BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039092
(535 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 138/245 (56%), Gaps = 20/245 (8%)
Query: 264 SRYCLVASKQMVGIFLTVWVKSDLRDSVRNMKVSCVGRGLMGYLGNKGSISISMSLHQTS 323
++Y V ++VGI L ++VK + + ++ VG G+MG +GNKG ++I H TS
Sbjct: 74 AKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTS 133
Query: 324 FCFICSHLTSGQKEGDELRRNSDVMEIIRKTRF----PKVHGIGDENSPQTILEHDRIIW 379
C + SHL + +E + RRN D +I + +F P + P TI HD I+W
Sbjct: 134 ICVVNSHLAAHIEEYE--RRNQDYKDICSRMQFCQPDPSL-------PPLTISNHDVILW 184
Query: 380 LGDLNYRI-ALSYRFAKALVEMRNWRALLENDQLRIEQRKGHVFNGWSEGKIYFPPTYKY 438
LGDLNYRI L K L+E ++++ L DQL+I+ VF G++EG++ F PTYKY
Sbjct: 185 LGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKY 244
Query: 439 SNNSDRYAGEDRHPKEKRRTPAWCDRILWYGRGLHQLSYVRGES-RFSDHRPVYSIFLAE 497
SD D EK R PAWCDRILW G+ + QLSY + + SDH+PV S+F
Sbjct: 245 DTGSD-----DWDTSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIG 299
Query: 498 VESVN 502
V VN
Sbjct: 300 VRVVN 304
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 168 bits (426), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 134/233 (57%), Gaps = 12/233 (5%)
Query: 264 SRYCLVASKQMVGIFLTVWVKSDLRDSVRNMKVSCVGRGLMGYLGNKGSISISMSLHQTS 323
++Y V ++VGI L ++VK + + ++ VG G+MG +GNKG ++I H TS
Sbjct: 77 AKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTS 136
Query: 324 FCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDL 383
C + SHL + +E + RRN D +I + +F + P TI HD I+WLGDL
Sbjct: 137 ICVVNSHLAAHIEEYE--RRNQDYKDICSRMQFCQP---DPSLPPLTISNHDVILWLGDL 191
Query: 384 NYRI-ALSYRFAKALVEMRNWRALLENDQLRIEQRKGHVFNGWSEGKIYFPPTYKYSNNS 442
NYRI L K L+E ++++ L DQL+I+ VF G++EG++ F PTYKY S
Sbjct: 192 NYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGS 251
Query: 443 DRYAGEDRHPKEKRRTPAWCDRILWYGRGLHQLSYVRGES-RFSDHRPVYSIF 494
D D EK R PAWCDRILW G+ + QLSY + + SDH+PV S+F
Sbjct: 252 D-----DWDTSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVF 299
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 84 FYFSRGHRIFVATWNVAGKSPPSYLNLEDWLQTSPPA-DIYVLG 126
+ + + R F T+NV G+SP L L WL A D+Y +G
Sbjct: 2 YTYIQNFRFFAGTYNVNGQSPKECLRL--WLSNGIQAPDVYCVG 43
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 124/246 (50%), Gaps = 18/246 (7%)
Query: 262 GPSRYCLVASKQMVGIFLTVWVKSDLRDSVRNMKVSCVGRGLMGYLGNKGSISISMSLHQ 321
GP Y + S Q+VG L ++ K S++N++ + GL G GNKG+++I
Sbjct: 99 GPG-YVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYED 157
Query: 322 TSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLG 381
T CFI SHL +G DE R+ D I RF + ++I HD ++W G
Sbjct: 158 TGLCFITSHLAAGYTNYDE--RDHDYRTIASGLRFRR---------GRSIFNHDYVVWFG 206
Query: 382 DLNYRIALSYRFAKALVEMRNWRALLENDQLRIEQRKGHVFNGWSEGKIYFPPTYKYSNN 441
D NYRI+L+Y + L E DQL + G VF +SE I FPPTYK+
Sbjct: 207 DFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIG 266
Query: 442 SDRYAGEDRHPKEKRRTPAWCDRILWYGRGLHQLSYVRGESRFSDHRPVYSIFLAEVESV 501
+D Y D+H R PAW DRIL+ G L SY +SDHRP+Y+ + A + V
Sbjct: 267 TDIYDTSDKH-----RVPAWTDRILYRGE-LVPHSYQSVPLYYSDHRPIYATYEANIVKV 320
Query: 502 NRSRIK 507
+R + K
Sbjct: 321 DREKKK 326
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 4/38 (10%)
Query: 91 RIFVATWNVAGKSPPSYLNLEDWL--QTSPPADIYVLG 126
+IFVA++N+ G S + LE+WL + +P ADIYV+G
Sbjct: 26 KIFVASYNLNGCSATT--KLENWLFPENTPLADIYVVG 61
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 123/243 (50%), Gaps = 16/243 (6%)
Query: 266 YCLVASKQMVGIFLTVWVKSDLRDSVRNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFC 325
Y +A + + I + V VK + + + ++ S V G+ LGNKG++ +S + TSF
Sbjct: 81 YRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFG 140
Query: 326 FICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDE--NSPQTILEHDRIIWLGDL 383
F+ HLTSG ++ RRN + ++I+R + +GD N+ L + W GDL
Sbjct: 141 FVNCHLTSGNEK--TARRNQNYLDILR------LLSLGDRQLNAFDISLRFTHLFWFGDL 192
Query: 384 NYRIALSYRFAKALVEMRNWRALLENDQLRIEQRKGHVFNGWSEGKIYFPPTYKYSNNS- 442
NYR+ + + + + + LL DQL +E+ K VF +SE +I FPPTY+Y S
Sbjct: 193 NYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSR 252
Query: 443 DRYAGEDRHPKEKR-RTPAWCDRILWYGR-GLHQLSYVRG---ESRFSDHRPVYSIFLAE 497
D YA + P R P+WCDRILW H + G + SDH PV+ F
Sbjct: 253 DTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVG 312
Query: 498 VES 500
V S
Sbjct: 313 VTS 315
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 23/69 (33%)
Query: 92 IFVATWNVAGKSPPSYLNLEDWLQT------------SPPADIYVLG---------KWLA 130
+F+ TWN+ PP N+ W + + P DIYV G +WL
Sbjct: 10 VFIGTWNMGSVPPPK--NVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLD 67
Query: 131 LIRKTLNSL 139
L+R L L
Sbjct: 68 LLRGGLKEL 76
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 123/249 (49%), Gaps = 22/249 (8%)
Query: 262 GPSRYCLVASKQMVGIFLTVWVKSDLRDSVRNMKVSCVGRGLMGYLGNKGSISISMSLHQ 321
GP Y L++S ++++++++ DL ++ S V ++ + KG++ IS +
Sbjct: 84 GP-HYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFG 142
Query: 322 TSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDEN-----SPQTILEHDR 376
TSF FI SH TSG +G R D ++ P+ + D N + D
Sbjct: 143 TSFLFITSHFTSG--DGKVAERLLDYTRTVQALVLPR--NVPDTNPYRSSAADVTTRFDE 198
Query: 377 IIWLGDLNYRIALSYRFAKALV---EMRNWRALLENDQLRIEQRKGHVFNGWSEGKIYFP 433
+ W GD N+R++ AL+ + + ALL++DQL E RKG +F G+ E I+F
Sbjct: 199 VFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFL 258
Query: 434 PTYKYSNNSDRYAGEDRHPKEKRRTPAWCDRILWYGRGLHQLSYVRGES----RFSDHRP 489
P+YK+ D Y K+RTP++ DR+L+ R + V S + SDHRP
Sbjct: 259 PSYKFDIGKDTY-----DSTSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRP 313
Query: 490 VYSIFLAEV 498
VY +F +V
Sbjct: 314 VYGLFRVKV 322
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin
pdb|1Y21|A Chain A, Crystal Structure Of Cimex Nitrophorin No Complex
pdb|1SI6|X Chain X, Crystal Structure Of Cimex Nitrophorin Complex With Co
pdb|1YJH|A Chain A, Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
pdb|2IMQ|X Chain X, Crystal Structure Of Ferrous Cimex Nitrophorin
Length = 282
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 29/188 (15%)
Query: 311 GSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQT 370
G I S +++ F F S ++ + DV K + ++ P
Sbjct: 116 GGIVTSFTIYNKRFSFTTSRMS-----------DEDVTSTNTKYAYDTRLDYSKKDDPS- 163
Query: 371 ILEHDRIIWLGDLNYRIALSYRFAKALVEMRNWRALLENDQLRIEQRKGHVFNGWSEGKI 430
D + W+GDLN R+ + AK+LV+ N L+ DQL+ + ++ +F+GW+E ++
Sbjct: 164 ----DFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLK-KAKEQKLFDGWTEPQV 218
Query: 431 YFPPTYKYSNNSDRYAGEDRHPKEKRRTPAWCDRILW---YGRGLHQLSYVRGES-RFSD 486
F PTYK+ N+D Y + TP+W DR L+ G+ + LSY + + ++
Sbjct: 219 TFKPTYKFKPNTDEY--------DLSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTE 270
Query: 487 HRPVYSIF 494
HRPV + F
Sbjct: 271 HRPVLAKF 278
>pdb|3VN4|A Chain A, Crystal Structure Of The Exosite-Containing Fragment Of
Human Adamts13 (P475s Mutant)
Length = 410
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 381 GDLNYRIALSYRFAKALVEMRNWRALLENDQLRIEQRKGHVFNGWSEGKIYF 432
G + YR+AL+ L E+R W L E+ +++ +R G + + I F
Sbjct: 340 GRVEYRVALTEDRLPRLEEIRIWGPLQEDADIQVYRRYGEEYGNLTRPDITF 391
>pdb|3GHM|A Chain A, Crystal Structure Of The Exosite-Containing Fragment Of
Human Adamts13 (Form-1)
Length = 410
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 381 GDLNYRIALSYRFAKALVEMRNWRALLENDQLRIEQRKGHVFNGWSEGKIYF 432
G + YR+AL+ L E+R W L E+ +++ +R G + + I F
Sbjct: 340 GRVEYRVALTEDRLPRLEEIRIWGPLQEDADIQVYRRYGEEYGNLTRPDITF 391
>pdb|3GHN|A Chain A, Crystal Structure Of The Exosite-Containing Fragment Of
Human Adamts13 (Form-2)
Length = 419
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 381 GDLNYRIALSYRFAKALVEMRNWRALLENDQLRIEQRKGHVFNGWSEGKIYF 432
G + YR+AL+ L E+R W L E+ +++ +R G + + I F
Sbjct: 340 GRVEYRVALTEDRLPRLEEIRIWGPLQEDADIQVYRRYGEEYGNLTRPDITF 391
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,562,046
Number of Sequences: 62578
Number of extensions: 706097
Number of successful extensions: 1154
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1121
Number of HSP's gapped (non-prelim): 17
length of query: 535
length of database: 14,973,337
effective HSP length: 103
effective length of query: 432
effective length of database: 8,527,803
effective search space: 3684010896
effective search space used: 3684010896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)