Query 039092
Match_columns 535
No_of_seqs 304 out of 1040
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 06:13:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03191 Type I inositol-1,4,5 100.0 2E-125 4E-130 1020.0 37.5 486 1-521 11-619 (621)
2 KOG0566 Inositol-1,4,5-triphos 100.0 1.1E-81 2.4E-86 693.9 24.0 229 264-508 615-843 (1080)
3 smart00128 IPPc Inositol polyp 100.0 2.4E-74 5.1E-79 591.5 27.0 226 263-502 79-310 (310)
4 COG5411 Phosphatidylinositol 5 100.0 2.6E-57 5.7E-62 472.8 17.5 228 262-505 105-335 (460)
5 PTZ00312 inositol-1,4,5-tripho 100.0 2.2E-31 4.7E-36 267.4 11.1 175 307-494 65-356 (356)
6 KOG0565 Inositol polyphosphate 100.0 3.1E-29 6.7E-34 230.6 12.1 142 265-410 2-145 (145)
7 KOG1976 Inositol polyphosphate 99.7 7.2E-18 1.6E-22 170.5 4.3 166 307-497 154-389 (391)
8 TIGR03395 sphingomy sphingomye 98.3 1.4E-05 3.1E-10 82.0 14.1 148 305-493 116-282 (283)
9 PF03372 Exo_endo_phos: Endonu 98.1 8.2E-07 1.8E-11 83.3 1.3 98 275-390 72-172 (249)
10 PRK05421 hypothetical protein; 98.0 3.9E-05 8.5E-10 77.5 11.9 127 310-497 135-262 (263)
11 PRK11756 exonuclease III; Prov 96.9 0.0069 1.5E-07 60.8 10.9 27 309-335 88-114 (268)
12 TIGR00633 xth exodeoxyribonucl 96.7 0.014 3.1E-07 57.3 10.8 31 93-125 2-33 (255)
13 COG3568 ElsH Metal-dependent h 96.4 0.023 5.1E-07 58.2 10.4 62 309-390 118-187 (259)
14 PTZ00297 pantothenate kinase; 96.0 0.036 7.9E-07 68.6 11.1 72 307-385 130-206 (1452)
15 PRK13911 exodeoxyribonuclease 93.3 0.89 1.9E-05 46.1 11.3 31 94-125 3-33 (250)
16 KOG2756 Predicted Mg2+-depende 89.4 1.3 2.8E-05 46.1 7.6 62 314-388 196-257 (349)
17 TIGR00195 exoDNase_III exodeox 87.4 1.2 2.6E-05 44.3 6.0 30 94-125 3-32 (254)
18 KOG3873 Sphingomyelinase famil 85.6 2.2 4.9E-05 45.9 7.0 200 269-500 73-296 (422)
19 KOG2338 Transcriptional effect 85.5 1.4 3E-05 48.9 5.6 94 279-385 204-303 (495)
20 PF14529 Exo_endo_phos_2: Endo 84.8 0.3 6.6E-06 42.0 0.2 33 459-491 86-119 (119)
21 smart00476 DNaseIc deoxyribonu 75.5 12 0.00026 38.8 8.2 57 312-387 129-189 (276)
22 PLN03144 Carbon catabolite rep 71.3 6.5 0.00014 45.2 5.5 63 322-402 417-480 (606)
23 PRK13911 exodeoxyribonuclease 62.0 3.9 8.6E-05 41.5 1.3 55 313-386 90-148 (250)
24 COG3021 Uncharacterized protei 58.8 5.3 0.00012 42.2 1.6 60 308-385 173-233 (309)
25 PRK15251 cytolethal distending 41.4 54 0.0012 34.2 5.7 55 308-384 140-194 (271)
26 KOG3870 Uncharacterized conser 31.0 21 0.00044 39.2 0.8 18 371-388 349-366 (434)
27 TIGR00633 xth exodeoxyribonucl 30.7 22 0.00048 34.8 0.9 53 322-387 100-154 (255)
28 COG0708 XthA Exonuclease III [ 24.1 17 0.00038 37.6 -1.2 30 94-125 3-32 (261)
29 PRK10947 global DNA-binding tr 24.0 44 0.00096 31.3 1.5 24 432-462 93-119 (135)
30 TIGR00195 exoDNase_III exodeox 23.0 32 0.0007 34.1 0.5 13 323-335 98-110 (254)
31 PF08053 Tna_leader: Tryptopha 21.4 19 0.0004 23.7 -1.0 14 7-20 8-21 (24)
32 PRK09806 tryptophanase leader 20.7 18 0.00039 24.2 -1.2 14 7-20 8-21 (26)
No 1
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=1.7e-125 Score=1020.05 Aligned_cols=486 Identities=43% Similarity=0.769 Sum_probs=405.1
Q ss_pred CCchHHHHHhhhccCCCCCcccCCCCCc-hh---------------------------------------hhccCCCccc
Q 039092 1 LSWPKTLVKKWFNIKNRAEDFQADDDDY-EE---------------------------------------RSSRRSSDRV 40 (535)
Q Consensus 1 ~~w~~~v~~kw~n~~~~~~~f~ad~~~~-~~---------------------------------------~~~~~~~~~~ 40 (535)
++|||+||||||||++|++||+||+.++ ++ +.++++.+++
T Consensus 11 ~~w~~~v~rkwlni~~k~~df~ad~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (621)
T PLN03191 11 AFWPSIVMKKWLNIKPKVYDFSEDEYDTETESEDDACSVKDVRVNVDEDHANRRQGNQSVFGNQISDGGVSVSKGYSSKH 90 (621)
T ss_pred cccHHHHHHHHhCcCCcccccCcccccCCCccccchhhhhcccccccccccccccccccccccccccCccccccccchhh
Confidence 6899999999999999999999997754 10 1123445899
Q ss_pred cccccCcCCcccccccchhhHHHHhhhhhhheehhhccccCCcccccccceEEEEecccCCCCCCCCCCchhhcCCCCCC
Q 039092 41 RRGKIDHEASQVTDVNNYKYAAYALVLFSWTIYIIETAVLSPSFYFSRGHRIFVATWNVAGKSPPSYLNLEDWLQTSPPA 120 (535)
Q Consensus 41 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rifvgTWNVgG~~P~~~Ldl~dwL~~~~~a 120 (535)
||++++|+|||||+++++ |||||||||||+.||++|+|++||++.+||
T Consensus 91 rr~~~e~~ra~y~~~~~~--------------------------------rv~v~TWNV~g~~p~~~l~l~~wl~~~~p~ 138 (621)
T PLN03191 91 RRGKSETLRAQYINTKDI--------------------------------RVTIGTWNVAGRLPSEDLEIEDWLSTEEPA 138 (621)
T ss_pred hccchhhhHHHhccccce--------------------------------EEEEEEeecCCCCCcccCCHHHhccCCCCC
Confidence 999999999999999999 999999999999999999999999999999
Q ss_pred cEEEEc----------------------chHHHHHHHhCCCCCCC--CCCCCCCCCCCC-----cccccccccC-CCCCC
Q 039092 121 DIYVLG----------------------KWLALIRKTLNSLPGTS--GGCHTPSPTPDP-----IVELDADFEG-STRPK 170 (535)
Q Consensus 121 DIYVlG----------------------kW~~lIr~~LN~~~~~~--~~~~~~~p~~~~-----~~~~d~~~~~-~~~~~ 170 (535)
|||||| +|+.+||+|||+.++.. ++|+++||+|.. ..|++.++++ +..+.
T Consensus 139 DiyviG~QE~v~lna~nv~~~~~~~~~~~W~~~i~~tl~~~~~~~~~~k~~S~ppsp~~~~~~~~~e~~~~~d~~~~~~~ 218 (621)
T PLN03191 139 DIYIIGFQEVVPLNAGNVLGAEDSRPIPKWEAIIRRTLNKSNKPESKHKSYSAPPSPVLRTSIVADELAEEVDSLPLEMM 218 (621)
T ss_pred CEEEEeeEEeccCcHhhhhccccCCchhhHHHHHHHHHhccCCCCCccccCCCCCCcccCCcchhhhhhhhcccChhhhc
Confidence 999999 79999999999996654 677877777753 1255556655 44455
Q ss_pred CCcccc------------cccccccccccccccccccCccccccccccccccccC--CCCCCCCCCC-----C-------
Q 039092 171 ASSFFH------------RRSFQSLSRSMRMDNEMALSQPQLDRRFSVCDRVIFG--HRPSDYDPNF-----R------- 224 (535)
Q Consensus 171 ~~~~~~------------~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--~~~~~~~~~~-----~------- 224 (535)
+..|++ .+.|...+.+++++++.+.+++.|+|+||+|+|++++ ++|.++.++. +
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~s~~~r~~~~~~e~p~~~~~~~~~~~~~~~~~~~~ 298 (621)
T PLN03191 219 NNEFIDAATGCPSLEPERNKNIGWPEHSLDATPQVVSSNSKLRRVFSSSARLGFKWPENPSLFSPQRFALNARGLKRSHR 298 (621)
T ss_pred ccccccccccccccchhhccccCCcccccccCcccccccccceeeeccccccccCCCCCccccCchhhcccccccchhhh
Confidence 566666 2344455688888888788899999999999999887 5566554431 1
Q ss_pred --------CCCCCC----------------CCCCCCCCCccccCCccCCCCCcccccCCCCCCCCeEEEEeeeeeceEEE
Q 039092 225 --------WGSSDD----------------ENGPGDSPVNTHYSPVTYSGSLFTEDRDRPCGPSRYCLVASKQMVGIFLT 280 (535)
Q Consensus 225 --------~~s~~~----------------~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~Y~~V~S~qmvGI~L~ 280 (535)
|.+..+ .......+....+++++.................+|++|+|+|||||+|+
T Consensus 299 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YvkV~S~qLvGl~L~ 378 (621)
T PLN03191 299 SFGNLGLSWNEIKQRSEVPEVPEVIDSLSDVSDRSSEAEDDTFKEVPSYQLPEDLIKDCRKVKQKYVRIVSKQMVGIYVS 378 (621)
T ss_pred ccccccccccchhhcccccccccccccccccccccCCCcccccccCChhhhhhHHHHhhccCCCCEEEEEEEeeeeEEEE
Confidence 211000 00000001111223332211101111133456789999999999999999
Q ss_pred EEEeccccccccceeeeEEeecccccccCceEEEEEEEEcCeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCcc
Q 039092 281 VWVKSDLRDSVRNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVH 360 (535)
Q Consensus 281 Vfvr~~l~~~I~~v~~s~VgtGi~G~lGNKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~ 360 (535)
||||++++++|++|++++|+||+||++||||||+|+|.|++|+|||||||||||++++++++||+|+.+|++++.|+...
T Consensus 379 VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~ 458 (621)
T PLN03191 379 VWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRFSSVL 458 (621)
T ss_pred EEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEeccccccccchHHHHHHHHHHHHhccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999998643
Q ss_pred CCCCCCCCccccccceEEEeccccceeccCHHHHHHHHHhccHHHHHhhhHHHHHHHcCCCCCCCcccccccCCCCCCCC
Q 039092 361 GIGDENSPQTILEHDRIIWLGDLNYRIALSYRFAKALVEMRNWRALLENDQLRIEQRKGHVFNGWSEGKIYFPPTYKYSN 440 (535)
Q Consensus 361 ~~~~~~~p~~I~dhD~ifw~GDLNYRI~l~~~~v~~li~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~F~PTYKy~~ 440 (535)
+. ..+.+|.+||+|||||||||||++++++++++|++++|++||++|||+.++++|++|.||+||+|+|||||||+.
T Consensus 459 ~~---~~~~~I~dhD~vFWlGDLNYRIdl~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~GF~Eg~I~FpPTYKYd~ 535 (621)
T PLN03191 459 DT---DQPQTIPSHDQIFWFGDLNYRLNMLDTEVRKLVAQKRWDELINSDQLIKELRSGHVFDGWKEGPIKFPPTYKYEI 535 (621)
T ss_pred cc---CCCccccccceEEEecCccccccCCHHHHHHHHhhccHHHHHHHhHHHHHHHcCCccCCcccCCccCCCCccccc
Confidence 32 246789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCCCCCCccccccccceeeecCCceeeeeeccccccCCCcCccceEEEEEeeechhhhhhhccccccc---c
Q 039092 441 NSDRYAGEDRHPKEKRRTPAWCDRILWYGRGLHQLSYVRGESRFSDHRPVYSIFLAEVESVNRSRIKKSMSCSSAR---I 517 (535)
Q Consensus 441 ~Sd~Y~~~~~~~~~KkR~PAWCDRILw~g~~i~qlsY~~~e~~~SDHrPV~A~F~v~v~~~~~~k~k~~~~~~~~~---~ 517 (535)
|++.|++++.++++|+|+|||||||||++++++++.|.+.++++||||||+|+|.++|++++++|++|+++++++. |
T Consensus 536 gSd~Ydg~~~~Ts~KkR~PSWCDRILykg~~i~~l~Y~s~ei~~SDHRPV~A~F~v~V~~id~~k~q~~~~~~~a~~~~~ 615 (621)
T PLN03191 536 NSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLCYKRSEIRLSDHRPVSSMFLVEVEVFDHRKLQRALNVNSAAASAV 615 (621)
T ss_pred CCccccccccccccCccccchhheEeecCCCceEeEeccCCcccCCchhcceEEEEEEEecCHHHHHhhhhcchhhhhcc
Confidence 9999998777788999999999999999999999999999999999999999999999999999999999988876 6
Q ss_pred cccc
Q 039092 518 EVEE 521 (535)
Q Consensus 518 ~~e~ 521 (535)
+.|.
T Consensus 616 ~~~~ 619 (621)
T PLN03191 616 HPEP 619 (621)
T ss_pred CCcc
Confidence 5553
No 2
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-81 Score=693.91 Aligned_cols=229 Identities=45% Similarity=0.807 Sum_probs=219.8
Q ss_pred CCeEEEEeeeeeceEEEEEEeccccccccceeeeEEeecccccccCceEEEEEEEEcCeEEEEEcccCCCCCCCccHHHH
Q 039092 264 SRYCLVASKQMVGIFLTVWVKSDLRDSVRNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRR 343 (535)
Q Consensus 264 ~~Y~~V~S~qmvGI~L~Vfvr~~l~~~I~~v~~s~VgtGi~G~lGNKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~rR 343 (535)
.+|+++.|.||||++|++|+|.++.++|++|..++++||++|..||||||+|||.++.|+|||||+|||||+.+ ...|
T Consensus 615 ~kYvlL~s~QlvGv~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~sn--v~ER 692 (1080)
T KOG0566|consen 615 NKYVLLRSEQLVGVCLLLFIRPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSN--VEER 692 (1080)
T ss_pred CceEEEehhhhheeeEEEEEcccccchhhhcccceeecccccccCCCceEEEEEEeccccEEEEecccccccch--Hhhh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999976 4579
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEeccccceeccCHHHHHHHHHhccHHHHHhhhHHHHHHHcCCCCC
Q 039092 344 NSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYRIALSYRFAKALVEMRNWRALLENDQLRIEQRKGHVFN 423 (535)
Q Consensus 344 N~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI~l~~~~v~~li~~~~~~~LL~~DQL~~e~~~g~vF~ 423 (535)
|.||.+|.++++||+. .+|.+||+|||||||||||+|++++|+.+|..++|+.|+++|||..|+.+|.+|.
T Consensus 693 n~DY~tI~r~l~Fp~G---------r~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~d~~kL~e~DQL~~q~~~G~vF~ 763 (1080)
T KOG0566|consen 693 NEDYKTIARKLRFPRG---------RMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQDLDKLLEYDQLTQQMNAGQVFP 763 (1080)
T ss_pred hhhHHHHHHhccccCC---------ccccCCceEEEecccceeecCCHHHHHHHHHhccHHHHhhHHHHHHHHhcCcccc
Confidence 9999999999999862 5799999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCCCCCCCCCcCCCCCCCCCCCCccccccccceeeecCCceeeeeeccccccCCCcCccceEEEEEeeech
Q 039092 424 GWSEGKIYFPPTYKYSNNSDRYAGEDRHPKEKRRTPAWCDRILWYGRGLHQLSYVRGESRFSDHRPVYSIFLAEVESVNR 503 (535)
Q Consensus 424 gf~Eg~I~F~PTYKy~~~Sd~Y~~~~~~~~~KkR~PAWCDRILw~g~~i~qlsY~~~e~~~SDHrPV~A~F~v~v~~~~~ 503 (535)
||.|++|+|+|||||+.+|+.||+ ++|.|+|||||||||+++.+.+++|.+.|+++||||||+|+|.++|-.++.
T Consensus 764 gF~E~~ltF~PTYKyD~gTd~YDT-----SeK~R~PAWTDRIL~r~e~~~~l~Y~~~el~~SDHRPV~A~~~a~i~~Vd~ 838 (1080)
T KOG0566|consen 764 GFHEGQLTFPPTYKYDPGTDDYDT-----SEKCRTPAWTDRILWRGEKLELLSYKRAELKTSDHRPVYAIFRAEIFEVDE 838 (1080)
T ss_pred cccccccccCCcccccCCCCcccc-----chhccCccchhhheeccccccccccccccccccCCCceEEEEEEEEEEEcH
Confidence 999999999999999999999995 899999999999999999999999999999999999999999999999998
Q ss_pred hhhhh
Q 039092 504 SRIKK 508 (535)
Q Consensus 504 ~k~k~ 508 (535)
++-++
T Consensus 839 ~kk~~ 843 (1080)
T KOG0566|consen 839 QKKLR 843 (1080)
T ss_pred HHHHH
Confidence 76443
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=2.4e-74 Score=591.52 Aligned_cols=226 Identities=38% Similarity=0.723 Sum_probs=207.9
Q ss_pred CCCeEEEEeeeeeceEEEEEEeccccccccceeeeEEeecccccccCceEEEEEEEEcCeEEEEEcccCCCCCCCccHHH
Q 039092 263 PSRYCLVASKQMVGIFLTVWVKSDLRDSVRNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICSHLTSGQKEGDELR 342 (535)
Q Consensus 263 ~~~Y~~V~S~qmvGI~L~Vfvr~~l~~~I~~v~~s~VgtGi~G~lGNKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~r 342 (535)
+.+|++|++.+|+||+|+||+|.++.++|+++.+++|++|++|.+||||||+++|.+.+++||||||||+||+++ ..+
T Consensus 79 ~~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~--~~~ 156 (310)
T smart00128 79 DGQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGASN--VEQ 156 (310)
T ss_pred CCceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccch--hhh
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999864 678
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEeccccceeccCH-HHHHHHHHhccHHHHHhhhHHHHHHHcCCC
Q 039092 343 RNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYRIALSY-RFAKALVEMRNWRALLENDQLRIEQRKGHV 421 (535)
Q Consensus 343 RN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI~l~~-~~v~~li~~~~~~~LL~~DQL~~e~~~g~v 421 (535)
||+|+.+|++++.|+... ...+.+||++||||||||||++.+ ++++++++.++|..||++|||+.+++++.+
T Consensus 157 R~~~~~~I~~~~~f~~~~-------~~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~ 229 (310)
T smart00128 157 RNQDYKTILRALSFPERA-------ELSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKKEFDDLLEKDQLNRQKEAGKV 229 (310)
T ss_pred hHHHHHHHHHhcCCCCCc-------cccccccceEEEecCcceeecCCCHHHHHHHHhhCcHHHHhhhhhHHHHhhcccc
Confidence 999999999999987521 112678999999999999999988 899999999999999999999999999999
Q ss_pred CCCCcccccccCCCCCCC-CCCcCCCCCCCCCCCCccccccccceeeec--CCceeee-eec-cccccCCCcCccceEEE
Q 039092 422 FNGWSEGKIYFPPTYKYS-NNSDRYAGEDRHPKEKRRTPAWCDRILWYG--RGLHQLS-YVR-GESRFSDHRPVYSIFLA 496 (535)
Q Consensus 422 F~gf~Eg~I~F~PTYKy~-~~Sd~Y~~~~~~~~~KkR~PAWCDRILw~g--~~i~qls-Y~~-~e~~~SDHrPV~A~F~v 496 (535)
|.||.|++|+|||||||+ .+++.|++ ++|+|+|||||||||+. .++.++. |.+ .++++||||||+|+|.+
T Consensus 230 f~~f~E~~I~F~PTYK~~~~~t~~Yd~-----~~k~R~PsWcDRIL~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~~~f~v 304 (310)
T smart00128 230 FKGFQEGPITFPPTYKYDSVGTETYDT-----SEKKRVPAWCDRILYRSNGPNLIQLSEYHSGMELTTSDHKPVFATFRL 304 (310)
T ss_pred cCcCccCCcCCCCCeeecCCCCccccC-----cccccCcchhheehhhccCCCceecccccCCCccCCcCcccccEEEEE
Confidence 999999999999999999 99999985 67999999999999994 4566665 876 57999999999999999
Q ss_pred EEeeec
Q 039092 497 EVESVN 502 (535)
Q Consensus 497 ~v~~~~ 502 (535)
.|..++
T Consensus 305 ~~~~~~ 310 (310)
T smart00128 305 KVTAVD 310 (310)
T ss_pred EEEecC
Confidence 998763
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-57 Score=472.83 Aligned_cols=228 Identities=36% Similarity=0.600 Sum_probs=214.2
Q ss_pred CCCCeEEEEeeeeeceEEEEEEeccccccccceeeeEEeecccccccCceEEEEEEEEcCeEEEEEcccCCCCCCCccHH
Q 039092 262 GPSRYCLVASKQMVGIFLTVWVKSDLRDSVRNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICSHLTSGQKEGDEL 341 (535)
Q Consensus 262 ~~~~Y~~V~S~qmvGI~L~Vfvr~~l~~~I~~v~~s~VgtGi~G~lGNKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~ 341 (535)
...+|.++.+.||+|+++.||.+.+..+.+.+|..+.-+||++|..+|||+|+++|.+..++||||+|||+||..+ .+
T Consensus 105 ~~eky~~l~s~q~~~~~~~vf~~~~~~~v~~~V~~~~~KtG~gg~s~nKGav~i~~~~~~t~~cFv~shlaag~~N--~e 182 (460)
T COG5411 105 SDEKYSLLRSPQLGGILLRVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAVAIRFNYERTSFCFVNSHLAAGVNN--IE 182 (460)
T ss_pred cCCceEEecchhccCcceEEeeeccccceeccccccccccccceecccccccceeEEeecCCcEEEecchhccccc--HH
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999864 56
Q ss_pred HHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEeccccceeccCHHHHHHHHHhcc--HHHHHhhhHHHHHHHcC
Q 039092 342 RRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYRIALSYRFAKALVEMRN--WRALLENDQLRIEQRKG 419 (535)
Q Consensus 342 rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI~l~~~~v~~li~~~~--~~~LL~~DQL~~e~~~g 419 (535)
+|+.||..|.+.++|++. ..|.+||+|||+|||||||++.++++...+...+ ...|+++|||..|+..|
T Consensus 183 eR~~Dy~~I~~~i~f~~g---------~~I~~hdti~w~GDlNyRVts~~e~v~~~~~~~~g~~~~l~~~DqL~~e~~~g 253 (460)
T COG5411 183 ERIFDYRSIASNICFSRG---------LRIYDHDTIFWLGDLNYRVTSTNEEVRPEIASDDGRLDKLFEYDQLLWEMEVG 253 (460)
T ss_pred HHHHHHHHHHHheecCCC---------ceecccceEEEecccCceeecCchhcchhhhCCcchhhhhhhhhhHhhhhccc
Confidence 799999999999999752 4689999999999999999999999998888777 77899999999999999
Q ss_pred CCCCCCcccccccCCCCCCCCCCcCCCCCCCCCCCCccccccccceeeecCCceeeeeeccc-cccCCCcCccceEEEEE
Q 039092 420 HVFNGWSEGKIYFPPTYKYSNNSDRYAGEDRHPKEKRRTPAWCDRILWYGRGLHQLSYVRGE-SRFSDHRPVYSIFLAEV 498 (535)
Q Consensus 420 ~vF~gf~Eg~I~F~PTYKy~~~Sd~Y~~~~~~~~~KkR~PAWCDRILw~g~~i~qlsY~~~e-~~~SDHrPV~A~F~v~v 498 (535)
.+|.||+|..|+|||||||+.++++|++ +.|.|+||||||||+++..+.+.+|.+.. +++||||||+|+|.+.+
T Consensus 254 ~~f~~f~E~~i~FpPTYKfd~gt~~ydt-----sdk~RiPsWtDRIl~~s~~~~p~sY~sip~l~~SDHrPV~a~~~~~i 328 (460)
T COG5411 254 NVFPGFKEPVITFPPTYKFDYGTDEYDT-----SDKGRIPSWTDRILYKSEQLTPHSYSSIPHLMISDHRPVYATFRAKI 328 (460)
T ss_pred ccccceecccccCCCceEeecCCccccc-----cccccCCchhhhhhhhccccccccccccCceeecCCCeEEEEEecce
Confidence 9999999999999999999999999985 77999999999999999999999999865 99999999999999999
Q ss_pred eeechhh
Q 039092 499 ESVNRSR 505 (535)
Q Consensus 499 ~~~~~~k 505 (535)
.+++..+
T Consensus 329 ~~~d~~~ 335 (460)
T COG5411 329 KVVDPSK 335 (460)
T ss_pred EEeCcch
Confidence 9999654
No 5
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.97 E-value=2.2e-31 Score=267.37 Aligned_cols=175 Identities=26% Similarity=0.388 Sum_probs=130.7
Q ss_pred ccCceEEEEEEEEcCeEEEEEcccCCCCCCCccH---------HHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceE
Q 039092 307 LGNKGSISISMSLHQTSFCFICSHLTSGQKEGDE---------LRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRI 377 (535)
Q Consensus 307 lGNKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~---------~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~i 377 (535)
++.||.+.+|++|+++.|||||+||.+++.+.+. ..|..++..||.+.. ..+..++++
T Consensus 65 wSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~-------------~~~~~~~~l 131 (356)
T PTZ00312 65 RSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECS-------------AFISPSDPL 131 (356)
T ss_pred ccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHh-------------hccCCCCcE
Confidence 7899999999999999999999999999976543 357888888887531 123457999
Q ss_pred EEeccccceeccCHH-H-HH------------HHHHhccHHHHHhhhHHHHHHHc-------------CCCCCCCccccc
Q 039092 378 IWLGDLNYRIALSYR-F-AK------------ALVEMRNWRALLENDQLRIEQRK-------------GHVFNGWSEGKI 430 (535)
Q Consensus 378 fw~GDLNYRI~l~~~-~-v~------------~li~~~~~~~LL~~DQL~~e~~~-------------g~vF~gf~Eg~I 430 (535)
|||||||||++...- + .+ .+-....|.+||++|||..|++. .+.|.++.|.+|
T Consensus 132 F~fGDfNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~fd~e~q~l~~~va~~s~~eLaE~pI 211 (356)
T PTZ00312 132 FIFGDFNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRFDLELQRLMDVVAQQSGVELAEFAI 211 (356)
T ss_pred EEeccceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhhhhhhhhhhhhhhhhhcccchhcccc
Confidence 999999999995321 1 11 11113468999999999999985 677889999999
Q ss_pred ccCCCCCCCCC----------------CcCCCCC----------------------C---------------CCCCCCcc
Q 039092 431 YFPPTYKYSNN----------------SDRYAGE----------------------D---------------RHPKEKRR 457 (535)
Q Consensus 431 ~F~PTYKy~~~----------------Sd~Y~~~----------------------~---------------~~~~~KkR 457 (535)
.||||||-... ...|... + ...+.+.|
T Consensus 212 ~FpPTYkrva~r~~~~~~~~~a~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~g~~d~i~~~~~l~~~ta~P~r~~~~~r 291 (356)
T PTZ00312 212 RFPPTYPRVAERTNTGAQIESAGANVAASVYGVKDVAAKLDNQQRKKAAKDLKGTADAILASVVLTRVTAIPHRNYCRDR 291 (356)
T ss_pred cCCCcchhhhhhcCCcchhhhcccccccchhcccccccccccccccchhhhccCccceeeeeeeeecccccCCcchhccc
Confidence 99999993321 0111100 0 02467899
Q ss_pred ccccccceeeecCCc----------------------------eeeeeeccccccCCCcCccceE
Q 039092 458 TPAWCDRILWYGRGL----------------------------HQLSYVRGESRFSDHRPVYSIF 494 (535)
Q Consensus 458 ~PAWCDRILw~g~~i----------------------------~qlsY~~~e~~~SDHrPV~A~F 494 (535)
+|||||||||...++ .+..|.+.++..+||.+|...|
T Consensus 292 ~pawcdrvl~~~~~~~~~~~~r~~~a~~~~~aa~~~~~~~~~~~~~~Y~s~~L~htDH~~V~~lF 356 (356)
T PTZ00312 292 LPAWCDRVLWNPAGLELMTGDRSRSASPQSAAASKGDQASGQSCRYAYRSIDLIHTDHDGVFLLF 356 (356)
T ss_pred chhhhheeeechhhhhhhcCccccCCCcchhhhccCCcccchhhhheeeeeeeeeccCccceecC
Confidence 999999999975432 1345788899999999999766
No 6
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.1e-29 Score=230.63 Aligned_cols=142 Identities=49% Similarity=0.789 Sum_probs=127.0
Q ss_pred CeEEEEeeeeeceEEEEEEeccccccccceeeeEEeecccccccCceEEEEEEEEcCeEEEEEcccCCCCCCCccHHHHH
Q 039092 265 RYCLVASKQMVGIFLTVWVKSDLRDSVRNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRN 344 (535)
Q Consensus 265 ~Y~~V~S~qmvGI~L~Vfvr~~l~~~I~~v~~s~VgtGi~G~lGNKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~rRN 344 (535)
.|+.+++.||+|+.+.+|++.++..++.+++++++++|+||++||||+|+++|.++++++|||||||+||.++.++ +||
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~~-~r~ 80 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVYE-RRN 80 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhHH-Hhh
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999987643 399
Q ss_pred HHHHHHHHhcCCCCccCCCCCCCCccccc-cceEEEeccccceeccC-HHHHHHHHHhccHHHHHhhh
Q 039092 345 SDVMEIIRKTRFPKVHGIGDENSPQTILE-HDRIIWLGDLNYRIALS-YRFAKALVEMRNWRALLEND 410 (535)
Q Consensus 345 ~D~~eIlr~~~F~~~~~~~~~~~p~~I~d-hD~ifw~GDLNYRI~l~-~~~v~~li~~~~~~~LL~~D 410 (535)
+|+.+|+..+.|+...... .|..+.. ||.|||+||||||+..+ +.++..++..+.|+.|+++|
T Consensus 81 ~d~~~i~~~~~~~~~~~~~---~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~~~~~l~~~d 145 (145)
T KOG0565|consen 81 EDYQEILNGLRFPSVSPAS---EPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVKSRDGLLEKD 145 (145)
T ss_pred ccHHHHHhhccccccCccc---ccccccccccEEEEecceeeeecCcccccchhhhhhcchhhhhccC
Confidence 9999999999998654322 2333333 89999999999999988 88889999999999888876
No 7
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=99.70 E-value=7.2e-18 Score=170.46 Aligned_cols=166 Identities=28% Similarity=0.458 Sum_probs=105.6
Q ss_pred ccCceEEEEEEEEcCeEEEEEcccCCCCCCCcc---------HHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceE
Q 039092 307 LGNKGSISISMSLHQTSFCFICSHLTSGQKEGD---------ELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRI 377 (535)
Q Consensus 307 lGNKGaVsvs~~i~~ts~cFVn~HLaAge~e~d---------~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~i 377 (535)
++.||-.-.++.|++..|.|||.||-....+-. -..|.+.+.-+|+++. +.-+..|.+
T Consensus 154 ~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~-------------~~~~~~~~~ 220 (391)
T KOG1976|consen 154 NQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELD-------------EEGLRNDAI 220 (391)
T ss_pred hhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHH-------------hhccCceEE
Confidence 577899999999999999999999966543211 1134444444444331 112345789
Q ss_pred EEeccccceeccC----HHHH-------H--------HHH---------------Hhcc------------HH-HHHhhh
Q 039092 378 IWLGDLNYRIALS----YRFA-------K--------ALV---------------EMRN------------WR-ALLEND 410 (535)
Q Consensus 378 fw~GDLNYRI~l~----~~~v-------~--------~li---------------~~~~------------~~-~LL~~D 410 (535)
|.|||||||++.. +-.+ . ++| +++. |. .++++|
T Consensus 221 fVfGdfNfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vEkk~FDyfnh~~f~d~~r~~~~~~d 300 (391)
T KOG1976|consen 221 FVFGDFNFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVEKKRFDYFNHDWFFDLGRGMVKRYD 300 (391)
T ss_pred EEecccccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEeehhhcchhhhHHHHHcCchhhhhcc
Confidence 9999999999832 1110 0 111 1111 11 233333
Q ss_pred -HHHHHHHcCCCCCC-CcccccccCCCCCCCCCCcCCCCCCCCCCCCccccccccceeeecCC----------ceeeeee
Q 039092 411 -QLRIEQRKGHVFNG-WSEGKIYFPPTYKYSNNSDRYAGEDRHPKEKRRTPAWCDRILWYGRG----------LHQLSYV 478 (535)
Q Consensus 411 -QL~~e~~~g~vF~g-f~Eg~I~F~PTYKy~~~Sd~Y~~~~~~~~~KkR~PAWCDRILw~g~~----------i~qlsY~ 478 (535)
+|. .|+. ..|..|.|||||.|..+...- ...++.|.||||||||+.... -..+.|.
T Consensus 301 kEl~-------nf~~kl~E~~i~FpPsypysed~~~~-----E~~m~TrcPAWcDRILmn~~a~eLv~~~e~e~~~~~Y~ 368 (391)
T KOG1976|consen 301 KELA-------NFAFKLKEETIFFPPSYPYSEDDSGK-----EEFMRTRCPAWCDRILMNDRANELVKHDEFEASGLYYG 368 (391)
T ss_pred hHHH-------HHHHHHhheeecCCCCCCCCcCccch-----HHHHhccChHhhhhhhcCccHHHHhhccccCcccceec
Confidence 222 2333 679999999999998753321 135689999999999997542 1234566
Q ss_pred c--cccccCCCcCccceEEEE
Q 039092 479 R--GESRFSDHRPVYSIFLAE 497 (535)
Q Consensus 479 ~--~e~~~SDHrPV~A~F~v~ 497 (535)
. .|.++.|||||+..|.+-
T Consensus 369 ~vg~e~c~GdHKpVfl~~~i~ 389 (391)
T KOG1976|consen 369 LVGEEKCVGDHKPVFLHASIC 389 (391)
T ss_pred ccccccccCCCcceEEEEeec
Confidence 4 478899999999888763
No 8
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.27 E-value=1.4e-05 Score=81.98 Aligned_cols=148 Identities=20% Similarity=0.250 Sum_probs=88.0
Q ss_pred ccccCceEEEEEEEEcCeEEEEEcccCCCCCC----CccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEe
Q 039092 305 GYLGNKGSISISMSLHQTSFCFICSHLTSGQK----EGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWL 380 (535)
Q Consensus 305 G~lGNKGaVsvs~~i~~ts~cFVn~HLaAge~----e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~ 380 (535)
..+.+||.+.+++.+.+..+.|+|+||.+... ..+...|..++.+|.+.+.-. .+...+.+|++
T Consensus 116 d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~------------~~~~~~pvIl~ 183 (283)
T TIGR03395 116 DNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSK------------NIPKDETVLIG 183 (283)
T ss_pred ccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhc------------cCCCCceEEEE
Confidence 34678999999999999999999999998532 112456899999987754210 12223569999
Q ss_pred ccccceeccCHHHHHHHHHhccHHHHHhhhHHHHHHHcCCCCCCCcccccccCCCCCCCCCCcCCCCCCCCCCCCccccc
Q 039092 381 GDLNYRIALSYRFAKALVEMRNWRALLENDQLRIEQRKGHVFNGWSEGKIYFPPTYKYSNNSDRYAGEDRHPKEKRRTPA 460 (535)
Q Consensus 381 GDLNYRI~l~~~~v~~li~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~F~PTYKy~~~Sd~Y~~~~~~~~~KkR~PA 460 (535)
||||-.=.. . .|..|+ ....... .+|. .|.|-|++..+.|.... . .+=.|.
T Consensus 184 GDfN~~~~s--~---------~~~~ml------~~l~~~~--p~~~------g~~~T~d~~~N~~a~~~---~-~~~~~~ 234 (283)
T TIGR03395 184 GDLNVNKGS--N---------EYHDMF------KTLNVSE--PRYV------GVPATWDATTNSIAKYY---Y-PKEEPE 234 (283)
T ss_pred eeCCCCCCC--H---------HHHHHH------HHhcccC--CCcC------CCCCCcCCCcCchhhhh---c-CCCCcc
Confidence 999976432 1 122221 1111110 1221 24556677666665321 1 123467
Q ss_pred cccceeeecCCc----------eeeee----ec-cccccCCCcCccce
Q 039092 461 WCDRILWYGRGL----------HQLSY----VR-GESRFSDHRPVYSI 493 (535)
Q Consensus 461 WCDRILw~g~~i----------~qlsY----~~-~e~~~SDHrPV~A~ 493 (535)
+-|+||.++... ..++. .. .-..+|||-||+|.
T Consensus 235 ~lDyvl~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sdh~~v~~~ 282 (283)
T TIGR03395 235 YLDYIFVSKSHAQPPVWQNKVLDPKSVTSWFKKYTYDDFSDHYPVYGF 282 (283)
T ss_pred eEEEEEEECCCCCCccccceEEeccccccccccccccccccccceeee
Confidence 999999985421 11111 11 13468999999874
No 9
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.12 E-value=8.2e-07 Score=83.28 Aligned_cols=98 Identities=19% Similarity=0.296 Sum_probs=53.2
Q ss_pred eceEEEEEEeccccccccceeeeEEeeccc---ccccCceEEEEEEEEcCeEEEEEcccCCCCCCCccHHHHHHHHHHHH
Q 039092 275 VGIFLTVWVKSDLRDSVRNMKVSCVGRGLM---GYLGNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEII 351 (535)
Q Consensus 275 vGI~L~Vfvr~~l~~~I~~v~~s~VgtGi~---G~lGNKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~rRN~D~~eIl 351 (535)
.+..+.|+.|.++...+........+.+.. ....+++.+.+++. +..|+++++|+.+... .|..+..+++
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~-----~~~~~~~~~~ 144 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSND-----ERQEQWRELL 144 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHH-----HHHHHHHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccch-----hhhhhhhhhh
Confidence 556677788887655444443333233322 22445666666666 9999999999998532 2332233333
Q ss_pred HhcCCCCccCCCCCCCCccccccceEEEeccccceeccC
Q 039092 352 RKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYRIALS 390 (535)
Q Consensus 352 r~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI~l~ 390 (535)
..+.- ... ..+ ...+|++||||.+....
T Consensus 145 ~~~~~--~~~----~~~-----~~~~iv~GDfN~~~~~~ 172 (249)
T PF03372_consen 145 ARIQK--IYA----DNP-----NEPVIVMGDFNSRPDSR 172 (249)
T ss_dssp HHHHH--HHH----TSS-----CCEEEEEEE-SS-BSSG
T ss_pred hhhhh--ccc----ccc-----cceEEEEeecccCCccc
Confidence 32210 000 000 01699999999998743
No 10
>PRK05421 hypothetical protein; Provisional
Probab=98.05 E-value=3.9e-05 Score=77.48 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=73.6
Q ss_pred ceEEEEEEEE-cCeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEeccccceec
Q 039092 310 KGSISISMSL-HQTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYRIA 388 (535)
Q Consensus 310 KGaVsvs~~i-~~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI~ 388 (535)
||++.+.+.+ .+..|.++|+||.+.... ...|..++..|.+.+. . ....+|++||||-.-.
T Consensus 135 r~~l~a~~~~~~g~~l~v~ntHl~~~~~~--~~~r~~q~~~l~~~~~--~--------------~~~p~Il~GDFN~~~~ 196 (263)
T PRK05421 135 KSALITEYPLPNGRTLLVVNIHAINFSLG--VDVYSKQLEPIGDQIA--H--------------HSGPVILAGDFNTWSR 196 (263)
T ss_pred ceeEEEEEEeCCCCEEEEEEECccccCcC--hHHHHHHHHHHHHHHH--h--------------CCCCEEEEcccccCcc
Confidence 7899999988 567899999999865322 2457778777766431 0 0135899999993111
Q ss_pred cCHHHHHHHHHhccHHHHHhhhHHHHHHHcCCCCCCCcccccccCCCCCCCCCCcCCCCCCCCCCCCccccccccceeee
Q 039092 389 LSYRFAKALVEMRNWRALLENDQLRIEQRKGHVFNGWSEGKIYFPPTYKYSNNSDRYAGEDRHPKEKRRTPAWCDRILWY 468 (535)
Q Consensus 389 l~~~~v~~li~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~F~PTYKy~~~Sd~Y~~~~~~~~~KkR~PAWCDRILw~ 468 (535)
..... + .++... . |+.. .+|++.-.+ ..+ ..|+ |+||..
T Consensus 197 ~~~~~---------l------~~~~~~--~-----~l~~--~~~~~~~~~----~~~---------~~~I----D~I~~~ 235 (263)
T PRK05421 197 KRMNA---------L------KRFARE--L-----GLKE--VRFTDDQRR----RAF---------GRPL----DFVFYR 235 (263)
T ss_pred cchHH---------H------HHHHHH--c-----CCCc--cCcCCcccc----ccc---------CCCc----ceEEEC
Confidence 00000 1 111111 0 1111 134332211 001 1233 999974
Q ss_pred cCCceeeeeeccccccCCCcCccceEEEE
Q 039092 469 GRGLHQLSYVRGESRFSDHRPVYSIFLAE 497 (535)
Q Consensus 469 g~~i~qlsY~~~e~~~SDHrPV~A~F~v~ 497 (535)
++...++...+...|||+||.|.|.+.
T Consensus 236 --~~~v~~~~v~~~~~SDH~Pv~a~l~l~ 262 (263)
T PRK05421 236 --GLNVSKASVLVTRASDHNPLLVEFSLK 262 (263)
T ss_pred --CcEEEEEEcCCCCCCCccCEEEEEEec
Confidence 566666665567899999999998763
No 11
>PRK11756 exonuclease III; Provisional
Probab=96.93 E-value=0.0069 Score=60.83 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=21.7
Q ss_pred CceEEEEEEEEcCeEEEEEcccCCCCC
Q 039092 309 NKGSISISMSLHQTSFCFICSHLTSGQ 335 (535)
Q Consensus 309 NKGaVsvs~~i~~ts~cFVn~HLaAge 335 (535)
..+.+.+.+...+..|.|+|+|++.+.
T Consensus 88 ~~r~l~~~i~~~~g~~~v~n~y~P~~~ 114 (268)
T PRK11756 88 QRRIIMATIPTPNGNLTVINGYFPQGE 114 (268)
T ss_pred cCCEEEEEEEcCCCCEEEEEEEecCCC
Confidence 357888888876556999999998875
No 12
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.69 E-value=0.014 Score=57.30 Aligned_cols=31 Identities=32% Similarity=0.639 Sum_probs=21.2
Q ss_pred EEEecccCCCCCCCCCCc-hhhcCCCCCCcEEEE
Q 039092 93 FVATWNVAGKSPPSYLNL-EDWLQTSPPADIYVL 125 (535)
Q Consensus 93 fvgTWNVgG~~P~~~Ldl-~dwL~~~~~aDIYVl 125 (535)
-|.||||.|...... .+ .+||.... +||.+|
T Consensus 2 ri~t~Nv~g~~~~~~-~~~~~~l~~~~-~DIv~L 33 (255)
T TIGR00633 2 KIISWNVNGLRARLH-KLFLDWLKEEQ-PDVLCL 33 (255)
T ss_pred EEEEEecccHHHHhh-ccHHHHHHhcC-CCEEEE
Confidence 478999999644322 33 67777654 588887
No 13
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=96.39 E-value=0.023 Score=58.16 Aligned_cols=62 Identities=21% Similarity=0.403 Sum_probs=45.8
Q ss_pred CceEEEEEEEEc-CeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEecccc---
Q 039092 309 NKGSISISMSLH-QTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLN--- 384 (535)
Q Consensus 309 NKGaVsvs~~i~-~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLN--- 384 (535)
-.|++-+.+... +..|-+||.||.=.+ ..|-++...|+....++. -..++++||||
T Consensus 118 ~Rgal~a~~~~~~g~~l~V~~~HL~l~~-----~~R~~Q~~~L~~~~~l~~---------------~~p~vl~GDFN~~p 177 (259)
T COG3568 118 PRGALLAEIELPGGKPLRVINAHLGLSE-----ESRLRQAAALLALAGLPA---------------LNPTVLMGDFNNEP 177 (259)
T ss_pred CceeEEEEEEcCCCCEEEEEEEeccccH-----HHHHHHHHHHHhhccCcc---------------cCceEEEccCCCCC
Confidence 378999999885 779999999998543 458888888887432221 12689999999
Q ss_pred ----ceeccC
Q 039092 385 ----YRIALS 390 (535)
Q Consensus 385 ----YRI~l~ 390 (535)
||+...
T Consensus 178 ~s~~yr~~~~ 187 (259)
T COG3568 178 GSAEYRLAAR 187 (259)
T ss_pred CCccceeccC
Confidence 777643
No 14
>PTZ00297 pantothenate kinase; Provisional
Probab=95.99 E-value=0.036 Score=68.58 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=41.4
Q ss_pred ccCceEEEEEEEEc----C-eEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEec
Q 039092 307 LGNKGSISISMSLH----Q-TSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLG 381 (535)
Q Consensus 307 lGNKGaVsvs~~i~----~-ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~G 381 (535)
..+||.+-+.+.+. + ..+-|+|+||.+..... -|.+++.++.+-+. ..+.... ....+.....+|+.|
T Consensus 130 ~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~~---~R~~Q~~ql~~~i~-~~i~~~~---~~~~~~~~~PvILaG 202 (1452)
T PTZ00297 130 SVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSLP---STSSQVQETRRFVE-SVIANVY---EQNNDGAEIPFVIAG 202 (1452)
T ss_pred ccccceEEEEEEccccCCCCceEEEEEeCCCCCCCcc---hHHHHHHHHHHHHH-Hhhhhhc---ccccCCCCCCEEEEe
Confidence 35899999999884 2 57999999999875432 23444444433211 0000000 001122335799999
Q ss_pred cccc
Q 039092 382 DLNY 385 (535)
Q Consensus 382 DLNY 385 (535)
|||=
T Consensus 203 DFN~ 206 (1452)
T PTZ00297 203 DFNI 206 (1452)
T ss_pred eCCC
Confidence 9993
No 15
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=93.28 E-value=0.89 Score=46.12 Aligned_cols=31 Identities=23% Similarity=0.528 Sum_probs=24.8
Q ss_pred EEecccCCCCCCCCCCchhhcCCCCCCcEEEE
Q 039092 94 VATWNVAGKSPPSYLNLEDWLQTSPPADIYVL 125 (535)
Q Consensus 94 vgTWNVgG~~P~~~Ldl~dwL~~~~~aDIYVl 125 (535)
|.||||.|..-.....+.+||..++ +||-.|
T Consensus 3 i~swNVNgir~~~~~~~~~~l~~~~-~DIicl 33 (250)
T PRK13911 3 LISWNVNGLRACMTKGFMDFFNSVD-ADVFCI 33 (250)
T ss_pred EEEEEeCChhHhhhhhHHHHHHhcC-CCEEEE
Confidence 6899999987655456889998754 899887
No 16
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=89.42 E-value=1.3 Score=46.10 Aligned_cols=62 Identities=21% Similarity=0.378 Sum_probs=40.9
Q ss_pred EEEEEEcCeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEeccccceec
Q 039092 314 SISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYRIA 388 (535)
Q Consensus 314 svs~~i~~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI~ 388 (535)
.+-..|.+..+||.++||.+-..- ..+|.+.+.+.+.+++= -+ .++-.-.||+-||+|.|=.
T Consensus 196 I~Ev~v~G~Kl~l~tsHLEStr~h--~P~r~~qF~~~~~k~~E-aI----------e~lPnA~ViFGGD~NlrD~ 257 (349)
T KOG2756|consen 196 IVEVNVSGNKLCLMTSHLESTRGH--APERMNQFKMVLKKMQE-AI----------ESLPNATVIFGGDTNLRDR 257 (349)
T ss_pred EEEEeecCceEEEEeccccCCCCC--ChHHHHHHHHHHHHHHH-HH----------HhCCCceEEEcCcccchhh
Confidence 345567788899999999997642 35688877766665420 00 0111235899999999854
No 17
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=87.42 E-value=1.2 Score=44.33 Aligned_cols=30 Identities=27% Similarity=0.560 Sum_probs=20.3
Q ss_pred EEecccCCCCCCCCCCchhhcCCCCCCcEEEE
Q 039092 94 VATWNVAGKSPPSYLNLEDWLQTSPPADIYVL 125 (535)
Q Consensus 94 vgTWNVgG~~P~~~Ldl~dwL~~~~~aDIYVl 125 (535)
|.||||.|-.... -.+-+||.... |||.+|
T Consensus 3 i~t~Ni~g~~~~~-~~~~~~l~~~~-~DIi~L 32 (254)
T TIGR00195 3 IISWNVNGLRARL-HKGLAWLKENQ-PDVLCL 32 (254)
T ss_pred EEEEEcCcHHHhH-HHHHHHHHhcC-CCEEEE
Confidence 7899999854221 12577777754 688887
No 18
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=85.55 E-value=2.2 Score=45.88 Aligned_cols=200 Identities=21% Similarity=0.250 Sum_probs=106.2
Q ss_pred EEeeeeeceEEEEEEeccccccccce-----eeeEEeecccccccCceEEEEEEEEcCeEEEEEcccCCCCC---CCccH
Q 039092 269 VASKQMVGIFLTVWVKSDLRDSVRNM-----KVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICSHLTSGQ---KEGDE 340 (535)
Q Consensus 269 V~S~qmvGI~L~Vfvr~~l~~~I~~v-----~~s~VgtGi~G~lGNKGaVsvs~~i~~ts~cFVn~HLaAge---~e~d~ 340 (535)
..|.-| |-.|+||-|-.+..-..+. .-..+=.| -..|-||--..++.+.+..+.+-|+||-|-- ++...
T Consensus 73 FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rG--DWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL 149 (422)
T KOG3873|consen 73 FHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHRG--DWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYL 149 (422)
T ss_pred hhcccc-cCceEEeecCchhhhhhhccccCCccceeeec--cccccceeEEEEEeeCCEEeeeeehhccccccccCchhh
Confidence 456666 7888999887654322211 11112122 3367798888888899999999999998732 23344
Q ss_pred HHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEeccccceec-cCHHHHH--HHHHhccHHHHHhhhHHHHHHH
Q 039092 341 LRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYRIA-LSYRFAK--ALVEMRNWRALLENDQLRIEQR 417 (535)
Q Consensus 341 ~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI~-l~~~~v~--~li~~~~~~~LL~~DQL~~e~~ 417 (535)
..|-.+..++-+-++ .+-...|.||..||||-+=. ++..-.. .|+ ..|..|. -||.-..--
T Consensus 150 ~HR~~QAwdlaqfi~-------------~t~q~~~vVI~~GDLN~~P~dl~~~ll~~a~l~--daw~~~h-~~q~e~~~~ 213 (422)
T KOG3873|consen 150 CHRVAQAWDLAQFIR-------------ATRQNADVVILAGDLNMQPQDLGHKLLLSAGLV--DAWTSLH-LDQCESDSF 213 (422)
T ss_pred hHHHHHHHHHHHHHH-------------HHhcCCcEEEEecCCCCCccccceeeeeccchh--hhHhhhc-hhhhcCccc
Confidence 567776666543221 01224589999999997743 4432211 122 1233332 233322111
Q ss_pred cCCCCCCCcccccccCCCCCCCCCCcCCCCCCCCCCCCccccc----cccceeeecCCc--eeeeee----c--c-cccc
Q 039092 418 KGHVFNGWSEGKIYFPPTYKYSNNSDRYAGEDRHPKEKRRTPA----WCDRILWYGRGL--HQLSYV----R--G-ESRF 484 (535)
Q Consensus 418 ~g~vF~gf~Eg~I~F~PTYKy~~~Sd~Y~~~~~~~~~KkR~PA----WCDRILw~g~~i--~qlsY~----~--~-e~~~ 484 (535)
+..-|++..||. |- +.--+.|. +..+|.|- =-|-||+++... +.-.|. + + +..+
T Consensus 214 r~s~~~~l~~g~-----tc--d~~~N~y~------~aqk~~ddp~~~RiDYvl~k~~~~~~~~a~~~~t~~rvP~~d~s~ 280 (422)
T KOG3873|consen 214 RLSEDKELVEGN-----TC--DSPLNCYT------SAQKREDDPLGKRIDYVLVKPGDCNAKIAEVEFTEPRVPGEDCSY 280 (422)
T ss_pred ccchhhhhhcCC-----cc--cCcchhhh------HHHhCCCCccceeeeEEEEcCcceEEEeeeEEecCCCCCCCCCCc
Confidence 122234444554 11 11112232 11111111 147788886532 222222 1 2 3578
Q ss_pred CCCcCccceEEEEEee
Q 039092 485 SDHRPVYSIFLAEVES 500 (535)
Q Consensus 485 SDHrPV~A~F~v~v~~ 500 (535)
|||--+.|++.+.-..
T Consensus 281 SDH~Al~a~L~I~~~~ 296 (422)
T KOG3873|consen 281 SDHEALMATLKIFKQP 296 (422)
T ss_pred cchhhheeEEEeecCC
Confidence 9999999999887544
No 19
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=85.48 E-value=1.4 Score=48.91 Aligned_cols=94 Identities=20% Similarity=0.185 Sum_probs=58.2
Q ss_pred EEEEEeccccccccceee--eEEeecccccccCceEEEEEEEEcCe---EEEEEcccCCCCCCCccHHHHHHHHHHHHHh
Q 039092 279 LTVWVKSDLRDSVRNMKV--SCVGRGLMGYLGNKGSISISMSLHQT---SFCFICSHLTSGQKEGDELRRNSDVMEIIRK 353 (535)
Q Consensus 279 L~Vfvr~~l~~~I~~v~~--s~VgtGi~G~lGNKGaVsvs~~i~~t---s~cFVn~HLaAge~e~d~~rRN~D~~eIlr~ 353 (535)
++|+-++++-..+.+..+ .-.+.|++..-.=++.|+..|++.+. -++..|+||-=+...+++ |-.++.-||..
T Consensus 204 ~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~v--rL~Q~~iiL~~ 281 (495)
T KOG2338|consen 204 VAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDV--RLAQVYIILAE 281 (495)
T ss_pred EEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccch--hhHHHHHHHHH
Confidence 334445544333333222 23556666543336677777776655 899999999999887776 67778888775
Q ss_pred cC-CCCccCCCCCCCCccccccceEEEeccccc
Q 039092 354 TR-FPKVHGIGDENSPQTILEHDRIIWLGDLNY 385 (535)
Q Consensus 354 ~~-F~~~~~~~~~~~p~~I~dhD~ifw~GDLNY 385 (535)
+. |.. ..+ .|=.||++||||-
T Consensus 282 ~~~~~~-------~~~----~~~pi~l~GDfNt 303 (495)
T KOG2338|consen 282 LEKMSK-------SSK----SHWPIFLCGDFNT 303 (495)
T ss_pred HHHHHh-------hcc----cCCCeEEecCCCC
Confidence 42 110 000 3457999999985
No 20
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=84.84 E-value=0.3 Score=42.03 Aligned_cols=33 Identities=24% Similarity=0.174 Sum_probs=17.4
Q ss_pred cccccceeeecCCcee-eeeeccccccCCCcCcc
Q 039092 459 PAWCDRILWYGRGLHQ-LSYVRGESRFSDHRPVY 491 (535)
Q Consensus 459 PAWCDRILw~g~~i~q-lsY~~~e~~~SDHrPV~ 491 (535)
.+-=|+||....-... ..-.......|||+||.
T Consensus 86 ~s~iD~~~~s~~~~~~~~~~~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 86 GSRIDLILTSDNLLSWCVWVISSDDSGSDHCPIT 119 (119)
T ss_dssp EE--EEEEEECCGCCCEEEEEETTSSSSSB--EE
T ss_pred CceEEEEEECChHHhcCcEEEeCCCCCCCccCCC
Confidence 5557889887653333 11122356789999984
No 21
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=75.50 E-value=12 Score=38.84 Aligned_cols=57 Identities=16% Similarity=0.295 Sum_probs=33.7
Q ss_pred EEEEEEEEcCe---EEEEEcccCCCCCCCccHHHHHHHHHH-HHHhcCCCCccCCCCCCCCccccccceEEEecccccee
Q 039092 312 SISISMSLHQT---SFCFICSHLTSGQKEGDELRRNSDVME-IIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYRI 387 (535)
Q Consensus 312 aVsvs~~i~~t---s~cFVn~HLaAge~e~d~~rRN~D~~e-Ilr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI 387 (535)
...++|+...+ .|.+|++|+.... ..++...+.+ ++.... .. ..+-||++||||=--
T Consensus 129 P~~~~F~~~~~~~~~F~li~~H~~p~~----~~~e~~aL~~v~~~~~~--------------~~-~~~~villGDFNa~~ 189 (276)
T smart00476 129 PFVVKFSSPSTAVKEFVIVPLHTTPEA----AVAEIDALYDVYLDVRQ--------------KW-GTEDVIFMGDFNAGC 189 (276)
T ss_pred ceEEEEEeCCCCCccEEEEEecCChHH----HHHHHHHHHHHHHHHHH--------------hh-ccCCEEEEccCCCCC
Confidence 45667776665 7999999998853 2234433233 222110 00 125599999999743
No 22
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=71.27 E-value=6.5 Score=45.17 Aligned_cols=63 Identities=16% Similarity=0.244 Sum_probs=39.4
Q ss_pred eEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcC-CCCccCCCCCCCCccccccceEEEeccccceeccCHHHHHHHHHh
Q 039092 322 TSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTR-FPKVHGIGDENSPQTILEHDRIIWLGDLNYRIALSYRFAKALVEM 400 (535)
Q Consensus 322 ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~-F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI~l~~~~v~~li~~ 400 (535)
..||++|+||..+....+ -|..+...|++.+. +.. . . .-.||++||||- .+...+-+++..
T Consensus 417 ~~l~VaNTHL~~~p~~~d--vRl~Q~~~Ll~~l~~~~~--------~-~----~~PvIlcGDFNS---~P~S~vy~lLt~ 478 (606)
T PLN03144 417 QLLCVANTHIHANQELKD--VKLWQVHTLLKGLEKIAA--------S-A----DIPMLVCGDFNS---VPGSAPHCLLAT 478 (606)
T ss_pred cEEEEEEeeeccCCccch--hHHHHHHHHHHHHHHHhh--------c-C----CCceEEeccCCC---CCCChhhhhhhc
Confidence 369999999977765433 35666666666542 100 0 0 124899999995 445566677765
Q ss_pred cc
Q 039092 401 RN 402 (535)
Q Consensus 401 ~~ 402 (535)
+.
T Consensus 479 G~ 480 (606)
T PLN03144 479 GK 480 (606)
T ss_pred CC
Confidence 53
No 23
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=61.97 E-value=3.9 Score=41.46 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=31.2
Q ss_pred EEEEEEEcCeEEEEEcccCCCCCCCc-cHHHH---HHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEeccccce
Q 039092 313 ISISMSLHQTSFCFICSHLTSGQKEG-DELRR---NSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYR 386 (535)
Q Consensus 313 Vsvs~~i~~ts~cFVn~HLaAge~e~-d~~rR---N~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYR 386 (535)
-.|...+. .|.++|+..+.+.... ....| ..++.+.+..+. ....+||+||||=.
T Consensus 90 R~I~~~~~--~~~l~nvY~Pn~~~~~~r~~~K~~~~~~~~~~l~~l~-----------------~~~~~Ii~GD~Nva 148 (250)
T PRK13911 90 RVITCEFE--SFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALE-----------------LKKPVIVCGDLNVA 148 (250)
T ss_pred CEEEEEEC--CEEEEEEEecCCCCCCcchHHHHHHHHHHHHHHHhcc-----------------cCCCEEEEccccCC
Confidence 33444453 5899999999987432 11122 233444444320 11468999999943
No 24
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.85 E-value=5.3 Score=42.20 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=38.3
Q ss_pred cCceEEEEEEEE-cCeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEeccccc
Q 039092 308 GNKGSISISMSL-HQTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNY 385 (535)
Q Consensus 308 GNKGaVsvs~~i-~~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNY 385 (535)
+-||++.+.-.. +++.+..+|.|..--.-..+. .| ++..++.+.+. ... .-+|+.||||=
T Consensus 173 ~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~~~-~~-~ql~~l~~~i~--~~~--------------gpvIlaGDfNa 233 (309)
T COG3021 173 LPKSALATAYPLPDGTELTVVALHAVNFPVGTDP-QR-AQLLELGDQIA--GHS--------------GPVILAGDFNA 233 (309)
T ss_pred CCccceeEEEEcCCCCEEEEEeeccccccCCccH-HH-HHHHHHHHHHH--cCC--------------CCeEEeecCCC
Confidence 458877777665 578999999999843332233 34 55666555431 000 24899999995
No 25
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=41.38 E-value=54 Score=34.19 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=34.8
Q ss_pred cCceEEEEEEEEcCeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEecccc
Q 039092 308 GNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLN 384 (535)
Q Consensus 308 GNKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLN 384 (535)
.....+++++ .+ +.|.+.||.+... . .|.+-+..|..-.+ +. .+ +.-++++||||
T Consensus 140 ~~Rpilgi~i--~~--~~ffstH~~a~~~-~---da~aiV~~I~~~f~-~~--------~~-----~~pw~I~GDFN 194 (271)
T PRK15251 140 ASRPIIGIRI--GN--DVFFSIHALANGG-T---DAGAIVRAVHNFFR-PN--------MR-----HINWMIAGDFN 194 (271)
T ss_pred cccceEEEEe--cC--eEEEEeeecCCCC-c---cHHHHHHHHHHHHh-hc--------cC-----CCCEEEeccCC
Confidence 3566677765 33 7899999999842 1 26666666665431 00 11 24589999999
No 26
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.03 E-value=21 Score=39.19 Aligned_cols=18 Identities=39% Similarity=0.693 Sum_probs=14.9
Q ss_pred ccccceEEEeccccceec
Q 039092 371 ILEHDRIIWLGDLNYRIA 388 (535)
Q Consensus 371 I~dhD~ifw~GDLNYRI~ 388 (535)
+..++.||+=||||||==
T Consensus 349 L~~S~LvIFKGDLNYRKL 366 (434)
T KOG3870|consen 349 LQKSSLVIFKGDLNYRKL 366 (434)
T ss_pred HhhCcEEEEeccccHHHH
Confidence 446899999999999853
No 27
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.68 E-value=22 Score=34.75 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=29.3
Q ss_pred eEEEEEcccCCCCCCCccH--HHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEecccccee
Q 039092 322 TSFCFICSHLTSGQKEGDE--LRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYRI 387 (535)
Q Consensus 322 ts~cFVn~HLaAge~e~d~--~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI 387 (535)
..+.++|+|++++...+.+ ..|.+.+..+.+.+. . .+.....+|++||||--.
T Consensus 100 ~~~~i~~vy~p~~~~~~~~~~~~r~~~~~~l~~~~~--~-----------~~~~~~~~Il~GDFN~~~ 154 (255)
T TIGR00633 100 DGFTVVNVYVPNGGSRGLERLEYKLQFWDALFQYYE--K-----------ELDAGKPVIICGDMNVAH 154 (255)
T ss_pred CCEEEEEEEccCCCCCCchhHHHHHHHHHHHHHHHH--H-----------HHhcCCcEEEEeecccCC
Confidence 3688999999887632221 234444443333210 0 001124689999999654
No 28
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=24.14 E-value=17 Score=37.59 Aligned_cols=30 Identities=40% Similarity=0.784 Sum_probs=23.5
Q ss_pred EEecccCCCCCCCCCCchhhcCCCCCCcEEEE
Q 039092 94 VATWNVAGKSPPSYLNLEDWLQTSPPADIYVL 125 (535)
Q Consensus 94 vgTWNVgG~~P~~~Ldl~dwL~~~~~aDIYVl 125 (535)
+.||||.|.----+. +-+||....| ||-.|
T Consensus 3 I~SwNVNgiRar~~~-~~~~l~~~~p-DVlcl 32 (261)
T COG0708 3 IASWNVNGLRARLKK-LLDWLEEEQP-DVLCL 32 (261)
T ss_pred eEEEehhhHHHHHHH-HHHHHHHhCC-CEEEE
Confidence 589999996443333 8999999877 99877
No 29
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=24.04 E-value=44 Score=31.33 Aligned_cols=24 Identities=38% Similarity=0.718 Sum_probs=16.7
Q ss_pred cCCCCCC-CCCC--cCCCCCCCCCCCCccccccc
Q 039092 432 FPPTYKY-SNNS--DRYAGEDRHPKEKRRTPAWC 462 (535)
Q Consensus 432 F~PTYKy-~~~S--d~Y~~~~~~~~~KkR~PAWC 462 (535)
=||-||| +++. ..|.| .-|+|.|-
T Consensus 93 ~paKYky~dp~G~~~TWTG-------rGR~P~wi 119 (135)
T PRK10947 93 RPAKYSYVDENGETKTWTG-------QGRTPAVI 119 (135)
T ss_pred CCCCCcccCCCCCcCcccC-------CCCCCHHH
Confidence 4789999 5443 45654 46999995
No 30
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=22.99 E-value=32 Score=34.09 Aligned_cols=13 Identities=31% Similarity=0.462 Sum_probs=10.7
Q ss_pred EEEEEcccCCCCC
Q 039092 323 SFCFICSHLTSGQ 335 (535)
Q Consensus 323 s~cFVn~HLaAge 335 (535)
.|.++|+|++++.
T Consensus 98 ~~~l~~~~~p~~~ 110 (254)
T TIGR00195 98 SFLVINGYFPNGS 110 (254)
T ss_pred CEEEEEEEccCCC
Confidence 4789999999864
No 31
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=21.37 E-value=19 Score=23.69 Aligned_cols=14 Identities=50% Similarity=1.025 Sum_probs=10.3
Q ss_pred HHHhhhccCCCCCc
Q 039092 7 LVKKWFNIKNRAED 20 (535)
Q Consensus 7 v~~kw~n~~~~~~~ 20 (535)
|-.|||||.+|--|
T Consensus 8 vtskwfnidnkivd 21 (24)
T PF08053_consen 8 VTSKWFNIDNKIVD 21 (24)
T ss_pred EeeeeEeccCeecc
Confidence 45699999877544
No 32
>PRK09806 tryptophanase leader peptide; Provisional
Probab=20.70 E-value=18 Score=24.17 Aligned_cols=14 Identities=50% Similarity=1.025 Sum_probs=10.0
Q ss_pred HHHhhhccCCCCCc
Q 039092 7 LVKKWFNIKNRAED 20 (535)
Q Consensus 7 v~~kw~n~~~~~~~ 20 (535)
|-.|||||.+|--|
T Consensus 8 vtskwfnidnkivd 21 (26)
T PRK09806 8 VTSKWFNIDNKIVD 21 (26)
T ss_pred EeeeEEeccCeeec
Confidence 44689999876544
Done!