BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039095
(492 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 42 QCKVCGKDFESLKALYGHMXXXXXXXXXXIQCKECGKALLSAKSLSNHMRVHS-QKLRAC 100
+C CGK F K L H +C ECGK+ +L H R H+ +K AC
Sbjct: 51 KCPECGKSFSDKKDLTRHQRTHTGEKP--YKCPECGKSFSQRANLRAHQRTHTGEKPYAC 108
Query: 101 NESG 104
E G
Sbjct: 109 PECG 112
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 43 CKVCGKDFESLKALYGHMXXXXXXXXXXIQCKECGKALLSAKSLSNHMRVHS-QKLRACN 101
C CGK F L H +C ECGK+ K L+ H R H+ +K C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKP--YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 102 ESG 104
E G
Sbjct: 82 ECG 84
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRS-SLPVKTTMFTETEPHSKLVKLECIEDLM 399
E +C C K F R L HQR H+ ++ + P F S+L L
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSF------SQLAHLR-AHQRT 127
Query: 400 QRGNKEHTCRICLKVFATGQALGGHKRAHL 429
G K + C C K F+ L H+R H
Sbjct: 128 HTGEKPYKCPECGKSFSREDNLHTHQRTHT 157
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 42 QCKVCGKDFESLKALYGHMXXXXXXXXXXIQCKECGKALLSAKSLSNHMRVHS-QKLRAC 100
+C CGK F L H C ECGK+ L H R H+ +K C
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKP--YACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
Query: 101 NESG 104
E G
Sbjct: 137 PECG 140
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 42 QCKVCGKDFESLKALYGHMXXXXXXXXXXIQCKECGKALLSAKSLSNHMRVHSQK 96
+C CGK F L+ H +C ECGK+ +L+ H R H+ K
Sbjct: 135 KCPECGKSFSREDNLHTHQRTHTGEKP--YKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSS 372
E +C C K F R AL HQR H+ K++S
Sbjct: 159 EKPYKCPECGKSFSRRDALNVHQRTHTGKKTS 190
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 28/100 (28%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLPVKTTMFTETEPHSKLVKLECIEDLMQ 400
E +C C K F ++ L HQR H+ ++ P K EC + Q
Sbjct: 47 EKPYKCPECGKSFSDKKDLTRHQRTHTGEK---PYKCP--------------ECGKSFSQ 89
Query: 401 RGN-----------KEHTCRICLKVFATGQALGGHKRAHL 429
R N K + C C K F+ L H+R H
Sbjct: 90 RANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E C C K F R++L HQR+HS K+ S P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 72 QCKECGKALLSAKSLSNHMRVHSQKLRACNESG 104
+C CGKA +SLS H R+HS K + SG
Sbjct: 14 ECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG 46
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 42 QCKVCGKDFESLKALYGHMXXXXXXXXXXIQCKECGKALLSAKSLSNHMRVHS 94
+C+VCGK F L HM +CK C A + SL+ H+R+HS
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKP--YKCKTCDYAAADSSSLNKHLRIHS 60
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 42 QCKVCGKDFESLKALYGHMXXXXXXXXXXIQCKECGKALLSAKSLSNHMRVHSQK 96
+C CGK F L H +C ECGK+ + LS H R H K
Sbjct: 34 KCPECGKSFSQSSDLQKHQRTHTGEKP--YKCPECGKSFSRSDHLSRHQRTHQNK 86
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRS-SLPVKTTMFTETEPHSKLVKLECIEDLM 399
E +C C K F L HQR H+ ++ P F+++ S L K +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQS---SDLQKHQ----RT 54
Query: 400 QRGNKEHTCRICLKVFATGQALGGHKRAHLVK 431
G K + C C K F+ L H+R H K
Sbjct: 55 HTGEKPYKCPECGKSFSRSDHLSRHQRTHQNK 86
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 71 IQCKECGKALLSAKSLSNHMRVHS-QKLRACNESG 104
+C ECGK+ + +L H R H+ +K C E G
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECG 39
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 42 QCKVCGKDFESLKALYGHMXXXXXXXXXXIQCKECGKALLSAKSLSNHMRVHS 94
+C CGK F L H +C ECGKA + L H RVH+
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKP--YKCDECGKAFIQRSHLIGHHRVHT 70
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E +C C K F R L GH R+HS ++SS P
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 71 IQCKECGKALLSAKSLSNHMRVHSQKLRACNESG 104
+C ECGK L+ H+R+HS++ + SG
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGPSSG 46
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E +C C K+F L HQR+H+ + S P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 72 QCKECGKALLSAKSLSNHMRVHS 94
+C ECGK L+NH R+H+
Sbjct: 14 KCNECGKVFTQNSHLANHQRIHT 36
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 71 IQCKECGKALLSAKSLSNHMRVHS 94
++C+ECGK ++ +L H+R+HS
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHS 26
>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
Cys2his2 Zinc Finger Induces Structural Rearrangements
Of Typical Dna Base Determinant Positions
pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain From
Arabidopsis Thaliana Superman Protein
Length = 39
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 404 KEHTCRICLKVFATGQALGGHKRAH 428
+ +TC C + F + QALGGH H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 72 QCKECGKALLSAKSLSNHMRVHS 94
QC ECGKA L+ H RVH+
Sbjct: 14 QCNECGKAFSQTSKLARHQRVHT 36
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 73 CKECGKALLSAKSLSNHMRVHSQKLRACNESG 104
C CGKA + + L+ H+RVH+Q+ + SG
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSGPSSG 46
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E RC C K F R L HQ++H+ ++ S P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 43 CKVCGKDFESLKALYGHMXXXXXXXXXXIQCKECGKALLSAKSLSNHMRVHS 94
C CGK F L H +C ECGKA L NH R+H+
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKP--YKCLECGKAFSQNSGLINHQRIHT 66
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E RC C K F + L HQR+H+ ++ S P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 72 QCKECGKALLSAKSLSNHMRVHS 94
+C ECGKA +L+ H R+H+
Sbjct: 14 RCGECGKAFAQKANLTQHQRIHT 36
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E RC C+K F R AL H+ +H+ ++ S P
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKPSGP 43
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E +C C K FC R L H +H+A++ S P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 71 IQCKECGKALLSAKSLSNHMRVHS 94
+CKECGKA L++H+R+H+
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHT 36
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 72 QCKECGKALLSAKSLSNHMRVH 93
+C ECGKA + +LS H R+H
Sbjct: 14 ECSECGKAFIQKSTLSMHQRIH 35
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E C C K F R +L HQ +H+ K+ S P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 72 QCKECGKALLSAKSLSNHMRVHSQKLRACNESG 104
+C ECGK L+NH R+H+ + + SG
Sbjct: 14 KCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG 46
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E +C C K+F L H R+H+ ++ S P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 72 QCKECGKALLSAKSLSNHMRVHSQKLRACNESG 104
+CKECGKA L H RVH+ + + SG
Sbjct: 14 ECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG 46
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E +C+ C K F L HQR+H+ ++ S P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 73 CKECGKALLSAKSLSNHMRVHS 94
C+ECGKA + LS H RVH+
Sbjct: 13 CQECGKAFTQSSCLSIHRRVHT 34
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 43 CKVCGKDFESLKALYGHMXXXXXXXXXXIQCKECGKALLSAKSLSNHMRVHSQK 96
C CGK + L H C ECGK ++ H++VH K
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPR--SCPECGKCFRDQSEVNRHLKVHQNK 58
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E C C K F + L HQR H+ ++ S P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 340 KESEIRCQACNKIFCSRRALGGHQRMH 366
KE +CQ C K FC R L H+ +H
Sbjct: 70 KEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 43 CKVCGKDFESLKALYGHMXXXXXXXXXXIQCKECGKALLSAKSLSNHMRVHSQ 95
C +C K F L H +C+ECGK +++L+ H +H Q
Sbjct: 48 CDICHKAFRRQDHLRDH--RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQ 98
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 73 CKECGKALLSAKSLSNHMRVHS 94
CKECGK+ A L H RVHS
Sbjct: 15 CKECGKSFRWASCLLKHQRVHS 36
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E +C C K+F L HQR+H+ ++ S P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E +C C K+F L HQ++H+ ++ S P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 73 CKECGKALLSAKSLSNHMRVHSQKLRACNESG 104
C ECGKA S L HMR HS + + SG
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG 46
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 73 CKECGKALLSAKSLSNHMRVHSQKLRACNESG 104
C+ECGKA + L H R+H+ + + SG
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGPSSG 46
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E C C K F +L HQR+HS ++ S P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E +C C K F L HQR+H+ ++ S P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 72 QCKECGKALLSAKSLSNHMRVHS 94
+C ECGKA L+ H R+H+
Sbjct: 14 KCNECGKAFSQTSKLARHQRIHT 36
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E +C+ C K + S+ L HQ++H+ +R S P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 72 QCKECGKALLSAKSLSNHMRVHSQKLRACNESG 104
+C ECGKA + +L+ H +H+ + R+ SG
Sbjct: 14 KCYECGKAFRTRSNLTTHQVIHTGEKRSGPSSG 46
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 340 KESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
KE +C C K F +R L HQ +H+ ++ S P
Sbjct: 9 KEKPYKCYECGKAFRTRSNLTTHQVIHTGEKRSGP 43
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E+ C C K+F + L HQ++H+ +R S P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E C+ C+K F + L HQ+ H+ ++ S P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 344 IRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
+C C K F +L HQR+H+ ++ S P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 72 QCKECGKALLSAKSLSNHMRVHS 94
QCKECGK+ SL+ H R+H+
Sbjct: 12 QCKECGKSFSQRGSLAVHERLHT 34
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E +C C K F +R +L HQ HS ++ S P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E +C+ C K F L HQR+H+ ++ S P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 71 IQCKECGKALLSAKSLSNHMRVHS 94
QC+ECGK L +H RVH+
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHT 36
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E +C C K F R AL H ++H+ ++ S P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 399 MQRGNKEHTCRICLKVFATGQALGGHKRAH 428
+ G K CRIC++ F+ +L H R H
Sbjct: 28 IHTGQKPFQCRICMRNFSQQASLNAHIRTH 57
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 71 IQCKECGKALLSAKSLSNHMRVHSQKLRACNESG 104
+C ECGKA +LS H ++H+ + + SG
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG 46
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 73 CKECGKALLSAKSLSNHMRVHSQKLRACNESG 104
C ECGKA S L HMR H+ + + SG
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTGEKPSGPSSG 44
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E +C C K F + HQR+H+ +R S P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 73 CKECGKALLSAKSLSNHMRVHS 94
C ECGK + LS H R+HS
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHS 34
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 341 ESEIRCQACNKIFCSRRALGGHQRMHSAKRSSLP 374
E +C C K+F L H+R+H+ + S P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,663,415
Number of Sequences: 62578
Number of extensions: 462937
Number of successful extensions: 1677
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1401
Number of HSP's gapped (non-prelim): 254
length of query: 492
length of database: 14,973,337
effective HSP length: 103
effective length of query: 389
effective length of database: 8,527,803
effective search space: 3317315367
effective search space used: 3317315367
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 53 (25.0 bits)