Query 039096
Match_columns 554
No_of_seqs 374 out of 3382
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:15:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 3.4E-23 7.4E-28 237.1 17.0 436 5-524 71-560 (968)
2 PLN00113 leucine-rich repeat r 99.9 3.7E-23 8E-28 236.8 15.2 448 6-523 96-583 (968)
3 KOG4341 F-box protein containi 99.9 5.7E-23 1.2E-27 196.1 7.7 300 80-419 139-459 (483)
4 KOG4341 F-box protein containi 99.9 3.7E-22 8E-27 190.6 7.8 307 108-525 138-466 (483)
5 KOG4194 Membrane glycoprotein 99.6 2.8E-17 6E-22 163.2 -0.6 292 75-431 98-411 (873)
6 cd00116 LRR_RI Leucine-rich re 99.6 3.1E-13 6.7E-18 135.0 20.7 282 18-359 16-315 (319)
7 KOG4194 Membrane glycoprotein 99.5 6.1E-16 1.3E-20 153.8 -0.0 265 80-426 79-355 (873)
8 KOG0444 Cytoskeletal regulator 99.5 9.2E-16 2E-20 153.5 -1.9 260 194-522 101-373 (1255)
9 cd00116 LRR_RI Leucine-rich re 99.5 1.2E-12 2.7E-17 130.6 19.9 287 68-420 12-315 (319)
10 PLN03210 Resistant to P. syrin 99.5 2E-13 4.4E-18 157.4 12.8 125 237-391 779-903 (1153)
11 KOG2120 SCF ubiquitin ligase, 99.4 2.2E-13 4.7E-18 125.4 5.7 193 181-414 195-389 (419)
12 KOG2120 SCF ubiquitin ligase, 99.4 5.4E-13 1.2E-17 122.8 5.1 202 54-318 186-389 (419)
13 PLN03210 Resistant to P. syrin 99.4 2.1E-12 4.6E-17 149.0 11.2 42 75-119 554-600 (1153)
14 KOG1947 Leucine rich repeat pr 99.3 1.5E-11 3.3E-16 130.2 11.0 124 237-362 244-373 (482)
15 KOG0444 Cytoskeletal regulator 99.2 2E-13 4.3E-18 137.0 -5.4 322 23-424 30-375 (1255)
16 KOG0618 Serine/threonine phosp 99.2 7.7E-13 1.7E-17 138.8 -1.4 82 22-121 43-127 (1081)
17 KOG1947 Leucine rich repeat pr 99.2 2.8E-11 6.1E-16 128.1 9.8 40 75-117 184-223 (482)
18 KOG1909 Ran GTPase-activating 99.2 7.1E-11 1.5E-15 111.6 9.8 266 19-328 24-310 (382)
19 KOG1909 Ran GTPase-activating 99.2 1.2E-10 2.6E-15 110.1 9.8 286 72-410 23-322 (382)
20 KOG0472 Leucine-rich repeat pr 98.8 2.8E-11 6E-16 116.0 -8.5 43 480-526 501-543 (565)
21 PRK15387 E3 ubiquitin-protein 98.8 3.3E-09 7.1E-14 114.7 4.8 31 352-386 423-453 (788)
22 KOG0618 Serine/threonine phosp 98.8 4.9E-10 1.1E-14 118.2 -2.5 123 237-386 360-484 (1081)
23 KOG3207 Beta-tubulin folding c 98.7 9.2E-09 2E-13 100.2 3.5 102 149-273 119-233 (505)
24 KOG3207 Beta-tubulin folding c 98.7 2.5E-09 5.4E-14 104.1 -1.1 115 76-234 118-232 (505)
25 PRK15387 E3 ubiquitin-protein 98.7 2.2E-08 4.8E-13 108.4 5.7 258 7-373 205-464 (788)
26 KOG0472 Leucine-rich repeat pr 98.6 3.9E-09 8.5E-14 101.5 -1.6 115 78-233 182-306 (565)
27 COG5238 RNA1 Ran GTPase-activa 98.3 2.8E-06 6E-11 78.2 9.0 217 75-323 26-249 (388)
28 PRK15370 E3 ubiquitin-protein 98.2 2.9E-06 6.2E-11 92.7 7.9 92 5-119 180-273 (754)
29 KOG3665 ZYG-1-like serine/thre 98.1 3.9E-06 8.4E-11 90.8 5.8 155 237-419 123-282 (699)
30 COG5238 RNA1 Ran GTPase-activa 98.1 2E-05 4.2E-10 72.7 9.4 39 261-300 213-253 (388)
31 PF14580 LRR_9: Leucine-rich r 98.1 6E-07 1.3E-11 79.7 -0.4 13 261-273 87-99 (175)
32 KOG4237 Extracellular matrix p 98.1 2.1E-06 4.6E-11 83.0 2.9 38 75-117 87-124 (498)
33 PF14580 LRR_9: Leucine-rich r 97.9 2.9E-05 6.2E-10 69.1 7.4 129 24-205 18-149 (175)
34 PRK15370 E3 ubiquitin-protein 97.8 0.00012 2.7E-09 80.1 11.0 94 5-120 201-295 (754)
35 KOG4658 Apoptotic ATPase [Sign 97.8 3E-05 6.5E-10 86.2 6.2 40 75-119 567-606 (889)
36 KOG4237 Extracellular matrix p 97.6 1E-05 2.2E-10 78.5 -0.3 85 283-386 269-354 (498)
37 KOG3665 ZYG-1-like serine/thre 97.5 0.00019 4.2E-09 77.8 7.6 157 79-296 122-282 (699)
38 KOG4658 Apoptotic ATPase [Sign 97.5 0.00013 2.8E-09 81.3 5.5 106 1-119 522-629 (889)
39 KOG1259 Nischarin, modulator o 97.4 6.3E-05 1.4E-09 70.4 1.7 17 144-160 175-191 (490)
40 KOG0617 Ras suppressor protein 97.4 1.7E-05 3.6E-10 68.1 -2.4 25 473-499 164-188 (264)
41 KOG3864 Uncharacterized conser 97.4 0.00014 3E-09 64.5 3.2 61 240-302 129-189 (221)
42 KOG3864 Uncharacterized conser 97.4 0.0001 2.3E-09 65.3 2.3 84 237-325 102-185 (221)
43 KOG2982 Uncharacterized conser 97.3 0.00039 8.4E-09 65.3 5.5 84 51-143 69-152 (418)
44 PF13855 LRR_8: Leucine rich r 97.3 0.00027 5.9E-09 51.1 3.3 57 316-386 1-57 (61)
45 PF13855 LRR_8: Leucine rich r 97.1 0.00052 1.1E-08 49.6 3.1 60 351-423 1-60 (61)
46 KOG2982 Uncharacterized conser 97.1 0.00026 5.6E-09 66.4 1.7 44 74-120 66-109 (418)
47 KOG1259 Nischarin, modulator o 97.0 0.00014 3.1E-09 68.1 -0.6 117 194-326 282-409 (490)
48 KOG0617 Ras suppressor protein 97.0 4.3E-05 9.2E-10 65.7 -4.0 88 16-120 22-114 (264)
49 KOG1859 Leucine-rich repeat pr 96.8 0.00033 7.2E-09 73.3 0.2 97 194-302 185-292 (1096)
50 smart00367 LRR_CC Leucine-rich 96.4 0.0039 8.4E-08 36.2 2.8 24 261-284 1-24 (26)
51 PLN03150 hypothetical protein; 95.8 0.024 5.2E-07 61.8 7.8 84 27-121 420-503 (623)
52 smart00367 LRR_CC Leucine-rich 95.3 0.013 2.8E-07 33.9 2.0 23 195-219 1-23 (26)
53 KOG2123 Uncharacterized conser 95.3 0.0037 7.9E-08 58.3 -0.7 105 78-230 18-123 (388)
54 KOG2123 Uncharacterized conser 95.3 0.0055 1.2E-07 57.2 0.3 84 192-295 37-123 (388)
55 KOG1859 Leucine-rich repeat pr 95.2 0.011 2.4E-07 62.4 2.5 104 289-423 187-290 (1096)
56 KOG4308 LRR-containing protein 95.2 0.0066 1.4E-07 63.2 0.8 213 81-335 89-309 (478)
57 PLN03150 hypothetical protein; 95.0 0.036 7.8E-07 60.4 5.6 89 318-430 420-508 (623)
58 KOG2739 Leucine-rich acidic nu 94.7 0.011 2.4E-07 54.9 0.8 63 237-302 66-129 (260)
59 KOG2739 Leucine-rich acidic nu 94.7 0.004 8.6E-08 57.8 -2.1 14 349-362 114-127 (260)
60 PRK15386 type III secretion pr 94.6 0.021 4.6E-07 57.5 2.5 131 149-325 50-186 (426)
61 PRK15386 type III secretion pr 94.4 0.089 1.9E-06 53.2 6.2 16 193-209 49-64 (426)
62 KOG4308 LRR-containing protein 94.1 0.018 4E-07 60.0 0.9 216 110-386 89-326 (478)
63 PF12799 LRR_4: Leucine Rich r 93.9 0.091 2E-06 34.8 3.6 35 79-119 1-35 (44)
64 KOG1644 U2-associated snRNP A' 93.7 0.047 1E-06 48.8 2.5 106 237-359 43-148 (233)
65 PF13516 LRR_6: Leucine Rich r 93.4 0.076 1.7E-06 29.9 2.3 23 261-284 1-23 (24)
66 PF12799 LRR_4: Leucine Rich r 93.4 0.11 2.3E-06 34.5 3.2 13 374-386 20-32 (44)
67 KOG1644 U2-associated snRNP A' 92.4 0.072 1.6E-06 47.7 1.7 76 75-159 60-148 (233)
68 COG4886 Leucine-rich repeat (L 92.1 0.11 2.4E-06 53.4 3.0 130 261-426 162-291 (394)
69 COG4886 Leucine-rich repeat (L 91.1 0.21 4.6E-06 51.3 3.8 122 237-386 164-285 (394)
70 smart00368 LRR_RI Leucine rich 89.7 0.65 1.4E-05 27.3 3.5 25 262-287 2-26 (28)
71 PF13516 LRR_6: Leucine Rich r 85.9 0.7 1.5E-05 25.9 2.0 21 108-132 2-22 (24)
72 KOG0531 Protein phosphatase 1, 84.6 0.42 9.2E-06 49.4 1.2 105 149-300 93-197 (414)
73 KOG0532 Leucine-rich repeat (L 81.6 0.26 5.6E-06 51.1 -1.7 103 353-497 145-247 (722)
74 smart00368 LRR_RI Leucine rich 79.3 3.5 7.7E-05 24.1 3.3 23 108-134 2-24 (28)
75 PF13306 LRR_5: Leucine rich r 75.3 2.9 6.3E-05 34.8 3.1 32 349-385 79-110 (129)
76 PF13504 LRR_7: Leucine rich r 73.5 2.5 5.4E-05 21.5 1.4 11 352-362 2-12 (17)
77 PF13306 LRR_5: Leucine rich r 70.8 8.9 0.00019 31.8 5.1 35 348-386 32-66 (129)
78 PF00560 LRR_1: Leucine Rich R 70.0 2.7 5.8E-05 23.0 1.1 11 352-362 1-11 (22)
79 KOG4579 Leucine-rich repeat (L 69.6 1.2 2.7E-05 37.5 -0.5 81 290-386 28-108 (177)
80 KOG0532 Leucine-rich repeat (L 67.0 0.61 1.3E-05 48.4 -3.3 102 237-362 144-245 (722)
81 KOG4579 Leucine-rich repeat (L 65.9 2.8 6.1E-05 35.5 0.9 59 238-302 55-113 (177)
82 KOG0531 Protein phosphatase 1, 65.7 1.3 2.8E-05 45.9 -1.4 103 194-327 93-197 (414)
83 KOG3763 mRNA export factor TAP 64.0 6.4 0.00014 41.0 3.2 72 52-126 217-288 (585)
84 KOG3763 mRNA export factor TAP 58.2 12 0.00025 39.2 3.9 80 240-322 222-307 (585)
85 smart00370 LRR Leucine-rich re 29.8 36 0.00077 19.1 1.3 12 351-362 2-13 (26)
86 smart00369 LRR_TYP Leucine-ric 29.8 36 0.00077 19.1 1.3 12 351-362 2-13 (26)
87 KOG3735 Tropomodulin and leiom 22.1 1.5E+02 0.0033 29.2 4.7 100 184-298 186-292 (353)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=3.4e-23 Score=237.11 Aligned_cols=436 Identities=17% Similarity=0.113 Sum_probs=218.8
Q ss_pred eeEEEEecCC--CchhchhhcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHH--HhcCCC
Q 039096 5 RTSITLRGNA--CNLNIVPLCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPL--LKHCKC 80 (554)
Q Consensus 5 r~~L~l~~~~--~~l~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~--~~~~~~ 80 (554)
.+.|+++++. +.+......+++|+.|+|+++ .+.+..+ ..+...+.+|++|+++++ .+.+. .+.+++
T Consensus 71 v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n-~~~~~ip--~~~~~~l~~L~~L~Ls~n------~l~~~~p~~~l~~ 141 (968)
T PLN00113 71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-QLSGPIP--DDIFTTSSSLRYLNLSNN------NFTGSIPRGSIPN 141 (968)
T ss_pred EEEEEecCCCccccCChHHhCCCCCCEEECCCC-ccCCcCC--hHHhccCCCCCEEECcCC------ccccccCccccCC
Confidence 4667777663 222223346889999999887 4443333 333336788888888733 22111 235778
Q ss_pred CcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhH----------HHHhccC
Q 039096 81 LTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWA----------VSIATNC 150 (554)
Q Consensus 81 L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~----------~~~~~~~ 150 (554)
|++|++++| .+...+|..+..+ ++|++|++++|.....+. ..+.++++|+.|. ......+
T Consensus 142 L~~L~Ls~n-~~~~~~p~~~~~l----~~L~~L~L~~n~l~~~~p-----~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 211 (968)
T PLN00113 142 LETLDLSNN-MLSGEIPNDIGSF----SSLKVLDLGGNVLVGKIP-----NSLTNLTSLEFLTLASNQLVGQIPRELGQM 211 (968)
T ss_pred CCEEECcCC-cccccCChHHhcC----CCCCEEECccCcccccCC-----hhhhhCcCCCeeeccCCCCcCcCChHHcCc
Confidence 888888876 4455666666655 588888888775322111 1224456666654 1112356
Q ss_pred CCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEee
Q 039096 151 PRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLK 230 (554)
Q Consensus 151 ~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~ 230 (554)
++|+.|++++| .++...... ...+++|++|++++|. +++..+ ..+ .++++|+.|+
T Consensus 212 ~~L~~L~L~~n--------------------~l~~~~p~~-l~~l~~L~~L~L~~n~-l~~~~p--~~l-~~l~~L~~L~ 266 (968)
T PLN00113 212 KSLKWIYLGYN--------------------NLSGEIPYE-IGGLTSLNHLDLVYNN-LTGPIP--SSL-GNLKNLQYLF 266 (968)
T ss_pred CCccEEECcCC--------------------ccCCcCChh-HhcCCCCCEEECcCce-eccccC--hhH-hCCCCCCEEE
Confidence 77777777654 112111111 2456777777776653 443322 244 5677777777
Q ss_pred cccccC------------cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEec
Q 039096 231 LGQLHS------------WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYC 298 (554)
Q Consensus 231 l~~~~~------------~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~ 298 (554)
+.++.- +|++|++++|. +.......+ ..+++|+.|++++|. +++..... ...+ ++|+.|++.+
T Consensus 267 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~-~~l~~L~~L~l~~n~-~~~~~~~~-~~~l-~~L~~L~L~~ 341 (968)
T PLN00113 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNS-LSGEIPELV-IQLQNLEILHLFSNN-FTGKIPVA-LTSL-PRLQVLQLWS 341 (968)
T ss_pred CcCCeeeccCchhHhhccCcCEEECcCCe-eccCCChhH-cCCCCCcEEECCCCc-cCCcCChh-HhcC-CCCCEEECcC
Confidence 765431 67777777765 443322222 336777777777766 33222111 2233 6777777777
Q ss_pred cCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCC
Q 039096 299 CENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECP 378 (554)
Q Consensus 299 c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~ 378 (554)
|...+. ++.....+++|+.|+++.+.+....+..+ ..+++|+.|++..+. +++..+..+..++
T Consensus 342 n~l~~~---~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~-----------~~~~~L~~L~l~~n~---l~~~~p~~~~~~~ 404 (968)
T PLN00113 342 NKFSGE---IPKNLGKHNNLTVLDLSTNNLTGEIPEGL-----------CSSGNLFKLILFSNS---LEGEIPKSLGACR 404 (968)
T ss_pred CCCcCc---CChHHhCCCCCcEEECCCCeeEeeCChhH-----------hCcCCCCEEECcCCE---ecccCCHHHhCCC
Confidence 653311 11222335667777775554433333333 334444444444333 2222223334444
Q ss_pred CCCEEEEeeeCCCCCCC--------------------CCCccccchhhhhccCCCccceeeecCCcccccccccccCCCC
Q 039096 379 ILENIRIKMEGDTREKP--------------------LLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQAAPYKAADL 438 (554)
Q Consensus 379 ~L~~L~l~~~~~c~~~~--------------------~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~~~~~~~~~L 438 (554)
+|+.|++. +|.... .+. ......+..+++|+.|+++.|.+.+..... ....+|
T Consensus 405 ~L~~L~L~---~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L 477 (968)
T PLN00113 405 SLRRVRLQ---DNSFSGELPSEFTKLPLVYFLDISNNNLQ---GRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRL 477 (968)
T ss_pred CCCEEECc---CCEeeeECChhHhcCCCCCEEECcCCccc---CccChhhccCCCCcEEECcCceeeeecCcc-cccccc
Confidence 44444444 331111 111 111112233455555555533333221111 011222
Q ss_pred chhhhHhhc-------ccccc-eecccccCCCCCcCCcchhhhhHHHHHHHhccccceeeeccchhhHHHHhhhcCCCCC
Q 039096 439 STWDRFVLN-------GIGNL-ILKELDYWPAKDPNASQRSLSRLAAALISNCITLRKVFVHCTAREHFMSMLISPTPNP 510 (554)
Q Consensus 439 ~~l~~~~l~-------~~~~l-~L~~l~~~~~~~~~~~~~~~~lp~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~ 510 (554)
..++..... .+..+ +|..++ .+.|...+.+|.. +.++++|+.|+++++............+++
T Consensus 478 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~------Ls~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~- 548 (968)
T PLN00113 478 ENLDLSRNQFSGAVPRKLGSLSELMQLK------LSENKLSGEIPDE--LSSCKKLVSLDLSHNQLSGQIPASFSEMPV- 548 (968)
T ss_pred eEEECcCCccCCccChhhhhhhccCEEE------CcCCcceeeCChH--HcCccCCCEEECCCCcccccCChhHhCccc-
Confidence 222211100 01111 122221 1223333455666 788889999998865544322222233777
Q ss_pred cccccccccccCCC
Q 039096 511 KKARDAQIKLDYYP 524 (554)
Q Consensus 511 ~~L~~l~l~~~~~~ 524 (554)
|+.|++.++.+.
T Consensus 549 --L~~L~Ls~N~l~ 560 (968)
T PLN00113 549 --LSQLDLSQNQLS 560 (968)
T ss_pred --CCEEECCCCccc
Confidence 999999988763
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=3.7e-23 Score=236.82 Aligned_cols=448 Identities=15% Similarity=0.056 Sum_probs=213.2
Q ss_pred eEEEEecCCCchhchh----hcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCC
Q 039096 6 TSITLRGNACNLNIVP----LCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCL 81 (554)
Q Consensus 6 ~~L~l~~~~~~l~~l~----~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L 81 (554)
+.|+++++. .-..+| ..+++|++|+++++ .+.+..+ . . .+++|++|+++++.. ...+...++.+++|
T Consensus 96 ~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p---~-~-~l~~L~~L~Ls~n~~--~~~~p~~~~~l~~L 166 (968)
T PLN00113 96 QTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIP---R-G-SIPNLETLDLSNNML--SGEIPNDIGSFSSL 166 (968)
T ss_pred CEEECCCCc-cCCcCChHHhccCCCCCEEECcCC-ccccccC---c-c-ccCCCCEEECcCCcc--cccCChHHhcCCCC
Confidence 567887773 111233 36788888888887 4433222 1 1 567788888873321 11223346677888
Q ss_pred cEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhH-----------HHHhccC
Q 039096 82 TSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWA-----------VSIATNC 150 (554)
Q Consensus 82 ~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~-----------~~~~~~~ 150 (554)
++|++++| .+...+|..+..+ ++|++|++++|.....+ ...+.++++|+.|. ..+ ..+
T Consensus 167 ~~L~L~~n-~l~~~~p~~~~~l----~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l 235 (968)
T PLN00113 167 KVLDLGGN-VLVGKIPNSLTNL----TSLEFLTLASNQLVGQI-----PRELGQMKSLKWIYLGYNNLSGEIPYEI-GGL 235 (968)
T ss_pred CEEECccC-cccccCChhhhhC----cCCCeeeccCCCCcCcC-----ChHHcCcCCccEEECcCCccCCcCChhH-hcC
Confidence 88888776 3455556656555 47888888777532211 12224455666554 223 356
Q ss_pred CCCCEEEecccccccccCCC-CCCCCCcc---ccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCC
Q 039096 151 PRLTLLHLAETSTLAAMRGD-PDDDGFTA---EDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNL 226 (554)
Q Consensus 151 ~~L~~L~l~~c~~l~~~~~~-~~~~g~~~---~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L 226 (554)
++|++|++++|......... .....+.. ..+.+.+..... ...+++|++|++++|. +++..+ ..+ .++++|
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~-l~~~~p--~~~-~~l~~L 310 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNS-LSGEIP--ELV-IQLQNL 310 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCe-eccCCC--hhH-cCCCCC
Confidence 77888888765211000000 00000000 001111111111 1234455555555432 322221 122 345555
Q ss_pred cEeecccccC------------cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEE
Q 039096 227 KGLKLGQLHS------------WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVI 294 (554)
Q Consensus 227 ~~L~l~~~~~------------~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L 294 (554)
+.|++.++.- +|+.|++++|. +++.....+.. +++|+.|++++|. ++......+. .. ++|+.|
T Consensus 311 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~-~~~L~~L~Ls~n~-l~~~~p~~~~-~~-~~L~~L 385 (968)
T PLN00113 311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK-FSGEIPKNLGK-HNNLTVLDLSTNN-LTGEIPEGLC-SS-GNLFKL 385 (968)
T ss_pred cEEECCCCccCCcCChhHhcCCCCCEEECcCCC-CcCcCChHHhC-CCCCcEEECCCCe-eEeeCChhHh-Cc-CCCCEE
Confidence 5555544321 45555555554 33222222222 4555555555554 2211111111 11 455555
Q ss_pred EEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccC
Q 039096 295 KIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGL 374 (554)
Q Consensus 295 ~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l 374 (554)
++.+|.... .++.....+++|+.|++..+.+....+..+ ..+++|+.|+++++. +++.....+
T Consensus 386 ~l~~n~l~~---~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~-----------~~l~~L~~L~Ls~N~---l~~~~~~~~ 448 (968)
T PLN00113 386 ILFSNSLEG---EIPKSLGACRSLRRVRLQDNSFSGELPSEF-----------TKLPLVYFLDISNNN---LQGRINSRK 448 (968)
T ss_pred ECcCCEecc---cCCHHHhCCCCCCEEECcCCEeeeECChhH-----------hcCCCCCEEECcCCc---ccCccChhh
Confidence 555543221 111222346677777776555444444444 567777777776554 444444445
Q ss_pred cCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCcccccccccccCCCCchhhhHhhc-------
Q 039096 375 DECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQAAPYKAADLSTWDRFVLN------- 447 (554)
Q Consensus 375 ~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~~~~~~~~~L~~l~~~~l~------- 447 (554)
..+++|+.|+++ +|+....++ .....++|+.|+++.+.+++.....+..++.|..++.....
T Consensus 449 ~~l~~L~~L~L~---~n~~~~~~p--------~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 517 (968)
T PLN00113 449 WDMPSLQMLSLA---RNKFFGGLP--------DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517 (968)
T ss_pred ccCCCCcEEECc---CceeeeecC--------cccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCCh
Confidence 567777777776 553322222 11224566667776555555443333333344333222111
Q ss_pred ccccc-eecccccCCCCCcCCcchhhhhHHHHHHHhccccceeeeccchhhH-HHHhhhcCCCCCcccccccccccCC
Q 039096 448 GIGNL-ILKELDYWPAKDPNASQRSLSRLAAALISNCITLRKVFVHCTAREH-FMSMLISPTPNPKKARDAQIKLDYY 523 (554)
Q Consensus 448 ~~~~l-~L~~l~~~~~~~~~~~~~~~~lp~~~~l~~~~~L~~L~i~~~~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~ 523 (554)
.++.+ +|..++. +.|...+.+|.. ++++++|+.|+++++.... ++..... ++. |+.+++.++..
T Consensus 518 ~~~~l~~L~~L~L------s~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~---L~~l~ls~N~l 583 (968)
T PLN00113 518 ELSSCKKLVSLDL------SHNQLSGQIPAS--FSEMPVLSQLDLSQNQLSGEIPKNLGN-VES---LVQVNISHNHL 583 (968)
T ss_pred HHcCccCCCEEEC------CCCcccccCChh--HhCcccCCEEECCCCcccccCChhHhc-Ccc---cCEEeccCCcc
Confidence 11112 2222221 223334445665 6777778877777544432 2222223 555 77777776654
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.88 E-value=5.7e-23 Score=196.07 Aligned_cols=300 Identities=17% Similarity=0.217 Sum_probs=186.4
Q ss_pred CCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhH------------HHHh
Q 039096 80 CLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWA------------VSIA 147 (554)
Q Consensus 80 ~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~------------~~~~ 147 (554)
.|+.|.+.||..+.+. .+..+...|+++++|++.+|. .+++..+..+.+.|++|+.+. ..++
T Consensus 139 ~lk~LSlrG~r~v~~s---slrt~~~~CpnIehL~l~gc~---~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDS---SLRTFASNCPNIEHLALYGCK---KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred ccccccccccccCCcc---hhhHHhhhCCchhhhhhhcce---eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 4444444444332222 233333334444444444332 244444444444444444444 3344
Q ss_pred ccCCCCCEEEecccccccccCCCCCCCCCc-------cccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHH
Q 039096 148 TNCPRLTLLHLAETSTLAAMRGDPDDDGFT-------AEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALK 220 (554)
Q Consensus 148 ~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~-------~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~ 220 (554)
+.|++|++|++++|+.++....++...|.. .+|.....+.+..+..+++.+.++++..|..++|.+.+ .++
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~--~i~ 290 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW--LIA 290 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH--HHh
Confidence 556666666666653322211111111100 01234444555555555555555555555555555532 443
Q ss_pred hcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccC
Q 039096 221 SKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCE 300 (554)
Q Consensus 221 ~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 300 (554)
..|. .|++|+.++|.++++..+.++.+++++|+.|.+.+|..+++.|+..+...+ +.|+.+++..|.
T Consensus 291 ~~c~------------~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~-~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 291 CGCH------------ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC-PHLERLDLEECG 357 (483)
T ss_pred hhhh------------HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC-hhhhhhcccccc
Confidence 4444 445777778888899999999999999999999999999999999998888 899999999988
Q ss_pred CCChhHHHHHHhhcCCCccEEEeeee-eccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCC
Q 039096 301 NLGAVASCKALKPIRDRIQKLHIDCV-WDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPI 379 (554)
Q Consensus 301 ~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~ 379 (554)
.+ .+..+..++.+|+.|++|.++.+ .+++++...++ ........|..+.+.+|+. +++...+.+..|++
T Consensus 358 ~~-~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~-------~~~c~~~~l~~lEL~n~p~--i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 358 LI-TDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS-------SSSCSLEGLEVLELDNCPL--ITDATLEHLSICRN 427 (483)
T ss_pred ee-hhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh-------hccccccccceeeecCCCC--chHHHHHHHhhCcc
Confidence 77 45578888888999999999644 55666655552 2234567888888888887 77777777788899
Q ss_pred CCEEEEeeeCCCCCCCCCCccccchhhhhcc-CCCccceee
Q 039096 380 LENIRIKMEGDTREKPLLRDDKAWGLSCLTR-YPRLSKLVL 419 (554)
Q Consensus 380 L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~-~~~L~~L~l 419 (554)
|+.+++. +| ..++ ..++..+.. +|+++...+
T Consensus 428 Leri~l~---~~---q~vt---k~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 428 LERIELI---DC---QDVT---KEAISRFATHLPNIKVHAY 459 (483)
T ss_pred cceeeee---ch---hhhh---hhhhHHHHhhCccceehhh
Confidence 9998888 88 6666 556666655 777665444
No 4
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.86 E-value=3.7e-22 Score=190.59 Aligned_cols=307 Identities=22% Similarity=0.293 Sum_probs=186.8
Q ss_pred CCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhH------------HHHhccCCCCCEEEecccccccccCCCCCCCC
Q 039096 108 AILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWA------------VSIATNCPRLTLLHLAETSTLAAMRGDPDDDG 175 (554)
Q Consensus 108 ~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~------------~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g 175 (554)
..|+.|.++++ ..+.+..+..+..+||+++.|. ..+++.|++|++|++..|
T Consensus 138 g~lk~LSlrG~---r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c-------------- 200 (483)
T KOG4341|consen 138 GFLKELSLRGC---RAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSC-------------- 200 (483)
T ss_pred ccccccccccc---ccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhccc--------------
Confidence 47999999954 4588888888888888777776 445556666666666655
Q ss_pred CccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHH
Q 039096 176 FTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLV 255 (554)
Q Consensus 176 ~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~ 255 (554)
..+++..+..+..+|++|++|+++.|+.+++.+ ++.+.++|..++. +..++|....+..+.
T Consensus 201 -----~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g--v~~~~rG~~~l~~------------~~~kGC~e~~le~l~ 261 (483)
T KOG4341|consen 201 -----SSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG--VQALQRGCKELEK------------LSLKGCLELELEALL 261 (483)
T ss_pred -----chhHHHHHHHHHHhhhhHHHhhhccCchhhcCc--chHHhccchhhhh------------hhhcccccccHHHHH
Confidence 445666666666666666666666666666655 4455555555443 333345556666666
Q ss_pred HHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEe-eeeeccccchh
Q 039096 256 AIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHI-DCVWDGIRSSE 334 (554)
Q Consensus 256 ~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l-~~~~~~~~~~~ 334 (554)
....+++-+.++++..|..++|+++..+...+ ..|+.|..++|..+ ++..+..+..+|++|+.|.+ .|..+++.++.
T Consensus 262 ~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c-~~lq~l~~s~~t~~-~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft 339 (483)
T KOG4341|consen 262 KAAAYCLEILKLNLQHCNQLTDEDLWLIACGC-HALQVLCYSSCTDI-TDEVLWALGQHCHNLQVLELSGCQQFSDRGFT 339 (483)
T ss_pred HHhccChHhhccchhhhccccchHHHHHhhhh-hHhhhhcccCCCCC-chHHHHHHhcCCCceEEEeccccchhhhhhhh
Confidence 66666666666666666666666666666555 66666666666665 45566666666666666666 44455555555
Q ss_pred hhccCCccchhhhhcCCCCceEEeecccCCccCccccccC-cCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhcc---
Q 039096 335 AKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGL-DECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTR--- 410 (554)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l-~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~--- 410 (554)
.++ .+++.|+.+++..|.. .++.+...+ .+|+.|+++.++ .| ..++ |.|+..+..
T Consensus 340 ~l~----------rn~~~Le~l~~e~~~~--~~d~tL~sls~~C~~lr~lsls---hc---e~it---D~gi~~l~~~~c 398 (483)
T KOG4341|consen 340 MLG----------RNCPHLERLDLEECGL--ITDGTLASLSRNCPRLRVLSLS---HC---ELIT---DEGIRHLSSSSC 398 (483)
T ss_pred hhh----------cCChhhhhhcccccce--ehhhhHhhhccCCchhccCChh---hh---hhhh---hhhhhhhhhccc
Confidence 553 5666666666665553 333333333 556666666665 55 5555 444444433
Q ss_pred -CCCccceeee-cCCcccccccccccCCCCchhhhHhhcccccceecccccCCCCCcCCcchhhhhHHHHHHHhccccce
Q 039096 411 -YPRLSKLVLD-FGDTDGHNQAAPYKAADLSTWDRFVLNGIGNLILKELDYWPAKDPNASQRSLSRLAAALISNCITLRK 488 (554)
Q Consensus 411 -~~~L~~L~l~-c~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~l~L~~l~~~~~~~~~~~~~~~~lp~~~~l~~~~~L~~ 488 (554)
...|+.+.++ |..+++... ..+..|++|+.
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~L------------------------------------------------e~l~~c~~Ler 430 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATL------------------------------------------------EHLSICRNLER 430 (483)
T ss_pred cccccceeeecCCCCchHHHH------------------------------------------------HHHhhCcccce
Confidence 3344444444 443332211 12667778887
Q ss_pred eeec---cchhhHHHHhhhcCCCCCcccccccccccCCCC
Q 039096 489 VFVH---CTAREHFMSMLISPTPNPKKARDAQIKLDYYPP 525 (554)
Q Consensus 489 L~i~---~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 525 (554)
+++. +.+.+....+... +|+ +...-+.....|+
T Consensus 431 i~l~~~q~vtk~~i~~~~~~-lp~---i~v~a~~a~~t~p 466 (483)
T KOG4341|consen 431 IELIDCQDVTKEAISRFATH-LPN---IKVHAYFAPVTPP 466 (483)
T ss_pred eeeechhhhhhhhhHHHHhh-Ccc---ceehhhccCCCCc
Confidence 7666 4445566666677 888 7766666655554
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.63 E-value=2.8e-17 Score=163.21 Aligned_cols=292 Identities=15% Similarity=0.144 Sum_probs=137.4
Q ss_pred HhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhH------HHH--
Q 039096 75 LKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWA------VSI-- 146 (554)
Q Consensus 75 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~------~~~-- 146 (554)
+.++++|+++++..| ....+|...... .+|+.|+|.+|. ...++.+.+.. .|.|++|+ ..+
T Consensus 98 f~nl~nLq~v~l~~N--~Lt~IP~f~~~s----ghl~~L~L~~N~-I~sv~se~L~~----l~alrslDLSrN~is~i~~ 166 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKN--ELTRIPRFGHES----GHLEKLDLRHNL-ISSVTSEELSA----LPALRSLDLSRNLISEIPK 166 (873)
T ss_pred HhcCCcceeeeeccc--hhhhcccccccc----cceeEEeeeccc-cccccHHHHHh----HhhhhhhhhhhchhhcccC
Confidence 567888888888755 233444433222 578888888875 33455555544 35666665 111
Q ss_pred --hccCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCC
Q 039096 147 --ATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCV 224 (554)
Q Consensus 147 --~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~ 224 (554)
+..-.++++|+++++ .|++.+...+ .++.+|..|.|+. +.++.-. ...+ ++++
T Consensus 167 ~sfp~~~ni~~L~La~N--------------------~It~l~~~~F-~~lnsL~tlkLsr-NrittLp--~r~F-k~L~ 221 (873)
T KOG4194|consen 167 PSFPAKVNIKKLNLASN--------------------RITTLETGHF-DSLNSLLTLKLSR-NRITTLP--QRSF-KRLP 221 (873)
T ss_pred CCCCCCCCceEEeeccc--------------------cccccccccc-cccchheeeeccc-CcccccC--HHHh-hhcc
Confidence 112247888888763 3333332222 2344555566655 3354433 2344 5556
Q ss_pred CCcEeeccccc----------C--cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCcc
Q 039096 225 NLKGLKLGQLH----------S--WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLV 292 (554)
Q Consensus 225 ~L~~L~l~~~~----------~--~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~ 292 (554)
+|+.|++.... + +|+.|.+..|. |....-.+| .+|.++++|+|..|. +....-.-+. .+ ..|+
T Consensus 222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~F-y~l~kme~l~L~~N~-l~~vn~g~lf-gL-t~L~ 296 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAF-YGLEKMEHLNLETNR-LQAVNEGWLF-GL-TSLE 296 (873)
T ss_pred hhhhhhccccceeeehhhhhcCchhhhhhhhhhcC-cccccCcce-eeecccceeecccch-hhhhhccccc-cc-chhh
Confidence 66665554322 1 44455554443 221110111 125556666666554 2211100011 11 4555
Q ss_pred EEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccc
Q 039096 293 VIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVA 372 (554)
Q Consensus 293 ~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~ 372 (554)
.|+++++..- ....... ..|++|++|+++.+.++.-...++ ..+.+|+.|.++.+. ++.+...
T Consensus 297 ~L~lS~NaI~--rih~d~W-sftqkL~~LdLs~N~i~~l~~~sf-----------~~L~~Le~LnLs~Ns---i~~l~e~ 359 (873)
T KOG4194|consen 297 QLDLSYNAIQ--RIHIDSW-SFTQKLKELDLSSNRITRLDEGSF-----------RVLSQLEELNLSHNS---IDHLAEG 359 (873)
T ss_pred hhccchhhhh--eeecchh-hhcccceeEeccccccccCChhHH-----------HHHHHhhhhcccccc---hHHHHhh
Confidence 5555554211 0011111 225556666665555444444444 445556666665443 4444444
Q ss_pred cCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCcccccccc
Q 039096 373 GLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQAA 431 (554)
Q Consensus 373 ~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~~~ 431 (554)
.+..+.+|++|+++ .....-.+. | +-..+..+++|++|.+..|++...+-.+
T Consensus 360 af~~lssL~~LdLr---~N~ls~~IE---D-aa~~f~gl~~LrkL~l~gNqlk~I~krA 411 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLR---SNELSWCIE---D-AAVAFNGLPSLRKLRLTGNQLKSIPKRA 411 (873)
T ss_pred HHHHhhhhhhhcCc---CCeEEEEEe---c-chhhhccchhhhheeecCceeeecchhh
Confidence 44555556666554 221111111 1 1122333566666666555555444333
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.56 E-value=3.1e-13 Score=134.97 Aligned_cols=282 Identities=19% Similarity=0.142 Sum_probs=143.4
Q ss_pred hchhhcCCCCcEEeccCCccccccccc--CCCccCCCcccceeecccccccC-cccH---HHHHhcCCCCcEEEecCCCC
Q 039096 18 NIVPLCFDAVTNLQLSNISPWGHSLLF--SPSSSSMDPRLLADLLQMSFLCF-GAEF---VPLLKHCKCLTSVDLSSFYH 91 (554)
Q Consensus 18 ~~l~~~~~~L~~L~Ls~~~~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~-~~~l---~~~~~~~~~L~~L~L~~~~~ 91 (554)
..+...+++|+.|+++++ .+...... ...+. ..+.++.+.+++..... ...+ ...+..+++|++|++++|.
T Consensus 16 ~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~- 92 (319)
T cd00116 16 TELLPKLLCLQVLRLEGN-TLGEEAAKALASALR-PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA- 92 (319)
T ss_pred HHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHh-hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC-
Confidence 344456677999999888 33221110 01111 44456666665332110 1111 2234556677777777663
Q ss_pred CCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccC-CCCCEEEecccccccccCCC
Q 039096 92 WTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNC-PRLTLLHLAETSTLAAMRGD 170 (554)
Q Consensus 92 ~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~-~~L~~L~l~~c~~l~~~~~~ 170 (554)
+....+..+..+... ++|++|++++|. +++.+...+. ..+. .+ ++|++|++++|
T Consensus 93 ~~~~~~~~~~~l~~~-~~L~~L~ls~~~----~~~~~~~~l~----------~~l~-~~~~~L~~L~L~~n--------- 147 (319)
T cd00116 93 LGPDGCGVLESLLRS-SSLQELKLNNNG----LGDRGLRLLA----------KGLK-DLPPALEKLVLGRN--------- 147 (319)
T ss_pred CChhHHHHHHHHhcc-CcccEEEeeCCc----cchHHHHHHH----------HHHH-hCCCCceEEEcCCC---------
Confidence 333444445555433 457777777665 4444333331 1122 33 67777777664
Q ss_pred CCCCCCccccCCCCHH---HHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCC
Q 039096 171 PDDDGFTAEDARISEE---GLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCG 247 (554)
Q Consensus 171 ~~~~g~~~~~~~i~~~---~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~ 247 (554)
.++.. .+......+++|++|++++|. +++.+ +..++..++... +|++|++++|.
T Consensus 148 -----------~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~--~~~l~~~l~~~~---------~L~~L~L~~n~ 204 (319)
T cd00116 148 -----------RLEGASCEALAKALRANRDLKELNLANNG-IGDAG--IRALAEGLKANC---------NLEVLDLNNNG 204 (319)
T ss_pred -----------cCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHH--HHHHHHHHHhCC---------CCCEEeccCCc
Confidence 22322 223333455677777776643 65443 233332222111 34456666665
Q ss_pred CCCHHHHHHH---HhcCCCCcEEEecCCCCCCHHHHHHHHHHhc---CCccEEEEeccCCCC-hhHHHHHHhhcCCCccE
Q 039096 248 DLSDMSLVAI---GRGCSKLVKFEVEGCKNITVDGLRTLASLLR---ETLVVIKIYCCENLG-AVASCKALKPIRDRIQK 320 (554)
Q Consensus 248 ~l~~~~l~~l---~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~---~~L~~L~l~~c~~~~-~~~~l~~l~~~~~~L~~ 320 (554)
+++.+...+ ...+++|++|++++|. +++.++..+...+. +.|++|++.+|.... ....+......+++|++
T Consensus 205 -i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~ 282 (319)
T cd00116 205 -LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE 282 (319)
T ss_pred -cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccE
Confidence 555554433 2345678888887776 67777666665542 477777777775321 11222233333466777
Q ss_pred EEeeeeeccccchhhhccCCccchhhhhcC-CCCceEEee
Q 039096 321 LHIDCVWDGIRSSEAKATGNTSTIFSKTRW-KSLKELSFW 359 (554)
Q Consensus 321 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~ 359 (554)
++++.+.++..+...++ ...... +.|+.+++.
T Consensus 283 l~l~~N~l~~~~~~~~~-------~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 283 LDLRGNKFGEEGAQLLA-------ESLLEPGNELESLWVK 315 (319)
T ss_pred EECCCCCCcHHHHHHHH-------HHHhhcCCchhhcccC
Confidence 77766665555433331 111223 566666664
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.55 E-value=6.1e-16 Score=153.82 Aligned_cols=265 Identities=16% Similarity=0.153 Sum_probs=132.4
Q ss_pred CCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEec
Q 039096 80 CLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLA 159 (554)
Q Consensus 80 ~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~ 159 (554)
.-+.|++++| .+...-+..+..+| +|+++++.+|.. .. .|. ++....+|+.|++.
T Consensus 79 ~t~~LdlsnN-kl~~id~~~f~nl~----nLq~v~l~~N~L---------t~----IP~-------f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 79 QTQTLDLSNN-KLSHIDFEFFYNLP----NLQEVNLNKNEL---------TR----IPR-------FGHESGHLEKLDLR 133 (873)
T ss_pred ceeeeecccc-ccccCcHHHHhcCC----cceeeeeccchh---------hh----ccc-------ccccccceeEEeee
Confidence 4456777765 33443344455553 777777776641 11 111 12234567788886
Q ss_pred ccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccC---
Q 039096 160 ETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHS--- 236 (554)
Q Consensus 160 ~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~--- 236 (554)
++.. ..++.+.+. ..+.|+.|||+. +.++... ...+ ..-.++++|++++..-
T Consensus 134 ~N~I-----------------~sv~se~L~----~l~alrslDLSr-N~is~i~--~~sf-p~~~ni~~L~La~N~It~l 188 (873)
T KOG4194|consen 134 HNLI-----------------SSVTSEELS----ALPALRSLDLSR-NLISEIP--KPSF-PAKVNIKKLNLASNRITTL 188 (873)
T ss_pred cccc-----------------ccccHHHHH----hHhhhhhhhhhh-chhhccc--CCCC-CCCCCceEEeecccccccc
Confidence 5311 233444443 346777778876 3453322 1122 2335566666654321
Q ss_pred ---------cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHH
Q 039096 237 ---------WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVAS 307 (554)
Q Consensus 237 ---------~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~ 307 (554)
+|..|.++.|. ++......|- ++|+|+.|+|..|. |.......+ +.+ ++|+.|.+..+..-.-..+
T Consensus 189 ~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk-~L~~L~~LdLnrN~-irive~ltF-qgL-~Sl~nlklqrN~I~kL~DG 263 (873)
T KOG4194|consen 189 ETGHFDSLNSLLTLKLSRNR-ITTLPQRSFK-RLPKLESLDLNRNR-IRIVEGLTF-QGL-PSLQNLKLQRNDISKLDDG 263 (873)
T ss_pred ccccccccchheeeecccCc-ccccCHHHhh-hcchhhhhhccccc-eeeehhhhh-cCc-hhhhhhhhhhcCcccccCc
Confidence 56666666665 5554444443 36667777776665 332211111 222 5666666644321111111
Q ss_pred HHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEee
Q 039096 308 CKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKM 387 (554)
Q Consensus 308 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~ 387 (554)
....+.++++|++..+.+.......+ .+++.|+.|+++++. +..+...+-..|++|++|+++
T Consensus 264 ---~Fy~l~kme~l~L~~N~l~~vn~g~l-----------fgLt~L~~L~lS~Na---I~rih~d~WsftqkL~~LdLs- 325 (873)
T KOG4194|consen 264 ---AFYGLEKMEHLNLETNRLQAVNEGWL-----------FGLTSLEQLDLSYNA---IQRIHIDSWSFTQKLKELDLS- 325 (873)
T ss_pred ---ceeeecccceeecccchhhhhhcccc-----------cccchhhhhccchhh---hheeecchhhhcccceeEecc-
Confidence 11234556777776554433333333 566667777766544 444444444566777777776
Q ss_pred eCCCCCCCCCCccccchhhhhccCCCccceeeecCCccc
Q 039096 388 EGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDG 426 (554)
Q Consensus 388 ~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~ 426 (554)
. +.++ ...-..+..+.+|+.|.|+.|.++.
T Consensus 326 --~----N~i~---~l~~~sf~~L~~Le~LnLs~Nsi~~ 355 (873)
T KOG4194|consen 326 --S----NRIT---RLDEGSFRVLSQLEELNLSHNSIDH 355 (873)
T ss_pred --c----cccc---cCChhHHHHHHHhhhhcccccchHH
Confidence 2 2333 2222344445566666666555544
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.51 E-value=9.2e-16 Score=153.53 Aligned_cols=260 Identities=17% Similarity=0.147 Sum_probs=149.2
Q ss_pred CCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccC------------cccEEEecCCCCCCHHHHHHHHhcC
Q 039096 194 GLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHS------------WLESLSIKNCGDLSDMSLVAIGRGC 261 (554)
Q Consensus 194 ~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~------------~L~~L~l~~~~~l~~~~l~~l~~~~ 261 (554)
.+..|+.|||++ +++++.. ..+ .+.+++-+|+++..+. .|-.|++++|. +... ..-...+
T Consensus 101 ~l~dLt~lDLSh-NqL~EvP---~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~L--PPQ~RRL 172 (1255)
T KOG0444|consen 101 RLKDLTILDLSH-NQLREVP---TNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEML--PPQIRRL 172 (1255)
T ss_pred ccccceeeecch-hhhhhcc---hhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhc--CHHHHHH
Confidence 566777777776 3454332 233 4445556666554331 44466777765 3221 1112235
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCc
Q 039096 262 SKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNT 341 (554)
Q Consensus 262 ~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 341 (554)
..|++|+|++|+ +..--+..+... .+|+.|.+++.... ...++.-.....+|..++++++.+.. .+..+
T Consensus 173 ~~LqtL~Ls~NP-L~hfQLrQLPsm--tsL~vLhms~TqRT--l~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecl----- 241 (1255)
T KOG0444|consen 173 SMLQTLKLSNNP-LNHFQLRQLPSM--TSLSVLHMSNTQRT--LDNIPTSLDDLHNLRDVDLSENNLPI-VPECL----- 241 (1255)
T ss_pred hhhhhhhcCCCh-hhHHHHhcCccc--hhhhhhhcccccch--hhcCCCchhhhhhhhhccccccCCCc-chHHH-----
Confidence 667888888877 443333333221 45555666554321 11111112224557777887776433 23333
Q ss_pred cchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeec
Q 039096 342 STIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDF 421 (554)
Q Consensus 342 ~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c 421 (554)
.++++|+.|+++.+. ++.+... +..-.+|+.|+++ .. .++.. ..++.+++.|+.|.+..
T Consensus 242 ------y~l~~LrrLNLS~N~---iteL~~~-~~~W~~lEtLNlS---rN----QLt~L----P~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 242 ------YKLRNLRRLNLSGNK---ITELNMT-EGEWENLETLNLS---RN----QLTVL----PDAVCKLTKLTKLYANN 300 (1255)
T ss_pred ------hhhhhhheeccCcCc---eeeeecc-HHHHhhhhhhccc---cc----hhccc----hHHHhhhHHHHHHHhcc
Confidence 567888888886544 5555433 3455677888876 22 22211 13556678888888887
Q ss_pred CCcccccccccccCCCCchhhhHhhcccccc-eecccccCCCCCcCCcchhhhhHHHHHHHhccccceeeeccchhhHHH
Q 039096 422 GDTDGHNQAAPYKAADLSTWDRFVLNGIGNL-ILKELDYWPAKDPNASQRSLSRLAAALISNCITLRKVFVHCTAREHFM 500 (554)
Q Consensus 422 ~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~l-~L~~l~~~~~~~~~~~~~~~~lp~~~~l~~~~~L~~L~i~~~~~~~~~ 500 (554)
|.++..++.. ++|+| .|........ .+.. .|.. +..|..|+.|.+.......++
T Consensus 301 NkL~FeGiPS----------------GIGKL~~Levf~aanN---~LEl----VPEg--lcRC~kL~kL~L~~NrLiTLP 355 (1255)
T KOG0444|consen 301 NKLTFEGIPS----------------GIGKLIQLEVFHAANN---KLEL----VPEG--LCRCVKLQKLKLDHNRLITLP 355 (1255)
T ss_pred CcccccCCcc----------------chhhhhhhHHHHhhcc---cccc----Cchh--hhhhHHHHHhcccccceeech
Confidence 7777666543 34554 4444433222 1111 2555 889999999999987777777
Q ss_pred HhhhcCCCCCcccccccccccC
Q 039096 501 SMLISPTPNPKKARDAQIKLDY 522 (554)
Q Consensus 501 ~~~~~~~~~~~~L~~l~l~~~~ 522 (554)
....- +|. |..||+|++.
T Consensus 356 eaIHl-L~~---l~vLDlreNp 373 (1255)
T KOG0444|consen 356 EAIHL-LPD---LKVLDLRENP 373 (1255)
T ss_pred hhhhh-cCC---cceeeccCCc
Confidence 77777 888 9999999976
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.51 E-value=1.2e-12 Score=130.60 Aligned_cols=287 Identities=19% Similarity=0.117 Sum_probs=154.6
Q ss_pred cccHHHHHhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCC--HHHHHHHHHhCCChHhhHHH
Q 039096 68 GAEFVPLLKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYR--PQEIIEIIAARPNLNKWAVS 145 (554)
Q Consensus 68 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~--~~~l~~l~~~~~~L~~L~~~ 145 (554)
+..+...+..+.+|++|+++++. +.+.....+.......++|++|+++++. +. ...+..+ ...
T Consensus 12 ~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~----~~~~~~~~~~~----------~~~ 76 (319)
T cd00116 12 TERATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNE----TGRIPRGLQSL----------LQG 76 (319)
T ss_pred ccchHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccc----cCCcchHHHHH----------HHH
Confidence 34445556667778888888773 3322111222222233578888888765 22 2222222 122
Q ss_pred HhccCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCC
Q 039096 146 IATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVN 225 (554)
Q Consensus 146 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~ 225 (554)
+. .+++|++|++++|.. .......+..+... ++|++|++++|. +++.+ ...+...++.
T Consensus 77 l~-~~~~L~~L~l~~~~~-----------------~~~~~~~~~~l~~~-~~L~~L~ls~~~-~~~~~--~~~l~~~l~~ 134 (319)
T cd00116 77 LT-KGCGLQELDLSDNAL-----------------GPDGCGVLESLLRS-SSLQELKLNNNG-LGDRG--LRLLAKGLKD 134 (319)
T ss_pred HH-hcCceeEEEccCCCC-----------------ChhHHHHHHHHhcc-CcccEEEeeCCc-cchHH--HHHHHHHHHh
Confidence 33 477888888876511 00112333344444 668888888765 65543 2233222222
Q ss_pred CcEeecccccCcccEEEecCCCCCCHHHHHH---HHhcCCCCcEEEecCCCCCCHHHHHHHHHHhc--CCccEEEEeccC
Q 039096 226 LKGLKLGQLHSWLESLSIKNCGDLSDMSLVA---IGRGCSKLVKFEVEGCKNITVDGLRTLASLLR--ETLVVIKIYCCE 300 (554)
Q Consensus 226 L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~---l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~--~~L~~L~l~~c~ 300 (554)
+ ..+|+.|++++|. +++.+... ....+++|++|++++|. +++.++..+...++ ++|++|++++|.
T Consensus 135 ~--------~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 135 L--------PPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred C--------CCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 2 0134466666666 55433332 23346778888888877 77777666654441 488888888875
Q ss_pred CCChh-HHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccc----cCc
Q 039096 301 NLGAV-ASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVA----GLD 375 (554)
Q Consensus 301 ~~~~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~----~l~ 375 (554)
..... ..+......+++|++|+++.+.+++.....++ .......+.|++|++.+|. +++.... .+.
T Consensus 205 i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~------~~~~~~~~~L~~L~l~~n~---i~~~~~~~l~~~~~ 275 (319)
T cd00116 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA------SALLSPNISLLTLSLSCND---ITDDGAKDLAEVLA 275 (319)
T ss_pred cChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH------HHHhccCCCceEEEccCCC---CCcHHHHHHHHHHh
Confidence 32111 12333344567888888876655554444331 0001124788888887765 4432222 235
Q ss_pred CCCCCCEEEEeeeCCCCCCCCCCccccchhhhhcc----C-CCccceeee
Q 039096 376 ECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTR----Y-PRLSKLVLD 420 (554)
Q Consensus 376 ~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~----~-~~L~~L~l~ 420 (554)
.+++|+.++++ ++ .++ +.+...+++ . +.|+++++.
T Consensus 276 ~~~~L~~l~l~---~N----~l~---~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 276 EKESLLELDLR---GN----KFG---EEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred cCCCccEEECC---CC----CCc---HHHHHHHHHHHhhcCCchhhcccC
Confidence 55778888886 33 455 444333332 3 567777765
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.47 E-value=2e-13 Score=157.44 Aligned_cols=125 Identities=20% Similarity=0.222 Sum_probs=76.1
Q ss_pred cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCC
Q 039096 237 WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRD 316 (554)
Q Consensus 237 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~ 316 (554)
+|+.|++++|..+... ...+ .++++|+.|++++|..++.. .... .+ ++|+.|++++|..+... ....+
T Consensus 779 sL~~L~Ls~n~~l~~l-P~si-~~L~~L~~L~Ls~C~~L~~L--P~~~-~L-~sL~~L~Ls~c~~L~~~------p~~~~ 846 (1153)
T PLN03210 779 SLTRLFLSDIPSLVEL-PSSI-QNLHKLEHLEIENCINLETL--PTGI-NL-ESLESLDLSGCSRLRTF------PDIST 846 (1153)
T ss_pred cchheeCCCCCCcccc-Chhh-hCCCCCCEEECCCCCCcCee--CCCC-Cc-cccCEEECCCCCccccc------ccccc
Confidence 5777777777533221 2223 34778888888887654421 1111 23 67888888888766321 11235
Q ss_pred CccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCC
Q 039096 317 RIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDT 391 (554)
Q Consensus 317 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c 391 (554)
+|++|+++.+.+.. .+..+ ..+++|+.|++.+|.. ++.++.. +..+++|+.+++. +|
T Consensus 847 nL~~L~Ls~n~i~~-iP~si-----------~~l~~L~~L~L~~C~~--L~~l~~~-~~~L~~L~~L~l~---~C 903 (1153)
T PLN03210 847 NISDLNLSRTGIEE-VPWWI-----------EKFSNLSFLDMNGCNN--LQRVSLN-ISKLKHLETVDFS---DC 903 (1153)
T ss_pred ccCEeECCCCCCcc-ChHHH-----------hcCCCCCEEECCCCCC--cCccCcc-cccccCCCeeecC---CC
Confidence 68888886665432 23334 6788888888888876 6665443 5667778888887 77
No 11
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.2e-13 Score=125.41 Aligned_cols=193 Identities=17% Similarity=0.187 Sum_probs=140.0
Q ss_pred CCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhc
Q 039096 181 ARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRG 260 (554)
Q Consensus 181 ~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 260 (554)
..|+...+..+...|..|+.|.+.+ ..+.|.. ...++. -. +|+.|+++.|..++..++.-+..+
T Consensus 195 s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I--~~~iAk-N~------------~L~~lnlsm~sG~t~n~~~ll~~s 258 (419)
T KOG2120|consen 195 SVITVSTLHGILSQCSKLKNLSLEG-LRLDDPI--VNTIAK-NS------------NLVRLNLSMCSGFTENALQLLLSS 258 (419)
T ss_pred hheeHHHHHHHHHHHHhhhhccccc-cccCcHH--HHHHhc-cc------------cceeeccccccccchhHHHHHHHh
Confidence 3455555555555666666666655 3354443 224422 22 666788888888999999999999
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEe-eeeeccccchhhhccC
Q 039096 261 CSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHI-DCVWDGIRSSEAKATG 339 (554)
Q Consensus 261 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l-~~~~~~~~~~~~~~~~ 339 (554)
|..|.+|+|+.|...++. +..+.....++|+.|++++|...-....+..+...||+|.+||+ +++.+....+..+
T Consensus 259 cs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~--- 334 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF--- 334 (419)
T ss_pred hhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH---
Confidence 999999999999976665 66555555589999999999766556678888899999999999 5666666566666
Q ss_pred CccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhcc-CCCc
Q 039096 340 NTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTR-YPRL 414 (554)
Q Consensus 340 ~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~-~~~L 414 (554)
..++.|++|.++.|.+ +.+-..-.+...|+|..|++. +| ++ |..+..+.+ +++|
T Consensus 335 --------~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~---g~-----vs---dt~mel~~e~~~~l 389 (419)
T KOG2120|consen 335 --------FKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVF---GC-----VS---DTTMELLKEMLSHL 389 (419)
T ss_pred --------HhcchheeeehhhhcC--CChHHeeeeccCcceEEEEec---cc-----cC---chHHHHHHHhCccc
Confidence 7899999999999986 545444556888999999998 44 44 555554444 5544
No 12
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=5.4e-13 Score=122.83 Aligned_cols=202 Identities=19% Similarity=0.263 Sum_probs=134.1
Q ss_pred ccceeecccccccCcccHHHHHhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHH
Q 039096 54 RLLADLLQMSFLCFGAEFVPLLKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEII 133 (554)
Q Consensus 54 ~L~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~ 133 (554)
.|++++++++ .++...+..+++.|.+|+.|.+.|. ...+.+...+++. .+|+.|+++.+ .|++..+++.+
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN----~~L~~lnlsm~---sG~t~n~~~ll- 255 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKN----SNLVRLNLSMC---SGFTENALQLL- 255 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhcc----ccceeeccccc---cccchhHHHHH-
Confidence 4666666633 3345566777889999999999886 5677776667666 68999999955 45777777555
Q ss_pred HhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHH-hCCCCCcEEEecCCCC-CCC
Q 039096 134 AARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLF-SGLPLLEELALDVGKN-VRD 211 (554)
Q Consensus 134 ~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~-~~~~~L~~L~L~~c~~-l~~ 211 (554)
.++|+.|.+|++++| .-.++. +..+. .--++|+.|+|+||.. +.+
T Consensus 256 -------------~~scs~L~~LNlsWc-------------------~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~ 302 (419)
T KOG2120|consen 256 -------------LSSCSRLDELNLSWC-------------------FLFTEK-VTVAVAHISETLTQLNLSGYRRNLQK 302 (419)
T ss_pred -------------HHhhhhHhhcCchHh-------------------hccchh-hhHHHhhhchhhhhhhhhhhHhhhhh
Confidence 346677888888877 222222 22222 2237888899988864 333
Q ss_pred chhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCc
Q 039096 212 SGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETL 291 (554)
Q Consensus 212 ~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L 291 (554)
.. +..+++.||+|.. ||+++|..+++..+..+.+ ++.|++|.++.|..|..+-+..+... |+|
T Consensus 303 sh--~~tL~~rcp~l~~------------LDLSD~v~l~~~~~~~~~k-f~~L~~lSlsRCY~i~p~~~~~l~s~--psl 365 (419)
T KOG2120|consen 303 SH--LSTLVRRCPNLVH------------LDLSDSVMLKNDCFQEFFK-FNYLQHLSLSRCYDIIPETLLELNSK--PSL 365 (419)
T ss_pred hH--HHHHHHhCCceee------------eccccccccCchHHHHHHh-cchheeeehhhhcCCChHHeeeeccC--cce
Confidence 33 5577788888774 5555565567755666665 88899999999988776665555444 888
Q ss_pred cEEEEeccCCCChhHHHHHHhhcCCCc
Q 039096 292 VVIKIYCCENLGAVASCKALKPIRDRI 318 (554)
Q Consensus 292 ~~L~l~~c~~~~~~~~l~~l~~~~~~L 318 (554)
.+|++.+|-.-+ .+..+...|++|
T Consensus 366 ~yLdv~g~vsdt---~mel~~e~~~~l 389 (419)
T KOG2120|consen 366 VYLDVFGCVSDT---TMELLKEMLSHL 389 (419)
T ss_pred EEEEeccccCch---HHHHHHHhCccc
Confidence 999988885332 333333444444
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.36 E-value=2.1e-12 Score=149.03 Aligned_cols=42 Identities=19% Similarity=0.108 Sum_probs=21.8
Q ss_pred HhcCCCCcEEEecCCC-----CCCCChhHHHhhcCcCCCCccEEEcCCCC
Q 039096 75 LKHCKCLTSVDLSSFY-----HWTEDLPPVLKAYPDKSAILTCLNLLKTS 119 (554)
Q Consensus 75 ~~~~~~L~~L~L~~~~-----~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 119 (554)
+..+++|+.|.+.... .....+|..+..+| .+|+.|.+.++.
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp---~~Lr~L~~~~~~ 600 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP---PKLRLLRWDKYP 600 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcC---cccEEEEecCCC
Confidence 5566777777664321 11123344444555 566666666543
No 14
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.28 E-value=1.5e-11 Score=130.19 Aligned_cols=124 Identities=22% Similarity=0.266 Sum_probs=87.9
Q ss_pred cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCC
Q 039096 237 WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRD 316 (554)
Q Consensus 237 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~ 316 (554)
+|+.|+++++..++|.++..++..|++|+.|.+.+|..+++.|+..+...+ ++|++|++++|..+ ++..+..+...|+
T Consensus 244 ~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~-~~L~~L~l~~c~~~-~d~~l~~~~~~c~ 321 (482)
T KOG1947|consen 244 KLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERC-PSLRELDLSGCHGL-TDSGLEALLKNCP 321 (482)
T ss_pred CcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhc-CcccEEeeecCccc-hHHHHHHHHHhCc
Confidence 556777778877899999999988999999998889888999999999988 88999999999888 5666777777899
Q ss_pred CccEEEeee----eeccccchhhhccCC--ccchhhhhcCCCCceEEeeccc
Q 039096 317 RIQKLHIDC----VWDGIRSSEAKATGN--TSTIFSKTRWKSLKELSFWIEV 362 (554)
Q Consensus 317 ~L~~L~l~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~~L~l~~c~ 362 (554)
+|+.|.+.. ..+............ .........+++++.+.+..|.
T Consensus 322 ~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 322 NLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred chhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 888877621 122222222221100 0111334567777777776554
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.24 E-value=2e-13 Score=137.03 Aligned_cols=322 Identities=17% Similarity=0.132 Sum_probs=173.4
Q ss_pred cCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHH---HhcCCCCcEEEecCCCCCCCChhHH
Q 039096 23 CFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPL---LKHCKCLTSVDLSSFYHWTEDLPPV 99 (554)
Q Consensus 23 ~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~~~~~~~~~~ 99 (554)
.+++++.|.|..+. + ...+ +.++ .+.+|++|.+. .+.+..+ +..++.|+.+.+..+.--...+|..
T Consensus 30 qMt~~~WLkLnrt~-L-~~vP--eEL~-~lqkLEHLs~~------HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d 98 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTK-L-EQVP--EELS-RLQKLEHLSMA------HNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD 98 (1255)
T ss_pred HhhheeEEEechhh-h-hhCh--HHHH-HHhhhhhhhhh------hhhhHhhhhhhccchhhHHHhhhccccccCCCCch
Confidence 45677777776551 1 0111 2233 67777777777 4444444 5567788888887775555566666
Q ss_pred HhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhC-------CChHhhHHHHhccCCCCCEEEecccccccccCCCCC
Q 039096 100 LKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAAR-------PNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPD 172 (554)
Q Consensus 100 l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~-------~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 172 (554)
+-.+ ..|+.|+|++|...+ +. .++... ++. .+++.+...+.-++..|-.|+++++
T Consensus 99 iF~l----~dLt~lDLShNqL~E-vP-~~LE~A-Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N----------- 160 (1255)
T KOG0444|consen 99 IFRL----KDLTILDLSHNQLRE-VP-TNLEYA-KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN----------- 160 (1255)
T ss_pred hccc----ccceeeecchhhhhh-cc-hhhhhh-cCcEEEEcccCccccCCchHHHhhHhHhhhccccc-----------
Confidence 6555 578888888775210 00 000000 000 0111111222223344444444332
Q ss_pred CCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccC-------------ccc
Q 039096 173 DDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHS-------------WLE 239 (554)
Q Consensus 173 ~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~-------------~L~ 239 (554)
.+ +.++.-...+.+|+.|+|++.+ +.... +..+ ..+..|++|.+++.+. +|.
T Consensus 161 ---------rL--e~LPPQ~RRL~~LqtL~Ls~NP-L~hfQ--LrQL-PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 161 ---------RL--EMLPPQIRRLSMLQTLKLSNNP-LNHFQ--LRQL-PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLR 225 (1255)
T ss_pred ---------hh--hhcCHHHHHHhhhhhhhcCCCh-hhHHH--HhcC-ccchhhhhhhcccccchhhcCCCchhhhhhhh
Confidence 11 1112222356688888887754 31111 2223 3344455555655432 777
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCcc
Q 039096 240 SLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQ 319 (554)
Q Consensus 240 ~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~ 319 (554)
.++++.|. +.-. ..-.-.+++|+.|+|++|. |++..+.. ... .+|+.|+++.+... .++......+.|+
T Consensus 226 dvDlS~N~-Lp~v--Pecly~l~~LrrLNLS~N~-iteL~~~~--~~W-~~lEtLNlSrNQLt----~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 226 DVDLSENN-LPIV--PECLYKLRNLRRLNLSGNK-ITELNMTE--GEW-ENLETLNLSRNQLT----VLPDAVCKLTKLT 294 (1255)
T ss_pred hccccccC-CCcc--hHHHhhhhhhheeccCcCc-eeeeeccH--HHH-hhhhhhccccchhc----cchHHHhhhHHHH
Confidence 88888775 3321 2222336889999999887 66432211 112 67888888886543 3333334456788
Q ss_pred EEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCc
Q 039096 320 KLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRD 399 (554)
Q Consensus 320 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~ 399 (554)
+|.+..+.++-++..+- ++.+.+|+.+...++. + .+.++++..|+.|+.|.+ +| +.+-.
T Consensus 295 kLy~n~NkL~FeGiPSG----------IGKL~~Levf~aanN~---L-ElVPEglcRC~kL~kL~L----~~---NrLiT 353 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSG----------IGKLIQLEVFHAANNK---L-ELVPEGLCRCVKLQKLKL----DH---NRLIT 353 (1255)
T ss_pred HHHhccCcccccCCccc----------hhhhhhhHHHHhhccc---c-ccCchhhhhhHHHHHhcc----cc---cceee
Confidence 88887776555554432 2677777777765443 2 455677888888888888 44 33220
Q ss_pred cccchhhhhccCCCccceeee-cCCc
Q 039096 400 DKAWGLSCLTRYPRLSKLVLD-FGDT 424 (554)
Q Consensus 400 ~~~~~l~~l~~~~~L~~L~l~-c~~~ 424 (554)
.. ..+--++.|+.|++. ..++
T Consensus 354 LP----eaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 354 LP----EAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ch----hhhhhcCCcceeeccCCcCc
Confidence 10 123336778888887 4443
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.24 E-value=7.7e-13 Score=138.82 Aligned_cols=82 Identities=18% Similarity=0.143 Sum_probs=58.1
Q ss_pred hcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHH---HHhcCCCCcEEEecCCCCCCCChhH
Q 039096 22 LCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVP---LLKHCKCLTSVDLSSFYHWTEDLPP 98 (554)
Q Consensus 22 ~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~---~~~~~~~L~~L~L~~~~~~~~~~~~ 98 (554)
.+++ |+.||++++. + ..++ ..+. .+.+|+.++++.. .+.. .+.++++|++++|.++ .....|.
T Consensus 43 ~~v~-L~~l~lsnn~-~-~~fp--~~it-~l~~L~~ln~s~n------~i~~vp~s~~~~~~l~~lnL~~n--~l~~lP~ 108 (1081)
T KOG0618|consen 43 KRVK-LKSLDLSNNQ-I-SSFP--IQIT-LLSHLRQLNLSRN------YIRSVPSSCSNMRNLQYLNLKNN--RLQSLPA 108 (1081)
T ss_pred heee-eEEeeccccc-c-ccCC--chhh-hHHHHhhcccchh------hHhhCchhhhhhhcchhheeccc--hhhcCch
Confidence 3555 9999999883 2 2222 3344 7888999988833 3332 2567899999999865 3456677
Q ss_pred HHhhcCcCCCCccEEEcCCCCCC
Q 039096 99 VLKAYPDKSAILTCLNLLKTSFS 121 (554)
Q Consensus 99 ~l~~l~~~~~~L~~L~L~~~~~~ 121 (554)
.+..+ ++|++|++++|.+.
T Consensus 109 ~~~~l----knl~~LdlS~N~f~ 127 (1081)
T KOG0618|consen 109 SISEL----KNLQYLDLSFNHFG 127 (1081)
T ss_pred hHHhh----hcccccccchhccC
Confidence 77777 69999999998753
No 17
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.22 E-value=2.8e-11 Score=128.09 Aligned_cols=40 Identities=33% Similarity=0.350 Sum_probs=20.2
Q ss_pred HhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCC
Q 039096 75 LKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLK 117 (554)
Q Consensus 75 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 117 (554)
...+++|+.|.+.+|..+.+.. +..+...+++|+.|+++.
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSG 223 (482)
T ss_pred HhhCchhhHhhhcccccCChhh---HHHHHhhCchhheecccC
Confidence 4446666666666664444321 222222345666666664
No 18
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.20 E-value=7.1e-11 Score=111.58 Aligned_cols=266 Identities=21% Similarity=0.205 Sum_probs=137.9
Q ss_pred chhhcCCCCcEEeccCCcccccccc--cCCCccCCCcccceeeccccc-ccCccc-------HHHHHhcCCCCcEEEecC
Q 039096 19 IVPLCFDAVTNLQLSNISPWGHSLL--FSPSSSSMDPRLLADLLQMSF-LCFGAE-------FVPLLKHCKCLTSVDLSS 88 (554)
Q Consensus 19 ~l~~~~~~L~~L~Ls~~~~~~~~~~--~~~~~~~~~~~L~~l~l~~~~-~~~~~~-------l~~~~~~~~~L~~L~L~~ 88 (554)
..-..+..++.++||++ .++.+-- ..+.+. +.++|+..+++..| +-.... +...+..|++|++||||+
T Consensus 24 ~~~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~-~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGN-TFGTEAARAIAKVLA-SKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHhcccCceEEEeccCC-chhHHHHHHHHHHHh-hcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 33446788999999988 3432111 012222 45566666666444 111111 112244567777777777
Q ss_pred CCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhH-HHHhccCCCCCEEEeccccccccc
Q 039096 89 FYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWA-VSIATNCPRLTLLHLAETSTLAAM 167 (554)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~-~~~~~~~~~L~~L~l~~c~~l~~~ 167 (554)
|- +....+..+..+.+.|..|++|.|.+|. ++..+=..+.+.+ ..|. ......-++|+.+...++-
T Consensus 102 NA-~G~~g~~~l~~ll~s~~~L~eL~L~N~G----lg~~ag~~l~~al---~~l~~~kk~~~~~~Lrv~i~~rNr----- 168 (382)
T KOG1909|consen 102 NA-FGPKGIRGLEELLSSCTDLEELYLNNCG----LGPEAGGRLGRAL---FELAVNKKAASKPKLRVFICGRNR----- 168 (382)
T ss_pred cc-cCccchHHHHHHHHhccCHHHHhhhcCC----CChhHHHHHHHHH---HHHHHHhccCCCcceEEEEeeccc-----
Confidence 63 2333333455555566777777777764 4333333332211 2221 2222356788888886530
Q ss_pred CCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchh-hH-HHHHhcCCCCcEeecccccCcccEEEecC
Q 039096 168 RGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGS-AS-EALKSKCVNLKGLKLGQLHSWLESLSIKN 245 (554)
Q Consensus 168 ~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~-~l-~~l~~~~~~L~~L~l~~~~~~L~~L~l~~ 245 (554)
...-....+...++.++.|+.+.+.. +.|...+. ++ ..+ ..|++|++|+| .+
T Consensus 169 ------------len~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal-~~~~~LevLdl------------~D 222 (382)
T KOG1909|consen 169 ------------LENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEAL-EHCPHLEVLDL------------RD 222 (382)
T ss_pred ------------cccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHH-HhCCcceeeec------------cc
Confidence 01122344556667778999999977 45766664 22 233 67888775554 44
Q ss_pred CCCCCHHHHHHHH---hcCCCCcEEEecCCCCCCHHHHHHHHHHhc---CCccEEEEeccCCCChhHH--HHHHhhcCCC
Q 039096 246 CGDLSDMSLVAIG---RGCSKLVKFEVEGCKNITVDGLRTLASLLR---ETLVVIKIYCCENLGAVAS--CKALKPIRDR 317 (554)
Q Consensus 246 ~~~l~~~~l~~l~---~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~---~~L~~L~l~~c~~~~~~~~--l~~l~~~~~~ 317 (554)
|. ++..+-.+++ ..+++|++|++.+|. +.+.|...+...+. |+|+.|.+.+|... .... +......-|.
T Consensus 223 Nt-ft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt-~da~~~la~~~~ek~d 299 (382)
T KOG1909|consen 223 NT-FTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEIT-RDAALALAACMAEKPD 299 (382)
T ss_pred ch-hhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhH-HHHHHHHHHHHhcchh
Confidence 44 3433332222 234566666666666 55555555443321 56666666665422 2211 1111112355
Q ss_pred ccEEEeeeeec
Q 039096 318 IQKLHIDCVWD 328 (554)
Q Consensus 318 L~~L~l~~~~~ 328 (554)
|++|+|+.|..
T Consensus 300 L~kLnLngN~l 310 (382)
T KOG1909|consen 300 LEKLNLNGNRL 310 (382)
T ss_pred hHHhcCCcccc
Confidence 66666665554
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=1.2e-10 Score=110.06 Aligned_cols=286 Identities=19% Similarity=0.130 Sum_probs=154.0
Q ss_pred HHHHhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCC
Q 039096 72 VPLLKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCP 151 (554)
Q Consensus 72 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~ 151 (554)
...+.....+++++|+|++. .......+.......++|+..++++-. +......+ .+.|+.|..++. .|+
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~-G~EAa~~i~~~L~~~~~L~~v~~sd~f-----tGR~~~Ei---~e~L~~l~~aL~-~~~ 92 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTF-GTEAARAIAKVLASKKELREVNLSDMF-----TGRLKDEI---PEALKMLSKALL-GCP 92 (382)
T ss_pred HHHhcccCceEEEeccCCch-hHHHHHHHHHHHhhcccceeeehHhhh-----cCCcHHHH---HHHHHHHHHHHh-cCC
Confidence 34456678888999988743 333333344433334578888877532 11111111 123444445555 578
Q ss_pred CCCEEEecccccccccCCCCCCCCCccccCCCC---HHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcE
Q 039096 152 RLTLLHLAETSTLAAMRGDPDDDGFTAEDARIS---EEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKG 228 (554)
Q Consensus 152 ~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~---~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~ 228 (554)
+|++|+|+++ .+. ..++..+...|..|++|.+.+|. ++..+ =..+++.+..|..
T Consensus 93 ~L~~ldLSDN--------------------A~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~a--g~~l~~al~~l~~ 149 (382)
T KOG1909|consen 93 KLQKLDLSDN--------------------AFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEA--GGRLGRALFELAV 149 (382)
T ss_pred ceeEeecccc--------------------ccCccchHHHHHHHHhccCHHHHhhhcCC-CChhH--HHHHHHHHHHHHH
Confidence 8999999874 222 24556666778889999998765 54433 2234333333332
Q ss_pred eecccccCcccEEEecCCCCCCHHH---HHHHHhcCCCCcEEEecCCCCCCHHHHHHHHH---HhcCCccEEEEeccCCC
Q 039096 229 LKLGQLHSWLESLSIKNCGDLSDMS---LVAIGRGCSKLVKFEVEGCKNITVDGLRTLAS---LLRETLVVIKIYCCENL 302 (554)
Q Consensus 229 L~l~~~~~~L~~L~l~~~~~l~~~~---l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~---~~~~~L~~L~l~~c~~~ 302 (554)
.+.......|+++....|. +.+.+ +....+.++.|+.+.+..|. |...|+..+.. .+ ++|+.|+|.++...
T Consensus 150 ~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~-~~LevLdl~DNtft 226 (382)
T KOG1909|consen 150 NKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHC-PHLEVLDLRDNTFT 226 (382)
T ss_pred HhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhC-Ccceeeecccchhh
Confidence 2222333366667666665 34333 33334445777777777766 56555543332 33 67777777665422
Q ss_pred C-hhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCcccc----ccCcCC
Q 039096 303 G-AVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPV----AGLDEC 377 (554)
Q Consensus 303 ~-~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~----~~l~~~ 377 (554)
. ....+......+++|++|.++.+.+...+...+. +.+....|+|+.|.+.+|. ++.-.. ..+..-
T Consensus 227 ~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~------~al~~~~p~L~vl~l~gNe---It~da~~~la~~~~ek 297 (382)
T KOG1909|consen 227 LEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV------DALKESAPSLEVLELAGNE---ITRDAALALAACMAEK 297 (382)
T ss_pred hHHHHHHHHHhcccchheeecccccccccccHHHHH------HHHhccCCCCceeccCcch---hHHHHHHHHHHHHhcc
Confidence 1 1122333334456677777755544444444331 1233456778888776555 332111 122446
Q ss_pred CCCCEEEEeeeCCCCCCCCCCccccchhhhhcc
Q 039096 378 PILENIRIKMEGDTREKPLLRDDKAWGLSCLTR 410 (554)
Q Consensus 378 ~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~ 410 (554)
|.|+.|++. .|+.+ .++.++..+..
T Consensus 298 ~dL~kLnLn---gN~l~-----e~de~i~ei~~ 322 (382)
T KOG1909|consen 298 PDLEKLNLN---GNRLG-----EKDEGIDEIAS 322 (382)
T ss_pred hhhHHhcCC---ccccc-----ccchhHHHHHH
Confidence 788888887 56332 22555555443
No 20
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.84 E-value=2.8e-11 Score=116.03 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=36.3
Q ss_pred HHhccccceeeeccchhhHHHHhhhcCCCCCcccccccccccCCCCC
Q 039096 480 ISNCITLRKVFVHCTAREHFMSMLISPTPNPKKARDAQIKLDYYPPP 526 (554)
Q Consensus 480 l~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 526 (554)
++++..|..|++.+......+..... |.+ |++|+++|+.|.-|
T Consensus 501 l~nm~nL~tLDL~nNdlq~IPp~Lgn-mtn---L~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDLQQIPPILGN-MTN---LRHLELDGNPFRQP 543 (565)
T ss_pred hhhhhhcceeccCCCchhhCChhhcc-ccc---eeEEEecCCccCCC
Confidence 88899999999998888887777666 889 99999999887654
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.81 E-value=3.3e-09 Score=114.75 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=14.6
Q ss_pred CCceEEeecccCCccCccccccCcCCCCCCEEEEe
Q 039096 352 SLKELSFWIEVGELLTPLPVAGLDECPILENIRIK 386 (554)
Q Consensus 352 ~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~ 386 (554)
+|+.|+++++. ++.++. .+..+++|+.|+++
T Consensus 423 ~L~~L~Ls~Nq---Lt~LP~-sl~~L~~L~~LdLs 453 (788)
T PRK15387 423 GLLSLSVYRNQ---LTRLPE-SLIHLSSETTVNLE 453 (788)
T ss_pred hhhhhhhccCc---ccccCh-HHhhccCCCeEECC
Confidence 44555554333 443332 24455555555554
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.78 E-value=4.9e-10 Score=118.20 Aligned_cols=123 Identities=16% Similarity=0.126 Sum_probs=72.6
Q ss_pred cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCC--CCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhc
Q 039096 237 WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCK--NITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPI 314 (554)
Q Consensus 237 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~--~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~ 314 (554)
.|+.|++.+|. ++|..+..+.. +++||.|++++|. .+.+..+..+ +.|++|+++++... .++.-...
T Consensus 360 ~Lq~LylanN~-Ltd~c~p~l~~-~~hLKVLhLsyNrL~~fpas~~~kl-----e~LeeL~LSGNkL~----~Lp~tva~ 428 (1081)
T KOG0618|consen 360 ALQELYLANNH-LTDSCFPVLVN-FKHLKVLHLSYNRLNSFPASKLRKL-----EELEELNLSGNKLT----TLPDTVAN 428 (1081)
T ss_pred HHHHHHHhcCc-ccccchhhhcc-ccceeeeeecccccccCCHHHHhch-----HHhHHHhcccchhh----hhhHHHHh
Confidence 77888888887 78777666654 8888888888884 2444444333 67888888886533 12222234
Q ss_pred CCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEe
Q 039096 315 RDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIK 386 (554)
Q Consensus 315 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~ 386 (554)
|+.|+.|....+.+. .+..+ ..++.|+.+|++.+. ++........--|+|+.|+++
T Consensus 429 ~~~L~tL~ahsN~l~--~fPe~-----------~~l~qL~~lDlS~N~---L~~~~l~~~~p~p~LkyLdlS 484 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLL--SFPEL-----------AQLPQLKVLDLSCNN---LSEVTLPEALPSPNLKYLDLS 484 (1081)
T ss_pred hhhhHHHhhcCCcee--echhh-----------hhcCcceEEecccch---hhhhhhhhhCCCcccceeecc
Confidence 666777766444322 22233 466777777776333 333322222222677777775
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=9.2e-09 Score=100.17 Aligned_cols=102 Identities=21% Similarity=0.233 Sum_probs=64.1
Q ss_pred cCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcE
Q 039096 149 NCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKG 228 (554)
Q Consensus 149 ~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~ 228 (554)
++++|++..+.+| .+...+.......|++++.|||++ +-+....+ +..+++.+|+|+.
T Consensus 119 n~kkL~~IsLdn~--------------------~V~~~~~~~~~k~~~~v~~LdLS~-NL~~nw~~-v~~i~eqLp~Le~ 176 (505)
T KOG3207|consen 119 NLKKLREISLDNY--------------------RVEDAGIEEYSKILPNVRDLDLSR-NLFHNWFP-VLKIAEQLPSLEN 176 (505)
T ss_pred hHHhhhheeecCc--------------------cccccchhhhhhhCCcceeecchh-hhHHhHHH-HHHHHHhcccchh
Confidence 5678888888764 233333335567899999999987 43433222 4567799999999
Q ss_pred eecccccC-------------cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCC
Q 039096 229 LKLGQLHS-------------WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCK 273 (554)
Q Consensus 229 L~l~~~~~-------------~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~ 273 (554)
|+++...- .|+.|.++.|+ ++......+...||+|+.|++.+|.
T Consensus 177 LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 177 LNLSSNRLSNFISSNTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred cccccccccCCccccchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhccc
Confidence 98876421 45555555555 4555555555555555555555553
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.5e-09 Score=104.07 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=60.0
Q ss_pred hcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCE
Q 039096 76 KHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTL 155 (554)
Q Consensus 76 ~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~ 155 (554)
+++++|+++.|.++..-......... .|++++.|+|+.|-+. .-..+ ..+++.+|+|+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k----~~~~v~~LdLS~NL~~---nw~~v--------------~~i~eqLp~Le~ 176 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSK----ILPNVRDLDLSRNLFH---NWFPV--------------LKIAEQLPSLEN 176 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhh----hCCcceeecchhhhHH---hHHHH--------------HHHHHhcccchh
Confidence 34667777777655221111111222 3457788888766310 01112 344556777777
Q ss_pred EEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccc
Q 039096 156 LHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQL 234 (554)
Q Consensus 156 L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~ 234 (554)
|+++.+.-. .. .+.... ..+++|+.|.|+.|. ++-.. +..+...+|+|+.|.+...
T Consensus 177 LNls~Nrl~----------------~~-~~s~~~---~~l~~lK~L~l~~CG-ls~k~--V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 177 LNLSSNRLS----------------NF-ISSNTT---LLLSHLKQLVLNSCG-LSWKD--VQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred ccccccccc----------------CC-ccccch---hhhhhhheEEeccCC-CCHHH--HHHHHHhCCcHHHhhhhcc
Confidence 877654100 00 011111 145788888888876 65333 4455577888776666544
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.66 E-value=2.2e-08 Score=108.43 Aligned_cols=258 Identities=19% Similarity=0.147 Sum_probs=125.4
Q ss_pred EEEEecCCCchhchhhcC-CCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCCcEEE
Q 039096 7 SITLRGNACNLNIVPLCF-DAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCLTSVD 85 (554)
Q Consensus 7 ~L~l~~~~~~l~~l~~~~-~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~ 85 (554)
.|+++++ .+..+|..+ ++|+.|+++++ .+.. + |. ..++|+.|+++++ .+..+-...++|++|+
T Consensus 205 ~LdLs~~--~LtsLP~~l~~~L~~L~L~~N-~Lt~--L--P~---lp~~Lk~LdLs~N------~LtsLP~lp~sL~~L~ 268 (788)
T PRK15387 205 VLNVGES--GLTTLPDCLPAHITTLVIPDN-NLTS--L--PA---LPPELRTLEVSGN------QLTSLPVLPPGLLELS 268 (788)
T ss_pred EEEcCCC--CCCcCCcchhcCCCEEEccCC-cCCC--C--CC---CCCCCcEEEecCC------ccCcccCcccccceee
Confidence 4666655 345677653 57888888877 3322 1 21 3467888888732 2222222346788888
Q ss_pred ecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEeccccccc
Q 039096 86 LSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLA 165 (554)
Q Consensus 86 L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~ 165 (554)
+++|. +. .+| .+| .+|+.|++++|.. + ..|. ..++|+.|++++|. ++
T Consensus 269 Ls~N~-L~-~Lp----~lp---~~L~~L~Ls~N~L----t---------~LP~----------~p~~L~~LdLS~N~-L~ 315 (788)
T PRK15387 269 IFSNP-LT-HLP----ALP---SGLCKLWIFGNQL----T---------SLPV----------LPPGLQELSVSDNQ-LA 315 (788)
T ss_pred ccCCc-hh-hhh----hch---hhcCEEECcCCcc----c---------cccc----------cccccceeECCCCc-cc
Confidence 87762 22 122 233 5677888877651 1 0111 23567777776541 11
Q ss_pred ccCCCCC-CCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEec
Q 039096 166 AMRGDPD-DDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIK 244 (554)
Q Consensus 166 ~~~~~~~-~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~ 244 (554)
.+...+. ...+....+.++. +.....+|+.|++++ ++++... . ..+ +|+.|+++
T Consensus 316 ~Lp~lp~~L~~L~Ls~N~L~~-----LP~lp~~Lq~LdLS~-N~Ls~LP----~---lp~------------~L~~L~Ls 370 (788)
T PRK15387 316 SLPALPSELCKLWAYNNQLTS-----LPTLPSGLQELSVSD-NQLASLP----T---LPS------------ELYKLWAY 370 (788)
T ss_pred cCCCCcccccccccccCcccc-----ccccccccceEecCC-CccCCCC----C---CCc------------ccceehhh
Confidence 1100000 0000000011110 100112455555554 2343211 0 112 44456666
Q ss_pred CCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEee
Q 039096 245 NCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHID 324 (554)
Q Consensus 245 ~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~ 324 (554)
+|. ++. +. ....+|+.|++++|. ++. +.. .. ++|+.|+++++... .. +. ...+|+.|++.
T Consensus 371 ~N~-L~~--LP---~l~~~L~~LdLs~N~-Lt~--LP~---l~-s~L~~LdLS~N~Ls-sI---P~---l~~~L~~L~Ls 430 (788)
T PRK15387 371 NNR-LTS--LP---ALPSGLKELIVSGNR-LTS--LPV---LP-SELKELMVSGNRLT-SL---PM---LPSGLLSLSVY 430 (788)
T ss_pred ccc-ccc--Cc---ccccccceEEecCCc-ccC--CCC---cc-cCCCEEEccCCcCC-CC---Cc---chhhhhhhhhc
Confidence 554 332 11 123567888888776 442 111 11 57888888776532 21 11 12357777776
Q ss_pred eeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCcccccc
Q 039096 325 CVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAG 373 (554)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~ 373 (554)
.+.+.. .+..+ ..+++|+.|++++++ +++.....
T Consensus 431 ~NqLt~-LP~sl-----------~~L~~L~~LdLs~N~---Ls~~~~~~ 464 (788)
T PRK15387 431 RNQLTR-LPESL-----------IHLSSETTVNLEGNP---LSERTLQA 464 (788)
T ss_pred cCcccc-cChHH-----------hhccCCCeEECCCCC---CCchHHHH
Confidence 665442 23334 567788888887665 55544443
No 26
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.61 E-value=3.9e-09 Score=101.54 Aligned_cols=115 Identities=24% Similarity=0.246 Sum_probs=63.1
Q ss_pred CCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhH----------HHHh
Q 039096 78 CKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWA----------VSIA 147 (554)
Q Consensus 78 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~----------~~~~ 147 (554)
++.|++||... +..+.+|..++.+ .+|+.|++.+|... .+++ +.+|..|++++ +...
T Consensus 182 m~~L~~ld~~~--N~L~tlP~~lg~l----~~L~~LyL~~Nki~------~lPe-f~gcs~L~Elh~g~N~i~~lpae~~ 248 (565)
T KOG0472|consen 182 MKRLKHLDCNS--NLLETLPPELGGL----ESLELLYLRRNKIR------FLPE-FPGCSLLKELHVGENQIEMLPAEHL 248 (565)
T ss_pred HHHHHhcccch--hhhhcCChhhcch----hhhHHHHhhhcccc------cCCC-CCccHHHHHHHhcccHHHhhHHHHh
Confidence 56666666643 3344455555444 46666777666421 1111 13455566655 6666
Q ss_pred ccCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCc
Q 039096 148 TNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLK 227 (554)
Q Consensus 148 ~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~ 227 (554)
.++++|..|+++++ .++..... + ..+++|++||+++ +.++.-.. .+ .++ +|+
T Consensus 249 ~~L~~l~vLDLRdN--------------------klke~Pde-~-clLrsL~rLDlSN-N~is~Lp~---sL-gnl-hL~ 300 (565)
T KOG0472|consen 249 KHLNSLLVLDLRDN--------------------KLKEVPDE-I-CLLRSLERLDLSN-NDISSLPY---SL-GNL-HLK 300 (565)
T ss_pred cccccceeeecccc--------------------ccccCchH-H-HHhhhhhhhcccC-CccccCCc---cc-ccc-eee
Confidence 77889999999874 22221111 1 1356788888877 44654332 23 344 566
Q ss_pred Eeeccc
Q 039096 228 GLKLGQ 233 (554)
Q Consensus 228 ~L~l~~ 233 (554)
.|.+.|
T Consensus 301 ~L~leG 306 (565)
T KOG0472|consen 301 FLALEG 306 (565)
T ss_pred ehhhcC
Confidence 655544
No 27
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.32 E-value=2.8e-06 Score=78.17 Aligned_cols=217 Identities=18% Similarity=0.086 Sum_probs=107.8
Q ss_pred HhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCC
Q 039096 75 LKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLT 154 (554)
Q Consensus 75 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~ 154 (554)
+..+..++.++||||..-+ ....++......-.+|+..+++.-. +......+. .+|..|-.++. .||+|+
T Consensus 26 l~~~d~~~evdLSGNtigt-EA~e~l~~~ia~~~~L~vvnfsd~f-----tgr~kde~~---~~L~~Ll~aLl-kcp~l~ 95 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGT-EAMEELCNVIANVRNLRVVNFSDAF-----TGRDKDELY---SNLVMLLKALL-KCPRLQ 95 (388)
T ss_pred HHhhcceeEEeccCCcccH-HHHHHHHHHHhhhcceeEeehhhhh-----hcccHHHHH---HHHHHHHHHHh-cCCcce
Confidence 4458899999999985433 3334455544445678888877542 111112221 23444445555 699999
Q ss_pred EEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccc
Q 039096 155 LLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQL 234 (554)
Q Consensus 155 ~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~ 234 (554)
..+++++-. ..-..+.+..+...-..|++|.+++|. ++..+- ..+++.+.+|-...=...
T Consensus 96 ~v~LSDNAf-----------------g~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG--~rigkal~~la~nKKaa~ 155 (388)
T COG5238 96 KVDLSDNAF-----------------GSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAG--GRIGKALFHLAYNKKAAD 155 (388)
T ss_pred eeecccccc-----------------CcccchHHHHHHhcCCCceeEEeecCC-CCccch--hHHHHHHHHHHHHhhhcc
Confidence 999987410 111234555556677899999997754 533211 122211111110000001
Q ss_pred cCcccEEEecCCCC--CCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHH----HhcCCccEEEEeccCCCCh-hHH
Q 039096 235 HSWLESLSIKNCGD--LSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLAS----LLRETLVVIKIYCCENLGA-VAS 307 (554)
Q Consensus 235 ~~~L~~L~l~~~~~--l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~----~~~~~L~~L~l~~c~~~~~-~~~ 307 (554)
...|+......|.. .+..-..+....-.+|+++.+..|. |..+|+..+.- .+ .+|+.|++.++..... ...
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg-Irpegv~~L~~~gl~y~-~~LevLDlqDNtft~~gS~~ 233 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG-IRPEGVTMLAFLGLFYS-HSLEVLDLQDNTFTLEGSRY 233 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC-cCcchhHHHHHHHHHHh-CcceeeeccccchhhhhHHH
Confidence 11344444444431 1122222333323567777777766 66666655431 22 5666666665432211 111
Q ss_pred HHHHhhcCCCccEEEe
Q 039096 308 CKALKPIRDRIQKLHI 323 (554)
Q Consensus 308 l~~l~~~~~~L~~L~l 323 (554)
+......++.|++|.+
T Consensus 234 La~al~~W~~lrEL~l 249 (388)
T COG5238 234 LADALCEWNLLRELRL 249 (388)
T ss_pred HHHHhcccchhhhccc
Confidence 2222233455566666
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.21 E-value=2.9e-06 Score=92.69 Aligned_cols=92 Identities=23% Similarity=0.366 Sum_probs=44.2
Q ss_pred eeEEEEecCCCchhchhhc-CCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHH-hcCCCCc
Q 039096 5 RTSITLRGNACNLNIVPLC-FDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLL-KHCKCLT 82 (554)
Q Consensus 5 r~~L~l~~~~~~l~~l~~~-~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~-~~~~~L~ 82 (554)
.+.|.+++. .+..+|.. .++|+.|+++++ .+. . + |.. ...+|+.|+++++ .+..+- .-.++|+
T Consensus 180 ~~~L~L~~~--~LtsLP~~Ip~~L~~L~Ls~N-~Lt-s-L--P~~--l~~nL~~L~Ls~N------~LtsLP~~l~~~L~ 244 (754)
T PRK15370 180 KTELRLKIL--GLTTIPACIPEQITTLILDNN-ELK-S-L--PEN--LQGNIKTLYANSN------QLTSIPATLPDTIQ 244 (754)
T ss_pred ceEEEeCCC--CcCcCCcccccCCcEEEecCC-CCC-c-C--Chh--hccCCCEEECCCC------ccccCChhhhcccc
Confidence 345666544 24455553 356777888776 332 1 1 111 1235666666622 111110 1123566
Q ss_pred EEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCC
Q 039096 83 SVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTS 119 (554)
Q Consensus 83 ~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 119 (554)
.|+|++|. +. .+|.. ++ ++|+.|++++|.
T Consensus 245 ~L~Ls~N~-L~-~LP~~---l~---s~L~~L~Ls~N~ 273 (754)
T PRK15370 245 EMELSINR-IT-ELPER---LP---SALQSLDLFHNK 273 (754)
T ss_pred EEECcCCc-cC-cCChh---Hh---CCCCEEECcCCc
Confidence 77776652 22 33332 22 356777776554
No 29
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.09 E-value=3.9e-06 Score=90.78 Aligned_cols=155 Identities=16% Similarity=0.064 Sum_probs=100.9
Q ss_pred cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCC
Q 039096 237 WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRD 316 (554)
Q Consensus 237 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~ 316 (554)
+|++|++++...+......+++..+|.|++|.+.+-. +....+..+...+ |+|..|+|++++-. ...++ ...+
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-~~~~dF~~lc~sF-pNL~sLDIS~TnI~-nl~GI----S~Lk 195 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-FDNDDFSQLCASF-PNLRSLDISGTNIS-NLSGI----SRLK 195 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCce-ecchhHHHHhhcc-CccceeecCCCCcc-CcHHH----hccc
Confidence 8888999888777777778888889999999998866 4444578888888 99999999997533 33222 2466
Q ss_pred CccEEEeeeeeccc-cchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccC---cCCCCCCEEEEeeeCCCC
Q 039096 317 RIQKLHIDCVWDGI-RSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGL---DECPILENIRIKMEGDTR 392 (554)
Q Consensus 317 ~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l---~~~~~L~~L~l~~~~~c~ 392 (554)
+|+.|.+.+..+.. .....+ .++++|+.||++.-..+..+.+....+ ..+|.|+.|+.+
T Consensus 196 nLq~L~mrnLe~e~~~~l~~L-----------F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS------ 258 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDL-----------FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS------ 258 (699)
T ss_pred cHHHHhccCCCCCchhhHHHH-----------hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC------
Confidence 78888876554322 333344 678999999998544311111111111 557888888775
Q ss_pred CCCCCCccccchhhhhcc-CCCccceee
Q 039096 393 EKPLLRDDKAWGLSCLTR-YPRLSKLVL 419 (554)
Q Consensus 393 ~~~~l~~~~~~~l~~l~~-~~~L~~L~l 419 (554)
+..+. ..-+..+.+ .|+|+.+..
T Consensus 259 -gTdi~---~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 259 -GTDIN---EEILEELLNSHPNLQQIAA 282 (699)
T ss_pred -Ccchh---HHHHHHHHHhCccHhhhhh
Confidence 12333 444555544 666665553
No 30
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=2e-05 Score=72.73 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=22.1
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHHHhc--CCccEEEEeccC
Q 039096 261 CSKLVKFEVEGCKNITVDGLRTLASLLR--ETLVVIKIYCCE 300 (554)
Q Consensus 261 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~--~~L~~L~l~~c~ 300 (554)
|.+|+.|+|+.|. ++-.|-..++..++ +.|++|.+.+|-
T Consensus 213 ~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 213 SHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred hCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccchh
Confidence 5666666666665 55555555544332 345666666663
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.08 E-value=6e-07 Score=79.73 Aligned_cols=13 Identities=15% Similarity=0.169 Sum_probs=4.2
Q ss_pred CCCCcEEEecCCC
Q 039096 261 CSKLVKFEVEGCK 273 (554)
Q Consensus 261 ~~~L~~L~L~~c~ 273 (554)
+|+|++|++++|.
T Consensus 87 lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 87 LPNLQELYLSNNK 99 (175)
T ss_dssp -TT--EEE-TTS-
T ss_pred CCcCCEEECcCCc
Confidence 4555555555444
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.07 E-value=2.1e-06 Score=82.96 Aligned_cols=38 Identities=29% Similarity=0.246 Sum_probs=24.1
Q ss_pred HhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCC
Q 039096 75 LKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLK 117 (554)
Q Consensus 75 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 117 (554)
++.+++|+.|||+.| .++...|..++.+ ++|..|-+.+
T Consensus 87 F~~l~~LRrLdLS~N-~Is~I~p~AF~GL----~~l~~Lvlyg 124 (498)
T KOG4237|consen 87 FKTLHRLRRLDLSKN-NISFIAPDAFKGL----ASLLSLVLYG 124 (498)
T ss_pred ccchhhhceeccccc-chhhcChHhhhhh----HhhhHHHhhc
Confidence 456777888888776 4555556666655 3666666655
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.93 E-value=2.9e-05 Score=69.07 Aligned_cols=129 Identities=19% Similarity=0.137 Sum_probs=42.4
Q ss_pred CCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHH--HhcCCCCcEEEecCCCCCCCChhHHH-
Q 039096 24 FDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPL--LKHCKCLTSVDLSSFYHWTEDLPPVL- 100 (554)
Q Consensus 24 ~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~--~~~~~~L~~L~L~~~~~~~~~~~~~l- 100 (554)
...++.|+|.++ .+. .+ +.+...+.+|+.|+++ ++.+..+ +..+++|++|++++|. ++.. ...+
T Consensus 18 ~~~~~~L~L~~n-~I~--~I--e~L~~~l~~L~~L~Ls------~N~I~~l~~l~~L~~L~~L~L~~N~-I~~i-~~~l~ 84 (175)
T PF14580_consen 18 PVKLRELNLRGN-QIS--TI--ENLGATLDKLEVLDLS------NNQITKLEGLPGLPRLKTLDLSNNR-ISSI-SEGLD 84 (175)
T ss_dssp -----------------------S--TT-TT--EEE-T------TS--S--TT----TT--EEE--SS----S--CHHHH
T ss_pred cccccccccccc-ccc--cc--cchhhhhcCCCEEECC------CCCCccccCccChhhhhhcccCCCC-CCcc-ccchH
Confidence 345666777666 221 11 2222134566666666 2233333 4567899999998873 3332 2223
Q ss_pred hhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCcccc
Q 039096 101 KAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAED 180 (554)
Q Consensus 101 ~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~ 180 (554)
..+ ++|++|++++|.. ..+..+..| ..+++|+.|++.+++.-
T Consensus 85 ~~l----p~L~~L~L~~N~I-------------~~l~~l~~L-----~~l~~L~~L~L~~NPv~---------------- 126 (175)
T PF14580_consen 85 KNL----PNLQELYLSNNKI-------------SDLNELEPL-----SSLPKLRVLSLEGNPVC---------------- 126 (175)
T ss_dssp HH-----TT--EEE-TTS----------------SCCCCGGG-----GG-TT--EEE-TT-GGG----------------
T ss_pred HhC----CcCCEEECcCCcC-------------CChHHhHHH-----HcCCCcceeeccCCccc----------------
Confidence 234 5899999998861 234444433 26899999999876321
Q ss_pred CCCCHHHHHHHHhCCCCCcEEEecC
Q 039096 181 ARISEEGLIQLFSGLPLLEELALDV 205 (554)
Q Consensus 181 ~~i~~~~l~~l~~~~~~L~~L~L~~ 205 (554)
.. . .--..+...+|+|+.||-..
T Consensus 127 ~~-~-~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 127 EK-K-NYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp GS-T-THHHHHHHH-TT-SEETTEE
T ss_pred ch-h-hHHHHHHHHcChhheeCCEE
Confidence 00 1 11233445789999888754
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.80 E-value=0.00012 Score=80.15 Aligned_cols=94 Identities=22% Similarity=0.248 Sum_probs=58.6
Q ss_pred eeEEEEecCCCchhchhh-cCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCCcE
Q 039096 5 RTSITLRGNACNLNIVPL-CFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCLTS 83 (554)
Q Consensus 5 r~~L~l~~~~~~l~~l~~-~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~~ 83 (554)
-+.|+++++. +..+|. .+++|+.|+++++ .+. . + |.. ....|+.++++++. -..+...+ ..+|++
T Consensus 201 L~~L~Ls~N~--LtsLP~~l~~nL~~L~Ls~N-~Lt-s-L--P~~--l~~~L~~L~Ls~N~---L~~LP~~l--~s~L~~ 266 (754)
T PRK15370 201 ITTLILDNNE--LKSLPENLQGNIKTLYANSN-QLT-S-I--PAT--LPDTIQEMELSINR---ITELPERL--PSALQS 266 (754)
T ss_pred CcEEEecCCC--CCcCChhhccCCCEEECCCC-ccc-c-C--Chh--hhccccEEECcCCc---cCcCChhH--hCCCCE
Confidence 3578888773 445665 3579999999988 443 1 2 221 12468888888432 11222212 358999
Q ss_pred EEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCC
Q 039096 84 VDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSF 120 (554)
Q Consensus 84 L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 120 (554)
|++++| .+. .+|.. ++ .+|+.|++++|.+
T Consensus 267 L~Ls~N-~L~-~LP~~---l~---~sL~~L~Ls~N~L 295 (754)
T PRK15370 267 LDLFHN-KIS-CLPEN---LP---EELRYLSVYDNSI 295 (754)
T ss_pred EECcCC-ccC-ccccc---cC---CCCcEEECCCCcc
Confidence 999876 333 34432 33 5899999999863
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.79 E-value=3e-05 Score=86.23 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=26.5
Q ss_pred HhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCC
Q 039096 75 LKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTS 119 (554)
Q Consensus 75 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 119 (554)
+..+|.|++|||++|.. ...+|..++.+. +|++|+++++.
T Consensus 567 f~~m~~LrVLDLs~~~~-l~~LP~~I~~Li----~LryL~L~~t~ 606 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSS-LSKLPSSIGELV----HLRYLDLSDTG 606 (889)
T ss_pred HhhCcceEEEECCCCCc-cCcCChHHhhhh----hhhcccccCCC
Confidence 55677777777777633 345566666663 77777777654
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.64 E-value=1e-05 Score=78.45 Aligned_cols=85 Identities=14% Similarity=0.064 Sum_probs=57.3
Q ss_pred HHHHhcCCccEEEEeccCCCCh-hHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecc
Q 039096 283 LASLLRETLVVIKIYCCENLGA-VASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIE 361 (554)
Q Consensus 283 l~~~~~~~L~~L~l~~c~~~~~-~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 361 (554)
....+ ++|++|+++++..... ...+.. ...+++|.++.+.+......++ +++..|+.|++.++
T Consensus 269 cf~~L-~~L~~lnlsnN~i~~i~~~aFe~----~a~l~eL~L~~N~l~~v~~~~f-----------~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 269 CFKKL-PNLRKLNLSNNKITRIEDGAFEG----AAELQELYLTRNKLEFVSSGMF-----------QGLSGLKTLSLYDN 332 (498)
T ss_pred HHhhc-ccceEeccCCCccchhhhhhhcc----hhhhhhhhcCcchHHHHHHHhh-----------hccccceeeeecCC
Confidence 34445 7888888888653211 112322 3448888887776444444444 78899999999655
Q ss_pred cCCccCccccccCcCCCCCCEEEEe
Q 039096 362 VGELLTPLPVAGLDECPILENIRIK 386 (554)
Q Consensus 362 ~~~~~t~l~~~~l~~~~~L~~L~l~ 386 (554)
. +|.+.+..+....+|.+|.+-
T Consensus 333 ~---it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 333 Q---ITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred e---eEEEecccccccceeeeeehc
Confidence 4 888888888888888888875
No 37
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=0.00019 Score=77.84 Aligned_cols=157 Identities=18% Similarity=0.201 Sum_probs=84.3
Q ss_pred CCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEe
Q 039096 79 KCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHL 158 (554)
Q Consensus 79 ~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l 158 (554)
.+|++|+++|...+...++..++... |+|+.|.+++-. +....+..+ ..++|+|..||+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~L---PsL~sL~i~~~~----~~~~dF~~l--------------c~sFpNL~sLDI 180 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTML---PSLRSLVISGRQ----FDNDDFSQL--------------CASFPNLRSLDI 180 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhC---cccceEEecCce----ecchhHHHH--------------hhccCccceeec
Confidence 58899999887677777766665543 789999888654 333333333 246677788888
Q ss_pred cccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcc
Q 039096 159 AETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWL 238 (554)
Q Consensus 159 ~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L 238 (554)
+++ ++++- ..+ ..+++|+.|.+.+- .+..... +..+ -++++|+.|+++.
T Consensus 181 S~T--------------------nI~nl--~GI-S~LknLq~L~mrnL-e~e~~~~-l~~L-F~L~~L~vLDIS~----- 229 (699)
T KOG3665|consen 181 SGT--------------------NISNL--SGI-SRLKNLQVLSMRNL-EFESYQD-LIDL-FNLKKLRVLDISR----- 229 (699)
T ss_pred CCC--------------------CccCc--HHH-hccccHHHHhccCC-CCCchhh-HHHH-hcccCCCeeeccc-----
Confidence 763 22221 112 35677777766442 2332211 3444 3455555444433
Q ss_pred cEEEecCCCCCCHH-HH---HHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEE
Q 039096 239 ESLSIKNCGDLSDM-SL---VAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKI 296 (554)
Q Consensus 239 ~~L~l~~~~~l~~~-~l---~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l 296 (554)
-.+..+. -+ .+....+|+|+.||.++.. ++++-+..+.... |+|+.+..
T Consensus 230 -------~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd-i~~~~le~ll~sH-~~L~~i~~ 282 (699)
T KOG3665|consen 230 -------DKNNDDTKIIEQYLECGMVLPELRFLDCSGTD-INEEILEELLNSH-PNLQQIAA 282 (699)
T ss_pred -------cccccchHHHHHHHHhcccCccccEEecCCcc-hhHHHHHHHHHhC-ccHhhhhh
Confidence 2211111 01 1122235667777766655 5655555555544 55555443
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.48 E-value=0.00013 Score=81.31 Aligned_cols=106 Identities=20% Similarity=0.128 Sum_probs=65.5
Q ss_pred CccceeEEEEecCCCchhchhh--cCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcC
Q 039096 1 WRATRTSITLRGNACNLNIVPL--CFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHC 78 (554)
Q Consensus 1 ~~~~r~~L~l~~~~~~l~~l~~--~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~ 78 (554)
|.+.|+--.+++. +..++. .++.|++|-+..+..+-.... ..+...++.|.+|+++++ .....++..++.+
T Consensus 522 ~~~~rr~s~~~~~---~~~~~~~~~~~~L~tLll~~n~~~l~~is--~~ff~~m~~LrVLDLs~~--~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 522 WNSVRRMSLMNNK---IEHIAGSSENPKLRTLLLQRNSDWLLEIS--GEFFRSLPLLRVLDLSGN--SSLSKLPSSIGEL 594 (889)
T ss_pred hhheeEEEEeccc---hhhccCCCCCCccceEEEeecchhhhhcC--HHHHhhCcceEEEECCCC--CccCcCChHHhhh
Confidence 5556666555544 222333 456788877766521111111 211226788888888842 1244566678888
Q ss_pred CCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCC
Q 039096 79 KCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTS 119 (554)
Q Consensus 79 ~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 119 (554)
-+|++|++++.. -..+|..+..+ +.|.+|++.++.
T Consensus 595 i~LryL~L~~t~--I~~LP~~l~~L----k~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 595 VHLRYLDLSDTG--ISHLPSGLGNL----KKLIYLNLEVTG 629 (889)
T ss_pred hhhhcccccCCC--ccccchHHHHH----Hhhheecccccc
Confidence 899999998763 23678888877 689999998764
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.41 E-value=6.3e-05 Score=70.40 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=12.6
Q ss_pred HHHhccCCCCCEEEecc
Q 039096 144 VSIATNCPRLTLLHLAE 160 (554)
Q Consensus 144 ~~~~~~~~~L~~L~l~~ 160 (554)
..+...|.+|+.|.+++
T Consensus 175 ~hildf~~~l~~l~vs~ 191 (490)
T KOG1259|consen 175 SHVLDFCTQLVALVVTP 191 (490)
T ss_pred HHHHHhhhheeEEEecC
Confidence 44555788999998865
No 40
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.37 E-value=1.7e-05 Score=68.14 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=16.9
Q ss_pred hhHHHHHHHhccccceeeeccchhhHH
Q 039096 473 SRLAAALISNCITLRKVFVHCTAREHF 499 (554)
Q Consensus 473 ~lp~~~~l~~~~~L~~L~i~~~~~~~~ 499 (554)
++|.+ ++.++.|++|.|.|.....+
T Consensus 164 ~lpke--ig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 164 SLPKE--IGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred hCcHH--HHHHHHHHHHhcccceeeec
Confidence 34666 77777888888877664443
No 41
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.00014 Score=64.46 Aligned_cols=61 Identities=31% Similarity=0.512 Sum_probs=34.8
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCC
Q 039096 240 SLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENL 302 (554)
Q Consensus 240 ~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~ 302 (554)
.|.+.+|..+.|..+..+....++|+.|+|++|+.||+.|+..+... ++|+.|.+.+-+.+
T Consensus 129 ~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l--knLr~L~l~~l~~v 189 (221)
T KOG3864|consen 129 SLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL--KNLRRLHLYDLPYV 189 (221)
T ss_pred hheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh--hhhHHHHhcCchhh
Confidence 45555555555655555555556666666666666666665555443 56666655554433
No 42
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.0001 Score=65.27 Aligned_cols=84 Identities=14% Similarity=0.224 Sum_probs=71.2
Q ss_pred cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCC
Q 039096 237 WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRD 316 (554)
Q Consensus 237 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~ 316 (554)
.++.++-+++. |...++..+.. ++.++.|.+.+|..+.|.++..+.... ++|+.|+|++|+.+ ++.++..+.. .+
T Consensus 102 ~IeaVDAsds~-I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~-~~L~~L~lsgC~rI-T~~GL~~L~~-lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLA-PSLQDLDLSGCPRI-TDGGLACLLK-LK 176 (221)
T ss_pred eEEEEecCCch-HHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccc-cchheeeccCCCee-chhHHHHHHH-hh
Confidence 57788888887 89999998876 999999999999999999999998855 99999999999999 5667766554 77
Q ss_pred CccEEEeee
Q 039096 317 RIQKLHIDC 325 (554)
Q Consensus 317 ~L~~L~l~~ 325 (554)
+|+.|.+..
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 788887743
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.00039 Score=65.27 Aligned_cols=84 Identities=18% Similarity=0.129 Sum_probs=49.2
Q ss_pred CCcccceeecccccccCcccHHHHHhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHH
Q 039096 51 MDPRLLADLLQMSFLCFGAEFVPLLKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEII 130 (554)
Q Consensus 51 ~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~ 130 (554)
...+++.+++....--.=..+..+++++|.|+.|+|+.| ..... +..+|-...+|+.|-|.++. +.-....
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~----I~~lp~p~~nl~~lVLNgT~----L~w~~~~ 139 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSD----IKSLPLPLKNLRVLVLNGTG----LSWTQST 139 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCc----cccCcccccceEEEEEcCCC----CChhhhh
Confidence 344555555542111112234455788999999999866 33332 44454445789999998876 5555555
Q ss_pred HHHHhCCChHhhH
Q 039096 131 EIIAARPNLNKWA 143 (554)
Q Consensus 131 ~l~~~~~~L~~L~ 143 (554)
......|.+++|+
T Consensus 140 s~l~~lP~vtelH 152 (418)
T KOG2982|consen 140 SSLDDLPKVTELH 152 (418)
T ss_pred hhhhcchhhhhhh
Confidence 5555566665553
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.26 E-value=0.00027 Score=51.10 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=34.8
Q ss_pred CCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEe
Q 039096 316 DRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIK 386 (554)
Q Consensus 316 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~ 386 (554)
|+|++|+++.+.+.......+ ..+++|++|+++++. ++.+....+.++++|+.|+++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f-----------~~l~~L~~L~l~~N~---l~~i~~~~f~~l~~L~~L~l~ 57 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSF-----------SNLPNLETLDLSNNN---LTSIPPDAFSNLPNLRYLDLS 57 (61)
T ss_dssp TTESEEEETSSTESEECTTTT-----------TTGTTESEEEETSSS---ESEEETTTTTTSTTESEEEET
T ss_pred CcCcEEECCCCCCCccCHHHH-----------cCCCCCCEeEccCCc---cCccCHHHHcCCCCCCEEeCc
Confidence 356666665554444444444 566777777776444 666666666677777777775
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.06 E-value=0.00052 Score=49.58 Aligned_cols=60 Identities=22% Similarity=0.327 Sum_probs=47.9
Q ss_pred CCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCC
Q 039096 351 KSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGD 423 (554)
Q Consensus 351 ~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~ 423 (554)
|+|++|++++|. ++.++...+.++++|++|+++ ++ .+. ......+..+++|+.|+++.|.
T Consensus 1 p~L~~L~l~~n~---l~~i~~~~f~~l~~L~~L~l~---~N----~l~---~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK---LTEIPPDSFSNLPNLETLDLS---NN----NLT---SIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST---ESEECTTTTTTGTTESEEEET---SS----SES---EEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC---CCccCHHHHcCCCCCCEeEcc---CC----ccC---ccCHHHHcCCCCCCEEeCcCCc
Confidence 579999998775 888888888999999999997 44 444 3334567789999999998554
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.00026 Score=66.40 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=28.1
Q ss_pred HHhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCC
Q 039096 74 LLKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSF 120 (554)
Q Consensus 74 ~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 120 (554)
+...+..++.+||.+| .+++ +. .+..+.++++.|+.|+++.|+.
T Consensus 66 ~~~~~~~v~elDL~~N-~iSd-Ws-eI~~ile~lP~l~~LNls~N~L 109 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGN-LISD-WS-EIGAILEQLPALTTLNLSCNSL 109 (418)
T ss_pred HHHHhhhhhhhhcccc-hhcc-HH-HHHHHHhcCccceEeeccCCcC
Confidence 3456888999999887 3333 11 1233333446899999998874
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.99 E-value=0.00014 Score=68.10 Aligned_cols=117 Identities=19% Similarity=0.208 Sum_probs=65.9
Q ss_pred CCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccC----------cccEEEecCCCCCCHHHHHHHHhcCCC
Q 039096 194 GLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHS----------WLESLSIKNCGDLSDMSLVAIGRGCSK 263 (554)
Q Consensus 194 ~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~----------~L~~L~l~~~~~l~~~~l~~l~~~~~~ 263 (554)
.++.|+++|+++ +.|+... +.+ .-.|.++.|+++...- +|+.|++++|. ++.. ...-..+-+
T Consensus 282 TWq~LtelDLS~-N~I~~iD---ESv-KL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~-Ls~~--~Gwh~KLGN 353 (490)
T KOG1259|consen 282 TWQELTELDLSG-NLITQID---ESV-KLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNL-LAEC--VGWHLKLGN 353 (490)
T ss_pred hHhhhhhccccc-cchhhhh---hhh-hhccceeEEeccccceeeehhhhhcccceEeecccch-hHhh--hhhHhhhcC
Confidence 345677777766 3353321 122 4457777777765431 77778888776 3322 111122567
Q ss_pred CcEEEecCCCCCCH-HHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeee
Q 039096 264 LVKFEVEGCKNITV-DGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCV 326 (554)
Q Consensus 264 L~~L~L~~c~~i~~-~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~ 326 (554)
++.|.+++|. +.+ .|+..+ -+|.+|++.++. +........+. ..|.|+.+.+..+
T Consensus 354 IKtL~La~N~-iE~LSGL~KL-----YSLvnLDl~~N~-Ie~ldeV~~IG-~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 354 IKTLKLAQNK-IETLSGLRKL-----YSLVNLDLSSNQ-IEELDEVNHIG-NLPCLETLRLTGN 409 (490)
T ss_pred Eeeeehhhhh-HhhhhhhHhh-----hhheeccccccc-hhhHHHhcccc-cccHHHHHhhcCC
Confidence 8888888776 332 233333 478888887754 32333343333 3677888777544
No 48
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.95 E-value=4.3e-05 Score=65.69 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=64.0
Q ss_pred chhchhh--cCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHH---HhcCCCCcEEEecCCC
Q 039096 16 NLNIVPL--CFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPL---LKHCKCLTSVDLSSFY 90 (554)
Q Consensus 16 ~l~~l~~--~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~ 90 (554)
.+.++|. .+.+++.|.+|++ .+. . .+|.++ .+.+|+.+++. .+.+..+ ++.+++|+.|+++-+
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHN-Kl~-~--vppnia-~l~nlevln~~------nnqie~lp~~issl~klr~lnvgmn- 89 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHN-KLT-V--VPPNIA-ELKNLEVLNLS------NNQIEELPTSISSLPKLRILNVGMN- 89 (264)
T ss_pred cHhhcccccchhhhhhhhcccC-cee-e--cCCcHH-Hhhhhhhhhcc------cchhhhcChhhhhchhhhheecchh-
Confidence 4555665 3467888889987 221 1 237888 89999999998 5555554 788999999999754
Q ss_pred CCCCChhHHHhhcCcCCCCccEEEcCCCCC
Q 039096 91 HWTEDLPPVLKAYPDKSAILTCLNLLKTSF 120 (554)
Q Consensus 91 ~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 120 (554)
-....|.+++.+| .|+.|++++|..
T Consensus 90 -rl~~lprgfgs~p----~levldltynnl 114 (264)
T KOG0617|consen 90 -RLNILPRGFGSFP----ALEVLDLTYNNL 114 (264)
T ss_pred -hhhcCccccCCCc----hhhhhhcccccc
Confidence 2345567777775 899999998874
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.79 E-value=0.00033 Score=73.28 Aligned_cols=97 Identities=24% Similarity=0.216 Sum_probs=63.1
Q ss_pred CCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeeccccc-----------CcccEEEecCCCCCCHHHHHHHHhcCC
Q 039096 194 GLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLH-----------SWLESLSIKNCGDLSDMSLVAIGRGCS 262 (554)
Q Consensus 194 ~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~-----------~~L~~L~l~~~~~l~~~~l~~l~~~~~ 262 (554)
-++.|+.|+|++ +++++ ...+ ..|++|+.|+|+.+. ..|..|.+++|. ++. +..+.+ +.
T Consensus 185 ll~ale~LnLsh-Nk~~~----v~~L-r~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~-l~t--L~gie~-Lk 254 (1096)
T KOG1859|consen 185 LLPALESLNLSH-NKFTK----VDNL-RRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA-LTT--LRGIEN-LK 254 (1096)
T ss_pred HHHHhhhhccch-hhhhh----hHHH-HhcccccccccccchhccccccchhhhhheeeeecccH-HHh--hhhHHh-hh
Confidence 457899999988 55754 3466 789999999987542 168888888876 333 333433 77
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCC
Q 039096 263 KLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENL 302 (554)
Q Consensus 263 ~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~ 302 (554)
+|+.||+++|-......+..+. .+ ..|+.|++.+++.-
T Consensus 255 sL~~LDlsyNll~~hseL~pLw-sL-s~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLW-SL-SSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHH-HH-HHHHHHhhcCCccc
Confidence 7888888877622222233222 22 57888888776543
No 50
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.37 E-value=0.0039 Score=36.16 Aligned_cols=24 Identities=46% Similarity=0.971 Sum_probs=19.8
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHH
Q 039096 261 CSKLVKFEVEGCKNITVDGLRTLA 284 (554)
Q Consensus 261 ~~~L~~L~L~~c~~i~~~~~~~l~ 284 (554)
|++|+.|+|++|+.++|.|+..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 678888888888888888887764
No 51
>PLN03150 hypothetical protein; Provisional
Probab=95.83 E-value=0.024 Score=61.76 Aligned_cols=84 Identities=24% Similarity=0.190 Sum_probs=47.8
Q ss_pred CcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCCcEEEecCCCCCCCChhHHHhhcCcC
Q 039096 27 VTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDK 106 (554)
Q Consensus 27 L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~ 106 (554)
++.|+|+++ .+.+... +.+. .+.+|+.|+++++.. ...+...+..+++|+.|+|++| .+.+.+|..+..+
T Consensus 420 v~~L~L~~n-~L~g~ip--~~i~-~L~~L~~L~Ls~N~l--~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L--- 489 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIP--NDIS-KLRHLQSINLSGNSI--RGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQL--- 489 (623)
T ss_pred EEEEECCCC-CccccCC--HHHh-CCCCCCEEECCCCcc--cCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcC---
Confidence 556666665 3433333 3444 666677776662211 0122334566777777777766 5566666666655
Q ss_pred CCCccEEEcCCCCCC
Q 039096 107 SAILTCLNLLKTSFS 121 (554)
Q Consensus 107 ~~~L~~L~L~~~~~~ 121 (554)
++|++|+|++|.+.
T Consensus 490 -~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 490 -TSLRILNLNGNSLS 503 (623)
T ss_pred -CCCCEEECcCCccc
Confidence 47777777776543
No 52
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.33 E-value=0.013 Score=33.92 Aligned_cols=23 Identities=43% Similarity=0.556 Sum_probs=16.3
Q ss_pred CCCCcEEEecCCCCCCCchhhHHHH
Q 039096 195 LPLLEELALDVGKNVRDSGSASEAL 219 (554)
Q Consensus 195 ~~~L~~L~L~~c~~l~~~~~~l~~l 219 (554)
|++|++|+|++|.+++|.+ +..+
T Consensus 1 c~~L~~L~l~~C~~itD~g--l~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG--LQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH--HHHH
Confidence 5677777777777777766 4455
No 53
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.28 E-value=0.0037 Score=58.35 Aligned_cols=105 Identities=20% Similarity=0.245 Sum_probs=56.2
Q ss_pred CCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEE
Q 039096 78 CKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLH 157 (554)
Q Consensus 78 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~ 157 (554)
+.+.++|++.|| .+++. ....++ +.|+.|.|+-|. | ..|+.+ ..|++|++|+
T Consensus 18 l~~vkKLNcwg~-~L~DI--sic~kM----p~lEVLsLSvNk----I------------ssL~pl-----~rCtrLkElY 69 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI--SICEKM----PLLEVLSLSVNK----I------------SSLAPL-----QRCTRLKELY 69 (388)
T ss_pred HHHhhhhcccCC-CccHH--HHHHhc----ccceeEEeeccc----c------------ccchhH-----HHHHHHHHHH
Confidence 457788888887 33332 123334 689999998765 2 122111 2566666666
Q ss_pred ecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHH-HHHhcCCCCcEee
Q 039096 158 LAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASE-ALKSKCVNLKGLK 230 (554)
Q Consensus 158 l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~-~l~~~~~~L~~L~ 230 (554)
|+. +.|.+..-.+..+++|+|+.|+|..++.....|.... .+.+.+|+|++|+
T Consensus 70 LRk--------------------N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 70 LRK--------------------NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHh--------------------cccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 654 2233322222335677777777766554444443222 1225667776554
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=0.0055 Score=57.20 Aligned_cols=84 Identities=19% Similarity=0.309 Sum_probs=48.5
Q ss_pred HhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecC
Q 039096 192 FSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEG 271 (554)
Q Consensus 192 ~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~ 271 (554)
...++.|+.|.|+. ++|+. +..+ ..|.+|++ |+|..|. |.+..-.....++|+|+.|+|..
T Consensus 37 c~kMp~lEVLsLSv-NkIss----L~pl-~rCtrLkE------------lYLRkN~-I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSV-NKISS----LAPL-QRCTRLKE------------LYLRKNC-IESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHhcccceeEEeec-ccccc----chhH-HHHHHHHH------------HHHHhcc-cccHHHHHHHhcCchhhhHhhcc
Confidence 45667777777766 44533 4455 56666664 4444444 55555455556677777777777
Q ss_pred CCCCCHHHHH---HHHHHhcCCccEEE
Q 039096 272 CKNITVDGLR---TLASLLRETLVVIK 295 (554)
Q Consensus 272 c~~i~~~~~~---~l~~~~~~~L~~L~ 295 (554)
|+-.+..|-. .+...+ |+|++|+
T Consensus 98 NPCc~~ag~nYR~~VLR~L-PnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVL-PNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHc-ccchhcc
Confidence 6654433322 233444 6777765
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.25 E-value=0.011 Score=62.42 Aligned_cols=104 Identities=16% Similarity=0.121 Sum_probs=52.2
Q ss_pred CCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCc
Q 039096 289 ETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTP 368 (554)
Q Consensus 289 ~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~ 368 (554)
+.|+.|+++.+... .. ..+ ..|+.|++|||++|.+.....-.. ..|+ |..|.++++. ++.
T Consensus 187 ~ale~LnLshNk~~-~v---~~L-r~l~~LkhLDlsyN~L~~vp~l~~-----------~gc~-L~~L~lrnN~---l~t 246 (1096)
T KOG1859|consen 187 PALESLNLSHNKFT-KV---DNL-RRLPKLKHLDLSYNCLRHVPQLSM-----------VGCK-LQLLNLRNNA---LTT 246 (1096)
T ss_pred HHhhhhccchhhhh-hh---HHH-Hhcccccccccccchhccccccch-----------hhhh-heeeeecccH---HHh
Confidence 66777777765433 22 222 236667777776664333222222 3344 7777775433 332
Q ss_pred cccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCC
Q 039096 369 LPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGD 423 (554)
Q Consensus 369 l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~ 423 (554)
..++.++.+|+.|++++ +| +. .-..+.-+..+..|+.|+|..|-
T Consensus 247 --L~gie~LksL~~LDlsy--Nl-----l~--~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 247 --LRGIENLKSLYGLDLSY--NL-----LS--EHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred --hhhHHhhhhhhccchhH--hh-----hh--cchhhhHHHHHHHHHHHhhcCCc
Confidence 24456667777777763 33 11 01112233335566666666443
No 56
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.23 E-value=0.0066 Score=63.24 Aligned_cols=213 Identities=16% Similarity=0.090 Sum_probs=111.8
Q ss_pred CcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecc
Q 039096 81 LTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAE 160 (554)
Q Consensus 81 L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~ 160 (554)
+..|.|.+|....... ..+.........|+.|+++.|. +++.+...+....+..+ +.|+.|++..
T Consensus 89 l~~L~L~~~~l~~~~~-~~l~~~l~t~~~L~~L~l~~n~----l~~~g~~~l~~~l~~~~----------~~l~~L~l~~ 153 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGA-EELAQALKTLPTLGQLDLSGNN----LGDEGARLLCEGLRLPQ----------CLLQTLELVS 153 (478)
T ss_pred HHHhhhhhCccccchH-HHHHHHhcccccHhHhhcccCC----CccHhHHHHHhhcccch----------HHHHHHHhhc
Confidence 8888888884433333 3344433355689999999887 66788877754444331 2334444444
Q ss_pred cccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccE
Q 039096 161 TSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLES 240 (554)
Q Consensus 161 c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~ 240 (554)
|.. .......+......+..++.++++.|. +...+ ...+.+..++ ......+++.
T Consensus 154 c~l-----------------~~~g~~~l~~~L~~~~~l~~l~l~~n~-l~~~g--~~~l~~~l~~-----~~~~~~~le~ 208 (478)
T KOG4308|consen 154 CSL-----------------TSEGAAPLAAVLEKNEHLTELDLSLNG-LIELG--LLVLSQALES-----AASPLSSLET 208 (478)
T ss_pred ccc-----------------cccchHHHHHHHhcccchhHHHHHhcc-cchhh--hHHHhhhhhh-----hhcccccHHH
Confidence 310 111112222223336677777777654 32333 2222222221 0001125556
Q ss_pred EEecCCCCCCHHHHHHHHhc---CCC-CcEEEecCCCCCCHHHHHHHHHHhc---CCccEEEEeccCCCChh-HHHHHHh
Q 039096 241 LSIKNCGDLSDMSLVAIGRG---CSK-LVKFEVEGCKNITVDGLRTLASLLR---ETLVVIKIYCCENLGAV-ASCKALK 312 (554)
Q Consensus 241 L~l~~~~~l~~~~l~~l~~~---~~~-L~~L~L~~c~~i~~~~~~~l~~~~~---~~L~~L~l~~c~~~~~~-~~l~~l~ 312 (554)
|.+.+|. ++......+... .+. +.+|++..|. +.|.|+..+...++ +.++++++..|...... ..+....
T Consensus 209 L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l 286 (478)
T KOG4308|consen 209 LKLSRCG-VTSSSCALLDEVLASGESLLRELDLASNK-LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVL 286 (478)
T ss_pred HhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhcC-cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHH
Confidence 6666666 555544443332 233 5556776666 67777766665441 34577777776544211 2344445
Q ss_pred hcCCCccEEEeeeeeccccchhh
Q 039096 313 PIRDRIQKLHIDCVWDGIRSSEA 335 (554)
Q Consensus 313 ~~~~~L~~L~l~~~~~~~~~~~~ 335 (554)
..|++++++.++++.+++.....
T Consensus 287 ~~~~~l~~l~l~~n~l~~~~~~~ 309 (478)
T KOG4308|consen 287 VSCRQLEELSLSNNPLTDYGVEL 309 (478)
T ss_pred hhhHHHHHhhcccCccccHHHHH
Confidence 55677777777766555554443
No 57
>PLN03150 hypothetical protein; Provisional
Probab=94.95 E-value=0.036 Score=60.39 Aligned_cols=89 Identities=15% Similarity=0.063 Sum_probs=60.1
Q ss_pred ccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCC
Q 039096 318 IQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLL 397 (554)
Q Consensus 318 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l 397 (554)
++.|+++.+.+.......+ ..+++|+.|+|+++. +++..+..+..+++|+.|+++ ++.....+
T Consensus 420 v~~L~L~~n~L~g~ip~~i-----------~~L~~L~~L~Ls~N~---l~g~iP~~~~~l~~L~~LdLs---~N~lsg~i 482 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI-----------SKLRHLQSINLSGNS---IRGNIPPSLGSITSLEVLDLS---YNSFNGSI 482 (623)
T ss_pred EEEEECCCCCccccCCHHH-----------hCCCCCCEEECCCCc---ccCcCChHHhCCCCCCEEECC---CCCCCCCC
Confidence 6667776555444444445 678889999987665 665555557888899999987 55333222
Q ss_pred CccccchhhhhccCCCccceeeecCCccccccc
Q 039096 398 RDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQA 430 (554)
Q Consensus 398 ~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~~ 430 (554)
+ ..+.++++|+.|+++.|.+++..+.
T Consensus 483 P-------~~l~~L~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 483 P-------ESLGQLTSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred c-------hHHhcCCCCCEEECcCCcccccCCh
Confidence 2 4577788899999987777765443
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.75 E-value=0.011 Score=54.92 Aligned_cols=63 Identities=22% Similarity=0.300 Sum_probs=35.2
Q ss_pred cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCH-HHHHHHHHHhcCCccEEEEeccCCC
Q 039096 237 WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITV-DGLRTLASLLRETLVVIKIYCCENL 302 (554)
Q Consensus 237 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~-~~~~~l~~~~~~~L~~L~l~~c~~~ 302 (554)
+|++|.++.|..-...++..++..+|+|++|++++|. +.+ ..+..+. .+ ++|..|++.+|...
T Consensus 66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~-~l-~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLK-EL-ENLKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhh-hh-cchhhhhcccCCcc
Confidence 3446666666322334455556667888888888776 443 1222222 22 56777777777544
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.73 E-value=0.004 Score=57.76 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=6.2
Q ss_pred cCCCCceEEeeccc
Q 039096 349 RWKSLKELSFWIEV 362 (554)
Q Consensus 349 ~~~~L~~L~l~~c~ 362 (554)
.+.+|+.|++.+|+
T Consensus 114 ~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 114 ELENLKSLDLFNCS 127 (260)
T ss_pred hhcchhhhhcccCC
Confidence 34444444444444
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.61 E-value=0.021 Score=57.55 Aligned_cols=131 Identities=13% Similarity=0.178 Sum_probs=71.6
Q ss_pred cCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcE
Q 039096 149 NCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKG 228 (554)
Q Consensus 149 ~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~ 228 (554)
.|++++.|++++| .++.. . .--++|++|.+++|.+++... ..+ .++|+.
T Consensus 50 ~~~~l~~L~Is~c-~L~sL---------------------P---~LP~sLtsL~Lsnc~nLtsLP---~~L---P~nLe~ 98 (426)
T PRK15386 50 EARASGRLYIKDC-DIESL---------------------P---VLPNELTEITIENCNNLTTLP---GSI---PEGLEK 98 (426)
T ss_pred HhcCCCEEEeCCC-CCccc---------------------C---CCCCCCcEEEccCCCCcccCC---chh---hhhhhh
Confidence 5688999999876 11111 1 112469999999988774321 122 246777
Q ss_pred eecccccC------cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCC
Q 039096 229 LKLGQLHS------WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENL 302 (554)
Q Consensus 229 L~l~~~~~------~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~ 302 (554)
|.+.+|.. +|+.|++..+. ... +..--++|+.|.+.++......++ ...+|++|++|.+.+|..+
T Consensus 99 L~Ls~Cs~L~sLP~sLe~L~L~~n~-~~~-----L~~LPssLk~L~I~~~n~~~~~~l---p~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 99 LTVCHCPEISGLPESVRSLEIKGSA-TDS-----IKNVPNGLTSLSINSYNPENQARI---DNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred eEccCcccccccccccceEEeCCCC-Ccc-----cccCcchHhheecccccccccccc---ccccCCcccEEEecCCCcc
Confidence 77777632 67777776443 111 111124567777654321111111 1224467888888888755
Q ss_pred ChhHHHHHHhhcCCCccEEEeee
Q 039096 303 GAVASCKALKPIRDRIQKLHIDC 325 (554)
Q Consensus 303 ~~~~~l~~l~~~~~~L~~L~l~~ 325 (554)
..... ...+|+.|.++.
T Consensus 170 ~LP~~------LP~SLk~L~ls~ 186 (426)
T PRK15386 170 ILPEK------LPESLQSITLHI 186 (426)
T ss_pred cCccc------ccccCcEEEecc
Confidence 21111 124688888743
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.37 E-value=0.089 Score=53.15 Aligned_cols=16 Identities=6% Similarity=-0.016 Sum_probs=12.9
Q ss_pred hCCCCCcEEEecCCCCC
Q 039096 193 SGLPLLEELALDVGKNV 209 (554)
Q Consensus 193 ~~~~~L~~L~L~~c~~l 209 (554)
..|+++++|++++| .+
T Consensus 49 ~~~~~l~~L~Is~c-~L 64 (426)
T PRK15386 49 EEARASGRLYIKDC-DI 64 (426)
T ss_pred HHhcCCCEEEeCCC-CC
Confidence 35789999999988 35
No 62
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.14 E-value=0.018 Score=59.98 Aligned_cols=216 Identities=21% Similarity=0.236 Sum_probs=127.9
Q ss_pred ccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHH
Q 039096 110 LTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLI 189 (554)
Q Consensus 110 L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~ 189 (554)
+..|.+.+|. +.+.+...+.+ .....+.|..|++++ +.+.+.+..
T Consensus 89 l~~L~L~~~~----l~~~~~~~l~~-----------~l~t~~~L~~L~l~~--------------------n~l~~~g~~ 133 (478)
T KOG4308|consen 89 LLHLSLANNR----LGDRGAEELAQ-----------ALKTLPTLGQLDLSG--------------------NNLGDEGAR 133 (478)
T ss_pred HHHhhhhhCc----cccchHHHHHH-----------HhcccccHhHhhccc--------------------CCCccHhHH
Confidence 7777888776 55555555532 223567788888876 345566666
Q ss_pred HHHhCCC----CCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHh------
Q 039096 190 QLFSGLP----LLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGR------ 259 (554)
Q Consensus 190 ~l~~~~~----~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~------ 259 (554)
.+....+ .|+.|++..|. +++.+.. .++..+.+.. .++.++++.|. +...+...+..
T Consensus 134 ~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~--~l~~~L~~~~---------~l~~l~l~~n~-l~~~g~~~l~~~l~~~~ 200 (478)
T KOG4308|consen 134 LLCEGLRLPQCLLQTLELVSCS-LTSEGAA--PLAAVLEKNE---------HLTELDLSLNG-LIELGLLVLSQALESAA 200 (478)
T ss_pred HHHhhcccchHHHHHHHhhccc-ccccchH--HHHHHHhccc---------chhHHHHHhcc-cchhhhHHHhhhhhhhh
Confidence 6654443 46778888875 7666632 4433332222 33355666665 33333322222
Q ss_pred -cCCCCcEEEecCCCCCCHHHHHHHHHHhc--CC-ccEEEEeccCCCChhHHHHHHhhc---C-CCccEEEeeeeecccc
Q 039096 260 -GCSKLVKFEVEGCKNITVDGLRTLASLLR--ET-LVVIKIYCCENLGAVASCKALKPI---R-DRIQKLHIDCVWDGIR 331 (554)
Q Consensus 260 -~~~~L~~L~L~~c~~i~~~~~~~l~~~~~--~~-L~~L~l~~c~~~~~~~~l~~l~~~---~-~~L~~L~l~~~~~~~~ 331 (554)
...++++|.+.+|. ++..+...+...+. ++ +.+|++..+..- +.++..+... . +.++++++..+.++..
T Consensus 201 ~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~--d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~ 277 (478)
T KOG4308|consen 201 SPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLASNKLG--DVGVEKLLPCLSVLSETLRVLDLSRNSITEK 277 (478)
T ss_pred cccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhcCcc--hHHHHHHHHHhcccchhhhhhhhhcCCcccc
Confidence 24579999999998 78777776665441 33 666777665433 2233333332 3 4568999977766766
Q ss_pred chhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccC----cCCCCCCEEEEe
Q 039096 332 SSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGL----DECPILENIRIK 386 (554)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l----~~~~~L~~L~l~ 386 (554)
+...++ .....+++++.|.++..+ +++.....+ .....+..+.+.
T Consensus 278 ~~~~L~-------~~l~~~~~l~~l~l~~n~---l~~~~~~~~~~~l~~~~~~~~~~l~ 326 (478)
T KOG4308|consen 278 GVRDLA-------EVLVSCRQLEELSLSNNP---LTDYGVELLLEALERKTPLLHLVLG 326 (478)
T ss_pred chHHHH-------HHHhhhHHHHHhhcccCc---cccHHHHHHHHHhhhcccchhhhcc
Confidence 665553 444678899999998766 555444333 334455555554
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.85 E-value=0.091 Score=34.85 Aligned_cols=35 Identities=43% Similarity=0.534 Sum_probs=24.2
Q ss_pred CCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCC
Q 039096 79 KCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTS 119 (554)
Q Consensus 79 ~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 119 (554)
++|++|+++++ .++ .+|..+..+ ++|+.|++++|.
T Consensus 1 ~~L~~L~l~~N-~i~-~l~~~l~~l----~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNN-QIT-DLPPELSNL----PNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSS-S-S-SHGGHGTTC----TTSSEEEETSSC
T ss_pred CcceEEEccCC-CCc-ccCchHhCC----CCCCEEEecCCC
Confidence 57889999887 444 455555555 589999999886
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.69 E-value=0.047 Score=48.82 Aligned_cols=106 Identities=13% Similarity=0.114 Sum_probs=55.6
Q ss_pred cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCC
Q 039096 237 WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRD 316 (554)
Q Consensus 237 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~ 316 (554)
+...++++++. +.. + ....+++.|..|.+.+|. |+... ..+...+ |+|+.|.+.++... ....+..++. ||
T Consensus 43 ~~d~iDLtdNd-l~~--l-~~lp~l~rL~tLll~nNr-It~I~-p~L~~~~-p~l~~L~LtnNsi~-~l~dl~pLa~-~p 113 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRK--L-DNLPHLPRLHTLLLNNNR-ITRID-PDLDTFL-PNLKTLILTNNSIQ-ELGDLDPLAS-CP 113 (233)
T ss_pred ccceecccccc-hhh--c-ccCCCccccceEEecCCc-ceeec-cchhhhc-cccceEEecCcchh-hhhhcchhcc-CC
Confidence 34466666665 221 1 112236778888888777 65332 1223334 78888888776433 3334444443 77
Q ss_pred CccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEee
Q 039096 317 RIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFW 359 (554)
Q Consensus 317 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 359 (554)
.|++|.+-.+.+....--.. .....+|+|+.||+.
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~--------yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRL--------YVLYKLPSLRTLDFQ 148 (233)
T ss_pred ccceeeecCCchhcccCcee--------EEEEecCcceEeehh
Confidence 77777773333222221111 122566677776664
No 65
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.41 E-value=0.076 Score=29.92 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=15.2
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHH
Q 039096 261 CSKLVKFEVEGCKNITVDGLRTLA 284 (554)
Q Consensus 261 ~~~L~~L~L~~c~~i~~~~~~~l~ 284 (554)
+++|++|+|++|. |+++|+..++
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHhC
Confidence 4678888888887 7888777664
No 66
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.37 E-value=0.11 Score=34.53 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=6.1
Q ss_pred CcCCCCCCEEEEe
Q 039096 374 LDECPILENIRIK 386 (554)
Q Consensus 374 l~~~~~L~~L~l~ 386 (554)
+.+|++|+.|+++
T Consensus 20 l~~l~~L~~L~l~ 32 (44)
T PF12799_consen 20 LSNLPNLETLNLS 32 (44)
T ss_dssp GTTCTTSSEEEET
T ss_pred HhCCCCCCEEEec
Confidence 4444444444444
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.37 E-value=0.072 Score=47.69 Aligned_cols=76 Identities=24% Similarity=0.270 Sum_probs=44.7
Q ss_pred HhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhH-----------
Q 039096 75 LKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWA----------- 143 (554)
Q Consensus 75 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~----------- 143 (554)
+..++.|..|.++.| .++...|. +..+. ++|+.|.+.+|+..+ -..+..+ ..||.|++|.
T Consensus 60 lp~l~rL~tLll~nN-rIt~I~p~-L~~~~---p~l~~L~LtnNsi~~---l~dl~pL-a~~p~L~~Ltll~Npv~~k~~ 130 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNN-RITRIDPD-LDTFL---PNLKTLILTNNSIQE---LGDLDPL-ASCPKLEYLTLLGNPVEHKKN 130 (233)
T ss_pred CCCccccceEEecCC-cceeeccc-hhhhc---cccceEEecCcchhh---hhhcchh-ccCCccceeeecCCchhcccC
Confidence 567788888888766 44443333 33332 578888888876321 1122222 4566666665
Q ss_pred --HHHhccCCCCCEEEec
Q 039096 144 --VSIATNCPRLTLLHLA 159 (554)
Q Consensus 144 --~~~~~~~~~L~~L~l~ 159 (554)
..+....|+|+.||+.
T Consensus 131 YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 131 YRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ceeEEEEecCcceEeehh
Confidence 3334456778888873
No 68
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=92.13 E-value=0.11 Score=53.42 Aligned_cols=130 Identities=14% Similarity=0.090 Sum_probs=62.7
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCC
Q 039096 261 CSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGN 340 (554)
Q Consensus 261 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 340 (554)
+++|+.|++++|+ +++.... .... +.|+.|+++++... .++........|++|.++.+. .......+
T Consensus 162 l~~L~~L~l~~N~-l~~l~~~--~~~~-~~L~~L~ls~N~i~----~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~---- 228 (394)
T COG4886 162 LPNLKNLDLSFND-LSDLPKL--LSNL-SNLNNLDLSGNKIS----DLPPEIELLSALEELDLSNNS-IIELLSSL---- 228 (394)
T ss_pred cccccccccCCch-hhhhhhh--hhhh-hhhhheeccCCccc----cCchhhhhhhhhhhhhhcCCc-ceecchhh----
Confidence 6677777777766 4433221 1022 56777777665432 111111123346666665552 11122222
Q ss_pred ccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeee
Q 039096 341 TSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLD 420 (554)
Q Consensus 341 ~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~ 420 (554)
..+.++..+.+.... +..+ ...+..+++++.|+++ ++ .++ + +..++...+++.|+++
T Consensus 229 -------~~~~~l~~l~l~~n~---~~~~-~~~~~~l~~l~~L~~s---~n----~i~---~--i~~~~~~~~l~~L~~s 285 (394)
T COG4886 229 -------SNLKNLSGLELSNNK---LEDL-PESIGNLSNLETLDLS---NN----QIS---S--ISSLGSLTNLRELDLS 285 (394)
T ss_pred -------hhcccccccccCCce---eeec-cchhccccccceeccc---cc----ccc---c--cccccccCccCEEecc
Confidence 455566665543222 2221 2334566667777775 33 333 1 1125556677777776
Q ss_pred cCCccc
Q 039096 421 FGDTDG 426 (554)
Q Consensus 421 c~~~~~ 426 (554)
.+.++.
T Consensus 286 ~n~~~~ 291 (394)
T COG4886 286 GNSLSN 291 (394)
T ss_pred Cccccc
Confidence 555443
No 69
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.07 E-value=0.21 Score=51.30 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=74.8
Q ss_pred cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCC
Q 039096 237 WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRD 316 (554)
Q Consensus 237 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~ 316 (554)
+|+.|++++|. +++.... ....+.|+.|+++++. +.+.... .... ..|++|.+.+...+.....+ ....
T Consensus 164 ~L~~L~l~~N~-l~~l~~~--~~~~~~L~~L~ls~N~-i~~l~~~--~~~~-~~L~~l~~~~N~~~~~~~~~----~~~~ 232 (394)
T COG4886 164 NLKNLDLSFND-LSDLPKL--LSNLSNLNNLDLSGNK-ISDLPPE--IELL-SALEELDLSNNSIIELLSSL----SNLK 232 (394)
T ss_pred cccccccCCch-hhhhhhh--hhhhhhhhheeccCCc-cccCchh--hhhh-hhhhhhhhcCCcceecchhh----hhcc
Confidence 56677777776 5554322 2137889999999987 5532221 1121 45999999887534222222 2345
Q ss_pred CccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEe
Q 039096 317 RIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIK 386 (554)
Q Consensus 317 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~ 386 (554)
++..+.+..+.+... ...+ ..++++++|+++.+. ++.+.. +....+++.|+++
T Consensus 233 ~l~~l~l~~n~~~~~-~~~~-----------~~l~~l~~L~~s~n~---i~~i~~--~~~~~~l~~L~~s 285 (394)
T COG4886 233 NLSGLELSNNKLEDL-PESI-----------GNLSNLETLDLSNNQ---ISSISS--LGSLTNLRELDLS 285 (394)
T ss_pred cccccccCCceeeec-cchh-----------ccccccceecccccc---cccccc--ccccCccCEEecc
Confidence 577777655543221 2333 678889999997666 555543 6677889999986
No 70
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.73 E-value=0.65 Score=27.28 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=18.5
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHHHh
Q 039096 262 SKLVKFEVEGCKNITVDGLRTLASLL 287 (554)
Q Consensus 262 ~~L~~L~L~~c~~i~~~~~~~l~~~~ 287 (554)
++|++|+|++|. ++++|...+...+
T Consensus 2 ~~L~~LdL~~N~-i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNK-LGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCC-CCHHHHHHHHHHh
Confidence 467888888887 7888877776543
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.93 E-value=0.7 Score=25.87 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=14.0
Q ss_pred CCccEEEcCCCCCCCCCCHHHHHHH
Q 039096 108 AILTCLNLLKTSFSEDYRPQEIIEI 132 (554)
Q Consensus 108 ~~L~~L~L~~~~~~~~i~~~~l~~l 132 (554)
++|++|+|++|. +++.++..+
T Consensus 2 ~~L~~L~l~~n~----i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQ----ITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSB----EHHHHHHHH
T ss_pred CCCCEEEccCCc----CCHHHHHHh
Confidence 578888888776 777777665
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=84.60 E-value=0.42 Score=49.44 Aligned_cols=105 Identities=24% Similarity=0.225 Sum_probs=55.8
Q ss_pred cCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcE
Q 039096 149 NCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKG 228 (554)
Q Consensus 149 ~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~ 228 (554)
.+++|+.|++.++ .| ..+......+++|++|++++ +.|++ +..+ ..++.|+.
T Consensus 93 ~~~~l~~l~l~~n--------------------~i--~~i~~~l~~~~~L~~L~ls~-N~I~~----i~~l-~~l~~L~~ 144 (414)
T KOG0531|consen 93 KLKSLEALDLYDN--------------------KI--EKIENLLSSLVNLQVLDLSF-NKITK----LEGL-STLTLLKE 144 (414)
T ss_pred cccceeeeecccc--------------------ch--hhcccchhhhhcchheeccc-ccccc----ccch-hhccchhh
Confidence 5678888888653 22 22222134688999999988 55765 3344 45555665
Q ss_pred eecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccC
Q 039096 229 LKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCE 300 (554)
Q Consensus 229 L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 300 (554)
|+ +.+|. +++.. .+. .++.|+.+++.+|. +++..-.. ...+ .+++.+++.++.
T Consensus 145 L~------------l~~N~-i~~~~--~~~-~l~~L~~l~l~~n~-i~~ie~~~-~~~~-~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 145 LN------------LSGNL-ISDIS--GLE-SLKSLKLLDLSYNR-IVDIENDE-LSEL-ISLEELDLGGNS 197 (414)
T ss_pred he------------eccCc-chhcc--CCc-cchhhhcccCCcch-hhhhhhhh-hhhc-cchHHHhccCCc
Confidence 44 44444 33211 111 15566666776666 33222200 1222 566666666654
No 73
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=81.63 E-value=0.26 Score=51.09 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=53.4
Q ss_pred CceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCccccccccc
Q 039096 353 LKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQAAP 432 (554)
Q Consensus 353 L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~~~~ 432 (554)
|+.|-++++. ++.++.+ ++..+.|..|+.+ .| ...+ -...+..+.+|+.|.+.-|++.....-
T Consensus 145 Lkvli~sNNk---l~~lp~~-ig~~~tl~~ld~s---~n---ei~s-----lpsql~~l~slr~l~vrRn~l~~lp~E-- 207 (722)
T KOG0532|consen 145 LKVLIVSNNK---LTSLPEE-IGLLPTLAHLDVS---KN---EIQS-----LPSQLGYLTSLRDLNVRRNHLEDLPEE-- 207 (722)
T ss_pred ceeEEEecCc---cccCCcc-cccchhHHHhhhh---hh---hhhh-----chHHhhhHHHHHHHHHhhhhhhhCCHH--
Confidence 7777776544 5555444 5666777777776 44 1111 112444466666666664444322110
Q ss_pred ccCCCCchhhhHhhcccccceecccccCCCCCcCCcchhhhhHHHHHHHhccccceeeeccchhh
Q 039096 433 YKAADLSTWDRFVLNGIGNLILKELDYWPAKDPNASQRSLSRLAAALISNCITLRKVFVHCTARE 497 (554)
Q Consensus 433 ~~~~~L~~l~~~~l~~~~~l~L~~l~~~~~~~~~~~~~~~~lp~~~~l~~~~~L~~L~i~~~~~~ 497 (554)
+..|.|-.++.... .-..+|.. +.+++.|+.|-+.+..-.
T Consensus 208 ----------------l~~LpLi~lDfScN-------kis~iPv~--fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 208 ----------------LCSLPLIRLDFSCN-------KISYLPVD--FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ----------------HhCCceeeeecccC-------ceeecchh--hhhhhhheeeeeccCCCC
Confidence 01112222322221 11234767 888899999988865543
No 74
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.26 E-value=3.5 Score=24.11 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=18.5
Q ss_pred CCccEEEcCCCCCCCCCCHHHHHHHHH
Q 039096 108 AILTCLNLLKTSFSEDYRPQEIIEIIA 134 (554)
Q Consensus 108 ~~L~~L~L~~~~~~~~i~~~~l~~l~~ 134 (554)
++|++|+|++|. +++++...+..
T Consensus 2 ~~L~~LdL~~N~----i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNK----LGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCC----CCHHHHHHHHH
Confidence 478999999887 88888877744
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=75.29 E-value=2.9 Score=34.79 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=10.8
Q ss_pred cCCCCceEEeecccCCccCccccccCcCCCCCCEEEE
Q 039096 349 RWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRI 385 (554)
Q Consensus 349 ~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l 385 (554)
.+++|+.+.+.. . ++.+....+.++ .|+.+.+
T Consensus 79 ~~~~l~~i~~~~--~--~~~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 79 NCTNLKNIDIPS--N--ITEIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp T-TTECEEEETT--T---BEEHTTTTTT--T--EEE-
T ss_pred ccccccccccCc--c--ccEEchhhhcCC-CceEEEE
Confidence 345555554421 1 233333334444 4554444
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=73.50 E-value=2.5 Score=21.50 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=4.9
Q ss_pred CCceEEeeccc
Q 039096 352 SLKELSFWIEV 362 (554)
Q Consensus 352 ~L~~L~l~~c~ 362 (554)
+|+.|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 45555555544
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=70.82 E-value=8.9 Score=31.76 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=17.3
Q ss_pred hcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEe
Q 039096 348 TRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIK 386 (554)
Q Consensus 348 ~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~ 386 (554)
..+++|+.+.+.. + ++.+....+.+|++|+.+.+.
T Consensus 32 ~~~~~l~~i~~~~--~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 32 SNCTSLKSINFPN--N--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TT-TT-SEEEESS--T--TSCE-TTTTTT-TT-EEEEET
T ss_pred ccccccccccccc--c--ccccceeeeeccccccccccc
Confidence 5566677666632 2 445555555666667777764
No 78
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=69.96 E-value=2.7 Score=22.97 Aligned_cols=11 Identities=18% Similarity=0.026 Sum_probs=6.3
Q ss_pred CCceEEeeccc
Q 039096 352 SLKELSFWIEV 362 (554)
Q Consensus 352 ~L~~L~l~~c~ 362 (554)
+|++|++++|.
T Consensus 1 ~L~~Ldls~n~ 11 (22)
T PF00560_consen 1 NLEYLDLSGNN 11 (22)
T ss_dssp TESEEEETSSE
T ss_pred CccEEECCCCc
Confidence 35666666553
No 79
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=69.56 E-value=1.2 Score=37.53 Aligned_cols=81 Identities=11% Similarity=0.183 Sum_probs=46.1
Q ss_pred CccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCcc
Q 039096 290 TLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPL 369 (554)
Q Consensus 290 ~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l 369 (554)
.+..+++++|.... .............|+..+++.+.+..-.... ...++-.+.|++.++. +.++
T Consensus 28 E~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~fp~kf-----------t~kf~t~t~lNl~~ne---isdv 92 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKKFPKKF-----------TIKFPTATTLNLANNE---ISDV 92 (177)
T ss_pred HhhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhhCCHHH-----------hhccchhhhhhcchhh---hhhc
Confidence 56667777776442 2222222233445666666555332222222 1456677777776554 6777
Q ss_pred ccccCcCCCCCCEEEEe
Q 039096 370 PVAGLDECPILENIRIK 386 (554)
Q Consensus 370 ~~~~l~~~~~L~~L~l~ 386 (554)
+.+ +..+|.|+.|+++
T Consensus 93 PeE-~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 93 PEE-LAAMPALRSLNLR 108 (177)
T ss_pred hHH-HhhhHHhhhcccc
Confidence 766 7778888888887
No 80
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=66.99 E-value=0.61 Score=48.45 Aligned_cols=102 Identities=15% Similarity=0.069 Sum_probs=45.2
Q ss_pred cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCC
Q 039096 237 WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRD 316 (554)
Q Consensus 237 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~ 316 (554)
-|+.|.+++|. ++.. ...+. ..+.|..|+.+.|...+ ....+.. + .+|+.|.+..+........+ . +-
T Consensus 144 pLkvli~sNNk-l~~l-p~~ig-~~~tl~~ld~s~nei~s--lpsql~~-l-~slr~l~vrRn~l~~lp~El----~-~L 211 (722)
T KOG0532|consen 144 PLKVLIVSNNK-LTSL-PEEIG-LLPTLAHLDVSKNEIQS--LPSQLGY-L-TSLRDLNVRRNHLEDLPEEL----C-SL 211 (722)
T ss_pred cceeEEEecCc-cccC-Ccccc-cchhHHHhhhhhhhhhh--chHHhhh-H-HHHHHHHHhhhhhhhCCHHH----h-CC
Confidence 35566666665 3321 12222 35566666666665221 1111111 1 34555554443322111111 1 22
Q ss_pred CccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeeccc
Q 039096 317 RIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEV 362 (554)
Q Consensus 317 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 362 (554)
.|..||++|+.+...... + ..+..|++|-|.++|
T Consensus 212 pLi~lDfScNkis~iPv~-f-----------r~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 212 PLIRLDFSCNKISYLPVD-F-----------RKMRHLQVLQLENNP 245 (722)
T ss_pred ceeeeecccCceeecchh-h-----------hhhhhheeeeeccCC
Confidence 266666666654433322 2 456666666666555
No 81
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=65.93 E-value=2.8 Score=35.47 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=36.9
Q ss_pred ccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCC
Q 039096 238 LESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENL 302 (554)
Q Consensus 238 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~ 302 (554)
|+..++++|. +.+. ...+...+|.++.|++.+|. +.+.... ++. + +.|+.|++..++..
T Consensus 55 l~~i~ls~N~-fk~f-p~kft~kf~t~t~lNl~~ne-isdvPeE-~Aa-m-~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 55 LTKISLSDNG-FKKF-PKKFTIKFPTATTLNLANNE-ISDVPEE-LAA-M-PALRSLNLRFNPLN 113 (177)
T ss_pred EEEEecccch-hhhC-CHHHhhccchhhhhhcchhh-hhhchHH-Hhh-h-HHhhhcccccCccc
Confidence 3356666665 2322 23455556778888888877 6654433 333 3 78888888887755
No 82
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=65.71 E-value=1.3 Score=45.88 Aligned_cols=103 Identities=19% Similarity=0.246 Sum_probs=58.6
Q ss_pred CCCCCcEEEecCCCCCCCchhhHHH-HHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCC
Q 039096 194 GLPLLEELALDVGKNVRDSGSASEA-LKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGC 272 (554)
Q Consensus 194 ~~~~L~~L~L~~c~~l~~~~~~l~~-l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c 272 (554)
.+.+|+.|++.+ +.+ .. +.. + ..+++|+ +|+++++. |++. ..+.. ++.|+.|++.+|
T Consensus 93 ~~~~l~~l~l~~-n~i--~~--i~~~l-~~~~~L~------------~L~ls~N~-I~~i--~~l~~-l~~L~~L~l~~N 150 (414)
T KOG0531|consen 93 KLKSLEALDLYD-NKI--EK--IENLL-SSLVNLQ------------VLDLSFNK-ITKL--EGLST-LTLLKELNLSGN 150 (414)
T ss_pred cccceeeeeccc-cch--hh--cccch-hhhhcch------------heeccccc-cccc--cchhh-ccchhhheeccC
Confidence 567888888865 445 22 334 3 4455544 56666665 4442 12222 566889999988
Q ss_pred CCCCH-HHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeee
Q 039096 273 KNITV-DGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVW 327 (554)
Q Consensus 273 ~~i~~-~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 327 (554)
. +++ .++.. + +.|+.++++++... ...... ...+.+++.+.++.+.
T Consensus 151 ~-i~~~~~~~~----l-~~L~~l~l~~n~i~-~ie~~~--~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 151 L-ISDISGLES----L-KSLKLLDLSYNRIV-DIENDE--LSELISLEELDLGGNS 197 (414)
T ss_pred c-chhccCCcc----c-hhhhcccCCcchhh-hhhhhh--hhhccchHHHhccCCc
Confidence 8 443 22222 2 67888888877544 221210 2346778888886554
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.02 E-value=6.4 Score=41.04 Aligned_cols=72 Identities=19% Similarity=0.104 Sum_probs=41.5
Q ss_pred CcccceeecccccccCcccHHHHHhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCH
Q 039096 52 DPRLLADLLQMSFLCFGAEFVPLLKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRP 126 (554)
Q Consensus 52 ~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~ 126 (554)
.+.+..++|++...+.-..+..+....|+|+.|+|+++..+....+ .+.++ ....|++|.+.+|..|+.+.+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~--k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKL--KGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhh--cCCCHHHeeecCCccccchhh
Confidence 3444445555444444445555666788999999988733333222 12222 123588999998887765443
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.23 E-value=12 Score=39.20 Aligned_cols=80 Identities=16% Similarity=0.124 Sum_probs=39.5
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCC-C-CHHHHHHHHHHhcCCccEEEEeccCCCChh----HHHHHHhh
Q 039096 240 SLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKN-I-TVDGLRTLASLLRETLVVIKIYCCENLGAV----ASCKALKP 313 (554)
Q Consensus 240 ~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~-i-~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~----~~l~~l~~ 313 (554)
.+.+++|.-..-..+.++.+..|+|+.|+|++|.. + ++..+..+. . ..|++|.+.+++..++. +-+.++..
T Consensus 222 sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~--l~Leel~l~GNPlc~tf~~~s~yv~~i~~ 298 (585)
T KOG3763|consen 222 SLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-G--LPLEELVLEGNPLCTTFSDRSEYVSAIRE 298 (585)
T ss_pred eeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-C--CCHHHeeecCCccccchhhhHHHHHHHHH
Confidence 44455554222334455666667777777777622 1 112222221 1 45677777776644322 22333444
Q ss_pred cCCCccEEE
Q 039096 314 IRDRIQKLH 322 (554)
Q Consensus 314 ~~~~L~~L~ 322 (554)
..|+|..||
T Consensus 299 ~FPKL~~LD 307 (585)
T KOG3763|consen 299 LFPKLLRLD 307 (585)
T ss_pred hcchheeec
Confidence 456665554
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=29.82 E-value=36 Score=19.11 Aligned_cols=12 Identities=25% Similarity=0.290 Sum_probs=6.6
Q ss_pred CCCceEEeeccc
Q 039096 351 KSLKELSFWIEV 362 (554)
Q Consensus 351 ~~L~~L~l~~c~ 362 (554)
++|++|+++++.
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00370 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 456666665443
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=29.82 E-value=36 Score=19.11 Aligned_cols=12 Identities=25% Similarity=0.290 Sum_probs=6.6
Q ss_pred CCCceEEeeccc
Q 039096 351 KSLKELSFWIEV 362 (554)
Q Consensus 351 ~~L~~L~l~~c~ 362 (554)
++|++|+++++.
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00369 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 456666665443
No 87
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=22.06 E-value=1.5e+02 Score=29.24 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=60.8
Q ss_pred CHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhc---CCCCcEeecccccCcccEEEecCCC--CCCHHHHHHHH
Q 039096 184 SEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSK---CVNLKGLKLGQLHSWLESLSIKNCG--DLSDMSLVAIG 258 (554)
Q Consensus 184 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~---~~~L~~L~l~~~~~~L~~L~l~~~~--~l~~~~l~~l~ 258 (554)
.+..+..+-..=+.+++++|+...++.... +..+... -...+. ..+.+.. ......+....
T Consensus 186 ~e~~leri~~nd~~l~evnlnn~~~ip~e~--lk~~~eal~~nt~vk~------------Fsla~tr~~d~vA~a~a~ml 251 (353)
T KOG3735|consen 186 VESSLERIKENDTGLTEVNLNNIRRIPIET--LKQFSEALKNNTHVKK------------FSLANTRSSDPVAFAIAEML 251 (353)
T ss_pred HHHHHHHHhcCCCCceeeeccccccCCHHH--HHHHHHHHhcCchhhh------------hhhhcccCCchhHHHHHHHH
Confidence 345566665566899999997766663332 3333332 222332 2332222 22333445555
Q ss_pred hcCCCCcEEEecCCCCCCHHHHHHHHHHhc--CCccEEEEec
Q 039096 259 RGCSKLVKFEVEGCKNITVDGLRTLASLLR--ETLVVIKIYC 298 (554)
Q Consensus 259 ~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~--~~L~~L~l~~ 298 (554)
..++.|++|++.++. |+..|+..+...+. .+|.++.+.+
T Consensus 252 ~~n~sl~slnvesnF-Itg~gi~a~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 252 KENKSLTSLNVESNF-ITGLGIMALLRALQSNKSLTELKNDN 292 (353)
T ss_pred hhcchhhheeccccc-cccHHHHHHHHHHhccchhhHhhhhh
Confidence 668999999999998 99999988876552 4566666544
Done!