E-05 34.3 0.1 51 207-257 23-77 (88)
117 3asl_A E3 ubiquitin-protein li 59.7 2.8 9.5E-05 31.9 0.9 25 230-254 39-68 (70)
118 2ri7_A Nucleosome-remodeling f 59.1 1.9 6.5E-05 37.9 -0.1 47 208-255 7-59 (174)
119 2xb1_A Pygopus homolog 2, B-ce 59.0 5.2 0.00018 32.8 2.6 47 210-256 4-62 (105)
120 3ask_A E3 ubiquitin-protein li 59.0 3.3 0.00011 38.8 1.5 45 210-254 175-224 (226)
121 2con_A RUH-035 protein, NIN on 58.6 5.7 0.0002 31.2 2.6 31 10-43 16-46 (79)
122 2kwj_A Zinc finger protein DPF 58.3 4.6 0.00016 33.4 2.2 44 210-253 2-59 (114)
123 3ql9_A Transcriptional regulat 58.1 8.4 0.00029 32.9 3.8 44 207-254 55-110 (129)
124 2cu8_A Cysteine-rich protein 2 57.9 5.3 0.00018 29.8 2.3 41 209-259 9-49 (76)
125 1wem_A Death associated transc 57.4 2.6 8.9E-05 32.2 0.4 45 210-255 17-70 (76)
126 2a20_A Regulating synaptic mem 55.4 1.4 4.8E-05 32.8 -1.3 49 206-254 6-59 (62)
127 4fo9_A E3 SUMO-protein ligase 55.0 6.7 0.00023 39.1 3.1 49 209-259 215-267 (360)
128 1y02_A CARP2, FYVE-ring finger 54.5 2.1 7.1E-05 36.2 -0.6 47 210-256 20-67 (120)
129 1iml_A CRIP, cysteine rich int 54.1 4.9 0.00017 30.1 1.5 38 211-258 2-39 (76)
130 3i2d_A E3 SUMO-protein ligase 53.9 8.2 0.00028 38.6 3.5 48 210-259 250-301 (371)
131 2dj7_A Actin-binding LIM prote 53.9 9.2 0.00031 29.1 3.1 39 209-257 15-53 (80)
132 2co8_A NEDD9 interacting prote 53.5 10 0.00035 28.9 3.3 41 209-259 15-55 (82)
133 1wew_A DNA-binding family prot 52.8 3.7 0.00013 31.6 0.6 46 209-255 16-72 (78)
134 2ysm_A Myeloid/lymphoid or mix 52.0 2.4 8.3E-05 34.6 -0.6 44 211-255 56-104 (111)
135 1x64_A Alpha-actinin-2 associa 50.1 17 0.00057 27.9 4.1 40 209-259 25-64 (89)
136 4gne_A Histone-lysine N-methyl 49.2 13 0.00045 30.6 3.5 47 207-259 13-66 (107)
137 3o70_A PHD finger protein 13; 48.8 3.9 0.00014 30.9 0.2 44 209-254 19-66 (68)
138 3t7l_A Zinc finger FYVE domain 46.6 13 0.00045 29.3 3.0 47 210-256 21-74 (90)
139 1x4l_A Skeletal muscle LIM-pro 46.6 16 0.00056 26.6 3.4 41 210-258 6-47 (72)
140 2cs3_A Protein C14ORF4, MY039 46.5 11 0.00038 29.8 2.4 37 209-246 15-53 (93)
141 1vfy_A Phosphatidylinositol-3- 46.3 13 0.00046 28.1 2.9 33 210-242 12-45 (73)
142 1joc_A EEA1, early endosomal a 45.8 12 0.00041 31.5 2.8 33 210-242 70-103 (125)
143 1z2q_A LM5-1; membrane protein 45.6 14 0.00049 28.7 3.0 48 209-256 21-77 (84)
144 2rsd_A E3 SUMO-protein ligase 44.8 3.1 0.00011 31.2 -0.9 43 210-254 11-64 (68)
145 1vd4_A Transcription initiatio 44.5 14 0.00048 26.0 2.6 37 6-42 11-54 (62)
146 1dvp_A HRS, hepatocyte growth 44.5 12 0.0004 34.3 2.7 35 209-243 161-196 (220)
147 3c6w_A P28ING5, inhibitor of g 44.4 4 0.00014 29.9 -0.4 42 209-254 9-57 (59)
148 1x61_A Thyroid receptor intera 43.6 19 0.00065 26.2 3.3 39 210-257 6-44 (72)
149 1a7i_A QCRP2 (LIM1); LIM domai 43.1 11 0.00038 28.3 2.0 40 210-259 8-47 (81)
150 1x68_A FHL5 protein; four-and- 43.0 17 0.00059 26.9 3.1 40 210-257 6-46 (76)
151 2kwj_A Zinc finger protein DPF 42.8 4.5 0.00015 33.4 -0.4 46 211-256 60-109 (114)
152 2yw8_A RUN and FYVE domain-con 42.7 16 0.00053 28.3 2.8 34 210-243 20-54 (82)
153 1wfk_A Zinc finger, FYVE domai 42.5 16 0.00054 28.8 2.9 51 209-259 9-67 (88)
154 2vnf_A ING 4, P29ING4, inhibit 42.4 4.3 0.00015 29.8 -0.5 42 209-254 10-58 (60)
155 1zbd_B Rabphilin-3A; G protein 42.0 13 0.00043 31.9 2.4 47 208-254 54-106 (134)
156 1x63_A Skeletal muscle LIM-pro 41.2 19 0.00064 27.0 3.0 41 210-259 16-56 (82)
157 1x4u_A Zinc finger, FYVE domai 40.7 17 0.00057 28.2 2.7 32 210-241 15-47 (84)
158 2dar_A PDZ and LIM domain prot 40.5 20 0.00067 27.6 3.1 39 209-258 25-63 (90)
159 3zyq_A Hepatocyte growth facto 40.4 14 0.00049 34.0 2.6 49 209-257 164-221 (226)
160 1x4k_A Skeletal muscle LIM-pro 39.9 19 0.00065 26.2 2.8 41 210-259 6-46 (72)
161 1wyh_A SLIM 2, skeletal muscle 39.5 17 0.00058 26.4 2.5 40 210-258 6-45 (72)
162 1z60_A TFIIH basal transcripti 37.1 12 0.00041 27.7 1.2 42 210-252 16-58 (59)
163 2gmg_A Hypothetical protein PF 37.0 18 0.00061 29.9 2.4 32 8-40 66-97 (105)
164 3mpx_A FYVE, rhogef and PH dom 36.8 7.3 0.00025 38.7 0.0 48 209-256 375-430 (434)
165 1g47_A Pinch protein; LIM doma 36.4 31 0.0011 25.3 3.6 42 209-259 11-52 (77)
166 1x62_A C-terminal LIM domain p 36.0 28 0.00095 26.0 3.2 38 209-257 15-52 (79)
167 2zet_C Melanophilin; complex, 35.6 21 0.00072 31.2 2.8 46 208-254 67-116 (153)
168 2l3k_A Rhombotin-2, linker, LI 35.5 17 0.00059 29.8 2.2 38 211-257 10-47 (123)
169 3kv5_D JMJC domain-containing 35.0 11 0.00037 39.0 0.9 45 210-255 38-88 (488)
170 2cor_A Pinch protein; LIM doma 34.0 31 0.0011 25.9 3.3 40 209-259 15-54 (79)
171 2d8z_A Four and A half LIM dom 32.8 33 0.0011 24.7 3.2 38 210-258 6-43 (70)
172 2lv2_A Insulinoma-associated p 32.1 29 0.00099 26.7 2.8 38 3-40 22-69 (85)
173 2ida_A Hypothetical protein; z 31.9 16 0.00055 29.9 1.3 19 2-20 68-86 (102)
174 2d8x_A Protein pinch; LIM doma 31.9 30 0.001 25.0 2.8 39 210-259 6-44 (70)
175 1wg2_A Zinc finger (AN1-like) 31.8 23 0.00078 26.7 2.0 29 8-41 14-42 (64)
176 2d8y_A Eplin protein; LIM doma 30.7 27 0.00091 26.9 2.4 41 209-259 15-55 (91)
177 3f6q_B LIM and senescent cell 30.6 23 0.00079 25.5 1.9 42 209-259 11-52 (72)
178 1nyp_A Pinch protein; LIM doma 30.5 28 0.00096 24.8 2.4 38 210-258 6-43 (66)
179 3o7a_A PHD finger protein 13 v 30.2 10 0.00034 26.8 -0.2 40 214-254 8-51 (52)
180 1wfh_A Zinc finger (AN1-like) 29.8 27 0.00093 26.3 2.1 31 6-41 12-42 (64)
181 2l4z_A DNA endonuclease RBBP8, 29.8 26 0.00088 29.0 2.3 38 210-257 62-99 (123)
182 1zfo_A LAsp-1; LIM domain, zin 29.3 19 0.00065 22.7 1.1 28 210-239 4-31 (31)
183 1wd2_A Ariadne-1 protein homol 28.9 27 0.00091 25.6 1.9 36 210-245 7-47 (60)
184 2cur_A Skeletal muscle LIM-pro 28.8 37 0.0013 24.4 2.8 38 210-258 6-43 (69)
185 2cuq_A Four and A half LIM dom 28.5 42 0.0014 24.8 3.1 38 210-258 16-53 (80)
186 2eps_A POZ-, at HOOK-, and zin 28.1 52 0.0018 22.0 3.3 34 5-38 8-52 (54)
187 1x5w_A Zinc finger protein 64, 27.9 33 0.0011 24.1 2.3 38 3-40 3-50 (70)
188 2js4_A UPF0434 protein BB2007; 27.9 18 0.0006 27.6 0.8 26 12-37 11-36 (70)
189 2hf1_A Tetraacyldisaccharide-1 27.6 17 0.00057 27.6 0.7 26 12-37 11-36 (68)
190 2jne_A Hypothetical protein YF 27.3 31 0.0011 28.1 2.2 29 11-41 34-62 (101)
191 1ryq_A DNA-directed RNA polyme 27.2 26 0.00089 26.7 1.6 20 11-36 13-32 (69)
192 3qt1_I DNA-directed RNA polyme 27.1 32 0.0011 29.3 2.4 35 7-43 22-60 (133)
193 2pk7_A Uncharacterized protein 26.7 18 0.0006 27.5 0.6 26 12-37 11-36 (69)
194 2o35_A Hypothetical protein DU 26.5 20 0.00067 29.4 0.9 13 233-245 42-54 (105)
195 2jr6_A UPF0434 protein NMA0874 26.5 18 0.00062 27.4 0.7 26 12-37 11-36 (68)
196 1x6a_A LIMK-2, LIM domain kina 26.4 31 0.0011 25.7 2.1 38 210-258 16-53 (81)
197 3fyb_A Protein of unknown func 26.3 20 0.00068 29.3 0.9 13 233-245 41-53 (104)
198 1v6g_A Actin binding LIM prote 26.2 44 0.0015 24.9 2.9 38 210-258 16-53 (81)
199 1vq8_Z 50S ribosomal protein L 26.1 23 0.00079 27.8 1.2 32 8-39 26-57 (83)
200 2jvx_A NF-kappa-B essential mo 25.6 17 0.00058 22.9 0.3 13 247-259 4-16 (28)
201 1m3v_A FLIN4, fusion of the LI 25.2 40 0.0014 27.5 2.6 37 210-256 6-42 (122)
202 1dx8_A Rubredoxin; electron tr 25.0 50 0.0017 25.0 2.9 33 3-35 1-48 (70)
203 2m0e_A Zinc finger and BTB dom 24.6 27 0.00092 19.2 1.1 12 28-39 3-14 (29)
204 1x4w_A Hypothetical protein FL 24.4 14 0.00048 28.1 -0.3 32 8-41 14-45 (67)
205 2jmi_A Protein YNG1, ING1 homo 24.2 20 0.00069 28.6 0.6 41 209-254 26-75 (90)
206 3kqi_A GRC5, PHD finger protei 24.1 25 0.00086 26.6 1.1 46 210-255 10-61 (75)
207 2jrp_A Putative cytoplasmic pr 24.1 35 0.0012 26.8 1.9 23 9-36 18-40 (81)
208 2egq_A FHL1 protein; LIM domai 24.1 53 0.0018 24.1 2.9 41 210-258 16-58 (77)
209 2dlo_A Thyroid receptor-intera 23.8 49 0.0017 24.6 2.7 39 209-258 15-53 (81)
210 1wfp_A Zinc finger (AN1-like) 23.8 38 0.0013 26.2 2.0 30 7-41 23-52 (74)
211 2jmo_A Parkin; IBR, E3 ligase, 23.5 38 0.0013 26.0 2.0 31 9-39 25-62 (80)
212 4gzn_C ZFP-57, zinc finger pro 23.5 36 0.0012 24.3 1.8 34 7-40 2-45 (60)
213 2cup_A Skeletal muscle LIM-pro 23.2 53 0.0018 25.4 2.9 10 211-220 7-16 (101)
214 3a1b_A DNA (cytosine-5)-methyl 23.2 39 0.0013 29.8 2.2 42 208-253 78-132 (159)
215 2jz8_A Uncharacterized protein 22.9 28 0.00097 27.7 1.2 18 24-41 45-62 (87)
216 1yuz_A Nigerythrin; rubrythrin 22.7 22 0.00077 32.2 0.7 19 230-255 177-195 (202)
217 1wig_A KIAA1808 protein; LIM d 22.7 44 0.0015 24.6 2.2 37 210-257 6-42 (73)
218 2d8v_A Zinc finger FYVE domain 22.7 54 0.0019 24.8 2.6 31 208-242 7-38 (67)
219 2ehe_A Four and A half LIM dom 22.6 53 0.0018 24.4 2.7 40 210-258 16-55 (82)
220 3h0g_I DNA-directed RNA polyme 22.5 51 0.0017 27.0 2.8 33 9-43 4-40 (113)
221 2g6q_A Inhibitor of growth pro 22.5 15 0.00052 27.1 -0.4 42 209-254 11-59 (62)
222 2k2d_A Ring finger and CHY zin 22.3 45 0.0015 25.8 2.2 32 9-42 37-70 (79)
223 2dmd_A Zinc finger protein 64, 21.7 50 0.0017 24.4 2.4 38 3-40 2-49 (96)
224 1x3h_A Leupaxin; paxillin fami 21.7 60 0.002 23.9 2.8 39 210-259 16-54 (80)
225 6rxn_A Rubredoxin; electron tr 21.6 33 0.0011 24.0 1.2 16 240-255 22-39 (46)
226 1ard_A Yeast transcription fac 21.3 31 0.0011 19.1 0.9 13 28-40 3-15 (29)
227 2fiy_A Protein FDHE homolog; F 21.0 29 0.00098 33.7 1.0 48 207-255 180-231 (309)
228 1b8t_A Protein (CRP1); LIM dom 20.7 47 0.0016 29.2 2.4 40 209-258 115-154 (192)
229 2jny_A Uncharacterized BCR; st 20.6 27 0.00094 26.3 0.7 26 12-37 13-38 (67)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.67 E-value=6.1e-17 Score=131.95 Aligned_cols=77 Identities=39% Similarity=0.867 Sum_probs=68.4
Q ss_pred CCCCCCCCHHHHHcCCceeecccC--cccCccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCC
Q 039088 182 GFENPPASKAAIENMPSILIDSSY--VELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 182 ~~~~ppas~~~i~~lp~~~~~~~~--~~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
.....+++++.|+.||.+++.... ...+..|+||++.|..++.++.|||+|.||..||.+||+.+.+||+||+.+..
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 456888999999999999887654 33457899999999988889999999999999999999999999999998865
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.1e-16 Score=122.73 Aligned_cols=69 Identities=28% Similarity=0.690 Sum_probs=59.1
Q ss_pred HHHHcCCceeecccCc-ccCccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 191 AAIENMPSILIDSSYV-ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 191 ~~i~~lp~~~~~~~~~-~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
+.|+.||..++..... ..+..|+||++.|..++.++.|||+|.||..||.+||+.+.+||+||+++...
T Consensus 4 ~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4567788888876543 34578999999999888889999999999999999999999999999988654
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.49 E-value=3e-14 Score=111.93 Aligned_cols=56 Identities=45% Similarity=1.136 Sum_probs=50.1
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADNNS 262 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~~ 262 (409)
..+..|+||++.|.....++.|+|+|.||..||.+||+.+.+||+||+.+......
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 44579999999999888888999999999999999999999999999999776543
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.48 E-value=2e-14 Score=105.39 Aligned_cols=50 Identities=40% Similarity=0.909 Sum_probs=46.3
Q ss_pred cCccccccccccccCCCceeec-ccceeChhhhHHHhhcCCCCCCCCccCC
Q 039088 208 LESHCAVCKEAFELGSEAREMP-CKHIYHSDCILPWLSLRNSCPVCRHELP 257 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lP-C~H~FH~~CI~~WL~~~~sCPvCR~~l~ 257 (409)
.+.+|+||++.|..++.+..++ |+|.||..||.+|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4578999999999988899998 9999999999999999999999999874
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.1e-14 Score=110.74 Aligned_cols=55 Identities=36% Similarity=0.869 Sum_probs=49.1
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADNN 261 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~ 261 (409)
..+..|+||++.|.....+..|+|+|.||..||.+||+.+.+||+||+.+.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 3457899999999988888899999999999999999999999999999866543
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=3.1e-14 Score=109.23 Aligned_cols=54 Identities=33% Similarity=0.946 Sum_probs=48.8
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADN 260 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~ 260 (409)
..+..|+||++.|..+..++.++|+|.||..||.+|++.+.+||+||+.|....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 345789999999998888999999999999999999999999999999987654
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.36 E-value=3.5e-13 Score=98.57 Aligned_cols=50 Identities=28% Similarity=0.614 Sum_probs=43.7
Q ss_pred cCccccccccccccC-CCceeecccceeChhhhHHHhhcCCCCCCCCccCC
Q 039088 208 LESHCAVCKEAFELG-SEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELP 257 (409)
Q Consensus 208 ~~~~C~ICle~f~~g-~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 257 (409)
.+..|+||++.|..+ ..++.++|+|.||..||.+|++.+.+||+||+.|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 357899999999654 35778889999999999999999999999999875
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.36 E-value=4.2e-13 Score=112.70 Aligned_cols=51 Identities=27% Similarity=0.639 Sum_probs=42.0
Q ss_pred CccccccccccccCC---------------CceeecccceeChhhhHHHh-----hcCCCCCCCCccCCCC
Q 039088 209 ESHCAVCKEAFELGS---------------EAREMPCKHIYHSDCILPWL-----SLRNSCPVCRHELPAD 259 (409)
Q Consensus 209 ~~~C~ICle~f~~g~---------------~~~~lPC~H~FH~~CI~~WL-----~~~~sCPvCR~~l~~~ 259 (409)
+..|+||++.|.... .++.++|+|.||..||..|| +.+.+||+||+.+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 468999999997643 33478899999999999999 4567999999988654
No 9
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.35 E-value=4.6e-13 Score=112.66 Aligned_cols=67 Identities=21% Similarity=0.417 Sum_probs=48.0
Q ss_pred HHHHcCCceeecccCc-------ccCccccccccccccCC---------------CceeecccceeChhhhHHHhhcCCC
Q 039088 191 AAIENMPSILIDSSYV-------ELESHCAVCKEAFELGS---------------EAREMPCKHIYHSDCILPWLSLRNS 248 (409)
Q Consensus 191 ~~i~~lp~~~~~~~~~-------~~~~~C~ICle~f~~g~---------------~~~~lPC~H~FH~~CI~~WL~~~~s 248 (409)
......+.+++++-+. ..++.|+||++.|.... .++.++|+|.||..||.+||+.+.+
T Consensus 12 ~~~~~~~r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~ 91 (106)
T 3dpl_R 12 NSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV 91 (106)
T ss_dssp -----CCSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSB
T ss_pred ccccccCceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCc
Confidence 3444555555544221 24578999999998541 2566889999999999999999999
Q ss_pred CCCCCccCC
Q 039088 249 CPVCRHELP 257 (409)
Q Consensus 249 CPvCR~~l~ 257 (409)
||+||+++.
T Consensus 92 CP~Cr~~~~ 100 (106)
T 3dpl_R 92 CPLDNREWE 100 (106)
T ss_dssp CSSSCSBCC
T ss_pred CcCCCCcce
Confidence 999999863
No 10
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=3.3e-13 Score=107.63 Aligned_cols=50 Identities=24% Similarity=0.663 Sum_probs=41.5
Q ss_pred Ccccccccccccc-----------CCCceeec-ccceeChhhhHHHhhcCCCCCCCCccCCC
Q 039088 209 ESHCAVCKEAFEL-----------GSEAREMP-CKHIYHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 209 ~~~C~ICle~f~~-----------g~~~~~lP-C~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
+..|+||++.|.. ++.++.++ |+|.||..||.+||+.+++||+||+++..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 4668888887753 45566776 99999999999999999999999998754
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=7.9e-13 Score=100.66 Aligned_cols=52 Identities=23% Similarity=0.593 Sum_probs=44.4
Q ss_pred ccCccccccccccccC----CCceeecccceeChhhhHHHhhcCCCCCCCCccCCC
Q 039088 207 ELESHCAVCKEAFELG----SEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g----~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
..+..|+||++.|... ..++.++|+|.||..||..||+.+.+||+||+.|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3457899999998753 334788999999999999999999999999998854
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.31 E-value=7.5e-13 Score=101.61 Aligned_cols=53 Identities=23% Similarity=0.586 Sum_probs=45.7
Q ss_pred cCccccccccccccC----CCceeecccceeChhhhHHHhhcCCCCCCCCccCCCCC
Q 039088 208 LESHCAVCKEAFELG----SEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADN 260 (409)
Q Consensus 208 ~~~~C~ICle~f~~g----~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~ 260 (409)
.+..|+||++.|... ..++.++|+|.||..||.+|++.+.+||+||+.+...+
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 457899999998752 45578899999999999999999999999999987554
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.28 E-value=1.3e-12 Score=98.01 Aligned_cols=52 Identities=23% Similarity=0.613 Sum_probs=44.9
Q ss_pred CccccccccccccC----CCceeecccceeChhhhHHHhhcCCCCCCCCccCCCCC
Q 039088 209 ESHCAVCKEAFELG----SEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADN 260 (409)
Q Consensus 209 ~~~C~ICle~f~~g----~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~ 260 (409)
+..|+||++.+... +.+..++|+|.||..||.+|++.+.+||+||+.+...+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 46899999998753 44578899999999999999999999999999987653
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.27 E-value=3.1e-12 Score=97.57 Aligned_cols=50 Identities=24% Similarity=0.705 Sum_probs=43.5
Q ss_pred cCccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 208 LESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
.+..|+||++.+.. .++.++|+|.||..||..|++.+.+||+||+.+...
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 35789999999873 458899999999999999999999999999988643
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.6e-12 Score=99.32 Aligned_cols=49 Identities=31% Similarity=0.747 Sum_probs=43.5
Q ss_pred cCccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 208 LESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
.+..|+||++.+. ..+.++|+|.||..||..|++.+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 14 TVPECAICLQTCV---HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SCCBCSSSSSBCS---SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCccCCcccC---CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 4578999999886 568889999999999999999999999999998654
No 16
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.7e-12 Score=101.88 Aligned_cols=52 Identities=23% Similarity=0.656 Sum_probs=44.3
Q ss_pred cCccccccccccccCCCceeeccc-----ceeChhhhHHHhhcCC--CCCCCCccCCCCC
Q 039088 208 LESHCAVCKEAFELGSEAREMPCK-----HIYHSDCILPWLSLRN--SCPVCRHELPADN 260 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~-----H~FH~~CI~~WL~~~~--sCPvCR~~l~~~~ 260 (409)
.+..|.||+++|+.++.+ ++||+ |.||..||.+||..++ +||+||+.+....
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 457899999999876654 68997 9999999999998764 9999999987654
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=5.7e-12 Score=97.65 Aligned_cols=52 Identities=23% Similarity=0.524 Sum_probs=44.3
Q ss_pred ccCccccccccccccCCCceee-cccceeChhhhHHHhhcCCCCCCCCccCCCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLSLRNSCPVCRHELPADNN 261 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~ 261 (409)
..+..|+||++.|.. ++.+ +|+|.||..||..|++.+.+||+||+.+...+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 13 TPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 345789999999873 4555 899999999999999999999999999876644
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2.1e-12 Score=99.23 Aligned_cols=50 Identities=28% Similarity=0.765 Sum_probs=44.2
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADN 260 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~ 260 (409)
..+..|+||++.+.. +.++|+|.||..||.+|++.+.+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 345789999999874 88999999999999999999999999999987654
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1e-11 Score=99.03 Aligned_cols=54 Identities=20% Similarity=0.486 Sum_probs=46.0
Q ss_pred cccCccccccccccccCCC-ceeecccceeChhhhHHHhhcC---CCCCCCCccCCCC
Q 039088 206 VELESHCAVCKEAFELGSE-AREMPCKHIYHSDCILPWLSLR---NSCPVCRHELPAD 259 (409)
Q Consensus 206 ~~~~~~C~ICle~f~~g~~-~~~lPC~H~FH~~CI~~WL~~~---~sCPvCR~~l~~~ 259 (409)
......|+||++.|...+. ++.++|+|.||..||..|++.+ .+||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3445789999999986654 7888999999999999999886 6999999987654
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.18 E-value=2.4e-11 Score=94.82 Aligned_cols=51 Identities=27% Similarity=0.647 Sum_probs=43.0
Q ss_pred ccCccccccccccccCCCceeec-ccceeChhhhHHHhhcC--CCCCCCCccCCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMP-CKHIYHSDCILPWLSLR--NSCPVCRHELPADN 260 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lP-C~H~FH~~CI~~WL~~~--~sCPvCR~~l~~~~ 260 (409)
..+..|+||++.|. .++.++ |+|.||..||..|++.+ .+||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCCT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHHh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 34578999999987 567799 99999999999999876 69999999765443
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.8e-11 Score=94.42 Aligned_cols=51 Identities=20% Similarity=0.530 Sum_probs=43.0
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhh---cCCCCCCCCccCCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLS---LRNSCPVCRHELPADN 260 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~---~~~sCPvCR~~l~~~~ 260 (409)
..+..|+||++.|. .++.++|+|.||..||..|++ .+..||+||+.+...+
T Consensus 18 ~~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCcccC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 34578999999887 577789999999999999997 3558999999986553
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.9e-11 Score=92.99 Aligned_cols=51 Identities=22% Similarity=0.569 Sum_probs=42.3
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhh-cCCCCCCCCccCCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLS-LRNSCPVCRHELPADN 260 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~-~~~sCPvCR~~l~~~~ 260 (409)
..+..|+||++.+. .++.++|+|.||..||..|++ .+.+||+||+.+..++
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEES---SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhc---CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 34578999999987 445589999999999999995 5669999999986653
No 23
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.16 E-value=3.3e-12 Score=109.37 Aligned_cols=50 Identities=28% Similarity=0.631 Sum_probs=0.9
Q ss_pred cCccccccccccccC-------------C--CceeecccceeChhhhHHHhhcCCCCCCCCccCC
Q 039088 208 LESHCAVCKEAFELG-------------S--EAREMPCKHIYHSDCILPWLSLRNSCPVCRHELP 257 (409)
Q Consensus 208 ~~~~C~ICle~f~~g-------------~--~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 257 (409)
.++.|+||++.|+.. + .+..++|+|.||..||.+||+.+++||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 357899999999752 1 2334589999999999999999999999999864
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.7e-11 Score=96.95 Aligned_cols=47 Identities=21% Similarity=0.658 Sum_probs=42.3
Q ss_pred cCccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCC
Q 039088 208 LESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELP 257 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 257 (409)
....|+||++.|. .++.++|+|.||..||..|++...+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQ---NPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCC---SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhc---CeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4578999999986 4677999999999999999999999999999985
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.14 E-value=1.1e-11 Score=108.10 Aligned_cols=48 Identities=35% Similarity=0.906 Sum_probs=43.0
Q ss_pred CccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
+..|+||++.|. .++.+||+|.||..||..|+..+.+||+||+.+...
T Consensus 53 ~~~C~iC~~~~~---~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCS---SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccC---CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 467999999987 578899999999999999999999999999988543
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.11 E-value=4.4e-11 Score=93.68 Aligned_cols=50 Identities=18% Similarity=0.401 Sum_probs=43.6
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhhc-CCCCCCCCccCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSL-RNSCPVCRHELPAD 259 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~ 259 (409)
..+..|+||++.|. .++.++|+|.||..||..||+. +.+||+||..+...
T Consensus 6 ~~~~~C~IC~~~~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCcccccc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 34579999999887 5778899999999999999987 77999999988654
No 27
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=6.6e-11 Score=93.37 Aligned_cols=51 Identities=20% Similarity=0.508 Sum_probs=42.4
Q ss_pred cCccccccccccccCCCceeecccceeChhhhHHHhhcC--CCCCCCCccCCCCC
Q 039088 208 LESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLR--NSCPVCRHELPADN 260 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~--~sCPvCR~~l~~~~ 260 (409)
....|+||++.+..++. ...|+|.||..||.+||+.+ .+||+||+++....
T Consensus 14 ~i~~C~IC~~~i~~g~~--C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSSSEE--CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcccCCc--cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 34789999999986442 22699999999999999988 79999999887554
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=8.8e-11 Score=92.49 Aligned_cols=51 Identities=27% Similarity=0.669 Sum_probs=43.5
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhhc------CCCCCCCCccCCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSL------RNSCPVCRHELPADN 260 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~------~~sCPvCR~~l~~~~ 260 (409)
..+..|+||++.|. .++.++|+|.||..||..|++. ...||+||..+...+
T Consensus 17 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 17 KEEVTCPICLELLT---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCTTTCSCCS---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred cCCCCCCCCCcccC---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 34578999999987 4667899999999999999987 779999999987643
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.08 E-value=3e-11 Score=94.51 Aligned_cols=50 Identities=28% Similarity=0.584 Sum_probs=42.7
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhhc-------CCCCCCCCccCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSL-------RNSCPVCRHELPAD 259 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~-------~~sCPvCR~~l~~~ 259 (409)
..+..|+||++.|. .++.++|+|.||..||..|++. ...||+||..+...
T Consensus 10 ~~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLT---EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECS---SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccC---CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 34578999999987 4567899999999999999987 56899999988654
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.08 E-value=6.5e-11 Score=93.27 Aligned_cols=50 Identities=30% Similarity=0.688 Sum_probs=43.0
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhhc------CCCCCCCCccCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSL------RNSCPVCRHELPAD 259 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~------~~sCPvCR~~l~~~ 259 (409)
..+..|+||++.|. ..+.++|+|.||..||..|++. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 34578999999987 4568899999999999999987 66999999998654
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.08 E-value=1e-11 Score=102.61 Aligned_cols=49 Identities=31% Similarity=0.684 Sum_probs=42.6
Q ss_pred cCccccccccccccCCCcee-ecccceeChhhhHHHhhcC-CCCCCCCccCCCC
Q 039088 208 LESHCAVCKEAFELGSEARE-MPCKHIYHSDCILPWLSLR-NSCPVCRHELPAD 259 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~-lPC~H~FH~~CI~~WL~~~-~sCPvCR~~l~~~ 259 (409)
.+..|+||++.|. .++. ++|+|.||..||..|++.+ .+||+||..+...
T Consensus 21 ~~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 21 EVFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 4578999999987 4566 8999999999999999988 6999999998544
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1e-10 Score=87.94 Aligned_cols=43 Identities=23% Similarity=0.590 Sum_probs=37.3
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhh---cCCCCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLS---LRNSCPVC 252 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~---~~~sCPvC 252 (409)
..+..|+||++.|. .++.++|+|.||..||..|++ .+.+||+|
T Consensus 18 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 44578999999988 577889999999999999998 45589998
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.06 E-value=5.9e-11 Score=100.90 Aligned_cols=53 Identities=23% Similarity=0.586 Sum_probs=45.9
Q ss_pred cCccccccccccccC----CCceeecccceeChhhhHHHhhcCCCCCCCCccCCCCC
Q 039088 208 LESHCAVCKEAFELG----SEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADN 260 (409)
Q Consensus 208 ~~~~C~ICle~f~~g----~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~ 260 (409)
.+..|+||++.|... ..++.++|+|.||..||..||+.+.+||+||+.+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 357899999998753 45588999999999999999999999999999986654
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.04 E-value=6.9e-11 Score=98.49 Aligned_cols=51 Identities=24% Similarity=0.669 Sum_probs=43.9
Q ss_pred cccCccccccccccccCCCceee-cccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 206 VELESHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 206 ~~~~~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
...+..|+||++.|. .++.+ +|+|.||..||..|+..+.+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 344678999999987 45666 9999999999999999999999999988654
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.02 E-value=6.3e-11 Score=97.12 Aligned_cols=47 Identities=34% Similarity=0.706 Sum_probs=41.5
Q ss_pred CccccccccccccCCCceee-cccceeChhhhHHHhhcCCCCCCCCccCCC
Q 039088 209 ESHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
+..|+||++.|. ..+.+ +|+|.||..||..|+..+.+||+||..+..
T Consensus 22 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhC---CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 478999999987 35556 899999999999999999999999998865
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.5e-10 Score=85.18 Aligned_cols=43 Identities=33% Similarity=0.820 Sum_probs=36.2
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhh---cCCCCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLS---LRNSCPVC 252 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~---~~~sCPvC 252 (409)
..+..|+||++.+.. .+.++|+|.||..||..|++ .+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345789999999874 56789999999999999954 56699998
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.00 E-value=2.7e-10 Score=91.93 Aligned_cols=48 Identities=29% Similarity=0.669 Sum_probs=41.5
Q ss_pred ccCccccccccccccCCCceeec-ccceeChhhhHHHhhcC--CCCCCCCccCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMP-CKHIYHSDCILPWLSLR--NSCPVCRHELP 257 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lP-C~H~FH~~CI~~WL~~~--~sCPvCR~~l~ 257 (409)
..+..|+||++.|. .++.++ |+|.||..||..|+..+ ..||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 44579999999887 578899 99999999999999754 49999999873
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.98 E-value=1.6e-10 Score=98.26 Aligned_cols=52 Identities=25% Similarity=0.666 Sum_probs=44.7
Q ss_pred cCcccccccccccc----CCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 208 LESHCAVCKEAFEL----GSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 208 ~~~~C~ICle~f~~----g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
....|+||++.|.. +...+.++|+|.||..||.+||+.+.+||+||..+...
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 35789999999875 23457889999999999999999999999999998654
No 39
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=3.1e-10 Score=85.96 Aligned_cols=52 Identities=23% Similarity=0.475 Sum_probs=41.2
Q ss_pred Ccccccccc-ccccCCCc-eeecccceeChhhhHHHhhc-CCCCCCCCccCCCCC
Q 039088 209 ESHCAVCKE-AFELGSEA-REMPCKHIYHSDCILPWLSL-RNSCPVCRHELPADN 260 (409)
Q Consensus 209 ~~~C~ICle-~f~~g~~~-~~lPC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~~ 260 (409)
+..|+||++ .|...... ..++|+|.||..||.+|+.. ...||+||+.+...+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 468999999 77654332 46789999999999999765 458999999986543
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.97 E-value=3.5e-10 Score=96.43 Aligned_cols=48 Identities=27% Similarity=0.543 Sum_probs=42.1
Q ss_pred cCccccccccccccCCCceeecccceeChhhhHHHhhcCC-CCCCCCccCCC
Q 039088 208 LESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRN-SCPVCRHELPA 258 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~ 258 (409)
.+..|+||++.|. .++.++|+|.||..||..|+..+. +||+||..+..
T Consensus 51 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3478999999988 577889999999999999998655 99999999865
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.95 E-value=2.1e-10 Score=102.56 Aligned_cols=49 Identities=29% Similarity=0.704 Sum_probs=41.6
Q ss_pred ccCccccccccccccCCCceee-cccceeChhhhHHHhhc-CCCCCCCCccCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLSL-RNSCPVCRHELPA 258 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~ 258 (409)
..+..|+||++.|.. ++.+ +|+|.||..||..||+. +.+||+||..+..
T Consensus 52 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 345789999999883 5555 89999999999999987 7799999998854
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.95 E-value=1.3e-10 Score=103.04 Aligned_cols=49 Identities=29% Similarity=0.619 Sum_probs=42.9
Q ss_pred cCccccccccccccCCCceeecccceeChhhhHHHhhcCC-CCCCCCccCCCC
Q 039088 208 LESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRN-SCPVCRHELPAD 259 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~~ 259 (409)
.+..|+||++.|. .++.++|+|.||..||..|+.... +||+||..+...
T Consensus 77 ~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3478999999887 567799999999999999998765 899999998765
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=3.8e-10 Score=93.88 Aligned_cols=49 Identities=27% Similarity=0.766 Sum_probs=41.6
Q ss_pred CccccccccccccCCCceeecccceeChhhhHHHhhcCC---CCCCCCccCCCCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRN---SCPVCRHELPADN 260 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~---sCPvCR~~l~~~~ 260 (409)
...|+||++.|. .++.++|+|.||..||..|+..+. +||+||..+....
T Consensus 21 ~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhc---CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 368999999887 456689999999999999998764 8999999887643
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.92 E-value=2.1e-10 Score=96.52 Aligned_cols=48 Identities=27% Similarity=0.717 Sum_probs=41.9
Q ss_pred cCccccccccccccCCCceeecccceeChhhhHHHhhc-CCCCCCCCccCCC
Q 039088 208 LESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSL-RNSCPVCRHELPA 258 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~ 258 (409)
.+..|+||++.|. .++.++|+|.||..||..|+.. +.+||+||..+..
T Consensus 14 ~~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCS---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccC---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3578999999887 5778899999999999999977 5699999998854
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.87 E-value=7.2e-10 Score=93.89 Aligned_cols=50 Identities=30% Similarity=0.618 Sum_probs=42.9
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhhcCC-CCCCCCccCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRN-SCPVCRHELPAD 259 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~~ 259 (409)
..+..|+||++.+. .++.++|+|.||..||..|++.+. +||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 44579999999887 467789999999999999998866 999999988653
No 46
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=9.5e-10 Score=81.40 Aligned_cols=47 Identities=23% Similarity=0.589 Sum_probs=39.9
Q ss_pred cCccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCCC
Q 039088 208 LESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADN 260 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~ 260 (409)
.+..|+||++.|. .++.|+|+|.||..||..| ...||+||+.+....
T Consensus 5 ~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 5 QFLRCQQCQAEAK---CPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCB---CCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred cCCCceEeCCccC---CeEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 3578999999988 4688999999999999885 668999999886653
No 47
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.84 E-value=1.2e-09 Score=110.53 Aligned_cols=48 Identities=27% Similarity=0.776 Sum_probs=42.4
Q ss_pred CccccccccccccCCCceeecccceeChhhhHHHhh-cCCCCCCCCccCCCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLS-LRNSCPVCRHELPAD 259 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~-~~~sCPvCR~~l~~~ 259 (409)
...|+||++.+. .++.+||+|.||..||..|+. .+.+||+||..+...
T Consensus 332 ~~~C~ICle~~~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBC---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCC---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 368999999886 578899999999999999998 678999999988654
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.83 E-value=2.3e-09 Score=88.93 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=44.7
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
..+..|+||++.|. .+++++|||.|+..||..||..+.+||+|+..+...
T Consensus 27 p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMT---DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCS---SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCccc---CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 34579999999988 688999999999999999999888999999988654
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.82 E-value=1.9e-09 Score=86.67 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=44.4
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
..+..|+||++.|+ .+++++|||.|+..||..||..+.+||+|+..+...
T Consensus 12 p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT---DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhc---CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 34589999999988 688899999999999999999889999999988643
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.81 E-value=1.4e-09 Score=91.52 Aligned_cols=49 Identities=29% Similarity=0.714 Sum_probs=42.5
Q ss_pred CccccccccccccCCCceeecccceeChhhhHHHhhc-CCCCCCCCccCCCCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSL-RNSCPVCRHELPADN 260 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~~ 260 (409)
+..|+||++.+. .++.++|+|.||..||..|+.. ..+||+||..+...+
T Consensus 23 ~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 468999999987 5677899999999999999987 679999999886543
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.81 E-value=2.4e-09 Score=81.59 Aligned_cols=47 Identities=19% Similarity=0.454 Sum_probs=40.1
Q ss_pred cCccccccccccccCCCceee--cccce-eChhhhHHHhhcCCCCCCCCccCC
Q 039088 208 LESHCAVCKEAFELGSEAREM--PCKHI-YHSDCILPWLSLRNSCPVCRHELP 257 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~l--PC~H~-FH~~CI~~WL~~~~sCPvCR~~l~ 257 (409)
.+..|.||++.+. .+..+ ||+|. |+..|+..|++.+..||+||+.+.
T Consensus 7 ~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPK---NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCS---CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCC---CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3468999999866 44555 99999 899999999998899999999874
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.80 E-value=2.8e-09 Score=88.10 Aligned_cols=50 Identities=16% Similarity=0.085 Sum_probs=44.6
Q ss_pred ccCccccccccccccCCCceeeccc-ceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCK-HIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~-H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
..+..|+||++.|+ .+++++|+ |.|+..||..||..+.+||+|+..|...
T Consensus 20 p~~~~CpI~~~~m~---dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC---DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCcccccc---CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 34579999999988 68889999 9999999999999888999999988654
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.80 E-value=6.8e-10 Score=97.57 Aligned_cols=51 Identities=27% Similarity=0.574 Sum_probs=43.2
Q ss_pred cccCccccccccccccCCCceeecccceeChhhhHHHhhcCC-CCCCCCccCCCC
Q 039088 206 VELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRN-SCPVCRHELPAD 259 (409)
Q Consensus 206 ~~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~~ 259 (409)
...+..|+||++.|. .++.++|+|.||..||..|++... +||+||.++...
T Consensus 28 l~~~~~C~IC~~~~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 28 LEAKYLCSACRNVLR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CCcCcCCCCCChhhc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 345689999999987 457789999999999999998765 999999987543
No 54
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.80 E-value=6.4e-09 Score=82.52 Aligned_cols=54 Identities=26% Similarity=0.526 Sum_probs=42.2
Q ss_pred ccCccccccccccccCCCceeec--ccceeChhhhHHHhhc-CCCCCCCCccCCCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMP--CKHIYHSDCILPWLSL-RNSCPVCRHELPADNN 261 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lP--C~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~~~ 261 (409)
..+..|+||++.+...+ .+.+| |+|.||..||..|+.. ...||+||+.+.....
T Consensus 9 ~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 44578999999886433 34444 9999999999999854 5689999999876644
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=3.2e-09 Score=89.77 Aligned_cols=45 Identities=27% Similarity=0.672 Sum_probs=39.6
Q ss_pred CccccccccccccCCCceee-cccceeChhhhHHHhhcCCCCCCCCccCCC
Q 039088 209 ESHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
+..|+||++.|. .++.+ +|+|.||..||..|+. ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred CCCCCCCChHhh---CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 478999999987 56677 8999999999999998 789999998854
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.74 E-value=5.2e-09 Score=79.42 Aligned_cols=47 Identities=21% Similarity=0.542 Sum_probs=39.8
Q ss_pred cCccccccccccccCCCceee--cccce-eChhhhHHHhhcCCCCCCCCccCC
Q 039088 208 LESHCAVCKEAFELGSEAREM--PCKHI-YHSDCILPWLSLRNSCPVCRHELP 257 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~l--PC~H~-FH~~CI~~WL~~~~sCPvCR~~l~ 257 (409)
.+..|.||++... .+..+ ||+|. |+..|+..|.+.+..||+||+.+.
T Consensus 6 ~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPR---DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBS---CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCC---CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3578999999765 34455 99999 999999999988889999999874
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.71 E-value=1.4e-09 Score=85.01 Aligned_cols=43 Identities=23% Similarity=0.610 Sum_probs=38.0
Q ss_pred CccccccccccccCCCceeecccce-eChhhhHHHhhcCCCCCCCCccCCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHI-YHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
+..|+||++.+. .++.+||+|. ||..|+..| ..||+||..+..
T Consensus 24 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNI---AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBC---CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCC---CEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 468999999876 6788999999 999999999 889999998754
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.58 E-value=2.8e-08 Score=94.36 Aligned_cols=49 Identities=20% Similarity=0.117 Sum_probs=42.4
Q ss_pred cCccccccccccccCCCceeecccceeChhhhHHHhhcC-CCCCCCCccCCCC
Q 039088 208 LESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLR-NSCPVCRHELPAD 259 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~-~sCPvCR~~l~~~ 259 (409)
....|+||++.|. .++++||||.||..||..||..+ .+||+|+.++...
T Consensus 207 ~~~~c~i~~~~~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred cccCCcCcCCHhc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 4578999999988 68899999999999999999874 4699999988543
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=1.7e-08 Score=82.45 Aligned_cols=48 Identities=27% Similarity=0.618 Sum_probs=40.5
Q ss_pred cCccccccccccccCCCceeec-ccceeChhhhHHHhhcC------CCCCC--CCcc-CCC
Q 039088 208 LESHCAVCKEAFELGSEAREMP-CKHIYHSDCILPWLSLR------NSCPV--CRHE-LPA 258 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lP-C~H~FH~~CI~~WL~~~------~sCPv--CR~~-l~~ 258 (409)
.+..|+||++.|. .+++++ |+|.|+..||..||..+ .+||+ |++. |..
T Consensus 6 ~~~~CPI~~~~~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 6 SGFTCPITKEEMK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SCCBCTTTCSBCS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred cEeECcCcCchhc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 4578999999988 688886 99999999999999764 48999 9876 543
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.54 E-value=2.9e-08 Score=88.92 Aligned_cols=50 Identities=30% Similarity=0.618 Sum_probs=42.6
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhhcCC-CCCCCCccCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRN-SCPVCRHELPAD 259 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~~ 259 (409)
..+..|+||++.|. .++.++|+|.||..||.+|+.... +||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 44579999999987 457789999999999999997754 999999988654
No 61
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.51 E-value=5.4e-08 Score=73.46 Aligned_cols=48 Identities=27% Similarity=0.699 Sum_probs=37.3
Q ss_pred cCccccccccccccCCCceeeccc--c---eeChhhhHHHhhc--CCCCCCCCccCCC
Q 039088 208 LESHCAVCKEAFELGSEAREMPCK--H---IYHSDCILPWLSL--RNSCPVCRHELPA 258 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~--H---~FH~~CI~~WL~~--~~sCPvCR~~l~~ 258 (409)
....|.||+++. ++. .++||. | .||..||.+||.. +.+||+|++++..
T Consensus 5 ~~~~CrIC~~~~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEEC--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCC--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 457899999873 233 468954 4 8999999999975 5689999998753
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.50 E-value=2.9e-08 Score=98.68 Aligned_cols=52 Identities=25% Similarity=0.592 Sum_probs=39.8
Q ss_pred cCccccccccccccCCCce-----eecccceeChhhhHHHhhcC-----------CCCCCCCccCCCC
Q 039088 208 LESHCAVCKEAFELGSEAR-----EMPCKHIYHSDCILPWLSLR-----------NSCPVCRHELPAD 259 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~-----~lPC~H~FH~~CI~~WL~~~-----------~sCPvCR~~l~~~ 259 (409)
...+|+||++.+..+..+- ...|+|.||..||.+||+.. .+||.||++|...
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 4578999999988633221 23599999999999999753 3699999988643
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=6.8e-08 Score=75.36 Aligned_cols=43 Identities=21% Similarity=0.590 Sum_probs=36.5
Q ss_pred ccccccccccccCCCceeecccce-eChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHI-YHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
..|+||++.+. .++.+||+|. ||..|+.. ...||+||..+...
T Consensus 26 ~~C~IC~~~~~---~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 26 KLCKICMDRNI---AIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HSCSSSCSSCC---CBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCcCCCCCC---CEEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 57999999876 5778999999 99999964 47899999988653
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=1.2e-07 Score=73.12 Aligned_cols=45 Identities=24% Similarity=0.654 Sum_probs=38.0
Q ss_pred cCccccccccccccCCCceeecccce-eChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 208 LESHCAVCKEAFELGSEAREMPCKHI-YHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
.+..|.||++... .++.+||+|. ||..|+.. ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 3578999998765 6888999999 99999984 57899999988654
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.41 E-value=1.3e-07 Score=86.44 Aligned_cols=50 Identities=22% Similarity=0.115 Sum_probs=42.9
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhhcC-CCCCCCCccCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLR-NSCPVCRHELPAD 259 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~-~sCPvCR~~l~~~ 259 (409)
.....|+||++.|. .++++||||.|+..||..||..+ .+||+|+.++...
T Consensus 104 p~~f~CPI~~elm~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 34579999999988 68888999999999999999874 4799999988654
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.32 E-value=9.9e-08 Score=75.61 Aligned_cols=44 Identities=32% Similarity=0.636 Sum_probs=37.6
Q ss_pred CccccccccccccCCCceeecccce-eChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHI-YHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
+..|.||++.+. .++.+||+|. ||..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEI---NSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBC---CEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccC---cEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 368999999876 6788999999 999999987 3999999987554
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.24 E-value=2.8e-07 Score=74.73 Aligned_cols=47 Identities=23% Similarity=0.628 Sum_probs=37.5
Q ss_pred CccccccccccccCCCceeecccceeChhhhHHHhhcC--------CCCCC--CCcc
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLR--------NSCPV--CRHE 255 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~--------~sCPv--CR~~ 255 (409)
...|+||++.+.....+..++|+|.||..||..+++.+ -.||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 46899999998754444444799999999999999642 37999 9987
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.23 E-value=3e-07 Score=69.50 Aligned_cols=48 Identities=10% Similarity=0.230 Sum_probs=42.5
Q ss_pred ccccccccccccCCCceee-cccceeChhhhHHHhhcCCCCCCCCccCCCCC
Q 039088 210 SHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLSLRNSCPVCRHELPADN 260 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~ 260 (409)
..|+||++.++ ..+.+ +|||.|...||.+||+.+.+||+++.+|...+
T Consensus 4 ~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 57999999988 56777 89999999999999998889999999986654
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.21 E-value=4.5e-07 Score=90.72 Aligned_cols=44 Identities=27% Similarity=0.690 Sum_probs=38.6
Q ss_pred cCccccccccccccCCCceeecccce-eChhhhHHHhhcCCCCCCCCccCCC
Q 039088 208 LESHCAVCKEAFELGSEAREMPCKHI-YHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
.+..|+||++.+. .++.+||+|. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~---~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEV---SVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBC---CEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCC---ceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 4578999999886 6788999999 999999998 789999998753
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.04 E-value=1.6e-06 Score=83.38 Aligned_cols=50 Identities=22% Similarity=0.556 Sum_probs=40.7
Q ss_pred ccCccccccccccccCCCcee-ecccceeChhhhHHHhhcC--CCCCC--CCccCCCC
Q 039088 207 ELESHCAVCKEAFELGSEARE-MPCKHIYHSDCILPWLSLR--NSCPV--CRHELPAD 259 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~-lPC~H~FH~~CI~~WL~~~--~sCPv--CR~~l~~~ 259 (409)
..+..|+||++.|. .++. +.|||.|+..||..|+..+ .+||+ |++.+...
T Consensus 179 ~~el~CPIcl~~f~---DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 179 KIELTCPITCKPYE---APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp BCCSBCTTTSSBCS---SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred ceeeECcCccCccc---CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 34578999999997 4554 5899999999999999865 37999 99977543
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.82 E-value=8.6e-06 Score=67.30 Aligned_cols=47 Identities=26% Similarity=0.647 Sum_probs=38.2
Q ss_pred cccccccccccCCCceeecccceeChhhhHHHhhc-CCCCCCCCccCCCC
Q 039088 211 HCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSL-RNSCPVCRHELPAD 259 (409)
Q Consensus 211 ~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~ 259 (409)
-|.+|--.+.. ..+.+||+|+||.+|+..|.+. .++||.|+.++..-
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 47788666653 7789999999999999999865 57999999987443
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.71 E-value=2e-05 Score=74.85 Aligned_cols=49 Identities=20% Similarity=0.564 Sum_probs=40.1
Q ss_pred CccccccccccccCCCceeec-ccceeChhhhHHHhhcCC--CCCCCCccCCCCC
Q 039088 209 ESHCAVCKEAFELGSEAREMP-CKHIYHSDCILPWLSLRN--SCPVCRHELPADN 260 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lP-C~H~FH~~CI~~WL~~~~--sCPvCR~~l~~~~ 260 (409)
...|.||.+.+..+. ..+ |+|.||..|+..|++.+. .||.|+...+...
T Consensus 180 i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 180 VKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp CCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 468999999887543 333 999999999999998765 9999999876663
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.01 E-value=0.0062 Score=49.65 Aligned_cols=53 Identities=25% Similarity=0.585 Sum_probs=42.3
Q ss_pred CccccccccccccCCCceeecc-cceeChhhhHHHhhcCCCCCCCCccCCCCCCCCCCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPC-KHIYHSDCILPWLSLRNSCPVCRHELPADNNSNQSN 266 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC-~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~~~~~~ 266 (409)
-..|-.|+-+.+ ..+.| .|.+|..|+...|.....||+|+++|++.-......
T Consensus 28 ~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~~P 81 (99)
T 2ko5_A 28 PQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAAP 81 (99)
T ss_dssp CCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTTTSC
T ss_pred cccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceecCcCC
Confidence 468999997654 23335 799999999999999999999999999886554443
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.10 E-value=0.052 Score=41.34 Aligned_cols=46 Identities=24% Similarity=0.572 Sum_probs=32.6
Q ss_pred cCccccccccccccCCCceeecccceeChhhhHHHhhcCC----CCCCCCccC
Q 039088 208 LESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRN----SCPVCRHEL 256 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~----sCPvCR~~l 256 (409)
....|.||.+. ++.+.--.|...||..|+.+.|.... .||.|....
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34679999753 23222223999999999999986643 799997643
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.78 E-value=0.075 Score=42.77 Aligned_cols=33 Identities=15% Similarity=0.468 Sum_probs=24.7
Q ss_pred CccccccccccccCCCceeecccceeChhhhHH
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILP 241 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~ 241 (409)
+..|.||++.+.......-+.|+|.||..|+..
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 468999998654322222388999999999998
No 76
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.52 E-value=0.2 Score=37.24 Aligned_cols=46 Identities=30% Similarity=0.660 Sum_probs=31.2
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhhcC----CCCCCCCcc
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLR----NSCPVCRHE 255 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~----~sCPvCR~~ 255 (409)
..+..|.||.+. ++.+.--.|...||..|+.+-|... -.||.|...
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 345789999863 2222222389999999999866432 279999653
No 77
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=87.96 E-value=0.31 Score=36.16 Aligned_cols=46 Identities=30% Similarity=0.560 Sum_probs=31.4
Q ss_pred cCccccccccccccCCCceeecccceeChhhhHHHhhcC----CCCCCCCccC
Q 039088 208 LESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLR----NSCPVCRHEL 256 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~----~sCPvCR~~l 256 (409)
.+..|.||.+. ++.+.--.|...||..|+.+-|... -.||.|....
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 45789999762 2222222389999999999766542 2699997643
No 78
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=87.36 E-value=0.5 Score=37.75 Aligned_cols=32 Identities=22% Similarity=0.698 Sum_probs=23.1
Q ss_pred ccCccccccccccccCCCceeec---ccceeChhhhHHH
Q 039088 207 ELESHCAVCKEAFELGSEAREMP---CKHIYHSDCILPW 242 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lP---C~H~FH~~CI~~W 242 (409)
..+..|.||.- |... ..+| |+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~~-~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-cccc---ceeccccccccccHhhcccc
Confidence 35689999963 3322 2334 8999999999996
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=87.17 E-value=0.17 Score=37.66 Aligned_cols=47 Identities=19% Similarity=0.501 Sum_probs=32.4
Q ss_pred cCccccccccccccCCCceee-cccceeChhhhHHHhh-----cCCCCCCCCc
Q 039088 208 LESHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLS-----LRNSCPVCRH 254 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~-----~~~sCPvCR~ 254 (409)
+...|+||...+..+...+.- .|...||..|+.--.. ..-.||.|+.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 456799999887544333332 3999999999975432 2448999965
No 80
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=86.69 E-value=0.36 Score=40.48 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=26.5
Q ss_pred CCceecccCCcceeeccCCCCc-cCCCCCCCceeecc
Q 039088 7 SSSYWCYRCSRFVRVFSRDDVV-SCPDCDGGFVEEIE 42 (409)
Q Consensus 7 ~~~ywCh~C~r~V~~~~~~~~~-~CP~C~~GFiEEi~ 42 (409)
...|||..|...+.+. .... .||.|++..++-+.
T Consensus 71 p~~~~C~~CG~~~e~~--~~~~~~CP~Cgs~~~~i~~ 105 (119)
T 2kdx_A 71 KVELECKDCSHVFKPN--ALDYGVCEKCHSKNVIITQ 105 (119)
T ss_dssp CCEEECSSSSCEECSC--CSTTCCCSSSSSCCCEEEE
T ss_pred cceEEcCCCCCEEeCC--CCCCCcCccccCCCcEEec
Confidence 4689999999988653 4457 89999999776443
No 81
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.29 E-value=0.38 Score=34.06 Aligned_cols=44 Identities=27% Similarity=0.532 Sum_probs=28.6
Q ss_pred cccccccccccCCCceeecccceeChhhhHHHhhcC----CCCCCCCc
Q 039088 211 HCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLR----NSCPVCRH 254 (409)
Q Consensus 211 ~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~----~sCPvCR~ 254 (409)
.|.||.+.-..++.+.--.|...||..|+.+=|... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998653322222222399999999998755442 26999964
No 82
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.07 E-value=0.16 Score=36.93 Aligned_cols=45 Identities=33% Similarity=0.754 Sum_probs=30.3
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhhcCC----CCCCCCc
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRN----SCPVCRH 254 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~----sCPvCR~ 254 (409)
..+..|.||.+. ++.+.--.|...||..|+.+-|.... .||.|..
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 345789999874 32222224999999999997665422 5888843
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=85.79 E-value=0.32 Score=43.57 Aligned_cols=46 Identities=30% Similarity=0.606 Sum_probs=32.2
Q ss_pred cCccccccccccccCCCceeecccceeChhhhHHHhhcC----CCCCCCCccC
Q 039088 208 LESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLR----NSCPVCRHEL 256 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~----~sCPvCR~~l 256 (409)
.+..|.||.+. ++.+..=.|...||..|+.+-|... -.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35679999753 3322222399999999999887653 2799998644
No 84
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=85.61 E-value=0.32 Score=36.60 Aligned_cols=45 Identities=29% Similarity=0.613 Sum_probs=31.0
Q ss_pred cCccccccccccccCCCceeecccceeChhhhHHHhhcCC----CCCCCCcc
Q 039088 208 LESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRN----SCPVCRHE 255 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~----sCPvCR~~ 255 (409)
.+..|.||.+. ++.+.---|...||..|+.+-|.... .||.|...
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45789999863 22222223899999999997665422 69999653
No 85
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=85.24 E-value=0.86 Score=36.61 Aligned_cols=46 Identities=30% Similarity=0.645 Sum_probs=32.2
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhhcCC----CCCCCCcc
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRN----SCPVCRHE 255 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~----sCPvCR~~ 255 (409)
..+..|.||.+. ++.+.---|.-.||..|+.+=|.... .||.|...
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345789999864 33222223899999999988775532 79999764
No 86
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=84.78 E-value=0.31 Score=37.39 Aligned_cols=50 Identities=22% Similarity=0.439 Sum_probs=33.6
Q ss_pred cCccccccccccccCCCceee-cccceeChhhhHHHhhc----CCCCCCCCccCCC
Q 039088 208 LESHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLSL----RNSCPVCRHELPA 258 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~~----~~sCPvCR~~l~~ 258 (409)
....|.||..... ++..+.. -|...||..|+..-+.. .-.||.|+..+..
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 3467999987643 2222222 39999999999876543 3379999876643
No 87
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=83.24 E-value=0.65 Score=42.10 Aligned_cols=47 Identities=21% Similarity=0.500 Sum_probs=33.5
Q ss_pred ccccccccccccCCC---ceeec-ccceeChhhhHHH------hh-----cCCCCCCCCccC
Q 039088 210 SHCAVCKEAFELGSE---AREMP-CKHIYHSDCILPW------LS-----LRNSCPVCRHEL 256 (409)
Q Consensus 210 ~~C~ICle~f~~g~~---~~~lP-C~H~FH~~CI~~W------L~-----~~~sCPvCR~~l 256 (409)
..|+||...|..++. .+..- |...||..|+.-- +. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 469999999987663 33333 9999999998532 11 156999998743
No 88
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=82.45 E-value=0.76 Score=37.77 Aligned_cols=46 Identities=26% Similarity=0.524 Sum_probs=30.6
Q ss_pred cCccccccccccccCCCceeecccceeChhhhHHHhhc----CCCCCCCC
Q 039088 208 LESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSL----RNSCPVCR 253 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~----~~sCPvCR 253 (409)
.+..|.||.+.=+..+.+.--.|...||..||...+.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 46789999875332222333349999999999988743 22677664
No 89
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=82.31 E-value=0.36 Score=36.02 Aligned_cols=50 Identities=22% Similarity=0.503 Sum_probs=33.0
Q ss_pred ccCccccccccccccC-CCceee-cccceeChhhhHHHhhc-------CCCCCCCCccC
Q 039088 207 ELESHCAVCKEAFELG-SEAREM-PCKHIYHSDCILPWLSL-------RNSCPVCRHEL 256 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g-~~~~~l-PC~H~FH~~CI~~WL~~-------~~sCPvCR~~l 256 (409)
..+..|.||....... ..+... -|...||..|+.+-|.. .-.||.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 3457899999764332 222222 39999999999986532 23799996643
No 90
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=81.24 E-value=0.44 Score=43.62 Aligned_cols=45 Identities=31% Similarity=0.611 Sum_probs=31.8
Q ss_pred cCccccccccccccCCCceee-cccceeChhhhHHHhhcC----CCCCCCCccC
Q 039088 208 LESHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLSLR----NSCPVCRHEL 256 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~~~----~sCPvCR~~l 256 (409)
.+..|.||.+. ++ +... .|...||..|+.+-|... -.||.|+..-
T Consensus 6 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45789999753 22 2222 289999999999887653 2799998644
No 91
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=80.14 E-value=0.47 Score=34.88 Aligned_cols=46 Identities=33% Similarity=0.776 Sum_probs=31.5
Q ss_pred cCccccccccccccCCCceeecccceeChhhhHHHhhcCC----CCCCCCccC
Q 039088 208 LESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRN----SCPVCRHEL 256 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~----sCPvCR~~l 256 (409)
.+..|.||.+. ++.+.--.|...||..|+.+-|.... .||.|....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 45789999873 32222223999999999997665422 699996644
No 92
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=80.05 E-value=1 Score=35.48 Aligned_cols=36 Identities=22% Similarity=0.484 Sum_probs=26.6
Q ss_pred CCCceecccCCcceeeccCCCCccCCCCCCCceeec
Q 039088 6 SSSSYWCYRCSRFVRVFSRDDVVSCPDCDGGFVEEI 41 (409)
Q Consensus 6 ~~~~ywCh~C~r~V~~~~~~~~~~CP~C~~GFiEEi 41 (409)
....+||..|...|........++||.|+.-|-=.-
T Consensus 22 ~~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C 57 (86)
T 2ct7_A 22 DPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRC 57 (86)
T ss_dssp CCCEECCSSSCCCEECCCSCSCEECTTTCCEECSSS
T ss_pred CCCEeECcCCCchheecCCCCceEeCCCCCcccccc
Confidence 346779999999875543445689999998887544
No 93
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=78.52 E-value=0.85 Score=41.30 Aligned_cols=44 Identities=32% Similarity=0.650 Sum_probs=31.2
Q ss_pred CccccccccccccCCCceeecccceeChhhhHHHhhcC----CCCCCCCcc
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLR----NSCPVCRHE 255 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~----~sCPvCR~~ 255 (409)
+..|.||.+. ++.+..-.|...||..|+.+=|... -.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4679999753 3333333489999999998766542 279999765
No 94
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=78.25 E-value=1.2 Score=36.82 Aligned_cols=44 Identities=23% Similarity=0.537 Sum_probs=28.9
Q ss_pred cccccccccccCCCceee-cccceeChhhhHHHhhcC----CCCCCCCc
Q 039088 211 HCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLSLR----NSCPVCRH 254 (409)
Q Consensus 211 ~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~~~----~sCPvCR~ 254 (409)
.|.||.+.-...+.+..- .|...||..|+.+-|... -.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688887642222222222 399999999998876543 27999975
No 95
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.09 E-value=0.51 Score=37.64 Aligned_cols=49 Identities=24% Similarity=0.596 Sum_probs=33.4
Q ss_pred CccccccccccccC-CCceee-cccceeChhhhHHHhhc--------CCCCCCCCccCC
Q 039088 209 ESHCAVCKEAFELG-SEAREM-PCKHIYHSDCILPWLSL--------RNSCPVCRHELP 257 (409)
Q Consensus 209 ~~~C~ICle~f~~g-~~~~~l-PC~H~FH~~CI~~WL~~--------~~sCPvCR~~l~ 257 (409)
+..|.||...-... ..+... -|...||..|+.+-|.. .-.|+.|.....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 56899998753321 222222 29999999999987652 237999977554
No 96
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=75.98 E-value=1.3 Score=38.15 Aligned_cols=33 Identities=21% Similarity=0.606 Sum_probs=24.7
Q ss_pred CCceecccCCcceeecc---------CCC----------CccCCCCCCCcee
Q 039088 7 SSSYWCYRCSRFVRVFS---------RDD----------VVSCPDCDGGFVE 39 (409)
Q Consensus 7 ~~~ywCh~C~r~V~~~~---------~~~----------~~~CP~C~~GFiE 39 (409)
...+||..|...+.+.. ... ...||.|++.-++
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~ 119 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFE 119 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEE
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccE
Confidence 46899999999876541 003 5789999998776
No 97
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=75.85 E-value=1.4 Score=35.73 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=28.9
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHhhc---CCCCCCCCc
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSL---RNSCPVCRH 254 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~---~~sCPvCR~ 254 (409)
..| ||......+..+.---|...||..|+..=+.. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 88776554332222239999999999864433 238999964
No 98
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.07 E-value=0.71 Score=37.13 Aligned_cols=46 Identities=30% Similarity=0.512 Sum_probs=30.9
Q ss_pred CccccccccccccCCCceee-cccceeChhhhHHHhhcCC----CCCCCCcc
Q 039088 209 ESHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLSLRN----SCPVCRHE 255 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~~~~----sCPvCR~~ 255 (409)
+..|.||...-... .++.. -|...||..|+.+=|.... .||.|...
T Consensus 16 ~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 16 SYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 46799998754321 22222 3999999999986654422 69999664
No 99
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=73.40 E-value=2.3 Score=47.54 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=42.6
Q ss_pred cCccccccccccccCCCceeeccc-ceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 208 LESHCAVCKEAFELGSEAREMPCK-HIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC~-H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
.+..|+|-++-+. .++++|.+ +.|-..+|.+||..+.+||+=|.+|...
T Consensus 890 ~~F~cPIs~~lM~---DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 890 DEFLDPLMYTIMK---DPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp GGGBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred HHhCCcchhhHHh---CCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 3478999988877 78899987 6899999999999999999999988654
No 100
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=72.64 E-value=2.1 Score=30.51 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=28.6
Q ss_pred cccccccccccCCCceee--cccceeChhhhHHHh----hcCCCCCCCC
Q 039088 211 HCAVCKEAFELGSEAREM--PCKHIYHSDCILPWL----SLRNSCPVCR 253 (409)
Q Consensus 211 ~C~ICle~f~~g~~~~~l--PC~H~FH~~CI~~WL----~~~~sCPvCR 253 (409)
.|.||...+..+...+.- .|...||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 477898887644433332 488899999986432 2455899885
No 101
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=72.09 E-value=2.9 Score=34.42 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=27.9
Q ss_pred cCccccccccccc-----cCCCce-eecccceeChhhhHHH------hhc-CCCCCCCC
Q 039088 208 LESHCAVCKEAFE-----LGSEAR-EMPCKHIYHSDCILPW------LSL-RNSCPVCR 253 (409)
Q Consensus 208 ~~~~C~ICle~f~-----~g~~~~-~lPC~H~FH~~CI~~W------L~~-~~sCPvCR 253 (409)
....|.+|+..-. .+++.. --.|...||..||..+ +.. .-.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 3468999987521 112222 2239999999999632 222 33677775
No 102
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.85 E-value=2.4 Score=32.73 Aligned_cols=46 Identities=20% Similarity=0.518 Sum_probs=29.9
Q ss_pred ccccccccccccCCCceee-cccceeChhhhHHHhh-----cCCCCCCCCccC
Q 039088 210 SHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLS-----LRNSCPVCRHEL 256 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~-----~~~sCPvCR~~l 256 (409)
..| ||...+......+.. -|...||..|+.--.. ..-.||.|+...
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 456 998877533332332 3999999999963321 234899998754
No 103
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=70.94 E-value=2.5 Score=31.86 Aligned_cols=34 Identities=18% Similarity=0.537 Sum_probs=28.6
Q ss_pred CCceecccCCcceeeccCCCCccCCCCCCCceeec
Q 039088 7 SSSYWCYRCSRFVRVFSRDDVVSCPDCDGGFVEEI 41 (409)
Q Consensus 7 ~~~ywCh~C~r~V~~~~~~~~~~CP~C~~GFiEEi 41 (409)
...|-|-.|...|.+. ..+.+.||.|+.-.|-..
T Consensus 19 ~v~Y~C~~Cg~~~~l~-~~~~iRC~~CG~RILyK~ 52 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQ-AKEVIRCRECGHRVMYKM 52 (63)
T ss_dssp CCCCBCSSSCCBCCCC-SSSCCCCSSSCCCCCBCC
T ss_pred CeEEECCCCCCeeecC-CCCceECCCCCcEEEEEe
Confidence 4679999999999887 557899999999887654
No 104
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=69.57 E-value=1.2 Score=34.74 Aligned_cols=25 Identities=40% Similarity=0.806 Sum_probs=19.5
Q ss_pred ccceeChhhhHHHhhcC-----CCCCCCCc
Q 039088 230 CKHIYHSDCILPWLSLR-----NSCPVCRH 254 (409)
Q Consensus 230 C~H~FH~~CI~~WL~~~-----~sCPvCR~ 254 (409)
|...||..|+.+-|... -.||.|+.
T Consensus 47 C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 47 CDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCccCcccCCCcccCCCCCCceECcCccc
Confidence 89999999999876542 36999975
No 105
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=67.70 E-value=3.8 Score=29.11 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=26.4
Q ss_pred CceecccCCcceeecc--CCCCccCCCCCCCceeeccc
Q 039088 8 SSYWCYRCSRFVRVFS--RDDVVSCPDCDGGFVEEIEN 43 (409)
Q Consensus 8 ~~ywCh~C~r~V~~~~--~~~~~~CP~C~~GFiEEi~~ 43 (409)
..|-|-.|-+.+.... ...++.||.|+=.-|..+-.
T Consensus 2 ~iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii~KvR~ 39 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRK 39 (48)
T ss_dssp ---CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECCCC
T ss_pred cEEEeeccCCCccHHHHhhCCCcccCccCcEEEEEecC
Confidence 4689999999986542 45789999999888877643
No 106
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.40 E-value=5.8 Score=31.87 Aligned_cols=44 Identities=25% Similarity=0.581 Sum_probs=27.4
Q ss_pred CccccccccccccCCCceeec--cc-ceeChhhhHHHhhc----CCCCCCCCccC
Q 039088 209 ESHCAVCKEAFELGSEAREMP--CK-HIYHSDCILPWLSL----RNSCPVCRHEL 256 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lP--C~-H~FH~~CI~~WL~~----~~sCPvCR~~l 256 (409)
...| ||..... +.-+.-=. |. ..||..||. |.. +-.||.|+...
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3567 9988543 33222222 55 689999997 433 33799997644
No 107
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.06 E-value=2 Score=33.37 Aligned_cols=44 Identities=30% Similarity=0.581 Sum_probs=28.1
Q ss_pred ccccccccccccCCCceee-cccceeChhhhHHHhhc-----CCCCCCCCc
Q 039088 210 SHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLSL-----RNSCPVCRH 254 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~~-----~~sCPvCR~ 254 (409)
..|.||...-.. ..+..- .|...||..|+.+=|.. .-.||.|..
T Consensus 27 c~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 367888753222 222222 38999999999976643 226999864
No 108
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=65.59 E-value=4.6 Score=30.77 Aligned_cols=44 Identities=25% Similarity=0.581 Sum_probs=26.7
Q ss_pred CccccccccccccCCCceeec--cc-ceeChhhhHHHhhc----CCCCCCCCccC
Q 039088 209 ESHCAVCKEAFELGSEAREMP--CK-HIYHSDCILPWLSL----RNSCPVCRHEL 256 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lP--C~-H~FH~~CI~~WL~~----~~sCPvCR~~l 256 (409)
...| ||..... +.-+.-=. |. ..||..||. |.. +-.||.|+...
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 4567 8987532 32111112 55 689999997 433 23799997644
No 109
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=64.93 E-value=4.3 Score=31.10 Aligned_cols=33 Identities=30% Similarity=0.653 Sum_probs=26.0
Q ss_pred CCCceecccCCcceeeccCCCCccCCCCCCCcee
Q 039088 6 SSSSYWCYRCSRFVRVFSRDDVVSCPDCDGGFVE 39 (409)
Q Consensus 6 ~~~~ywCh~C~r~V~~~~~~~~~~CP~C~~GFiE 39 (409)
..-.|-|-.|...+.+. ..+.+.||.|+.--|-
T Consensus 25 ~~v~Y~C~~CG~~~e~~-~~d~irCp~CG~RILy 57 (70)
T 1twf_L 25 ATLKYICAECSSKLSLS-RTDAVRCKDCGHRILL 57 (70)
T ss_dssp CCCCEECSSSCCEECCC-TTSTTCCSSSCCCCCB
T ss_pred ceEEEECCCCCCcceeC-CCCCccCCCCCceEeE
Confidence 35679999999998776 5577899999985443
No 110
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=64.72 E-value=3.4 Score=31.01 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=24.6
Q ss_pred cCccccccccccccCCCceee--cccceeChhhhHH
Q 039088 208 LESHCAVCKEAFELGSEAREM--PCKHIYHSDCILP 241 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~l--PC~H~FH~~CI~~ 241 (409)
....|.+|...+......+.. .|.-.||..|+.-
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 346899999988765544443 5999999999853
No 111
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=64.60 E-value=1.5 Score=33.28 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=29.4
Q ss_pred ccccccccccccCCCceee-cccceeChhhhHHHh----hcCCCCCCCCcc
Q 039088 210 SHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWL----SLRNSCPVCRHE 255 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL----~~~~sCPvCR~~ 255 (409)
..| ||......+...+.. .|...||..|+.--. ..+-.||.|+..
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 568 798765544323332 399999999987532 224479999653
No 112
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=64.21 E-value=4 Score=28.61 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=26.1
Q ss_pred CceecccCCc-ceeeccCCCCccCCCCCCCceeeccc
Q 039088 8 SSYWCYRCSR-FVRVFSRDDVVSCPDCDGGFVEEIEN 43 (409)
Q Consensus 8 ~~ywCh~C~r-~V~~~~~~~~~~CP~C~~GFiEEi~~ 43 (409)
..+-|-.|.. .+.......+++|+.|+--|=|++.+
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~id 40 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVIEENIID 40 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCCC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcccccccc
Confidence 4577999987 55444456789999998877666543
No 113
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=62.52 E-value=5.8 Score=34.45 Aligned_cols=45 Identities=24% Similarity=0.544 Sum_probs=30.6
Q ss_pred ccCccccccccccccCCCceeecccceeChhhhHHHhh-----------cCCCCCCCCc
Q 039088 207 ELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLS-----------LRNSCPVCRH 254 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~-----------~~~sCPvCR~ 254 (409)
..+..|.||.+. |+-+.-=.|-..||..||.+-|. ..-.||+|..
T Consensus 61 g~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 345789999763 22222224999999999998763 1227999964
No 114
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=62.30 E-value=3 Score=31.85 Aligned_cols=48 Identities=15% Similarity=0.282 Sum_probs=30.1
Q ss_pred ccCcccccccccc-ccCCCceee-cccceeChhhhHHHhh--cCCCCCCCCc
Q 039088 207 ELESHCAVCKEAF-ELGSEAREM-PCKHIYHSDCILPWLS--LRNSCPVCRH 254 (409)
Q Consensus 207 ~~~~~C~ICle~f-~~g~~~~~l-PC~H~FH~~CI~~WL~--~~~sCPvCR~ 254 (409)
..+..|.||.+.- ...+.+... .|.-.||..|+.+-+. ..-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3457899998753 222222222 3899999999986431 1226888854
No 115
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=59.81 E-value=43 Score=26.89 Aligned_cols=51 Identities=18% Similarity=0.338 Sum_probs=36.0
Q ss_pred CccccccccccccCCC----ceeecccceeChhhhHHHhh-cCCCCCCCCccCCCC
Q 039088 209 ESHCAVCKEAFELGSE----AREMPCKHIYHSDCILPWLS-LRNSCPVCRHELPAD 259 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~----~~~lPC~H~FH~~CI~~WL~-~~~sCPvCR~~l~~~ 259 (409)
...|.||-+++..... +...-|.--.|..|..-=.+ .++.||-|+..+...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 3689999998754432 12223787889999865554 466999999988644
No 116
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=59.72 E-value=1.9 Score=34.26 Aligned_cols=51 Identities=14% Similarity=0.245 Sum_probs=31.8
Q ss_pred ccCccccccccccc-cCCCceee-cccceeChhhhHHHhh--cCCCCCCCCccCC
Q 039088 207 ELESHCAVCKEAFE-LGSEAREM-PCKHIYHSDCILPWLS--LRNSCPVCRHELP 257 (409)
Q Consensus 207 ~~~~~C~ICle~f~-~g~~~~~l-PC~H~FH~~CI~~WL~--~~~sCPvCR~~l~ 257 (409)
..+..|.||.+.-. ..+.+... -|.-.||..|+.+-+. ..-.||.|.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 34578999987531 11122222 3888999999986432 1237999976543
No 117
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=59.68 E-value=2.8 Score=31.88 Aligned_cols=25 Identities=40% Similarity=0.838 Sum_probs=19.6
Q ss_pred ccceeChhhhHHHhhc-----CCCCCCCCc
Q 039088 230 CKHIYHSDCILPWLSL-----RNSCPVCRH 254 (409)
Q Consensus 230 C~H~FH~~CI~~WL~~-----~~sCPvCR~ 254 (409)
|...||..|+.+=|.. .-.||.|..
T Consensus 39 C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 39 CDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 8999999999976643 227999965
No 118
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=59.12 E-value=1.9 Score=37.94 Aligned_cols=47 Identities=23% Similarity=0.487 Sum_probs=30.8
Q ss_pred cCccccccccccccCCCceee-cccceeChhhhHHHhh-----cCCCCCCCCcc
Q 039088 208 LESHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLS-----LRNSCPVCRHE 255 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~-----~~~sCPvCR~~ 255 (409)
....| ||...+..+...+.. -|...||..|+.--.. ..-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34678 998876533333333 3999999999953221 24489999763
No 119
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=59.04 E-value=5.2 Score=32.76 Aligned_cols=47 Identities=19% Similarity=0.428 Sum_probs=33.1
Q ss_pred ccccccccccccCCCceee--cccceeChhhhHHHhh----------cCCCCCCCCccC
Q 039088 210 SHCAVCKEAFELGSEAREM--PCKHIYHSDCILPWLS----------LRNSCPVCRHEL 256 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~l--PC~H~FH~~CI~~WL~----------~~~sCPvCR~~l 256 (409)
..|.||...+......+.. .|...||..|+.--.. .+-.||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 5799999988655444444 4899999999853210 244899997653
No 120
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=59.00 E-value=3.3 Score=38.77 Aligned_cols=45 Identities=27% Similarity=0.531 Sum_probs=25.5
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHhhcC-----CCCCCCCc
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLR-----NSCPVCRH 254 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~-----~sCPvCR~ 254 (409)
..|.||...-..+..+..=-|...||..|+.+=|... -.||.|..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3588886532222222222399999999999766442 26999965
No 121
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=58.56 E-value=5.7 Score=31.17 Aligned_cols=31 Identities=16% Similarity=0.377 Sum_probs=25.0
Q ss_pred eecccCCcceeeccCCCCccCCCCCCCceeeccc
Q 039088 10 YWCYRCSRFVRVFSRDDVVSCPDCDGGFVEEIEN 43 (409)
Q Consensus 10 ywCh~C~r~V~~~~~~~~~~CP~C~~GFiEEi~~ 43 (409)
+.||.|-..... ..-.+||.|+..=|..+.-
T Consensus 16 LrC~aCf~~t~~---~~k~FCp~CGn~TL~Rvsv 46 (79)
T 2con_A 16 LRCHGCFKTTSD---MNRVFCGHCGNKTLKKVSV 46 (79)
T ss_dssp EECSSSCCEESC---SSCCSCSSSCCSCCEEEEC
T ss_pred eEecccceECCC---cccccccccCcccceEEEE
Confidence 569999998733 3679999999999888753
No 122
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=58.32 E-value=4.6 Score=33.36 Aligned_cols=44 Identities=23% Similarity=0.433 Sum_probs=27.2
Q ss_pred ccccccccccc----cC---CCceeecccceeChhhhHHHhh------c-CCCCCCCC
Q 039088 210 SHCAVCKEAFE----LG---SEAREMPCKHIYHSDCILPWLS------L-RNSCPVCR 253 (409)
Q Consensus 210 ~~C~ICle~f~----~g---~~~~~lPC~H~FH~~CI~~WL~------~-~~sCPvCR 253 (409)
..|.||+..-. .+ +.+.-..|...||..||..++. . .-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 46999987541 12 2222234899999999987632 1 23677664
No 123
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=58.07 E-value=8.4 Score=32.89 Aligned_cols=44 Identities=23% Similarity=0.594 Sum_probs=29.2
Q ss_pred ccCccccccccccccCCCceee-cccceeChhhhHHHh------hc-----CCCCCCCCc
Q 039088 207 ELESHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWL------SL-----RNSCPVCRH 254 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL------~~-----~~sCPvCR~ 254 (409)
..+..|.||.+. .++..- .|-..||..||.+-| +. .-.|++|..
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345789999764 122221 389999999999753 21 238999954
No 124
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.93 E-value=5.3 Score=29.84 Aligned_cols=41 Identities=20% Similarity=0.525 Sum_probs=31.1
Q ss_pred CccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
...|+.|.+.+..++.+ ..-+..||..|.. |-.|+..|...
T Consensus 9 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF~--------C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKV--SSLGKDWHKFCLK--------CERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEE--EETTEEEETTTCB--------CSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEE--EECCeEeeCCCCC--------CCCCCCccCCC
Confidence 36899999988765543 3468899998864 99999988643
No 125
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.39 E-value=2.6 Score=32.21 Aligned_cols=45 Identities=20% Similarity=0.408 Sum_probs=28.8
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHh---------hcCCCCCCCCcc
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWL---------SLRNSCPVCRHE 255 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL---------~~~~sCPvCR~~ 255 (409)
..| ||...+..+.-+.---|...||..|+.--. ..+-.||.|+..
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 456 898876522222222399999999995322 135689999754
No 126
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=55.41 E-value=1.4 Score=32.83 Aligned_cols=49 Identities=20% Similarity=0.424 Sum_probs=34.7
Q ss_pred cccCcccccccc-ccccCCCceeecccceeChhhhHHHhhcCC----CCCCCCc
Q 039088 206 VELESHCAVCKE-AFELGSEAREMPCKHIYHSDCILPWLSLRN----SCPVCRH 254 (409)
Q Consensus 206 ~~~~~~C~ICle-~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~----sCPvCR~ 254 (409)
......|.||+. .|.++-.-.-..|+-.||..|-..|-...+ .|-+||+
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 345578999998 577666555556899999999888753333 5777764
No 127
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=54.99 E-value=6.7 Score=39.09 Aligned_cols=49 Identities=20% Similarity=0.510 Sum_probs=31.7
Q ss_pred CccccccccccccCCCceeecccce--eChhhhHHHhhcC--CCCCCCCccCCCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHI--YHSDCILPWLSLR--NSCPVCRHELPAD 259 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~--FH~~CI~~WL~~~--~sCPvCR~~l~~~ 259 (409)
...|+|-+..++. .++-..|.|. |-..-+....... -.||+|.+.+...
T Consensus 215 SL~CPlS~~ri~~--P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 215 SLMCPLGKMRLTI--PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp ESBCTTTCSBCSS--EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeeCCCccceecc--CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 3679988776663 5666679998 4443333333333 3899999877544
No 128
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=54.48 E-value=2.1 Score=36.24 Aligned_cols=47 Identities=17% Similarity=0.365 Sum_probs=32.0
Q ss_pred ccccccccccccCCCceee-cccceeChhhhHHHhhcCCCCCCCCccC
Q 039088 210 SHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLSLRNSCPVCRHEL 256 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~~~~sCPvCR~~l 256 (409)
..|.+|...|..-..-... .||.+||..|....+.....|-.|...+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 5799999998753322333 3999999999888776677888885543
No 129
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=54.11 E-value=4.9 Score=30.05 Aligned_cols=38 Identities=18% Similarity=0.576 Sum_probs=21.5
Q ss_pred cccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCC
Q 039088 211 HCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 211 ~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
.|+.|.+.+..++.+.. -+..||..|.. |-.|+..|..
T Consensus 2 ~C~~C~~~I~~~~~v~a--~~~~~H~~CF~--------C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS--LGKDWHRPCLK--------CEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEEE--TTEEEETTTCB--------CTTTCCBCCT
T ss_pred cCCCCCCEEECceEEEE--CCccccCCCCC--------ccccCccCCC
Confidence 46667666554433222 36667776653 6677666643
No 130
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=53.91 E-value=8.2 Score=38.63 Aligned_cols=48 Identities=21% Similarity=0.492 Sum_probs=30.8
Q ss_pred ccccccccccccCCCceeecccceeChh--hhHHHhhcC--CCCCCCCccCCCC
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSD--CILPWLSLR--NSCPVCRHELPAD 259 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~--CI~~WL~~~--~sCPvCR~~l~~~ 259 (409)
..|+|-+..+.. .++-..|.|.-|.+ -+....... -.||+|.+.+...
T Consensus 250 L~CPlS~~ri~~--PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp SBCTTTSSBCSS--EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred ecCCCccccccc--cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHH
Confidence 679988776653 56667799984443 333332232 3799999877544
No 131
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.86 E-value=9.2 Score=29.13 Aligned_cols=39 Identities=33% Similarity=0.686 Sum_probs=30.0
Q ss_pred CccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELP 257 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 257 (409)
...|+.|.+.+..++.+.. -+..||..|.. |-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF~--------C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA--LDKQWHVSCFK--------CQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE--TTEEECTTTCB--------CSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE--CCcccccccCC--------cCcCCCCcC
Confidence 3689999998876554433 57889999864 999998885
No 132
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.51 E-value=10 Score=28.89 Aligned_cols=41 Identities=24% Similarity=0.532 Sum_probs=30.6
Q ss_pred CccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
...|+.|.+.+...+.+. .-+..||..|.. |-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF~--------C~~C~~~L~~~ 55 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--VNGHFFHRSCFR--------CHTCEATLWPG 55 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--BTTBCCBTTTCB--------CSSSCCBCCTT
T ss_pred CCCCcccCCCcccceEEE--ECCCeeCCCcCE--------EcCCCCCcCCC
Confidence 368999999886555443 357889999964 88998888554
No 133
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=52.77 E-value=3.7 Score=31.64 Aligned_cols=46 Identities=24% Similarity=0.477 Sum_probs=29.1
Q ss_pred CccccccccccccCCCceee--cccceeChhhhHHHhh---------cCCCCCCCCcc
Q 039088 209 ESHCAVCKEAFELGSEAREM--PCKHIYHSDCILPWLS---------LRNSCPVCRHE 255 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~l--PC~H~FH~~CI~~WL~---------~~~sCPvCR~~ 255 (409)
...| ||......+.-+.-= -|...||..|+.---. .+-.||.|+..
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 3567 898764433222222 5999999999963221 24589999764
No 134
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=51.99 E-value=2.4 Score=34.65 Aligned_cols=44 Identities=30% Similarity=0.519 Sum_probs=27.2
Q ss_pred cccccccccccCCCceee-cccceeChhhhHHHhhcC----CCCCCCCcc
Q 039088 211 HCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLSLR----NSCPVCRHE 255 (409)
Q Consensus 211 ~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~~~----~sCPvCR~~ 255 (409)
.|.||...-.. ..+..- .|...||..|+.+=|... -.||.|..-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57777654322 122222 389999999998766542 268888543
No 135
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=50.12 E-value=17 Score=27.95 Aligned_cols=40 Identities=18% Similarity=0.404 Sum_probs=29.8
Q ss_pred CccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
...|..|.+.+.. . .+..-+..||..|. .|-.|...|...
T Consensus 25 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVG-A--VVKARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCS-C--CEESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred CCCcccCCCEecc-c--EEEECCceECccCC--------EecCCCCCCCCC
Confidence 4689999998773 2 23346789999986 499999888543
No 136
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=49.19 E-value=13 Score=30.59 Aligned_cols=47 Identities=26% Similarity=0.487 Sum_probs=29.4
Q ss_pred ccCccccccccccccCCCceee---cccceeChhhhHHHhhcCC----CCCCCCccCCCC
Q 039088 207 ELESHCAVCKEAFELGSEAREM---PCKHIYHSDCILPWLSLRN----SCPVCRHELPAD 259 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~l---PC~H~FH~~CI~~WL~~~~----sCPvCR~~l~~~ 259 (409)
..+..|.||.+. + +++.- .|-..||..|+. |.... .||.|.-.+...
T Consensus 13 ~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 345789999842 2 22222 377899999997 54422 588776544433
No 137
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=48.80 E-value=3.9 Score=30.86 Aligned_cols=44 Identities=27% Similarity=0.505 Sum_probs=27.7
Q ss_pred CccccccccccccCCCceee-cccceeChhhhHHHhh---cCCCCCCCCc
Q 039088 209 ESHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLS---LRNSCPVCRH 254 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~---~~~sCPvCR~ 254 (409)
...| ||...+. +...+.. -|...||..|+.--.. ..-.||.|+.
T Consensus 19 ~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3568 9987654 3222222 3999999999964322 2337888854
No 138
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=46.63 E-value=13 Score=29.32 Aligned_cols=47 Identities=19% Similarity=0.521 Sum_probs=32.7
Q ss_pred ccccccccccccCCCceeec-ccceeChhhhHHHhhc------CCCCCCCCccC
Q 039088 210 SHCAVCKEAFELGSEAREMP-CKHIYHSDCILPWLSL------RNSCPVCRHEL 256 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lP-C~H~FH~~CI~~WL~~------~~sCPvCR~~l 256 (409)
..|.+|...|..-..-.... |+++||..|...++.. ...|-.|...|
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 57999999998644333333 9999999998876532 23576775544
No 139
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.57 E-value=16 Score=26.65 Aligned_cols=41 Identities=27% Similarity=0.532 Sum_probs=29.3
Q ss_pred cccccccccccc-CCCceeecccceeChhhhHHHhhcCCCCCCCCccCCC
Q 039088 210 SHCAVCKEAFEL-GSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 210 ~~C~ICle~f~~-g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
..|..|.+.+.. ++...+..-+..||..|. .|-.|...|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccC--------EeccCCCcCCC
Confidence 579999998774 122223336889999987 49999988853
No 140
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=46.49 E-value=11 Score=29.79 Aligned_cols=37 Identities=19% Similarity=0.357 Sum_probs=28.7
Q ss_pred CccccccccccccCCCceeec--ccceeChhhhHHHhhcC
Q 039088 209 ESHCAVCKEAFELGSEAREMP--CKHIYHSDCILPWLSLR 246 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lP--C~H~FH~~CI~~WL~~~ 246 (409)
...|.+|.+.++.. .-++.| =.|.||..|-+..++.+
T Consensus 15 ~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 15 PLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp SCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHHH
T ss_pred eeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHhc
Confidence 47899999998853 334444 48999999999998763
No 141
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=46.29 E-value=13 Score=28.05 Aligned_cols=33 Identities=15% Similarity=0.428 Sum_probs=24.3
Q ss_pred ccccccccccccCCCceeec-ccceeChhhhHHH
Q 039088 210 SHCAVCKEAFELGSEAREMP-CKHIYHSDCILPW 242 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lP-C~H~FH~~CI~~W 242 (409)
..|.+|...|..-..-.... ||++|+..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 58999999998543333333 9999999997644
No 142
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=45.84 E-value=12 Score=31.46 Aligned_cols=33 Identities=18% Similarity=0.584 Sum_probs=24.9
Q ss_pred ccccccccccccCCCceeec-ccceeChhhhHHH
Q 039088 210 SHCAVCKEAFELGSEAREMP-CKHIYHSDCILPW 242 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lP-C~H~FH~~CI~~W 242 (409)
..|.+|...|..-..-.... ||++||..|....
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 57999999998644333333 9999999997654
No 143
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=45.60 E-value=14 Score=28.68 Aligned_cols=48 Identities=19% Similarity=0.435 Sum_probs=32.1
Q ss_pred CccccccccccccCCCceeec-ccceeChhhhHHHhhc--------CCCCCCCCccC
Q 039088 209 ESHCAVCKEAFELGSEAREMP-CKHIYHSDCILPWLSL--------RNSCPVCRHEL 256 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lP-C~H~FH~~CI~~WL~~--------~~sCPvCR~~l 256 (409)
...|.+|...|..-..-.... |+++||..|....+.. ...|-.|...|
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l 77 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLAL 77 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHH
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHH
Confidence 368999999998654333333 9999999998765321 22566665544
No 144
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=44.84 E-value=3.1 Score=31.22 Aligned_cols=43 Identities=23% Similarity=0.474 Sum_probs=25.9
Q ss_pred ccccccccccccCCCceee---cccceeChhhhHHHh---h-----cCCCCCCCCc
Q 039088 210 SHCAVCKEAFELGSEAREM---PCKHIYHSDCILPWL---S-----LRNSCPVCRH 254 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~l---PC~H~FH~~CI~~WL---~-----~~~sCPvCR~ 254 (409)
..| ||......+. .+.. -|...||..|+.--- . .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 456 8966544433 2333 288899999984210 1 1347999974
No 145
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=44.53 E-value=14 Score=26.00 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=26.4
Q ss_pred CCCceecccCCccee-------eccCCCCccCCCCCCCceeecc
Q 039088 6 SSSSYWCYRCSRFVR-------VFSRDDVVSCPDCDGGFVEEIE 42 (409)
Q Consensus 6 ~~~~ywCh~C~r~V~-------~~~~~~~~~CP~C~~GFiEEi~ 42 (409)
....|-|..|..... +......+.|+.|+..|...-.
T Consensus 11 ~~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~~ 54 (62)
T 1vd4_A 11 NRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDES 54 (62)
T ss_dssp SSSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECTT
T ss_pred CCCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccCcc
Confidence 346799999998532 1223456899999999987653
No 146
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.47 E-value=12 Score=34.25 Aligned_cols=35 Identities=14% Similarity=0.483 Sum_probs=26.3
Q ss_pred CccccccccccccCCCceeec-ccceeChhhhHHHh
Q 039088 209 ESHCAVCKEAFELGSEAREMP-CKHIYHSDCILPWL 243 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lP-C~H~FH~~CI~~WL 243 (409)
+..|.+|...|..-..-.... ||++||..|.....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCee
Confidence 478999999998554334444 99999999976543
No 147
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=44.43 E-value=4 Score=29.94 Aligned_cols=42 Identities=24% Similarity=0.580 Sum_probs=24.8
Q ss_pred CccccccccccccCCCceeec--cc-ceeChhhhHHHhhc----CCCCCCCCc
Q 039088 209 ESHCAVCKEAFELGSEAREMP--CK-HIYHSDCILPWLSL----RNSCPVCRH 254 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lP--C~-H~FH~~CI~~WL~~----~~sCPvCR~ 254 (409)
..-| ||.+... ++-+.-=. |. ..||..|+. |.. +-.||.|+.
T Consensus 9 ~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3556 9987532 22111112 55 699999998 433 237998854
No 148
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.60 E-value=19 Score=26.23 Aligned_cols=39 Identities=26% Similarity=0.624 Sum_probs=27.6
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCC
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELP 257 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 257 (409)
..|..|.+.+...+. .+..=+..||..|. .|-.|...|.
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGA-GVVALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSC-CEECSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCccCCCccCCCce-EEEECCCeEcccCC--------cccccCCcCC
Confidence 579999887764322 22335788999886 4889988884
No 149
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=43.10 E-value=11 Score=28.35 Aligned_cols=40 Identities=28% Similarity=0.601 Sum_probs=30.4
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
..|..|.+.+..++. +..-+..||..|.. |-.|...|...
T Consensus 8 ~~C~~C~~~I~~~~~--~~a~~~~~H~~CF~--------C~~C~~~L~~~ 47 (81)
T 1a7i_A 8 NKCGACGRTVYHAEE--VQCDGRSFHRCCFL--------CMVCRKNLDST 47 (81)
T ss_dssp CBCSSSCCBCSSTTE--EEETTEEEESSSEE--------CSSSCCEECSS
T ss_pred CcCcCcCccccCcee--EEeCCcccccccCc--------cCCCCCCCCCC
Confidence 679999998865553 33468899999874 88999888544
No 150
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.00 E-value=17 Score=26.94 Aligned_cols=40 Identities=23% Similarity=0.427 Sum_probs=28.7
Q ss_pred cccccccccccc-CCCceeecccceeChhhhHHHhhcCCCCCCCCccCC
Q 039088 210 SHCAVCKEAFEL-GSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELP 257 (409)
Q Consensus 210 ~~C~ICle~f~~-g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 257 (409)
..|+.|.+.+.. ++...+..-+..||..|.. |-.|...|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~--------C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFN--------CGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGCB--------CTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccCC--------hhhCCCcCC
Confidence 579999998774 1222334467889999864 889988885
No 151
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=42.80 E-value=4.5 Score=33.44 Aligned_cols=46 Identities=24% Similarity=0.428 Sum_probs=28.8
Q ss_pred cccccccccccCCCceeecccceeChhhhHHHhhcCC----CCCCCCccC
Q 039088 211 HCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRN----SCPVCRHEL 256 (409)
Q Consensus 211 ~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~----sCPvCR~~l 256 (409)
.|.||...-..++.+.--.|...||..|+.+=|.... .||.|...+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 5888876432222222223999999999997654422 588886543
No 152
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=42.73 E-value=16 Score=28.31 Aligned_cols=34 Identities=26% Similarity=0.703 Sum_probs=25.4
Q ss_pred ccccccccccccCCCceeec-ccceeChhhhHHHh
Q 039088 210 SHCAVCKEAFELGSEAREMP-CKHIYHSDCILPWL 243 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lP-C~H~FH~~CI~~WL 243 (409)
..|.+|...|..-..-.... ||++||..|....+
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~ 54 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNEL 54 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEE
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhCCee
Confidence 57999999998544333333 99999999987653
No 153
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=42.54 E-value=16 Score=28.84 Aligned_cols=51 Identities=22% Similarity=0.409 Sum_probs=34.8
Q ss_pred CccccccccccccCCCceee-cccceeChhhhHHHhh-------cCCCCCCCCccCCCC
Q 039088 209 ESHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLS-------LRNSCPVCRHELPAD 259 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~-------~~~sCPvCR~~l~~~ 259 (409)
...|.+|...|..-..-... .|+++||..|....+. ....|-.|...|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~ 67 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRG 67 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHC
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhc
Confidence 36899999999864332333 3999999999876532 223688887666443
No 154
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=42.39 E-value=4.3 Score=29.79 Aligned_cols=42 Identities=24% Similarity=0.597 Sum_probs=24.2
Q ss_pred CccccccccccccCCCceeec--cc-ceeChhhhHHHhhc----CCCCCCCCc
Q 039088 209 ESHCAVCKEAFELGSEAREMP--CK-HIYHSDCILPWLSL----RNSCPVCRH 254 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lP--C~-H~FH~~CI~~WL~~----~~sCPvCR~ 254 (409)
...| ||..... +.-+.-=. |. ..||..|+. |.. +-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456 8987532 22111112 54 689999998 433 237888854
No 155
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=41.98 E-value=13 Score=31.85 Aligned_cols=47 Identities=26% Similarity=0.451 Sum_probs=29.9
Q ss_pred cCccccccccccc-cCC-CceeecccceeChhhhHHHhhcC----CCCCCCCc
Q 039088 208 LESHCAVCKEAFE-LGS-EAREMPCKHIYHSDCILPWLSLR----NSCPVCRH 254 (409)
Q Consensus 208 ~~~~C~ICle~f~-~g~-~~~~lPC~H~FH~~CI~~WL~~~----~sCPvCR~ 254 (409)
.+..|.+|...|. ... .....-|+|.+|..|-..-.... -.|=+|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 4578999999984 222 33333499999999976431111 14777765
No 156
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.21 E-value=19 Score=27.01 Aligned_cols=41 Identities=22% Similarity=0.593 Sum_probs=29.9
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
..|+.|.+.+..++.+ +..=+..||..|. +|-.|+..|...
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQN-VEYKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCE-EECSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceE-EEECccccccccC--------chhhCCCccCCC
Confidence 5899999988765543 2335788999886 488998887543
No 157
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.72 E-value=17 Score=28.23 Aligned_cols=32 Identities=22% Similarity=0.545 Sum_probs=23.6
Q ss_pred ccccccccccccCCCceeec-ccceeChhhhHH
Q 039088 210 SHCAVCKEAFELGSEAREMP-CKHIYHSDCILP 241 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lP-C~H~FH~~CI~~ 241 (409)
..|.+|...|..-..-.... |+.+||..|...
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 58999999997543333333 999999999654
No 158
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.52 E-value=20 Score=27.62 Aligned_cols=39 Identities=18% Similarity=0.544 Sum_probs=29.4
Q ss_pred CccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
...|+.|.+.+. ++ .+..-+..||..|. .|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~-~~--~v~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GP--FLVALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SC--EEEETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCccCCCEec-ce--EEEECCccccccCC--------ccCCCCCCCCC
Confidence 368999999874 22 33346889999987 49999998864
No 159
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=40.36 E-value=14 Score=33.96 Aligned_cols=49 Identities=18% Similarity=0.556 Sum_probs=33.3
Q ss_pred CccccccccccccCCCceeec-ccceeChhhhHHHhhc--------CCCCCCCCccCC
Q 039088 209 ESHCAVCKEAFELGSEAREMP-CKHIYHSDCILPWLSL--------RNSCPVCRHELP 257 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lP-C~H~FH~~CI~~WL~~--------~~sCPvCR~~l~ 257 (409)
+..|.+|...|..-..-.... ||++||..|....+.. ...|-.|...|.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 468999999998654333343 9999999998765321 235777755443
No 160
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.86 E-value=19 Score=26.16 Aligned_cols=41 Identities=22% Similarity=0.520 Sum_probs=29.1
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
..|+.|.+.+...+.+ +..-+..||..|. .|-.|...|...
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRK-MEYKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCE-EEETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceE-EEECcCeecccCC--------cccccCCccCCC
Confidence 5799999988754432 2235778998886 488998887543
No 161
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.54 E-value=17 Score=26.44 Aligned_cols=40 Identities=28% Similarity=0.568 Sum_probs=28.9
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCC
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
..|..|.+.+...+.+ +..-+..||..|. +|-.|...|..
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCccCCCccccCccE-EEECccccCcccC--------eECCCCCcCCC
Confidence 5799999987754332 2335788999886 48899888754
No 162
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=37.06 E-value=12 Score=27.69 Aligned_cols=42 Identities=21% Similarity=0.513 Sum_probs=28.7
Q ss_pred ccccccccccccCCCceeec-ccceeChhhhHHHhhcCCCCCCC
Q 039088 210 SHCAVCKEAFELGSEAREMP-CKHIYHSDCILPWLSLRNSCPVC 252 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lP-C~H~FH~~CI~~WL~~~~sCPvC 252 (409)
..|--|+..|.... ...-+ |++.|+.+|=.---+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 46999999885321 13344 99999999965433444579988
No 163
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.96 E-value=18 Score=29.86 Aligned_cols=32 Identities=22% Similarity=0.580 Sum_probs=22.5
Q ss_pred CceecccCCcceeeccCCCCccCCCCCCCceee
Q 039088 8 SSYWCYRCSRFVRVFSRDDVVSCPDCDGGFVEE 40 (409)
Q Consensus 8 ~~ywCh~C~r~V~~~~~~~~~~CP~C~~GFiEE 40 (409)
..|-|-.|.-... ........||.|.+..||+
T Consensus 66 ~p~~C~~CG~~F~-~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 66 KPAQCRKCGFVFK-AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp CCCBBTTTCCBCC-CCSSCCSSCSSSCCCCBCC
T ss_pred ECcChhhCcCeec-ccCCCCCCCcCCCCCccCC
Confidence 4577888877652 1133458899999998885
No 164
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=36.81 E-value=7.3 Score=38.71 Aligned_cols=48 Identities=25% Similarity=0.436 Sum_probs=0.0
Q ss_pred CccccccccccccCCCceee-cccceeChhhhHHHhhc-------CCCCCCCCccC
Q 039088 209 ESHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLSL-------RNSCPVCRHEL 256 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~~-------~~sCPvCR~~l 256 (409)
...|.+|...|..-..-... .||++||..|...++.. ...|-.|...|
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 36899999998754332233 39999999999776522 33677776554
No 165
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.40 E-value=31 Score=25.31 Aligned_cols=42 Identities=24% Similarity=0.673 Sum_probs=29.9
Q ss_pred CccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
...|+.|.+.+...+.+. ..-+..||..|. .|-.|...|...
T Consensus 11 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIV-NSNGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCE-EETTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEE-EeCccEeccccC--------eECCCCCCCCCC
Confidence 368999999887544432 235778999886 488998877543
No 166
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.97 E-value=28 Score=26.02 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=28.9
Q ss_pred CccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELP 257 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 257 (409)
...|..|.+.+.. . .+..-+..||..|. .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 3689999998774 2 33446889999997 4999988874
No 167
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=35.62 E-value=21 Score=31.18 Aligned_cols=46 Identities=24% Similarity=0.481 Sum_probs=30.9
Q ss_pred cCccccccccccccC--CCceeecccceeChhhhHHHhhcCC--CCCCCCc
Q 039088 208 LESHCAVCKEAFELG--SEAREMPCKHIYHSDCILPWLSLRN--SCPVCRH 254 (409)
Q Consensus 208 ~~~~C~ICle~f~~g--~~~~~lPC~H~FH~~CI~~WL~~~~--sCPvCR~ 254 (409)
.+..|++|...|..- ......-|+|.+|..|-. |+.... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 457999999987543 333444599999999983 443322 5777754
No 168
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=35.52 E-value=17 Score=29.77 Aligned_cols=38 Identities=21% Similarity=0.614 Sum_probs=26.5
Q ss_pred cccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCC
Q 039088 211 HCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELP 257 (409)
Q Consensus 211 ~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 257 (409)
.|+.|.+.+...+.++. .-++.||..|.. |-.|...|.
T Consensus 10 ~C~~C~~~I~~~e~~~~-a~~~~~H~~CF~--------C~~C~~~L~ 47 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR-VKDKVYHLECFK--------CAACQKHFS 47 (123)
T ss_dssp CCSSSSCCCCTTCCCCC-CSSCCCCTTTCB--------CTTTCCBCC
T ss_pred cccCCCCeecCCceEEE-ECCcccccccCc--------cccCCCCCC
Confidence 69999887775443322 247788988863 888888873
No 169
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=34.96 E-value=11 Score=39.03 Aligned_cols=45 Identities=24% Similarity=0.537 Sum_probs=28.6
Q ss_pred ccccccccccccCCCceee-cccceeChhhhHHHhh-----cCCCCCCCCcc
Q 039088 210 SHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLS-----LRNSCPVCRHE 255 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~-----~~~sCPvCR~~ 255 (409)
..| ||...+..+...+.. -|.-.||..|+.---. .+-.||.|+..
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 345 998876433333333 3999999999953222 23489999754
No 170
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.97 E-value=31 Score=25.86 Aligned_cols=40 Identities=28% Similarity=0.575 Sum_probs=29.3
Q ss_pred CccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
...|+-|.+.+. +..+ ..-+..||..|. +|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IFKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CCSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceEE--EECcceeCCCCC--------EeCCCCCccCCC
Confidence 368999999877 3332 335788998886 499999888643
No 171
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.83 E-value=33 Score=24.70 Aligned_cols=38 Identities=26% Similarity=0.705 Sum_probs=28.1
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCC
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
..|+.|.+.+.. + .+..-+..||..|.. |-.|+..|..
T Consensus 6 ~~C~~C~~~I~~-~--~~~a~~~~~H~~CF~--------C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITT-G--GVTYREQPWHKECFV--------CTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCS-S--EEESSSSEEETTTSB--------CSSSCCBCTT
T ss_pred CCCcccCCeecc-c--eEEECccccCCCCCc--------cCCCCCcCCc
Confidence 579999998763 2 234468899998864 8999988853
No 172
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=32.15 E-value=29 Score=26.72 Aligned_cols=38 Identities=18% Similarity=0.366 Sum_probs=26.5
Q ss_pred CCCCCCceecccCCcceee----------ccCCCCccCCCCCCCceee
Q 039088 3 SIVSSSSYWCYRCSRFVRV----------FSRDDVVSCPDCDGGFVEE 40 (409)
Q Consensus 3 ~~~~~~~ywCh~C~r~V~~----------~~~~~~~~CP~C~~GFiEE 40 (409)
..+....|-|-.|.....- -..+..+.|+.|+..|...
T Consensus 22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~ 69 (85)
T 2lv2_A 22 LSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSS 69 (85)
T ss_dssp SCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSH
T ss_pred CCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCH
Confidence 3455678999999886532 1134568999999999654
No 173
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=31.95 E-value=16 Score=29.89 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=14.9
Q ss_pred CCCCCCCceecccCCccee
Q 039088 2 SSIVSSSSYWCYRCSRFVR 20 (409)
Q Consensus 2 ~~~~~~~~ywCh~C~r~V~ 20 (409)
|.++.....|||.|+.+|.
T Consensus 68 S~~~~~~~vwcY~cd~~V~ 86 (102)
T 2ida_A 68 GYDPPEGWGWCYVDEVMFD 86 (102)
T ss_dssp ESSSCSCEEEETTTTEEEE
T ss_pred EEecCCCCEEEcCCCcEEE
Confidence 3455668899999999983
No 174
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.91 E-value=30 Score=25.00 Aligned_cols=39 Identities=26% Similarity=0.597 Sum_probs=28.4
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
..|..|.+.+. +.. +..-+..||.+|. .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~-~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFII-GRV--IKAMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCC-SCC--EEETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CcCccCCCEec-ceE--EEECcccccccCC--------EeCCCCCcCCCC
Confidence 57999998876 222 3345788999887 488998888654
No 175
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=31.83 E-value=23 Score=26.67 Aligned_cols=29 Identities=24% Similarity=0.666 Sum_probs=23.2
Q ss_pred CceecccCCcceeeccCCCCccCCCCCCCceeec
Q 039088 8 SSYWCYRCSRFVRVFSRDDVVSCPDCDGGFVEEI 41 (409)
Q Consensus 8 ~~ywCh~C~r~V~~~~~~~~~~CP~C~~GFiEEi 41 (409)
....|..|++.|.+. -+.| +|++-|=-+.
T Consensus 14 ~~~rC~~C~kkvgl~----~f~C-rCg~~FC~~H 42 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM----GFKC-KCGSTFCGSH 42 (64)
T ss_dssp CSCSCTTTCCCCTTS----CEEC-TTSCEECSSS
T ss_pred cCCcChhhCCccccc----CeEe-ecCCEecccC
Confidence 456899999998543 5899 9999997654
No 176
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.71 E-value=27 Score=26.89 Aligned_cols=41 Identities=17% Similarity=0.567 Sum_probs=30.9
Q ss_pred CccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
...|+.|.+.+...+. +..-+..||..|.. |-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~~--v~a~~~~~H~~CF~--------C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMER--LLANQQVFHISCFR--------CSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSE--EECSSSEEETTTCB--------CTTTCCBCCTT
T ss_pred CCcCccCCCccCCcee--EEECCCEECCCCCe--------eCCCCCCCCCC
Confidence 3689999998875443 34578899999864 88998888654
No 177
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=30.64 E-value=23 Score=25.47 Aligned_cols=42 Identities=24% Similarity=0.698 Sum_probs=30.0
Q ss_pred CccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
...|+.|.+.+...+.+.. .=+..||..|. .|-.|...|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 3589999998875554332 35778999887 488998887543
No 178
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=30.52 E-value=28 Score=24.85 Aligned_cols=38 Identities=18% Similarity=0.526 Sum_probs=28.4
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCC
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
..|+.|.+.+. ++ .+..-+..||..|. .|-.|...|..
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCcC--------EECCCCCCCCC
Confidence 57999999887 33 23446788999886 49999988854
No 179
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=30.23 E-value=10 Score=26.78 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=23.9
Q ss_pred ccccccccCCCcee-ecccceeChhhhHHHhh---cCCCCCCCCc
Q 039088 214 VCKEAFELGSEARE-MPCKHIYHSDCILPWLS---LRNSCPVCRH 254 (409)
Q Consensus 214 ICle~f~~g~~~~~-lPC~H~FH~~CI~~WL~---~~~sCPvCR~ 254 (409)
||..... +...+. -.|...||..|+.--.. .+-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766543 222222 23899999999964322 2347888864
No 180
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=29.85 E-value=27 Score=26.25 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=24.3
Q ss_pred CCCceecccCCcceeeccCCCCccCCCCCCCceeec
Q 039088 6 SSSSYWCYRCSRFVRVFSRDDVVSCPDCDGGFVEEI 41 (409)
Q Consensus 6 ~~~~ywCh~C~r~V~~~~~~~~~~CP~C~~GFiEEi 41 (409)
......|..|++.|.+. -+.| +|+.-|=-+.
T Consensus 12 k~~~~rC~~C~kkvgl~----~f~C-rCg~~FC~~H 42 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGLT----GFMC-RCGTTFCGSH 42 (64)
T ss_dssp CSSCCCCTTTCCCCCTT----CEEC-SSSCEECTTT
T ss_pred CCcCCcChhhCCccCcc----CEEe-ecCCEecccc
Confidence 34678899999998543 5899 8999997654
No 181
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=29.78 E-value=26 Score=29.02 Aligned_cols=38 Identities=24% Similarity=0.522 Sum_probs=28.9
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCC
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELP 257 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 257 (409)
..|+-|.+.+... .++..-+..||..|.. |-.|+..|.
T Consensus 62 ~~C~~C~~~I~~~--~~v~a~~~~wH~~CF~--------C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADR--FLLYAMDSYWHSRCLK--------CSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSS--SEEEETTEEEETTTSB--------CTTTCCBGG
T ss_pred CcCcCCCCCcCCc--EEEEeCCcEEcccccC--------cCcCCCccc
Confidence 6899999987742 2333468899999964 999999885
No 182
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=29.34 E-value=19 Score=22.70 Aligned_cols=28 Identities=18% Similarity=0.477 Sum_probs=19.6
Q ss_pred ccccccccccccCCCceeecccceeChhhh
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCI 239 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI 239 (409)
..|+.|-..+-..+.+. .=+..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--ECCeEecccCC
Confidence 57999988765544333 35788999884
No 183
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=28.87 E-value=27 Score=25.60 Aligned_cols=36 Identities=25% Similarity=0.597 Sum_probs=25.3
Q ss_pred ccccccccccccCCCceee--c---ccceeChhhhHHHhhc
Q 039088 210 SHCAVCKEAFELGSEAREM--P---CKHIYHSDCILPWLSL 245 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~l--P---C~H~FH~~CI~~WL~~ 245 (409)
..|+-|.-.++..+.-..| . |++.|+..|..+|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 5788888877765533222 2 7889999999988644
No 184
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.82 E-value=37 Score=24.43 Aligned_cols=38 Identities=26% Similarity=0.617 Sum_probs=28.0
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCC
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
..|+.|.+.+.. +. +..-+..||..|. .|-.|...|..
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (69)
T 2cur_A 6 SGCVKCNKAITS-GG--ITYQDQPWHADCF--------VCVTCSKKLAG 43 (69)
T ss_dssp CCCSSSCCCCCT-TC--EEETTEEECTTTT--------BCTTTCCBCTT
T ss_pred CCCcccCCEeCc-ce--EEECccccccCcC--------EECCCCCCCCC
Confidence 579999988763 32 3346788999886 48999988853
No 185
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.46 E-value=42 Score=24.82 Aligned_cols=38 Identities=21% Similarity=0.601 Sum_probs=28.2
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCC
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
..|+.|.+.+.. + .+..=+..||..|. .|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~-~--~v~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 2cuq_A 16 PRCARCSKTLTQ-G--GVTYRDQPWHRECL--------VCTGCQTPLAG 53 (80)
T ss_dssp CCCTTTCCCCCS-C--CEESSSSEECTTTC--------BCSSSCCBCTT
T ss_pred CcCCCCCCEecC-c--EEEECCchhhhhhC--------CcccCCCcCCC
Confidence 579999988764 2 23346788999886 48899988853
No 186
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=28.05 E-value=52 Score=21.99 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=23.3
Q ss_pred CCCCceecccCCccee-----------eccCCCCccCCCCCCCce
Q 039088 5 VSSSSYWCYRCSRFVR-----------VFSRDDVVSCPDCDGGFV 38 (409)
Q Consensus 5 ~~~~~ywCh~C~r~V~-----------~~~~~~~~~CP~C~~GFi 38 (409)
+....|-|-.|..... +-.....+.|+.|+..|-
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 8 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp CSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 3457799999987542 111335689999999884
No 187
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.94 E-value=33 Score=24.14 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=26.9
Q ss_pred CCCCCCceecccCCcceee----------ccCCCCccCCCCCCCceee
Q 039088 3 SIVSSSSYWCYRCSRFVRV----------FSRDDVVSCPDCDGGFVEE 40 (409)
Q Consensus 3 ~~~~~~~ywCh~C~r~V~~----------~~~~~~~~CP~C~~GFiEE 40 (409)
+......|-|..|.+.... -.....+.|+.|+..|...
T Consensus 3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~ 50 (70)
T 1x5w_A 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQP 50 (70)
T ss_dssp SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSH
T ss_pred CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCH
Confidence 4455688999999986431 1133458999999999754
No 188
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=27.90 E-value=18 Score=27.59 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=13.5
Q ss_pred cccCCcceeeccCCCCccCCCCCCCc
Q 039088 12 CYRCSRFVRVFSRDDVVSCPDCDGGF 37 (409)
Q Consensus 12 Ch~C~r~V~~~~~~~~~~CP~C~~GF 37 (409)
|-.|...+........++|+.|+--|
T Consensus 11 CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 11 CPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred CCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 55566555443233456666665444
No 189
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=27.63 E-value=17 Score=27.56 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=14.2
Q ss_pred cccCCcceeeccCCCCccCCCCCCCc
Q 039088 12 CYRCSRFVRVFSRDDVVSCPDCDGGF 37 (409)
Q Consensus 12 Ch~C~r~V~~~~~~~~~~CP~C~~GF 37 (409)
|-.|...+........++|+.|+--|
T Consensus 11 CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 11 CPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp CTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred CCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 56666655444334556666665444
No 190
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=27.34 E-value=31 Score=28.10 Aligned_cols=29 Identities=14% Similarity=0.362 Sum_probs=15.2
Q ss_pred ecccCCcceeeccCCCCccCCCCCCCceeec
Q 039088 11 WCYRCSRFVRVFSRDDVVSCPDCDGGFVEEI 41 (409)
Q Consensus 11 wCh~C~r~V~~~~~~~~~~CP~C~~GFiEEi 41 (409)
-|-.|..++... ...+.|..|+.-|..+-
T Consensus 34 ~CP~Cq~eL~~~--g~~~hC~~C~~~f~~~a 62 (101)
T 2jne_A 34 HCPQCQHVLDQD--NGHARCRSCGEFIEMKA 62 (101)
T ss_dssp BCSSSCSBEEEE--TTEEEETTTCCEEEEEE
T ss_pred cCccCCCcceec--CCEEECccccchhhccc
Confidence 466666665322 23344666666665544
No 191
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=27.20 E-value=26 Score=26.74 Aligned_cols=20 Identities=25% Similarity=0.665 Sum_probs=15.5
Q ss_pred ecccCCcceeeccCCCCccCCCCCCC
Q 039088 11 WCYRCSRFVRVFSRDDVVSCPDCDGG 36 (409)
Q Consensus 11 wCh~C~r~V~~~~~~~~~~CP~C~~G 36 (409)
=|-.|.+.| .+-.||.|++.
T Consensus 13 AC~~C~~~~------~~~~CPnC~s~ 32 (69)
T 1ryq_A 13 ACRHCHYIT------SEDRCPVCGSR 32 (69)
T ss_dssp EETTTCBEE------SSSSCTTTCCC
T ss_pred hHHhCCccc------cCCcCCCccCC
Confidence 488999966 45789999953
No 192
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=27.10 E-value=32 Score=29.31 Aligned_cols=35 Identities=20% Similarity=0.542 Sum_probs=24.5
Q ss_pred CCceecccCCcceeeccCC----CCccCCCCCCCceeeccc
Q 039088 7 SSSYWCYRCSRFVRVFSRD----DVVSCPDCDGGFVEEIEN 43 (409)
Q Consensus 7 ~~~ywCh~C~r~V~~~~~~----~~~~CP~C~~GFiEEi~~ 43 (409)
...-||-.|.-...+.... -.+.|+.|+ |+|+++.
T Consensus 22 ~~~~FCPeCgNmL~pked~~~~~l~~~CrtCg--Y~~~~~~ 60 (133)
T 3qt1_I 22 TTFRFCRDCNNMLYPREDKENNRLLFECRTCS--YVEEAGS 60 (133)
T ss_dssp CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSC--CBCCCSC
T ss_pred cCCeeCCCCCCEeeECccCCCceeEEECCCCC--CcEEcCC
Confidence 3567999999998665211 149999995 6777653
No 193
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=26.66 E-value=18 Score=27.52 Aligned_cols=26 Identities=8% Similarity=0.221 Sum_probs=13.2
Q ss_pred cccCCcceeeccCCCCccCCCCCCCc
Q 039088 12 CYRCSRFVRVFSRDDVVSCPDCDGGF 37 (409)
Q Consensus 12 Ch~C~r~V~~~~~~~~~~CP~C~~GF 37 (409)
|-.|...+.......+++|+.|+--|
T Consensus 11 CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 11 CPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp CTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred CCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 55555555443233455666665444
No 194
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=26.54 E-value=20 Score=29.37 Aligned_cols=13 Identities=15% Similarity=0.611 Sum_probs=11.1
Q ss_pred eeChhhhHHHhhc
Q 039088 233 IYHSDCILPWLSL 245 (409)
Q Consensus 233 ~FH~~CI~~WL~~ 245 (409)
-||..|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999854
No 195
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=26.47 E-value=18 Score=27.36 Aligned_cols=26 Identities=4% Similarity=0.041 Sum_probs=12.9
Q ss_pred cccCCcceeeccCCCCccCCCCCCCc
Q 039088 12 CYRCSRFVRVFSRDDVVSCPDCDGGF 37 (409)
Q Consensus 12 Ch~C~r~V~~~~~~~~~~CP~C~~GF 37 (409)
|-.|...+........++|+.|+--|
T Consensus 11 CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 11 CPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred CCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 55555554443233455566554444
No 196
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.35 E-value=31 Score=25.67 Aligned_cols=38 Identities=21% Similarity=0.565 Sum_probs=27.8
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCC
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
..|+.|.+.+. +.. +..-+..||..|.. |-.|...|..
T Consensus 16 ~~C~~C~~~I~-~~~--~~a~~~~~H~~CF~--------C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPF--MVAGEFKYHPECFA--------CMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SCC--BCCTTCCBCTTSCB--------CTTTCCBCCT
T ss_pred CcCccCCCCcC-ceE--EEECCceeccccCC--------ccCCCCccCC
Confidence 47999999877 332 23357889988864 8999988853
No 197
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=26.33 E-value=20 Score=29.29 Aligned_cols=13 Identities=23% Similarity=0.731 Sum_probs=11.0
Q ss_pred eeChhhhHHHhhc
Q 039088 233 IYHSDCILPWLSL 245 (409)
Q Consensus 233 ~FH~~CI~~WL~~ 245 (409)
-||..|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999863
No 198
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.21 E-value=44 Score=24.88 Aligned_cols=38 Identities=34% Similarity=0.856 Sum_probs=27.9
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCC
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
..|+.|.+.+. +. .+..-+..||..|.. |-.|+..|..
T Consensus 16 ~~C~~C~~~I~-~~--~v~a~~~~wH~~CF~--------C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GE--VVSALGKTYHPDCFV--------CAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SC--CEEETTEEECTTTSS--------CSSSCCCCCS
T ss_pred CcCccccCEec-cc--eEEECCceeCccCCc--------cccCCCCCCC
Confidence 47999999877 33 233467889998864 8899888754
No 199
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=26.09 E-value=23 Score=27.84 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=22.4
Q ss_pred CceecccCCcceeeccCCCCccCCCCCCCcee
Q 039088 8 SSYWCYRCSRFVRVFSRDDVVSCPDCDGGFVE 39 (409)
Q Consensus 8 ~~ywCh~C~r~V~~~~~~~~~~CP~C~~GFiE 39 (409)
..|-|-.|.....-.+...-..|+.|+.-|.=
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFTG 57 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEEC
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCCEecC
Confidence 57889999886433334567889999876643
No 200
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=25.59 E-value=17 Score=22.91 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=9.2
Q ss_pred CCCCCCCccCCCC
Q 039088 247 NSCPVCRHELPAD 259 (409)
Q Consensus 247 ~sCPvCR~~l~~~ 259 (409)
.+||+|+..++..
T Consensus 4 ~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 4 FCCPKCQYQAPDM 16 (28)
T ss_dssp EECTTSSCEESSH
T ss_pred ccCccccccCcCh
Confidence 3689998877643
No 201
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.18 E-value=40 Score=27.48 Aligned_cols=37 Identities=27% Similarity=0.584 Sum_probs=0.0
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccC
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHEL 256 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l 256 (409)
..|+-|.+.+.....+..+ +..||..|.. |-.|+..|
T Consensus 6 ~~C~~C~~~I~~~~~~~a~--~~~wH~~CF~--------C~~C~~~L 42 (122)
T 1m3v_A 6 KRCAGCGGKIADRFLLYAM--DSYWHSRCLK--------CSSCQAQL 42 (122)
T ss_dssp CCBSSSSSCCCSSCCEEET--TEEECHHHHC--------CSSSCCCT
T ss_pred CCCcccCCEeCCcEEEEEC--CceeHhhCCC--------cCCCCCcc
No 202
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=25.00 E-value=50 Score=25.03 Aligned_cols=33 Identities=21% Similarity=0.484 Sum_probs=21.8
Q ss_pred CCCCCCceecccCCcceeecc---------------CCCCccCCCCCC
Q 039088 3 SIVSSSSYWCYRCSRFVRVFS---------------RDDVVSCPDCDG 35 (409)
Q Consensus 3 ~~~~~~~ywCh~C~r~V~~~~---------------~~~~~~CP~C~~ 35 (409)
|+.....|-|-.|-=...... ..++.+||.|+-
T Consensus 1 m~~~m~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga 48 (70)
T 1dx8_A 1 MEIDEGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRS 48 (70)
T ss_dssp CBCCSSCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCC
T ss_pred CCCCCceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCC
Confidence 344556899999986654210 124679999996
No 203
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.59 E-value=27 Score=19.19 Aligned_cols=12 Identities=42% Similarity=1.057 Sum_probs=9.6
Q ss_pred ccCCCCCCCcee
Q 039088 28 VSCPDCDGGFVE 39 (409)
Q Consensus 28 ~~CP~C~~GFiE 39 (409)
+.|+.|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 579999988864
No 204
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.39 E-value=14 Score=28.06 Aligned_cols=32 Identities=22% Similarity=0.525 Sum_probs=23.5
Q ss_pred CceecccCCcceeeccCCCCccCCCCCCCceeec
Q 039088 8 SSYWCYRCSRFVRVFSRDDVVSCPDCDGGFVEEI 41 (409)
Q Consensus 8 ~~ywCh~C~r~V~~~~~~~~~~CP~C~~GFiEEi 41 (409)
....|..|++.|.+. ...-+.| +|+.-|=-+.
T Consensus 14 ~~~rC~~C~kk~gL~-~~egf~C-rCg~~FC~~H 45 (67)
T 1x4w_A 14 SRRRCFQCQTKLELV-QQELGSC-RCGYVFCMLH 45 (67)
T ss_dssp CTTBCSSSCCBCCHH-HHHHHCC-SSSCCCCTTT
T ss_pred cCCcchhhCCeeccc-ccCceEe-cCCCEehhcc
Confidence 567899999999654 1112799 9999997644
No 205
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=24.24 E-value=20 Score=28.59 Aligned_cols=41 Identities=22% Similarity=0.515 Sum_probs=24.4
Q ss_pred CccccccccccccCCCceee-ccc---ceeChhhhHHHhhc----CCCCCC-CCc
Q 039088 209 ESHCAVCKEAFELGSEAREM-PCK---HIYHSDCILPWLSL----RNSCPV-CRH 254 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~l-PC~---H~FH~~CI~~WL~~----~~sCPv-CR~ 254 (409)
...| ||..... ++ .+.. .|. ..||..||. |.. +-.||. |+.
T Consensus 26 ~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 26 EVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp SCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 4567 9987422 22 1111 244 689999996 322 337999 864
No 206
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=24.13 E-value=25 Score=26.58 Aligned_cols=46 Identities=22% Similarity=0.478 Sum_probs=28.6
Q ss_pred ccccccccccccCCCceee-cccceeChhhhHHHhh-----cCCCCCCCCcc
Q 039088 210 SHCAVCKEAFELGSEAREM-PCKHIYHSDCILPWLS-----LRNSCPVCRHE 255 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~l-PC~H~FH~~CI~~WL~-----~~~sCPvCR~~ 255 (409)
..-.||...+..+...+.. -|.-.||..|+.---. ..-.||.|+..
T Consensus 10 ~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 10 PVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3444898766433322222 3999999999964321 23479999764
No 207
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=24.08 E-value=35 Score=26.79 Aligned_cols=23 Identities=26% Similarity=0.687 Sum_probs=13.9
Q ss_pred ceecccCCcceeeccCCCCccCCCCCCC
Q 039088 9 SYWCYRCSRFVRVFSRDDVVSCPDCDGG 36 (409)
Q Consensus 9 ~ywCh~C~r~V~~~~~~~~~~CP~C~~G 36 (409)
.|.|-.|...+... ..||.|+.-
T Consensus 18 ~~~C~~C~~~~~~~-----afCPeCgq~ 40 (81)
T 2jrp_A 18 TAHCETCAKDFSLQ-----ALCPDCRQP 40 (81)
T ss_dssp EEECTTTCCEEEEE-----EECSSSCSC
T ss_pred ceECccccccCCCc-----ccCcchhhH
Confidence 44477777766443 377777654
No 208
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=24.06 E-value=53 Score=24.06 Aligned_cols=41 Identities=24% Similarity=0.514 Sum_probs=28.8
Q ss_pred cccccccccccc-C-CCceeecccceeChhhhHHHhhcCCCCCCCCccCCC
Q 039088 210 SHCAVCKEAFEL-G-SEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 210 ~~C~ICle~f~~-g-~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
..|+.|.+.+.. + ....+..=+..||..|. .|-.|...|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTTC--------BCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCcccC--------EehhcCCCCCC
Confidence 579999988773 1 12233335788999886 49999988853
No 209
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.83 E-value=49 Score=24.62 Aligned_cols=39 Identities=26% Similarity=0.615 Sum_probs=28.6
Q ss_pred CccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
...|+.|.+.+. +. .+..-+..||..|. +|-.|...|..
T Consensus 15 ~~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPIL-DR--ILRAMGKAYHPGCF--------TCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCC-SC--CEEETTEEECTTTC--------BCSSSCCBCTT
T ss_pred CCccccCCCeec-ce--eEEECCccccHHhc--------CcccCCCccCC
Confidence 367999998876 22 33346788999886 49999988863
No 210
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.76 E-value=38 Score=26.19 Aligned_cols=30 Identities=27% Similarity=0.566 Sum_probs=23.7
Q ss_pred CCceecccCCcceeeccCCCCccCCCCCCCceeec
Q 039088 7 SSSYWCYRCSRFVRVFSRDDVVSCPDCDGGFVEEI 41 (409)
Q Consensus 7 ~~~ywCh~C~r~V~~~~~~~~~~CP~C~~GFiEEi 41 (409)
.....|+.|++.|.+. -+.| +|+.-|=-+.
T Consensus 23 ~~~~RC~~C~kkvgL~----~f~C-rCg~~FCs~H 52 (74)
T 1wfp_A 23 STATRCLSCNKKVGVT----GFKC-RCGSTFCGTH 52 (74)
T ss_dssp CCCCBCSSSCCBCTTT----CEEC-TTSCEECTTT
T ss_pred ccCccchhhcCccccc----ceEe-ccCCEecccc
Confidence 3567899999998553 5999 8999997654
No 211
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=23.52 E-value=38 Score=25.97 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=23.0
Q ss_pred ceeccc--CCcceeeccCCCCccCC-----CCCCCcee
Q 039088 9 SYWCYR--CSRFVRVFSRDDVVSCP-----DCDGGFVE 39 (409)
Q Consensus 9 ~ywCh~--C~r~V~~~~~~~~~~CP-----~C~~GFiE 39 (409)
.-||-. |...|........++|| .|+--|-=
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~ 62 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCR 62 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEET
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeecc
Confidence 668888 98888655445678898 88887754
No 212
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=23.45 E-value=36 Score=24.32 Aligned_cols=34 Identities=24% Similarity=0.576 Sum_probs=25.6
Q ss_pred CCceecccCCcceeec----------cCCCCccCCCCCCCceee
Q 039088 7 SSSYWCYRCSRFVRVF----------SRDDVVSCPDCDGGFVEE 40 (409)
Q Consensus 7 ~~~ywCh~C~r~V~~~----------~~~~~~~CP~C~~GFiEE 40 (409)
...|-|-.|.+...-. ...-.+.|+.|+..|...
T Consensus 2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~ 45 (60)
T 4gzn_C 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQ 45 (60)
T ss_dssp CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSH
T ss_pred CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCH
Confidence 4679999999876421 134679999999999764
No 213
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=23.20 E-value=53 Score=25.39 Aligned_cols=10 Identities=20% Similarity=0.806 Sum_probs=5.0
Q ss_pred cccccccccc
Q 039088 211 HCAVCKEAFE 220 (409)
Q Consensus 211 ~C~ICle~f~ 220 (409)
.|+.|.+.+.
T Consensus 7 ~C~~C~~~I~ 16 (101)
T 2cup_A 7 GCVECRKPIG 16 (101)
T ss_dssp BCSSSCCBCC
T ss_pred cCcccCCccc
Confidence 4555555443
No 214
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=23.16 E-value=39 Score=29.82 Aligned_cols=42 Identities=19% Similarity=0.484 Sum_probs=28.4
Q ss_pred cCccccccccccccCCCceee---cccceeChhhhHHHhhc----------CCCCCCCC
Q 039088 208 LESHCAVCKEAFELGSEAREM---PCKHIYHSDCILPWLSL----------RNSCPVCR 253 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~l---PC~H~FH~~CI~~WL~~----------~~sCPvCR 253 (409)
.+..|.||-+. ..+... .|...||..||+.++-. .-.|=+|.
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 35689998653 233333 38899999999998733 11688885
No 215
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=22.95 E-value=28 Score=27.69 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=15.2
Q ss_pred CCCCccCCCCCCCceeec
Q 039088 24 RDDVVSCPDCDGGFVEEI 41 (409)
Q Consensus 24 ~~~~~~CP~C~~GFiEEi 41 (409)
...++.||+|+--|+.+=
T Consensus 45 ~~g~~~CpYCg~~y~~~~ 62 (87)
T 2jz8_A 45 STDEKICPYCSTLYRYDP 62 (87)
T ss_dssp TCCEECCTTTCCEEECCT
T ss_pred CCCeEECCCCCCEeEcCC
Confidence 457899999999998764
No 216
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=22.72 E-value=22 Score=32.20 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=12.2
Q ss_pred ccceeChhhhHHHhhcCCCCCCCCcc
Q 039088 230 CKHIYHSDCILPWLSLRNSCPVCRHE 255 (409)
Q Consensus 230 C~H~FH~~CI~~WL~~~~sCPvCR~~ 255 (409)
|+|+|-. +.+ ..||+|..+
T Consensus 177 CG~i~~g--~~p-----~~CP~C~~~ 195 (202)
T 1yuz_A 177 CGYIHKG--EDF-----EKCPICFRP 195 (202)
T ss_dssp SCCEEES--SCC-----SBCTTTCCB
T ss_pred CCCEEcC--cCC-----CCCCCCCCC
Confidence 6777543 333 389999764
No 217
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.69 E-value=44 Score=24.62 Aligned_cols=37 Identities=22% Similarity=0.479 Sum_probs=26.0
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCC
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELP 257 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~ 257 (409)
..|+-|...+.. . .+..-+..||.+|. +|-.|...|.
T Consensus 6 ~~C~~C~~~I~~-~--~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-R--VLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-C--CBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecC-e--eEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 468889887763 2 22346788898885 4888888775
No 218
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=22.66 E-value=54 Score=24.79 Aligned_cols=31 Identities=23% Similarity=0.528 Sum_probs=23.7
Q ss_pred cCccccccccccccCCCceeecc-cceeChhhhHHH
Q 039088 208 LESHCAVCKEAFELGSEAREMPC-KHIYHSDCILPW 242 (409)
Q Consensus 208 ~~~~C~ICle~f~~g~~~~~lPC-~H~FH~~CI~~W 242 (409)
+..-|.||.++ ..++.+.| +-+||..|...-
T Consensus 7 e~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 34679999887 24677779 889999997653
No 219
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.61 E-value=53 Score=24.42 Aligned_cols=40 Identities=23% Similarity=0.498 Sum_probs=27.7
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCC
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
..|+.|.+.+...+.++. .=+..||..|.. |-.|...|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF~--------C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF-YEDRHFHEGCFR--------CCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC-CSSCCCBTTTSB--------CTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEE-eCCccccccCCe--------ecCCCCccCC
Confidence 479999988774333222 247789988864 8899888753
No 220
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=22.49 E-value=51 Score=27.00 Aligned_cols=33 Identities=18% Similarity=0.517 Sum_probs=24.2
Q ss_pred ceecccCCcceeeccCC----CCccCCCCCCCceeeccc
Q 039088 9 SYWCYRCSRFVRVFSRD----DVVSCPDCDGGFVEEIEN 43 (409)
Q Consensus 9 ~ywCh~C~r~V~~~~~~----~~~~CP~C~~GFiEEi~~ 43 (409)
.-||-.|.-.+.+.... -.++|+.|+ ++++++.
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~--y~~~~~~ 40 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCD--YSEIAAT 40 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSC--CEECCSC
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCC--CeEEcCC
Confidence 56999999998765221 159999995 6777754
No 221
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=22.49 E-value=15 Score=27.05 Aligned_cols=42 Identities=26% Similarity=0.655 Sum_probs=24.5
Q ss_pred CccccccccccccCCCceeec--cc-ceeChhhhHHHhhc----CCCCCCCCc
Q 039088 209 ESHCAVCKEAFELGSEAREMP--CK-HIYHSDCILPWLSL----RNSCPVCRH 254 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lP--C~-H~FH~~CI~~WL~~----~~sCPvCR~ 254 (409)
..-| ||..... +.-+.-=. |. ..||..||. |.. +-.||.|+.
T Consensus 11 ~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 3556 9987532 22111112 55 799999997 322 337998864
No 222
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=22.35 E-value=45 Score=25.84 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=21.8
Q ss_pred ceecccCCcceeeccCCCCc--cCCCCCCCceeecc
Q 039088 9 SYWCYRCSRFVRVFSRDDVV--SCPDCDGGFVEEIE 42 (409)
Q Consensus 9 ~ywCh~C~r~V~~~~~~~~~--~CP~C~~GFiEEi~ 42 (409)
.-+|..|...-.+. .-.+ +||.|++-=...+.
T Consensus 37 ~I~CnDC~~~s~v~--~h~lg~kC~~C~SyNTr~~~ 70 (79)
T 2k2d_A 37 DILCNDCNGRSTVQ--FHILGMKCKICESYNTAQAG 70 (79)
T ss_dssp EEEESSSCCEEEEE--CCTTCCCCTTTSCCCEEESC
T ss_pred EEECCCCCCCccCC--ceeecccCcCCCCcCeEecC
Confidence 35799999986543 2334 89999986665553
No 223
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=21.71 E-value=50 Score=24.40 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=26.0
Q ss_pred CCCCCCceecccCCcceeec----------cCCCCccCCCCCCCceee
Q 039088 3 SIVSSSSYWCYRCSRFVRVF----------SRDDVVSCPDCDGGFVEE 40 (409)
Q Consensus 3 ~~~~~~~ywCh~C~r~V~~~----------~~~~~~~CP~C~~GFiEE 40 (409)
++.....|-|..|.+...-. .....+.|+.|+..|...
T Consensus 2 s~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 49 (96)
T 2dmd_A 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADS 49 (96)
T ss_dssp CCCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSH
T ss_pred CCCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCH
Confidence 44566789999998765321 123568899999888654
No 224
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.66 E-value=60 Score=23.93 Aligned_cols=39 Identities=15% Similarity=0.511 Sum_probs=28.5
Q ss_pred ccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCCC
Q 039088 210 SHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPAD 259 (409)
Q Consensus 210 ~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~ 259 (409)
..|+.|.+.+.. +. +..-+..||..|.. |-.|+..|...
T Consensus 16 ~~C~~C~~~I~~-~~--v~a~~~~~H~~CF~--------C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NY--LSAMDTVWHPECFV--------CGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCS-SC--EEETTEEECTTTCB--------CSSSCCBSCSS
T ss_pred CccccCCCeecc-ee--EEECCCeEecCcCC--------hhhCCCCCCCC
Confidence 579999988774 22 23357889998864 99999888653
No 225
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=21.62 E-value=33 Score=23.97 Aligned_cols=16 Identities=38% Similarity=0.953 Sum_probs=10.1
Q ss_pred HHHhhcCC--CCCCCCcc
Q 039088 240 LPWLSLRN--SCPVCRHE 255 (409)
Q Consensus 240 ~~WL~~~~--sCPvCR~~ 255 (409)
.+|-..-. .||+|...
T Consensus 22 t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 22 VPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CCGGGSCTTCBCTTTCCB
T ss_pred cchhhCCCCCcCcCCCCc
Confidence 34544433 89999764
No 226
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.26 E-value=31 Score=19.07 Aligned_cols=13 Identities=23% Similarity=0.703 Sum_probs=10.1
Q ss_pred ccCCCCCCCceee
Q 039088 28 VSCPDCDGGFVEE 40 (409)
Q Consensus 28 ~~CP~C~~GFiEE 40 (409)
+.|+.|+..|...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 1ard_A 3 FVCEVCTRAFARQ 15 (29)
T ss_dssp CBCTTTCCBCSSH
T ss_pred eECCCCCcccCCH
Confidence 6799999888653
No 227
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.97 E-value=29 Score=33.73 Aligned_cols=48 Identities=23% Similarity=0.469 Sum_probs=31.3
Q ss_pred ccCccccccccccccCCCcee----ecccceeChhhhHHHhhcCCCCCCCCcc
Q 039088 207 ELESHCAVCKEAFELGSEARE----MPCKHIYHSDCILPWLSLRNSCPVCRHE 255 (409)
Q Consensus 207 ~~~~~C~ICle~f~~g~~~~~----lPC~H~FH~~CI~~WL~~~~sCPvCR~~ 255 (409)
.....|+||-..-... .++. --=.+.+|.-|-..|-..+-.||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 3457899997754321 1110 0123567788999998888899999664
No 228
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=20.70 E-value=47 Score=29.20 Aligned_cols=40 Identities=20% Similarity=0.542 Sum_probs=27.4
Q ss_pred CccccccccccccCCCceeecccceeChhhhHHHhhcCCCCCCCCccCCC
Q 039088 209 ESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPA 258 (409)
Q Consensus 209 ~~~C~ICle~f~~g~~~~~lPC~H~FH~~CI~~WL~~~~sCPvCR~~l~~ 258 (409)
...|+.|.+.+..++.+. .-+..||..|. .|-.|...|..
T Consensus 115 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 154 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVI--GAGKSWHKSCF--------RCAKCGKSLES 154 (192)
T ss_dssp CEECTTTSCEECSSSCEE--ETTEEECTTTC--------BCTTTCCBCCS
T ss_pred CCcCCCCCCEecCcEEEe--cCCCccchhcC--------CccccCCCCCC
Confidence 357888888776544433 35778888875 38888887754
No 229
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=20.64 E-value=27 Score=26.31 Aligned_cols=26 Identities=8% Similarity=0.208 Sum_probs=11.8
Q ss_pred cccCCcceeeccCCCCccCCCCCCCc
Q 039088 12 CYRCSRFVRVFSRDDVVSCPDCDGGF 37 (409)
Q Consensus 12 Ch~C~r~V~~~~~~~~~~CP~C~~GF 37 (409)
|-.|...+.......+++|+.|+--|
T Consensus 13 CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 13 CPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred CCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 55555544433223445555554333
Done!