Query 039092
Match_columns 535
No_of_seqs 304 out of 1040
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 10:07:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 8.5E-88 2.9E-92 689.9 33.2 230 264-503 77-308 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 9E-86 3.1E-90 675.9 28.6 229 265-499 80-314 (316)
3 2xsw_A 72 kDa inositol polypho 100.0 2.6E-77 8.9E-82 622.7 32.0 232 265-503 86-327 (357)
4 1i9z_A Synaptojanin, phosphati 100.0 5.7E-77 1.9E-81 618.0 33.1 229 264-509 100-328 (347)
5 2imq_X Salivary nitrophorin; f 100.0 4.6E-62 1.6E-66 490.2 21.9 206 264-498 71-282 (282)
6 4gz1_A Tyrosyl-DNA phosphodies 98.7 1.7E-07 5.8E-12 87.6 12.3 66 305-386 97-162 (256)
7 4fva_A 5'-tyrosyl-DNA phosphod 98.5 1.1E-06 3.7E-11 82.4 11.6 68 307-387 103-170 (256)
8 3teb_A Endonuclease/exonucleas 98.4 2.3E-06 7.7E-11 81.4 13.7 62 307-387 120-181 (266)
9 1zwx_A SMCL, sphingomyelinase- 98.4 1E-06 3.6E-11 86.0 10.7 70 307-388 128-201 (301)
10 4f1h_A Tyrosyl-DNA phosphodies 98.4 8E-07 2.7E-11 81.4 8.7 62 309-386 95-156 (250)
11 3i41_A Beta-hemolysin; beta to 98.3 9.5E-07 3.3E-11 88.7 7.7 71 306-388 146-220 (317)
12 4gew_A 5'-tyrosyl-DNA phosphod 98.2 7.7E-06 2.6E-10 84.4 11.0 65 309-386 211-275 (362)
13 1ako_A Exonuclease III; AP-end 98.1 9.7E-06 3.3E-10 77.1 10.6 68 308-388 87-157 (268)
14 2ddr_A Sphingomyelin phosphodi 98.1 1.1E-05 3.8E-10 78.7 11.3 69 307-387 128-200 (306)
15 3l1w_A Uncharacterized protein 98.1 2.3E-05 7.9E-10 74.6 13.1 62 307-386 107-170 (257)
16 3g6s_A Putative endonuclease/e 98.0 2E-05 6.9E-10 75.6 10.9 61 307-385 113-175 (267)
17 3mpr_A Putative endonuclease/e 97.6 0.00019 6.6E-09 70.7 10.2 62 308-386 118-182 (298)
18 2jc4_A Exodeoxyribonuclease II 97.2 0.00099 3.4E-08 62.6 9.1 57 317-388 94-152 (256)
19 1wdu_A TRAS1 ORF2P; four-layer 96.8 0.0055 1.9E-07 58.1 10.4 59 308-387 101-159 (245)
20 2o3h_A DNA-(apurinic or apyrim 96.5 0.0038 1.3E-07 60.2 6.5 35 461-495 248-284 (285)
21 1vyb_A ORF2 contains A reverse 96.5 0.005 1.7E-07 57.0 7.1 54 312-387 97-150 (238)
22 4b8c_D Glucose-repressible alc 96.2 0.0011 3.9E-08 74.1 1.5 64 320-387 545-608 (727)
23 2j63_A AP-endonuclease; base e 96.1 0.01 3.4E-07 63.7 8.1 34 462-495 430-465 (467)
24 2jc5_A Exodeoxyribonuclease; h 95.8 0.0051 1.7E-07 57.8 3.8 37 460-496 218-256 (259)
25 1hd7_A DNA-(apurinic or apyrim 95.8 0.0097 3.3E-07 59.2 5.7 52 322-387 163-215 (318)
26 2voa_A AF_EXO, XTHA, exodeoxyr 94.6 0.053 1.8E-06 51.0 6.6 35 461-495 216-256 (257)
27 3g91_A MTH0212, exodeoxyribonu 94.5 0.066 2.3E-06 51.1 7.1 33 92-125 4-36 (265)
28 2a40_B Deoxyribonuclease-1; WA 92.4 0.15 5.3E-06 48.7 5.8 26 310-335 111-139 (260)
29 2ei9_A Non-LTR retrotransposon 91.9 0.66 2.2E-05 44.6 9.6 56 309-387 77-132 (240)
30 3ngq_A CCR4-NOT transcription 83.4 1.1 3.7E-05 47.1 5.2 75 321-401 194-269 (398)
31 1sr4_B CDT B, cytolethal diste 74.9 4 0.00014 40.6 6.0 59 309-384 121-179 (261)
32 2f1n_A CDT B, cytolethal diste 50.6 13 0.00043 37.2 4.2 60 309-386 130-189 (262)
33 3pt1_A UPF0364 protein YMR027W 28.0 12 0.0004 40.3 -0.2 17 371-387 374-390 (471)
34 4fva_A 5'-tyrosyl-DNA phosphod 23.5 21 0.00073 32.3 0.7 37 89-126 11-51 (256)
35 2ei9_A Non-LTR retrotransposon 22.6 12 0.00043 35.5 -1.1 34 91-126 7-40 (240)
36 2a40_B Deoxyribonuclease-1; WA 22.1 22 0.00076 33.5 0.5 12 483-494 248-259 (260)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=8.5e-88 Score=689.87 Aligned_cols=230 Identities=41% Similarity=0.741 Sum_probs=216.4
Q ss_pred CCeEEEEeeeeeceEEEEEEeccccccccceeeeEEeecccccccCceEEEEEEEEcCeEEEEEcccCCCCCCCccHHHH
Q 039092 264 SRYCLVASKQMVGIFLTVWVKSDLRDSVRNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRR 343 (535)
Q Consensus 264 ~~Y~~V~S~qmvGI~L~Vfvr~~l~~~I~~v~~s~VgtGi~G~lGNKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~rR 343 (535)
.+|++|+++|||||+|+||||+++.++|++|++++||||+||++||||||+|||.+++|+|||||||||||+++ .++|
T Consensus 77 ~~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~--~~~R 154 (313)
T 3mtc_A 77 AKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE--YERR 154 (313)
T ss_dssp SCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGG--HHHH
T ss_pred CCEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCchH--HHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999864 6799
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEeccccceec-cCHHHHHHHHHhccHHHHHhhhHHHHHHHcCCCC
Q 039092 344 NSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYRIA-LSYRFAKALVEMRNWRALLENDQLRIEQRKGHVF 422 (535)
Q Consensus 344 N~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI~-l~~~~v~~li~~~~~~~LL~~DQL~~e~~~g~vF 422 (535)
|+|+.+|++++.|+.... ...+.+|.+||+|||||||||||+ ++.++++++|+.++|+.||++|||++++++|++|
T Consensus 155 n~d~~~I~~~l~f~~~~~---~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f 231 (313)
T 3mtc_A 155 NQDYKDICSRMQFCQPDP---SLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVF 231 (313)
T ss_dssp HHHHHHHHHHCCBCCSCS---SSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSC
T ss_pred HHHHHHHHHhcccCCCCC---ccCCccccCCceEEEeccccccccCCCHHHHHHHHhcCCHHHHHHhHHHHHHHHcCCcc
Confidence 999999999999976422 124678999999999999999996 8999999999999999999999999999999999
Q ss_pred CCCcccccccCCCCCCCCCCcCCCCCCCCCCCCccccccccceeeecCCceeeeeecc-ccccCCCcCccceEEEEEeee
Q 039092 423 NGWSEGKIYFPPTYKYSNNSDRYAGEDRHPKEKRRTPAWCDRILWYGRGLHQLSYVRG-ESRFSDHRPVYSIFLAEVESV 501 (535)
Q Consensus 423 ~gf~Eg~I~F~PTYKy~~~Sd~Y~~~~~~~~~KkR~PAWCDRILw~g~~i~qlsY~~~-e~~~SDHrPV~A~F~v~v~~~ 501 (535)
.||.||+|+|||||||+.||+.|++ ++|+|+|||||||||++++++|++|.+. ++++||||||+|+|.++++++
T Consensus 232 ~gf~E~~I~F~PTYKyd~~s~~ydt-----s~k~R~PsWcDRIL~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~~~ 306 (313)
T 3mtc_A 232 EGFTEGELTFQPTYKYDTGSDDWDT-----SEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRVV 306 (313)
T ss_dssp TTCBCCCCCSCCCBCBCTTSSSBCC-----STTCCCCBCCEEEEEEESSEEEEEEEECTTCCSSSSCCEEEEEEEEEEEE
T ss_pred CCcccCCcCcCCCccCcCCCccccc-----ccCEecccccceEEEecCCeEEEeeeeccCccCCCccCeEEEEEEEEEEe
Confidence 9999999999999999999999984 7899999999999999999999999985 799999999999999999997
Q ss_pred ch
Q 039092 502 NR 503 (535)
Q Consensus 502 ~~ 503 (535)
-+
T Consensus 307 ~~ 308 (313)
T 3mtc_A 307 AH 308 (313)
T ss_dssp CC
T ss_pred ec
Confidence 54
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=9e-86 Score=675.89 Aligned_cols=229 Identities=33% Similarity=0.586 Sum_probs=196.4
Q ss_pred CeEEEEeeeeeceEEEEEEeccccccccceeeeEEeecccccccCceEEEEEEEEcCeEEEEEcccCCCCCCCccHHHHH
Q 039092 265 RYCLVASKQMVGIFLTVWVKSDLRDSVRNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRN 344 (535)
Q Consensus 265 ~Y~~V~S~qmvGI~L~Vfvr~~l~~~I~~v~~s~VgtGi~G~lGNKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~rRN 344 (535)
+|++|+++|||||+|+||||+++.++|++|++++||||+||++||||||+|+|.+++|+|||||||||||+++ .++||
T Consensus 80 ~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~--~~~Rn 157 (316)
T 4a9c_A 80 DYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEK--TARRN 157 (316)
T ss_dssp CCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred CEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCchH--HHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999864 78999
Q ss_pred HHHHHHHHhcCCCCccCCCCCCCCccccccceEEEeccccceeccCHHHHHHHHHhccHHHHHhhhHHHHHHHcCCCCCC
Q 039092 345 SDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYRIALSYRFAKALVEMRNWRALLENDQLRIEQRKGHVFNG 424 (535)
Q Consensus 345 ~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI~l~~~~v~~li~~~~~~~LL~~DQL~~e~~~g~vF~g 424 (535)
+|+.+|++++.|+...- ...+.+.+||||||||||||||++++++++++|+.++|+.||++|||++|+++|++|.|
T Consensus 158 ~d~~~I~~~l~f~~~~~----~~~d~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~g 233 (316)
T 4a9c_A 158 QNYLDILRLLSLGDRQL----NAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLR 233 (316)
T ss_dssp HHHHHHHHHCCC-----------CCTTTTSSEEEEEEECCCCBSSCHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTT
T ss_pred HHHHHHHHhCCCCCCCc----CccccCCcCCeEEEcCCccCCcCCCHHHHHHHHhcccHHHHhccChHHHHHhcCCcccc
Confidence 99999999999964211 12234567999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCCCCCCCc-CCCCCCC-CCCCCccccccccceeeecC---Cceeeeeec-cccccCCCcCccceEEEEE
Q 039092 425 WSEGKIYFPPTYKYSNNSD-RYAGEDR-HPKEKRRTPAWCDRILWYGR---GLHQLSYVR-GESRFSDHRPVYSIFLAEV 498 (535)
Q Consensus 425 f~Eg~I~F~PTYKy~~~Sd-~Y~~~~~-~~~~KkR~PAWCDRILw~g~---~i~qlsY~~-~e~~~SDHrPV~A~F~v~v 498 (535)
|+||+|+|||||||+.|++ .|+.+.. .+++|+|+|||||||||++. .+.+++|.+ .++++||||||+|+|.|+|
T Consensus 234 f~E~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V 313 (316)
T 4a9c_A 234 FSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGV 313 (316)
T ss_dssp CBCCCCCSCCCBCBCTTCSSCBCCC--------CCCCBCCEEEEEEECTTCCEEEEEEEECSSCCSSSSCCEEEEEEEEC
T ss_pred cccCCcccCCCccccCCCcccccccccccccccccCCcccceEEeccCCCCceEEeeecccCCcCCCCcccEEEEEEEEE
Confidence 9999999999999999995 5764322 24668899999999999986 478899997 5899999999999999998
Q ss_pred e
Q 039092 499 E 499 (535)
Q Consensus 499 ~ 499 (535)
.
T Consensus 314 ~ 314 (316)
T 4a9c_A 314 T 314 (316)
T ss_dssp C
T ss_pred E
Confidence 5
No 3
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=2.6e-77 Score=622.68 Aligned_cols=232 Identities=31% Similarity=0.541 Sum_probs=210.1
Q ss_pred CeEEEEeeeeeceEEEEEEeccccccccceeeeEEeecccccccCceEEEEEEEEcCeEEEEEcccCCCCCCCccHHHHH
Q 039092 265 RYCLVASKQMVGIFLTVWVKSDLRDSVRNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRN 344 (535)
Q Consensus 265 ~Y~~V~S~qmvGI~L~Vfvr~~l~~~I~~v~~s~VgtGi~G~lGNKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~rRN 344 (535)
.|+++.+.+|+|++|+||+|.++.++|+++++++|+||+||++||||+|+|+|.+++|+||||||||+||+++ ..+||
T Consensus 86 ~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~--~~~Rn 163 (357)
T 2xsw_A 86 HYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGK--VAERL 163 (357)
T ss_dssp TEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred cccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCCCch--HHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999864 67899
Q ss_pred HHHHHHHHhcCCCCccCCCC---CCCCccccccceEEEeccccceeccCHHHHHHHHH---hccHHHHHhhhHHHHHHHc
Q 039092 345 SDVMEIIRKTRFPKVHGIGD---ENSPQTILEHDRIIWLGDLNYRIALSYRFAKALVE---MRNWRALLENDQLRIEQRK 418 (535)
Q Consensus 345 ~D~~eIlr~~~F~~~~~~~~---~~~p~~I~dhD~ifw~GDLNYRI~l~~~~v~~li~---~~~~~~LL~~DQL~~e~~~ 418 (535)
+|+.+|++++.|++...... ....+.+.+||+|||+|||||||++++++++++++ .++|+.||++|||+.++++
T Consensus 164 ~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~ 243 (357)
T 2xsw_A 164 LDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRK 243 (357)
T ss_dssp HHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCHHHHHHHHC---CCCHHHHHTTBHHHHHHHH
T ss_pred HHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccccchHHHHHHHhhcchhhHHHHHhcChhHHHHhc
Confidence 99999999999976422110 01123566899999999999999999999999986 5789999999999999999
Q ss_pred CCCCCCCcccccccCCCCCCCCCCcCCCCCCCCCCCCccccccccceeeecC---Cceeeeeec-cccccCCCcCccceE
Q 039092 419 GHVFNGWSEGKIYFPPTYKYSNNSDRYAGEDRHPKEKRRTPAWCDRILWYGR---GLHQLSYVR-GESRFSDHRPVYSIF 494 (535)
Q Consensus 419 g~vF~gf~Eg~I~F~PTYKy~~~Sd~Y~~~~~~~~~KkR~PAWCDRILw~g~---~i~qlsY~~-~e~~~SDHrPV~A~F 494 (535)
|++|.||+|++|+|||||||+.|++.|++ ++|+|+|||||||||++. .+.++.|.+ .++++||||||+|.|
T Consensus 244 g~~F~gf~E~~I~F~PTYKy~~~t~~Ydt-----s~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f 318 (357)
T 2xsw_A 244 GSIFKGFQEPDIHFLPSYKFDIGKDTYDS-----TSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLF 318 (357)
T ss_dssp TSSSTTCBCCCCCSCCCBCBCTTSSSBCC-----STTCCCCBCCEEEEEEESSTTSEEEEEEEECTTCCSSSSCCEEEEE
T ss_pred cccccCccccCCCCCCCccccCCCccccc-----cCCCCCCcccceEEEecCCCCceEEEEeEecccccCCCcCCceeEE
Confidence 99999999999999999999999999984 789999999999999964 688999998 589999999999999
Q ss_pred EEEEeeech
Q 039092 495 LAEVESVNR 503 (535)
Q Consensus 495 ~v~v~~~~~ 503 (535)
.+.|+...+
T Consensus 319 ~v~v~~~~~ 327 (357)
T 2xsw_A 319 RVKVRPGRD 327 (357)
T ss_dssp EEECCCCCS
T ss_pred EEEEecCCc
Confidence 999987654
No 4
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=5.7e-77 Score=617.97 Aligned_cols=229 Identities=37% Similarity=0.625 Sum_probs=212.6
Q ss_pred CCeEEEEeeeeeceEEEEEEeccccccccceeeeEEeecccccccCceEEEEEEEEcCeEEEEEcccCCCCCCCccHHHH
Q 039092 264 SRYCLVASKQMVGIFLTVWVKSDLRDSVRNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRR 343 (535)
Q Consensus 264 ~~Y~~V~S~qmvGI~L~Vfvr~~l~~~I~~v~~s~VgtGi~G~lGNKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~rR 343 (535)
..|++|+++||+|++|+||+|.++.++|++|++++|+||++|++||||+|+++|.+++++||||||||+||+.+ ..+|
T Consensus 100 ~~Y~~v~s~~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~--~~~R 177 (347)
T 1i9z_A 100 PGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN--YDER 177 (347)
T ss_dssp CCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSC--HHHH
T ss_pred CceeEEEEeeccceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecCCCCCcc--HHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999864 4579
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEeccccceeccCHHHHHHHHHhccHHHHHhhhHHHHHHHcCCCCC
Q 039092 344 NSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYRIALSYRFAKALVEMRNWRALLENDQLRIEQRKGHVFN 423 (535)
Q Consensus 344 N~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI~l~~~~v~~li~~~~~~~LL~~DQL~~e~~~g~vF~ 423 (535)
|+|+.+|++++.|+. ...|.+||++||||||||||+++.+.++.+|+.++|+.||++|||+.++++|++|.
T Consensus 178 ~~d~~~I~~~l~f~~---------~~~i~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~ 248 (347)
T 1i9z_A 178 DHDYRTIASGLRFRR---------GRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFP 248 (347)
T ss_dssp HHHHHHHHHHCCCGG---------GCCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSST
T ss_pred HHHHHHHHHhhccCc---------ccccccCccEEEecccccccCCCHHHHHHHHhhccHHHhhcccHHHHHHhcCCccc
Confidence 999999999999864 23578899999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCCCCCCCCCcCCCCCCCCCCCCccccccccceeeecCCceeeeeeccccccCCCcCccceEEEEEeeech
Q 039092 424 GWSEGKIYFPPTYKYSNNSDRYAGEDRHPKEKRRTPAWCDRILWYGRGLHQLSYVRGESRFSDHRPVYSIFLAEVESVNR 503 (535)
Q Consensus 424 gf~Eg~I~F~PTYKy~~~Sd~Y~~~~~~~~~KkR~PAWCDRILw~g~~i~qlsY~~~e~~~SDHrPV~A~F~v~v~~~~~ 503 (535)
||.|++|+|+|||||+.+++.|++ ++|+|+|||||||||++ +++++.|.+.++++||||||+|.|.+.|+++++
T Consensus 249 ~f~E~~i~F~PTYK~~~~~~~yd~-----s~k~R~PsWcDRIL~~~-~l~~~~Y~~~~~~~SDH~PV~a~f~~~v~~~~~ 322 (347)
T 1i9z_A 249 FFSELPITFPPTYKFDIGTDIYDT-----SDKHRVPAWTDRILYRG-ELVPHSYQSVPLYYSDHRPIYATYEANIVKVDR 322 (347)
T ss_dssp TCBCCCCCSCCCBCBCTTSSCBCC-----STTCCCCBCCEEEEEES-SCEEEEEEECCCCSSSBCCEEEEEEEEEEEECH
T ss_pred ccccCCCCCCCCcccCCCCccccc-----cccccCCcccceEEEeC-CEEEEEEEecCccCCCcCCceeEEEEEEecCCH
Confidence 999999999999999999999984 78999999999999998 899999999889999999999999999999998
Q ss_pred hhhhhh
Q 039092 504 SRIKKS 509 (535)
Q Consensus 504 ~k~k~~ 509 (535)
++.++.
T Consensus 323 ~~~~~~ 328 (347)
T 1i9z_A 323 EKKKIL 328 (347)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876544
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=4.6e-62 Score=490.24 Aligned_cols=206 Identities=25% Similarity=0.446 Sum_probs=186.3
Q ss_pred CCeEEEEe--eeeeceEEEEEEeccccccccceeeeEEeecccccccCceEEEEEEEEcCeEEEEEcccCCCCCCCccHH
Q 039092 264 SRYCLVAS--KQMVGIFLTVWVKSDLRDSVRNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICSHLTSGQKEGDEL 341 (535)
Q Consensus 264 ~~Y~~V~S--~qmvGI~L~Vfvr~~l~~~I~~v~~s~VgtGi~G~lGNKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~ 341 (535)
..|++|.+ .+|+|++++||+|.++.+.|+++.+ +|++|.+||||+|+++|.+++++||||||||+|++.+ ..
T Consensus 71 ~~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~--~~ 144 (282)
T 2imq_X 71 KGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVT--ST 144 (282)
T ss_dssp TTEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCC--TT
T ss_pred CceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCch--HH
Confidence 36899998 8999999999999999988888765 5678999999999999999999999999999999643 45
Q ss_pred HHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEeccccceeccCHHHHHHHHHhccHHHHHhhhHHHHHHHcCCC
Q 039092 342 RRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYRIALSYRFAKALVEMRNWRALLENDQLRIEQRKGHV 421 (535)
Q Consensus 342 rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI~l~~~~v~~li~~~~~~~LL~~DQL~~e~~~g~v 421 (535)
+||+|+..|++++.+ +.++|+|||+||||||++++.+.++++++.++|..|+++|||..+++ |.+
T Consensus 145 ~R~~~~~~I~~~~~~--------------~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~~~~~l~~~DqL~~~~~-~~~ 209 (282)
T 2imq_X 145 NTKYAYDTRLDYSKK--------------DDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKE-QKL 209 (282)
T ss_dssp SSSSSCCGGGCTTSS--------------SSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHHH-TTS
T ss_pred HHHHHHHHHHHhhhc--------------cCccceEEEecccccccCCCHHHHHHHHhhccHHHHhhhhHHHHhhc-ccc
Confidence 799999999876532 34678999999999999999999999999999999999999999999 999
Q ss_pred CCCCcccccccCCCCCCCCCCcCCCCCCCCCCCCccccccccceeeecC---Cceeeeeecc-ccccCCCcCccceEEEE
Q 039092 422 FNGWSEGKIYFPPTYKYSNNSDRYAGEDRHPKEKRRTPAWCDRILWYGR---GLHQLSYVRG-ESRFSDHRPVYSIFLAE 497 (535)
Q Consensus 422 F~gf~Eg~I~F~PTYKy~~~Sd~Y~~~~~~~~~KkR~PAWCDRILw~g~---~i~qlsY~~~-e~~~SDHrPV~A~F~v~ 497 (535)
|.||.|++|+|+|||||+.+++.|++ +|+|||||||||++. .++++.|.+. ++++|||+||+|.|.++
T Consensus 210 f~~f~e~~i~f~PTYk~~~~~~~y~~--------~R~Psw~DrIl~~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~~~ 281 (282)
T 2imq_X 210 FDGWTEPQVTFKPTYKFKPNTDEYDL--------SATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVT 281 (282)
T ss_dssp STTCBCCCCCSCCCBCBCTTSSCBCT--------TSCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEE
T ss_pred ccccccCCcCCCCCccccCCCccccc--------cCCccccceEEEecCCCCceEeeEecCCCCCCCCCcCCeEEEEEEE
Confidence 99999999999999999999999973 699999999999964 6899999986 78999999999999876
Q ss_pred E
Q 039092 498 V 498 (535)
Q Consensus 498 v 498 (535)
+
T Consensus 282 ~ 282 (282)
T 2imq_X 282 L 282 (282)
T ss_dssp C
T ss_pred C
Confidence 4
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=98.66 E-value=1.7e-07 Score=87.61 Aligned_cols=66 Identities=23% Similarity=0.396 Sum_probs=47.9
Q ss_pred ccccCceEEEEEEEEcCeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEecccc
Q 039092 305 GYLGNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLN 384 (535)
Q Consensus 305 G~lGNKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLN 384 (535)
+....++.+.+.+.+.+..|.++|+||.++... ...|..++.+|++.+.- ......+|++||||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~l~~--------------~~~~~pvIl~GDfN 160 (256)
T 4gz1_A 97 NTKMMRNLLCVNVSLGGNEFCLMTSHLESTREH--SAERIRQLKTVLGKMQE--------------APDSTTVIFAGDTN 160 (256)
T ss_dssp TCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHH--------------SCTTSEEEEEEECC
T ss_pred cccccceEEEEEEEeCCEEEEEEeecccccccc--hhhhhHHHHHHhhhhhh--------------ccCcceEEEeCccC
Confidence 445567889999999999999999999987543 34566777777765420 01124689999999
Q ss_pred ce
Q 039092 385 YR 386 (535)
Q Consensus 385 YR 386 (535)
..
T Consensus 161 ~~ 162 (256)
T 4gz1_A 161 LR 162 (256)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 7
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=98.45 E-value=1.1e-06 Score=82.36 Aligned_cols=68 Identities=18% Similarity=0.088 Sum_probs=44.6
Q ss_pred ccCceEEEEEEEEcCeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEeccccce
Q 039092 307 LGNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYR 386 (535)
Q Consensus 307 lGNKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYR 386 (535)
-+.++.+.+.+.+.+..|.++|+||.+.... ...|...+..++..+.... .......+|++||||-+
T Consensus 103 ~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~~~~~~-----------~~~~~~~vIl~GDfN~~ 169 (256)
T 4fva_A 103 GMYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQRCAQFGFCMDKVREII-----------AQNPGALVFFGGDLNLR 169 (256)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHHHHHH-----------HHSTTCEEEEEEECCCC
T ss_pred cccceeEEEEEEeCCeEEEEEEecCCCCCcc--hHHHHHHHHHHHHHhhhhh-----------hccCCCcEEEeccCCCC
Confidence 3567888899999999999999999987542 3345555555544321000 00123569999999965
Q ss_pred e
Q 039092 387 I 387 (535)
Q Consensus 387 I 387 (535)
-
T Consensus 170 ~ 170 (256)
T 4fva_A 170 D 170 (256)
T ss_dssp G
T ss_pred c
Confidence 3
No 8
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=98.44 E-value=2.3e-06 Score=81.37 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=48.5
Q ss_pred ccCceEEEEEEEEcCeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEeccccce
Q 039092 307 LGNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYR 386 (535)
Q Consensus 307 lGNKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYR 386 (535)
+..+|.+.+.+.+.+..|+++|+||.+.... ...|..++..|++.+. . ...+|++||||-.
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~r~~q~~~l~~~~~-------------~----~~~~il~GDfN~~ 180 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCE--TEDMGKNIQTILNRTQ-------------N----SNLKILMGDFNTD 180 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCT--TCCHHHHHHHHHTSSC-------------S----CCEEEEEEECCCC
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCC--hHHHHHHHHHHHHHHh-------------c----CCcEEEEeECCCC
Confidence 4568999999999999999999999987532 2357778888876431 0 3679999999986
Q ss_pred e
Q 039092 387 I 387 (535)
Q Consensus 387 I 387 (535)
-
T Consensus 181 ~ 181 (266)
T 3teb_A 181 A 181 (266)
T ss_dssp T
T ss_pred C
Confidence 5
No 9
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.40 E-value=1e-06 Score=85.96 Aligned_cols=70 Identities=21% Similarity=0.226 Sum_probs=49.3
Q ss_pred ccCceEEEEEEEEcCeEEEEEcccCCCCCCC----ccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEecc
Q 039092 307 LGNKGSISISMSLHQTSFCFICSHLTSGQKE----GDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGD 382 (535)
Q Consensus 307 lGNKGaVsvs~~i~~ts~cFVn~HLaAge~e----~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GD 382 (535)
+.++|++.+.+.+.+..|.++|+||.++... .....|..++..|.+.+.= . .+.....+|++||
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~--~----------~~~~~~pvIl~GD 195 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAK--K----------NIPKDEIIFIGGD 195 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHH--H----------TCCTTSEEEEEEE
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHH--h----------CCCCCCeEEEEee
Confidence 4579999999999999999999999987532 1344577777777654310 0 0112256999999
Q ss_pred ccceec
Q 039092 383 LNYRIA 388 (535)
Q Consensus 383 LNYRI~ 388 (535)
||-.-.
T Consensus 196 fN~~~~ 201 (301)
T 1zwx_A 196 LNVNYG 201 (301)
T ss_dssp CCCCTT
T ss_pred CCCCCC
Confidence 997654
No 10
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=98.38 E-value=8e-07 Score=81.42 Aligned_cols=62 Identities=19% Similarity=0.342 Sum_probs=44.3
Q ss_pred CceEEEEEEEEcCeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEeccccce
Q 039092 309 NKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYR 386 (535)
Q Consensus 309 NKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYR 386 (535)
..+.+.+.+.+.+..|.++++||.+.... ...|...+.+|++.+.= ......+|++||||-.
T Consensus 95 ~~~~~~~~~~~~~~~~~v~~~hl~~~~~~--~~~r~~q~~~~~~~l~~--------------~~~~~pvIl~GDfN~~ 156 (250)
T 4f1h_A 95 MRNLLIAQVTFSGQKLYLMTSHLESCKNQ--SQERTKQLRVVLQKIKE--------------APEDAIVIFAGDTNLR 156 (250)
T ss_dssp CCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHH--------------SCTTEEEEEEEECCCC
T ss_pred cceEEEEEEecCCcEEEEecccccccccc--HHHHHHHHHHHHHHHHh--------------cCCCCCEEEEEecCCC
Confidence 45677888889999999999999987542 34567777777765420 0112468999999953
No 11
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.30 E-value=9.5e-07 Score=88.71 Aligned_cols=71 Identities=21% Similarity=0.205 Sum_probs=51.1
Q ss_pred cccCceEEEEEEEEcCeEEEEEcccCCCCCCC----ccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEec
Q 039092 306 YLGNKGSISISMSLHQTSFCFICSHLTSGQKE----GDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLG 381 (535)
Q Consensus 306 ~lGNKGaVsvs~~i~~ts~cFVn~HLaAge~e----~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~G 381 (535)
...+||.+.+.+.+.+..|.++|+||.+.... .....|..++..|.+.+.=. .+.....||++|
T Consensus 146 ~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~------------~~~~~~pvIl~G 213 (317)
T 3i41_A 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKK------------NIPKDETVYIGG 213 (317)
T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHH------------TCCTTSCEEEEE
T ss_pred cccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHh------------ccCCCCeEEEEe
Confidence 36789999999999999999999999986531 13557888888776643200 011125699999
Q ss_pred cccceec
Q 039092 382 DLNYRIA 388 (535)
Q Consensus 382 DLNYRI~ 388 (535)
|||-.-.
T Consensus 214 DfN~~~~ 220 (317)
T 3i41_A 214 DLNVNKG 220 (317)
T ss_dssp ECCCCTT
T ss_pred ECCCCCC
Confidence 9997653
No 12
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=98.15 E-value=7.7e-06 Score=84.42 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=44.6
Q ss_pred CceEEEEEEEEcCeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEeccccce
Q 039092 309 NKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYR 386 (535)
Q Consensus 309 NKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYR 386 (535)
..+++.+.+.+.+..|+++|+||.++.. ....|...+..++..+.-.. .......||++||||-+
T Consensus 211 ~r~~l~~~i~~~g~~l~v~ntHL~s~~~--~~~~R~~Q~~~l~~~~~~~~-----------~~~~~~pvIl~GDFN~~ 275 (362)
T 4gew_A 211 YRTLQILEGSIGGLKVFLLNTHLESTRE--HRPQRCAQFGFCMDKVREII-----------AQNPGALVFFGGDLNLR 275 (362)
T ss_dssp CCEEEEEEEEETTEEEEEEEEECCCSGG--GHHHHHHHHHHHHHHHHHHH-----------HHCTTCEEEEEEECCCC
T ss_pred cceEEEEEEEECCEEEEEEEecCCcccc--chhHHHHHHHHHHHHhHhhh-----------hcCCCCCeEEeecCCCC
Confidence 4678888999999999999999998753 23457777766655321000 00112469999999965
No 13
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=98.14 E-value=9.7e-06 Score=77.06 Aligned_cols=68 Identities=9% Similarity=0.104 Sum_probs=44.8
Q ss_pred cCceEEEEEEEEcCeEEEEEcccCCCCCCCcc---HHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEecccc
Q 039092 308 GNKGSISISMSLHQTSFCFICSHLTSGQKEGD---ELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLN 384 (535)
Q Consensus 308 GNKGaVsvs~~i~~ts~cFVn~HLaAge~e~d---~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLN 384 (535)
.+++.+.+.+.+.+..|+++|+||.++....+ ...|.+.+.+|...+.- . ......+|++||||
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~--~-----------~~~~~~~Il~GDFN 153 (268)
T 1ako_A 87 AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLET--E-----------LKRDNPVLIMGDMN 153 (268)
T ss_dssp HHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHH--H-----------CCTTSCEEEEEECC
T ss_pred cCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHH--h-----------hhCCCCEEEEeECC
Confidence 45788999999988999999999998764221 12355555555443210 0 01125699999999
Q ss_pred ceec
Q 039092 385 YRIA 388 (535)
Q Consensus 385 YRI~ 388 (535)
-..+
T Consensus 154 ~~~~ 157 (268)
T 1ako_A 154 ISPT 157 (268)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 6543
No 14
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.14 E-value=1.1e-05 Score=78.65 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=47.5
Q ss_pred ccCceEEEEEEEEcCeEEEEEcccCCCCCCC----ccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEecc
Q 039092 307 LGNKGSISISMSLHQTSFCFICSHLTSGQKE----GDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGD 382 (535)
Q Consensus 307 lGNKGaVsvs~~i~~ts~cFVn~HLaAge~e----~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GD 382 (535)
..++|++.+.+.+.+..|.++|+||.+.... .....|..++.+|.+.+.= . .+.....+|++||
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~--~----------~~~~~~pvil~GD 195 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKN--K----------NIPNNEYVLIGGD 195 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHH--H----------TCCTTSCEEEEEE
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHH--h----------cCCCCCEEEEEee
Confidence 4578999999999999999999999987421 1344677777777654310 0 0011246999999
Q ss_pred cccee
Q 039092 383 LNYRI 387 (535)
Q Consensus 383 LNYRI 387 (535)
||-.-
T Consensus 196 fN~~~ 200 (306)
T 2ddr_A 196 MNVNK 200 (306)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 99866
No 15
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=98.13 E-value=2.3e-05 Score=74.61 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=44.6
Q ss_pred ccCceEEEEEEEEc--CeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEecccc
Q 039092 307 LGNKGSISISMSLH--QTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLN 384 (535)
Q Consensus 307 lGNKGaVsvs~~i~--~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLN 384 (535)
...++++.+.+... +..|.++|+||.+.. ...|..++..|++.+. ..+.. +.+|++||||
T Consensus 107 ~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~r~~q~~~l~~~i~-------------~~~~~-~pvil~GDfN 168 (257)
T 3l1w_A 107 GCPRIALWGLFKETTQNTPFLVINVHLDHIS----AHARLAGMTVILEELH-------------DKIAQ-YPTLLMGDFN 168 (257)
T ss_dssp SSCCEEEEEEEEETTCSSCEEEEEEECCSSC----HHHHHHHHHHHHHHTH-------------HHHHH-SCEEEEEECC
T ss_pred cccceeEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHH-------------HHcCC-CCEEEEeeCC
Confidence 45788888998884 689999999998863 3467778888776542 00111 2699999999
Q ss_pred ce
Q 039092 385 YR 386 (535)
Q Consensus 385 YR 386 (535)
-.
T Consensus 169 ~~ 170 (257)
T 3l1w_A 169 AE 170 (257)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 16
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.05 E-value=2e-05 Score=75.60 Aligned_cols=61 Identities=20% Similarity=0.218 Sum_probs=42.4
Q ss_pred ccCceEEEEEEEE--cCeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEecccc
Q 039092 307 LGNKGSISISMSL--HQTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLN 384 (535)
Q Consensus 307 lGNKGaVsvs~~i--~~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLN 384 (535)
..+++++.+.+.. .+..|+++|+||.+.. ...|.+....|++.+. .+.....+|++||||
T Consensus 113 ~~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~l~--------------~~~~~~pvIl~GDfN 174 (267)
T 3g6s_A 113 VCVRIATWAKFKDKATGKIFMAVNTHFDHVG----EEARRQSALLIIRKIK--------------EIVGERPAVVTGDFN 174 (267)
T ss_dssp SSCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHH--------------HHTTTSCEEEEEECS
T ss_pred cCcceEEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHH--------------HhcCCCCEEEEeECC
Confidence 3467888888885 6789999999998753 3467666666655431 001124589999999
Q ss_pred c
Q 039092 385 Y 385 (535)
Q Consensus 385 Y 385 (535)
-
T Consensus 175 ~ 175 (267)
T 3g6s_A 175 V 175 (267)
T ss_dssp S
T ss_pred C
Confidence 5
No 17
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=0.00019 Score=70.66 Aligned_cols=62 Identities=15% Similarity=0.076 Sum_probs=42.1
Q ss_pred cCceEEEEEEE--EcCeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcC-CCCccCCCCCCCCccccccceEEEecccc
Q 039092 308 GNKGSISISMS--LHQTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTR-FPKVHGIGDENSPQTILEHDRIIWLGDLN 384 (535)
Q Consensus 308 GNKGaVsvs~~--i~~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~-F~~~~~~~~~~~p~~I~dhD~ifw~GDLN 384 (535)
-+++++.+.|. ..+..|+++|+||.+.. ...|..+...|++.+. +.. . ....+|++||||
T Consensus 118 ~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~i~~~~~---------~----~~~pvIl~GDfN 180 (298)
T 3mpr_A 118 LPRICSWGHFKCKDTGFEFLFFNLHMDHIG----KKARVESAFLVQEKMKELGR---------G----KNLPAILTGDFN 180 (298)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHHTTT---------T----SCCCEEEEEECS
T ss_pred cCceeEEEEEEEcCCCCEEEEEEecCCCCC----HHHHHHHHHHHHHHHHHHhc---------C----CCCcEEEEEeCC
Confidence 46778888888 46789999999998542 3467777777665432 100 0 124589999999
Q ss_pred ce
Q 039092 385 YR 386 (535)
Q Consensus 385 YR 386 (535)
-.
T Consensus 181 ~~ 182 (298)
T 3mpr_A 181 VD 182 (298)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 18
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=97.22 E-value=0.00099 Score=62.61 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=32.0
Q ss_pred EEEcCeEEEEEcccCCCCCCCccH--HHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEeccccceec
Q 039092 317 MSLHQTSFCFICSHLTSGQKEGDE--LRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYRIA 388 (535)
Q Consensus 317 ~~i~~ts~cFVn~HLaAge~e~d~--~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI~ 388 (535)
..+. .|.++|+|+.++...+.+ ..|.+.+.++...+. . .+.....+|++||||-...
T Consensus 94 ~~~~--~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~--~-----------~~~~~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 94 ATVS--GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVR--D-----------EMTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp EEET--TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHH--H-----------HHTTCSSEEEEEECCCCCS
T ss_pred EEeC--CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHH--H-----------HhcCCCCEEEEeECCCCCc
Confidence 4453 699999999987643221 224443444433221 0 0011246999999997654
No 19
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=96.83 E-value=0.0055 Score=58.10 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=41.4
Q ss_pred cCceEEEEEEEEcCeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEecccccee
Q 039092 308 GNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYRI 387 (535)
Q Consensus 308 GNKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI 387 (535)
-..|.+.+.+.+.+..|.++|+|++.+.. ...+.+.+.++++.+ ....+|++||||--.
T Consensus 101 ~~~~~~~~~i~~~~~~~~v~~vy~p~~~~---~~~~~~~l~~~~~~~------------------~~~~~Ii~GDfN~~~ 159 (245)
T 1wdu_A 101 TTNNIVVVGIRTRAWEITLVSYYFEPDKP---IESYLEQIKRVERKM------------------GPKRLIFGGDANAKS 159 (245)
T ss_dssp CCSSEEEEEEECSSCEEEEEEEECCTTSC---SHHHHHHHHHHHHTT------------------CSSSEEEEEECCCCC
T ss_pred ccCCEEEEEEEcCCCcEEEEEEEeCCCCC---HHHHHHHHHHHHHHh------------------CCCcEEEEeccccCc
Confidence 35677888888888899999999998752 123444566665532 113589999999543
No 20
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=96.46 E-value=0.0038 Score=60.20 Aligned_cols=35 Identities=20% Similarity=0.034 Sum_probs=22.2
Q ss_pred cccceeeecCCce-eeeeec-cccccCCCcCccceEE
Q 039092 461 WCDRILWYGRGLH-QLSYVR-GESRFSDHRPVYSIFL 495 (535)
Q Consensus 461 WCDRILw~g~~i~-qlsY~~-~e~~~SDHrPV~A~F~ 495 (535)
=-|+||....-.. ...+.- .+...|||.||.+.|.
T Consensus 248 rID~i~~s~~~~~~v~~~~v~~~~~~SDH~pv~~~l~ 284 (285)
T 2o3h_A 248 RLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 284 (285)
T ss_dssp CCEEEEECGGGGGGEEEEEECTTCCSSSBCCEEEEEC
T ss_pred EEEEEEECHHHHhhhhheEeeccCCCCCeecEEEEec
Confidence 3799998754221 222222 2356899999999874
No 21
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=96.46 E-value=0.005 Score=56.95 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=35.5
Q ss_pred EEEEEEEEcCeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEecccccee
Q 039092 312 SISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYRI 387 (535)
Q Consensus 312 aVsvs~~i~~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI 387 (535)
.+.+.+.+.+..|.++|+|++++.. .+. +.++++.+.= . ....+|++||||-..
T Consensus 97 ~i~~~~~~~~~~~~v~~~y~p~~~~----~~~---~~~l~~~l~~----------~-----~~~~~Il~GDFN~~~ 150 (238)
T 1vyb_A 97 YIMVKGSIQQEELTILNIYAPNTGA----PRF---IKQVLSDLQR----------D-----LDSHTLIMGDFNTPL 150 (238)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSH----HHH---HHHHHHHTTT----------T-----CCTTEEEEEECSSCS
T ss_pred EEEEEEEeCCCcEEEEEEecCCCCc----HHH---HHHHHHHHHh----------c-----cCCCEEEEccCCCCC
Confidence 5667777888999999999988642 121 3344444320 0 014599999999743
No 22
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.22 E-value=0.0011 Score=74.10 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred cCeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEecccccee
Q 039092 320 HQTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYRI 387 (535)
Q Consensus 320 ~~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI 387 (535)
.+..|+++|+||.++.+..+ .|-.....|++.+. .............-.....||++||||---
T Consensus 545 ~g~~l~V~ntHL~~~p~~~~--~R~~Qa~~l~~~l~--~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P 608 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFND--VKTFQVGVLLDHLE--TLLKEETSHNFRQDIKKFPVLICGDFNSYI 608 (727)
T ss_dssp --------------------------------------------------------------------
T ss_pred CCceEEEEEeccccCCCCCc--hHHHHHHHHHHHHH--HHHHHhcccccccccCCCceEEecccCCCC
Confidence 36789999999998643222 35445555544332 000000000000001124699999999543
No 23
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=96.13 E-value=0.01 Score=63.72 Aligned_cols=34 Identities=18% Similarity=0.012 Sum_probs=21.7
Q ss_pred ccceeeecCCce-eeeee-ccccccCCCcCccceEE
Q 039092 462 CDRILWYGRGLH-QLSYV-RGESRFSDHRPVYSIFL 495 (535)
Q Consensus 462 CDRILw~g~~i~-qlsY~-~~e~~~SDHrPV~A~F~ 495 (535)
-|+||....-.. ...+. ..+...|||.||.+.|.
T Consensus 430 IDyIlvS~~l~~~v~~~~I~~~~~~SDH~PV~~~l~ 465 (467)
T 2j63_A 430 LDYFVVSSRLASYVVDCFPMPTVMGSDHCPFQMWMR 465 (467)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEE
T ss_pred eEEEEEcHHHHcceeEEEECCCCCCCCcccEEEEEE
Confidence 699987654221 22222 23457899999998875
No 24
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=95.84 E-value=0.0051 Score=57.81 Aligned_cols=37 Identities=19% Similarity=0.095 Sum_probs=23.6
Q ss_pred ccccceeeecCCce-eeeeec-cccccCCCcCccceEEE
Q 039092 460 AWCDRILWYGRGLH-QLSYVR-GESRFSDHRPVYSIFLA 496 (535)
Q Consensus 460 AWCDRILw~g~~i~-qlsY~~-~e~~~SDHrPV~A~F~v 496 (535)
.--|+||....-.. ...+.- .+...|||.||.+.|.+
T Consensus 218 ~rID~i~~s~~~~~~~~~~~v~~~~~~SDH~pv~~~l~~ 256 (259)
T 2jc5_A 218 WRIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDY 256 (259)
T ss_dssp ECCEEEEECHHHHTTEEEEEECCSSCCSSBCCEEEEESC
T ss_pred eEEEEEEECHHHHhHHhheeecCCCCCCCcccEEEEEec
Confidence 44799998753111 222222 24678999999998864
No 25
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=95.78 E-value=0.0097 Score=59.16 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=30.2
Q ss_pred eEEEEEcccCCCCCCCc-cHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEecccccee
Q 039092 322 TSFCFICSHLTSGQKEG-DELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYRI 387 (535)
Q Consensus 322 ts~cFVn~HLaAge~e~-d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI 387 (535)
..|.++|+|+.++.... ....|.+.+..|...+. .+.....+|++||||-..
T Consensus 163 ~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~--------------~~~~~~pvIl~GDFN~~~ 215 (318)
T 1hd7_A 163 DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLK--------------GLASRKPLVLCGDLNVAH 215 (318)
T ss_dssp SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHH--------------HHHHHSCEEEEEECSCCC
T ss_pred CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHH--------------hcccCCCEEEEeeCCCCC
Confidence 47999999998765321 12235544454443321 011125699999999654
No 26
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=94.61 E-value=0.053 Score=50.95 Aligned_cols=35 Identities=23% Similarity=0.134 Sum_probs=20.7
Q ss_pred cccceeeecCCce-eeeeec-c----ccccCCCcCccceEE
Q 039092 461 WCDRILWYGRGLH-QLSYVR-G----ESRFSDHRPVYSIFL 495 (535)
Q Consensus 461 WCDRILw~g~~i~-qlsY~~-~----e~~~SDHrPV~A~F~ 495 (535)
=-|+||....-.. ...+.- . ....|||.||.+.|.
T Consensus 216 rID~i~~s~~~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~ 256 (257)
T 2voa_A 216 RGDAILATPPLAERCVDCYADIKPRLAEKPSDHLPLVAVFD 256 (257)
T ss_dssp CCEEEEECHHHHTTEEEEEECCHHHHSSSCCSBCCEEEEEC
T ss_pred EEEEEEECHHHHhhhheeEeehhhccCCCCCCccCEEEEEe
Confidence 3799998643111 112211 1 136899999999874
No 27
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=94.50 E-value=0.066 Score=51.06 Aligned_cols=33 Identities=24% Similarity=0.515 Sum_probs=21.3
Q ss_pred EEEEecccCCCCCCCCCCchhhcCCCCCCcEEEE
Q 039092 92 IFVATWNVAGKSPPSYLNLEDWLQTSPPADIYVL 125 (535)
Q Consensus 92 ifvgTWNVgG~~P~~~Ldl~dwL~~~~~aDIYVl 125 (535)
+-|.||||.|...+....|-+||... .+||-.|
T Consensus 4 l~i~s~Nv~g~~~~~~~~l~~~i~~~-~~DIv~L 36 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRKGFLKWFMEE-KPDILCL 36 (265)
T ss_dssp EEEEEEECSCHHHHHHHTHHHHHHHH-CCSEEEE
T ss_pred cEEEEEEcCCchhhhhhhHHHHHHhc-CCCEEEE
Confidence 55789999885433222466777653 5788777
No 28
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=92.43 E-value=0.15 Score=48.71 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=20.0
Q ss_pred ceEEEEEEEEc---CeEEEEEcccCCCCC
Q 039092 310 KGSISISMSLH---QTSFCFICSHLTSGQ 335 (535)
Q Consensus 310 KGaVsvs~~i~---~ts~cFVn~HLaAge 335 (535)
.+.+.+.|... +..|.+||+||.+..
T Consensus 111 R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~ 139 (260)
T 2a40_B 111 REPAVVKFSSHSTKVKEFAIVALHSAPSD 139 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGGG
T ss_pred eCCEEEEEEeCCCCCceEEEEEecCCCCC
Confidence 55566777765 579999999999753
No 29
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=91.92 E-value=0.66 Score=44.58 Aligned_cols=56 Identities=9% Similarity=0.060 Sum_probs=34.1
Q ss_pred CceEEEEEEEEcCeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEecccccee
Q 039092 309 NKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYRI 387 (535)
Q Consensus 309 NKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI 387 (535)
..|++.|.+.+ ..+.++|+|++.++.. ....+.+.+++..+. ...+|++||||=--
T Consensus 77 ~~~~~~i~i~~--~~i~i~svY~P~~~~~---~~~~~~l~~l~~~~~------------------~~~~Ii~GDfN~~~ 132 (240)
T 2ei9_A 77 STHITVVHIGG--WDLYMVSAYFQYSDPI---DPYLHRLGNILDRLR------------------GARVVICADTNAHS 132 (240)
T ss_dssp CSSEEEEEETT--TTEEEEEEECCTTSCS---HHHHHHHHHHHHHTT------------------TSCEEEEEECCCCC
T ss_pred CCCEEEEEEee--ccEEEEEEEcCCCCch---hHHHHHHHHHHHhcC------------------CCcEEEEEeccccc
Confidence 46776666543 5688999999998642 222333334433210 13589999999543
No 30
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=83.37 E-value=1.1 Score=47.05 Aligned_cols=75 Identities=7% Similarity=-0.028 Sum_probs=39.0
Q ss_pred CeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcC-CCCccCCCCCCCCccccccceEEEeccccceeccCHHHHHHHHH
Q 039092 321 QTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTR-FPKVHGIGDENSPQTILEHDRIIWLGDLNYRIALSYRFAKALVE 399 (535)
Q Consensus 321 ~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~-F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYRI~l~~~~v~~li~ 399 (535)
+..|+++|+||..+.... .-|-.++..|++.+. |....+.....+. .-...-.+|++||||-- +...+-+++.
T Consensus 194 ~~~l~V~nTHL~~~p~~~--~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~-~~~~~~PvIl~GDFNs~---P~s~vy~~L~ 267 (398)
T 3ngq_A 194 KQLLIVANAHMHWDPEYS--DVKLIQTMMFVSEVKNILEKASSRPGSPT-ADPNSIPLVLCADLNSL---PDSGVVEYLS 267 (398)
T ss_dssp CCEEEEEEEECCCCTTCH--HHHHHHHHHHHHHHHHHHCC--------------CCCEEEEEECSCC---TTSHHHHHHH
T ss_pred CcEEEEEEeCcCCCCCCH--HHHHHHHHHHHHHHHHHHHHhhccccccc-ccCCCCceEEEeeCCCC---CCCHHHHHHh
Confidence 457999999999976432 346667766665431 1100000000000 00012358999999954 4445555555
Q ss_pred hc
Q 039092 400 MR 401 (535)
Q Consensus 400 ~~ 401 (535)
.+
T Consensus 268 ~G 269 (398)
T 3ngq_A 268 NG 269 (398)
T ss_dssp HT
T ss_pred cC
Confidence 43
No 31
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=74.92 E-value=4 Score=40.61 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=35.7
Q ss_pred CceEEEEEEEEcCeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEecccc
Q 039092 309 NKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLN 384 (535)
Q Consensus 309 NKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLN 384 (535)
..|.+.| .+.+ +.|++.||.+.... .|.+-+..|...+. ... ..|. ..+...+++||||
T Consensus 121 ~R~~l~i--~i~g--~~f~s~Hl~~~~~~----ea~~~v~~I~~~~~--~~~-----~~~~--~~~~~~ii~GDFN 179 (261)
T 1sr4_B 121 SRPAVGI--RIGT--DVFFTVHALATGGS----DAVSLIRNIFTTFN--SSS-----SPPE--RRVYSWMVVGDFN 179 (261)
T ss_dssp CCCEEEE--EETT--EEEEEEECCTTTTT----THHHHHHHHHHHHH--C--------CGG--GGGCEEEEEEECS
T ss_pred CcceEEE--EECC--eEEEEeCCCCCCCc----hHHHHHHHHHHHHH--hcc-----cCCc--ccCCcEEEEeeCC
Confidence 6788877 4777 99999999998521 24444555554321 000 0011 1235789999999
No 32
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=50.57 E-value=13 Score=37.19 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=38.1
Q ss_pred CceEEEEEEEEcCeEEEEEcccCCCCCCCccHHHHHHHHHHHHHhcCCCCccCCCCCCCCccccccceEEEeccccce
Q 039092 309 NKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEIIRKTRFPKVHGIGDENSPQTILEHDRIIWLGDLNYR 386 (535)
Q Consensus 309 NKGaVsvs~~i~~ts~cFVn~HLaAge~e~d~~rRN~D~~eIlr~~~F~~~~~~~~~~~p~~I~dhD~ifw~GDLNYR 386 (535)
....++|++ . .+.|.+.|+.+..+. .|.+.+..|...++= .|..+..+--.+++||||=.
T Consensus 130 ~Rp~lgiri--~--~~~ff~tHa~a~~g~----da~a~v~~I~~~~~~----------~~~~~~~~~pwii~GDFNr~ 189 (262)
T 2f1n_A 130 GRPLLGIRI--G--NDAFFTAHAIAMRNN----DAPALVEEVYNFFRD----------SRDPVHQALNWMILGDFNRE 189 (262)
T ss_dssp CCCEEEEEE--T--TEEEEEEECCSSSSC----SHHHHHHHHHHHHHT----------CSSHHHHTCEEEEEEECSSC
T ss_pred CCceEEEEE--C--CEEEEEEEecCCCCc----cHHHHHHHHHHHHhc----------CcccccCCCcEEEEecCCCC
Confidence 677777776 2 488999999998432 267777777764310 11111111358999999954
No 33
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=28.00 E-value=12 Score=40.34 Aligned_cols=17 Identities=41% Similarity=0.790 Sum_probs=14.6
Q ss_pred ccccceEEEecccccee
Q 039092 371 ILEHDRIIWLGDLNYRI 387 (535)
Q Consensus 371 I~dhD~ifw~GDLNYRI 387 (535)
+.+++.||+=||||||=
T Consensus 374 L~~S~LVIFKGDLNYRK 390 (471)
T 3pt1_A 374 LQKSNLVIFKGDLNYRK 390 (471)
T ss_dssp HTTCSEEEEEHHHHHHH
T ss_pred HhhCcEEEEecchhhhh
Confidence 45689999999999984
No 34
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=23.51 E-value=21 Score=32.31 Aligned_cols=37 Identities=27% Similarity=0.496 Sum_probs=22.8
Q ss_pred cceEEEEecccCCCCCCCCC----CchhhcCCCCCCcEEEEc
Q 039092 89 GHRIFVATWNVAGKSPPSYL----NLEDWLQTSPPADIYVLG 126 (535)
Q Consensus 89 ~~rifvgTWNVgG~~P~~~L----dl~dwL~~~~~aDIYVlG 126 (535)
...+-|-||||-|..+...- .|.+||... .+||-.|=
T Consensus 11 ~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~~-~pDIi~LQ 51 (256)
T 4fva_A 11 GFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKNV-NPDILFLQ 51 (256)
T ss_dssp TCEEEEEEEECCTTCCTTHHHHHHHHHHHHHHH-CCSEEEEE
T ss_pred CCEEEEEEEecCCCCCcCHHHHHHHHHHHHHHc-CCCEEEEE
Confidence 34788999999875443211 144555543 46887775
No 35
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=22.64 E-value=12 Score=35.52 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=25.2
Q ss_pred eEEEEecccCCCCCCCCCCchhhcCCCCCCcEEEEc
Q 039092 91 RIFVATWNVAGKSPPSYLNLEDWLQTSPPADIYVLG 126 (535)
Q Consensus 91 rifvgTWNVgG~~P~~~Ldl~dwL~~~~~aDIYVlG 126 (535)
.+=|.||||.|.--..+. |.+||... .+||=.|=
T Consensus 7 ~mki~s~Nvn~~r~~~~~-l~~~l~~~-~~DIl~LQ 40 (240)
T 2ei9_A 7 RLRIGQINLGGAEDATRE-LPSIARDL-GLDIVLVQ 40 (240)
T ss_dssp EEEEEEEECTTCHHHHHT-HHHHHHHH-TCSEEEEE
T ss_pred cceEEEEecCccHHHHHH-HHHHHHHc-CCCEEEee
Confidence 466899999987544444 88999774 57988774
No 36
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=22.08 E-value=22 Score=33.46 Aligned_cols=12 Identities=42% Similarity=0.562 Sum_probs=10.4
Q ss_pred ccCCCcCccceE
Q 039092 483 RFSDHRPVYSIF 494 (535)
Q Consensus 483 ~~SDHrPV~A~F 494 (535)
..|||.||.+.|
T Consensus 248 ~~SDH~PV~~~l 259 (260)
T 2a40_B 248 AISDHYPVEVTL 259 (260)
T ss_dssp HHCSBCCEEEEB
T ss_pred hcCCCCeEEEEe
Confidence 579999999876
Done!