Query 039096
Match_columns 554
No_of_seqs 374 out of 3382
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 10:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.9 9.7E-27 3.3E-31 251.3 21.3 280 191-520 238-547 (592)
2 2p1m_B Transport inhibitor res 99.9 1.8E-26 6.2E-31 249.2 20.9 369 20-429 100-523 (594)
3 2p1m_B Transport inhibitor res 99.9 2.8E-25 9.4E-30 239.9 27.1 420 4-522 44-542 (594)
4 3ogk_B Coronatine-insensitive 99.9 2.1E-24 7.3E-29 232.9 18.0 394 5-431 75-532 (592)
5 1z7x_W Ribonuclease inhibitor; 99.9 2.8E-22 9.5E-27 209.5 21.9 220 24-299 2-237 (461)
6 3rgz_A Protein brassinosteroid 99.9 1.3E-25 4.6E-30 249.1 -4.1 438 5-523 52-550 (768)
7 3rgz_A Protein brassinosteroid 99.9 3.6E-25 1.2E-29 245.7 -1.9 365 6-427 154-553 (768)
8 1z7x_W Ribonuclease inhibitor; 99.9 7.1E-22 2.4E-26 206.4 22.3 274 4-333 4-301 (461)
9 3t6q_A CD180 antigen; protein- 99.9 1.1E-23 3.8E-28 228.0 2.8 100 6-119 36-140 (606)
10 3vq2_A TLR4, TOLL-like recepto 99.9 9.5E-23 3.2E-27 220.6 6.4 255 221-523 282-557 (606)
11 3vq2_A TLR4, TOLL-like recepto 99.8 1.4E-21 4.7E-26 211.5 10.3 413 16-524 22-534 (606)
12 3t6q_A CD180 antigen; protein- 99.8 3.9E-22 1.3E-26 215.8 5.9 430 5-494 59-557 (606)
13 3v47_A TOLL-like receptor 5B a 99.8 9.1E-21 3.1E-25 197.6 12.5 366 16-495 21-406 (455)
14 2z81_A CD282 antigen, TOLL-lik 99.8 5E-21 1.7E-25 204.6 9.3 92 16-119 16-109 (549)
15 1ziw_A TOLL-like receptor 3; i 99.8 6E-21 2E-25 209.3 7.5 435 16-524 15-549 (680)
16 1ziw_A TOLL-like receptor 3; i 99.8 8.4E-21 2.9E-25 208.2 8.3 104 6-120 76-183 (680)
17 2z63_A TOLL-like receptor 4, v 99.8 7.1E-21 2.4E-25 204.3 4.8 92 16-119 18-111 (570)
18 2z81_A CD282 antigen, TOLL-lik 99.8 4.1E-19 1.4E-23 189.7 17.8 103 5-119 28-134 (549)
19 4eco_A Uncharacterized protein 99.8 1.8E-20 6.3E-25 203.2 6.7 351 71-523 198-599 (636)
20 2z7x_B TOLL-like receptor 1, v 99.8 1E-19 3.4E-24 193.1 12.1 97 6-119 3-101 (520)
21 3j0a_A TOLL-like receptor 5; m 99.8 1.3E-20 4.3E-25 211.3 5.2 299 16-386 15-370 (844)
22 4ecn_A Leucine-rich repeat pro 99.8 8.4E-20 2.9E-24 202.1 9.6 351 71-523 440-839 (876)
23 1o6v_A Internalin A; bacterial 99.8 1.2E-18 4E-23 182.2 16.3 309 6-428 49-369 (466)
24 2ast_B S-phase kinase-associat 99.8 6.7E-18 2.3E-22 168.5 19.5 271 71-431 39-312 (336)
25 4fmz_A Internalin; leucine ric 99.8 1.6E-17 5.5E-22 166.6 20.6 286 23-428 42-327 (347)
26 1o6v_A Internalin A; bacterial 99.8 8.6E-18 2.9E-22 175.6 19.3 144 23-234 44-187 (466)
27 4eco_A Uncharacterized protein 99.8 4.3E-19 1.5E-23 192.5 7.4 299 51-420 204-544 (636)
28 2z63_A TOLL-like receptor 4, v 99.7 1.9E-19 6.5E-24 193.2 2.8 241 221-524 279-531 (570)
29 2z7x_B TOLL-like receptor 1, v 99.7 1.8E-18 6.2E-23 183.4 9.9 103 4-119 22-126 (520)
30 4fmz_A Internalin; leucine ric 99.7 4.9E-17 1.7E-21 163.0 19.6 300 5-425 46-346 (347)
31 4ecn_A Leucine-rich repeat pro 99.7 1.3E-18 4.5E-23 192.6 8.7 298 51-420 446-784 (876)
32 3j0a_A TOLL-like receptor 5; m 99.7 1.1E-18 3.9E-23 195.5 6.6 219 196-439 266-507 (844)
33 3v47_A TOLL-like receptor 5B a 99.7 2.7E-17 9.4E-22 171.2 15.6 340 5-429 32-388 (455)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.1E-17 3.9E-22 179.0 12.3 121 6-161 34-156 (562)
35 2ast_B S-phase kinase-associat 99.7 3.7E-17 1.3E-21 163.1 13.5 198 77-336 91-291 (336)
36 2id5_A Lingo-1, leucine rich r 99.7 4.8E-18 1.6E-22 178.1 5.4 311 16-426 22-334 (477)
37 2ca6_A RAN GTPase-activating p 99.7 2.4E-16 8.2E-21 160.4 13.5 264 73-386 26-311 (386)
38 2ca6_A RAN GTPase-activating p 99.7 1.6E-15 5.5E-20 154.3 19.2 114 240-362 191-314 (386)
39 2id5_A Lingo-1, leucine rich r 99.7 6.5E-17 2.2E-21 169.5 7.1 292 5-386 34-328 (477)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 8.2E-16 2.8E-20 164.5 15.0 102 5-119 54-157 (562)
41 4g8a_A TOLL-like receptor 4; l 99.6 2.4E-16 8.2E-21 171.0 9.9 147 13-211 38-187 (635)
42 3o6n_A APL1; leucine-rich repe 99.6 1.4E-16 4.6E-21 162.5 5.7 306 23-429 43-356 (390)
43 3o6n_A APL1; leucine-rich repe 99.6 1.7E-16 5.8E-21 161.8 5.6 282 51-428 43-334 (390)
44 4g8a_A TOLL-like receptor 4; l 99.6 6.6E-17 2.3E-21 175.5 0.9 101 5-119 54-159 (635)
45 3oja_B Anopheles plasmodium-re 99.6 3.9E-16 1.3E-20 168.1 5.2 305 23-428 49-361 (597)
46 3goz_A Leucine-rich repeat-con 99.6 1.5E-14 5.1E-19 145.8 14.5 148 262-427 138-299 (362)
47 3oja_B Anopheles plasmodium-re 99.6 9.4E-16 3.2E-20 165.1 6.0 282 51-428 49-340 (597)
48 3bz5_A Internalin-J, INLJ; leu 99.6 5.8E-15 2E-19 153.2 9.3 93 261-385 169-261 (457)
49 1xku_A Decorin; proteoglycan, 99.5 5.1E-15 1.7E-19 147.2 6.7 291 26-422 32-329 (330)
50 2z80_A TOLL-like receptor 2, v 99.5 5.9E-15 2E-19 148.2 7.2 238 75-386 72-309 (353)
51 3goz_A Leucine-rich repeat-con 99.5 7.8E-14 2.7E-18 140.4 14.2 255 73-386 16-292 (362)
52 1jl5_A Outer protein YOPM; leu 99.5 4E-14 1.4E-18 146.7 11.3 91 6-119 74-164 (454)
53 1jl5_A Outer protein YOPM; leu 99.5 2.8E-14 9.5E-19 148.0 10.0 270 26-426 72-351 (454)
54 3bz5_A Internalin-J, INLJ; leu 99.5 4E-14 1.4E-18 146.9 9.2 298 23-426 40-353 (457)
55 1xku_A Decorin; proteoglycan, 99.5 2.2E-14 7.4E-19 142.6 6.6 221 150-430 51-281 (330)
56 2ft3_A Biglycan; proteoglycan, 99.5 3.9E-15 1.3E-19 148.1 0.1 288 26-420 34-328 (332)
57 2z80_A TOLL-like receptor 2, v 99.4 5.1E-14 1.8E-18 141.3 3.3 263 196-525 52-315 (353)
58 2ft3_A Biglycan; proteoglycan, 99.4 2.1E-14 7.2E-19 142.9 -0.9 222 150-431 53-283 (332)
59 3o53_A Protein LRIM1, AGAP0063 99.4 2E-14 7E-19 141.9 -2.6 248 75-427 30-278 (317)
60 1wwl_A Monocyte differentiatio 99.3 8.7E-14 3E-18 137.1 0.3 265 77-427 41-311 (312)
61 1ogq_A PGIP-2, polygalacturona 99.3 4.5E-14 1.5E-18 139.2 -2.0 201 192-428 72-284 (313)
62 4fcg_A Uncharacterized protein 99.3 1.2E-13 4E-18 137.1 0.8 231 77-420 79-309 (328)
63 3g06_A SSPH2 (leucine-rich rep 99.3 1.4E-11 4.7E-16 132.0 16.5 261 25-428 40-300 (622)
64 3g06_A SSPH2 (leucine-rich rep 99.3 1.8E-12 6.2E-17 138.8 7.3 250 5-386 42-292 (622)
65 2z66_A Variable lymphocyte rec 99.3 1.4E-13 4.9E-18 135.1 -1.6 215 150-431 27-242 (306)
66 4glp_A Monocyte differentiatio 99.3 9.9E-13 3.4E-17 129.4 4.3 239 109-427 65-309 (310)
67 3zyj_A Leucine-rich repeat-con 99.3 5.4E-13 1.9E-17 138.0 2.5 195 193-424 85-291 (440)
68 3zyi_A Leucine-rich repeat-con 99.3 6.5E-13 2.2E-17 137.9 2.6 217 150-424 74-302 (452)
69 1ozn_A Reticulon 4 receptor; N 99.3 6.3E-13 2.1E-17 129.1 1.2 154 196-386 32-185 (285)
70 3oja_A Leucine-rich immune mol 99.2 4.2E-13 1.4E-17 140.4 -1.1 249 67-420 18-270 (487)
71 1ozn_A Reticulon 4 receptor; N 99.2 3.2E-12 1.1E-16 124.1 4.8 187 193-426 53-239 (285)
72 3zyi_A Leucine-rich repeat-con 99.2 2E-12 6.8E-17 134.3 2.9 206 196-438 75-292 (452)
73 1ogq_A PGIP-2, polygalacturona 99.2 2.7E-13 9.2E-18 133.6 -3.6 249 196-522 50-302 (313)
74 3o53_A Protein LRIM1, AGAP0063 99.2 5.3E-12 1.8E-16 124.5 5.6 46 186-235 24-69 (317)
75 2z66_A Variable lymphocyte rec 99.2 1.5E-12 5.3E-17 127.7 1.5 201 196-444 28-231 (306)
76 3zyj_A Leucine-rich repeat-con 99.2 2E-12 6.7E-17 133.8 2.0 208 196-440 64-283 (440)
77 4fcg_A Uncharacterized protein 99.2 7.8E-12 2.7E-16 123.9 6.1 131 260-420 125-261 (328)
78 4glp_A Monocyte differentiatio 99.2 3E-11 1E-15 118.7 8.8 181 6-234 67-261 (310)
79 3e4g_A ATP synthase subunit S, 99.2 3.6E-11 1.2E-15 105.7 8.3 106 196-319 61-170 (176)
80 1wwl_A Monocyte differentiatio 99.2 2.7E-11 9.3E-16 119.1 7.9 206 23-300 93-307 (312)
81 3e4g_A ATP synthase subunit S, 99.2 2.2E-11 7.4E-16 107.0 6.2 105 151-292 61-170 (176)
82 3un9_A NLR family member X1; l 99.2 2.6E-10 8.8E-15 114.7 14.2 177 108-336 72-259 (372)
83 3oja_A Leucine-rich immune mol 99.1 1.1E-11 3.8E-16 129.6 3.0 158 194-386 32-199 (487)
84 3un9_A NLR family member X1; l 99.1 1.5E-10 5.2E-15 116.3 11.1 167 78-300 71-250 (372)
85 1h6u_A Internalin H; cell adhe 99.1 9.8E-11 3.3E-15 114.9 8.5 184 195-428 40-233 (308)
86 3rfs_A Internalin B, repeat mo 99.1 1.4E-11 4.9E-16 118.5 2.1 193 194-445 39-231 (272)
87 2z62_A TOLL-like receptor 4, v 99.1 4.7E-11 1.6E-15 115.2 4.6 215 16-300 18-235 (276)
88 1h6u_A Internalin H; cell adhe 99.1 5.1E-10 1.7E-14 109.7 10.5 177 149-386 39-225 (308)
89 3rfs_A Internalin B, repeat mo 99.0 2.3E-10 8E-15 110.0 4.9 173 261-523 62-234 (272)
90 2z62_A TOLL-like receptor 4, v 99.0 1E-10 3.6E-15 112.7 2.3 194 196-425 28-237 (276)
91 2o6q_A Variable lymphocyte rec 98.9 2.9E-10 1E-14 109.2 3.3 156 238-425 39-194 (270)
92 2o6q_A Variable lymphocyte rec 98.9 3.2E-10 1.1E-14 109.0 2.1 181 196-424 37-217 (270)
93 1h6t_A Internalin B; cell adhe 98.9 1.4E-09 4.9E-14 105.6 6.0 175 194-430 44-218 (291)
94 4ezg_A Putative uncharacterize 98.9 1.8E-09 6.3E-14 98.3 5.8 130 261-425 65-194 (197)
95 2xwt_C Thyrotropin receptor; s 98.8 2.1E-10 7.3E-15 108.0 -1.1 10 484-493 205-214 (239)
96 1p9a_G Platelet glycoprotein I 98.8 8.5E-10 2.9E-14 107.1 3.1 181 193-427 7-187 (290)
97 1p9a_G Platelet glycoprotein I 98.8 3.5E-09 1.2E-13 102.8 5.9 178 196-425 31-208 (290)
98 1m9s_A Internalin B; cell inva 98.8 2.2E-09 7.5E-14 114.7 4.7 173 194-428 41-213 (605)
99 4ezg_A Putative uncharacterize 98.8 5.4E-09 1.8E-13 95.2 6.0 133 261-428 43-175 (197)
100 3m19_A Variable lymphocyte rec 98.8 2E-09 6.8E-14 102.1 2.8 89 314-426 105-193 (251)
101 2xwt_C Thyrotropin receptor; s 98.8 8.6E-10 2.9E-14 103.8 0.2 185 196-428 31-221 (239)
102 1io0_A Tropomodulin; LRR prote 98.7 1.6E-07 5.5E-12 84.3 13.5 134 97-279 25-167 (185)
103 1io0_A Tropomodulin; LRR prote 98.7 1.5E-07 5.1E-12 84.5 12.0 134 185-332 25-167 (185)
104 1m9s_A Internalin B; cell inva 98.7 1.2E-08 4.1E-13 109.0 5.2 165 149-386 41-205 (605)
105 3m19_A Variable lymphocyte rec 98.7 2.2E-08 7.4E-13 94.9 6.3 105 262-386 35-139 (251)
106 1h6t_A Internalin B; cell adhe 98.7 4.1E-08 1.4E-12 95.2 8.4 147 238-428 48-194 (291)
107 3sb4_A Hypothetical leucine ri 98.6 4.4E-08 1.5E-12 96.8 7.3 122 289-439 202-324 (329)
108 2ell_A Acidic leucine-rich nuc 98.6 2.9E-08 1E-12 87.7 4.9 135 262-424 24-159 (168)
109 2ra8_A Uncharacterized protein 98.5 6.9E-07 2.4E-11 88.9 13.3 184 75-325 135-339 (362)
110 2o6s_A Variable lymphocyte rec 98.5 1.1E-08 3.8E-13 93.9 0.3 85 314-429 98-182 (208)
111 1xeu_A Internalin C; cellular 98.5 3.8E-08 1.3E-12 93.9 3.6 126 261-427 62-187 (263)
112 2ra8_A Uncharacterized protein 98.5 1.4E-07 4.8E-12 93.9 7.0 177 193-410 136-329 (362)
113 4ay9_X Follicle-stimulating ho 98.5 4.8E-10 1.7E-14 112.0 -11.5 224 108-420 30-254 (350)
114 2je0_A Acidic leucine-rich nuc 98.5 3.7E-07 1.3E-11 78.7 8.0 109 77-232 40-148 (149)
115 2je0_A Acidic leucine-rich nuc 98.4 3.2E-08 1.1E-12 85.5 0.7 13 261-273 41-53 (149)
116 2ell_A Acidic leucine-rich nuc 98.4 1.2E-06 4.2E-11 77.0 10.0 86 315-426 23-109 (168)
117 1xeu_A Internalin C; cellular 98.4 1.5E-07 5E-12 89.8 3.6 142 194-386 39-180 (263)
118 2v9t_B SLIT homolog 2 protein 98.4 4.3E-07 1.5E-11 84.0 6.4 110 289-425 32-141 (220)
119 2o6s_A Variable lymphocyte rec 98.4 1.1E-06 3.7E-11 80.4 9.0 35 480-524 144-178 (208)
120 3cvr_A Invasion plasmid antige 98.3 4.1E-06 1.4E-10 88.5 13.4 73 25-119 59-131 (571)
121 1dce_A Protein (RAB geranylger 98.3 1.8E-08 6.1E-13 106.9 -5.8 126 262-419 441-567 (567)
122 3sb4_A Hypothetical leucine ri 98.3 4.1E-07 1.4E-11 89.8 4.2 274 78-418 24-327 (329)
123 2v70_A SLIT-2, SLIT homolog 2 98.3 3.1E-07 1E-11 85.0 2.8 88 314-425 79-166 (220)
124 3e6j_A Variable lymphocyte rec 98.2 1.6E-06 5.6E-11 80.6 7.5 109 289-425 40-148 (229)
125 3cvr_A Invasion plasmid antige 98.2 1E-06 3.4E-11 93.2 6.7 175 195-429 58-247 (571)
126 1a9n_A U2A', U2A'; complex (nu 98.2 5E-07 1.7E-11 80.3 3.5 134 261-424 18-152 (176)
127 1pgv_A TMD-1, tropomodulin TMD 98.2 1E-05 3.4E-10 72.3 11.8 131 185-328 30-169 (197)
128 2v70_A SLIT-2, SLIT homolog 2 98.2 1.3E-06 4.5E-11 80.7 6.0 82 289-386 32-113 (220)
129 2xot_A Amphoterin-induced prot 98.2 1.4E-07 4.7E-12 94.5 -0.8 88 314-425 110-202 (361)
130 2v9t_B SLIT homolog 2 protein 98.2 2.4E-06 8.2E-11 78.9 6.5 135 261-425 31-165 (220)
131 3e6j_A Variable lymphocyte rec 98.1 4E-06 1.4E-10 77.9 8.1 134 261-425 39-172 (229)
132 1dce_A Protein (RAB geranylger 98.1 2.6E-07 9E-12 98.0 -0.6 107 289-427 441-548 (567)
133 4ay9_X Follicle-stimulating ho 98.1 1.4E-06 4.9E-11 86.6 4.7 162 237-428 31-194 (350)
134 2xot_A Amphoterin-induced prot 98.0 4.2E-06 1.4E-10 83.6 6.0 133 265-429 21-153 (361)
135 1ds9_A Outer arm dynein; leuci 98.0 1.9E-06 6.6E-11 78.1 2.8 107 74-233 43-149 (198)
136 1a9n_A U2A', U2A'; complex (nu 98.0 3.4E-06 1.2E-10 74.8 3.9 110 289-427 19-128 (176)
137 1pgv_A TMD-1, tropomodulin TMD 97.9 5.4E-05 1.8E-09 67.6 9.9 121 144-299 34-167 (197)
138 2wfh_A SLIT homolog 2 protein 97.8 2.3E-05 7.8E-10 70.6 6.7 87 314-424 52-138 (193)
139 1ds9_A Outer arm dynein; leuci 97.8 2E-06 7E-11 77.9 -1.1 11 262-272 70-80 (198)
140 1w8a_A SLIT protein; signaling 97.8 2.7E-05 9.1E-10 70.1 5.6 88 314-425 52-139 (192)
141 2o6r_A Variable lymphocyte rec 97.7 5.1E-05 1.7E-09 67.1 7.3 87 315-425 51-137 (177)
142 4fs7_A Uncharacterized protein 97.7 3.5E-06 1.2E-10 85.3 -1.7 34 348-385 294-327 (394)
143 2o6r_A Variable lymphocyte rec 97.6 0.00013 4.3E-09 64.6 8.0 91 315-429 27-117 (177)
144 2wfh_A SLIT homolog 2 protein 97.6 0.00012 4.2E-09 65.7 7.9 91 316-431 31-121 (193)
145 1w8a_A SLIT protein; signaling 97.6 0.00012 4E-09 65.8 6.9 92 316-431 29-121 (192)
146 4fdw_A Leucine rich hypothetic 97.5 0.00015 5.1E-09 73.3 7.4 185 197-426 158-359 (401)
147 4fdw_A Leucine rich hypothetic 97.5 5.6E-05 1.9E-09 76.4 3.9 130 260-420 178-308 (401)
148 4b8c_D Glucose-repressible alc 97.5 5.2E-05 1.8E-09 82.9 3.9 104 259-386 221-324 (727)
149 4b8c_D Glucose-repressible alc 97.4 4E-05 1.4E-09 83.8 1.4 13 261-273 246-258 (727)
150 3g39_A Variable lymphocyte rec 97.3 0.00041 1.4E-08 60.8 7.3 86 316-425 30-115 (170)
151 4fs7_A Uncharacterized protein 97.3 0.00016 5.6E-09 72.9 5.2 56 22-87 68-125 (394)
152 3g39_A Variable lymphocyte rec 97.3 0.00026 9E-09 62.1 5.9 101 6-120 12-114 (170)
153 2r9u_A Variable lymphocyte rec 97.3 0.00046 1.6E-08 60.8 7.3 86 316-425 33-118 (174)
154 2r9u_A Variable lymphocyte rec 97.3 0.00034 1.2E-08 61.6 6.2 101 6-120 15-117 (174)
155 4gt6_A Cell surface protein; l 96.8 0.00044 1.5E-08 69.7 2.2 58 348-420 285-342 (394)
156 3rw6_A Nuclear RNA export fact 96.4 0.0071 2.4E-07 56.8 7.6 89 75-203 166-258 (267)
157 2ifg_A High affinity nerve gro 96.0 0.0094 3.2E-07 58.6 7.0 81 289-386 31-111 (347)
158 3rw6_A Nuclear RNA export fact 95.6 0.015 5.1E-07 54.6 6.0 85 192-295 166-257 (267)
159 2ifg_A High affinity nerve gro 94.9 0.038 1.3E-06 54.2 6.9 90 312-426 27-117 (347)
160 4gt6_A Cell surface protein; l 93.8 0.13 4.6E-06 51.3 8.1 58 348-420 262-319 (394)
161 4h09_A Hypothetical leucine ri 90.5 0.37 1.3E-05 47.6 6.5 64 348-426 237-300 (379)
162 4h09_A Hypothetical leucine ri 87.3 0.78 2.7E-05 45.2 6.2 81 314-420 261-341 (379)
163 3rfe_A Platelet glycoprotein I 69.9 4 0.00014 33.1 3.9 17 19-35 24-41 (130)
164 2lz0_A Uncharacterized protein 62.8 6.6 0.00023 30.2 3.7 35 348-386 17-51 (100)
165 3rfe_A Platelet glycoprotein I 46.9 11 0.00038 30.4 2.7 33 351-386 31-63 (130)
166 2lz0_A Uncharacterized protein 39.7 29 0.00099 26.5 3.9 44 366-420 8-51 (100)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=9.7e-27 Score=251.25 Aligned_cols=280 Identities=19% Similarity=0.125 Sum_probs=185.2
Q ss_pred HHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeeccccc-----------CcccEEEecCCCCCCHHHHHHHHh
Q 039096 191 LFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLH-----------SWLESLSIKNCGDLSDMSLVAIGR 259 (554)
Q Consensus 191 l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~-----------~~L~~L~l~~~~~l~~~~l~~l~~ 259 (554)
....+++|++|+++.+............+ ..+++|+.|.+.... .+|++|++++|. +++..+..+..
T Consensus 238 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~ 315 (592)
T 3ogk_B 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNL-VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQ 315 (592)
T ss_dssp HHHHCTTCCEEEECBCCCCTTCTTSSSCC-CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHT
T ss_pred HHhhhhHHHhhcccccccccchHHHHHHh-hccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHH
Confidence 34455666666665432211111101122 455666666665432 189999999998 89988888778
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEec----------cCCCChhHHHHHHhhcCCCccEEEeeeeecc
Q 039096 260 GCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYC----------CENLGAVASCKALKPIRDRIQKLHIDCVWDG 329 (554)
Q Consensus 260 ~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~----------c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 329 (554)
.+++|++|++.+ .+++.++..+...+ ++|++|++++ |..+ +..++..+...|++|++|++.++.++
T Consensus 316 ~~~~L~~L~L~~--~~~~~~l~~~~~~~-~~L~~L~L~~g~~~~~~~~~~~~~-~~~~~~~l~~~~~~L~~L~l~~~~l~ 391 (592)
T 3ogk_B 316 KCPNLEVLETRN--VIGDRGLEVLAQYC-KQLKRLRIERGADEQGMEDEEGLV-SQRGLIALAQGCQELEYMAVYVSDIT 391 (592)
T ss_dssp TCTTCCEEEEEG--GGHHHHHHHHHHHC-TTCCEEEEECCCCSSTTSSTTCCC-CHHHHHHHHHHCTTCSEEEEEESCCC
T ss_pred hCcCCCEEeccC--ccCHHHHHHHHHhC-CCCCEEEeecCccccccccccCcc-CHHHHHHHHhhCccCeEEEeecCCcc
Confidence 899999999993 37889999988888 8999999995 8777 45567777778999999999888877
Q ss_pred ccchhhhccCCccchhhhhcCCCCceEEeeccc-CCccCccccc-----cCcCCCCCCEEEEeeeCCCCCCCCCCccccc
Q 039096 330 IRSSEAKATGNTSTIFSKTRWKSLKELSFWIEV-GELLTPLPVA-----GLDECPILENIRIKMEGDTREKPLLRDDKAW 403 (554)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~~~~t~l~~~-----~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~ 403 (554)
...+..+ ...+++|++|++.+|. .+.+++.+.. .+.+|++|+.|+++ .|. +.++ +.
T Consensus 392 ~~~~~~l----------~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~---~~~--~~l~---~~ 453 (592)
T 3ogk_B 392 NESLESI----------GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY---LRQ--GGLT---DL 453 (592)
T ss_dssp HHHHHHH----------HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE---CCG--GGCC---HH
T ss_pred HHHHHHH----------HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe---cCC--CCcc---HH
Confidence 7777666 2569999999998543 2226654221 13679999999998 662 2456 77
Q ss_pred hhhhhcc-CCCccceeeecCCcccccccccccCCCCchhhhHhhcccccceecccccCCCCCcCCcchhhhhHHHHHHHh
Q 039096 404 GLSCLTR-YPRLSKLVLDFGDTDGHNQAAPYKAADLSTWDRFVLNGIGNLILKELDYWPAKDPNASQRSLSRLAAALISN 482 (554)
Q Consensus 404 ~l~~l~~-~~~L~~L~l~c~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~l~L~~l~~~~~~~~~~~~~~~~lp~~~~l~~ 482 (554)
++..++. +++|+.|+++++.+++.++... ..++.+ |+.++..... +.. ..++.. .+.
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-------------~~~~~~--L~~L~l~~n~---l~~--~~~~~~--~~~ 511 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEF-------------SRGCPN--LQKLEMRGCC---FSE--RAIAAA--VTK 511 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHH-------------HTCCTT--CCEEEEESCC---CBH--HHHHHH--HHH
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHH-------------HhcCcc--cCeeeccCCC---CcH--HHHHHH--HHh
Confidence 7777777 8999999999777876554331 111122 3333322221 111 112222 678
Q ss_pred ccccceeeeccchh--hHHHHhhhcCCCCCcccccccccc
Q 039096 483 CITLRKVFVHCTAR--EHFMSMLISPTPNPKKARDAQIKL 520 (554)
Q Consensus 483 ~~~L~~L~i~~~~~--~~~~~~~~~~~~~~~~L~~l~l~~ 520 (554)
+++|+.|+++++.. ..+..+... +|. ++...+..
T Consensus 512 l~~L~~L~ls~n~it~~~~~~l~~~-~p~---l~~~~~~~ 547 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASMTGQDLMQMA-RPY---WNIELIPS 547 (592)
T ss_dssp CSSCCEEEEESCBCCTTCTTGGGGC-CTT---EEEEEECC
T ss_pred cCccCeeECcCCcCCHHHHHHHHHh-CCC---cEEEEecC
Confidence 99999999995543 333444445 787 66555544
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.8e-26 Score=249.18 Aligned_cols=369 Identities=16% Similarity=0.144 Sum_probs=266.6
Q ss_pred hhhcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCCcEEEecCCCCCCCChhHH
Q 039096 20 VPLCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCLTSVDLSSFYHWTEDLPPV 99 (554)
Q Consensus 20 l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 99 (554)
+...+++|++|+++++ .+....+ ..+...+++|+.|++.++...+...+..++..|++|++|++++|. +++..+..
T Consensus 100 l~~~~~~L~~L~L~~~-~~~~~~~--~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~ 175 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRM-VVTDDCL--ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHW 175 (594)
T ss_dssp HHHHCTTCCEEEEESC-BCCHHHH--HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGG
T ss_pred HHHhCCCCCeEEeeCc-EEcHHHH--HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHH
Confidence 3457888999999887 4544443 333325789999999866555555677778899999999999984 55655666
Q ss_pred HhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhH----------HHHhccCCCCCEEEeccccc------
Q 039096 100 LKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWA----------VSIATNCPRLTLLHLAETST------ 163 (554)
Q Consensus 100 l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~----------~~~~~~~~~L~~L~l~~c~~------ 163 (554)
+..++..+++|++|++++|. ..+++..+..++.+|++|+.|. ..+...+++|++|++..|..
T Consensus 176 l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred HHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhh
Confidence 77777788999999999875 3588888998888899998887 24445789999998765421
Q ss_pred -------ccccCCCCCCCCCcc--ccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccc
Q 039096 164 -------LAAMRGDPDDDGFTA--EDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQL 234 (554)
Q Consensus 164 -------l~~~~~~~~~~g~~~--~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~ 234 (554)
+..+. .+.. ....+....+..+...+++|++|++++|. +++.+ +..+...+++|++|++.++
T Consensus 254 ~~~l~~~l~~~~------~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~--l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 254 YSGLSVALSGCK------ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYD--LVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHHHHHHTCT------TCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHH--HHHHHTTCTTCCEEEEEGG
T ss_pred HHHHHHHHhcCC------CcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHH--HHHHHhcCCCcCEEeCcCc
Confidence 00000 0000 00122333444444567899999998877 76655 4565578999999999876
Q ss_pred c------------CcccEEEec--------CCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEE
Q 039096 235 H------------SWLESLSIK--------NCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVI 294 (554)
Q Consensus 235 ~------------~~L~~L~l~--------~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L 294 (554)
. .+|+.|++. .|..+++.++..+..+|++|+.|.+.. ..+++.++..+...+ ++|++|
T Consensus 325 ~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~~~~~l~~~~-~~L~~L 402 (594)
T 2p1m_B 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNAALITIARNR-PNMTRF 402 (594)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHHHHHHHHHHC-TTCCEE
T ss_pred cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHHHHHHHHhhC-CCccee
Confidence 2 279999983 455689999999988899999996654 458999998888877 899999
Q ss_pred EEe-----ccCCCCh---hHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCcc
Q 039096 295 KIY-----CCENLGA---VASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELL 366 (554)
Q Consensus 295 ~l~-----~c~~~~~---~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~ 366 (554)
++. +|..++. ..++..+...|++|++|++.. .+++..+..+ ...+++|+.|++++|. +
T Consensus 403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l----------~~~~~~L~~L~L~~~~---i 468 (594)
T 2p1m_B 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI----------GTYAKKMEMLSVAFAG---D 468 (594)
T ss_dssp EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH----------HHHCTTCCEEEEESCC---S
T ss_pred EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH----------HHhchhccEeeccCCC---C
Confidence 999 6777742 456677777899999999955 5566666655 2458999999998876 5
Q ss_pred CccccccC-cCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhcc-CCCccceeeecCCcccccc
Q 039096 367 TPLPVAGL-DECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTR-YPRLSKLVLDFGDTDGHNQ 429 (554)
Q Consensus 367 t~l~~~~l-~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~-~~~L~~L~l~c~~~~~~~~ 429 (554)
++.....+ ..|++|++|+++ +| . ++ +.++..+.. +++|+.|+++.+.++..+.
T Consensus 469 ~~~~~~~l~~~~~~L~~L~L~---~n---~-~~---~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 523 (594)
T 2p1m_B 469 SDLGMHHVLSGCDSLRKLEIR---DC---P-FG---DKALLANASKLETMRSLWMSSCSVSFGAC 523 (594)
T ss_dssp SHHHHHHHHHHCTTCCEEEEE---SC---S-CC---HHHHHHTGGGGGGSSEEEEESSCCBHHHH
T ss_pred cHHHHHHHHhcCCCcCEEECc---CC---C-Cc---HHHHHHHHHhCCCCCEEeeeCCCCCHHHH
Confidence 55555444 679999999999 88 3 35 777766655 8999999999334455443
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=2.8e-25 Score=239.93 Aligned_cols=420 Identities=15% Similarity=0.154 Sum_probs=258.0
Q ss_pred ceeEEEEecCCC-chhchhhcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCCc
Q 039096 4 TRTSITLRGNAC-NLNIVPLCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCLT 82 (554)
Q Consensus 4 ~r~~L~l~~~~~-~l~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~ 82 (554)
.|+.++++++.. ....+...|++|+.|+++++..+....+..+.+. ......+..+...+++|+
T Consensus 44 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~---------------~~~~~~l~~l~~~~~~L~ 108 (594)
T 2p1m_B 44 CRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWG---------------GYVYPWIEAMSSSYTWLE 108 (594)
T ss_dssp HCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSC---------------CBCHHHHHHHHHHCTTCC
T ss_pred hceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhccccccccc---------------chhhHHHHHHHHhCCCCC
Confidence 467888877742 2344556899999999999843221111001110 000111222334455555
Q ss_pred EEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhH--------------HHHhc
Q 039096 83 SVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWA--------------VSIAT 148 (554)
Q Consensus 83 ~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~--------------~~~~~ 148 (554)
+|+|++|. +++..+..+. ..+++|++|++++|. .+++.++..++.+|++|++|. ..+..
T Consensus 109 ~L~L~~~~-~~~~~~~~l~---~~~~~L~~L~L~~~~---~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 109 EIRLKRMV-VTDDCLELIA---KSFKNFKVLVLSSCE---GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp EEEEESCB-CCHHHHHHHH---HHCTTCCEEEEESCE---EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred eEEeeCcE-EcHHHHHHHH---HhCCCCcEEeCCCcC---CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 55555542 2332222221 112355555555441 144444444444444444443 11223
Q ss_pred cCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcE
Q 039096 149 NCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKG 228 (554)
Q Consensus 149 ~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~ 228 (554)
.+++|++|++++|. ..++...+..+...+++|++|++++|..+++ +..+...+++|+.
T Consensus 182 ~~~~L~~L~l~~~~------------------~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~----l~~~~~~~~~L~~ 239 (594)
T 2p1m_B 182 TYTSLVSLNISCLA------------------SEVSFSALERLVTRCPNLKSLKLNRAVPLEK----LATLLQRAPQLEE 239 (594)
T ss_dssp TCCCCCEEECTTCC------------------SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH----HHHHHHHCTTCSE
T ss_pred cCCcCcEEEecccC------------------CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH----HHHHHhcCCcceE
Confidence 56677777776541 1355666666666677777777777644322 2233355556665
Q ss_pred eecccc------------------------------------------cCcccEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 039096 229 LKLGQL------------------------------------------HSWLESLSIKNCGDLSDMSLVAIGRGCSKLVK 266 (554)
Q Consensus 229 L~l~~~------------------------------------------~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~ 266 (554)
|.+..+ ..+|++|++++|. +++..+..+...+++|++
T Consensus 240 L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~ 318 (594)
T 2p1m_B 240 LGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQR 318 (594)
T ss_dssp EECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCE
T ss_pred cccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCE
Confidence 553221 0289999999999 999988888888999999
Q ss_pred EEecCCCCCCHHHHHHHHHHhcCCccEEEEe--------ccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhcc
Q 039096 267 FEVEGCKNITVDGLRTLASLLRETLVVIKIY--------CCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKAT 338 (554)
Q Consensus 267 L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~--------~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 338 (554)
|++.+| +++.++..+...+ ++|++|++. .|..+ +..++..+...|++|++|.+.++.++......+
T Consensus 319 L~l~~~--~~~~~l~~l~~~~-~~L~~L~L~~~~~~g~~~~~~l-~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l-- 392 (594)
T 2p1m_B 319 LWVLDY--IEDAGLEVLASTC-KDLRELRVFPSEPFVMEPNVAL-TEQGLVSVSMGCPKLESVLYFCRQMTNAALITI-- 392 (594)
T ss_dssp EEEEGG--GHHHHHHHHHHHC-TTCCEEEEECSCTTCSSCSSCC-CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH--
T ss_pred EeCcCc--cCHHHHHHHHHhC-CCCCEEEEecCcccccccCCCC-CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH--
Confidence 999998 6788898888888 999999994 45566 455677777779999999888888777666655
Q ss_pred CCccchhhhhcCCCCceEEee-----cccCCccCcccc-cc----CcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhh
Q 039096 339 GNTSTIFSKTRWKSLKELSFW-----IEVGELLTPLPV-AG----LDECPILENIRIKMEGDTREKPLLRDDKAWGLSCL 408 (554)
Q Consensus 339 ~~~~~~~~~~~~~~L~~L~l~-----~c~~~~~t~l~~-~~----l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l 408 (554)
...+++|+.|++. .|.. ++..+. .+ +..|++|+.|+++ ..++ +.++..+
T Consensus 393 --------~~~~~~L~~L~L~~~~~~~~~~--l~~~~~~~~~~~l~~~~~~L~~L~L~--------~~l~---~~~~~~l 451 (594)
T 2p1m_B 393 --------ARNRPNMTRFRLCIIEPKAPDY--LTLEPLDIGFGAIVEHCKDLRRLSLS--------GLLT---DKVFEYI 451 (594)
T ss_dssp --------HHHCTTCCEEEEEESSTTCCCT--TTCCCTHHHHHHHHHHCTTCCEEECC--------SSCC---HHHHHHH
T ss_pred --------HhhCCCcceeEeecccCCCccc--ccCCchhhHHHHHHhhCCCccEEeec--------Cccc---HHHHHHH
Confidence 2579999999998 4444 553322 11 3789999999997 4566 8888888
Q ss_pred cc-CCCccceeeecCCccccccccc-ccCCCCchhhhHhhcccccceecccccCCCCCcCCcchhhhhHHHHHHHhcccc
Q 039096 409 TR-YPRLSKLVLDFGDTDGHNQAAP-YKAADLSTWDRFVLNGIGNLILKELDYWPAKDPNASQRSLSRLAAALISNCITL 486 (554)
Q Consensus 409 ~~-~~~L~~L~l~c~~~~~~~~~~~-~~~~~L~~l~~~~l~~~~~l~L~~l~~~~~~~~~~~~~~~~lp~~~~l~~~~~L 486 (554)
+. +++|+.|+++++.+++.++..+ ..++ . |+.++..... +... ....++..+++|
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~--------------~--L~~L~L~~n~---~~~~----~~~~~~~~l~~L 508 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCD--------------S--LRKLEIRDCP---FGDK----ALLANASKLETM 508 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHHHHHHHHHCT--------------T--CCEEEEESCS---CCHH----HHHHTGGGGGGS
T ss_pred HHhchhccEeeccCCCCcHHHHHHHHhcCC--------------C--cCEEECcCCC---CcHH----HHHHHHHhCCCC
Confidence 88 9999999999777877655432 1122 2 2233322221 1110 111125679999
Q ss_pred ceeeeccchh--hHHHHhhhcCCCCCcccccccccccC
Q 039096 487 RKVFVHCTAR--EHFMSMLISPTPNPKKARDAQIKLDY 522 (554)
Q Consensus 487 ~~L~i~~~~~--~~~~~~~~~~~~~~~~L~~l~l~~~~ 522 (554)
+.|+++++.. +.+..+... +|+ |+...+.++.
T Consensus 509 ~~L~l~~~~~~~~~~~~l~~~-lp~---l~i~~~~~~~ 542 (594)
T 2p1m_B 509 RSLWMSSCSVSFGACKLLGQK-MPK---LNVEVIDERG 542 (594)
T ss_dssp SEEEEESSCCBHHHHHHHHHH-CTT---EEEEEECSSS
T ss_pred CEEeeeCCCCCHHHHHHHHHh-CCC---CEEEEecCCC
Confidence 9999996543 344444455 888 7766666543
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=2.1e-24 Score=232.89 Aligned_cols=394 Identities=14% Similarity=0.136 Sum_probs=277.7
Q ss_pred eeEEEEecCC--C---------------chhchhhcCCCCcEEeccCCcccccccccCCCccCCCcc-cceeeccccccc
Q 039096 5 RTSITLRGNA--C---------------NLNIVPLCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPR-LLADLLQMSFLC 66 (554)
Q Consensus 5 r~~L~l~~~~--~---------------~l~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~ 66 (554)
-++|++++|+ . .+..+...+++|++|+|+++ .+....+ ..+...++. |++|++.++.+.
T Consensus 75 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~--~~l~~~~~~~L~~L~L~~~~~~ 151 (592)
T 3ogk_B 75 LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDL--DRLAKARADDLETLKLDKCSGF 151 (592)
T ss_dssp CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHH--HHHHHHHGGGCCEEEEESCEEE
T ss_pred CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHH--HHHHHhccccCcEEECcCCCCc
Confidence 4678887753 1 13444558999999999998 5554433 333312334 999999966555
Q ss_pred CcccHHHHHhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhH---
Q 039096 67 FGAEFVPLLKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWA--- 143 (554)
Q Consensus 67 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~--- 143 (554)
....+..+...|++|++|+|++|. +.+....++..++..+++|++|+++++. ..+++...+..++.+|++|+.|.
T Consensus 152 ~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 152 TTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp EHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred CHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccC
Confidence 555666777899999999999983 4444223344444455799999999886 33456888999999999999986
Q ss_pred ------HHHhccCCCCCEEEecccccccccC-CCC---CCCCCcc-ccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCc
Q 039096 144 ------VSIATNCPRLTLLHLAETSTLAAMR-GDP---DDDGFTA-EDARISEEGLIQLFSGLPLLEELALDVGKNVRDS 212 (554)
Q Consensus 144 ------~~~~~~~~~L~~L~l~~c~~l~~~~-~~~---~~~g~~~-~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~ 212 (554)
......+++|++|+++++....... ... ....+.. ....+....+..+...+++|++|++++|. +++.
T Consensus 230 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~ 308 (592)
T 3ogk_B 230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETE 308 (592)
T ss_dssp CBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHH
T ss_pred ccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHH
Confidence 3444578999999997531110000 000 0001100 00112233445556678999999999987 7665
Q ss_pred hhhHHHHHhcCCCCcEeeccccc------------CcccEEEecC----------CCCCCHHHHHHHHhcCCCCcEEEec
Q 039096 213 GSASEALKSKCVNLKGLKLGQLH------------SWLESLSIKN----------CGDLSDMSLVAIGRGCSKLVKFEVE 270 (554)
Q Consensus 213 ~~~l~~l~~~~~~L~~L~l~~~~------------~~L~~L~l~~----------~~~l~~~~l~~l~~~~~~L~~L~L~ 270 (554)
+ +..+...+++|++|++.++. .+|++|++++ |..+++.++..+...|++|++|++.
T Consensus 309 ~--~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~ 386 (592)
T 3ogk_B 309 D--HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY 386 (592)
T ss_dssp H--HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE
T ss_pred H--HHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee
Confidence 5 44555899999999997432 2899999995 7779999999988889999999995
Q ss_pred CCCCCCHHHHHHHHHHhcCCccEEEEec---cCCCChh---HHHHHHhhcCCCccEEEeeee--eccccchhhhccCCcc
Q 039096 271 GCKNITVDGLRTLASLLRETLVVIKIYC---CENLGAV---ASCKALKPIRDRIQKLHIDCV--WDGIRSSEAKATGNTS 342 (554)
Q Consensus 271 ~c~~i~~~~~~~l~~~~~~~L~~L~l~~---c~~~~~~---~~l~~l~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~ 342 (554)
|..+++.++..+...+ ++|++|++.+ |..++.. .++..+...|++|++|+++.+ .+++..+..+
T Consensus 387 -~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~------ 458 (592)
T 3ogk_B 387 -VSDITNESLESIGTYL-KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI------ 458 (592)
T ss_dssp -ESCCCHHHHHHHHHHC-CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH------
T ss_pred -cCCccHHHHHHHHhhC-CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH------
Confidence 4559999999998878 8999999984 5566432 356677778999999999643 2455555555
Q ss_pred chhhhhcCCCCceEEeecccCCccCccccccC-cCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhcc-CCCccceeee
Q 039096 343 TIFSKTRWKSLKELSFWIEVGELLTPLPVAGL-DECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTR-YPRLSKLVLD 420 (554)
Q Consensus 343 ~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l-~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~-~~~L~~L~l~ 420 (554)
...+++|++|++++|. +++.....+ ..|++|++|+++ +| . ++ +.++..+.. +++|+.|+++
T Consensus 459 ----~~~~~~L~~L~L~~n~---l~~~~~~~~~~~~~~L~~L~l~---~n---~-l~---~~~~~~~~~~l~~L~~L~ls 521 (592)
T 3ogk_B 459 ----GQYSPNVRWMLLGYVG---ESDEGLMEFSRGCPNLQKLEMR---GC---C-FS---ERAIAAAVTKLPSLRYLWVQ 521 (592)
T ss_dssp ----HHSCTTCCEEEECSCC---SSHHHHHHHHTCCTTCCEEEEE---SC---C-CB---HHHHHHHHHHCSSCCEEEEE
T ss_pred ----HHhCccceEeeccCCC---CCHHHHHHHHhcCcccCeeecc---CC---C-Cc---HHHHHHHHHhcCccCeeECc
Confidence 2568999999998776 655443333 789999999999 88 3 56 777766655 9999999999
Q ss_pred cCCcccccccc
Q 039096 421 FGDTDGHNQAA 431 (554)
Q Consensus 421 c~~~~~~~~~~ 431 (554)
.+.+++.+...
T Consensus 522 ~n~it~~~~~~ 532 (592)
T 3ogk_B 522 GYRASMTGQDL 532 (592)
T ss_dssp SCBCCTTCTTG
T ss_pred CCcCCHHHHHH
Confidence 55588776544
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=2.8e-22 Score=209.46 Aligned_cols=220 Identities=16% Similarity=0.157 Sum_probs=118.2
Q ss_pred CCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcc---cHHHHHhcCCCCcEEEecCCCCCCCChhHHH
Q 039096 24 FDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGA---EFVPLLKHCKCLTSVDLSSFYHWTEDLPPVL 100 (554)
Q Consensus 24 ~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l 100 (554)
.++|++||++++ .+..... ..+...+++|++++++++. +... .+...+..+++|++|++++|. +.+..+..+
T Consensus 2 ~~~l~~L~Ls~~-~l~~~~~--~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l 76 (461)
T 1z7x_W 2 SLDIQSLDIQCE-ELSDARW--AELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCV 76 (461)
T ss_dssp CEEEEEEEEESC-CCCHHHH--HHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHH
T ss_pred Cccceehhhhhc-ccCchhH--HHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHH
Confidence 357888999877 4433322 2212256778888887443 2222 334456777888888888763 333222222
Q ss_pred hh-cCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccc
Q 039096 101 KA-YPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAE 179 (554)
Q Consensus 101 ~~-l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~ 179 (554)
.. ++...++|++|++++|. +++.++..+ ......+++|++|++++|
T Consensus 77 ~~~l~~~~~~L~~L~L~~n~----i~~~~~~~l-----------~~~l~~~~~L~~L~Ls~n------------------ 123 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNCC----LTGAGCGVL-----------SSTLRTLPTLQELHLSDN------------------ 123 (461)
T ss_dssp HHTTCSTTCCCCEEECTTSC----CBGGGHHHH-----------HHHTTSCTTCCEEECCSS------------------
T ss_pred HHHHhhCCCceeEEEccCCC----CCHHHHHHH-----------HHHHccCCceeEEECCCC------------------
Confidence 22 32111268888888776 555554444 222346778888888763
Q ss_pred cCCCCHHHHHHHHhC----CCCCcEEEecCCCCCCCchhh-HHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHH
Q 039096 180 DARISEEGLIQLFSG----LPLLEELALDVGKNVRDSGSA-SEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSL 254 (554)
Q Consensus 180 ~~~i~~~~l~~l~~~----~~~L~~L~L~~c~~l~~~~~~-l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l 254 (554)
.+++.++..+... .++|++|++++| .+++.+.. +......+++|++|++ ++|. +++.+.
T Consensus 124 --~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L------------~~n~-i~~~~~ 187 (461)
T 1z7x_W 124 --LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTV------------SNND-INEAGV 187 (461)
T ss_dssp --BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEEC------------CSSB-CHHHHH
T ss_pred --cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEEC------------cCCC-cchHHH
Confidence 4556555555432 457888888876 47655421 1122245677665555 4444 444444
Q ss_pred HHHHhc----CCCCcEEEecCCCCCCHHHHHHHH---HHhcCCccEEEEecc
Q 039096 255 VAIGRG----CSKLVKFEVEGCKNITVDGLRTLA---SLLRETLVVIKIYCC 299 (554)
Q Consensus 255 ~~l~~~----~~~L~~L~L~~c~~i~~~~~~~l~---~~~~~~L~~L~l~~c 299 (554)
..+... .++|++|++++|. +++.++..+. ..+ ++|++|++++|
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~-~~L~~L~Ls~n 237 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASK-ASLRELALGSN 237 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHC-TTCCEEECCSS
T ss_pred HHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhC-CCccEEeccCC
Confidence 443331 2355555555554 4444322222 223 55555555555
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1.3e-25 Score=249.10 Aligned_cols=438 Identities=16% Similarity=0.086 Sum_probs=221.7
Q ss_pred eeEEEEecCC--CchhchhhcC---CCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHH--HHhc
Q 039096 5 RTSITLRGNA--CNLNIVPLCF---DAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVP--LLKH 77 (554)
Q Consensus 5 r~~L~l~~~~--~~l~~l~~~~---~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~--~~~~ 77 (554)
.+.|+++++. +.+..+|..+ ++|+.++++.+... ... +.+. .+.+|++|+++++... ..+.. .+++
T Consensus 52 v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~--~l~--~~~~-~l~~L~~L~Ls~n~l~--~~~~~~~~l~~ 124 (768)
T 3rgz_A 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN--GSV--SGFK-CSASLTSLDLSRNSLS--GPVTTLTSLGS 124 (768)
T ss_dssp EEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE--ECC--CCCC-CCTTCCEEECCSSEEE--EEGGGGGGGGG
T ss_pred EEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC--CCc--hhhc-cCCCCCEEECCCCcCC--CcCCChHHHhC
Confidence 4677887663 2222366544 45555555555211 111 3444 8889999999844311 11223 4778
Q ss_pred CCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHH--HHHhCCChHhhH--------HHHh
Q 039096 78 CKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIE--IIAARPNLNKWA--------VSIA 147 (554)
Q Consensus 78 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~--l~~~~~~L~~L~--------~~~~ 147 (554)
+++|++|++++| .+....|..+ ...+++|++|++++|. ++...... .+.++++|+.|. ..-.
T Consensus 125 l~~L~~L~Ls~n-~l~~~~~~~~---~~~l~~L~~L~Ls~n~----l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 196 (768)
T 3rgz_A 125 CSGLKFLNVSSN-TLDFPGKVSG---GLKLNSLEVLDLSANS----ISGANVVGWVLSDGCGELKHLAISGNKISGDVDV 196 (768)
T ss_dssp CTTCCEEECCSS-EEECCSSCCS---CCCCTTCSEEECCSSC----CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC
T ss_pred CCCCCEEECcCC-ccCCcCCHHH---hccCCCCCEEECCCCc----cCCcCChhhhhhccCCCCCEEECCCCcccccCCc
Confidence 999999999987 3333333221 1234689999999886 32211111 135566666665 0011
Q ss_pred ccCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCc
Q 039096 148 TNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLK 227 (554)
Q Consensus 148 ~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~ 227 (554)
..+++|++|++++|...... .. ...+++|++|++++|. +++.. ...+ ..+++|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~---------------------~~-l~~l~~L~~L~Ls~n~-l~~~~--~~~l-~~l~~L~ 250 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGI---------------------PF-LGDCSALQHLDISGNK-LSGDF--SRAI-STCTELK 250 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCC---------------------CB-CTTCCSCCEEECCSSC-CCSCH--HHHT-TTCSSCC
T ss_pred ccCCcCCEEECcCCcCCCCC---------------------cc-cccCCCCCEEECcCCc-CCCcc--cHHH-hcCCCCC
Confidence 35677777777765211100 00 2344555555555532 43332 1233 4555555
Q ss_pred EeecccccC----------cccEEEecCCCC------------------------CCHHHHHHHHhcCCCCcEEEecCCC
Q 039096 228 GLKLGQLHS----------WLESLSIKNCGD------------------------LSDMSLVAIGRGCSKLVKFEVEGCK 273 (554)
Q Consensus 228 ~L~l~~~~~----------~L~~L~l~~~~~------------------------l~~~~l~~l~~~~~~L~~L~L~~c~ 273 (554)
+|+++++.- +|++|++++|.. +++.....+ ..+++|++|++++|.
T Consensus 251 ~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 251 LLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNN 329 (768)
T ss_dssp EEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSE
T ss_pred EEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCc
Confidence 555544321 444555544430 221111111 124455555555443
Q ss_pred CCCHHHHHHHHHHhcCCccEEEEeccCCCC-hhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCC
Q 039096 274 NITVDGLRTLASLLRETLVVIKIYCCENLG-AVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKS 352 (554)
Q Consensus 274 ~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~-~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (554)
+++.........+ ++|++|++++|...+ ....+. ...++|++|+++.+.+....+..+ ....+++
T Consensus 330 -l~~~ip~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~---~l~~~L~~L~Ls~N~l~~~~~~~~---------~~~~~~~ 395 (768)
T 3rgz_A 330 -FSGELPMDTLLKM-RGLKVLDLSFNEFSGELPESLT---NLSASLLTLDLSSNNFSGPILPNL---------CQNPKNT 395 (768)
T ss_dssp -EEEECCHHHHTTC-TTCCEEECCSSEEEECCCTTHH---HHTTTCSEEECCSSEEEEECCTTT---------TCSTTCC
T ss_pred -ccCcCCHHHHhcC-CCCCEEeCcCCccCccccHHHH---hhhcCCcEEEccCCCcCCCcChhh---------hhcccCC
Confidence 1100000101112 455555555443210 001111 111245555554443333222222 0112667
Q ss_pred CceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCccccccccc
Q 039096 353 LKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQAAP 432 (554)
Q Consensus 353 L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~~~~ 432 (554)
|++|++++|. +++..+..+..+++|+.|+++ +|. ++ ......+..+++|+.|+++.+.+++.....+
T Consensus 396 L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~Ls---~N~----l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 462 (768)
T 3rgz_A 396 LQELYLQNNG---FTGKIPPTLSNCSELVSLHLS---FNY----LS---GTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462 (768)
T ss_dssp CCEEECCSSE---EEEECCGGGGGCTTCCEEECC---SSE----EE---SCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ccEEECCCCc---cccccCHHHhcCCCCCEEECc---CCc----cc---CcccHHHhcCCCCCEEECCCCcccCcCCHHH
Confidence 7888877665 555555667788888888887 552 22 2222456778889999998777776665555
Q ss_pred ccCCCCchhhhHhhc-------ccccc-eecccccCCCCCcCCcchhhhhHHHHHHHhccccceeeeccchhh-HHHHhh
Q 039096 433 YKAADLSTWDRFVLN-------GIGNL-ILKELDYWPAKDPNASQRSLSRLAAALISNCITLRKVFVHCTARE-HFMSML 503 (554)
Q Consensus 433 ~~~~~L~~l~~~~l~-------~~~~l-~L~~l~~~~~~~~~~~~~~~~lp~~~~l~~~~~L~~L~i~~~~~~-~~~~~~ 503 (554)
..++.|..++..... .++.+ +|+.++.. .|...+.+|.. ++++++|+.|+++++... ..+...
T Consensus 463 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~------~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS------NNRLTGEIPKW--IGRLENLAILKLSNNSFSGNIPAEL 534 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC------SSCCCSCCCGG--GGGCTTCCEEECCSSCCEEECCGGG
T ss_pred cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc------CCccCCcCChH--HhcCCCCCEEECCCCcccCcCCHHH
Confidence 556666554432211 11222 23333322 22333345666 788889999998865543 233333
Q ss_pred hcCCCCCcccccccccccCC
Q 039096 504 ISPTPNPKKARDAQIKLDYY 523 (554)
Q Consensus 504 ~~~~~~~~~L~~l~l~~~~~ 523 (554)
.. +++ |+.|++.++.+
T Consensus 535 ~~-l~~---L~~L~Ls~N~l 550 (768)
T 3rgz_A 535 GD-CRS---LIWLDLNTNLF 550 (768)
T ss_dssp GG-CTT---CCEEECCSSEE
T ss_pred cC-CCC---CCEEECCCCcc
Confidence 34 788 99999988764
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=3.6e-25 Score=245.69 Aligned_cols=365 Identities=16% Similarity=0.106 Sum_probs=194.4
Q ss_pred eEEEEecCCC--chhc---hhhcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCC
Q 039096 6 TSITLRGNAC--NLNI---VPLCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKC 80 (554)
Q Consensus 6 ~~L~l~~~~~--~l~~---l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~ 80 (554)
++|++++|.- .... ....+++|++|+++++ .+.... ... .+.+|++|+++++.... ..+.++.+++
T Consensus 154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~----~~~-~l~~L~~L~Ls~n~l~~---~~~~l~~l~~ 224 (768)
T 3rgz_A 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGN-KISGDV----DVS-RCVNLEFLDVSSNNFST---GIPFLGDCSA 224 (768)
T ss_dssp SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS-EEESCC----BCT-TCTTCCEEECCSSCCCS---CCCBCTTCCS
T ss_pred CEEECCCCccCCcCChhhhhhccCCCCCEEECCCC-cccccC----Ccc-cCCcCCEEECcCCcCCC---CCcccccCCC
Confidence 5677777741 1111 1345677778887777 333221 112 66777777777432111 1111556777
Q ss_pred CcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhH-----------HHHhcc
Q 039096 81 LTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWA-----------VSIATN 149 (554)
Q Consensus 81 L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~-----------~~~~~~ 149 (554)
|++|++++| .+.+.+|..+..+ ++|++|++++|.....+.. ..+++|+.|. ..+...
T Consensus 225 L~~L~Ls~n-~l~~~~~~~l~~l----~~L~~L~Ls~n~l~~~~~~-------~~l~~L~~L~L~~n~l~~~ip~~~~~~ 292 (768)
T 3rgz_A 225 LQHLDISGN-KLSGDFSRAISTC----TELKLLNISSNQFVGPIPP-------LPLKSLQYLSLAENKFTGEIPDFLSGA 292 (768)
T ss_dssp CCEEECCSS-CCCSCHHHHTTTC----SSCCEEECCSSCCEESCCC-------CCCTTCCEEECCSSEEEESCCCCSCTT
T ss_pred CCEEECcCC-cCCCcccHHHhcC----CCCCEEECCCCcccCccCc-------cccCCCCEEECcCCccCCccCHHHHhh
Confidence 777777766 3455555555544 4677777776653211111 0344454443 122223
Q ss_pred CCCCCEEEecccccccccCCC-CCCCCCcc---ccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCC-
Q 039096 150 CPRLTLLHLAETSTLAAMRGD-PDDDGFTA---EDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCV- 224 (554)
Q Consensus 150 ~~~L~~L~l~~c~~l~~~~~~-~~~~g~~~---~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~- 224 (554)
+++|++|++++|..-...... .....+.. ..+.+++.........+++|++|++++|. +++..+ ..+ ..++
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~-l~~~~p--~~l-~~l~~ 368 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE-FSGELP--ESL-TNLSA 368 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE-EEECCC--TTH-HHHTT
T ss_pred cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc-cCcccc--HHH-Hhhhc
Confidence 466666666655211100000 00000000 00111111111223467778888887753 543322 134 3333
Q ss_pred CCcEeeccccc--------------CcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCC
Q 039096 225 NLKGLKLGQLH--------------SWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRET 290 (554)
Q Consensus 225 ~L~~L~l~~~~--------------~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~ 290 (554)
+|+.|+++++. .+|++|++++|. +++.....+ ..+++|+.|++++|. +++..... ...+ ++
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~Ls~N~-l~~~~p~~-l~~l-~~ 443 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG-FTGKIPPTL-SNCSELVSLHLSFNY-LSGTIPSS-LGSL-SK 443 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE-EEEECCGGG-GGCTTCCEEECCSSE-EESCCCGG-GGGC-TT
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc-cccccCHHH-hcCCCCCEEECcCCc-ccCcccHH-HhcC-CC
Confidence 77777776642 157777777775 333222223 337888888888876 33211111 1223 77
Q ss_pred ccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccc
Q 039096 291 LVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLP 370 (554)
Q Consensus 291 L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~ 370 (554)
|+.|++++|...+. ++.....+++|++|+++.+.+....+..+ ..+++|++|++++|. +++..
T Consensus 444 L~~L~L~~n~l~~~---~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-----------~~l~~L~~L~L~~N~---l~~~~ 506 (768)
T 3rgz_A 444 LRDLKLWLNMLEGE---IPQELMYVKTLETLILDFNDLTGEIPSGL-----------SNCTNLNWISLSNNR---LTGEI 506 (768)
T ss_dssp CCEEECCSSCCCSC---CCGGGGGCTTCCEEECCSSCCCSCCCGGG-----------GGCTTCCEEECCSSC---CCSCC
T ss_pred CCEEECCCCcccCc---CCHHHcCCCCceEEEecCCcccCcCCHHH-----------hcCCCCCEEEccCCc---cCCcC
Confidence 88888887764421 11223346778888887776555555555 678888888887666 66555
Q ss_pred cccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCcccc
Q 039096 371 VAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGH 427 (554)
Q Consensus 371 ~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~ 427 (554)
+..+..+++|+.|+++ +|.... .....+..+++|+.|+++.|.+++.
T Consensus 507 p~~~~~l~~L~~L~L~---~N~l~~-------~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 507 PKWIGRLENLAILKLS---NNSFSG-------NIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CGGGGGCTTCCEEECC---SSCCEE-------ECCGGGGGCTTCCEEECCSSEEESB
T ss_pred ChHHhcCCCCCEEECC---CCcccC-------cCCHHHcCCCCCCEEECCCCccCCc
Confidence 6667778888888887 663322 2224566788888888886666544
No 8
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=7.1e-22 Score=206.35 Aligned_cols=274 Identities=16% Similarity=0.158 Sum_probs=152.2
Q ss_pred ceeEEEEecCCC---chhchhhcCCCCcEEeccCCccccccccc--CCCccCCCcccceeecccccccCcccHHHHHhcC
Q 039096 4 TRTSITLRGNAC---NLNIVPLCFDAVTNLQLSNISPWGHSLLF--SPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHC 78 (554)
Q Consensus 4 ~r~~L~l~~~~~---~l~~l~~~~~~L~~L~Ls~~~~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~ 78 (554)
.-++|+++++.- ....+...+++|+.|++++| .+...... ...+. .+++|++++++++. +.+.....+...+
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~-l~~~~~~~l~~~l 80 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALR-VNPALAELNLRSNE-LGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHH-TCTTCCEEECTTCC-CHHHHHHHHHHTT
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHH-hCCCcCEEeCCCCc-CChHHHHHHHHHH
Confidence 357899987741 13344567899999999998 45432110 01222 67899999999432 2333344455556
Q ss_pred C----CCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCC
Q 039096 79 K----CLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLT 154 (554)
Q Consensus 79 ~----~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~ 154 (554)
+ +|++|++++|. +.+.....+......+++|++|++++|. +++.++..+.. .+....++|+
T Consensus 81 ~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~----i~~~~~~~l~~----------~l~~~~~~L~ 145 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL----LGDAGLQLLCE----------GLLDPQCRLE 145 (461)
T ss_dssp CSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB----CHHHHHHHHHH----------HHTSTTCCCC
T ss_pred hhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc----CchHHHHHHHH----------HHhcCCCcce
Confidence 6 79999999984 4432211222222345799999999987 77766665532 2233456899
Q ss_pred EEEecccccccccCCCCCCCCCccccCCCCH---HHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHh----cCCCCc
Q 039096 155 LLHLAETSTLAAMRGDPDDDGFTAEDARISE---EGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKS----KCVNLK 227 (554)
Q Consensus 155 ~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~---~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~----~~~~L~ 227 (554)
+|++++| .+++ ..+......+++|++|+++++. +++.+ ...++. ..++|+
T Consensus 146 ~L~L~~n--------------------~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~--~~~l~~~l~~~~~~L~ 202 (461)
T 1z7x_W 146 KLQLEYC--------------------SLSAASCEPLASVLRAKPDFKELTVSNND-INEAG--VRVLCQGLKDSPCQLE 202 (461)
T ss_dssp EEECTTS--------------------CCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHH--HHHHHHHHHHSCCCCC
T ss_pred EEECCCC--------------------CCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHH--HHHHHHHHhcCCCCce
Confidence 9999775 2333 2344445567899999998865 76554 334432 344666
Q ss_pred EeecccccCcccEEEecCCCCCCHHHH---HHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHh---cCCccEEEEeccCC
Q 039096 228 GLKLGQLHSWLESLSIKNCGDLSDMSL---VAIGRGCSKLVKFEVEGCKNITVDGLRTLASLL---RETLVVIKIYCCEN 301 (554)
Q Consensus 228 ~L~l~~~~~~L~~L~l~~~~~l~~~~l---~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~---~~~L~~L~l~~c~~ 301 (554)
+|++ ++|. +++.+. ......+++|++|++++|. +++.++..+...+ .++|++|++++|.
T Consensus 203 ~L~L------------~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~- 267 (461)
T 1z7x_W 203 ALKL------------ESCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECG- 267 (461)
T ss_dssp EEEC------------TTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-
T ss_pred EEEc------------cCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCC-
Confidence 5444 4443 343322 1122235555666665554 5555554444321 0455555555553
Q ss_pred CChhH--HHHHHhhcCCCccEEEeeeeeccccch
Q 039096 302 LGAVA--SCKALKPIRDRIQKLHIDCVWDGIRSS 333 (554)
Q Consensus 302 ~~~~~--~l~~l~~~~~~L~~L~l~~~~~~~~~~ 333 (554)
++... .+......+++|++|+++.+.+++.+.
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 21110 122222335555666555544444333
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=1.1e-23 Score=227.97 Aligned_cols=100 Identities=16% Similarity=-0.038 Sum_probs=49.1
Q ss_pred eEEEEecCCCchhch----hhcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccH-HHHHhcCCC
Q 039096 6 TSITLRGNACNLNIV----PLCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEF-VPLLKHCKC 80 (554)
Q Consensus 6 ~~L~l~~~~~~l~~l----~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l-~~~~~~~~~ 80 (554)
++|+++++. +..+ ...+++|++|+++++ .+..... ..+. .+.+|++|+++++.. ..+ ...++.+++
T Consensus 36 ~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~--~~~~-~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 36 ECLEFSFNV--LPTIQNTTFSRLINLTFLDLTRC-QIYWIHE--DTFQ-SQHRLDTLVLTANPL---IFMAETALSGPKA 106 (606)
T ss_dssp CEEECTTCC--CSEECTTTSTTCTTCSEEECTTC-CCCEECT--TTTT-TCTTCCEEECTTCCC---SEECTTTTSSCTT
T ss_pred cEEEccCCc--cCcCChhHhccCccceEEECCCC-ccceeCh--hhcc-CccccCeeeCCCCcc---cccChhhhccccc
Confidence 556666553 1122 234566777777766 3322211 2333 666777777763311 111 122455667
Q ss_pred CcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCC
Q 039096 81 LTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTS 119 (554)
Q Consensus 81 L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 119 (554)
|++|++++|. +....+..+. .+++|++|++++|.
T Consensus 107 L~~L~L~~n~-i~~l~~~~~~----~l~~L~~L~L~~n~ 140 (606)
T 3t6q_A 107 LKHLFFIQTG-ISSIDFIPLH----NQKTLESLYLGSNH 140 (606)
T ss_dssp CCEEECTTSC-CSCGGGSCCT----TCTTCCEEECCSSC
T ss_pred ccEeeccccC-cccCCcchhc----cCCcccEEECCCCc
Confidence 7777776652 2322122222 33567777777665
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=9.5e-23 Score=220.62 Aligned_cols=255 Identities=13% Similarity=0.035 Sum_probs=112.7
Q ss_pred hcCCCCcEeecccccC----------cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCC
Q 039096 221 SKCVNLKGLKLGQLHS----------WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRET 290 (554)
Q Consensus 221 ~~~~~L~~L~l~~~~~----------~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~ 290 (554)
..+++|+.|++.++.. +|+.|++++|. +... ..+ .+++|+.|++++|..+....+ ..+ ++
T Consensus 282 ~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~-l~~l--p~~--~l~~L~~L~l~~n~~~~~~~~----~~l-~~ 351 (606)
T 3vq2_A 282 HCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQ-LKQF--PTL--DLPFLKSLTLTMNKGSISFKK----VAL-PS 351 (606)
T ss_dssp GGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCC-CSSC--CCC--CCSSCCEEEEESCSSCEECCC----CCC-TT
T ss_pred ccCCCCCEEEecCccchhhhhccccccCCEEEccccc-Cccc--ccC--CCCccceeeccCCcCccchhh----ccC-CC
Confidence 4556666666654331 56666666665 3221 122 356666666666643221110 122 56
Q ss_pred ccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccc
Q 039096 291 LVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLP 370 (554)
Q Consensus 291 L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~ 370 (554)
|++|++++|... ...........+++|++|+++.+.+.... ..+ ..+++|++|++++|. ++...
T Consensus 352 L~~L~ls~n~l~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~-----------~~l~~L~~L~l~~n~---l~~~~ 415 (606)
T 3vq2_A 352 LSYLDLSRNALS-FSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANF-----------MGLEELQHLDFQHST---LKRVT 415 (606)
T ss_dssp CCEEECCSSCEE-EEEECCHHHHCCSCCCEEECCSCSEEEEC-CCC-----------TTCTTCCEEECTTSE---EESTT
T ss_pred CCEEECcCCccC-CCcchhhhhccCCcccEeECCCCccccch-hhc-----------cCCCCCCeeECCCCc---cCCcc
Confidence 666666655422 11000112234556666666544322211 222 445566666665444 33333
Q ss_pred c-ccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCcccc-cccccccCCCCchhhhHhh--
Q 039096 371 V-AGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGH-NQAAPYKAADLSTWDRFVL-- 446 (554)
Q Consensus 371 ~-~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~-~~~~~~~~~~L~~l~~~~l-- 446 (554)
. ..+..+++|+.|+++ +|. +. ......+..+++|+.|+++.+.+++. ....+..++.|..++....
T Consensus 416 ~~~~~~~l~~L~~L~l~---~n~----l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 416 EFSAFLSLEKLLYLDIS---YTN----TK---IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp TTTTTTTCTTCCEEECT---TSC----CE---ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred ChhhhhccccCCEEECc---CCC----CC---ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence 3 334555666666665 442 11 11112344455566666654444442 2222233333333322111
Q ss_pred -----cccccc-eecccccCCCCCcCCcchhhhhHHHHHHHhccccceeeeccchhhHHHHhhhcCCC-CCccccccccc
Q 039096 447 -----NGIGNL-ILKELDYWPAKDPNASQRSLSRLAAALISNCITLRKVFVHCTAREHFMSMLISPTP-NPKKARDAQIK 519 (554)
Q Consensus 447 -----~~~~~l-~L~~l~~~~~~~~~~~~~~~~lp~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~-~~~~L~~l~l~ 519 (554)
..++.+ .|+.++.... ......|.. +.++++|+.|+++++....++..... +| + |+.+++.
T Consensus 486 ~~~~~~~~~~l~~L~~L~Ls~N------~l~~~~~~~--~~~l~~L~~L~l~~N~l~~~p~~~~~-l~~~---L~~l~l~ 553 (606)
T 3vq2_A 486 EQISWGVFDTLHRLQLLNMSHN------NLLFLDSSH--YNQLYSLSTLDCSFNRIETSKGILQH-FPKS---LAFFNLT 553 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSS------CCSCEEGGG--TTTCTTCCEEECTTSCCCCEESCGGG-SCTT---CCEEECC
T ss_pred CccChhhhcccccCCEEECCCC------cCCCcCHHH--ccCCCcCCEEECCCCcCcccCHhHhh-hccc---CcEEEcc
Confidence 011112 2222222221 111112333 56677777777775554444433223 33 5 7777777
Q ss_pred ccCC
Q 039096 520 LDYY 523 (554)
Q Consensus 520 ~~~~ 523 (554)
++.+
T Consensus 554 ~N~~ 557 (606)
T 3vq2_A 554 NNSV 557 (606)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6554
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=1.4e-21 Score=211.46 Aligned_cols=413 Identities=14% Similarity=0.026 Sum_probs=218.5
Q ss_pred chhchhhc-CCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccH-HHHHhcCCCCcEEEecCCCCCC
Q 039096 16 NLNIVPLC-FDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEF-VPLLKHCKCLTSVDLSSFYHWT 93 (554)
Q Consensus 16 ~l~~l~~~-~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~ 93 (554)
.+..+|.. .+++++|+++++ .+..... ..+. .+++|++++++++. -..+ ...+.++++|++|++++| .+.
T Consensus 22 ~l~~ip~~~~~~l~~L~Ls~n-~l~~~~~--~~~~-~l~~L~~L~Ls~n~---l~~i~~~~~~~l~~L~~L~Ls~n-~l~ 93 (606)
T 3vq2_A 22 KLSKVPDDIPSSTKNIDLSFN-PLKILKS--YSFS-NFSELQWLDLSRCE---IETIEDKAWHGLHHLSNLILTGN-PIQ 93 (606)
T ss_dssp CCSSCCTTSCTTCCEEECTTS-CCCEECT--TTTT-TCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTC-CCC
T ss_pred CcccCCCCCCCCcCEEECCCC-CcCEeCh--hhcc-CCccCcEEeCCCCc---ccccCHHHhhchhhcCEeECCCC-ccc
Confidence 46677774 468999999988 4433222 3454 88899999998432 1122 223678899999999887 345
Q ss_pred CChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCC
Q 039096 94 EDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDD 173 (554)
Q Consensus 94 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 173 (554)
...|..+..+ ++|++|++++|.... +... ....+++|++|++++|.
T Consensus 94 ~~~p~~~~~l----~~L~~L~L~~n~l~~-~~~~------------------~~~~l~~L~~L~L~~n~----------- 139 (606)
T 3vq2_A 94 SFSPGSFSGL----TSLENLVAVETKLAS-LESF------------------PIGQLITLKKLNVAHNF----------- 139 (606)
T ss_dssp CCCTTSSTTC----TTCCEEECTTSCCCC-SSSS------------------CCTTCTTCCEEECCSSC-----------
T ss_pred ccChhhcCCc----ccCCEEEccCCcccc-cccc------------------ccCCCCCCCEEeCCCCc-----------
Confidence 5545555544 689999999886321 1100 01256677777776541
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhh-HHHHHhcCCC-CcEeecccccC-----------cccE
Q 039096 174 DGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSA-SEALKSKCVN-LKGLKLGQLHS-----------WLES 240 (554)
Q Consensus 174 ~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~-l~~l~~~~~~-L~~L~l~~~~~-----------~L~~ 240 (554)
++...+......+++|++|+++++ .+++..+. +..+ .+++. +..|+++++.- +|+.
T Consensus 140 ---------l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l-~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~ 208 (606)
T 3vq2_A 140 ---------IHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFL-RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208 (606)
T ss_dssp ---------CCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHH-HHCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred ---------ccceechHhHhhcCCCCEEEccCC-cceecChhhhhhh-hccccccceeeccCCCcceeCcccccCceeee
Confidence 111011112345667777777664 34433211 2233 23332 44555554321 5666
Q ss_pred EEecCCCCCCHHHHHHHHhcC--------------------------------------------------------CCC
Q 039096 241 LSIKNCGDLSDMSLVAIGRGC--------------------------------------------------------SKL 264 (554)
Q Consensus 241 L~l~~~~~l~~~~l~~l~~~~--------------------------------------------------------~~L 264 (554)
|++++|. +++.........+ ++|
T Consensus 209 L~L~~n~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L 287 (606)
T 3vq2_A 209 LTLRGNF-NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287 (606)
T ss_dssp EEEESCC-SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTC
T ss_pred eeccCCc-cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCC
Confidence 6666654 3332222222222 333
Q ss_pred cEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHH-----------------HHHhhcCCCccEEEeeeee
Q 039096 265 VKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASC-----------------KALKPIRDRIQKLHIDCVW 327 (554)
Q Consensus 265 ~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l-----------------~~l~~~~~~L~~L~l~~~~ 327 (554)
+.|+++++. ++... .+ ..+ ++|++|++++|... ....+ ......+++|++|+++.+.
T Consensus 288 ~~L~l~~~~-~~~l~--~l-~~~-~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~ 361 (606)
T 3vq2_A 288 SAMSLAGVS-IKYLE--DV-PKH-FKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNA 361 (606)
T ss_dssp SEEEEESCC-CCCCC--CC-CTT-CCCSEEEEESCCCS-SCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSC
T ss_pred CEEEecCcc-chhhh--hc-ccc-ccCCEEEcccccCc-ccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCc
Confidence 333333333 11100 00 111 34555555554321 11100 0011134555555554443
Q ss_pred ccccc--hhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccch-
Q 039096 328 DGIRS--SEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWG- 404 (554)
Q Consensus 328 ~~~~~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~- 404 (554)
+.... ...+ ..+++|++|++++|. ++.++ ..+..+++|+.|+++ +| .+. ...
T Consensus 362 l~~~~~~~~~~-----------~~~~~L~~L~L~~n~---l~~~~-~~~~~l~~L~~L~l~---~n----~l~---~~~~ 416 (606)
T 3vq2_A 362 LSFSGCCSYSD-----------LGTNSLRHLDLSFNG---AIIMS-ANFMGLEELQHLDFQ---HS----TLK---RVTE 416 (606)
T ss_dssp EEEEEECCHHH-----------HCCSCCCEEECCSCS---EEEEC-CCCTTCTTCCEEECT---TS----EEE---STTT
T ss_pred cCCCcchhhhh-----------ccCCcccEeECCCCc---cccch-hhccCCCCCCeeECC---CC----ccC---CccC
Confidence 32221 2222 567788888887665 44544 456778888888887 55 222 111
Q ss_pred hhhhccCCCccceeeecCCcccccccccccCCCCchhhhHhh--------cccccc-eecccccCCCCCcCCcchhhhhH
Q 039096 405 LSCLTRYPRLSKLVLDFGDTDGHNQAAPYKAADLSTWDRFVL--------NGIGNL-ILKELDYWPAKDPNASQRSLSRL 475 (554)
Q Consensus 405 l~~l~~~~~L~~L~l~c~~~~~~~~~~~~~~~~L~~l~~~~l--------~~~~~l-~L~~l~~~~~~~~~~~~~~~~lp 475 (554)
...+..+++|+.|+++.+.+++.....+..+++|..++.... ..++.+ .|+.++.... ......|
T Consensus 417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n------~l~~~~~ 490 (606)
T 3vq2_A 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC------QLEQISW 490 (606)
T ss_dssp TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS------CCCEECT
T ss_pred hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC------cCCccCh
Confidence 135566889999999977777766555566666655543221 112222 3333333222 2212224
Q ss_pred HHHHHHhccccceeeeccchhhHHHHhhhcCCCCCcccccccccccCCC
Q 039096 476 AAALISNCITLRKVFVHCTAREHFMSMLISPTPNPKKARDAQIKLDYYP 524 (554)
Q Consensus 476 ~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 524 (554)
.. +.++++|+.|+++++............+++ |+.|+++++...
T Consensus 491 ~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~---L~~L~l~~N~l~ 534 (606)
T 3vq2_A 491 GV--FDTLHRLQLLNMSHNNLLFLDSSHYNQLYS---LSTLDCSFNRIE 534 (606)
T ss_dssp TT--TTTCTTCCEEECCSSCCSCEEGGGTTTCTT---CCEEECTTSCCC
T ss_pred hh--hcccccCCEEECCCCcCCCcCHHHccCCCc---CCEEECCCCcCc
Confidence 44 778999999999976655443333344788 999999998763
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=3.9e-22 Score=215.75 Aligned_cols=430 Identities=15% Similarity=0.088 Sum_probs=231.8
Q ss_pred eeEEEEecCC-Cch-hchhhcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccH-HHHHhcCCCC
Q 039096 5 RTSITLRGNA-CNL-NIVPLCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEF-VPLLKHCKCL 81 (554)
Q Consensus 5 r~~L~l~~~~-~~l-~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l-~~~~~~~~~L 81 (554)
-++|++++|. ..+ ......+++|++|+++++ .+..... ..+. .+.+|++|+++++. -..+ ...+..+++|
T Consensus 59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~~-~l~~L~~L~L~~n~---i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAE--TALS-GPKALKHLFFIQTG---ISSIDFIPLHNQKTL 131 (606)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECT--TTTS-SCTTCCEEECTTSC---CSCGGGSCCTTCTTC
T ss_pred ceEEECCCCccceeChhhccCccccCeeeCCCC-cccccCh--hhhc-ccccccEeeccccC---cccCCcchhccCCcc
Confidence 3678888884 111 122346899999999998 4443322 3444 89999999998442 1111 1125789999
Q ss_pred cEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChH--hhH----------HHHhcc
Q 039096 82 TSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLN--KWA----------VSIATN 149 (554)
Q Consensus 82 ~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~--~L~----------~~~~~~ 149 (554)
++|++++|.......|... . +++|++|++++|... ++.... +..+++|+ .|. .... .
T Consensus 132 ~~L~L~~n~l~~~~~~~~~-~----l~~L~~L~L~~n~l~-~~~~~~----~~~l~~L~~l~L~l~~n~l~~~~~~~~-~ 200 (606)
T 3t6q_A 132 ESLYLGSNHISSIKLPKGF-P----TEKLKVLDFQNNAIH-YLSKED----MSSLQQATNLSLNLNGNDIAGIEPGAF-D 200 (606)
T ss_dssp CEEECCSSCCCCCCCCTTC-C----CTTCCEEECCSSCCC-EECHHH----HHTTTTCCSEEEECTTCCCCEECTTTT-T
T ss_pred cEEECCCCcccccCccccc-C----CcccCEEEcccCccc-ccChhh----hhhhcccceeEEecCCCccCccChhHh-h
Confidence 9999998843222333322 2 479999999988622 222222 24566666 332 1111 2
Q ss_pred CCCCCEEEeccccccccc--------------------CCCCCCC----C-----Ccc---ccCCCCHHHHHHHHhCCCC
Q 039096 150 CPRLTLLHLAETSTLAAM--------------------RGDPDDD----G-----FTA---EDARISEEGLIQLFSGLPL 197 (554)
Q Consensus 150 ~~~L~~L~l~~c~~l~~~--------------------~~~~~~~----g-----~~~---~~~~i~~~~l~~l~~~~~~ 197 (554)
..+|++|++++|..+... ....... + +.. ..+.++.... .....+++
T Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~-~~~~~l~~ 279 (606)
T 3t6q_A 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS-NTFHCFSG 279 (606)
T ss_dssp TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT-TTTTTCTT
T ss_pred hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH-HHhccccC
Confidence 244556665554311000 0000000 0 000 0112221111 11246788
Q ss_pred CcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccC------------cccEEEecCCCCCCHHHHHHHHhcCCCCc
Q 039096 198 LEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHS------------WLESLSIKNCGDLSDMSLVAIGRGCSKLV 265 (554)
Q Consensus 198 L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~------------~L~~L~l~~~~~l~~~~l~~l~~~~~~L~ 265 (554)
|++|+++++ .++.... .+ ..+++|++|+++++.- +|++|++++|. +...........+++|+
T Consensus 280 L~~L~l~~n-~l~~lp~---~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 280 LQELDLTAT-HLSELPS---GL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT-KRLELGTGCLENLENLR 353 (606)
T ss_dssp CSEEECTTS-CCSCCCS---SC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS-SCCBCCSSTTTTCTTCC
T ss_pred CCEEeccCC-ccCCCCh---hh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC-cccccchhhhhccCcCC
Confidence 888888775 4653321 33 5678888888876531 78888888875 22111111123478888
Q ss_pred EEEecCCCCCCHHHH-HHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchh-hhccCCccc
Q 039096 266 KFEVEGCKNITVDGL-RTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSE-AKATGNTST 343 (554)
Q Consensus 266 ~L~L~~c~~i~~~~~-~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~ 343 (554)
+|++++|. ++.... ......+ ++|++|++++|.... . .......+++|++|+++.+.+...... .+
T Consensus 354 ~L~l~~n~-l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~-~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------- 421 (606)
T 3t6q_A 354 ELDLSHDD-IETSDCCNLQLRNL-SHLQSLNLSYNEPLS-L--KTEAFKECPQLELLDLAFTRLKVKDAQSPF------- 421 (606)
T ss_dssp EEECCSSC-CCEEEESTTTTTTC-TTCCEEECCSCSCEE-E--CTTTTTTCTTCSEEECTTCCEECCTTCCTT-------
T ss_pred EEECCCCc-cccccCcchhcccC-CCCCEEECCCCcCCc-C--CHHHhcCCccCCeEECCCCcCCCcccchhh-------
Confidence 88888877 442210 1111233 788888888875331 1 111223467788888866654433322 23
Q ss_pred hhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCC
Q 039096 344 IFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGD 423 (554)
Q Consensus 344 ~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~ 423 (554)
..+++|++|++++|. ++......+..+++|++|+++ +| .+..........+..+++|+.|+++.+.
T Consensus 422 ----~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~L~---~n----~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 422 ----QNLHLLKVLNLSHSL---LDISSEQLFDGLPALQHLNLQ---GN----HFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp ----TTCTTCCEEECTTCC---CBTTCTTTTTTCTTCCEEECT---TC----BCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred ----hCcccCCEEECCCCc---cCCcCHHHHhCCCCCCEEECC---CC----CCCccccccchhhccCCCccEEECCCCc
Confidence 567888888887665 555555656777888888886 55 2220000111345567788888888666
Q ss_pred cccccccccccCCCCchhhhHh-------hcccccc-eecccccCCCCCcCCcchhhhhHHHHHHHhccccceeeeccc
Q 039096 424 TDGHNQAAPYKAADLSTWDRFV-------LNGIGNL-ILKELDYWPAKDPNASQRSLSRLAAALISNCITLRKVFVHCT 494 (554)
Q Consensus 424 ~~~~~~~~~~~~~~L~~l~~~~-------l~~~~~l-~L~~l~~~~~~~~~~~~~~~~lp~~~~l~~~~~L~~L~i~~~ 494 (554)
+++.....+..++.|..++... ...+..+ .+ .++... |......|.. +..+++|+.|++++.
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~------N~l~~~~~~~--~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS------NHISIILPSL--LPILSQQRTINLRQN 557 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS------SCCCCCCGGG--HHHHHTSSEEECTTC
T ss_pred cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC------CcccccCHhh--cccCCCCCEEeCCCC
Confidence 7766555555555555443221 1112222 22 232222 2222222334 778889999999843
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=9.1e-21 Score=197.64 Aligned_cols=366 Identities=13% Similarity=0.080 Sum_probs=215.4
Q ss_pred chhchhhcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCCcEEEecCCCCCCCC
Q 039096 16 NLNIVPLCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCLTSVDLSSFYHWTED 95 (554)
Q Consensus 16 ~l~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~ 95 (554)
.+..+|.-.++|++|+++++ .+..... ..+. .+.+|++|+++++.. ........+..+++|++|++++| .+...
T Consensus 21 ~l~~lp~l~~~l~~L~Ls~n-~i~~~~~--~~~~-~l~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~ 94 (455)
T 3v47_A 21 GLHQVPELPAHVNYVDLSLN-SIAELNE--TSFS-RLQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYN-QFLQL 94 (455)
T ss_dssp CCSSCCCCCTTCCEEECCSS-CCCEECT--TTTS-SCTTCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTC-TTCEE
T ss_pred CcccCCCCCCccCEEEecCC-ccCcCCh--hHhc-cCccccEEECcCCcc-cceECcccccccccCCEEeCCCC-ccCcc
Confidence 46677775589999999998 4543322 4444 788888888883321 00111233667888888888887 34444
Q ss_pred hhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCC
Q 039096 96 LPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDG 175 (554)
Q Consensus 96 ~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g 175 (554)
.|..+..+ ++|++|++++|. ++...+.. .....+++|++|++++|.
T Consensus 95 ~~~~~~~l----~~L~~L~L~~n~----l~~~~~~~-------------~~~~~l~~L~~L~L~~n~------------- 140 (455)
T 3v47_A 95 ETGAFNGL----ANLEVLTLTQCN----LDGAVLSG-------------NFFKPLTSLEMLVLRDNN------------- 140 (455)
T ss_dssp CTTTTTTC----TTCCEEECTTSC----CBTHHHHS-------------STTTTCTTCCEEECCSSB-------------
T ss_pred ChhhccCc----ccCCEEeCCCCC----CCccccCc-------------ccccCcccCCEEECCCCc-------------
Confidence 44444444 588888888876 33221110 012357788888887651
Q ss_pred CccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcC--CCCcEeecccccCcccEEEecCCCCCCHHH
Q 039096 176 FTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKC--VNLKGLKLGQLHSWLESLSIKNCGDLSDMS 253 (554)
Q Consensus 176 ~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~--~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~ 253 (554)
++......+...+++|++|+++++. +++..+. .+ ..+ ++|+ .|+++++. +.+..
T Consensus 141 -------l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--~l-~~l~~~~L~------------~L~l~~n~-l~~~~ 196 (455)
T 3v47_A 141 -------IKKIQPASFFLNMRRFHVLDLTFNK-VKSICEE--DL-LNFQGKHFT------------LLRLSSIT-LQDMN 196 (455)
T ss_dssp -------CCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTT--TS-GGGTTCEEE------------EEECTTCB-CTTCS
T ss_pred -------cCccCcccccCCCCcccEEeCCCCc-ccccChh--hh-hcccccccc------------ccccccCc-ccccc
Confidence 1111111123567888888887753 6544321 22 122 3444 45555544 22211
Q ss_pred --------HHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhc-CCccEEEEeccCCCChhH---------HHHHHhhcC
Q 039096 254 --------LVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLR-ETLVVIKIYCCENLGAVA---------SCKALKPIR 315 (554)
Q Consensus 254 --------l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~-~~L~~L~l~~c~~~~~~~---------~l~~l~~~~ 315 (554)
...+ ..+++|++|++++|. +++.....+..... ++|+.|++++|....... ........+
T Consensus 197 ~~~~~~~~~~~~-~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (455)
T 3v47_A 197 EYWLGWEKCGNP-FKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274 (455)
T ss_dssp TTCTTHHHHCCT-TTTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTT
T ss_pred hhhccccccccc-cccceeeeEecCCCc-ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccc
Confidence 1111 125678888888887 67666555554321 578888887764332110 000011124
Q ss_pred CCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCC
Q 039096 316 DRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKP 395 (554)
Q Consensus 316 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~ 395 (554)
++|++|+++.+.+.......+ ..+++|++|++++|. ++++....+..+++|++|+++ +|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~-----------~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls---~N---- 333 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVF-----------SHFTDLEQLTLAQNE---INKIDDNAFWGLTHLLKLNLS---QN---- 333 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTT-----------TTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECC---SS----
T ss_pred cCceEEEecCccccccchhhc-----------ccCCCCCEEECCCCc---ccccChhHhcCcccCCEEECC---CC----
Confidence 679999998776665555555 788999999998766 777777778889999999998 66
Q ss_pred CCCccccchhhhhccCCCccceeeecCCcccccccccccCCCCchhhhHhhcccccceecccccCCCCCcCCcchhhhhH
Q 039096 396 LLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQAAPYKAADLSTWDRFVLNGIGNLILKELDYWPAKDPNASQRSLSRL 475 (554)
Q Consensus 396 ~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~l~L~~l~~~~~~~~~~~~~~~~lp 475 (554)
.++ ......+..+++|+.|+++.|.+++.....+..+++ |+.++........+ |
T Consensus 334 ~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~----------------L~~L~L~~N~l~~~-------~ 387 (455)
T 3v47_A 334 FLG---SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN----------------LKELALDTNQLKSV-------P 387 (455)
T ss_dssp CCC---EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT----------------CCEEECCSSCCSCC-------C
T ss_pred ccC---CcChhHhcCcccCCEEECCCCcccccChhhcccccc----------------ccEEECCCCccccC-------C
Confidence 333 333356677899999999977787665444333332 22222222211111 2
Q ss_pred HHHHHHhccccceeeeccch
Q 039096 476 AAALISNCITLRKVFVHCTA 495 (554)
Q Consensus 476 ~~~~l~~~~~L~~L~i~~~~ 495 (554)
.. .+..+++|+.|++++..
T Consensus 388 ~~-~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 388 DG-IFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TT-TTTTCTTCCEEECCSSC
T ss_pred Hh-HhccCCcccEEEccCCC
Confidence 21 15678899999998543
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=5e-21 Score=204.56 Aligned_cols=92 Identities=18% Similarity=0.077 Sum_probs=57.5
Q ss_pred chhchhhc-CCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHH-HHHhcCCCCcEEEecCCCCCC
Q 039096 16 NLNIVPLC-FDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFV-PLLKHCKCLTSVDLSSFYHWT 93 (554)
Q Consensus 16 ~l~~l~~~-~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~ 93 (554)
.+..+|.. +++|++|+++++ .+..... ..+. .+++|++|+++++. -..+. ..+..+++|++|++++| .+.
T Consensus 16 ~l~~ip~~~~~~L~~L~Ls~n-~l~~~~~--~~~~-~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n-~l~ 87 (549)
T 2z81_A 16 SFTSIPSGLTAAMKSLDLSFN-KITYIGH--GDLR-ACANLQVLILKSSR---INTIEGDAFYSLGSLEHLDLSDN-HLS 87 (549)
T ss_dssp CCSSCCSCCCTTCCEEECCSS-CCCEECS--STTS-SCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTS-CCC
T ss_pred ccccccccCCCCccEEECcCC-ccCccCh--hhhh-cCCcccEEECCCCC---cCccChhhccccccCCEEECCCC-ccC
Confidence 45666664 467888888877 4433222 3344 77888888887432 11111 23567788888888877 445
Q ss_pred CChhHHHhhcCcCCCCccEEEcCCCC
Q 039096 94 EDLPPVLKAYPDKSAILTCLNLLKTS 119 (554)
Q Consensus 94 ~~~~~~l~~l~~~~~~L~~L~L~~~~ 119 (554)
+..+..+..+ ++|++|++++|.
T Consensus 88 ~~~~~~~~~l----~~L~~L~Ls~n~ 109 (549)
T 2z81_A 88 SLSSSWFGPL----SSLKYLNLMGNP 109 (549)
T ss_dssp SCCHHHHTTC----TTCCEEECTTCC
T ss_pred ccCHHHhccC----CCCcEEECCCCc
Confidence 5555555555 588888888776
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=6e-21 Score=209.35 Aligned_cols=435 Identities=13% Similarity=0.028 Sum_probs=207.6
Q ss_pred chhchhhcC-CCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCCcEEEecCCCCCCC
Q 039096 16 NLNIVPLCF-DAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCLTSVDLSSFYHWTE 94 (554)
Q Consensus 16 ~l~~l~~~~-~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~ 94 (554)
.+..+|..+ +++++|+++++ .+..-.. ..+. .+.+|++++++++.. . ......+..+++|++|++++| .+..
T Consensus 15 ~L~~ip~~~~~~l~~L~Ls~n-~l~~~~~--~~~~-~l~~L~~L~Ls~n~l-~-~~~~~~~~~l~~L~~L~L~~n-~l~~ 87 (680)
T 1ziw_A 15 KLTQVPDDLPTNITVLNLTHN-QLRRLPA--ANFT-RYSQLTSLDVGFNTI-S-KLEPELCQKLPMLKVLNLQHN-ELSQ 87 (680)
T ss_dssp CCSSCCSCSCTTCSEEECCSS-CCCCCCG--GGGG-GGTTCSEEECCSSCC-C-CCCTTHHHHCTTCCEEECCSS-CCCC
T ss_pred CccccccccCCCCcEEECCCC-CCCCcCH--HHHh-CCCcCcEEECCCCcc-C-ccCHHHHhcccCcCEEECCCC-ccCc
Confidence 355666643 57888888877 3332211 2344 677888888874321 1 111234667888888888876 3333
Q ss_pred ChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhH----------HHHhccCCCCCEEEecccccc
Q 039096 95 DLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWA----------VSIATNCPRLTLLHLAETSTL 164 (554)
Q Consensus 95 ~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~----------~~~~~~~~~L~~L~l~~c~~l 164 (554)
..+..+.. +++|++|++++|... ++.... +.++++|+.|. ......+++|++|++++|
T Consensus 88 l~~~~~~~----l~~L~~L~L~~n~l~-~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--- 155 (680)
T 1ziw_A 88 LSDKTFAF----CTNLTELHLMSNSIQ-KIKNNP----FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN--- 155 (680)
T ss_dssp CCTTTTTT----CTTCSEEECCSSCCC-CCCSCT----TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS---
T ss_pred cChhhhcc----CCCCCEEECCCCccC-ccChhH----ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC---
Confidence 22222333 368888888877531 121111 12344444443 011124555666666543
Q ss_pred cccCCCCCCCCCccccCCCCHHHHHHH-HhCCCCCcEEEecCCCCCCCchhh-H---------------------HHHH-
Q 039096 165 AAMRGDPDDDGFTAEDARISEEGLIQL-FSGLPLLEELALDVGKNVRDSGSA-S---------------------EALK- 220 (554)
Q Consensus 165 ~~~~~~~~~~g~~~~~~~i~~~~l~~l-~~~~~~L~~L~L~~c~~l~~~~~~-l---------------------~~l~- 220 (554)
.++......+ ...+++|++|+++++ .+++..+. + ..+.
T Consensus 156 -----------------~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 217 (680)
T 1ziw_A 156 -----------------KIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217 (680)
T ss_dssp -----------------CCCCBCHHHHGGGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHH
T ss_pred -----------------cccccCHHHhhccccccccEEECCCC-cccccChhhhhhhhhhhhhhccccccChhhHHHHHH
Confidence 1111111111 123467777777664 34433211 0 0000
Q ss_pred -hcCCCCcEeecccccC--------------cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHH
Q 039096 221 -SKCVNLKGLKLGQLHS--------------WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLAS 285 (554)
Q Consensus 221 -~~~~~L~~L~l~~~~~--------------~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~ 285 (554)
-..++|+.|+++++.- +|+.|++++|. ++......+ ..+++|+.|++++|. +++.....+ .
T Consensus 218 ~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~-~ 293 (680)
T 1ziw_A 218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSF-AWLPQLEYFFLEYNN-IQHLFSHSL-H 293 (680)
T ss_dssp HHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTTTT-TTCTTCCEEECCSCC-BSEECTTTT-T
T ss_pred HhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC-cCccCcccc-cCcccccEeeCCCCc-cCccChhhh-c
Confidence 1235566666655421 27777777765 443322223 236777777777765 332111111 1
Q ss_pred HhcCCccEEEEeccCCCChhHHHHH-------HhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEe
Q 039096 286 LLRETLVVIKIYCCENLGAVASCKA-------LKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSF 358 (554)
Q Consensus 286 ~~~~~L~~L~l~~c~~~~~~~~l~~-------l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 358 (554)
.+ ++|+.|++.++.... ...+.. ....+++|++|+++.+.+.......+ ..+++|++|++
T Consensus 294 ~l-~~L~~L~L~~~~~~~-~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----------~~l~~L~~L~L 360 (680)
T 1ziw_A 294 GL-FNVRYLNLKRSFTKQ-SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF-----------TGLINLKYLSL 360 (680)
T ss_dssp TC-TTCCEEECTTCBCCC-------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT-----------TTCTTCCEEEC
T ss_pred CC-CCccEEeccchhhhc-ccccccccccChhhcccCCCCCEEECCCCccCCCChhHh-----------ccccCCcEEEC
Confidence 22 566666665542210 000000 11235667777765554444333333 44555555555
Q ss_pred eccc-------------------------CCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCC
Q 039096 359 WIEV-------------------------GELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPR 413 (554)
Q Consensus 359 ~~c~-------------------------~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~ 413 (554)
++|. ++.++.+....+..+++|+.|+++ ++.....+. ...+..+++
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~---~N~l~~~~~------~~~~~~l~~ 431 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG---LNEIGQELT------GQEWRGLEN 431 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC---SSCCEEECC------SGGGTTCTT
T ss_pred CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC---CCcCccccC------cccccCccc
Confidence 4332 011444444445667777777776 442111111 124455777
Q ss_pred ccceeeecCCcccccccccccCCCCchhhhHhh---------cccccc-eecccccCCCCCcCCcchhhhhHHHHHHHhc
Q 039096 414 LSKLVLDFGDTDGHNQAAPYKAADLSTWDRFVL---------NGIGNL-ILKELDYWPAKDPNASQRSLSRLAAALISNC 483 (554)
Q Consensus 414 L~~L~l~c~~~~~~~~~~~~~~~~L~~l~~~~l---------~~~~~l-~L~~l~~~~~~~~~~~~~~~~lp~~~~l~~~ 483 (554)
|+.|+++.+.+++........++.|..++.... ..+..+ +|+.++........+ .+.. +.++
T Consensus 432 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i------~~~~--~~~l 503 (680)
T 1ziw_A 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI------NDDM--LEGL 503 (680)
T ss_dssp CCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCC------CTTT--TTTC
T ss_pred ccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcC------Chhh--hccc
Confidence 777777755555554444444444444332211 111222 333333322211111 1222 6788
Q ss_pred cccceeeeccchhhHHHHh--------hhcCCCCCcccccccccccCCC
Q 039096 484 ITLRKVFVHCTAREHFMSM--------LISPTPNPKKARDAQIKLDYYP 524 (554)
Q Consensus 484 ~~L~~L~i~~~~~~~~~~~--------~~~~~~~~~~L~~l~l~~~~~~ 524 (554)
++|+.|++++.....+... ....+++ |+.|++.++...
T Consensus 504 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~---L~~L~L~~N~l~ 549 (680)
T 1ziw_A 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH---LHILNLESNGFD 549 (680)
T ss_dssp TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTT---CCEEECCSSCCC
T ss_pred cccCEEeCCCCCccccchhhccCCcchhhcCCCC---CCEEECCCCCCC
Confidence 8899999886554433111 1233677 999999887653
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=8.4e-21 Score=208.18 Aligned_cols=104 Identities=15% Similarity=0.053 Sum_probs=65.8
Q ss_pred eEEEEecCCCchhchh----hcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCC
Q 039096 6 TSITLRGNACNLNIVP----LCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCL 81 (554)
Q Consensus 6 ~~L~l~~~~~~l~~l~----~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L 81 (554)
++|+++++. +..+| ..+++|++|+++++ .+..-.. ..+. .+.+|++++++++.. .. .....+..+++|
T Consensus 76 ~~L~L~~n~--l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~-~l~~L~~L~Ls~n~l-~~-~~~~~~~~l~~L 147 (680)
T 1ziw_A 76 KVLNLQHNE--LSQLSDKTFAFCTNLTELHLMSN-SIQKIKN--NPFV-KQKNLITLDLSHNGL-SS-TKLGTQVQLENL 147 (680)
T ss_dssp CEEECCSSC--CCCCCTTTTTTCTTCSEEECCSS-CCCCCCS--CTTT-TCTTCCEEECCSSCC-SC-CCCCSSSCCTTC
T ss_pred CEEECCCCc--cCccChhhhccCCCCCEEECCCC-ccCccCh--hHcc-ccCCCCEEECCCCcc-cc-cCchhhcccccC
Confidence 678888874 33344 36789999999988 4432221 2344 889999999984421 10 011224578899
Q ss_pred cEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCC
Q 039096 82 TSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSF 120 (554)
Q Consensus 82 ~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 120 (554)
++|++++| .+....+..+..+ .+++|++|++++|..
T Consensus 148 ~~L~L~~n-~l~~~~~~~~~~~--~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 148 QELLLSNN-KIQALKSEELDIF--ANSSLKKLELSSNQI 183 (680)
T ss_dssp CEEECCSS-CCCCBCHHHHGGG--TTCEESEEECTTCCC
T ss_pred CEEEccCC-cccccCHHHhhcc--ccccccEEECCCCcc
Confidence 99999887 3444444444322 236899999988753
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=7.1e-21 Score=204.31 Aligned_cols=92 Identities=18% Similarity=-0.004 Sum_probs=58.8
Q ss_pred chhchhhcC-CCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccH-HHHHhcCCCCcEEEecCCCCCC
Q 039096 16 NLNIVPLCF-DAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEF-VPLLKHCKCLTSVDLSSFYHWT 93 (554)
Q Consensus 16 ~l~~l~~~~-~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~ 93 (554)
.+..+|..+ ++++.|+++++ .+..-.. ..+. .+++|++++++++. -..+ ...+..+++|++|++++|. +.
T Consensus 18 ~l~~ip~~l~~~l~~L~Ls~n-~l~~~~~--~~~~-~l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~~n~-l~ 89 (570)
T 2z63_A 18 NFYKIPDNLPFSTKNLDLSFN-PLRHLGS--YSFF-SFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNP-IQ 89 (570)
T ss_dssp CCSSCCSSSCSSCCEEECCSC-CCCEECT--TTTT-TCSSCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTCC-CC
T ss_pred CccccCCCccccccEEEccCC-ccCccCh--hHhh-CCCCceEEECCCCc---CCccCcccccCchhCCEEeCcCCc-CC
Confidence 466777754 47899999888 4433222 3444 78889999988442 1112 2236678899999998873 33
Q ss_pred CChhHHHhhcCcCCCCccEEEcCCCC
Q 039096 94 EDLPPVLKAYPDKSAILTCLNLLKTS 119 (554)
Q Consensus 94 ~~~~~~l~~l~~~~~~L~~L~L~~~~ 119 (554)
...+..+.. +++|++|++++|.
T Consensus 90 ~~~~~~~~~----l~~L~~L~L~~n~ 111 (570)
T 2z63_A 90 SLALGAFSG----LSSLQKLVAVETN 111 (570)
T ss_dssp EECTTTTTT----CTTCCEEECTTSC
T ss_pred ccCHhhhcC----ccccccccccccc
Confidence 333333443 3689999998875
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=4.1e-19 Score=189.68 Aligned_cols=103 Identities=13% Similarity=-0.056 Sum_probs=66.1
Q ss_pred eeEEEEecCCCchhch----hhcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCC
Q 039096 5 RTSITLRGNACNLNIV----PLCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKC 80 (554)
Q Consensus 5 r~~L~l~~~~~~l~~l----~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~ 80 (554)
-++|+++++. +..+ ...+++|++|+++++ .+..... ..+. .+.+|++|+++++.. . ......++.+++
T Consensus 28 L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~--~~~~-~l~~L~~L~Ls~n~l-~-~~~~~~~~~l~~ 99 (549)
T 2z81_A 28 MKSLDLSFNK--ITYIGHGDLRACANLQVLILKSS-RINTIEG--DAFY-SLGSLEHLDLSDNHL-S-SLSSSWFGPLSS 99 (549)
T ss_dssp CCEEECCSSC--CCEECSSTTSSCTTCCEEECTTS-CCCEECT--TTTT-TCTTCCEEECTTSCC-C-SCCHHHHTTCTT
T ss_pred ccEEECcCCc--cCccChhhhhcCCcccEEECCCC-CcCccCh--hhcc-ccccCCEEECCCCcc-C-ccCHHHhccCCC
Confidence 4688888884 2222 246889999999988 4543322 3444 889999999984421 1 112234778999
Q ss_pred CcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCC
Q 039096 81 LTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTS 119 (554)
Q Consensus 81 L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 119 (554)
|++|++++|.......|..+.. +++|++|++++|.
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~----l~~L~~L~L~~n~ 134 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPN----LTNLQTLRIGNVE 134 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTT----CTTCCEEEEEESS
T ss_pred CcEEECCCCcccccchhhhhhc----cCCccEEECCCCc
Confidence 9999999874322133333333 3588888888775
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.80 E-value=1.8e-20 Score=203.19 Aligned_cols=351 Identities=13% Similarity=0.087 Sum_probs=210.8
Q ss_pred HHHHHhcCCCCcEEEecCCCCCCCC-----------------hhHHHh--hcCcCCCCccEEEcCCCCCCCCCCHHHHHH
Q 039096 71 FVPLLKHCKCLTSVDLSSFYHWTED-----------------LPPVLK--AYPDKSAILTCLNLLKTSFSEDYRPQEIIE 131 (554)
Q Consensus 71 l~~~~~~~~~L~~L~L~~~~~~~~~-----------------~~~~l~--~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~ 131 (554)
+...++++++|++|+|++|. +++. +|..+. .+ ++|++|++++|.....+.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l----~~L~~L~L~~n~l~~~~p------ 266 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNL----KDLTDVEVYNCPNLTKLP------ 266 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC----TTCCEEEEECCTTCSSCC------
T ss_pred CCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhccc----CCCCEEEecCCcCCccCh------
Confidence 44457788999999998874 4442 555444 44 689999998876332221
Q ss_pred HHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccCCCCH-HHHHHHH-----hCCCCCcEEEecC
Q 039096 132 IIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISE-EGLIQLF-----SGLPLLEELALDV 205 (554)
Q Consensus 132 l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~-~~l~~l~-----~~~~~L~~L~L~~ 205 (554)
.. ...+++|++|++++| ..+++ .....+. ..+++|++|++++
T Consensus 267 ------------~~-l~~l~~L~~L~Ls~n-------------------~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 267 ------------TF-LKALPEMQLINVACN-------------------RGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp ------------TT-TTTCSSCCEEECTTC-------------------TTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred ------------HH-HhcCCCCCEEECcCC-------------------CCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 11 126788999999764 11454 2222222 2348999999988
Q ss_pred CCCCCCchhhHHHHHhcCCCCcEeecccccC-----------cccEEEecCCCCCCHHHHHHHHhcCCC-CcEEEecCCC
Q 039096 206 GKNVRDSGSASEALKSKCVNLKGLKLGQLHS-----------WLESLSIKNCGDLSDMSLVAIGRGCSK-LVKFEVEGCK 273 (554)
Q Consensus 206 c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~-----------~L~~L~l~~~~~l~~~~l~~l~~~~~~-L~~L~L~~c~ 273 (554)
|. ++... ....+ .++++|+.|+++++.- +|++|++++|. ++ .+......+++ |+.|++++|.
T Consensus 315 n~-l~~ip-~~~~l-~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 315 NN-LKTFP-VETSL-QKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp SC-CSSCC-CHHHH-TTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE-EE--ECCTTSEEECTTCCEEECCSSC
T ss_pred Cc-CCccC-chhhh-ccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc-cc--cccHhhhhhcccCcEEEccCCc
Confidence 54 65321 11245 7888999998877531 78889998886 44 11111234677 9999999987
Q ss_pred CCCHHHHHHHHHHh-cCCccEEEEeccCCCChhH-HHH---HHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhh
Q 039096 274 NITVDGLRTLASLL-RETLVVIKIYCCENLGAVA-SCK---ALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKT 348 (554)
Q Consensus 274 ~i~~~~~~~l~~~~-~~~L~~L~l~~c~~~~~~~-~l~---~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (554)
++ .+....... .++|++|++++|...+... .+. .....+++|++|+++.+.+.......+ .
T Consensus 389 -l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-----------~ 454 (636)
T 4eco_A 389 -LK--YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF-----------S 454 (636)
T ss_dssp -CS--SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHH-----------H
T ss_pred -Cc--ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHH-----------c
Confidence 55 222111111 0379999998886442110 010 000135689999998776653333333 5
Q ss_pred cCCCCceEEeecccCCccCccccccCc-------CCCCCCEEEEeeeCCCCCCCCCCccccchhhhhc--cCCCccceee
Q 039096 349 RWKSLKELSFWIEVGELLTPLPVAGLD-------ECPILENIRIKMEGDTREKPLLRDDKAWGLSCLT--RYPRLSKLVL 419 (554)
Q Consensus 349 ~~~~L~~L~l~~c~~~~~t~l~~~~l~-------~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~--~~~~L~~L~l 419 (554)
.+++|++|+++++. ++.++...+. ++++|+.|+++ +|... .++ ..+. .+++|+.|++
T Consensus 455 ~l~~L~~L~Ls~N~---l~~i~~~~~~~~~~~~~~l~~L~~L~Ls---~N~l~-~lp-------~~~~~~~l~~L~~L~L 520 (636)
T 4eco_A 455 TGSPLSSINLMGNM---LTEIPKNSLKDENENFKNTYLLTSIDLR---FNKLT-KLS-------DDFRATTLPYLVGIDL 520 (636)
T ss_dssp TTCCCSEEECCSSC---CSBCCSSSSEETTEECTTGGGCCEEECC---SSCCC-BCC-------GGGSTTTCTTCCEEEC
T ss_pred cCCCCCEEECCCCC---CCCcCHHHhccccccccccCCccEEECc---CCcCC-ccC-------hhhhhccCCCcCEEEC
Confidence 68999999998766 5655554332 33489999998 66333 222 2444 6899999999
Q ss_pred ecCCcccccccccccCCCCchhhhHhhcccccceecccccCCCCCcCCcchhhhhHHHHHHHhccccceeeeccchhhHH
Q 039096 420 DFGDTDGHNQAAPYKAADLSTWDRFVLNGIGNLILKELDYWPAKDPNASQRSLSRLAAALISNCITLRKVFVHCTAREHF 499 (554)
Q Consensus 420 ~c~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~l~L~~l~~~~~~~~~~~~~~~~lp~~~~l~~~~~L~~L~i~~~~~~~~ 499 (554)
+.|.+++. +..+..++ .|+.++.....+.+.+.....+|.. +.++++|+.|+++++....+
T Consensus 521 s~N~l~~i-p~~~~~l~----------------~L~~L~Ls~N~~ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~i 581 (636)
T 4eco_A 521 SYNSFSKF-PTQPLNSS----------------TLKGFGIRNQRDAQGNRTLREWPEG--ITLCPSLTQLQIGSNDIRKV 581 (636)
T ss_dssp CSSCCSSC-CCGGGGCS----------------SCCEEECCSCBCTTCCBCCCCCCTT--GGGCSSCCEEECCSSCCCBC
T ss_pred CCCCCCCc-ChhhhcCC----------------CCCEEECCCCcccccCcccccChHH--HhcCCCCCEEECCCCcCCcc
Confidence 98878762 22211222 2333333221111223333445666 78899999999997665444
Q ss_pred HHhhhcCCCCCcccccccccccCC
Q 039096 500 MSMLISPTPNPKKARDAQIKLDYY 523 (554)
Q Consensus 500 ~~~~~~~~~~~~~L~~l~l~~~~~ 523 (554)
+.. - .++ |+.|++.++..
T Consensus 582 p~~--~-~~~---L~~L~Ls~N~l 599 (636)
T 4eco_A 582 NEK--I-TPN---ISVLDIKDNPN 599 (636)
T ss_dssp CSC--C-CTT---CCEEECCSCTT
T ss_pred CHh--H-hCc---CCEEECcCCCC
Confidence 322 1 356 99999998864
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=193.13 Aligned_cols=97 Identities=16% Similarity=0.041 Sum_probs=65.8
Q ss_pred eEEEEecCCCchhchhhc-CCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccH-HHHHhcCCCCcE
Q 039096 6 TSITLRGNACNLNIVPLC-FDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEF-VPLLKHCKCLTS 83 (554)
Q Consensus 6 ~~L~l~~~~~~l~~l~~~-~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l-~~~~~~~~~L~~ 83 (554)
++|+++++. +..+|.. +++|++|+++++ .+..... ..+. .+.+|++|+++++. -..+ ...+..+++|++
T Consensus 3 ~~l~ls~n~--l~~ip~~~~~~L~~L~Ls~n-~i~~~~~--~~~~-~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~ 73 (520)
T 2z7x_B 3 FLVDRSKNG--LIHVPKDLSQKTTILNISQN-YISELWT--SDIL-SLSKLRILIISHNR---IQYLDISVFKFNQELEY 73 (520)
T ss_dssp CEEECTTSC--CSSCCCSCCTTCSEEECCSS-CCCCCCH--HHHT-TCTTCCEEECCSSC---CCEEEGGGGTTCTTCCE
T ss_pred ceEecCCCC--cccccccccccccEEECCCC-cccccCh--hhcc-ccccccEEecCCCc---cCCcChHHhhcccCCCE
Confidence 578888773 4567764 479999999998 4433221 2344 78899999998442 1122 234678899999
Q ss_pred EEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCC
Q 039096 84 VDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTS 119 (554)
Q Consensus 84 L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 119 (554)
|++++|. +. .+|.. .+++|++|++++|.
T Consensus 74 L~Ls~N~-l~-~lp~~------~l~~L~~L~L~~N~ 101 (520)
T 2z7x_B 74 LDLSHNK-LV-KISCH------PTVNLKHLDLSFNA 101 (520)
T ss_dssp EECCSSC-CC-EEECC------CCCCCSEEECCSSC
T ss_pred EecCCCc-ee-ecCcc------ccCCccEEeccCCc
Confidence 9999873 33 34433 34799999999887
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=1.3e-20 Score=211.29 Aligned_cols=299 Identities=16% Similarity=0.062 Sum_probs=163.9
Q ss_pred chhchhhcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccH-HHHHhcCCCCcEEEecCCCCCCC
Q 039096 16 NLNIVPLCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEF-VPLLKHCKCLTSVDLSSFYHWTE 94 (554)
Q Consensus 16 ~l~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~ 94 (554)
.+..+|...++++.|||+++ .+..... ..+. .+.+|++|+++++.. ...+ ...+.++++|++|+|++| .+..
T Consensus 15 ~L~~vP~lp~~l~~LdLs~N-~i~~i~~--~~~~-~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls~N-~l~~ 87 (844)
T 3j0a_A 15 NLTQVPQVLNTTERLLLSFN-YIRTVTA--SSFP-FLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLGSS-KIYF 87 (844)
T ss_dssp CSSCCCSSCTTCCEEEEESC-CCCEECS--SSCS-SCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECTTC-CCCE
T ss_pred CCCCCCCCCCCcCEEECCCC-cCCccCh--hHCc-ccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECCCC-cCcc
Confidence 46677875578999999988 4443322 4454 888999999984321 1112 334678899999999887 3444
Q ss_pred ChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCC
Q 039096 95 DLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDD 174 (554)
Q Consensus 95 ~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 174 (554)
..|..+..+ ++|++|++++|.....+.. ......+++|++|++++|.
T Consensus 88 ~~p~~~~~l----~~L~~L~Ls~n~l~~~~~~-----------------~~~~~~L~~L~~L~Ls~N~------------ 134 (844)
T 3j0a_A 88 LHPDAFQGL----FHLFELRLYFCGLSDAVLK-----------------DGYFRNLKALTRLDLSKNQ------------ 134 (844)
T ss_dssp ECTTSSCSC----SSCCCEECTTCCCSSCCST-----------------TCCCSSCSSCCEEEEESCC------------
T ss_pred cCHhHccCC----cccCEeeCcCCCCCccccc-----------------CccccccCCCCEEECCCCc------------
Confidence 445444444 6899999998863211100 0011256677777776641
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchh-hHHHHHhcCCCCcEeecccccC-----------------
Q 039096 175 GFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGS-ASEALKSKCVNLKGLKLGQLHS----------------- 236 (554)
Q Consensus 175 g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~-~l~~l~~~~~~L~~L~l~~~~~----------------- 236 (554)
++..........+++|++|+++++ .+++..+ .+..+ .. ++|+.|+++++.-
T Consensus 135 --------l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l-~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 135 --------IRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPL-QG-KTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203 (844)
T ss_dssp --------CCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHH-HH-CSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred --------ccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcccc-cC-CccceEECCCCccccccccchhhcCCcccc
Confidence 111111112345677777777663 3443221 12222 11 5666666554321
Q ss_pred -cccEEEecCCCCCCHHHHHHH------------------------------------Hh-cCCCCcEEEecCCCCCCHH
Q 039096 237 -WLESLSIKNCGDLSDMSLVAI------------------------------------GR-GCSKLVKFEVEGCKNITVD 278 (554)
Q Consensus 237 -~L~~L~l~~~~~l~~~~l~~l------------------------------------~~-~~~~L~~L~L~~c~~i~~~ 278 (554)
.|+.|++++|. +++.....+ .. ..++|+.|++++|. ++..
T Consensus 204 ~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~ 281 (844)
T 3j0a_A 204 MVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSL 281 (844)
T ss_dssp CCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEE
T ss_pred CceeEEecCCCc-CchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-cccc
Confidence 26666666653 221111111 00 02567788887776 3321
Q ss_pred HHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEe
Q 039096 279 GLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSF 358 (554)
Q Consensus 279 ~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 358 (554)
. ......+ ++|+.|++++|.... .. ......+++|++|+++.+.+.......+ ..+++|+.|++
T Consensus 282 ~-~~~~~~l-~~L~~L~L~~n~i~~-~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----------~~l~~L~~L~L 345 (844)
T 3j0a_A 282 N-SRVFETL-KDLKVLNLAYNKINK-IA--DEAFYGLDNLQVLNLSYNLLGELYSSNF-----------YGLPKVAYIDL 345 (844)
T ss_dssp C-SCCSSSC-CCCCEEEEESCCCCE-EC--TTTTTTCSSCCEEEEESCCCSCCCSCSC-----------SSCTTCCEEEC
T ss_pred C-hhhhhcC-CCCCEEECCCCcCCC-CC--hHHhcCCCCCCEEECCCCCCCccCHHHh-----------cCCCCCCEEEC
Confidence 1 0111223 678888887765331 11 1122346778888887666554444444 56777777777
Q ss_pred ecccCCccCccccccCcCCCCCCEEEEe
Q 039096 359 WIEVGELLTPLPVAGLDECPILENIRIK 386 (554)
Q Consensus 359 ~~c~~~~~t~l~~~~l~~~~~L~~L~l~ 386 (554)
+++. ++.+....+..+++|+.|+++
T Consensus 346 ~~N~---i~~~~~~~~~~l~~L~~L~Ls 370 (844)
T 3j0a_A 346 QKNH---IAIIQDQTFKFLEKLQTLDLR 370 (844)
T ss_dssp CSCC---CCCCCSSCSCSCCCCCEEEEE
T ss_pred CCCC---CCccChhhhcCCCCCCEEECC
Confidence 6554 555555556666777777776
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=8.4e-20 Score=202.07 Aligned_cols=351 Identities=13% Similarity=0.076 Sum_probs=205.5
Q ss_pred HHHHHhcCCCCcEEEecCCCCCCC-----------------ChhHHHh--hcCcCCCCccEEEcCCCCCCCCCCHHHHHH
Q 039096 71 FVPLLKHCKCLTSVDLSSFYHWTE-----------------DLPPVLK--AYPDKSAILTCLNLLKTSFSEDYRPQEIIE 131 (554)
Q Consensus 71 l~~~~~~~~~L~~L~L~~~~~~~~-----------------~~~~~l~--~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~ 131 (554)
+...++++++|++|+|++|. +++ .+|..+. .+ ++|++|+|++|.....+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L----~~L~~L~Ls~N~l~~~iP------ 508 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNL----KDLTDVELYNCPNMTQLP------ 508 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC----TTCCEEEEESCTTCCSCC------
T ss_pred hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccC----CCCCEEECcCCCCCccCh------
Confidence 33446778888888888873 444 1444433 33 588888888775332221
Q ss_pred HHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccCCCCH-H---HHHHHH---hCCCCCcEEEec
Q 039096 132 IIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISE-E---GLIQLF---SGLPLLEELALD 204 (554)
Q Consensus 132 l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~-~---~l~~l~---~~~~~L~~L~L~ 204 (554)
.. ...+++|+.|++++| ..++. . .+..+. ..+++|++|+++
T Consensus 509 ------------~~-l~~L~~L~~L~Ls~N-------------------~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 509 ------------DF-LYDLPELQSLNIACN-------------------RGISAAQLKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp ------------GG-GGGCSSCCEEECTTC-------------------TTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred ------------HH-HhCCCCCCEEECcCC-------------------CCcccccchHHHHhhhhcccccCCccEEEee
Confidence 11 126788888888764 11443 1 122221 245688888887
Q ss_pred CCCCCCCchhhHHHHHhcCCCCcEeeccccc----------CcccEEEecCCCCCCHHHHHHHHhcCCC-CcEEEecCCC
Q 039096 205 VGKNVRDSGSASEALKSKCVNLKGLKLGQLH----------SWLESLSIKNCGDLSDMSLVAIGRGCSK-LVKFEVEGCK 273 (554)
Q Consensus 205 ~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~----------~~L~~L~l~~~~~l~~~~l~~l~~~~~~-L~~L~L~~c~ 273 (554)
+|. ++... ....+ .++++|+.|+++++. .+|+.|++++|. ++ .+......+++ |+.|++++|.
T Consensus 557 ~N~-L~~ip-~~~~l-~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 557 YNN-LEEFP-ASASL-QKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp SSC-CCBCC-CHHHH-TTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSC-CS--CCCTTSCEECTTCCEEECCSSC
T ss_pred CCc-CCccC-Chhhh-hcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCc-cc--cchHHHhhccccCCEEECcCCC
Confidence 754 65321 11245 678888888887653 178888998887 55 12222234677 9999999887
Q ss_pred CCCHHHHHHHHHHhc-CCccEEEEeccCCCChhHHHH-HH-hhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcC
Q 039096 274 NITVDGLRTLASLLR-ETLVVIKIYCCENLGAVASCK-AL-KPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRW 350 (554)
Q Consensus 274 ~i~~~~~~~l~~~~~-~~L~~L~l~~c~~~~~~~~l~-~l-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (554)
++ .+........ ++|+.|++++|...+....+. .+ ...+++|+.|+++.+.+.......+ ..+
T Consensus 631 -L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~-----------~~l 696 (876)
T 4ecn_A 631 -LK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF-----------ATG 696 (876)
T ss_dssp -CC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH-----------HTT
T ss_pred -CC--cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHH-----------ccC
Confidence 55 2221111110 348999998886442111110 00 0124579999998776653332222 578
Q ss_pred CCCceEEeecccCCccCccccccCc-------CCCCCCEEEEeeeCCCCCCCCCCccccchhhhhc--cCCCccceeeec
Q 039096 351 KSLKELSFWIEVGELLTPLPVAGLD-------ECPILENIRIKMEGDTREKPLLRDDKAWGLSCLT--RYPRLSKLVLDF 421 (554)
Q Consensus 351 ~~L~~L~l~~c~~~~~t~l~~~~l~-------~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~--~~~~L~~L~l~c 421 (554)
++|+.|++++|. ++.++...+. +|++|+.|+++ +|+.. .++ ..+. .+++|+.|+++.
T Consensus 697 ~~L~~L~Ls~N~---L~~ip~~~~~~~~~~l~nl~~L~~L~Ls---~N~L~-~lp-------~~l~~~~l~~L~~L~Ls~ 762 (876)
T 4ecn_A 697 SPISTIILSNNL---MTSIPENSLKPKDGNYKNTYLLTTIDLR---FNKLT-SLS-------DDFRATTLPYLSNMDVSY 762 (876)
T ss_dssp CCCSEEECCSCC---CSCCCTTSSSCTTSCCTTGGGCCEEECC---SSCCC-CCC-------GGGSTTTCTTCCEEECCS
T ss_pred CCCCEEECCCCc---CCccChHHhccccccccccCCccEEECC---CCCCc-cch-------HHhhhccCCCcCEEEeCC
Confidence 999999998765 5555544332 34589999998 66433 222 2444 689999999998
Q ss_pred CCcccccccccccCCCCchhhhHhhcccccceecccccCCCCCcCCcchhhhhHHHHHHHhccccceeeeccchhhHHHH
Q 039096 422 GDTDGHNQAAPYKAADLSTWDRFVLNGIGNLILKELDYWPAKDPNASQRSLSRLAAALISNCITLRKVFVHCTAREHFMS 501 (554)
Q Consensus 422 ~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~l~L~~l~~~~~~~~~~~~~~~~lp~~~~l~~~~~L~~L~i~~~~~~~~~~ 501 (554)
|.+++.+ ..+..++ .|+.+......+.+.+.....+|.. +.++++|+.|+++++....++.
T Consensus 763 N~L~~lp-~~l~~L~----------------~L~~L~Ls~N~~ls~N~l~~~ip~~--l~~L~~L~~L~Ls~N~L~~Ip~ 823 (876)
T 4ecn_A 763 NCFSSFP-TQPLNSS----------------QLKAFGIRHQRDAEGNRILRQWPTG--ITTCPSLIQLQIGSNDIRKVDE 823 (876)
T ss_dssp SCCSSCC-CGGGGCT----------------TCCEEECCCCBCTTCCBCCCCCCTT--GGGCSSCCEEECCSSCCCBCCS
T ss_pred CCCCccc-hhhhcCC----------------CCCEEECCCCCCcccccccccChHH--HhcCCCCCEEECCCCCCCccCH
Confidence 8787632 1211112 2333332221111223333445666 7889999999999766544332
Q ss_pred hhhcCCCCCcccccccccccCC
Q 039096 502 MLISPTPNPKKARDAQIKLDYY 523 (554)
Q Consensus 502 ~~~~~~~~~~~L~~l~l~~~~~ 523 (554)
. -.++ |+.|+++++..
T Consensus 824 ~---l~~~---L~~LdLs~N~l 839 (876)
T 4ecn_A 824 K---LTPQ---LYILDIADNPN 839 (876)
T ss_dssp C---CCSS---SCEEECCSCTT
T ss_pred h---hcCC---CCEEECCCCCC
Confidence 2 1356 99999998864
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=1.2e-18 Score=182.18 Aligned_cols=309 Identities=18% Similarity=0.214 Sum_probs=152.7
Q ss_pred eEEEEecCCCchhchh--hcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCCcE
Q 039096 6 TSITLRGNACNLNIVP--LCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCLTS 83 (554)
Q Consensus 6 ~~L~l~~~~~~l~~l~--~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~~ 83 (554)
++|++.++. +..+| ..+++|++|+++++ .+... +.+. .+.+|++++++++.. ..+.. +..+++|++
T Consensus 49 ~~L~l~~~~--i~~l~~~~~l~~L~~L~Ls~n-~l~~~----~~~~-~l~~L~~L~l~~n~l---~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 49 TTLQADRLG--IKSIDGVEYLNNLTQINFSNN-QLTDI----TPLK-NLTKLVDILMNNNQI---ADITP-LANLTNLTG 116 (466)
T ss_dssp CEEECCSSC--CCCCTTGGGCTTCCEEECCSS-CCCCC----GGGT-TCTTCCEEECCSSCC---CCCGG-GTTCTTCCE
T ss_pred cEEecCCCC--CccCcchhhhcCCCEEECCCC-ccCCc----hhhh-ccccCCEEECCCCcc---ccChh-hcCCCCCCE
Confidence 456666553 22233 35777888888777 33221 1233 677777777774321 11222 667777888
Q ss_pred EEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEeccccc
Q 039096 84 VDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETST 163 (554)
Q Consensus 84 L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~ 163 (554)
|++++| .+.+. +. +.. +++|++|++++|.... + .. ...+++|++|++.++
T Consensus 117 L~L~~n-~l~~~-~~-~~~----l~~L~~L~l~~n~l~~-~-------------------~~-~~~l~~L~~L~l~~~-- 166 (466)
T 1o6v_A 117 LTLFNN-QITDI-DP-LKN----LTNLNRLELSSNTISD-I-------------------SA-LSGLTSLQQLSFGNQ-- 166 (466)
T ss_dssp EECCSS-CCCCC-GG-GTT----CTTCSEEEEEEEEECC-C-------------------GG-GTTCTTCSEEEEEES--
T ss_pred EECCCC-CCCCC-hH-HcC----CCCCCEEECCCCccCC-C-------------------hh-hccCCcccEeecCCc--
Confidence 877776 33332 22 333 3577777777765211 1 11 124555666655321
Q ss_pred ccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccC-------
Q 039096 164 LAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHS------- 236 (554)
Q Consensus 164 l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~------- 236 (554)
+.. +.. ...+++|++|++++|. +++.. .+ ..+++|+.|+++++.-
T Consensus 167 -------------------~~~--~~~-~~~l~~L~~L~l~~n~-l~~~~----~l-~~l~~L~~L~l~~n~l~~~~~~~ 218 (466)
T 1o6v_A 167 -------------------VTD--LKP-LANLTTLERLDISSNK-VSDIS----VL-AKLTNLESLIATNNQISDITPLG 218 (466)
T ss_dssp -------------------CCC--CGG-GTTCTTCCEEECCSSC-CCCCG----GG-GGCTTCSEEECCSSCCCCCGGGG
T ss_pred -------------------ccC--chh-hccCCCCCEEECcCCc-CCCCh----hh-ccCCCCCEEEecCCccccccccc
Confidence 000 000 2345555555555533 43321 22 4455555555554321
Q ss_pred ---cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhh
Q 039096 237 ---WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKP 313 (554)
Q Consensus 237 ---~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~ 313 (554)
+|+.|++++|. +++. ..+ ..+++|+.|++++|. +++.. . ...+ ++|++|++++|... .... ..
T Consensus 219 ~l~~L~~L~l~~n~-l~~~--~~l-~~l~~L~~L~l~~n~-l~~~~--~-~~~l-~~L~~L~l~~n~l~-~~~~----~~ 284 (466)
T 1o6v_A 219 ILTNLDELSLNGNQ-LKDI--GTL-ASLTNLTDLDLANNQ-ISNLA--P-LSGL-TKLTELKLGANQIS-NISP----LA 284 (466)
T ss_dssp GCTTCCEEECCSSC-CCCC--GGG-GGCTTCSEEECCSSC-CCCCG--G-GTTC-TTCSEEECCSSCCC-CCGG----GT
T ss_pred ccCCCCEEECCCCC-cccc--hhh-hcCCCCCEEECCCCc-cccch--h-hhcC-CCCCEEECCCCccC-cccc----cc
Confidence 55566666654 3332 122 235666666666665 33211 1 1223 56666666665433 1111 22
Q ss_pred cCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCC
Q 039096 314 IRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTRE 393 (554)
Q Consensus 314 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~ 393 (554)
.+++|++|+++.+.+.... .+ ..+++|+.|++++|. +++... +..+++|+.|+++ +|
T Consensus 285 ~l~~L~~L~L~~n~l~~~~--~~-----------~~l~~L~~L~L~~n~---l~~~~~--~~~l~~L~~L~l~---~n-- 341 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDIS--PI-----------SNLKNLTYLTLYFNN---ISDISP--VSSLTKLQRLFFY---NN-- 341 (466)
T ss_dssp TCTTCSEEECCSSCCSCCG--GG-----------GGCTTCSEEECCSSC---CSCCGG--GGGCTTCCEEECC---SS--
T ss_pred CCCccCeEEcCCCcccCch--hh-----------cCCCCCCEEECcCCc---CCCchh--hccCccCCEeECC---CC--
Confidence 3566666666555433221 13 456666666666554 444332 4456666666665 44
Q ss_pred CCCCCccccchhhhhccCCCccceeeecCCccccc
Q 039096 394 KPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHN 428 (554)
Q Consensus 394 ~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~ 428 (554)
.++ + +..+..+++|+.|+++.+.+++..
T Consensus 342 --~l~---~--~~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 342 --KVS---D--VSSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp --CCC---C--CGGGTTCTTCCEEECCSSCCCBCG
T ss_pred --ccC---C--chhhccCCCCCEEeCCCCccCccc
Confidence 222 1 124555666666666655555443
No 24
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=6.7e-18 Score=168.50 Aligned_cols=271 Identities=17% Similarity=0.196 Sum_probs=193.6
Q ss_pred HHHHHhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccC
Q 039096 71 FVPLLKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNC 150 (554)
Q Consensus 71 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~ 150 (554)
+..+...-..++.++++++. +. +..+..+. .++++.|+++++..... .+. + ..+
T Consensus 39 W~~~~~~~~~~~~l~l~~~~-~~---~~~~~~~~--~~~l~~L~l~~n~l~~~------------~~~-------~-~~~ 92 (336)
T 2ast_B 39 WYRLASDESLWQTLDLTGKN-LH---PDVTGRLL--SQGVIAFRCPRSFMDQP------------LAE-------H-FSP 92 (336)
T ss_dssp HHHHHTCSTTSSEEECTTCB-CC---HHHHHHHH--HTTCSEEECTTCEECSC------------CCS-------C-CCC
T ss_pred HHHHhcCchhheeecccccc-CC---HHHHHhhh--hccceEEEcCCcccccc------------chh-------h-ccC
Confidence 33333333458888888763 22 33344430 04789999987752211 111 1 257
Q ss_pred CCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEee
Q 039096 151 PRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLK 230 (554)
Q Consensus 151 ~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~ 230 (554)
++|++|++++| .+++.++......+++|++|++++|. +++.. ...+ ..+++|+
T Consensus 93 ~~L~~L~L~~~--------------------~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~--~~~l-~~~~~L~--- 145 (336)
T 2ast_B 93 FRVQHMDLSNS--------------------VIEVSTLHGILSQCSKLQNLSLEGLR-LSDPI--VNTL-AKNSNLV--- 145 (336)
T ss_dssp BCCCEEECTTC--------------------EECHHHHHHHHTTBCCCSEEECTTCB-CCHHH--HHHH-TTCTTCS---
T ss_pred CCCCEEEccCC--------------------CcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHH--HHHH-hcCCCCC---
Confidence 89999999774 46777777788889999999999875 75544 4456 5577666
Q ss_pred cccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcC-CccEEEEeccC-CCChhHHH
Q 039096 231 LGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRE-TLVVIKIYCCE-NLGAVASC 308 (554)
Q Consensus 231 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~-~L~~L~l~~c~-~~~~~~~l 308 (554)
+|++++|..+++.++..+...+++|++|++++|..+++.++......+ + +|++|++++|. .+ +...+
T Consensus 146 ---------~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l-~~~L~~L~l~~~~~~~-~~~~l 214 (336)
T 2ast_B 146 ---------RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV-SETITQLNLSGYRKNL-QKSDL 214 (336)
T ss_dssp ---------EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS-CTTCCEEECCSCGGGS-CHHHH
T ss_pred ---------EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc-ccCCCEEEeCCCcccC-CHHHH
Confidence 566777755888888887777999999999999559988888888888 7 99999999986 45 34466
Q ss_pred HHHhhcCCCccEEEeeeee-ccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEee
Q 039096 309 KALKPIRDRIQKLHIDCVW-DGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKM 387 (554)
Q Consensus 309 ~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~ 387 (554)
......+++|++|+++.+. +++..+..+ ..+++|++|++++|.+ +++.....+..+++|+.|+++
T Consensus 215 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-----------~~l~~L~~L~l~~~~~--~~~~~~~~l~~~~~L~~L~l~- 280 (336)
T 2ast_B 215 STLVRRCPNLVHLDLSDSVMLKNDCFQEF-----------FQLNYLQHLSLSRCYD--IIPETLLELGEIPTLKTLQVF- 280 (336)
T ss_dssp HHHHHHCTTCSEEECTTCTTCCGGGGGGG-----------GGCTTCCEEECTTCTT--CCGGGGGGGGGCTTCCEEECT-
T ss_pred HHHHhhCCCCCEEeCCCCCcCCHHHHHHH-----------hCCCCCCEeeCCCCCC--CCHHHHHHHhcCCCCCEEecc-
Confidence 6666779999999997665 666666666 7889999999998874 555555567889999999998
Q ss_pred eCCCCCCCCCCccccchhhhhccCCCccceeeecCCcccccccc
Q 039096 388 EGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQAA 431 (554)
Q Consensus 388 ~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~~~ 431 (554)
+| ++ +.++..+.. .++.|+++|+.+++.....
T Consensus 281 --~~-----i~---~~~~~~l~~--~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 281 --GI-----VP---DGTLQLLKE--ALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp --TS-----SC---TTCHHHHHH--HSTTSEESCCCSCCTTCSS
T ss_pred --Cc-----cC---HHHHHHHHh--hCcceEEecccCccccCCc
Confidence 55 55 555555543 3555668888888765544
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=1.6e-17 Score=166.57 Aligned_cols=286 Identities=16% Similarity=0.133 Sum_probs=160.5
Q ss_pred cCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCCcEEEecCCCCCCCChhHHHhh
Q 039096 23 CFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCLTSVDLSSFYHWTEDLPPVLKA 102 (554)
Q Consensus 23 ~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 102 (554)
.+++|+.|+++++ .+. .+ +.+. .+++|++++++++. -..+.. +..+++|++|++++| .+.+ ++ .+..
T Consensus 42 ~l~~L~~L~l~~~-~i~--~~--~~~~-~~~~L~~L~l~~n~---i~~~~~-~~~l~~L~~L~L~~n-~i~~-~~-~~~~ 108 (347)
T 4fmz_A 42 ELESITKLVVAGE-KVA--SI--QGIE-YLTNLEYLNLNGNQ---ITDISP-LSNLVKLTNLYIGTN-KITD-IS-ALQN 108 (347)
T ss_dssp HHTTCSEEECCSS-CCC--CC--TTGG-GCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCSS-CCCC-CG-GGTT
T ss_pred hcccccEEEEeCC-ccc--cc--hhhh-hcCCccEEEccCCc---cccchh-hhcCCcCCEEEccCC-cccC-ch-HHcC
Confidence 6788899999887 221 12 3343 56677777776332 111111 566777777777766 2232 22 2333
Q ss_pred cCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccCC
Q 039096 103 YPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDAR 182 (554)
Q Consensus 103 l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~ 182 (554)
+++|++|++++|.. .+ +. . ...+++|+.|++++|..+...
T Consensus 109 ----l~~L~~L~l~~n~i----~~------------~~----~-~~~l~~L~~L~l~~n~~~~~~--------------- 148 (347)
T 4fmz_A 109 ----LTNLRELYLNEDNI----SD------------IS----P-LANLTKMYSLNLGANHNLSDL--------------- 148 (347)
T ss_dssp ----CTTCSEEECTTSCC----CC------------CG----G-GTTCTTCCEEECTTCTTCCCC---------------
T ss_pred ----CCcCCEEECcCCcc----cC------------ch----h-hccCCceeEEECCCCCCcccc---------------
Confidence 35777777776652 11 00 0 125677777777665221111
Q ss_pred CCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCC
Q 039096 183 ISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCS 262 (554)
Q Consensus 183 i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 262 (554)
.. ...+++|++|++++|. +++.. .+ ..+++|+.|+ +++|. +.+... ...++
T Consensus 149 ------~~-~~~l~~L~~L~l~~~~-~~~~~----~~-~~l~~L~~L~------------l~~n~-l~~~~~---~~~l~ 199 (347)
T 4fmz_A 149 ------SP-LSNMTGLNYLTVTESK-VKDVT----PI-ANLTDLYSLS------------LNYNQ-IEDISP---LASLT 199 (347)
T ss_dssp ------GG-GTTCTTCCEEECCSSC-CCCCG----GG-GGCTTCSEEE------------CTTSC-CCCCGG---GGGCT
T ss_pred ------cc-hhhCCCCcEEEecCCC-cCCch----hh-ccCCCCCEEE------------ccCCc-cccccc---ccCCC
Confidence 01 2456777777777654 54432 13 4566666544 44444 332211 23477
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCcc
Q 039096 263 KLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTS 342 (554)
Q Consensus 263 ~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 342 (554)
+|+.|++++|. +++... ...+ ++|++|++++|... .... ...+++|++|+++.+.+... ..+
T Consensus 200 ~L~~L~l~~n~-l~~~~~---~~~~-~~L~~L~l~~n~l~-~~~~----~~~l~~L~~L~l~~n~l~~~--~~~------ 261 (347)
T 4fmz_A 200 SLHYFTAYVNQ-ITDITP---VANM-TRLNSLKIGNNKIT-DLSP----LANLSQLTWLEIGTNQISDI--NAV------ 261 (347)
T ss_dssp TCCEEECCSSC-CCCCGG---GGGC-TTCCEEECCSSCCC-CCGG----GTTCTTCCEEECCSSCCCCC--GGG------
T ss_pred ccceeecccCC-CCCCch---hhcC-CcCCEEEccCCccC-CCcc----hhcCCCCCEEECCCCccCCC--hhH------
Confidence 78888887776 443221 2233 67788888777544 2222 33567788888866654332 233
Q ss_pred chhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecC
Q 039096 343 TIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFG 422 (554)
Q Consensus 343 ~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~ 422 (554)
..+++|++|++++|. ++.+ ..+..+++|+.|+++ +| .+. +.....+..+++|+.|+++.|
T Consensus 262 -----~~l~~L~~L~l~~n~---l~~~--~~~~~l~~L~~L~L~---~n----~l~---~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 262 -----KDLTKLKMLNVGSNQ---ISDI--SVLNNLSQLNSLFLN---NN----QLG---NEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp -----TTCTTCCEEECCSSC---CCCC--GGGGGCTTCSEEECC---SS----CCC---GGGHHHHHTCTTCSEEECCSS
T ss_pred -----hcCCCcCEEEccCCc---cCCC--hhhcCCCCCCEEECc---CC----cCC---CcChhHhhccccCCEEEccCC
Confidence 567788888887664 5554 235677788888887 55 333 444456667778888888755
Q ss_pred Cccccc
Q 039096 423 DTDGHN 428 (554)
Q Consensus 423 ~~~~~~ 428 (554)
.+++..
T Consensus 322 ~l~~~~ 327 (347)
T 4fmz_A 322 HITDIR 327 (347)
T ss_dssp SCCCCG
T ss_pred cccccc
Confidence 566543
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.77 E-value=8.6e-18 Score=175.60 Aligned_cols=144 Identities=22% Similarity=0.276 Sum_probs=83.8
Q ss_pred cCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCCcEEEecCCCCCCCChhHHHhh
Q 039096 23 CFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCLTSVDLSSFYHWTEDLPPVLKA 102 (554)
Q Consensus 23 ~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 102 (554)
.+++++.|+++++ .+. .+ +.+. .+++|++++++++. -..+.. +..+++|++|++++| .+.+..+ +..
T Consensus 44 ~l~~l~~L~l~~~-~i~--~l--~~~~-~l~~L~~L~Ls~n~---l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~ 110 (466)
T 1o6v_A 44 DLDQVTTLQADRL-GIK--SI--DGVE-YLNNLTQINFSNNQ---LTDITP-LKNLTKLVDILMNNN-QIADITP--LAN 110 (466)
T ss_dssp HHHTCCEEECCSS-CCC--CC--TTGG-GCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GTT
T ss_pred HhccccEEecCCC-CCc--cC--cchh-hhcCCCEEECCCCc---cCCchh-hhccccCCEEECCCC-ccccChh--hcC
Confidence 4678999999887 321 22 4444 67788888887442 112222 667888888888776 3333322 333
Q ss_pred cCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccCC
Q 039096 103 YPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDAR 182 (554)
Q Consensus 103 l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~ 182 (554)
+ ++|++|++++|.. ++ +. . ...+++|++|++++|.
T Consensus 111 l----~~L~~L~L~~n~l----~~------------~~----~-~~~l~~L~~L~l~~n~-------------------- 145 (466)
T 1o6v_A 111 L----TNLTGLTLFNNQI----TD------------ID----P-LKNLTNLNRLELSSNT-------------------- 145 (466)
T ss_dssp C----TTCCEEECCSSCC----CC------------CG----G-GTTCTTCSEEEEEEEE--------------------
T ss_pred C----CCCCEEECCCCCC----CC------------Ch----H-HcCCCCCCEEECCCCc--------------------
Confidence 3 5888888887752 11 10 0 2367788888887651
Q ss_pred CCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccc
Q 039096 183 ISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQL 234 (554)
Q Consensus 183 i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~ 234 (554)
+++ +.. ...+++|++|++.. .+.+.. .+ .++++|+.|+++++
T Consensus 146 l~~--~~~-~~~l~~L~~L~l~~--~~~~~~----~~-~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 146 ISD--ISA-LSGLTSLQQLSFGN--QVTDLK----PL-ANLTTLERLDISSN 187 (466)
T ss_dssp ECC--CGG-GTTCTTCSEEEEEE--SCCCCG----GG-TTCTTCCEEECCSS
T ss_pred cCC--Chh-hccCCcccEeecCC--cccCch----hh-ccCCCCCEEECcCC
Confidence 111 011 34678888888853 343322 23 56777776666554
No 27
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.76 E-value=4.3e-19 Score=192.47 Aligned_cols=299 Identities=13% Similarity=0.026 Sum_probs=187.4
Q ss_pred CCcccceeecccccccCcc----------------cHHHHHh--cCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccE
Q 039096 51 MDPRLLADLLQMSFLCFGA----------------EFVPLLK--HCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTC 112 (554)
Q Consensus 51 ~~~~L~~l~l~~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~ 112 (554)
.+++|++|+++++. ..+. .+...+. ++++|++|++++| .+.+.+|..+..+ ++|++
T Consensus 204 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l----~~L~~ 277 (636)
T 4eco_A 204 RLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-PNLTKLPTFLKAL----PEMQL 277 (636)
T ss_dssp GCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-TTCSSCCTTTTTC----SSCCE
T ss_pred cccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-cCCccChHHHhcC----CCCCE
Confidence 78899999999553 1220 0333355 8999999999998 4566777766666 69999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHH--
Q 039096 113 LNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQ-- 190 (554)
Q Consensus 113 L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~-- 190 (554)
|++++|.. ++...+..-+..+ . -...+++|++|++++| .++ .+..
T Consensus 278 L~Ls~n~~---l~~~~lp~~~~~L-------~-~~~~l~~L~~L~L~~n--------------------~l~--~ip~~~ 324 (636)
T 4eco_A 278 INVACNRG---ISGEQLKDDWQAL-------A-DAPVGEKIQIIYIGYN--------------------NLK--TFPVET 324 (636)
T ss_dssp EECTTCTT---SCHHHHHHHHHHH-------H-HSGGGGTCCEEECCSS--------------------CCS--SCCCHH
T ss_pred EECcCCCC---CccccchHHHHhh-------h-ccccCCCCCEEECCCC--------------------cCC--ccCchh
Confidence 99998851 3331232221111 0 1124689999999875 222 1222
Q ss_pred HHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccC-----------c-ccEEEecCCCCCCHHHHHHHH
Q 039096 191 LFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHS-----------W-LESLSIKNCGDLSDMSLVAIG 258 (554)
Q Consensus 191 l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~-----------~-L~~L~l~~~~~l~~~~l~~l~ 258 (554)
....+++|++|+++++. +++.. ..+ ..+++|+.|+++++.- + |++|++++|. ++. +....
T Consensus 325 ~l~~l~~L~~L~L~~N~-l~g~i---p~~-~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~--lp~~~ 396 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQ-LEGKL---PAF-GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKY--IPNIF 396 (636)
T ss_dssp HHTTCTTCCEEECCSCC-CEEEC---CCC-EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSS--CCSCC
T ss_pred hhccCCCCCEEeCcCCc-Cccch---hhh-CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-Ccc--cchhh
Confidence 34578999999998854 65332 234 6788999999987531 5 9999999997 552 22111
Q ss_pred hc--CCCCcEEEecCCCCCCHHHHHHHHH------HhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccc
Q 039096 259 RG--CSKLVKFEVEGCKNITVDGLRTLAS------LLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGI 330 (554)
Q Consensus 259 ~~--~~~L~~L~L~~c~~i~~~~~~~l~~------~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~ 330 (554)
.. +++|+.|++++|. ++......+.. .+ ++|++|++++|....... .+...+++|++|+++.+.+..
T Consensus 397 ~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~-~~L~~L~Ls~N~l~~lp~---~~~~~l~~L~~L~Ls~N~l~~ 471 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKG-INVSSINLSNNQISKFPK---ELFSTGSPLSSINLMGNMLTE 471 (636)
T ss_dssp CTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCC-CCEEEEECCSSCCCSCCT---HHHHTTCCCSEEECCSSCCSB
T ss_pred hhcccCccCEEECcCCc-CCCcchhhhcccccccccC-CCCCEEECcCCccCcCCH---HHHccCCCCCEEECCCCCCCC
Confidence 11 3479999999987 54322111110 12 589999999886442111 233457889999998776553
Q ss_pred cchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCc--CCCCCCEEEEeeeCCCCCCCCCCccccchhhhh
Q 039096 331 RSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLD--ECPILENIRIKMEGDTREKPLLRDDKAWGLSCL 408 (554)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~--~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l 408 (554)
.....+.. ......++++|++|++++|. ++.++.. +. .+++|+.|+++ +|.... ++ ..+
T Consensus 472 i~~~~~~~----~~~~~~~l~~L~~L~Ls~N~---l~~lp~~-~~~~~l~~L~~L~Ls---~N~l~~-ip-------~~~ 532 (636)
T 4eco_A 472 IPKNSLKD----ENENFKNTYLLTSIDLRFNK---LTKLSDD-FRATTLPYLVGIDLS---YNSFSK-FP-------TQP 532 (636)
T ss_dssp CCSSSSEE----TTEECTTGGGCCEEECCSSC---CCBCCGG-GSTTTCTTCCEEECC---SSCCSS-CC-------CGG
T ss_pred cCHHHhcc----ccccccccCCccEEECcCCc---CCccChh-hhhccCCCcCEEECC---CCCCCC-cC-------hhh
Confidence 22222200 00001233489999998776 6665544 44 89999999998 664332 22 356
Q ss_pred ccCCCccceeee
Q 039096 409 TRYPRLSKLVLD 420 (554)
Q Consensus 409 ~~~~~L~~L~l~ 420 (554)
..+++|+.|+++
T Consensus 533 ~~l~~L~~L~Ls 544 (636)
T 4eco_A 533 LNSSTLKGFGIR 544 (636)
T ss_dssp GGCSSCCEEECC
T ss_pred hcCCCCCEEECC
Confidence 678999999996
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=1.9e-19 Score=193.17 Aligned_cols=241 Identities=12% Similarity=0.019 Sum_probs=117.4
Q ss_pred hcCCCCcEeecccccC----------cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCC
Q 039096 221 SKCVNLKGLKLGQLHS----------WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRET 290 (554)
Q Consensus 221 ~~~~~L~~L~l~~~~~----------~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~ 290 (554)
..+++|+.|++.++.- +|++|++++|. +.... . ..+++|+.|++.+|........ ..+ ++
T Consensus 279 ~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~-~~~l~--~--~~l~~L~~L~l~~n~~~~~~~~----~~~-~~ 348 (570)
T 2z63_A 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK-FGQFP--T--LKLKSLKRLTFTSNKGGNAFSE----VDL-PS 348 (570)
T ss_dssp GGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCB-CSSCC--B--CBCSSCCEEEEESCBSCCBCCC----CBC-TT
T ss_pred cCcCcccEEEecCccchhhhhhhccCCccEEeeccCc-ccccC--c--ccccccCEEeCcCCcccccccc----ccC-CC
Confidence 4566677766654321 56667777665 33111 1 2366777777776653211110 223 66
Q ss_pred ccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccc
Q 039096 291 LVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLP 370 (554)
Q Consensus 291 L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~ 370 (554)
|++|++++|... ...........+++|++|+++.+.+...... + ..+++|++|++++|. ++...
T Consensus 349 L~~L~l~~n~l~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~-----------~~l~~L~~L~l~~n~---l~~~~ 412 (570)
T 2z63_A 349 LEFLDLSRNGLS-FKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-F-----------LGLEQLEHLDFQHSN---LKQMS 412 (570)
T ss_dssp CCEEECCSSCCB-EEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-E-----------ETCTTCCEEECTTSE---EESCT
T ss_pred CCEEeCcCCccC-ccccccccccccCccCEEECCCCcccccccc-c-----------cccCCCCEEEccCCc---ccccc
Confidence 777777666433 1110011223466677777755543322222 3 556777777776554 33332
Q ss_pred c-ccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCcccc-cccccccCCCCchhhhHhhcc
Q 039096 371 V-AGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGH-NQAAPYKAADLSTWDRFVLNG 448 (554)
Q Consensus 371 ~-~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~-~~~~~~~~~~L~~l~~~~l~~ 448 (554)
. ..+..+++|+.|+++ +|. +. ......+..+++|+.|+++.+.+++. ....+..++
T Consensus 413 ~~~~~~~l~~L~~L~l~---~n~----l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~------------ 470 (570)
T 2z63_A 413 EFSVFLSLRNLIYLDIS---HTH----TR---VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------------ 470 (570)
T ss_dssp TSCTTTTCTTCCEEECT---TSC----CE---ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT------------
T ss_pred chhhhhcCCCCCEEeCc---CCc----cc---ccchhhhhcCCcCcEEECcCCcCccccchhhhhccc------------
Confidence 2 334666777777776 552 22 11223445567777777775545421 111211222
Q ss_pred cccceecccccCCCCCcCCcchhhhhHHHHHHHhccccceeeeccchhhHHHHhhhcCCCCCcccccccccccCCC
Q 039096 449 IGNLILKELDYWPAKDPNASQRSLSRLAAALISNCITLRKVFVHCTAREHFMSMLISPTPNPKKARDAQIKLDYYP 524 (554)
Q Consensus 449 ~~~l~L~~l~~~~~~~~~~~~~~~~lp~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 524 (554)
.|+.++.......+ ..|.. +.++++|+.|+++++....+.......+++ |+.|++.++.+.
T Consensus 471 ----~L~~L~l~~n~l~~------~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~N~~~ 531 (570)
T 2z63_A 471 ----NLTFLDLSQCQLEQ------LSPTA--FNSLSSLQVLNMASNQLKSVPDGIFDRLTS---LQKIWLHTNPWD 531 (570)
T ss_dssp ----TCCEEECTTSCCCE------ECTTT--TTTCTTCCEEECCSSCCSCCCTTTTTTCTT---CCEEECCSSCBC
T ss_pred ----CCCEEECCCCcccc------CChhh--hhcccCCCEEeCCCCcCCCCCHHHhhcccC---CcEEEecCCccc
Confidence 22222222211111 11222 556777777777755443333333333666 777777776543
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=183.43 Aligned_cols=103 Identities=17% Similarity=0.012 Sum_probs=69.4
Q ss_pred ceeEEEEecCC-Cch-hchhhcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCC
Q 039096 4 TRTSITLRGNA-CNL-NIVPLCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCL 81 (554)
Q Consensus 4 ~r~~L~l~~~~-~~l-~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L 81 (554)
.-++|++++|. ..+ ......+++|++|+++++ .+..... ..+. .+++|++|+++++.- . .+... .+++|
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~~-~l~~L~~L~Ls~N~l-~--~lp~~--~l~~L 92 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDI--SVFK-FNQELEYLDLSHNKL-V--KISCH--PTVNL 92 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEG--GGGT-TCTTCCEEECCSSCC-C--EEECC--CCCCC
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCC-ccCCcCh--HHhh-cccCCCEEecCCCce-e--ecCcc--ccCCc
Confidence 34688998884 111 122347899999999998 4543322 3444 889999999995431 1 11111 68999
Q ss_pred cEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCC
Q 039096 82 TSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTS 119 (554)
Q Consensus 82 ~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 119 (554)
++|++++|......+|..+..+ ++|++|++++|.
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l----~~L~~L~L~~n~ 126 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNM----SQLKFLGLSTTH 126 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGC----TTCCEEEEEESS
T ss_pred cEEeccCCccccccchhhhccC----CcceEEEecCcc
Confidence 9999998843332566667666 599999999887
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.74 E-value=4.9e-17 Score=162.97 Aligned_cols=300 Identities=14% Similarity=0.100 Sum_probs=197.3
Q ss_pred eeEEEEecCC-CchhchhhcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCCcE
Q 039096 5 RTSITLRGNA-CNLNIVPLCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCLTS 83 (554)
Q Consensus 5 r~~L~l~~~~-~~l~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~~ 83 (554)
-++|+++++. ..+.. ...+++|++|+++++ .+.. . +.+. .+++|++++++++.. . .+ +.+..+++|++
T Consensus 46 L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n-~i~~--~--~~~~-~l~~L~~L~L~~n~i-~--~~-~~~~~l~~L~~ 114 (347)
T 4fmz_A 46 ITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN-QITD--I--SPLS-NLVKLTNLYIGTNKI-T--DI-SALQNLTNLRE 114 (347)
T ss_dssp CSEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCC--C--GGGT-TCTTCCEEECCSSCC-C--CC-GGGTTCTTCSE
T ss_pred ccEEEEeCCccccchh-hhhcCCccEEEccCC-cccc--c--hhhh-cCCcCCEEEccCCcc-c--Cc-hHHcCCCcCCE
Confidence 4678888874 22322 246899999999998 4432 1 2244 899999999995531 1 12 24778999999
Q ss_pred EEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEeccccc
Q 039096 84 VDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETST 163 (554)
Q Consensus 84 L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~ 163 (554)
|++++|. +.+. +. +.. +++|++|++++|..... +. . ...+++|++|++++|.
T Consensus 115 L~l~~n~-i~~~-~~-~~~----l~~L~~L~l~~n~~~~~---------------~~----~-~~~l~~L~~L~l~~~~- 166 (347)
T 4fmz_A 115 LYLNEDN-ISDI-SP-LAN----LTKMYSLNLGANHNLSD---------------LS----P-LSNMTGLNYLTVTESK- 166 (347)
T ss_dssp EECTTSC-CCCC-GG-GTT----CTTCCEEECTTCTTCCC---------------CG----G-GTTCTTCCEEECCSSC-
T ss_pred EECcCCc-ccCc-hh-hcc----CCceeEEECCCCCCccc---------------cc----c-hhhCCCCcEEEecCCC-
Confidence 9999884 3432 32 443 47999999998853211 11 1 2378999999998762
Q ss_pred ccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEe
Q 039096 164 LAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSI 243 (554)
Q Consensus 164 l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l 243 (554)
+..... ...+++|++|++++|. +++.. .+ ..+++|+.|++
T Consensus 167 -------------------~~~~~~---~~~l~~L~~L~l~~n~-l~~~~----~~-~~l~~L~~L~l------------ 206 (347)
T 4fmz_A 167 -------------------VKDVTP---IANLTDLYSLSLNYNQ-IEDIS----PL-ASLTSLHYFTA------------ 206 (347)
T ss_dssp -------------------CCCCGG---GGGCTTCSEEECTTSC-CCCCG----GG-GGCTTCCEEEC------------
T ss_pred -------------------cCCchh---hccCCCCCEEEccCCc-ccccc----cc-cCCCccceeec------------
Confidence 111111 3578999999998864 75543 23 56777775554
Q ss_pred cCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEe
Q 039096 244 KNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHI 323 (554)
Q Consensus 244 ~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l 323 (554)
++|. +++... ...+++|++|++++|. +++... ...+ ++|++|++++|... ... ....+++|++|++
T Consensus 207 ~~n~-l~~~~~---~~~~~~L~~L~l~~n~-l~~~~~---~~~l-~~L~~L~l~~n~l~-~~~----~~~~l~~L~~L~l 272 (347)
T 4fmz_A 207 YVNQ-ITDITP---VANMTRLNSLKIGNNK-ITDLSP---LANL-SQLTWLEIGTNQIS-DIN----AVKDLTKLKMLNV 272 (347)
T ss_dssp CSSC-CCCCGG---GGGCTTCCEEECCSSC-CCCCGG---GTTC-TTCCEEECCSSCCC-CCG----GGTTCTTCCEEEC
T ss_pred ccCC-CCCCch---hhcCCcCCEEEccCCc-cCCCcc---hhcC-CCCCEEECCCCccC-CCh----hHhcCCCcCEEEc
Confidence 4444 333221 2348889999999887 453322 2334 78999999888544 221 2345788999999
Q ss_pred eeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccc
Q 039096 324 DCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAW 403 (554)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~ 403 (554)
+.+.+... ..+ ..+++|+.|++++|. ++......+..+++|+.|+++ +| .++ +.
T Consensus 273 ~~n~l~~~--~~~-----------~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~L~---~n----~l~---~~ 326 (347)
T 4fmz_A 273 GSNQISDI--SVL-----------NNLSQLNSLFLNNNQ---LGNEDMEVIGGLTNLTTLFLS---QN----HIT---DI 326 (347)
T ss_dssp CSSCCCCC--GGG-----------GGCTTCSEEECCSSC---CCGGGHHHHHTCTTCSEEECC---SS----SCC---CC
T ss_pred cCCccCCC--hhh-----------cCCCCCCEEECcCCc---CCCcChhHhhccccCCEEEcc---CC----ccc---cc
Confidence 77755443 334 678999999998776 677776767889999999998 66 233 11
Q ss_pred hhhhhccCCCccceeeecCCcc
Q 039096 404 GLSCLTRYPRLSKLVLDFGDTD 425 (554)
Q Consensus 404 ~l~~l~~~~~L~~L~l~c~~~~ 425 (554)
..+..+++|+.|+++.|.++
T Consensus 327 --~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 327 --RPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp --GGGGGCTTCSEESSSCC---
T ss_pred --cChhhhhccceeehhhhccc
Confidence 12667889999999866553
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=1.3e-18 Score=192.56 Aligned_cols=298 Identities=15% Similarity=0.061 Sum_probs=184.0
Q ss_pred CCcccceeecccccccCcc----------------cHHHHHh--cCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccE
Q 039096 51 MDPRLLADLLQMSFLCFGA----------------EFVPLLK--HCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTC 112 (554)
Q Consensus 51 ~~~~L~~l~l~~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~ 112 (554)
.+++|+.|+++++.. .+. .+...++ ++++|++|+|++| .+...+|..+..+ ++|++
T Consensus 446 ~L~~L~~L~Ls~N~L-sg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N-~l~~~iP~~l~~L----~~L~~ 519 (876)
T 4ecn_A 446 RLTKLQIIYFANSPF-TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC-PNMTQLPDFLYDL----PELQS 519 (876)
T ss_dssp GCTTCCEEEEESCCC-CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC-TTCCSCCGGGGGC----SSCCE
T ss_pred cCCCCCEEECcCCcC-CCCcccccccccccccccccCChhhhhccCCCCCEEECcCC-CCCccChHHHhCC----CCCCE
Confidence 788999999995431 110 1333344 8999999999988 4567778777777 59999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHH--
Q 039096 113 LNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQ-- 190 (554)
Q Consensus 113 L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~-- 190 (554)
|++++|.. ++...++.-+.+++ .....+++|+.|++++| .++ .+..
T Consensus 520 L~Ls~N~~---lsg~~iP~~i~~L~-------~~~~~l~~L~~L~Ls~N--------------------~L~--~ip~~~ 567 (876)
T 4ecn_A 520 LNIACNRG---ISAAQLKADWTRLA-------DDEDTGPKIQIFYMGYN--------------------NLE--EFPASA 567 (876)
T ss_dssp EECTTCTT---SCHHHHHHHHHHHH-------HCTTTTTTCCEEECCSS--------------------CCC--BCCCHH
T ss_pred EECcCCCC---cccccchHHHHhhh-------hcccccCCccEEEeeCC--------------------cCC--ccCChh
Confidence 99998852 33312332222211 01235678999999875 222 1111
Q ss_pred HHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccC-----------c-ccEEEecCCCCCCHHHHHHHH
Q 039096 191 LFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHS-----------W-LESLSIKNCGDLSDMSLVAIG 258 (554)
Q Consensus 191 l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~-----------~-L~~L~l~~~~~l~~~~l~~l~ 258 (554)
....+++|+.|+++++. ++. +..+ ..+++|+.|+++++.- + |+.|++++|. ++. +....
T Consensus 568 ~l~~L~~L~~L~Ls~N~-l~~----lp~~-~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~--lp~~~ 638 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNK-VRH----LEAF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKY--IPNIF 638 (876)
T ss_dssp HHTTCTTCCEEECTTSC-CCB----CCCC-CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCS--CCSCC
T ss_pred hhhcCCCCCEEECCCCC-ccc----chhh-cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CCc--Cchhh
Confidence 34578899999998754 652 2244 6788889998877541 5 9999999987 552 22111
Q ss_pred hcC--CCCcEEEecCCCCCCHHHHHHHH---H--HhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeecccc
Q 039096 259 RGC--SKLVKFEVEGCKNITVDGLRTLA---S--LLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIR 331 (554)
Q Consensus 259 ~~~--~~L~~L~L~~c~~i~~~~~~~l~---~--~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 331 (554)
... ++|+.|++++|. +++.. ..+. . .. ++|+.|++++|...... ..+...+++|++|+++.+.+...
T Consensus 639 ~~~~~~~L~~L~Ls~N~-l~g~i-p~l~~~l~~~~~-~~L~~L~Ls~N~L~~lp---~~~~~~l~~L~~L~Ls~N~L~~i 712 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNK-IGSEG-RNISCSMDDYKG-INASTVTLSYNEIQKFP---TELFATGSPISTIILSNNLMTSI 712 (876)
T ss_dssp CTTCSSCEEEEECCSSC-TTTTS-SSCSSCTTTCCC-CCEEEEECCSSCCCSCC---HHHHHTTCCCSEEECCSCCCSCC
T ss_pred hccccCCCCEEECcCCc-CCCcc-ccchhhhccccC-CCcCEEEccCCcCCccC---HHHHccCCCCCEEECCCCcCCcc
Confidence 112 349999999987 44211 1010 0 11 47999999888644211 12334578899999977765522
Q ss_pred chhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCc--CCCCCCEEEEeeeCCCCCCCCCCccccchhhhhc
Q 039096 332 SSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLD--ECPILENIRIKMEGDTREKPLLRDDKAWGLSCLT 409 (554)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~--~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~ 409 (554)
....+. + ......++++|+.|+|++|. ++.++.. +. .+++|+.|+++ +|.... ++ ..+.
T Consensus 713 p~~~~~-~---~~~~l~nl~~L~~L~Ls~N~---L~~lp~~-l~~~~l~~L~~L~Ls---~N~L~~-lp-------~~l~ 773 (876)
T 4ecn_A 713 PENSLK-P---KDGNYKNTYLLTTIDLRFNK---LTSLSDD-FRATTLPYLSNMDVS---YNCFSS-FP-------TQPL 773 (876)
T ss_dssp CTTSSS-C---TTSCCTTGGGCCEEECCSSC---CCCCCGG-GSTTTCTTCCEEECC---SSCCSS-CC-------CGGG
T ss_pred ChHHhc-c---ccccccccCCccEEECCCCC---CccchHH-hhhccCCCcCEEEeC---CCCCCc-cc-------hhhh
Confidence 222210 0 00001244589999998775 6655543 44 88999999998 663322 11 2466
Q ss_pred cCCCccceeee
Q 039096 410 RYPRLSKLVLD 420 (554)
Q Consensus 410 ~~~~L~~L~l~ 420 (554)
.+++|+.|+++
T Consensus 774 ~L~~L~~L~Ls 784 (876)
T 4ecn_A 774 NSSQLKAFGIR 784 (876)
T ss_dssp GCTTCCEEECC
T ss_pred cCCCCCEEECC
Confidence 78999999997
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=1.1e-18 Score=195.48 Aligned_cols=219 Identities=14% Similarity=0.074 Sum_probs=104.4
Q ss_pred CCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccC------------cccEEEecCCCCCCHHHHHHHHhcCCC
Q 039096 196 PLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHS------------WLESLSIKNCGDLSDMSLVAIGRGCSK 263 (554)
Q Consensus 196 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~------------~L~~L~l~~~~~l~~~~l~~l~~~~~~ 263 (554)
++|++|+++++. +++..+ ..+ ..+++|+.|++.++.- +|++|++++|. ++......+ ..+++
T Consensus 266 ~~L~~L~Ls~n~-l~~~~~--~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~ 339 (844)
T 3j0a_A 266 SSVRHLDLSHGF-VFSLNS--RVF-ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSNF-YGLPK 339 (844)
T ss_dssp SCCCEEECTTCC-CCEECS--CCS-SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCCSCSC-SSCTT
T ss_pred CCccEEECCCCc-ccccCh--hhh-hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccCHHHh-cCCCC
Confidence 577777777643 543321 133 5677777777765431 67777777775 332211122 23667
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhh--ccCCc
Q 039096 264 LVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAK--ATGNT 341 (554)
Q Consensus 264 L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~ 341 (554)
|+.|++++|. ++...... ...+ ++|+.|++++|... .. ..+++|++|+++.+.+........ .....
T Consensus 340 L~~L~L~~N~-i~~~~~~~-~~~l-~~L~~L~Ls~N~l~-~i-------~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~l 408 (844)
T 3j0a_A 340 VAYIDLQKNH-IAIIQDQT-FKFL-EKLQTLDLRDNALT-TI-------HFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408 (844)
T ss_dssp CCEEECCSCC-CCCCCSSC-SCSC-CCCCEEEEETCCSC-CC-------SSCCSCSEEEEESCCCCCCCCCCTTCCEEEC
T ss_pred CCEEECCCCC-CCccChhh-hcCC-CCCCEEECCCCCCC-cc-------cCCCCcchhccCCCCcccccccccccceeec
Confidence 7777777765 33211100 1122 67777777776432 11 114556666664443221100000 00000
Q ss_pred --------cchhhhhcCCCCceEEeecccCCccCccccc-cCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCC
Q 039096 342 --------STIFSKTRWKSLKELSFWIEVGELLTPLPVA-GLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYP 412 (554)
Q Consensus 342 --------~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~-~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~ 412 (554)
........+++|+.|+++++. ++..... .+..+++|+.|+++ ++....... .......+..++
T Consensus 409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~~~~~L~~L~Ls---~N~l~~~~~--~~~~~~~~~~l~ 480 (844)
T 3j0a_A 409 SENRLENLDILYFLLRVPHLQILILNQNR---FSSCSGDQTPSENPSLEQLFLG---ENMLQLAWE--TELCWDVFEGLS 480 (844)
T ss_dssp CSCCCCSSTTHHHHTTCTTCCEEEEESCC---CCCCCSSSSSCSCTTCCBCEEE---SCCCSSSCC--SCCCSSCSSCBC
T ss_pred ccCccccCchhhhhhcCCccceeeCCCCc---ccccccccccccCCccccccCC---CCccccccc--cccchhhhcCcc
Confidence 000112467777777776654 4443332 23456777777776 442211000 001112344466
Q ss_pred CccceeeecCCcccccccccccCCCCc
Q 039096 413 RLSKLVLDFGDTDGHNQAAPYKAADLS 439 (554)
Q Consensus 413 ~L~~L~l~c~~~~~~~~~~~~~~~~L~ 439 (554)
+|+.|+++.|.+++........++.|.
T Consensus 481 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 507 (844)
T 3j0a_A 481 HLQVLYLNHNYLNSLPPGVFSHLTALR 507 (844)
T ss_dssp CEECCCCCHHHHTTCCTTSSSSCCSCS
T ss_pred cccEEECCCCcccccChhHccchhhhh
Confidence 777777775566655544433344433
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=2.7e-17 Score=171.22 Aligned_cols=340 Identities=14% Similarity=0.076 Sum_probs=197.7
Q ss_pred eeEEEEecCC-Cch-hchhhcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccH-HHHHhcCCCC
Q 039096 5 RTSITLRGNA-CNL-NIVPLCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEF-VPLLKHCKCL 81 (554)
Q Consensus 5 r~~L~l~~~~-~~l-~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l-~~~~~~~~~L 81 (554)
-++|+++++. ..+ ......+++|++|+++++ .+..... ...+. .+++|++|+++++. -..+ ...+..+++|
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~~~~~i~-~~~~~-~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ-TPGLVIR-NNTFR-GLSSLIILKLDYNQ---FLQLETGAFNGLANL 105 (455)
T ss_dssp CCEEECCSSCCCEECTTTTSSCTTCCEEECCCC-STTCEEC-TTTTT-TCTTCCEEECTTCT---TCEECTTTTTTCTTC
T ss_pred cCEEEecCCccCcCChhHhccCccccEEECcCC-cccceEC-ccccc-ccccCCEEeCCCCc---cCccChhhccCcccC
Confidence 4789998884 111 122346899999999998 3433332 12344 89999999999432 1112 3346789999
Q ss_pred cEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEeccc
Q 039096 82 TSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAET 161 (554)
Q Consensus 82 ~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c 161 (554)
++|++++| .+.+..+.. .....+++|++|++++|...... + ..+...+++|++|++++|
T Consensus 106 ~~L~L~~n-~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~------------~------~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 106 EVLTLTQC-NLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQ------------P------ASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp CEEECTTS-CCBTHHHHS--STTTTCTTCCEEECCSSBCCSCC------------C------CGGGGGCTTCCEEECTTC
T ss_pred CEEeCCCC-CCCccccCc--ccccCcccCCEEECCCCccCccC------------c------ccccCCCCcccEEeCCCC
Confidence 99999998 444433332 11224479999999998732110 1 111236899999999876
Q ss_pred ccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHH--HHhcCCCCcEeecccccCccc
Q 039096 162 STLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEA--LKSKCVNLKGLKLGQLHSWLE 239 (554)
Q Consensus 162 ~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~--l~~~~~~L~~L~l~~~~~~L~ 239 (554)
.. + .+....+..+ ..++|+.|+++++. +.+....... .......+. +|+
T Consensus 165 ~l-~----------------~~~~~~l~~l--~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~---------~L~ 215 (455)
T 3v47_A 165 KV-K----------------SICEEDLLNF--QGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNT---------SIT 215 (455)
T ss_dssp CB-S----------------CCCTTTSGGG--TTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTC---------EEE
T ss_pred cc-c----------------ccChhhhhcc--ccccccccccccCc-ccccchhhccccccccccccc---------eee
Confidence 21 0 0111111111 23688889998754 5443221000 001111111 455
Q ss_pred EEEecCCCCCCHHHHHHHHhc--CCCCcEEEecCCCCCCH---------HHHHHHHH-HhcCCccEEEEeccCCCChhHH
Q 039096 240 SLSIKNCGDLSDMSLVAIGRG--CSKLVKFEVEGCKNITV---------DGLRTLAS-LLRETLVVIKIYCCENLGAVAS 307 (554)
Q Consensus 240 ~L~l~~~~~l~~~~l~~l~~~--~~~L~~L~L~~c~~i~~---------~~~~~l~~-~~~~~L~~L~l~~c~~~~~~~~ 307 (554)
+|++++|. +++.....+... .++|+.|++++|..... .....+.. .. ++|++|++++|.... .
T Consensus 216 ~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~-~-- 290 (455)
T 3v47_A 216 TLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA-SGVKTCDLSKSKIFA-L-- 290 (455)
T ss_dssp EEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTT-SCCCEEECCSSCCCE-E--
T ss_pred eEecCCCc-ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccc-cCceEEEecCccccc-c--
Confidence 77777776 676665555442 37788888877642110 00000000 11 578888887775432 1
Q ss_pred HHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEee
Q 039096 308 CKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKM 387 (554)
Q Consensus 308 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~ 387 (554)
.......+++|++|+++.+.+.......+ ..+++|++|++++|. ++.+....+..+++|++|+++
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----------~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls- 355 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAF-----------WGLTHLLKLNLSQNF---LGSIDSRMFENLDKLEVLDLS- 355 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTT-----------TTCTTCCEEECCSSC---CCEECGGGGTTCTTCCEEECC-
T ss_pred chhhcccCCCCCEEECCCCcccccChhHh-----------cCcccCCEEECCCCc---cCCcChhHhcCcccCCEEECC-
Confidence 11223446778888887666555545455 677888888887665 666666667778888888887
Q ss_pred eCCCCCCCCCCccccchhhhhccCCCccceeeecCCcccccc
Q 039096 388 EGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQ 429 (554)
Q Consensus 388 ~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~ 429 (554)
+| .++ ......+..+++|+.|+++.|.+++...
T Consensus 356 --~N----~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 356 --YN----HIR---ALGDQSFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp --SS----CCC---EECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred --CC----ccc---ccChhhccccccccEEECCCCccccCCH
Confidence 55 333 3333456667888888888777766443
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.72 E-value=1.1e-17 Score=178.99 Aligned_cols=121 Identities=20% Similarity=0.149 Sum_probs=73.0
Q ss_pred eEEEEecCCCchhchhhc-CCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccH-HHHHhcCCCCcE
Q 039096 6 TSITLRGNACNLNIVPLC-FDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEF-VPLLKHCKCLTS 83 (554)
Q Consensus 6 ~~L~l~~~~~~l~~l~~~-~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l-~~~~~~~~~L~~ 83 (554)
++++++++ .+..+|.. +++|+.|+++++ .+..-.. ..+. .+++|++|+++++. -..+ ...+..+++|++
T Consensus 34 ~~l~ls~~--~L~~ip~~~~~~L~~L~Ls~N-~i~~~~~--~~~~-~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 34 SMVDYSNR--NLTHVPKDLPPRTKALSLSQN-SISELRM--PDIS-FLSELRVLRLSHNR---IRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp CEEECTTS--CCCSCCTTSCTTCCEEECCSS-CCCCCCG--GGTT-TCTTCCEEECCSCC---CCEECTTTTTTCTTCCE
T ss_pred cEEEcCCC--CCccCCCCCCCCcCEEECCCC-CccccCh--hhhc-cCCCccEEECCCCC---CCcCCHHHhCCCCCCCE
Confidence 56777666 34556663 478899999888 4433221 2344 78888888888432 1112 233567888888
Q ss_pred EEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEeccc
Q 039096 84 VDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAET 161 (554)
Q Consensus 84 L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c 161 (554)
|++++|. +. .+|.. .+++|++|++++|.... +. + ......+++|++|+++++
T Consensus 105 L~Ls~N~-l~-~lp~~------~l~~L~~L~Ls~N~l~~-l~---~--------------p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 105 LDVSHNR-LQ-NISCC------PMASLRHLDLSFNDFDV-LP---V--------------CKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp EECTTSC-CC-EECSC------CCTTCSEEECCSSCCSB-CC---C--------------CGGGGGCTTCCEEEEECS
T ss_pred EECCCCc-CC-ccCcc------ccccCCEEECCCCCccc-cC---c--------------hHhhcccCcccEEecCCC
Confidence 8888773 33 34432 34688888888876221 00 0 011236788899998764
No 35
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=3.7e-17 Score=163.13 Aligned_cols=198 Identities=17% Similarity=0.181 Sum_probs=119.7
Q ss_pred cCCCCcEEEecCCCCCCCC-hhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCE
Q 039096 77 HCKCLTSVDLSSFYHWTED-LPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTL 155 (554)
Q Consensus 77 ~~~~L~~L~L~~~~~~~~~-~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~ 155 (554)
.+++|++|++++|. +.+. ++..+..+ ++|++|++++|. +++.....+ . .+++|++
T Consensus 91 ~~~~L~~L~L~~~~-l~~~~~~~~~~~~----~~L~~L~L~~~~----l~~~~~~~l--------------~-~~~~L~~ 146 (336)
T 2ast_B 91 SPFRVQHMDLSNSV-IEVSTLHGILSQC----SKLQNLSLEGLR----LSDPIVNTL--------------A-KNSNLVR 146 (336)
T ss_dssp CCBCCCEEECTTCE-ECHHHHHHHHTTB----CCCSEEECTTCB----CCHHHHHHH--------------T-TCTTCSE
T ss_pred cCCCCCEEEccCCC-cCHHHHHHHHhhC----CCCCEEeCcCcc----cCHHHHHHH--------------h-cCCCCCE
Confidence 46777777777763 3332 44444434 577777777765 554433222 2 4677777
Q ss_pred EEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCC-CCcEeecccc
Q 039096 156 LHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCV-NLKGLKLGQL 234 (554)
Q Consensus 156 L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~-~L~~L~l~~~ 234 (554)
|++++| ..+++.++..+...+++|++|++++|..+++.+ +......++ +|++
T Consensus 147 L~L~~~-------------------~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~l~~~L~~------ 199 (336)
T 2ast_B 147 LNLSGC-------------------SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH--VQVAVAHVSETITQ------ 199 (336)
T ss_dssp EECTTC-------------------BSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH--HHHHHHHSCTTCCE------
T ss_pred EECCCC-------------------CCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH--HHHHHHhcccCCCE------
Confidence 887665 356666666666677788888887764575543 334446666 6664
Q ss_pred cCcccEEEecCCC-CCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhh
Q 039096 235 HSWLESLSIKNCG-DLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKP 313 (554)
Q Consensus 235 ~~~L~~L~l~~~~-~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~ 313 (554)
|++++|. .+++..+......+++|++|++++|..+++.++..+. .+ ++|++|++++|..+ ....+..+.
T Consensus 200 ------L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l-~~L~~L~l~~~~~~-~~~~~~~l~- 269 (336)
T 2ast_B 200 ------LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QL-NYLQHLSLSRCYDI-IPETLLELG- 269 (336)
T ss_dssp ------EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GC-TTCCEEECTTCTTC-CGGGGGGGG-
T ss_pred ------EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CC-CCCCEeeCCCCCCC-CHHHHHHHh-
Confidence 4445553 3666666666666778888888877766665555443 33 77888888777644 233332333
Q ss_pred cCCCccEEEeeeeeccccchhhh
Q 039096 314 IRDRIQKLHIDCVWDGIRSSEAK 336 (554)
Q Consensus 314 ~~~~L~~L~l~~~~~~~~~~~~~ 336 (554)
.+++|++|+++.+ +++.....+
T Consensus 270 ~~~~L~~L~l~~~-i~~~~~~~l 291 (336)
T 2ast_B 270 EIPTLKTLQVFGI-VPDGTLQLL 291 (336)
T ss_dssp GCTTCCEEECTTS-SCTTCHHHH
T ss_pred cCCCCCEEeccCc-cCHHHHHHH
Confidence 4777888888544 444444443
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.70 E-value=4.8e-18 Score=178.11 Aligned_cols=311 Identities=16% Similarity=0.077 Sum_probs=199.9
Q ss_pred chhchhhcC-CCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccH-HHHHhcCCCCcEEEecCCCCCC
Q 039096 16 NLNIVPLCF-DAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEF-VPLLKHCKCLTSVDLSSFYHWT 93 (554)
Q Consensus 16 ~l~~l~~~~-~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~ 93 (554)
.+..+|..+ ++++.|+|+++ .+..... ..+. .+++|+.|+++++. -..+ ...+..+++|++|+|++|. +.
T Consensus 22 ~l~~ip~~~~~~l~~L~L~~n-~l~~~~~--~~~~-~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~-l~ 93 (477)
T 2id5_A 22 RFVAVPEGIPTETRLLDLGKN-RIKTLNQ--DEFA-SFPHLEELELNENI---VSAVEPGAFNNLFNLRTLGLRSNR-LK 93 (477)
T ss_dssp CCSSCCSCCCTTCSEEECCSS-CCCEECT--TTTT-TCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSC-CC
T ss_pred CcCcCCCCCCCCCcEEECCCC-ccceECH--hHcc-CCCCCCEEECCCCc---cCEeChhhhhCCccCCEEECCCCc-CC
Confidence 466778754 68999999988 4443222 3444 78899999998432 1111 2346788999999998873 33
Q ss_pred CChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCC
Q 039096 94 EDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDD 173 (554)
Q Consensus 94 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 173 (554)
...+..+. .+++|++|++++|.... +. ......+++|++|+++++.
T Consensus 94 ~~~~~~~~----~l~~L~~L~Ls~n~i~~-~~------------------~~~~~~l~~L~~L~l~~n~----------- 139 (477)
T 2id5_A 94 LIPLGVFT----GLSNLTKLDISENKIVI-LL------------------DYMFQDLYNLKSLEVGDND----------- 139 (477)
T ss_dssp SCCTTSST----TCTTCCEEECTTSCCCE-EC------------------TTTTTTCTTCCEEEECCTT-----------
T ss_pred ccCccccc----CCCCCCEEECCCCcccc-CC------------------hhHccccccCCEEECCCCc-----------
Confidence 32222233 34699999999886211 00 1112367899999997751
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHH
Q 039096 174 DGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMS 253 (554)
Q Consensus 174 ~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~ 253 (554)
++..... .+..+++|++|++++| .+++.. ...+ .++++|+.|++.++ . +....
T Consensus 140 ---------l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~--~~~l-~~l~~L~~L~l~~n------------~-i~~~~ 192 (477)
T 2id5_A 140 ---------LVYISHR-AFSGLNSLEQLTLEKC-NLTSIP--TEAL-SHLHGLIVLRLRHL------------N-INAIR 192 (477)
T ss_dssp ---------CCEECTT-SSTTCTTCCEEEEESC-CCSSCC--HHHH-TTCTTCCEEEEESC------------C-CCEEC
T ss_pred ---------cceeChh-hccCCCCCCEEECCCC-cCcccC--hhHh-cccCCCcEEeCCCC------------c-CcEeC
Confidence 1111001 1246789999999886 476554 2345 67888776665544 2 22111
Q ss_pred HHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccch
Q 039096 254 LVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSS 333 (554)
Q Consensus 254 l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~ 333 (554)
...+ ..+++|+.|++++|..++... .... .. .+|++|++++|... .. +.. ....+++|++|+++.+.+.....
T Consensus 193 ~~~~-~~l~~L~~L~l~~~~~~~~~~-~~~~-~~-~~L~~L~l~~n~l~-~~-~~~-~~~~l~~L~~L~Ls~n~l~~~~~ 265 (477)
T 2id5_A 193 DYSF-KRLYRLKVLEISHWPYLDTMT-PNCL-YG-LNLTSLSITHCNLT-AV-PYL-AVRHLVYLRFLNLSYNPISTIEG 265 (477)
T ss_dssp TTCS-CSCTTCCEEEEECCTTCCEEC-TTTT-TT-CCCSEEEEESSCCC-SC-CHH-HHTTCTTCCEEECCSSCCCEECT
T ss_pred hhhc-ccCcccceeeCCCCccccccC-cccc-cC-ccccEEECcCCccc-cc-CHH-HhcCccccCeeECCCCcCCccCh
Confidence 1111 237899999999987543211 1111 11 58999999998643 22 222 23458999999998887665555
Q ss_pred hhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCC
Q 039096 334 EAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPR 413 (554)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~ 413 (554)
..+ ..+++|+.|+++++. ++.+....+..+++|+.|+++ ++ .++ ......+..+++
T Consensus 266 ~~~-----------~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~---~N----~l~---~~~~~~~~~l~~ 321 (477)
T 2id5_A 266 SML-----------HELLRLQEIQLVGGQ---LAVVEPYAFRGLNYLRVLNVS---GN----QLT---TLEESVFHSVGN 321 (477)
T ss_dssp TSC-----------TTCTTCCEEECCSSC---CSEECTTTBTTCTTCCEEECC---SS----CCS---CCCGGGBSCGGG
T ss_pred hhc-----------cccccCCEEECCCCc---cceECHHHhcCcccCCEEECC---CC----cCc---eeCHhHcCCCcc
Confidence 555 789999999998765 777777778999999999998 66 333 222245666899
Q ss_pred ccceeeecCCccc
Q 039096 414 LSKLVLDFGDTDG 426 (554)
Q Consensus 414 L~~L~l~c~~~~~ 426 (554)
|+.|+++.|.++.
T Consensus 322 L~~L~l~~N~l~c 334 (477)
T 2id5_A 322 LETLILDSNPLAC 334 (477)
T ss_dssp CCEEECCSSCEEC
T ss_pred cCEEEccCCCccC
Confidence 9999999776654
No 37
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=2.4e-16 Score=160.41 Aligned_cols=264 Identities=14% Similarity=0.104 Sum_probs=150.1
Q ss_pred HHHhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCC---HHHHHHHHHhCCChHhhHHHHhcc
Q 039096 73 PLLKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYR---PQEIIEIIAARPNLNKWAVSIATN 149 (554)
Q Consensus 73 ~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~---~~~l~~l~~~~~~L~~L~~~~~~~ 149 (554)
..+..+++|++|+|++| .+....+..+......+++|++|++++|.. ..++ ..++..+. ..+ ..
T Consensus 26 ~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~-~~l~~~~~~~~~~l~----------~~l-~~ 92 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFT-GRVKDEIPEALRLLL----------QAL-LK 92 (386)
T ss_dssp HHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCT-TSCGGGSHHHHHHHH----------HHH-TT
T ss_pred HHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCccccc-CccccchhHHHHHHH----------HHH-hh
Confidence 34677889999999887 445544444544444567899999988641 1122 22333331 222 36
Q ss_pred CCCCCEEEecccccccccCCCCCCCCCccccCCCCHH---HHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCC
Q 039096 150 CPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEE---GLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNL 226 (554)
Q Consensus 150 ~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~---~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L 226 (554)
+++|++|++++| .+++. .+......+++|++|+|++|. +++.+ ...++..+..+
T Consensus 93 ~~~L~~L~Ls~n--------------------~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~--~~~l~~~l~~l 149 (386)
T 2ca6_A 93 CPKLHTVRLSDN--------------------AFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQA--GAKIARALQEL 149 (386)
T ss_dssp CTTCCEEECCSC--------------------CCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHH--HHHHHHHHHHH
T ss_pred CCcccEEECCCC--------------------cCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHH--HHHHHHHHHHH
Confidence 788999999764 23332 344444678899999998864 65443 22332222111
Q ss_pred cEeecccccCcccEEEecCCCCCCHHHHHHH---HhcCCCCcEEEecCCCCCCHHHHHHHHH----HhcCCccEEEEecc
Q 039096 227 KGLKLGQLHSWLESLSIKNCGDLSDMSLVAI---GRGCSKLVKFEVEGCKNITVDGLRTLAS----LLRETLVVIKIYCC 299 (554)
Q Consensus 227 ~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l---~~~~~~L~~L~L~~c~~i~~~~~~~l~~----~~~~~L~~L~l~~c 299 (554)
....+.+...+|++|++++|. +++.++..+ ...+++|++|++++|. +++.|+..+.. .+ ++|++|++++|
T Consensus 150 ~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n 226 (386)
T 2ca6_A 150 AVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYC-QELKVLDLQDN 226 (386)
T ss_dssp HHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGC-TTCCEEECCSS
T ss_pred hhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcC-CCccEEECcCC
Confidence 000000000144466677776 665544432 3357888888888887 78877666554 34 67888888877
Q ss_pred CCCChh--HHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhh--hcCCCCceEEeecccCCccCcc----cc
Q 039096 300 ENLGAV--ASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSK--TRWKSLKELSFWIEVGELLTPL----PV 371 (554)
Q Consensus 300 ~~~~~~--~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~~~~t~l----~~ 371 (554)
. ++.. ..+......+++|++|+++.+.++..+...++ ... ..+++|++|++++|. +++. ..
T Consensus 227 ~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-------~~l~~~~~~~L~~L~L~~n~---i~~~g~~~l~ 295 (386)
T 2ca6_A 227 T-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV-------DAFSKLENIGLQTLRLQYNE---IELDAVRTLK 295 (386)
T ss_dssp C-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH-------HHHHTCSSCCCCEEECCSSC---CBHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH-------HHHhhccCCCeEEEECcCCc---CCHHHHHHHH
Confidence 5 3111 22333445567788888866665555433331 111 226777777776665 4441 12
Q ss_pred ccC-cCCCCCCEEEEe
Q 039096 372 AGL-DECPILENIRIK 386 (554)
Q Consensus 372 ~~l-~~~~~L~~L~l~ 386 (554)
..+ .++++|+.|+++
T Consensus 296 ~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELN 311 (386)
T ss_dssp HHHHHHCTTCCEEECT
T ss_pred HHHHhcCCCceEEEcc
Confidence 223 456777777776
No 38
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=1.6e-15 Score=154.28 Aligned_cols=114 Identities=13% Similarity=0.076 Sum_probs=51.8
Q ss_pred EEEecCCCCCCHHHHHHHHh----cCCCCcEEEecCCCCCCHHHHHHHHHHhc--CCccEEEEeccCCCChhH--HHHHH
Q 039096 240 SLSIKNCGDLSDMSLVAIGR----GCSKLVKFEVEGCKNITVDGLRTLASLLR--ETLVVIKIYCCENLGAVA--SCKAL 311 (554)
Q Consensus 240 ~L~l~~~~~l~~~~l~~l~~----~~~~L~~L~L~~c~~i~~~~~~~l~~~~~--~~L~~L~l~~c~~~~~~~--~l~~l 311 (554)
.|++++|. +++.++..+.. .+++|+.|++++|. +++.|...+...+. ++|++|++++|... ... .+...
T Consensus 191 ~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~-~~~~~~l~~~ 267 (386)
T 2ca6_A 191 TVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLS-ARGAAAVVDA 267 (386)
T ss_dssp EEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCC-HHHHHHHHHH
T ss_pred EEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCc-hhhHHHHHHH
Confidence 34444454 55554333322 35666666666665 55555444433221 45666666665422 211 11111
Q ss_pred hh--cCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeeccc
Q 039096 312 KP--IRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEV 362 (554)
Q Consensus 312 ~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 362 (554)
.. .+++|++|+++.+.++..+...+. .....++++|++|++++|+
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~------~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLK------TVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHH------HHHHHHCTTCCEEECTTSB
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHH------HHHHhcCCCceEEEccCCc
Confidence 11 155666666655544443222220 0111345666666665554
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.65 E-value=6.5e-17 Score=169.50 Aligned_cols=292 Identities=15% Similarity=0.038 Sum_probs=168.8
Q ss_pred eeEEEEecCC-Cch-hchhhcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHH-HHHhcCCCC
Q 039096 5 RTSITLRGNA-CNL-NIVPLCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFV-PLLKHCKCL 81 (554)
Q Consensus 5 r~~L~l~~~~-~~l-~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~-~~~~~~~~L 81 (554)
-+.|+++++. ..+ ......+++|++|+|+++ .+..... ..+. .+.+|+.|+++++. -..+. ..+..+++|
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~--~~~~-~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEP--GAFN-NLFNLRTLGLRSNR---LKLIPLGVFTGLSNL 106 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECT--TTTT-TCTTCCEEECCSSC---CCSCCTTSSTTCTTC
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeCh--hhhh-CCccCCEEECCCCc---CCccCcccccCCCCC
Confidence 3567777763 111 112346788888888877 4433222 3444 78888888887432 11111 124568888
Q ss_pred cEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEeccc
Q 039096 82 TSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAET 161 (554)
Q Consensus 82 ~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c 161 (554)
++|+|++| .+....+..+.. +++|++|++++|... .+. ......+++|++|++++|
T Consensus 107 ~~L~Ls~n-~i~~~~~~~~~~----l~~L~~L~l~~n~l~-~~~------------------~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 107 TKLDISEN-KIVILLDYMFQD----LYNLKSLEVGDNDLV-YIS------------------HRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CEEECTTS-CCCEECTTTTTT----CTTCCEEEECCTTCC-EEC------------------TTSSTTCTTCCEEEEESC
T ss_pred CEEECCCC-ccccCChhHccc----cccCCEEECCCCccc-eeC------------------hhhccCCCCCCEEECCCC
Confidence 88888877 333333333333 368888888877521 000 001125778888888765
Q ss_pred ccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEE
Q 039096 162 STLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESL 241 (554)
Q Consensus 162 ~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L 241 (554)
.. ..+.. .....+++|+.|+++++. ++.... ..+ ..+++|+. |
T Consensus 163 ~l-----------------~~~~~----~~l~~l~~L~~L~l~~n~-i~~~~~--~~~-~~l~~L~~------------L 205 (477)
T 2id5_A 163 NL-----------------TSIPT----EALSHLHGLIVLRLRHLN-INAIRD--YSF-KRLYRLKV------------L 205 (477)
T ss_dssp CC-----------------SSCCH----HHHTTCTTCCEEEEESCC-CCEECT--TCS-CSCTTCCE------------E
T ss_pred cC-----------------cccCh----hHhcccCCCcEEeCCCCc-CcEeCh--hhc-ccCcccce------------e
Confidence 10 11221 223577888888887753 544321 123 44555554 4
Q ss_pred EecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEE
Q 039096 242 SIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKL 321 (554)
Q Consensus 242 ~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L 321 (554)
++++|..+.... .... ...+|+.|++++|. ++...... ...+ ++|+.|+++++... .... .....+++|++|
T Consensus 206 ~l~~~~~~~~~~-~~~~-~~~~L~~L~l~~n~-l~~~~~~~-~~~l-~~L~~L~Ls~n~l~-~~~~--~~~~~l~~L~~L 277 (477)
T 2id5_A 206 EISHWPYLDTMT-PNCL-YGLNLTSLSITHCN-LTAVPYLA-VRHL-VYLRFLNLSYNPIS-TIEG--SMLHELLRLQEI 277 (477)
T ss_dssp EEECCTTCCEEC-TTTT-TTCCCSEEEEESSC-CCSCCHHH-HTTC-TTCCEEECCSSCCC-EECT--TSCTTCTTCCEE
T ss_pred eCCCCccccccC-cccc-cCccccEEECcCCc-ccccCHHH-hcCc-cccCeeECCCCcCC-ccCh--hhccccccCCEE
Confidence 444443221110 0111 13478888888886 55322222 2333 78888888887533 2111 122346788888
Q ss_pred EeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEe
Q 039096 322 HIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIK 386 (554)
Q Consensus 322 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~ 386 (554)
+++.+.+.......+ ..+++|+.|+++++. ++.+....+..+++|+.|++.
T Consensus 278 ~L~~n~l~~~~~~~~-----------~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 278 QLVGGQLAVVEPYAF-----------RGLNYLRVLNVSGNQ---LTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp ECCSSCCSEECTTTB-----------TTCTTCCEEECCSSC---CSCCCGGGBSCGGGCCEEECC
T ss_pred ECCCCccceECHHHh-----------cCcccCCEEECCCCc---CceeCHhHcCCCcccCEEEcc
Confidence 887776655555555 678888888887665 777777767788888888887
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.65 E-value=8.2e-16 Score=164.52 Aligned_cols=102 Identities=16% Similarity=-0.010 Sum_probs=69.4
Q ss_pred eeEEEEecCC-Cch-hchhhcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCCc
Q 039096 5 RTSITLRGNA-CNL-NIVPLCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCLT 82 (554)
Q Consensus 5 r~~L~l~~~~-~~l-~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~ 82 (554)
-++|+++++. ..+ ..-...+++|++|+++++ .+..-.. ..+. .+++|++|+++++.- . .+... .+++|+
T Consensus 54 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--~~~~-~l~~L~~L~Ls~N~l-~--~lp~~--~l~~L~ 124 (562)
T 3a79_B 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDF--HVFL-FNQDLEYLDVSHNRL-Q--NISCC--PMASLR 124 (562)
T ss_dssp CCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECT--TTTT-TCTTCCEEECTTSCC-C--EECSC--CCTTCS
T ss_pred cCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCH--HHhC-CCCCCCEEECCCCcC-C--ccCcc--ccccCC
Confidence 4688998884 111 122346899999999998 5543322 3444 889999999995531 1 11111 689999
Q ss_pred EEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCC
Q 039096 83 SVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTS 119 (554)
Q Consensus 83 ~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 119 (554)
+|++++|....-..|..+..+ ++|++|++++|.
T Consensus 125 ~L~Ls~N~l~~l~~p~~~~~l----~~L~~L~L~~n~ 157 (562)
T 3a79_B 125 HLDLSFNDFDVLPVCKEFGNL----TKLTFLGLSAAK 157 (562)
T ss_dssp EEECCSSCCSBCCCCGGGGGC----TTCCEEEEECSB
T ss_pred EEECCCCCccccCchHhhccc----CcccEEecCCCc
Confidence 999999843222445566666 699999999987
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.64 E-value=2.4e-16 Score=171.04 Aligned_cols=147 Identities=20% Similarity=0.090 Sum_probs=91.9
Q ss_pred CC-CchhchhhcCC-CCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHH-HHHhcCCCCcEEEecCC
Q 039096 13 NA-CNLNIVPLCFD-AVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFV-PLLKHCKCLTSVDLSSF 89 (554)
Q Consensus 13 ~~-~~l~~l~~~~~-~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~ 89 (554)
|. ..+..+|..+| ++++|||+++ .+..-.. .++. .+++|++|+++++. -..+. ..+..+++|++|+|++|
T Consensus 38 c~~~~l~~vP~~lp~~~~~LdLs~N-~i~~l~~--~~f~-~l~~L~~L~Ls~N~---i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 38 CMELNFYKIPDNLPFSTKNLDLSFN-PLRHLGS--YSFF-SFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp CTTSCCSSCCSSSCTTCCEEECTTS-CCCEECT--TTTT-TCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECTTC
T ss_pred CCCCCcCccCCCCCcCCCEEEeeCC-CCCCCCH--HHHh-CCCCCCEEECCCCc---CCCcChhHhcCCCCCCEEEccCC
Confidence 54 46788999886 8999999998 4432211 3444 89999999999432 11222 24678999999999988
Q ss_pred CCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCC
Q 039096 90 YHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRG 169 (554)
Q Consensus 90 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~ 169 (554)
.+....+..+.. +++|++|++++|... ++. ...+..+++|++|++++|.
T Consensus 111 -~l~~l~~~~f~~----L~~L~~L~Ls~N~l~-~l~------------------~~~~~~L~~L~~L~Ls~N~------- 159 (635)
T 4g8a_A 111 -PIQSLALGAFSG----LSSLQKLVAVETNLA-SLE------------------NFPIGHLKTLKELNVAHNL------- 159 (635)
T ss_dssp -CCCEECGGGGTT----CTTCCEEECTTSCCC-CST------------------TCCCTTCTTCCEEECCSSC-------
T ss_pred -cCCCCCHHHhcC----CCCCCEEECCCCcCC-CCC------------------hhhhhcCcccCeeccccCc-------
Confidence 344332333444 469999999988621 111 1112367888888887641
Q ss_pred CCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCC
Q 039096 170 DPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRD 211 (554)
Q Consensus 170 ~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~ 211 (554)
++...+......+++|++|+++++ .++.
T Consensus 160 -------------l~~~~~~~~~~~l~~L~~L~L~~N-~l~~ 187 (635)
T 4g8a_A 160 -------------IQSFKLPEYFSNLTNLEHLDLSSN-KIQS 187 (635)
T ss_dssp -------------CCCCCCCGGGGGCTTCCEEECCSS-CCCE
T ss_pred -------------cccCCCchhhccchhhhhhcccCc-cccc
Confidence 111111122346778888888774 3544
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.63 E-value=1.4e-16 Score=162.50 Aligned_cols=306 Identities=16% Similarity=0.072 Sum_probs=193.3
Q ss_pred cCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHH-HHHhcCCCCcEEEecCCCCCCCChhHHHh
Q 039096 23 CFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFV-PLLKHCKCLTSVDLSSFYHWTEDLPPVLK 101 (554)
Q Consensus 23 ~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~l~ 101 (554)
.+++++.|+++++ .+.. .. +.+...+++|++++++++. -..+. ..+..+++|++|++++| .+....|..+.
T Consensus 43 ~l~~l~~l~l~~~-~l~~-l~--~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 114 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRK-LP--AALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQ 114 (390)
T ss_dssp GGCCCSEEEEESC-EESE-EC--THHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred ccCCceEEEecCC-chhh-CC--hhHhcccccCcEEECCCCc---ccccChhhccCCCCcCEEECCCC-CCCcCCHHHhc
Confidence 4577888888776 2211 11 2222256778888887332 11111 23567889999999887 34544444444
Q ss_pred hcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccC
Q 039096 102 AYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDA 181 (554)
Q Consensus 102 ~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~ 181 (554)
.+ ++|++|++++|... . .+ ..+...+++|++|++++|.
T Consensus 115 ~l----~~L~~L~L~~n~l~-~------------l~------~~~~~~l~~L~~L~L~~n~------------------- 152 (390)
T 3o6n_A 115 NV----PLLTVLVLERNDLS-S------------LP------RGIFHNTPKLTTLSMSNNN------------------- 152 (390)
T ss_dssp TC----TTCCEEECCSSCCC-C------------CC------TTTTTTCTTCCEEECCSSC-------------------
T ss_pred CC----CCCCEEECCCCccC-c------------CC------HHHhcCCCCCcEEECCCCc-------------------
Confidence 44 58999999887621 1 11 1122367888999987751
Q ss_pred CCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeeccccc-------CcccEEEecCCCCCCHHHH
Q 039096 182 RISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLH-------SWLESLSIKNCGDLSDMSL 254 (554)
Q Consensus 182 ~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~-------~~L~~L~l~~~~~l~~~~l 254 (554)
++... ......+++|++|+++++ .+++.. + ..+++|+.|+++++. .+|+.|++++|. ++....
T Consensus 153 -l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~-----~-~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~-l~~~~~ 222 (390)
T 3o6n_A 153 -LERIE-DDTFQATTSLQNLQLSSN-RLTHVD-----L-SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRG 222 (390)
T ss_dssp -CCBCC-TTTTSSCTTCCEEECCSS-CCSBCC-----G-GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC-CCEEEC
T ss_pred -cCccC-hhhccCCCCCCEEECCCC-cCCccc-----c-ccccccceeecccccccccCCCCcceEEECCCCe-eeeccc
Confidence 11100 011246788999999874 465532 2 567888888887653 278899998887 443211
Q ss_pred HHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchh
Q 039096 255 VAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSE 334 (554)
Q Consensus 255 ~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 334 (554)
...++|+.|++++|. +++. . ....+ ++|++|++++|... ... ......+++|++|+++.+.+.... .
T Consensus 223 ----~~~~~L~~L~l~~n~-l~~~--~-~l~~l-~~L~~L~Ls~n~l~-~~~--~~~~~~l~~L~~L~L~~n~l~~~~-~ 289 (390)
T 3o6n_A 223 ----PVNVELTILKLQHNN-LTDT--A-WLLNY-PGLVEVDLSYNELE-KIM--YHPFVKMQRLERLYISNNRLVALN-L 289 (390)
T ss_dssp ----CCCSSCCEEECCSSC-CCCC--G-GGGGC-TTCSEEECCSSCCC-EEE--SGGGTTCSSCCEEECCSSCCCEEE-C
T ss_pred ----cccccccEEECCCCC-Cccc--H-HHcCC-CCccEEECCCCcCC-CcC--hhHccccccCCEEECCCCcCcccC-c
Confidence 225789999999988 5543 1 22344 89999999998643 221 122345788999999777654322 1
Q ss_pred hhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCc
Q 039096 335 AKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRL 414 (554)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L 414 (554)
.. ..+++|++|++++|. ++.++.. +..+++|+.|+++ +| .++ .. .+..+++|
T Consensus 290 ~~-----------~~l~~L~~L~L~~n~---l~~~~~~-~~~l~~L~~L~L~---~N----~i~---~~---~~~~~~~L 341 (390)
T 3o6n_A 290 YG-----------QPIPTLKVLDLSHNH---LLHVERN-QPQFDRLENLYLD---HN----SIV---TL---KLSTHHTL 341 (390)
T ss_dssp SS-----------SCCTTCCEEECCSSC---CCCCGGG-HHHHTTCSEEECC---SS----CCC---CC---CCCTTCCC
T ss_pred cc-----------CCCCCCCEEECCCCc---ceecCcc-ccccCcCCEEECC---CC----ccc---ee---CchhhccC
Confidence 22 578999999998776 6655443 6678999999998 66 333 21 25568899
Q ss_pred cceeeecCCcccccc
Q 039096 415 SKLVLDFGDTDGHNQ 429 (554)
Q Consensus 415 ~~L~l~c~~~~~~~~ 429 (554)
+.|+++.|.++....
T Consensus 342 ~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 342 KNLTLSHNDWDCNSL 356 (390)
T ss_dssp SEEECCSSCEEHHHH
T ss_pred CEEEcCCCCccchhH
Confidence 999999777766543
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.62 E-value=1.7e-16 Score=161.81 Aligned_cols=282 Identities=14% Similarity=0.078 Sum_probs=186.4
Q ss_pred CCcccceeecccccccCcccHH-HHHhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHH
Q 039096 51 MDPRLLADLLQMSFLCFGAEFV-PLLKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEI 129 (554)
Q Consensus 51 ~~~~L~~l~l~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l 129 (554)
.+.+++.+++.+.. -..+. ..+..+++|++|+++++. +.+..+..+..+ ++|++|++++|... ++.
T Consensus 43 ~l~~l~~l~l~~~~---l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l----~~L~~L~L~~n~l~-~~~---- 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYA----HTIQKLYMGFNAIR-YLP---- 109 (390)
T ss_dssp GGCCCSEEEEESCE---ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTC----TTCCEEECCSSCCC-CCC----
T ss_pred ccCCceEEEecCCc---hhhCChhHhcccccCcEEECCCCc-ccccChhhccCC----CCcCEEECCCCCCC-cCC----
Confidence 56788888888332 12222 346789999999999873 343333344444 69999999988632 111
Q ss_pred HHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCC
Q 039096 130 IEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNV 209 (554)
Q Consensus 130 ~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l 209 (554)
......+++|++|++++|. ++.. ...++..+++|++|+++++ .+
T Consensus 110 --------------~~~~~~l~~L~~L~L~~n~--------------------l~~l-~~~~~~~l~~L~~L~L~~n-~l 153 (390)
T 3o6n_A 110 --------------PHVFQNVPLLTVLVLERND--------------------LSSL-PRGIFHNTPKLTTLSMSNN-NL 153 (390)
T ss_dssp --------------TTTTTTCTTCCEEECCSSC--------------------CCCC-CTTTTTTCTTCCEEECCSS-CC
T ss_pred --------------HHHhcCCCCCCEEECCCCc--------------------cCcC-CHHHhcCCCCCcEEECCCC-cc
Confidence 1112367899999998751 1110 0112346899999999885 47
Q ss_pred CCchhhHHHHHhcCCCCcEeecccccC---------cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHH
Q 039096 210 RDSGSASEALKSKCVNLKGLKLGQLHS---------WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGL 280 (554)
Q Consensus 210 ~~~~~~l~~l~~~~~~L~~L~l~~~~~---------~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~ 280 (554)
++..+ ..+ ..+++|+.|+++++.- +|+.|++++|. ++.. ...++|+.|++++|. ++....
T Consensus 154 ~~~~~--~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~-l~~~------~~~~~L~~L~l~~n~-l~~~~~ 222 (390)
T 3o6n_A 154 ERIED--DTF-QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL-LSTL------AIPIAVEELDASHNS-INVVRG 222 (390)
T ss_dssp CBCCT--TTT-SSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSC-CSEE------ECCSSCSEEECCSSC-CCEEEC
T ss_pred CccCh--hhc-cCCCCCCEEECCCCcCCccccccccccceeeccccc-cccc------CCCCcceEEECCCCe-eeeccc
Confidence 65432 245 6789999999987641 78888888886 4432 225678999998887 442211
Q ss_pred HHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeec
Q 039096 281 RTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWI 360 (554)
Q Consensus 281 ~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 360 (554)
... ++|+.|++++|... .. .....+++|++|+++.+.+.......+ ..+++|++|++++
T Consensus 223 ----~~~-~~L~~L~l~~n~l~-~~----~~l~~l~~L~~L~Ls~n~l~~~~~~~~-----------~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 223 ----PVN-VELTILKLQHNNLT-DT----AWLLNYPGLVEVDLSYNELEKIMYHPF-----------VKMQRLERLYISN 281 (390)
T ss_dssp ----CCC-SSCCEEECCSSCCC-CC----GGGGGCTTCSEEECCSSCCCEEESGGG-----------TTCSSCCEEECCS
T ss_pred ----ccc-ccccEEECCCCCCc-cc----HHHcCCCCccEEECCCCcCCCcChhHc-----------cccccCCEEECCC
Confidence 112 68999999888654 22 123457889999998777666555555 6789999999987
Q ss_pred ccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCccccc
Q 039096 361 EVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHN 428 (554)
Q Consensus 361 c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~ 428 (554)
+. ++.++.. +..+++|+.|+++ +|+... +. ..+..+++|+.|+++.|.++...
T Consensus 282 n~---l~~~~~~-~~~l~~L~~L~L~---~n~l~~-~~-------~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 282 NR---LVALNLY-GQPIPTLKVLDLS---HNHLLH-VE-------RNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp SC---CCEEECS-SSCCTTCCEEECC---SSCCCC-CG-------GGHHHHTTCSEEECCSSCCCCCC
T ss_pred Cc---CcccCcc-cCCCCCCCEEECC---CCccee-cC-------ccccccCcCCEEECCCCccceeC
Confidence 65 6665433 4678999999998 663221 11 23455789999999977776654
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.61 E-value=6.6e-17 Score=175.46 Aligned_cols=101 Identities=13% Similarity=-0.016 Sum_probs=54.0
Q ss_pred eeEEEEecCCCchhchh----hcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHH-HHHhcCC
Q 039096 5 RTSITLRGNACNLNIVP----LCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFV-PLLKHCK 79 (554)
Q Consensus 5 r~~L~l~~~~~~l~~l~----~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~-~~~~~~~ 79 (554)
-++|+|+++. +..++ ..+++|++|+|+++ .+..-.. .++. .+.+|++|+++++. -..+. ..+..++
T Consensus 54 ~~~LdLs~N~--i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~--~~f~-~L~~L~~L~Ls~N~---l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 54 TKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRC-EIQTIED--GAYQ-SLSHLSTLILTGNP---IQSLALGAFSGLS 124 (635)
T ss_dssp CCEEECTTSC--CCEECTTTTTTCTTCCEEECTTC-CCCEECT--TTTT-TCTTCCEEECTTCC---CCEECGGGGTTCT
T ss_pred CCEEEeeCCC--CCCCCHHHHhCCCCCCEEECCCC-cCCCcCh--hHhc-CCCCCCEEEccCCc---CCCCCHHHhcCCC
Confidence 4678888773 33443 35788888888887 3322111 2333 77888888887432 11111 2345666
Q ss_pred CCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCC
Q 039096 80 CLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTS 119 (554)
Q Consensus 80 ~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 119 (554)
+|++|++++| .+....+..+.. +++|++|++++|.
T Consensus 125 ~L~~L~Ls~N-~l~~l~~~~~~~----L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 125 SLQKLVAVET-NLASLENFPIGH----LKTLKELNVAHNL 159 (635)
T ss_dssp TCCEEECTTS-CCCCSTTCCCTT----CTTCCEEECCSSC
T ss_pred CCCEEECCCC-cCCCCChhhhhc----CcccCeeccccCc
Confidence 6667766665 222221111222 2456666666554
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=3.9e-16 Score=168.11 Aligned_cols=305 Identities=15% Similarity=0.067 Sum_probs=173.5
Q ss_pred cCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHH-HHHhcCCCCcEEEecCCCCCCCChhHHHh
Q 039096 23 CFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFV-PLLKHCKCLTSVDLSSFYHWTEDLPPVLK 101 (554)
Q Consensus 23 ~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~l~ 101 (554)
.+++++.|+++++ .+.. .+ +.+...+++|+.|+++++. -..+. ..+..+++|++|+|++| .+....|..+.
T Consensus 49 ~l~~l~~l~l~~~-~l~~-lp--~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 120 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRK-LP--AALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQ 120 (597)
T ss_dssp GGCCCSEEEESSC-EESE-EC--THHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred cCCCceEEEeeCC-CCCC-cC--HHHHccCCCCcEEECCCCC---CCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHc
Confidence 3566777777765 2211 11 2222256677777776332 11111 13556778888888776 34444443344
Q ss_pred hcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccC
Q 039096 102 AYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDA 181 (554)
Q Consensus 102 ~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~ 181 (554)
.+ ++|++|++++|... .+. ..++..+++|++|++++|.
T Consensus 121 ~l----~~L~~L~L~~n~l~-~l~------------------~~~~~~l~~L~~L~Ls~N~------------------- 158 (597)
T 3oja_B 121 NV----PLLTVLVLERNDLS-SLP------------------RGIFHNTPKLTTLSMSNNN------------------- 158 (597)
T ss_dssp TC----TTCCEEECCSSCCC-CCC------------------TTTTTTCTTCCEEECCSSC-------------------
T ss_pred CC----CCCCEEEeeCCCCC-CCC------------------HHHhccCCCCCEEEeeCCc-------------------
Confidence 44 57888888877521 111 1112356778888887651
Q ss_pred CCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeeccccc-------CcccEEEecCCCCCCHHHH
Q 039096 182 RISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLH-------SWLESLSIKNCGDLSDMSL 254 (554)
Q Consensus 182 ~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~-------~~L~~L~l~~~~~l~~~~l 254 (554)
++... ......+++|++|+++++ .+++.. + ..+++|+.|+++++. .+|+.|++++|. ++....
T Consensus 159 -l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~-----~-~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~-l~~~~~ 228 (597)
T 3oja_B 159 -LERIE-DDTFQATTSLQNLQLSSN-RLTHVD-----L-SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRG 228 (597)
T ss_dssp -CCBCC-TTTTTTCTTCCEEECTTS-CCSBCC-----G-GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSC-CCEEEC
T ss_pred -CCCCC-hhhhhcCCcCcEEECcCC-CCCCcC-----h-hhhhhhhhhhcccCccccccCCchhheeeccCCc-cccccc
Confidence 11100 011235677888888764 364432 2 456777777776643 167788888776 432210
Q ss_pred HHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchh
Q 039096 255 VAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSE 334 (554)
Q Consensus 255 ~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 334 (554)
...++|+.|++++|. +++. .....+ ++|+.|++++|.... . .+.....+++|++|+++.+.+.... .
T Consensus 229 ----~~~~~L~~L~L~~n~-l~~~---~~l~~l-~~L~~L~Ls~N~l~~-~--~~~~~~~l~~L~~L~Ls~N~l~~l~-~ 295 (597)
T 3oja_B 229 ----PVNVELTILKLQHNN-LTDT---AWLLNY-PGLVEVDLSYNELEK-I--MYHPFVKMQRLERLYISNNRLVALN-L 295 (597)
T ss_dssp ----SCCSCCCEEECCSSC-CCCC---GGGGGC-TTCSEEECCSSCCCE-E--ESGGGTTCSSCCEEECTTSCCCEEE-C
T ss_pred ----ccCCCCCEEECCCCC-CCCC---hhhccC-CCCCEEECCCCccCC-C--CHHHhcCccCCCEEECCCCCCCCCC-c
Confidence 114678888888887 4532 122234 788888888876432 1 1112234778888888766544321 1
Q ss_pred hhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCc
Q 039096 335 AKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRL 414 (554)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L 414 (554)
.. ..+++|+.|++++|. ++.++.. +..+++|+.|+++ +| .+. .. .+..+++|
T Consensus 296 ~~-----------~~l~~L~~L~Ls~N~---l~~i~~~-~~~l~~L~~L~L~---~N----~l~---~~---~~~~~~~L 347 (597)
T 3oja_B 296 YG-----------QPIPTLKVLDLSHNH---LLHVERN-QPQFDRLENLYLD---HN----SIV---TL---KLSTHHTL 347 (597)
T ss_dssp SS-----------SCCTTCCEEECCSSC---CCCCGGG-HHHHTTCSEEECC---SS----CCC---CC---CCCTTCCC
T ss_pred cc-----------ccCCCCcEEECCCCC---CCccCcc-cccCCCCCEEECC---CC----CCC---Cc---ChhhcCCC
Confidence 22 567888888887765 5555433 5677888888887 55 233 11 24457788
Q ss_pred cceeeecCCccccc
Q 039096 415 SKLVLDFGDTDGHN 428 (554)
Q Consensus 415 ~~L~l~c~~~~~~~ 428 (554)
+.|+++.|.++...
T Consensus 348 ~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 348 KNLTLSHNDWDCNS 361 (597)
T ss_dssp SEEECCSSCEEHHH
T ss_pred CEEEeeCCCCCChh
Confidence 88888866665543
No 46
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.57 E-value=1.5e-14 Score=145.75 Aligned_cols=148 Identities=8% Similarity=0.087 Sum_probs=63.5
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHHH---hcCCccEEEEeccCCCCh-hHHHHHHhhcC-CCccEEEeeeeeccccchhhh
Q 039096 262 SKLVKFEVEGCKNITVDGLRTLASL---LRETLVVIKIYCCENLGA-VASCKALKPIR-DRIQKLHIDCVWDGIRSSEAK 336 (554)
Q Consensus 262 ~~L~~L~L~~c~~i~~~~~~~l~~~---~~~~L~~L~l~~c~~~~~-~~~l~~l~~~~-~~L~~L~l~~~~~~~~~~~~~ 336 (554)
++|++|++++|. +++.++..+... .+++|++|++++|..... ...+......+ ++|++|+++.+.++..+...+
T Consensus 138 ~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l 216 (362)
T 3goz_A 138 ASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL 216 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH
Confidence 355555555554 444333333222 112555555555532110 11122222223 356666665554444333322
Q ss_pred ccCCccchhhhhc-CCCCceEEeecccCCccCcccccc----CcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhh---
Q 039096 337 ATGNTSTIFSKTR-WKSLKELSFWIEVGELLTPLPVAG----LDECPILENIRIKMEGDTREKPLLRDDKAWGLSCL--- 408 (554)
Q Consensus 337 ~~~~~~~~~~~~~-~~~L~~L~l~~c~~~~~t~l~~~~----l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l--- 408 (554)
+ ..... .++|++|++++|. +++..... +..+++|+.|+++ +|.. ..++ +.++..+
T Consensus 217 ~-------~~l~~~~~~L~~L~Ls~N~---l~~~~~~~l~~~~~~l~~L~~L~L~---~n~l-~~i~---~~~~~~l~~~ 279 (362)
T 3goz_A 217 A-------YIFSSIPNHVVSLNLCLNC---LHGPSLENLKLLKDSLKHLQTVYLD---YDIV-KNMS---KEQCKALGAA 279 (362)
T ss_dssp H-------HHHHHSCTTCCEEECCSSC---CCCCCHHHHHHTTTTTTTCSEEEEE---HHHH-TTCC---HHHHHHHHTT
T ss_pred H-------HHHhcCCCCceEEECcCCC---CCcHHHHHHHHHHhcCCCccEEEec---cCCc-cccC---HHHHHHHHHH
Confidence 1 11112 3466666665544 44433311 2455666666665 4410 0122 3333332
Q ss_pred -ccCCCccceeeecCCcccc
Q 039096 409 -TRYPRLSKLVLDFGDTDGH 427 (554)
Q Consensus 409 -~~~~~L~~L~l~c~~~~~~ 427 (554)
..+++|+.|+++.|.+.+.
T Consensus 280 ~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 280 FPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp STTCCEEEEECTTSCBCCGG
T ss_pred hccCCceEEEecCCCcCCCc
Confidence 2355566666665655544
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=9.4e-16 Score=165.11 Aligned_cols=282 Identities=14% Similarity=0.086 Sum_probs=192.4
Q ss_pred CCcccceeecccccccCcccH-HHHHhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHH
Q 039096 51 MDPRLLADLLQMSFLCFGAEF-VPLLKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEI 129 (554)
Q Consensus 51 ~~~~L~~l~l~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l 129 (554)
.+.+++.+.+.++. -..+ ..++..+++|++|+|++| .+.+..+..+..+ ++|++|+|++|... ++.
T Consensus 49 ~l~~l~~l~l~~~~---l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l----~~L~~L~L~~n~l~-~~~---- 115 (597)
T 3oja_B 49 TLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYA----HTIQKLYMGFNAIR-YLP---- 115 (597)
T ss_dssp GGCCCSEEEESSCE---ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTC----TTCCEEECCSSCCC-CCC----
T ss_pred cCCCceEEEeeCCC---CCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCC----CCCCEEECCCCcCC-CCC----
Confidence 46677888887332 1222 234678999999999988 3444333344444 69999999998632 111
Q ss_pred HHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCC
Q 039096 130 IEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNV 209 (554)
Q Consensus 130 ~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l 209 (554)
...+..+++|++|++++|. ++.. ...++..+++|++|++++| .+
T Consensus 116 --------------~~~~~~l~~L~~L~L~~n~--------------------l~~l-~~~~~~~l~~L~~L~Ls~N-~l 159 (597)
T 3oja_B 116 --------------PHVFQNVPLLTVLVLERND--------------------LSSL-PRGIFHNTPKLTTLSMSNN-NL 159 (597)
T ss_dssp --------------TTTTTTCTTCCEEECCSSC--------------------CCCC-CTTTTTTCTTCCEEECCSS-CC
T ss_pred --------------HHHHcCCCCCCEEEeeCCC--------------------CCCC-CHHHhccCCCCCEEEeeCC-cC
Confidence 1112368999999998762 1110 0112357899999999986 47
Q ss_pred CCchhhHHHHHhcCCCCcEeecccccC---------cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHH
Q 039096 210 RDSGSASEALKSKCVNLKGLKLGQLHS---------WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGL 280 (554)
Q Consensus 210 ~~~~~~l~~l~~~~~~L~~L~l~~~~~---------~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~ 280 (554)
++..+. .+ ..+++|+.|+++++.- +|+.|++++|. ++.. ...++|+.|++++|. ++...
T Consensus 160 ~~~~~~--~~-~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~-l~~l------~~~~~L~~L~ls~n~-l~~~~- 227 (597)
T 3oja_B 160 ERIEDD--TF-QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL-LSTL------AIPIAVEELDASHNS-INVVR- 227 (597)
T ss_dssp CBCCTT--TT-TTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSC-CSEE------ECCTTCSEEECCSSC-CCEEE-
T ss_pred CCCChh--hh-hcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCc-cccc------cCCchhheeeccCCc-ccccc-
Confidence 655432 45 7899999999987642 88899999886 4432 235789999999987 44211
Q ss_pred HHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeec
Q 039096 281 RTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWI 360 (554)
Q Consensus 281 ~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 360 (554)
...+++|+.|++++|.... . .....+++|++|+++.+.+....+..+ ..+++|+.|++++
T Consensus 228 ----~~~~~~L~~L~L~~n~l~~-~----~~l~~l~~L~~L~Ls~N~l~~~~~~~~-----------~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 228 ----GPVNVELTILKLQHNNLTD-T----AWLLNYPGLVEVDLSYNELEKIMYHPF-----------VKMQRLERLYISN 287 (597)
T ss_dssp ----CSCCSCCCEEECCSSCCCC-C----GGGGGCTTCSEEECCSSCCCEEESGGG-----------TTCSSCCEEECTT
T ss_pred ----cccCCCCCEEECCCCCCCC-C----hhhccCCCCCEEECCCCccCCCCHHHh-----------cCccCCCEEECCC
Confidence 1112689999999987542 2 223458899999998887666666666 7899999999987
Q ss_pred ccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCccccc
Q 039096 361 EVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHN 428 (554)
Q Consensus 361 c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~ 428 (554)
|. +++++.. +..+++|+.|+++ +|.... ++ ..+..+++|+.|+++.|.+++..
T Consensus 288 N~---l~~l~~~-~~~l~~L~~L~Ls---~N~l~~-i~-------~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 288 NR---LVALNLY-GQPIPTLKVLDLS---HNHLLH-VE-------RNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp SC---CCEEECS-SSCCTTCCEEECC---SSCCCC-CG-------GGHHHHTTCSEEECCSSCCCCCC
T ss_pred CC---CCCCCcc-cccCCCCcEEECC---CCCCCc-cC-------cccccCCCCCEEECCCCCCCCcC
Confidence 65 6665433 5778999999998 663321 11 23556899999999977787664
No 48
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.55 E-value=5.8e-15 Score=153.23 Aligned_cols=93 Identities=14% Similarity=-0.009 Sum_probs=49.1
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCC
Q 039096 261 CSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGN 340 (554)
Q Consensus 261 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 340 (554)
+++|+.|++++|. +++.. ...+ ++|+.|++++|.... . . ...+++|++|+++.+.+.... +
T Consensus 169 l~~L~~L~ls~n~-l~~l~----l~~l-~~L~~L~l~~N~l~~-~-~----l~~l~~L~~L~Ls~N~l~~ip---~---- 229 (457)
T 3bz5_A 169 QTQLTTLDCSFNK-ITELD----VSQN-KLLNRLNCDTNNITK-L-D----LNQNIQLTFLDCSSNKLTEID---V---- 229 (457)
T ss_dssp CTTCCEEECCSSC-CCCCC----CTTC-TTCCEEECCSSCCSC-C-C----CTTCTTCSEEECCSSCCSCCC---C----
T ss_pred CCcCCEEECCCCc-cceec----cccC-CCCCEEECcCCcCCe-e-c----cccCCCCCEEECcCCcccccC---c----
Confidence 5667777777665 44321 1222 567777776664331 1 1 223566777777665544321 3
Q ss_pred ccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEE
Q 039096 341 TSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRI 385 (554)
Q Consensus 341 ~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l 385 (554)
..+++|+.|+++++. +++++ +..+++|+.|++
T Consensus 230 -------~~l~~L~~L~l~~N~---l~~~~---~~~l~~L~~L~l 261 (457)
T 3bz5_A 230 -------TPLTQLTYFDCSVNP---LTELD---VSTLSKLTTLHC 261 (457)
T ss_dssp -------TTCTTCSEEECCSSC---CSCCC---CTTCTTCCEEEC
T ss_pred -------cccCCCCEEEeeCCc---CCCcC---HHHCCCCCEEec
Confidence 456677777776554 44443 233444544444
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.53 E-value=5.1e-15 Score=147.20 Aligned_cols=291 Identities=15% Similarity=0.120 Sum_probs=159.2
Q ss_pred CCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHH-HHHhcCCCCcEEEecCCCCCCCChhHHHhhcC
Q 039096 26 AVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFV-PLLKHCKCLTSVDLSSFYHWTEDLPPVLKAYP 104 (554)
Q Consensus 26 ~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~ 104 (554)
+++.++++++ .+. .+ |.. -.+.++.++++++. -..+. ..+..+++|++|++++| .+....|..+..+
T Consensus 32 ~l~~l~~~~~-~l~--~l--p~~--~~~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l- 99 (330)
T 1xku_A 32 HLRVVQCSDL-GLE--KV--PKD--LPPDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPL- 99 (330)
T ss_dssp ETTEEECTTS-CCC--SC--CCS--CCTTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTC-
T ss_pred CCeEEEecCC-Ccc--cc--Ccc--CCCCCeEEECCCCc---CCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCC-
Confidence 6777777765 221 11 111 12466777776332 11111 13567888999999887 3444445445544
Q ss_pred cCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccCCCC
Q 039096 105 DKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARIS 184 (554)
Q Consensus 105 ~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~ 184 (554)
++|++|++++|.. + ..+. ...++|++|++++| .++
T Consensus 100 ---~~L~~L~Ls~n~l----~---------~l~~---------~~~~~L~~L~l~~n--------------------~l~ 134 (330)
T 1xku_A 100 ---VKLERLYLSKNQL----K---------ELPE---------KMPKTLQELRVHEN--------------------EIT 134 (330)
T ss_dssp ---TTCCEEECCSSCC----S---------BCCS---------SCCTTCCEEECCSS--------------------CCC
T ss_pred ---CCCCEEECCCCcC----C---------ccCh---------hhcccccEEECCCC--------------------ccc
Confidence 5899999988762 1 0111 12368888888764 122
Q ss_pred HHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCC
Q 039096 185 EEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKL 264 (554)
Q Consensus 185 ~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L 264 (554)
... ......+++|++|+++++. ++..+.....+ ..+++|+.|+++++ . ++.... ...++|
T Consensus 135 ~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-~~l~~L~~L~l~~n------------~-l~~l~~----~~~~~L 194 (330)
T 1xku_A 135 KVR-KSVFNGLNQMIVVELGTNP-LKSSGIENGAF-QGMKKLSYIRIADT------------N-ITTIPQ----GLPPSL 194 (330)
T ss_dssp BBC-HHHHTTCTTCCEEECCSSC-CCGGGBCTTGG-GGCTTCCEEECCSS------------C-CCSCCS----SCCTTC
T ss_pred ccC-HhHhcCCccccEEECCCCc-CCccCcChhhc-cCCCCcCEEECCCC------------c-cccCCc----cccccC
Confidence 111 1234578899999998754 54322112234 56777776665544 2 221000 013677
Q ss_pred cEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccch
Q 039096 265 VKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTI 344 (554)
Q Consensus 265 ~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 344 (554)
++|++++|. +++.....+ ..+ ++|++|++++|... .... .....+++|++|+++.+.+. ..+..+
T Consensus 195 ~~L~l~~n~-l~~~~~~~~-~~l-~~L~~L~Ls~n~l~-~~~~--~~~~~l~~L~~L~L~~N~l~-~lp~~l-------- 259 (330)
T 1xku_A 195 TELHLDGNK-ITKVDAASL-KGL-NNLAKLGLSFNSIS-AVDN--GSLANTPHLRELHLNNNKLV-KVPGGL-------- 259 (330)
T ss_dssp SEEECTTSC-CCEECTGGG-TTC-TTCCEEECCSSCCC-EECT--TTGGGSTTCCEEECCSSCCS-SCCTTT--------
T ss_pred CEEECCCCc-CCccCHHHh-cCC-CCCCEEECCCCcCc-eeCh--hhccCCCCCCEEECCCCcCc-cCChhh--------
Confidence 888887776 443221112 223 67888888776533 2111 11234677888888777654 222334
Q ss_pred hhhhcCCCCceEEeecccCCccCccccccCc------CCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCcccee
Q 039096 345 FSKTRWKSLKELSFWIEVGELLTPLPVAGLD------ECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLV 418 (554)
Q Consensus 345 ~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~------~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~ 418 (554)
..+++|++|+++++. ++.++...+. ..+.|+.|++. +. .+. ........+..+++++.++
T Consensus 260 ---~~l~~L~~L~l~~N~---i~~~~~~~f~~~~~~~~~~~l~~l~l~---~N----~~~-~~~i~~~~f~~~~~l~~l~ 325 (330)
T 1xku_A 260 ---ADHKYIQVVYLHNNN---ISAIGSNDFCPPGYNTKKASYSGVSLF---SN----PVQ-YWEIQPSTFRCVYVRAAVQ 325 (330)
T ss_dssp ---TTCSSCCEEECCSSC---CCCCCTTSSSCSSCCTTSCCCSEEECC---SS----SSC-GGGSCGGGGTTCCCGGGEE
T ss_pred ---ccCCCcCEEECCCCc---CCccChhhcCCcccccccccccceEee---cC----ccc-ccccCccccccccceeEEE
Confidence 677888888887665 6666555442 24678888886 33 222 0011123455578888888
Q ss_pred eecC
Q 039096 419 LDFG 422 (554)
Q Consensus 419 l~c~ 422 (554)
++.|
T Consensus 326 L~~N 329 (330)
T 1xku_A 326 LGNY 329 (330)
T ss_dssp C---
T ss_pred eccc
Confidence 8743
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.53 E-value=5.9e-15 Score=148.17 Aligned_cols=238 Identities=16% Similarity=0.090 Sum_probs=124.9
Q ss_pred HhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCC
Q 039096 75 LKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLT 154 (554)
Q Consensus 75 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~ 154 (554)
+..+++|++|++++| .+.+..+..+..+ ++|++|++++|... .+. ......+++|+
T Consensus 72 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l----~~L~~L~Ls~n~l~-~~~------------------~~~~~~l~~L~ 127 (353)
T 2z80_A 72 LQRCVNLQALVLTSN-GINTIEEDSFSSL----GSLEHLDLSYNYLS-NLS------------------SSWFKPLSSLT 127 (353)
T ss_dssp TTTCTTCCEEECTTS-CCCEECTTTTTTC----TTCCEEECCSSCCS-SCC------------------HHHHTTCTTCS
T ss_pred hccCCCCCEEECCCC-ccCccCHhhcCCC----CCCCEEECCCCcCC-cCC------------------HhHhCCCccCC
Confidence 346778888888776 3343323333333 57888888877521 111 12223567788
Q ss_pred EEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccc
Q 039096 155 LLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQL 234 (554)
Q Consensus 155 ~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~ 234 (554)
+|++++|. ++..........+++|++|++++++.+++..+ ..+ ..+++|+
T Consensus 128 ~L~L~~n~--------------------l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~-~~l~~L~------- 177 (353)
T 2z80_A 128 FLNLLGNP--------------------YKTLGETSLFSHLTKLQILRVGNMDTFTKIQR--KDF-AGLTFLE------- 177 (353)
T ss_dssp EEECTTCC--------------------CSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--TTT-TTCCEEE-------
T ss_pred EEECCCCC--------------------CcccCchhhhccCCCCcEEECCCCccccccCH--HHc-cCCCCCC-------
Confidence 88886641 11000001123567888888877644543321 123 3445444
Q ss_pred cCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhc
Q 039096 235 HSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPI 314 (554)
Q Consensus 235 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~ 314 (554)
+|++++|. +++.....+. .+++|++|++++|. ++.... .....+ ++|++|++++|........-......
T Consensus 178 -----~L~l~~n~-l~~~~~~~l~-~l~~L~~L~l~~n~-l~~~~~-~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 178 -----ELEIDASD-LQSYEPKSLK-SIQNVSHLILHMKQ-HILLLE-IFVDVT-SSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp -----EEEEEETT-CCEECTTTTT-TCSEEEEEEEECSC-STTHHH-HHHHHT-TTEEEEEEESCBCTTCCCC------C
T ss_pred -----EEECCCCC-cCccCHHHHh-ccccCCeecCCCCc-cccchh-hhhhhc-ccccEEECCCCccccccccccccccc
Confidence 44455444 3322122222 36778888888777 443221 222334 77888888777533211110111223
Q ss_pred CCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEe
Q 039096 315 RDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIK 386 (554)
Q Consensus 315 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~ 386 (554)
++.++.+++..+.+.......+. .....+++|++|++++|. ++.++...+..+++|++|+++
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~-------~~l~~l~~L~~L~Ls~N~---l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVM-------KLLNQISGLLELEFSRNQ---LKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHH-------HHHHTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECC
T ss_pred cchhhccccccccccCcchhhhH-------HHHhcccCCCEEECCCCC---CCccCHHHHhcCCCCCEEEee
Confidence 56677777766554443332221 122567788888887665 666655545777888888886
No 51
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=7.8e-14 Score=140.45 Aligned_cols=255 Identities=15% Similarity=0.101 Sum_probs=146.0
Q ss_pred HHHhcCCCCcEEEecCCCCCCCChh----HHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhc
Q 039096 73 PLLKHCKCLTSVDLSSFYHWTEDLP----PVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIAT 148 (554)
Q Consensus 73 ~~~~~~~~L~~L~L~~~~~~~~~~~----~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~ 148 (554)
..+...++|++|+|++|. +.+..+ ..+..++ .+|++|++++|. +++.+...+. ..+..
T Consensus 16 ~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~---~~L~~L~Ls~N~----l~~~~~~~l~----------~~l~~ 77 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTP---ASVTSLNLSGNS----LGFKNSDELV----------QILAA 77 (362)
T ss_dssp HHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCC---TTCCEEECCSSC----GGGSCHHHHH----------HHHHT
T ss_pred HHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCC---CceeEEECcCCC----CCHHHHHHHH----------HHHhc
Confidence 334556668888888874 444444 3344342 278889988876 4433332221 22222
Q ss_pred cCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCC-CCCcEEEecCCCCCCCchhhHHHHHhc----C
Q 039096 149 NCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGL-PLLEELALDVGKNVRDSGSASEALKSK----C 223 (554)
Q Consensus 149 ~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~-~~L~~L~L~~c~~l~~~~~~l~~l~~~----~ 223 (554)
.+++|++|++++|.. .......+......+ ++|++|++++|. +++.+ ...++.. +
T Consensus 78 ~~~~L~~L~Ls~n~l-----------------~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~--~~~l~~~l~~~~ 137 (362)
T 3goz_A 78 IPANVTSLNLSGNFL-----------------SYKSSDELVKTLAAIPFTITVLDLGWND-FSSKS--SSEFKQAFSNLP 137 (362)
T ss_dssp SCTTCCEEECCSSCG-----------------GGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC--HHHHHHHHTTSC
T ss_pred cCCCccEEECcCCcC-----------------ChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHH--HHHHHHHHHhCC
Confidence 347888888877521 112334444444555 788889988754 76665 3344322 2
Q ss_pred CCCcEeecccccCcccEEEecCCCCCCHHHHHHHH---hcCC-CCcEEEecCCCCCCHHHHHHHHHH---hcCCccEEEE
Q 039096 224 VNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIG---RGCS-KLVKFEVEGCKNITVDGLRTLASL---LRETLVVIKI 296 (554)
Q Consensus 224 ~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~---~~~~-~L~~L~L~~c~~i~~~~~~~l~~~---~~~~L~~L~l 296 (554)
++|+ +|++++|. +++.+...++ ...+ +|++|++++|. +++.+...+... ++++|++|++
T Consensus 138 ~~L~------------~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L 203 (362)
T 3goz_A 138 ASIT------------SLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDL 203 (362)
T ss_dssp TTCC------------EEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred Ccee------------EEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEEC
Confidence 3444 56666665 5543333332 2244 88888888887 665555444432 3138888888
Q ss_pred eccCCCCh-hHHHHHHh-hcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCcccc---
Q 039096 297 YCCENLGA-VASCKALK-PIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPV--- 371 (554)
Q Consensus 297 ~~c~~~~~-~~~l~~l~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~--- 371 (554)
++|..... ...+.... ..+++|++|+++.+.++..+...++ .....+++|++|++++|.-..++....
T Consensus 204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~-------~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK-------LLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH-------HTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred CCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH-------HHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 88763211 11122222 2246888999888777776654442 223677889999998776211333222
Q ss_pred -ccCcCCCCCCEEEEe
Q 039096 372 -AGLDECPILENIRIK 386 (554)
Q Consensus 372 -~~l~~~~~L~~L~l~ 386 (554)
..+..+++|+.|+++
T Consensus 277 ~~~~~~l~~L~~LdL~ 292 (362)
T 3goz_A 277 GAAFPNIQKIILVDKN 292 (362)
T ss_dssp HTTSTTCCEEEEECTT
T ss_pred HHHhccCCceEEEecC
Confidence 234667777888876
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.51 E-value=4e-14 Score=146.75 Aligned_cols=91 Identities=20% Similarity=0.192 Sum_probs=55.0
Q ss_pred eEEEEecCCCchhchhhcCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCCcEEE
Q 039096 6 TSITLRGNACNLNIVPLCFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCLTSVD 85 (554)
Q Consensus 6 ~~L~l~~~~~~l~~l~~~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~ 85 (554)
++|+++++. +..+|...++|+.|+++++ .+.. + |. ...+|+.++++++. +..+-...++|++|+
T Consensus 74 ~~L~l~~~~--l~~lp~~~~~L~~L~l~~n-~l~~--l--p~---~~~~L~~L~l~~n~------l~~l~~~~~~L~~L~ 137 (454)
T 1jl5_A 74 HELELNNLG--LSSLPELPPHLESLVASCN-SLTE--L--PE---LPQSLKSLLVDNNN------LKALSDLPPLLEYLG 137 (454)
T ss_dssp SEEECTTSC--CSCCCSCCTTCSEEECCSS-CCSS--C--CC---CCTTCCEEECCSSC------CSCCCSCCTTCCEEE
T ss_pred CEEEecCCc--cccCCCCcCCCCEEEccCC-cCCc--c--cc---ccCCCcEEECCCCc------cCcccCCCCCCCEEE
Confidence 678888773 5556666788999999887 3332 2 22 34677888777332 111111125788888
Q ss_pred ecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCC
Q 039096 86 LSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTS 119 (554)
Q Consensus 86 L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 119 (554)
+++|. +.+ +| .+.. +++|++|++++|.
T Consensus 138 L~~n~-l~~-lp-~~~~----l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 138 VSNNQ-LEK-LP-ELQN----SSFLKIIDVDNNS 164 (454)
T ss_dssp CCSSC-CSS-CC-CCTT----CTTCCEEECCSSC
T ss_pred CcCCC-CCC-Cc-ccCC----CCCCCEEECCCCc
Confidence 87763 332 44 2333 3578888888775
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.51 E-value=2.8e-14 Score=147.97 Aligned_cols=270 Identities=19% Similarity=0.192 Sum_probs=159.6
Q ss_pred CCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCCcEEEecCCCCCCCChhHHHhhcCc
Q 039096 26 AVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCLTSVDLSSFYHWTEDLPPVLKAYPD 105 (554)
Q Consensus 26 ~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~ 105 (554)
++++|+++++ .+.. + |. ..++|+.++++++. +.++-...++|++|++++|. +.+ ++ .++
T Consensus 72 ~l~~L~l~~~-~l~~--l--p~---~~~~L~~L~l~~n~------l~~lp~~~~~L~~L~l~~n~-l~~-l~----~~~- 130 (454)
T 1jl5_A 72 QAHELELNNL-GLSS--L--PE---LPPHLESLVASCNS------LTELPELPQSLKSLLVDNNN-LKA-LS----DLP- 130 (454)
T ss_dssp TCSEEECTTS-CCSC--C--CS---CCTTCSEEECCSSC------CSSCCCCCTTCCEEECCSSC-CSC-CC----SCC-
T ss_pred CCCEEEecCC-cccc--C--CC---CcCCCCEEEccCCc------CCccccccCCCcEEECCCCc-cCc-cc----CCC-
Confidence 4688999988 3322 1 22 23688999998442 22211235899999999873 332 11 233
Q ss_pred CCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccCCCCH
Q 039096 106 KSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISE 185 (554)
Q Consensus 106 ~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~ 185 (554)
++|++|++++|... + .|. ...+++|++|++++|. ++.
T Consensus 131 --~~L~~L~L~~n~l~-~------------lp~--------~~~l~~L~~L~l~~N~--------------------l~~ 167 (454)
T 1jl5_A 131 --PLLEYLGVSNNQLE-K------------LPE--------LQNSSFLKIIDVDNNS--------------------LKK 167 (454)
T ss_dssp --TTCCEEECCSSCCS-S------------CCC--------CTTCTTCCEEECCSSC--------------------CSC
T ss_pred --CCCCEEECcCCCCC-C------------Ccc--------cCCCCCCCEEECCCCc--------------------Ccc
Confidence 68999999988632 1 121 1267889999998751 111
Q ss_pred HHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeeccccc--------CcccEEEecCCCCCCHHHHHHH
Q 039096 186 EGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLH--------SWLESLSIKNCGDLSDMSLVAI 257 (554)
Q Consensus 186 ~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~--------~~L~~L~l~~~~~l~~~~l~~l 257 (554)
+....++|++|+++++ .+++.. .+ .++++|+.|+++++. .+|++|++++|. ++. +..+
T Consensus 168 -----lp~~~~~L~~L~L~~n-~l~~l~----~~-~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~-l~~--lp~~ 233 (454)
T 1jl5_A 168 -----LPDLPPSLEFIAAGNN-QLEELP----EL-QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNI-LEE--LPEL 233 (454)
T ss_dssp -----CCCCCTTCCEEECCSS-CCSSCC----CC-TTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSC-CSS--CCCC
T ss_pred -----cCCCcccccEEECcCC-cCCcCc----cc-cCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCc-CCc--cccc
Confidence 0012348888888775 465422 34 678888888887754 278889998886 552 2233
Q ss_pred HhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhc
Q 039096 258 GRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKA 337 (554)
Q Consensus 258 ~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 337 (554)
..+++|+.|++++|. ++. +. ... ++|++|++++|... . +....++|++|+++.+.+... ..+
T Consensus 234 -~~l~~L~~L~l~~N~-l~~--l~---~~~-~~L~~L~l~~N~l~-~------l~~~~~~L~~L~ls~N~l~~l--~~~- 295 (454)
T 1jl5_A 234 -QNLPFLTTIYADNNL-LKT--LP---DLP-PSLEALNVRDNYLT-D------LPELPQSLTFLDVSENIFSGL--SEL- 295 (454)
T ss_dssp -TTCTTCCEEECCSSC-CSS--CC---SCC-TTCCEEECCSSCCS-C------CCCCCTTCCEEECCSSCCSEE--SCC-
T ss_pred -CCCCCCCEEECCCCc-CCc--cc---ccc-cccCEEECCCCccc-c------cCcccCcCCEEECcCCccCcc--cCc-
Confidence 348889999999887 442 11 122 68899999887643 2 112246788888876654321 111
Q ss_pred cCCccchhhhhcCCCCceEEeecccCCccCccccccCcCC-CCCCEEEEeeeCCCCCCCCCCccccchhhhhcc-CCCcc
Q 039096 338 TGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDEC-PILENIRIKMEGDTREKPLLRDDKAWGLSCLTR-YPRLS 415 (554)
Q Consensus 338 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~-~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~-~~~L~ 415 (554)
.++|++|+++++. ++++. .. ++|+.|+++ ++ .++ .+.. +++|+
T Consensus 296 ------------~~~L~~L~l~~N~---l~~i~-----~~~~~L~~L~Ls---~N----~l~--------~lp~~~~~L~ 340 (454)
T 1jl5_A 296 ------------PPNLYYLNASSNE---IRSLC-----DLPPSLEELNVS---NN----KLI--------ELPALPPRLE 340 (454)
T ss_dssp ------------CTTCCEEECCSSC---CSEEC-----CCCTTCCEEECC---SS----CCS--------CCCCCCTTCC
T ss_pred ------------CCcCCEEECcCCc---CCccc-----CCcCcCCEEECC---CC----ccc--------cccccCCcCC
Confidence 2567777776544 33322 12 366677765 44 222 0111 45666
Q ss_pred ceeeecCCccc
Q 039096 416 KLVLDFGDTDG 426 (554)
Q Consensus 416 ~L~l~c~~~~~ 426 (554)
.|+++.|.++.
T Consensus 341 ~L~L~~N~l~~ 351 (454)
T 1jl5_A 341 RLIASFNHLAE 351 (454)
T ss_dssp EEECCSSCCSC
T ss_pred EEECCCCcccc
Confidence 66666555553
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.49 E-value=4e-14 Score=146.94 Aligned_cols=298 Identities=16% Similarity=0.108 Sum_probs=166.7
Q ss_pred cCCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCCcEEEecCCCCCCCChhHHHhh
Q 039096 23 CFDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCLTSVDLSSFYHWTEDLPPVLKA 102 (554)
Q Consensus 23 ~~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 102 (554)
.+++|++|+++++ .+.. . |.+. .+++|++++++++. +.+ +. ++.+++|++|++++|. +.+. + +.
T Consensus 40 ~l~~L~~L~Ls~n-~l~~--~--~~l~-~l~~L~~L~Ls~n~-l~~--~~--~~~l~~L~~L~Ls~N~-l~~~-~--~~- 103 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITD--M--TGIE-KLTGLTKLICTSNN-ITT--LD--LSQNTNLTYLACDSNK-LTNL-D--VT- 103 (457)
T ss_dssp HHTTCCEEECCSS-CCCC--C--TTGG-GCTTCSEEECCSSC-CSC--CC--CTTCTTCSEEECCSSC-CSCC-C--CT-
T ss_pred HcCCCCEEEccCC-Cccc--C--hhhc-ccCCCCEEEccCCc-CCe--Ec--cccCCCCCEEECcCCC-Ccee-e--cC-
Confidence 5788888888887 4432 2 4444 77888888887442 111 11 5678888888888773 3332 2 33
Q ss_pred cCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccCC
Q 039096 103 YPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDAR 182 (554)
Q Consensus 103 l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~ 182 (554)
.+++|++|++++|... ++ + ...+++|++|++++| .
T Consensus 104 ---~l~~L~~L~L~~N~l~-~l------------~---------~~~l~~L~~L~l~~N--------------------~ 138 (457)
T 3bz5_A 104 ---PLTKLTYLNCDTNKLT-KL------------D---------VSQNPLLTYLNCARN--------------------T 138 (457)
T ss_dssp ---TCTTCCEEECCSSCCS-CC------------C---------CTTCTTCCEEECTTS--------------------C
T ss_pred ---CCCcCCEEECCCCcCC-ee------------c---------CCCCCcCCEEECCCC--------------------c
Confidence 3468888888877621 11 0 125677888888664 1
Q ss_pred CCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeeccccc---------CcccEEEecCCCCCCHHH
Q 039096 183 ISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLH---------SWLESLSIKNCGDLSDMS 253 (554)
Q Consensus 183 i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~---------~~L~~L~l~~~~~l~~~~ 253 (554)
++.. . ...+++|++|++++|..++.. .+ ..+++|+.|+++++. .+|+.|++++|. +++.
T Consensus 139 l~~l---~-l~~l~~L~~L~l~~n~~~~~~-----~~-~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~-l~~~- 206 (457)
T 3bz5_A 139 LTEI---D-VSHNTQLTELDCHLNKKITKL-----DV-TPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNN-ITKL- 206 (457)
T ss_dssp CSCC---C-CTTCTTCCEEECTTCSCCCCC-----CC-TTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSC-CSCC-
T ss_pred ccee---c-cccCCcCCEEECCCCCccccc-----cc-ccCCcCCEEECCCCccceeccccCCCCCEEECcCCc-CCee-
Confidence 1111 0 235677888888776545432 12 456777777766543 156677777665 4443
Q ss_pred HHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccch
Q 039096 254 LVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSS 333 (554)
Q Consensus 254 l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~ 333 (554)
.+ ..+++|+.|++++|. +++. . ...+ ++|+.|+++++...+ . + ...+++|+.|+++.+.+..-..
T Consensus 207 --~l-~~l~~L~~L~Ls~N~-l~~i--p--~~~l-~~L~~L~l~~N~l~~-~-~----~~~l~~L~~L~l~~n~L~~L~l 271 (457)
T 3bz5_A 207 --DL-NQNIQLTFLDCSSNK-LTEI--D--VTPL-TQLTYFDCSVNPLTE-L-D----VSTLSKLTTLHCIQTDLLEIDL 271 (457)
T ss_dssp --CC-TTCTTCSEEECCSSC-CSCC--C--CTTC-TTCSEEECCSSCCSC-C-C----CTTCTTCCEEECTTCCCSCCCC
T ss_pred --cc-ccCCCCCEEECcCCc-cccc--C--cccc-CCCCEEEeeCCcCCC-c-C----HHHCCCCCEEeccCCCCCEEEC
Confidence 12 236778888887776 4432 1 2233 677888877765332 1 1 2235666666654332111110
Q ss_pred hhhccCCccchhhhhcCCCCceEEeecccCCccCcc-------ccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhh
Q 039096 334 EAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPL-------PVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLS 406 (554)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l-------~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~ 406 (554)
..- ..........+++|+.|++++|.. ...+ ..-.+.++++|+.|+++ ++ .++ . +
T Consensus 272 ~~n---~~~~~~~~~~l~~L~~L~Ls~n~~--l~~l~~~~~~L~~L~l~~~~~L~~L~L~---~N----~l~---~--l- 333 (457)
T 3bz5_A 272 THN---TQLIYFQAEGCRKIKELDVTHNTQ--LYLLDCQAAGITELDLSQNPKLVYLYLN---NT----ELT---E--L- 333 (457)
T ss_dssp TTC---TTCCEEECTTCTTCCCCCCTTCTT--CCEEECTTCCCSCCCCTTCTTCCEEECT---TC----CCS---C--C-
T ss_pred CCC---ccCCcccccccccCCEEECCCCcc--cceeccCCCcceEechhhcccCCEEECC---CC----ccc---c--c-
Confidence 000 000001124567788888876652 2111 11124667778888776 44 333 2 1
Q ss_pred hhccCCCccceeeecCCccc
Q 039096 407 CLTRYPRLSKLVLDFGDTDG 426 (554)
Q Consensus 407 ~l~~~~~L~~L~l~c~~~~~ 426 (554)
.+..+++|+.|+++.|.+++
T Consensus 334 ~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 334 DVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCTTCTTCSEEECCSSCCCB
T ss_pred ccccCCcCcEEECCCCCCCC
Confidence 25667788888888777765
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.48 E-value=2.2e-14 Score=142.61 Aligned_cols=221 Identities=15% Similarity=0.188 Sum_probs=146.2
Q ss_pred CCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEe
Q 039096 150 CPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGL 229 (554)
Q Consensus 150 ~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L 229 (554)
.++|+.|+++++. ++.... .....+++|++|+++++ .+++..+. .+ ..+++|++|
T Consensus 51 ~~~l~~L~L~~n~--------------------i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~--~~-~~l~~L~~L 105 (330)
T 1xku_A 51 PPDTALLDLQNNK--------------------ITEIKD-GDFKNLKNLHTLILINN-KISKISPG--AF-APLVKLERL 105 (330)
T ss_dssp CTTCCEEECCSSC--------------------CCCBCT-TTTTTCTTCCEEECCSS-CCCCBCTT--TT-TTCTTCCEE
T ss_pred CCCCeEEECCCCc--------------------CCEeCh-hhhccCCCCCEEECCCC-cCCeeCHH--Hh-cCCCCCCEE
Confidence 4689999998751 111111 11357899999999885 47665322 45 688999999
Q ss_pred eccccc---------CcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHH-HHHHHhcCCccEEEEecc
Q 039096 230 KLGQLH---------SWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLR-TLASLLRETLVVIKIYCC 299 (554)
Q Consensus 230 ~l~~~~---------~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~-~l~~~~~~~L~~L~l~~c 299 (554)
+++++. .+|++|++++|. ++......+ ..+++|+.|++++|. ++..++. .....+ ++|++|+++++
T Consensus 106 ~Ls~n~l~~l~~~~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~~L~~L~l~~n 181 (330)
T 1xku_A 106 YLSKNQLKELPEKMPKTLQELRVHENE-ITKVRKSVF-NGLNQMIVVELGTNP-LKSSGIENGAFQGM-KKLSYIRIADT 181 (330)
T ss_dssp ECCSSCCSBCCSSCCTTCCEEECCSSC-CCBBCHHHH-TTCTTCCEEECCSSC-CCGGGBCTTGGGGC-TTCCEEECCSS
T ss_pred ECCCCcCCccChhhcccccEEECCCCc-ccccCHhHh-cCCccccEEECCCCc-CCccCcChhhccCC-CCcCEEECCCC
Confidence 998754 278889988886 554433334 348889999998887 4432211 112234 78888988887
Q ss_pred CCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCC
Q 039096 300 ENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPI 379 (554)
Q Consensus 300 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~ 379 (554)
....... ...++|++|+++.+.+.......+ ..+++|++|+++++. ++.+....+..+++
T Consensus 182 ~l~~l~~------~~~~~L~~L~l~~n~l~~~~~~~~-----------~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~ 241 (330)
T 1xku_A 182 NITTIPQ------GLPPSLTELHLDGNKITKVDAASL-----------KGLNNLAKLGLSFNS---ISAVDNGSLANTPH 241 (330)
T ss_dssp CCCSCCS------SCCTTCSEEECTTSCCCEECTGGG-----------TTCTTCCEEECCSSC---CCEECTTTGGGSTT
T ss_pred ccccCCc------cccccCCEEECCCCcCCccCHHHh-----------cCCCCCCEEECCCCc---CceeChhhccCCCC
Confidence 5432111 113678888887776555555555 678889999987665 66666666778888
Q ss_pred CCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCccccccc
Q 039096 380 LENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQA 430 (554)
Q Consensus 380 L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~~ 430 (554)
|++|+++ +|... .++ ..+..+++|+.|+++.|.+++.+..
T Consensus 242 L~~L~L~---~N~l~-~lp-------~~l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 242 LRELHLN---NNKLV-KVP-------GGLADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp CCEEECC---SSCCS-SCC-------TTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CCEEECC---CCcCc-cCC-------hhhccCCCcCEEECCCCcCCccChh
Confidence 9999987 66332 121 2356688888888887777765543
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.47 E-value=3.9e-15 Score=148.14 Aligned_cols=288 Identities=15% Similarity=0.102 Sum_probs=144.0
Q ss_pred CCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccH-HHHHhcCCCCcEEEecCCCCCCCChhHHHhhcC
Q 039096 26 AVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEF-VPLLKHCKCLTSVDLSSFYHWTEDLPPVLKAYP 104 (554)
Q Consensus 26 ~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~ 104 (554)
+++.++++++ .+. .. |.. -.++++.++++++. -..+ ...+..+++|++|++++| .+....|..+..+
T Consensus 34 ~l~~l~~~~~-~l~-~i---p~~--~~~~l~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l- 101 (332)
T 2ft3_A 34 HLRVVQCSDL-GLK-AV---PKE--ISPDTTLLDLQNND---ISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPL- 101 (332)
T ss_dssp ETTEEECCSS-CCS-SC---CSC--CCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTC-
T ss_pred cCCEEECCCC-Ccc-cc---CCC--CCCCCeEEECCCCc---CCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCc-
Confidence 5788888776 221 11 211 12467777777332 1111 123567888888888877 3444434444444
Q ss_pred cCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccCCCC
Q 039096 105 DKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARIS 184 (554)
Q Consensus 105 ~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~ 184 (554)
++|++|++++|... . .+. ...++|++|++++|. ++
T Consensus 102 ---~~L~~L~L~~n~l~-~------------l~~---------~~~~~L~~L~l~~n~--------------------i~ 136 (332)
T 2ft3_A 102 ---RKLQKLYISKNHLV-E------------IPP---------NLPSSLVELRIHDNR--------------------IR 136 (332)
T ss_dssp ---TTCCEEECCSSCCC-S------------CCS---------SCCTTCCEEECCSSC--------------------CC
T ss_pred ---CCCCEEECCCCcCC-c------------cCc---------cccccCCEEECCCCc--------------------cC
Confidence 58888888877521 1 110 022678888887641 11
Q ss_pred HHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCC
Q 039096 185 EEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKL 264 (554)
Q Consensus 185 ~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L 264 (554)
... ......+++|++|+++++. +++.+.....+ ..+ +|+.|++++ |. ++.... ...++|
T Consensus 137 ~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-~~l-~L~~L~l~~------------n~-l~~l~~----~~~~~L 195 (332)
T 2ft3_A 137 KVP-KGVFSGLRNMNCIEMGGNP-LENSGFEPGAF-DGL-KLNYLRISE------------AK-LTGIPK----DLPETL 195 (332)
T ss_dssp CCC-SGGGSSCSSCCEEECCSCC-CBGGGSCTTSS-CSC-CCSCCBCCS------------SB-CSSCCS----SSCSSC
T ss_pred ccC-HhHhCCCccCCEEECCCCc-cccCCCCcccc-cCC-ccCEEECcC------------CC-CCccCc----cccCCC
Confidence 100 1113467888888887743 54322111122 223 555555544 33 221000 012466
Q ss_pred cEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccch
Q 039096 265 VKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTI 344 (554)
Q Consensus 265 ~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 344 (554)
++|++++|. +++.....+ ..+ ++|++|++++|....... .....+++|++|+++.+.+. ..+..+
T Consensus 196 ~~L~l~~n~-i~~~~~~~l-~~l-~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~-~lp~~l-------- 260 (332)
T 2ft3_A 196 NELHLDHNK-IQAIELEDL-LRY-SKLYRLGLGHNQIRMIEN---GSLSFLPTLRELHLDNNKLS-RVPAGL-------- 260 (332)
T ss_dssp SCCBCCSSC-CCCCCTTSS-TTC-TTCSCCBCCSSCCCCCCT---TGGGGCTTCCEEECCSSCCC-BCCTTG--------
T ss_pred CEEECCCCc-CCccCHHHh-cCC-CCCCEEECCCCcCCcCCh---hHhhCCCCCCEEECCCCcCe-ecChhh--------
Confidence 666666665 332211111 122 566667766654321110 11234667777777666544 222223
Q ss_pred hhhhcCCCCceEEeecccCCccCccccccCcC------CCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCcccee
Q 039096 345 FSKTRWKSLKELSFWIEVGELLTPLPVAGLDE------CPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLV 418 (554)
Q Consensus 345 ~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~------~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~ 418 (554)
..+++|++|+++++. ++.++...+.. .+.|+.|++. ++. +. ........+..+++|+.++
T Consensus 261 ---~~l~~L~~L~l~~N~---l~~~~~~~~~~~~~~~~~~~l~~L~l~---~N~----~~-~~~~~~~~~~~l~~L~~l~ 326 (332)
T 2ft3_A 261 ---PDLKLLQVVYLHTNN---ITKVGVNDFCPVGFGVKRAYYNGISLF---NNP----VP-YWEVQPATFRCVTDRLAIQ 326 (332)
T ss_dssp ---GGCTTCCEEECCSSC---CCBCCTTSSSCSSCCSSSCCBSEEECC---SSS----SC-GGGSCGGGGTTBCCSTTEE
T ss_pred ---hcCccCCEEECCCCC---CCccChhHccccccccccccccceEee---cCc----cc-ccccCcccccccchhhhhh
Confidence 567777777776554 55555544422 3567777776 441 11 0011113455577777777
Q ss_pred ee
Q 039096 419 LD 420 (554)
Q Consensus 419 l~ 420 (554)
++
T Consensus 327 l~ 328 (332)
T 2ft3_A 327 FG 328 (332)
T ss_dssp C-
T ss_pred cc
Confidence 76
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.41 E-value=5.1e-14 Score=141.31 Aligned_cols=263 Identities=10% Similarity=0.057 Sum_probs=159.1
Q ss_pred CCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCC
Q 039096 196 PLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNI 275 (554)
Q Consensus 196 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i 275 (554)
++|++|+++++ .+++... ..+ .++++|+.|+++++ . +++.....+ ..+++|++|++++|. +
T Consensus 52 ~~L~~L~l~~n-~i~~~~~--~~~-~~l~~L~~L~L~~n------------~-l~~~~~~~~-~~l~~L~~L~Ls~n~-l 112 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISN--SDL-QRCVNLQALVLTSN------------G-INTIEEDSF-SSLGSLEHLDLSYNY-L 112 (353)
T ss_dssp TTCCEEECTTS-CCCEECT--TTT-TTCTTCCEEECTTS------------C-CCEECTTTT-TTCTTCCEEECCSSC-C
T ss_pred ccCcEEECCCC-cCcccCH--HHh-ccCCCCCEEECCCC------------c-cCccCHhhc-CCCCCCCEEECCCCc-C
Confidence 58999999885 4765432 234 66777776665543 3 332211122 237889999999887 5
Q ss_pred CHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeee-eccccchhhhccCCccchhhhhcCCCCc
Q 039096 276 TVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCV-WDGIRSSEAKATGNTSTIFSKTRWKSLK 354 (554)
Q Consensus 276 ~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 354 (554)
+.... .....+ ++|++|+++++... .... ......+++|++|+++.+ .++......+ ..+++|+
T Consensus 113 ~~~~~-~~~~~l-~~L~~L~L~~n~l~-~l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----------~~l~~L~ 177 (353)
T 2z80_A 113 SNLSS-SWFKPL-SSLTFLNLLGNPYK-TLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDF-----------AGLTFLE 177 (353)
T ss_dssp SSCCH-HHHTTC-TTCSEEECTTCCCS-SSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTT-----------TTCCEEE
T ss_pred CcCCH-hHhCCC-ccCCEEECCCCCCc-ccCc-hhhhccCCCCcEEECCCCccccccCHHHc-----------cCCCCCC
Confidence 43221 112334 78999999887533 1110 012345788999999766 3444444455 6789999
Q ss_pred eEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCccccccccccc
Q 039096 355 ELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQAAPYK 434 (554)
Q Consensus 355 ~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~~~~~~ 434 (554)
+|++++|. ++......+..+++|++|+++ ++ .+. ......+..+++|+.|+++.+.+++.....+..
T Consensus 178 ~L~l~~n~---l~~~~~~~l~~l~~L~~L~l~---~n----~l~---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 244 (353)
T 2z80_A 178 ELEIDASD---LQSYEPKSLKSIQNVSHLILH---MK----QHI---LLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244 (353)
T ss_dssp EEEEEETT---CCEECTTTTTTCSEEEEEEEE---CS----CST---THHHHHHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred EEECCCCC---cCccCHHHHhccccCCeecCC---CC----ccc---cchhhhhhhcccccEEECCCCcccccccccccc
Confidence 99998776 677767778889999999998 66 233 222223344899999999977777765433211
Q ss_pred CCCCchhhhHhhcccccceecccccCCCCCcCCcchhhhhHHHHHHHhccccceeeeccchhhHHHHhhhcCCCCCcccc
Q 039096 435 AADLSTWDRFVLNGIGNLILKELDYWPAKDPNASQRSLSRLAAALISNCITLRKVFVHCTAREHFMSMLISPTPNPKKAR 514 (554)
Q Consensus 435 ~~~L~~l~~~~l~~~~~l~L~~l~~~~~~~~~~~~~~~~lp~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~L~ 514 (554)
... ...+..+.+..+... + .....+|.. +.++++|+.|++++.....++......+++ |+
T Consensus 245 ~~~--------~~~l~~l~L~~~~l~-----~--~~l~~l~~~--l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~---L~ 304 (353)
T 2z80_A 245 GET--------NSLIKKFTFRNVKIT-----D--ESLFQVMKL--LNQISGLLELEFSRNQLKSVPDGIFDRLTS---LQ 304 (353)
T ss_dssp --C--------CCCCCEEEEESCBCC-----H--HHHHHHHHH--HHTCTTCCEEECCSSCCCCCCTTTTTTCTT---CC
T ss_pred ccc--------cchhhcccccccccc-----C--cchhhhHHH--HhcccCCCEEECCCCCCCccCHHHHhcCCC---CC
Confidence 000 001111122222111 0 111234665 888999999999976655555544344788 99
Q ss_pred cccccccCCCC
Q 039096 515 DAQIKLDYYPP 525 (554)
Q Consensus 515 ~l~l~~~~~~~ 525 (554)
.|++.++.+..
T Consensus 305 ~L~L~~N~~~~ 315 (353)
T 2z80_A 305 KIWLHTNPWDC 315 (353)
T ss_dssp EEECCSSCBCC
T ss_pred EEEeeCCCccC
Confidence 99999886543
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.39 E-value=2.1e-14 Score=142.86 Aligned_cols=222 Identities=20% Similarity=0.197 Sum_probs=139.2
Q ss_pred CCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEe
Q 039096 150 CPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGL 229 (554)
Q Consensus 150 ~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L 229 (554)
.++|+.|++++|. ++.... .....+++|++|+++++ .+++..+ ..+ .++++|++|
T Consensus 53 ~~~l~~L~l~~n~--------------------i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~--~~~-~~l~~L~~L 107 (332)
T 2ft3_A 53 SPDTTLLDLQNND--------------------ISELRK-DDFKGLQHLYALVLVNN-KISKIHE--KAF-SPLRKLQKL 107 (332)
T ss_dssp CTTCCEEECCSSC--------------------CCEECT-TTTTTCTTCCEEECCSS-CCCEECG--GGS-TTCTTCCEE
T ss_pred CCCCeEEECCCCc--------------------CCccCH-hHhhCCCCCcEEECCCC-ccCccCH--hHh-hCcCCCCEE
Confidence 4689999998752 211111 11357899999999885 4765532 255 788999999
Q ss_pred eccccc---------CcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccC
Q 039096 230 KLGQLH---------SWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCE 300 (554)
Q Consensus 230 ~l~~~~---------~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 300 (554)
+++++. .+|++|++++|. ++......+ ..+++|+.|++++|. +++.++....-.. .+|++|+++++.
T Consensus 108 ~L~~n~l~~l~~~~~~~L~~L~l~~n~-i~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~~~~~-l~L~~L~l~~n~ 183 (332)
T 2ft3_A 108 YISKNHLVEIPPNLPSSLVELRIHDNR-IRKVPKGVF-SGLRNMNCIEMGGNP-LENSGFEPGAFDG-LKLNYLRISEAK 183 (332)
T ss_dssp ECCSSCCCSCCSSCCTTCCEEECCSSC-CCCCCSGGG-SSCSSCCEEECCSCC-CBGGGSCTTSSCS-CCCSCCBCCSSB
T ss_pred ECCCCcCCccCccccccCCEEECCCCc-cCccCHhHh-CCCccCCEEECCCCc-cccCCCCcccccC-CccCEEECcCCC
Confidence 998754 278888888876 443222222 347888888888876 4432211100000 267778887775
Q ss_pred CCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCC
Q 039096 301 NLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPIL 380 (554)
Q Consensus 301 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L 380 (554)
...... ...++|++|+++.+.+.......+ ..+++|++|+++++. ++.+....+..+++|
T Consensus 184 l~~l~~------~~~~~L~~L~l~~n~i~~~~~~~l-----------~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L 243 (332)
T 2ft3_A 184 LTGIPK------DLPETLNELHLDHNKIQAIELEDL-----------LRYSKLYRLGLGHNQ---IRMIENGSLSFLPTL 243 (332)
T ss_dssp CSSCCS------SSCSSCSCCBCCSSCCCCCCTTSS-----------TTCTTCSCCBCCSSC---CCCCCTTGGGGCTTC
T ss_pred CCccCc------cccCCCCEEECCCCcCCccCHHHh-----------cCCCCCCEEECCCCc---CCcCChhHhhCCCCC
Confidence 332110 112678888887776555554555 677888888887665 666666667778888
Q ss_pred CEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCcccccccc
Q 039096 381 ENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQAA 431 (554)
Q Consensus 381 ~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~~~ 431 (554)
++|+++ +|+.. .++ ..+..+++|+.|+++.|.+++.+...
T Consensus 244 ~~L~L~---~N~l~-~lp-------~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 244 RELHLD---NNKLS-RVP-------AGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CEEECC---SSCCC-BCC-------TTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred CEEECC---CCcCe-ecC-------hhhhcCccCCEEECCCCCCCccChhH
Confidence 888887 55332 121 13566888888888877777655433
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.37 E-value=2e-14 Score=141.93 Aligned_cols=248 Identities=15% Similarity=0.110 Sum_probs=149.0
Q ss_pred HhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCC
Q 039096 75 LKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLT 154 (554)
Q Consensus 75 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~ 154 (554)
+..+++|++|++++| .+....+..+..+ ++|++|++++|.. +. .+. ...+++|+
T Consensus 30 ~~~~~~L~~L~L~~n-~l~~~~~~~~~~l----~~L~~L~Ls~n~l----~~---------~~~--------~~~l~~L~ 83 (317)
T 3o53_A 30 RQSAWNVKELDLSGN-PLSQISAADLAPF----TKLELLNLSSNVL----YE---------TLD--------LESLSTLR 83 (317)
T ss_dssp HTTGGGCSEEECTTS-CCCCCCHHHHTTC----TTCCEEECTTSCC----EE---------EEE--------ETTCTTCC
T ss_pred hccCCCCCEEECcCC-ccCcCCHHHhhCC----CcCCEEECCCCcC----Cc---------chh--------hhhcCCCC
Confidence 455678888888887 4555555566655 5888888887762 11 000 12567888
Q ss_pred EEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccc
Q 039096 155 LLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQL 234 (554)
Q Consensus 155 ~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~ 234 (554)
+|++++|. ++. + ...++|++|+++++ .+++... ..+++|+
T Consensus 84 ~L~Ls~n~--------------------l~~-----l-~~~~~L~~L~l~~n-~l~~~~~------~~~~~L~------- 123 (317)
T 3o53_A 84 TLDLNNNY--------------------VQE-----L-LVGPSIETLHAANN-NISRVSC------SRGQGKK------- 123 (317)
T ss_dssp EEECCSSE--------------------EEE-----E-EECTTCCEEECCSS-CCSEEEE------CCCSSCE-------
T ss_pred EEECcCCc--------------------ccc-----c-cCCCCcCEEECCCC-ccCCcCc------cccCCCC-------
Confidence 88887651 111 0 13378888888774 3644321 2244444
Q ss_pred cCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhc
Q 039096 235 HSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPI 314 (554)
Q Consensus 235 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~ 314 (554)
.|++++|. +++.....+ ..+++|+.|++++|. +++.....+...+ ++|++|++++|... .... . ..
T Consensus 124 -----~L~l~~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l-~~L~~L~L~~N~l~-~~~~---~-~~ 189 (317)
T 3o53_A 124 -----NIYLANNK-ITMLRDLDE-GCRSRVQYLDLKLNE-IDTVNFAELAASS-DTLEHLNLQYNFIY-DVKG---Q-VV 189 (317)
T ss_dssp -----EEECCSSC-CCSGGGBCT-GGGSSEEEEECTTSC-CCEEEGGGGGGGT-TTCCEEECTTSCCC-EEEC---C-CC
T ss_pred -----EEECCCCC-CCCccchhh-hccCCCCEEECCCCC-CCcccHHHHhhcc-CcCCEEECCCCcCc-cccc---c-cc
Confidence 56666665 444322222 236788888888887 5543333333334 78888888887643 2211 1 13
Q ss_pred CCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCC
Q 039096 315 RDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREK 394 (554)
Q Consensus 315 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~ 394 (554)
+++|++|+++.+.+...... + ..+++|+.|+++++. ++.++. .+..+++|+.|+++ ++
T Consensus 190 l~~L~~L~Ls~N~l~~l~~~-~-----------~~l~~L~~L~L~~N~---l~~l~~-~~~~l~~L~~L~l~---~N--- 247 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFMGPE-F-----------QSAAGVTWISLRNNK---LVLIEK-ALRFSQNLEHFDLR---GN--- 247 (317)
T ss_dssp CTTCCEEECCSSCCCEECGG-G-----------GGGTTCSEEECTTSC---CCEECT-TCCCCTTCCEEECT---TC---
T ss_pred cccCCEEECCCCcCCcchhh-h-----------cccCcccEEECcCCc---ccchhh-HhhcCCCCCEEEcc---CC---
Confidence 67788888877765443322 4 677888999887765 665543 36778888888887 55
Q ss_pred CCCCccccchhhhhccCCCccceeee-cCCcccc
Q 039096 395 PLLRDDKAWGLSCLTRYPRLSKLVLD-FGDTDGH 427 (554)
Q Consensus 395 ~~l~~~~~~~l~~l~~~~~L~~L~l~-c~~~~~~ 427 (554)
.... +.....+..+++|+.|+++ ++.+++.
T Consensus 248 ~~~~---~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 248 GFHC---GTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CCBH---HHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred CccC---cCHHHHHhccccceEEECCCchhccCC
Confidence 2111 2223445567888888887 6666554
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.35 E-value=8.7e-14 Score=137.08 Aligned_cols=265 Identities=15% Similarity=0.083 Sum_probs=150.4
Q ss_pred cCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCC-CCCHHHHHHHHHhCCChHhhHHHHhccCCCCCE
Q 039096 77 HCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSE-DYRPQEIIEIIAARPNLNKWAVSIATNCPRLTL 155 (554)
Q Consensus 77 ~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~ 155 (554)
..++|++|+++++.. .+|..+.. .|+.|+++++.... .+........ .. ...+++|++
T Consensus 41 ~~~~L~~l~l~~n~l---~~p~~~~~------~L~~L~L~~n~l~~~~~~~~~~~~~-----------~~-~~~l~~L~~ 99 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE---ADLGQFTD------IIKSLSLKRLTVRAARIPSRILFGA-----------LR-VLGISGLQE 99 (312)
T ss_dssp EEEECTTHHHHCCTT---CCCHHHHH------HHHHCCCCEEEEEEEECBHHHHHHH-----------HH-HHTTSCCCE
T ss_pred cCCCceeEeeccccc---ccHHHHHH------HHhhcccccccccCCCcCHHHHHHH-----------HH-hcCcCCccE
Confidence 456788888887743 44543332 26666666654211 1222211111 01 115789999
Q ss_pred EEecccccccccCCCCCCCCCccccCCCCHHHHHHH-HhCCCCCcEEEecCCCCCCCchhhHHHHHhc-CCCCcEeeccc
Q 039096 156 LHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQL-FSGLPLLEELALDVGKNVRDSGSASEALKSK-CVNLKGLKLGQ 233 (554)
Q Consensus 156 L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l-~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~-~~~L~~L~l~~ 233 (554)
|++++|. +++.....+ ...+++|++|+++++ .+++....+..+... +++|+
T Consensus 100 L~L~~n~--------------------l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~------ 152 (312)
T 1wwl_A 100 LTLENLE--------------------VTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLK------ 152 (312)
T ss_dssp EEEEEEB--------------------CBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCC------
T ss_pred EEccCCc--------------------ccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCc------
Confidence 9998762 111011111 246789999999885 476653222333111 15555
Q ss_pred ccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHH--HHhcCCccEEEEeccCCCChhHHHHHH
Q 039096 234 LHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLA--SLLRETLVVIKIYCCENLGAVASCKAL 311 (554)
Q Consensus 234 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~--~~~~~~L~~L~l~~c~~~~~~~~l~~l 311 (554)
+|++++|. ++......+. .+++|++|++++|...+..++.... ..+ ++|++|++++|...........+
T Consensus 153 ------~L~L~~N~-l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 153 ------VLSIAQAH-SLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKF-PTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp ------EEEEESCS-CCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSC-TTCCEEECTTSCCCCHHHHHHHH
T ss_pred ------EEEeeCCC-CccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccC-CCCCEEECCCCcCcchHHHHHHH
Confidence 55555554 3332222222 3788889999888733222322221 334 78889998887643211222234
Q ss_pred hhcCCCccEEEeeeeeccccch-hhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCC
Q 039096 312 KPIRDRIQKLHIDCVWDGIRSS-EAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGD 390 (554)
Q Consensus 312 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~ 390 (554)
...+++|++|+++.+.+..... ..+ ..+++|++|++++|. ++.++.. +. ++|+.|+++ +
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~-----------~~l~~L~~L~Ls~N~---l~~ip~~-~~--~~L~~L~Ls---~ 283 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSC-----------DWPSQLNSLNLSFTG---LKQVPKG-LP--AKLSVLDLS---Y 283 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCC-----------CCCTTCCEEECTTSC---CSSCCSS-CC--SEEEEEECC---S
T ss_pred HhcCCCCCEEECCCCcCCcccchhhh-----------hhcCCCCEEECCCCc---cChhhhh-cc--CCceEEECC---C
Confidence 4557889999997776554432 223 457899999998765 6655433 33 789999997 5
Q ss_pred CCCCCCCCccccchhhhhccCCCccceeeecCCcccc
Q 039096 391 TREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGH 427 (554)
Q Consensus 391 c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~ 427 (554)
+ .++ +. ..+..+++|+.|+++.|.+++.
T Consensus 284 N----~l~---~~--p~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 284 N----RLD---RN--PSPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp S----CCC---SC--CCTTTSCEEEEEECTTCTTTCC
T ss_pred C----CCC---CC--hhHhhCCCCCEEeccCCCCCCC
Confidence 5 333 11 1256688999999987777653
No 61
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.34 E-value=4.5e-14 Score=139.15 Aligned_cols=201 Identities=15% Similarity=0.078 Sum_probs=126.9
Q ss_pred HhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccC------------cccEEEecCCCCCCHHHHHHHHh
Q 039096 192 FSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHS------------WLESLSIKNCGDLSDMSLVAIGR 259 (554)
Q Consensus 192 ~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~------------~L~~L~l~~~~~l~~~~l~~l~~ 259 (554)
...+++|++|++++++++++..+. .+ .++++|++|+++++.- +|++|++++|. +++.....+ .
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~--~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~-~ 146 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPP--AI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLPPSI-S 146 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCG--GG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-EESCCCGGG-G
T ss_pred HhCCCCCCeeeCCCCCcccccCCh--hH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc-cCCcCChHH-h
Confidence 357899999999865667655432 55 7899999999876431 78888888876 442222233 3
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccC
Q 039096 260 GCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATG 339 (554)
Q Consensus 260 ~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 339 (554)
.+++|++|++++|. +++.....+ ..++++|++|+++++...+.. .......+ |++|+++.+.+.......+
T Consensus 147 ~l~~L~~L~L~~N~-l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~---~~~~~~l~-L~~L~Ls~N~l~~~~~~~~--- 217 (313)
T 1ogq_A 147 SLPNLVGITFDGNR-ISGAIPDSY-GSFSKLFTSMTISRNRLTGKI---PPTFANLN-LAFVDLSRNMLEGDASVLF--- 217 (313)
T ss_dssp GCTTCCEEECCSSC-CEEECCGGG-GCCCTTCCEEECCSSEEEEEC---CGGGGGCC-CSEEECCSSEEEECCGGGC---
T ss_pred cCCCCCeEECcCCc-ccCcCCHHH-hhhhhcCcEEECcCCeeeccC---ChHHhCCc-ccEEECcCCcccCcCCHHH---
Confidence 37888888888887 432111111 122137888888777532111 11112234 8888887776555555555
Q ss_pred CccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceee
Q 039096 340 NTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVL 419 (554)
Q Consensus 340 ~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l 419 (554)
..+++|+.|+++++. ++..... +..+++|++|+++ +|.. + +.....+..+++|+.|++
T Consensus 218 --------~~l~~L~~L~L~~N~---l~~~~~~-~~~l~~L~~L~Ls---~N~l----~---~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 218 --------GSDKNTQKIHLAKNS---LAFDLGK-VGLSKNLNGLDLR---NNRI----Y---GTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp --------CTTSCCSEEECCSSE---ECCBGGG-CCCCTTCCEEECC---SSCC----E---ECCCGGGGGCTTCCEEEC
T ss_pred --------hcCCCCCEEECCCCc---eeeecCc-ccccCCCCEEECc---CCcc----c---CcCChHHhcCcCCCEEEC
Confidence 678888888887665 5444333 6677888888887 5532 2 222245667888888888
Q ss_pred ecCCccccc
Q 039096 420 DFGDTDGHN 428 (554)
Q Consensus 420 ~c~~~~~~~ 428 (554)
+.|.+++..
T Consensus 276 s~N~l~~~i 284 (313)
T 1ogq_A 276 SFNNLCGEI 284 (313)
T ss_dssp CSSEEEEEC
T ss_pred cCCcccccC
Confidence 877777543
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.34 E-value=1.2e-13 Score=137.06 Aligned_cols=231 Identities=14% Similarity=0.108 Sum_probs=115.1
Q ss_pred cCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEE
Q 039096 77 HCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLL 156 (554)
Q Consensus 77 ~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L 156 (554)
..+++++|+++++. +. .+|..+..+ ++|++|++++|... . .|. .+ ..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~-l~-~lp~~l~~l----~~L~~L~L~~n~l~-~------------lp~------~~-~~l~~L~~L 132 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LP-QFPDQAFRL----SHLQHMTIDAAGLM-E------------LPD------TM-QQFAGLETL 132 (328)
T ss_dssp TSTTCCEEEEESSC-CS-SCCSCGGGG----TTCSEEEEESSCCC-C------------CCS------CG-GGGTTCSEE
T ss_pred cccceeEEEccCCC-ch-hcChhhhhC----CCCCEEECCCCCcc-c------------hhH------HH-hccCCCCEE
Confidence 35788999998873 33 455555555 58999999887632 1 111 11 256788888
Q ss_pred EecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccC
Q 039096 157 HLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHS 236 (554)
Q Consensus 157 ~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~ 236 (554)
++++|. ++ .+......+++|++|++++|+.++.... .+ ..
T Consensus 133 ~Ls~n~--------------------l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~---~~-------~~-------- 172 (328)
T 4fcg_A 133 TLARNP--------------------LR--ALPASIASLNRLRELSIRACPELTELPE---PL-------AS-------- 172 (328)
T ss_dssp EEESCC--------------------CC--CCCGGGGGCTTCCEEEEEEETTCCCCCS---CS-------EE--------
T ss_pred ECCCCc--------------------cc--cCcHHHhcCcCCCEEECCCCCCccccCh---hH-------hh--------
Confidence 887651 11 1111234678888888888664432211 11 00
Q ss_pred cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCC
Q 039096 237 WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRD 316 (554)
Q Consensus 237 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~ 316 (554)
..+.+. ..++++|++|++++|. ++ .+......+ ++|++|++++|...... .....++
T Consensus 173 ----~~~~~~-----------~~~l~~L~~L~L~~n~-l~--~lp~~l~~l-~~L~~L~L~~N~l~~l~----~~l~~l~ 229 (328)
T 4fcg_A 173 ----TDASGE-----------HQGLVNLQSLRLEWTG-IR--SLPASIANL-QNLKSLKIRNSPLSALG----PAIHHLP 229 (328)
T ss_dssp ----EC-CCC-----------EEESTTCCEEEEEEEC-CC--CCCGGGGGC-TTCCEEEEESSCCCCCC----GGGGGCT
T ss_pred ----ccchhh-----------hccCCCCCEEECcCCC-cC--cchHhhcCC-CCCCEEEccCCCCCcCc----hhhccCC
Confidence 000000 0113444444444443 22 111111122 44555555544322111 1122355
Q ss_pred CccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCC
Q 039096 317 RIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPL 396 (554)
Q Consensus 317 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~ 396 (554)
+|++|+++.+.+....+..+ ..+++|++|++++|. +....+..+..+++|+.|+++ +|.....
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~-----------~~l~~L~~L~L~~n~---~~~~~p~~~~~l~~L~~L~L~---~n~~~~~ 292 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIF-----------GGRAPLKRLILKDCS---NLLTLPLDIHRLTQLEKLDLR---GCVNLSR 292 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCT-----------TCCCCCCEEECTTCT---TCCBCCTTGGGCTTCCEEECT---TCTTCCC
T ss_pred CCCEEECcCCcchhhhHHHh-----------cCCCCCCEEECCCCC---chhhcchhhhcCCCCCEEeCC---CCCchhh
Confidence 56666665443333333334 566677777776655 233333345666777777776 5533322
Q ss_pred CCccccchhhhhccCCCccceeee
Q 039096 397 LRDDKAWGLSCLTRYPRLSKLVLD 420 (554)
Q Consensus 397 l~~~~~~~l~~l~~~~~L~~L~l~ 420 (554)
++ ..+.++++|+.+.+.
T Consensus 293 iP-------~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 293 LP-------SLIAQLPANCIILVP 309 (328)
T ss_dssp CC-------GGGGGSCTTCEEECC
T ss_pred cc-------HHHhhccCceEEeCC
Confidence 22 345566666666665
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.33 E-value=1.4e-11 Score=131.95 Aligned_cols=261 Identities=17% Similarity=0.109 Sum_probs=141.0
Q ss_pred CCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCCcEEEecCCCCCCCChhHHHhhcC
Q 039096 25 DAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCLTSVDLSSFYHWTEDLPPVLKAYP 104 (554)
Q Consensus 25 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~ 104 (554)
.+++.|+++++ .+. . + |... .++|+.|+++++. +..+-..+++|++|+|++|. ++ .+|
T Consensus 40 ~~l~~L~ls~n-~L~-~-l--p~~l--~~~L~~L~L~~N~------l~~lp~~l~~L~~L~Ls~N~-l~-~lp------- 97 (622)
T 3g06_A 40 NGNAVLNVGES-GLT-T-L--PDCL--PAHITTLVIPDNN------LTSLPALPPELRTLEVSGNQ-LT-SLP------- 97 (622)
T ss_dssp HCCCEEECCSS-CCS-C-C--CSCC--CTTCSEEEECSCC------CSCCCCCCTTCCEEEECSCC-CS-CCC-------
T ss_pred CCCcEEEecCC-CcC-c-c--Chhh--CCCCcEEEecCCC------CCCCCCcCCCCCEEEcCCCc-CC-cCC-------
Confidence 46899999988 343 2 2 2221 2577777777332 11121256788888888773 22 222
Q ss_pred cCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccCCCC
Q 039096 105 DKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARIS 184 (554)
Q Consensus 105 ~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~ 184 (554)
..+++|++|++++|... ..+. .+++|+.|++++|. ++
T Consensus 98 ~~l~~L~~L~Ls~N~l~-------------~l~~----------~l~~L~~L~L~~N~--------------------l~ 134 (622)
T 3g06_A 98 VLPPGLLELSIFSNPLT-------------HLPA----------LPSGLCKLWIFGNQ--------------------LT 134 (622)
T ss_dssp CCCTTCCEEEECSCCCC-------------CCCC----------CCTTCCEEECCSSC--------------------CS
T ss_pred CCCCCCCEEECcCCcCC-------------CCCC----------CCCCcCEEECCCCC--------------------CC
Confidence 23368888888877521 1111 35678888887641 11
Q ss_pred HHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCC
Q 039096 185 EEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKL 264 (554)
Q Consensus 185 ~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L 264 (554)
. +...+++|++|++++| .++... ...++|+. |++++|. ++... ..+++|
T Consensus 135 ~-----lp~~l~~L~~L~Ls~N-~l~~l~-------~~~~~L~~------------L~L~~N~-l~~l~-----~~~~~L 183 (622)
T 3g06_A 135 S-----LPVLPPGLQELSVSDN-QLASLP-------ALPSELCK------------LWAYNNQ-LTSLP-----MLPSGL 183 (622)
T ss_dssp C-----CCCCCTTCCEEECCSS-CCSCCC-------CCCTTCCE------------EECCSSC-CSCCC-----CCCTTC
T ss_pred c-----CCCCCCCCCEEECcCC-cCCCcC-------CccCCCCE------------EECCCCC-CCCCc-----ccCCCC
Confidence 1 1113478888888775 354321 22344554 4455444 33211 235677
Q ss_pred cEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccch
Q 039096 265 VKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTI 344 (554)
Q Consensus 265 ~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 344 (554)
+.|++++|. ++. +. ... ++|+.|++++|... . +....++|++|+++++.+....
T Consensus 184 ~~L~Ls~N~-l~~--l~---~~~-~~L~~L~L~~N~l~-~------l~~~~~~L~~L~Ls~N~L~~lp------------ 237 (622)
T 3g06_A 184 QELSVSDNQ-LAS--LP---TLP-SELYKLWAYNNRLT-S------LPALPSGLKELIVSGNRLTSLP------------ 237 (622)
T ss_dssp CEEECCSSC-CSC--CC---CCC-TTCCEEECCSSCCS-S------CCCCCTTCCEEECCSSCCSCCC------------
T ss_pred cEEECCCCC-CCC--CC---Ccc-chhhEEECcCCccc-c------cCCCCCCCCEEEccCCccCcCC------------
Confidence 777777766 432 11 112 56777777766433 1 1122466777777665433211
Q ss_pred hhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCc
Q 039096 345 FSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDT 424 (554)
Q Consensus 345 ~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~ 424 (554)
..+++|++|++++|. ++.++. .+++|+.|+++ +|... .++ ..+..+++|+.|+++.|.+
T Consensus 238 ---~~l~~L~~L~Ls~N~---L~~lp~----~~~~L~~L~Ls---~N~L~-~lp-------~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 238 ---VLPSELKELMVSGNR---LTSLPM----LPSGLLSLSVY---RNQLT-RLP-------ESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp ---CCCTTCCEEECCSSC---CSCCCC----CCTTCCEEECC---SSCCC-SCC-------GGGGGSCTTCEEECCSCCC
T ss_pred ---CCCCcCcEEECCCCC---CCcCCc----ccccCcEEeCC---CCCCC-cCC-------HHHhhccccCEEEecCCCC
Confidence 235677777776554 554443 45677777776 55322 111 2355677777777776666
Q ss_pred cccc
Q 039096 425 DGHN 428 (554)
Q Consensus 425 ~~~~ 428 (554)
++..
T Consensus 297 ~~~~ 300 (622)
T 3g06_A 297 SERT 300 (622)
T ss_dssp CHHH
T ss_pred CCcC
Confidence 5543
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.30 E-value=1.8e-12 Score=138.77 Aligned_cols=250 Identities=17% Similarity=0.135 Sum_probs=139.6
Q ss_pred eeEEEEecCCCchhchhhc-CCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCCcE
Q 039096 5 RTSITLRGNACNLNIVPLC-FDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCLTS 83 (554)
Q Consensus 5 r~~L~l~~~~~~l~~l~~~-~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~~ 83 (554)
-+.|+++++. +..+|.. +++|+.|+++++ .+. .+ |. .+++|+.|+++++. +..+-..+++|++
T Consensus 42 l~~L~ls~n~--L~~lp~~l~~~L~~L~L~~N-~l~--~l--p~---~l~~L~~L~Ls~N~------l~~lp~~l~~L~~ 105 (622)
T 3g06_A 42 NAVLNVGESG--LTTLPDCLPAHITTLVIPDN-NLT--SL--PA---LPPELRTLEVSGNQ------LTSLPVLPPGLLE 105 (622)
T ss_dssp CCEEECCSSC--CSCCCSCCCTTCSEEEECSC-CCS--CC--CC---CCTTCCEEEECSCC------CSCCCCCCTTCCE
T ss_pred CcEEEecCCC--cCccChhhCCCCcEEEecCC-CCC--CC--CC---cCCCCCEEEcCCCc------CCcCCCCCCCCCE
Confidence 3578887663 4567764 479999999998 443 12 22 57899999999442 2222226899999
Q ss_pred EEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEeccccc
Q 039096 84 VDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETST 163 (554)
Q Consensus 84 L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~ 163 (554)
|++++|. +.. +| ...++|++|++++|... ..| ..+++|++|++++|.
T Consensus 106 L~Ls~N~-l~~-l~-------~~l~~L~~L~L~~N~l~-------------~lp----------~~l~~L~~L~Ls~N~- 152 (622)
T 3g06_A 106 LSIFSNP-LTH-LP-------ALPSGLCKLWIFGNQLT-------------SLP----------VLPPGLQELSVSDNQ- 152 (622)
T ss_dssp EEECSCC-CCC-CC-------CCCTTCCEEECCSSCCS-------------CCC----------CCCTTCCEEECCSSC-
T ss_pred EECcCCc-CCC-CC-------CCCCCcCEEECCCCCCC-------------cCC----------CCCCCCCEEECcCCc-
Confidence 9999873 232 22 23479999999988621 111 135889999998751
Q ss_pred ccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEe
Q 039096 164 LAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSI 243 (554)
Q Consensus 164 l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l 243 (554)
++. +....++|+.|+++++ .++... ..+++|+.|+++++
T Consensus 153 -------------------l~~-----l~~~~~~L~~L~L~~N-~l~~l~-------~~~~~L~~L~Ls~N--------- 191 (622)
T 3g06_A 153 -------------------LAS-----LPALPSELCKLWAYNN-QLTSLP-------MLPSGLQELSVSDN--------- 191 (622)
T ss_dssp -------------------CSC-----CCCCCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS---------
T ss_pred -------------------CCC-----cCCccCCCCEEECCCC-CCCCCc-------ccCCCCcEEECCCC---------
Confidence 111 0123568899999774 464421 34566665555443
Q ss_pred cCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEe
Q 039096 244 KNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHI 323 (554)
Q Consensus 244 ~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l 323 (554)
. ++. +....++|+.|++++|. ++. +...+ ++|+.|++++|... .. ...+++|++|++
T Consensus 192 ---~-l~~-----l~~~~~~L~~L~L~~N~-l~~-----l~~~~-~~L~~L~Ls~N~L~-~l------p~~l~~L~~L~L 248 (622)
T 3g06_A 192 ---Q-LAS-----LPTLPSELYKLWAYNNR-LTS-----LPALP-SGLKELIVSGNRLT-SL------PVLPSELKELMV 248 (622)
T ss_dssp ---C-CSC-----CCCCCTTCCEEECCSSC-CSS-----CCCCC-TTCCEEECCSSCCS-CC------CCCCTTCCEEEC
T ss_pred ---C-CCC-----CCCccchhhEEECcCCc-ccc-----cCCCC-CCCCEEEccCCccC-cC------CCCCCcCcEEEC
Confidence 2 221 00113456666666554 331 00111 45666666555322 11 123455666666
Q ss_pred eeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEe
Q 039096 324 DCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIK 386 (554)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~ 386 (554)
+.+.+.... ..+++|+.|++++|. ++.++ ..+.++++|+.|+++
T Consensus 249 s~N~L~~lp---------------~~~~~L~~L~Ls~N~---L~~lp-~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 249 SGNRLTSLP---------------MLPSGLLSLSVYRNQ---LTRLP-ESLIHLSSETTVNLE 292 (622)
T ss_dssp CSSCCSCCC---------------CCCTTCCEEECCSSC---CCSCC-GGGGGSCTTCEEECC
T ss_pred CCCCCCcCC---------------cccccCcEEeCCCCC---CCcCC-HHHhhccccCEEEec
Confidence 555432111 134566666665544 44443 235566666666665
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.29 E-value=1.4e-13 Score=135.10 Aligned_cols=215 Identities=13% Similarity=0.061 Sum_probs=111.2
Q ss_pred CCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEe
Q 039096 150 CPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGL 229 (554)
Q Consensus 150 ~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L 229 (554)
.++|++|+++++. ++... ..++..+++|++|+++++ .++..+.....+ ..+++|++|
T Consensus 27 ~~~l~~L~L~~n~--------------------l~~i~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-~~~~~L~~L 83 (306)
T 2z66_A 27 PSSATRLELESNK--------------------LQSLP-HGVFDKLTQLTKLSLSSN-GLSFKGCCSQSD-FGTTSLKYL 83 (306)
T ss_dssp CTTCCEEECCSSC--------------------CCCCC-TTTTTTCTTCSEEECCSS-CCCEEEEEEHHH-HSCSCCCEE
T ss_pred CCCCCEEECCCCc--------------------cCccC-HhHhhccccCCEEECCCC-ccCcccCccccc-ccccccCEE
Confidence 3689999998751 11100 112357899999999885 475433111234 468888888
Q ss_pred ecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHH
Q 039096 230 KLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCK 309 (554)
Q Consensus 230 ~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~ 309 (554)
+++++. +..+.-. ...+++|++|++++|. +++.........+ ++|++|++++|.... . ..
T Consensus 84 ~Ls~n~--i~~l~~~-------------~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l-~~L~~L~l~~n~l~~-~--~~ 143 (306)
T 2z66_A 84 DLSFNG--VITMSSN-------------FLGLEQLEHLDFQHSN-LKQMSEFSVFLSL-RNLIYLDISHTHTRV-A--FN 143 (306)
T ss_dssp ECCSCS--EEEEEEE-------------EETCTTCCEEECTTSE-EESSTTTTTTTTC-TTCCEEECTTSCCEE-C--ST
T ss_pred ECCCCc--cccChhh-------------cCCCCCCCEEECCCCc-ccccccchhhhhc-cCCCEEECCCCcCCc-c--ch
Confidence 877653 1111100 0125566666666654 3221110111222 566666666654221 1 01
Q ss_pred HHhhcCCCccEEEeeeeeccc-cchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeee
Q 039096 310 ALKPIRDRIQKLHIDCVWDGI-RSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKME 388 (554)
Q Consensus 310 ~l~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~ 388 (554)
.....+++|++|+++.+.+.. .....+ ..+++|++|++++|. ++.+....+..+++|++|+++
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----------~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~-- 207 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPDIF-----------TELRNLTFLDLSQCQ---LEQLSPTAFNSLSSLQVLNMS-- 207 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCC-----------TTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT--
T ss_pred hhcccCcCCCEEECCCCccccccchhHH-----------hhCcCCCEEECCCCC---cCCcCHHHhcCCCCCCEEECC--
Confidence 112235666677665554333 222333 556667777766554 555555556666667777765
Q ss_pred CCCCCCCCCCccccchhhhhccCCCccceeeecCCcccccccc
Q 039096 389 GDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQAA 431 (554)
Q Consensus 389 ~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~~~ 431 (554)
++ .++ ......+..+++|+.|+++.|.+++.....
T Consensus 208 -~N----~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 208 -HN----NFF---SLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp -TS----CCS---BCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred -CC----ccC---ccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 44 222 111123445666777777655665554433
No 66
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.29 E-value=9.9e-13 Score=129.36 Aligned_cols=239 Identities=15% Similarity=0.066 Sum_probs=145.1
Q ss_pred CccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHH
Q 039096 109 ILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGL 188 (554)
Q Consensus 109 ~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l 188 (554)
.++.+.+.++. +++..+..+.. .. .+++|++|++++|.. +....
T Consensus 65 ~l~~l~l~~~~----~~~~~~~~~~~-----------~~-~~~~L~~L~l~~n~l--------------------~~~~~ 108 (310)
T 4glp_A 65 RVRRLTVGAAQ----VPAQLLVGALR-----------VL-AYSRLKELTLEDLKI--------------------TGTMP 108 (310)
T ss_dssp CCCEEEECSCC----CBHHHHHHHHH-----------HH-HHSCCCEEEEESCCC--------------------BSCCC
T ss_pred ceeEEEEeCCc----CCHHHHHHHHH-----------hc-ccCceeEEEeeCCEe--------------------ccchh
Confidence 58889998776 67766655521 11 357799999987621 11111
Q ss_pred HHHH-hCCCCCcEEEecCCCCCCCchhhHH--HHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCc
Q 039096 189 IQLF-SGLPLLEELALDVGKNVRDSGSASE--ALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLV 265 (554)
Q Consensus 189 ~~l~-~~~~~L~~L~L~~c~~l~~~~~~l~--~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~ 265 (554)
..+. ..+++|++|+++++. +++..+.+. .+ ..+++|++ |++++|. ++......+ ..+++|+
T Consensus 109 ~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~-~~~~~L~~------------L~Ls~n~-l~~~~~~~~-~~l~~L~ 172 (310)
T 4glp_A 109 PLPLEATGLALSSLRLRNVS-WATGRSWLAELQQ-WLKPGLKV------------LSIAQAH-SPAFSCEQV-RAFPALT 172 (310)
T ss_dssp CCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHT-TBCSCCCE------------EEEECCS-SCCCCTTSC-CCCTTCC
T ss_pred hhhhhccCCCCCEEEeeccc-ccchhhhhHHHHh-hhccCCCE------------EEeeCCC-cchhhHHHh-ccCCCCC
Confidence 1111 467899999999854 765433222 22 35666664 5555554 332211122 2478899
Q ss_pred EEEecCCCCCCHHHHHHHH--HHhcCCccEEEEeccCCCChhHH-HHHHhhcCCCccEEEeeeeeccccchhhhccCCcc
Q 039096 266 KFEVEGCKNITVDGLRTLA--SLLRETLVVIKIYCCENLGAVAS-CKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTS 342 (554)
Q Consensus 266 ~L~L~~c~~i~~~~~~~l~--~~~~~~L~~L~l~~c~~~~~~~~-l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 342 (554)
+|++++|...++.++.... ..+ ++|++|++++|... .... ...+...+++|++|+++.+.++...+..+
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~------ 244 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKF-PAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA------ 244 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSS-CCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC------
T ss_pred EEECCCCCCccchhhhHHHhhhcC-CCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhH------
Confidence 9999998843333332211 234 78999999888643 3222 22234567889999998887665544444
Q ss_pred chhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecC
Q 039096 343 TIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFG 422 (554)
Q Consensus 343 ~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~ 422 (554)
.....+++|++|++++|. ++.++.. + .++|+.|+++ ++ .++ . +..+..+++|+.|+++.|
T Consensus 245 --~~~~~~~~L~~L~Ls~N~---l~~lp~~-~--~~~L~~L~Ls---~N----~l~---~--~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 245 --PRCMWSSALNSLNLSFAG---LEQVPKG-L--PAKLRVLDLS---SN----RLN---R--APQPDELPEVDNLTLDGN 304 (310)
T ss_dssp --SSCCCCTTCCCEECCSSC---CCSCCSC-C--CSCCSCEECC---SC----CCC---S--CCCTTSCCCCSCEECSST
T ss_pred --HhccCcCcCCEEECCCCC---CCchhhh-h--cCCCCEEECC---CC----cCC---C--CchhhhCCCccEEECcCC
Confidence 111234799999998766 6655443 3 3799999998 55 333 1 112456899999999988
Q ss_pred Ccccc
Q 039096 423 DTDGH 427 (554)
Q Consensus 423 ~~~~~ 427 (554)
.+++.
T Consensus 305 ~l~~~ 309 (310)
T 4glp_A 305 PFLVP 309 (310)
T ss_dssp TTSCC
T ss_pred CCCCC
Confidence 77653
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.29 E-value=5.4e-13 Score=138.04 Aligned_cols=195 Identities=15% Similarity=0.125 Sum_probs=122.5
Q ss_pred hCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccC------------cccEEEecCCCCCCHHHHHHHHhc
Q 039096 193 SGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHS------------WLESLSIKNCGDLSDMSLVAIGRG 260 (554)
Q Consensus 193 ~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~------------~L~~L~l~~~~~l~~~~l~~l~~~ 260 (554)
..+++|++|+|+++ .+++..+ ..+ .++++|+.|+++++.- +|++|++++|. ++......+ ..
T Consensus 85 ~~l~~L~~L~Ls~n-~i~~i~~--~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~-~~ 158 (440)
T 3zyj_A 85 KHLRHLEILQLSRN-HIRTIEI--GAF-NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAF-NR 158 (440)
T ss_dssp SSCSSCCEEECCSS-CCCEECG--GGG-TTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTT-TT
T ss_pred hCCCCCCEEECCCC-cCCccCh--hhc-cCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHh-hh
Confidence 57899999999885 4765442 255 6789999988876531 77788888776 443222222 23
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCC
Q 039096 261 CSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGN 340 (554)
Q Consensus 261 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 340 (554)
+++|+.|++++|..++..... ....+ ++|++|++++|... ... . ...+++|++|+++.+.+.......+
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~-~~~~l-~~L~~L~L~~n~l~-~~~---~-~~~l~~L~~L~Ls~N~l~~~~~~~~---- 227 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEG-AFEGL-SNLRYLNLAMCNLR-EIP---N-LTPLIKLDELDLSGNHLSAIRPGSF---- 227 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTT-TTTTC-SSCCEEECTTSCCS-SCC---C-CTTCSSCCEEECTTSCCCEECTTTT----
T ss_pred CcccCEeCCCCCCCcceeCcc-hhhcc-cccCeecCCCCcCc-ccc---c-cCCCcccCEEECCCCccCccChhhh----
Confidence 778888888876544321111 11223 67888888777533 221 1 2346778888887666555545555
Q ss_pred ccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeee
Q 039096 341 TSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLD 420 (554)
Q Consensus 341 ~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~ 420 (554)
..+++|++|+++++. ++.+....+..+++|+.|+++ ++ .++ ......+..+++|+.|+++
T Consensus 228 -------~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~---~N----~l~---~~~~~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 228 -------QGLMHLQKLWMIQSQ---IQVIERNAFDNLQSLVEINLA---HN----NLT---LLPHDLFTPLHHLERIHLH 287 (440)
T ss_dssp -------TTCTTCCEEECTTCC---CCEECTTSSTTCTTCCEEECT---TS----CCC---CCCTTTTSSCTTCCEEECC
T ss_pred -------ccCccCCEEECCCCc---eeEEChhhhcCCCCCCEEECC---CC----CCC---ccChhHhccccCCCEEEcC
Confidence 677888888886655 666666667778888888886 55 233 2222345557788888877
Q ss_pred cCCc
Q 039096 421 FGDT 424 (554)
Q Consensus 421 c~~~ 424 (554)
.|.+
T Consensus 288 ~Np~ 291 (440)
T 3zyj_A 288 HNPW 291 (440)
T ss_dssp SSCE
T ss_pred CCCc
Confidence 5543
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.28 E-value=6.5e-13 Score=137.92 Aligned_cols=217 Identities=17% Similarity=0.119 Sum_probs=128.6
Q ss_pred CCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEe
Q 039096 150 CPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGL 229 (554)
Q Consensus 150 ~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L 229 (554)
.++++.|+++++. ++.... ..+..+++|++|+|+++ .+++..+ ..+ .++++|+.|
T Consensus 74 ~~~l~~L~L~~n~--------------------i~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~--~~~-~~l~~L~~L 128 (452)
T 3zyi_A 74 PSNTRYLNLMENN--------------------IQMIQA-DTFRHLHHLEVLQLGRN-SIRQIEV--GAF-NGLASLNTL 128 (452)
T ss_dssp CTTCSEEECCSSC--------------------CCEECT-TTTTTCTTCCEEECCSS-CCCEECT--TTT-TTCTTCCEE
T ss_pred CCCccEEECcCCc--------------------CceECH-HHcCCCCCCCEEECCCC-ccCCcCh--hhc-cCcccCCEE
Confidence 3689999998751 221111 11347899999999885 4765432 245 678899988
Q ss_pred ecccccC------------cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEe
Q 039096 230 KLGQLHS------------WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIY 297 (554)
Q Consensus 230 ~l~~~~~------------~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~ 297 (554)
+++++.- +|++|++++|. ++......+ ..+++|+.|++++|..++...... ...+ ++|++|+++
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~-~~~l-~~L~~L~L~ 204 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAF-NRVPSLMRLDLGELKKLEYISEGA-FEGL-FNLKYLNLG 204 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTT-TTCTTCCEEECCCCTTCCEECTTT-TTTC-TTCCEEECT
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHH-hcCCcccEEeCCCCCCccccChhh-ccCC-CCCCEEECC
Confidence 8876531 67777777776 443222222 236777777777765443211111 1123 677777777
Q ss_pred ccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCC
Q 039096 298 CCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDEC 377 (554)
Q Consensus 298 ~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~ 377 (554)
+|... ... . ...+++|++|+++.+.+.......+ ..+++|+.|+++++. ++.+....+..+
T Consensus 205 ~n~l~-~~~---~-~~~l~~L~~L~Ls~N~l~~~~~~~~-----------~~l~~L~~L~L~~n~---l~~~~~~~~~~l 265 (452)
T 3zyi_A 205 MCNIK-DMP---N-LTPLVGLEELEMSGNHFPEIRPGSF-----------HGLSSLKKLWVMNSQ---VSLIERNAFDGL 265 (452)
T ss_dssp TSCCS-SCC---C-CTTCTTCCEEECTTSCCSEECGGGG-----------TTCTTCCEEECTTSC---CCEECTTTTTTC
T ss_pred CCccc-ccc---c-ccccccccEEECcCCcCcccCcccc-----------cCccCCCEEEeCCCc---CceECHHHhcCC
Confidence 76533 211 1 2245677777776665555444555 667777777776554 666666666777
Q ss_pred CCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCc
Q 039096 378 PILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDT 424 (554)
Q Consensus 378 ~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~ 424 (554)
++|+.|+++ +++ ++ ......+..+++|+.|+++.|.+
T Consensus 266 ~~L~~L~L~---~N~----l~---~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 266 ASLVELNLA---HNN----LS---SLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTCCEEECC---SSC----CS---CCCTTSSTTCTTCCEEECCSSCE
T ss_pred CCCCEEECC---CCc----CC---ccChHHhccccCCCEEEccCCCc
Confidence 777777776 442 22 11112344567777777775443
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.27 E-value=6.3e-13 Score=129.10 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=70.4
Q ss_pred CCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCC
Q 039096 196 PLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNI 275 (554)
Q Consensus 196 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i 275 (554)
++|++|+++++ .+++... ..+ ..+++|++|+++ +|. +++.....+ ..+++|++|++++|..+
T Consensus 32 ~~l~~L~l~~n-~i~~~~~--~~~-~~~~~L~~L~l~------------~n~-l~~~~~~~~-~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 32 AASQRIFLHGN-RISHVPA--ASF-RACRNLTILWLH------------SNV-LARIDAAAF-TGLALLEQLDLSDNAQL 93 (285)
T ss_dssp TTCSEEECTTS-CCCEECT--TTT-TTCTTCCEEECC------------SSC-CCEECTTTT-TTCTTCCEEECCSCTTC
T ss_pred CCceEEEeeCC-cCCccCH--HHc-ccCCCCCEEECC------------CCc-cceeCHhhc-CCccCCCEEeCCCCCCc
Confidence 57777777663 4655432 234 455555544443 332 222111112 22666777777766533
Q ss_pred CHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCce
Q 039096 276 TVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKE 355 (554)
Q Consensus 276 ~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 355 (554)
+......+ ..+ ++|++|++++|...... ......+++|++|+++.+.+.......+ ..+++|++
T Consensus 94 ~~~~~~~~-~~l-~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----------~~l~~L~~ 157 (285)
T 1ozn_A 94 RSVDPATF-HGL-GRLHTLHLDRCGLQELG---PGLFRGLAALQYLYLQDNALQALPDDTF-----------RDLGNLTH 157 (285)
T ss_dssp CCCCTTTT-TTC-TTCCEEECTTSCCCCCC---TTTTTTCTTCCEEECCSSCCCCCCTTTT-----------TTCTTCCE
T ss_pred cccCHHHh-cCC-cCCCEEECCCCcCCEEC---HhHhhCCcCCCEEECCCCcccccCHhHh-----------ccCCCccE
Confidence 32111111 112 55666666555422110 0112234556666655444333332323 44555666
Q ss_pred EEeecccCCccCccccccCcCCCCCCEEEEe
Q 039096 356 LSFWIEVGELLTPLPVAGLDECPILENIRIK 386 (554)
Q Consensus 356 L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~ 386 (554)
|+++++. ++.++...+..+++|+.|+++
T Consensus 158 L~l~~n~---l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 158 LFLHGNR---ISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp EECCSSC---CCEECTTTTTTCTTCCEEECC
T ss_pred EECCCCc---ccccCHHHhcCccccCEEECC
Confidence 6555443 444444445555555555555
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.25 E-value=4.2e-13 Score=140.45 Aligned_cols=249 Identities=15% Similarity=0.114 Sum_probs=145.5
Q ss_pred CcccHHHHHhc----CCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhh
Q 039096 67 FGAEFVPLLKH----CKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKW 142 (554)
Q Consensus 67 ~~~~l~~~~~~----~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L 142 (554)
+...+...+.. +++|++|+|++| .+....|..+..+ ++|++|+|++|.. +. .+.
T Consensus 18 ~~~~l~~~l~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l----~~L~~L~Ls~N~l----~~---------~~~---- 75 (487)
T 3oja_A 18 TDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPF----TKLELLNLSSNVL----YE---------TLD---- 75 (487)
T ss_dssp CTTTHHHHHHTTSTTGGGCCEEECCSS-CCCCCCGGGGTTC----TTCCEEECTTSCC----EE---------EEE----
T ss_pred chhhhHHHHHHhcccCCCccEEEeeCC-cCCCCCHHHHhCC----CCCCEEEeeCCCC----CC---------Ccc----
Confidence 34444444433 347888888877 4455545555544 5888888887762 11 000
Q ss_pred HHHHhccCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhc
Q 039096 143 AVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSK 222 (554)
Q Consensus 143 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~ 222 (554)
...+++|++|++++|. +++ + ...++|++|++++|. +++... ..
T Consensus 76 ----l~~l~~L~~L~Ls~N~--------------------l~~-----l-~~~~~L~~L~L~~N~-l~~~~~------~~ 118 (487)
T 3oja_A 76 ----LESLSTLRTLDLNNNY--------------------VQE-----L-LVGPSIETLHAANNN-ISRVSC------SR 118 (487)
T ss_dssp ----CTTCTTCCEEECCSSE--------------------EEE-----E-EECTTCCEEECCSSC-CCCEEE------CC
T ss_pred ----cccCCCCCEEEecCCc--------------------CCC-----C-CCCCCcCEEECcCCc-CCCCCc------cc
Confidence 1256788888887651 111 0 123788888887753 654331 22
Q ss_pred CCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCC
Q 039096 223 CVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENL 302 (554)
Q Consensus 223 ~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~ 302 (554)
+++|+ .|++++|. +++.....+. .+++|+.|++++|. +++.....+...+ ++|+.|++++|...
T Consensus 119 l~~L~------------~L~L~~N~-l~~~~~~~~~-~l~~L~~L~Ls~N~-l~~~~~~~l~~~l-~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 119 GQGKK------------NIYLANNK-ITMLRDLDEG-CRSRVQYLDLKLNE-IDTVNFAELAASS-DTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCE------------EEECCSSC-CCSGGGBCGG-GGSSEEEEECTTSC-CCEEEGGGGGGGT-TTCCEEECTTSCCC
T ss_pred cCCCC------------EEECCCCC-CCCCCchhhc-CCCCCCEEECCCCC-CCCcChHHHhhhC-CcccEEecCCCccc
Confidence 34444 56666665 4443222232 37888888888887 5543333333344 78888888887643
Q ss_pred ChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCE
Q 039096 303 GAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILEN 382 (554)
Q Consensus 303 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~ 382 (554)
...+ . ..+++|++|+++.+.++..... + ..+++|+.|++++|. +++++.. +..+++|+.
T Consensus 183 -~~~~---~-~~l~~L~~L~Ls~N~l~~~~~~-~-----------~~l~~L~~L~Ls~N~---l~~lp~~-l~~l~~L~~ 241 (487)
T 3oja_A 183 -DVKG---Q-VVFAKLKTLDLSSNKLAFMGPE-F-----------QSAAGVTWISLRNNK---LVLIEKA-LRFSQNLEH 241 (487)
T ss_dssp -EEEC---C-CCCTTCCEEECCSSCCCEECGG-G-----------GGGTTCSEEECTTSC---CCEECTT-CCCCTTCCE
T ss_pred -cccc---c-ccCCCCCEEECCCCCCCCCCHh-H-----------cCCCCccEEEecCCc---Ccccchh-hccCCCCCE
Confidence 2211 1 1367888888877765543332 4 577888888887665 6665443 677888888
Q ss_pred EEEeeeCCCCCCCCCCccccchhhhhccCCCccceeee
Q 039096 383 IRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLD 420 (554)
Q Consensus 383 L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~ 420 (554)
|+++ ++ .... +.....+..++.|+.+.++
T Consensus 242 L~l~---~N---~l~c---~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 242 FDLR---GN---GFHC---GTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECT---TC---CBCH---HHHHHHHTTCHHHHHHHHH
T ss_pred EEcC---CC---CCcC---cchHHHHHhCCCCcEEecc
Confidence 8887 54 2111 1122334456777777665
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.24 E-value=3.2e-12 Score=124.08 Aligned_cols=187 Identities=15% Similarity=0.066 Sum_probs=124.5
Q ss_pred hCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCC
Q 039096 193 SGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGC 272 (554)
Q Consensus 193 ~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c 272 (554)
..+++|++|+++++ .+++..+. .+ ..+++|++|+++ +|..++......+ ..+++|++|++++|
T Consensus 53 ~~~~~L~~L~l~~n-~l~~~~~~--~~-~~l~~L~~L~l~------------~n~~l~~~~~~~~-~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 53 RACRNLTILWLHSN-VLARIDAA--AF-TGLALLEQLDLS------------DNAQLRSVDPATF-HGLGRLHTLHLDRC 115 (285)
T ss_dssp TTCTTCCEEECCSS-CCCEECTT--TT-TTCTTCCEEECC------------SCTTCCCCCTTTT-TTCTTCCEEECTTS
T ss_pred ccCCCCCEEECCCC-ccceeCHh--hc-CCccCCCEEeCC------------CCCCccccCHHHh-cCCcCCCEEECCCC
Confidence 57899999999885 47654322 44 567777755554 4432222211222 23789999999998
Q ss_pred CCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCC
Q 039096 273 KNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKS 352 (554)
Q Consensus 273 ~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (554)
. ++..... ....+ ++|++|+++++....... .....+++|++|+++.+.+.......+ ..+++
T Consensus 116 ~-l~~~~~~-~~~~l-~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~-----------~~l~~ 178 (285)
T 1ozn_A 116 G-LQELGPG-LFRGL-AALQYLYLQDNALQALPD---DTFRDLGNLTHLFLHGNRISSVPERAF-----------RGLHS 178 (285)
T ss_dssp C-CCCCCTT-TTTTC-TTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCEECTTTT-----------TTCTT
T ss_pred c-CCEECHh-HhhCC-cCCCEEECCCCcccccCH---hHhccCCCccEEECCCCcccccCHHHh-----------cCccc
Confidence 7 4432111 12233 789999998886432111 122357889999998776655444445 67899
Q ss_pred CceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCccc
Q 039096 353 LKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDG 426 (554)
Q Consensus 353 L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~ 426 (554)
|++|+++++. ++......+..+++|+.|+++ ++ .++ +.....+..+++|+.|+++.|.+..
T Consensus 179 L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~---~n----~l~---~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 179 LDRLLLHQNR---VAHVHPHAFRDLGRLMTLYLF---AN----NLS---ALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCEEECCSSC---CCEECTTTTTTCTTCCEEECC---SS----CCS---CCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cCEEECCCCc---ccccCHhHccCcccccEeeCC---CC----cCC---cCCHHHcccCcccCEEeccCCCccC
Confidence 9999998776 777777778899999999998 55 344 3333457779999999999766653
No 72
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.23 E-value=2e-12 Score=134.28 Aligned_cols=206 Identities=13% Similarity=0.032 Sum_probs=145.5
Q ss_pred CCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccC------------cccEEEecCCCCCCHHHHHHHHhcCCC
Q 039096 196 PLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHS------------WLESLSIKNCGDLSDMSLVAIGRGCSK 263 (554)
Q Consensus 196 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~------------~L~~L~l~~~~~l~~~~l~~l~~~~~~ 263 (554)
+++++|+|+++ ++++..+ ..+ .++++|+.|+++++.- +|++|++++|. ++......+ ..+++
T Consensus 75 ~~l~~L~L~~n-~i~~~~~--~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQA--DTF-RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAF-EYLSK 148 (452)
T ss_dssp TTCSEEECCSS-CCCEECT--TTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTS-SSCTT
T ss_pred CCccEEECcCC-cCceECH--HHc-CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhh-cccCC
Confidence 68999999885 5765542 255 7899999999987541 89999999997 554322222 34899
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccc
Q 039096 264 LVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTST 343 (554)
Q Consensus 264 L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 343 (554)
|++|++++|. ++..... ....+ ++|++|++++|..++... . .....+++|++|+++.+.+... ..+
T Consensus 149 L~~L~L~~N~-l~~~~~~-~~~~l-~~L~~L~l~~~~~l~~i~-~-~~~~~l~~L~~L~L~~n~l~~~--~~~------- 214 (452)
T 3zyi_A 149 LRELWLRNNP-IESIPSY-AFNRV-PSLMRLDLGELKKLEYIS-E-GAFEGLFNLKYLNLGMCNIKDM--PNL------- 214 (452)
T ss_dssp CCEEECCSCC-CCEECTT-TTTTC-TTCCEEECCCCTTCCEEC-T-TTTTTCTTCCEEECTTSCCSSC--CCC-------
T ss_pred CCEEECCCCC-cceeCHh-HHhcC-CcccEEeCCCCCCccccC-h-hhccCCCCCCEEECCCCccccc--ccc-------
Confidence 9999999987 5421111 12234 899999999987764321 1 1233578899999977765432 334
Q ss_pred hhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCC
Q 039096 344 IFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGD 423 (554)
Q Consensus 344 ~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~ 423 (554)
..+++|++|+++++. ++.+....+..+++|+.|+++ ++ .+. ......+..+++|+.|+++.|.
T Consensus 215 ----~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~---~n----~l~---~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 215 ----TPLVGLEELEMSGNH---FPEIRPGSFHGLSSLKKLWVM---NS----QVS---LIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp ----TTCTTCCEEECTTSC---CSEECGGGGTTCTTCCEEECT---TS----CCC---EECTTTTTTCTTCCEEECCSSC
T ss_pred ----cccccccEEECcCCc---CcccCcccccCccCCCEEEeC---CC----cCc---eECHHHhcCCCCCCEEECCCCc
Confidence 678999999998776 778877888999999999997 55 344 3333457779999999999888
Q ss_pred cccccccccccCCCC
Q 039096 424 TDGHNQAAPYKAADL 438 (554)
Q Consensus 424 ~~~~~~~~~~~~~~L 438 (554)
+++........++.|
T Consensus 278 l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 278 LSSLPHDLFTPLRYL 292 (452)
T ss_dssp CSCCCTTSSTTCTTC
T ss_pred CCccChHHhccccCC
Confidence 887665444444444
No 73
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.23 E-value=2.7e-13 Score=133.57 Aligned_cols=249 Identities=11% Similarity=-0.033 Sum_probs=143.7
Q ss_pred CCCcEEEecCCCCCCC--chhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCC
Q 039096 196 PLLEELALDVGKNVRD--SGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCK 273 (554)
Q Consensus 196 ~~L~~L~L~~c~~l~~--~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~ 273 (554)
.++++|+++++ .+++ ..+. .+ .++++|++|++++ ++. +.+.....+ ..+++|++|++++|.
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~--~l-~~l~~L~~L~L~~-----------~n~-l~~~~p~~l-~~l~~L~~L~Ls~n~ 112 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPS--SL-ANLPYLNFLYIGG-----------INN-LVGPIPPAI-AKLTQLHYLYITHTN 112 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCG--GG-GGCTTCSEEEEEE-----------ETT-EESCCCGGG-GGCTTCSEEEEEEEC
T ss_pred ceEEEEECCCC-CccCCcccCh--hH-hCCCCCCeeeCCC-----------CCc-ccccCChhH-hcCCCCCEEECcCCe
Confidence 57888999874 4766 4432 45 5666666544432 122 222112233 348889999998877
Q ss_pred CCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCC-C
Q 039096 274 NITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWK-S 352 (554)
Q Consensus 274 ~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 352 (554)
++...... ...+ ++|++|++++|...+. ++.....+++|++|+++.+.+....+..+ ..++ +
T Consensus 113 -l~~~~p~~-~~~l-~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-----------~~l~~~ 175 (313)
T 1ogq_A 113 -VSGAIPDF-LSQI-KTLVTLDFSYNALSGT---LPPSISSLPNLVGITFDGNRISGAIPDSY-----------GSFSKL 175 (313)
T ss_dssp -CEEECCGG-GGGC-TTCCEEECCSSEEESC---CCGGGGGCTTCCEEECCSSCCEEECCGGG-----------GCCCTT
T ss_pred -eCCcCCHH-HhCC-CCCCEEeCCCCccCCc---CChHHhcCCCCCeEECcCCcccCcCCHHH-----------hhhhhc
Confidence 43111111 2233 7888888888753311 11223357888888887776554455555 5666 8
Q ss_pred CceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCccccccccc
Q 039096 353 LKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQAAP 432 (554)
Q Consensus 353 L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~~~~ 432 (554)
|++|+++++. +++..+..+..++ |+.|+++ ++ .++ ......+..+++|+.|+++.+.+++.... .
T Consensus 176 L~~L~L~~N~---l~~~~~~~~~~l~-L~~L~Ls---~N----~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~ 240 (313)
T 1ogq_A 176 FTSMTISRNR---LTGKIPPTFANLN-LAFVDLS---RN----MLE---GDASVLFGSDKNTQKIHLAKNSLAFDLGK-V 240 (313)
T ss_dssp CCEEECCSSE---EEEECCGGGGGCC-CSEEECC---SS----EEE---ECCGGGCCTTSCCSEEECCSSEECCBGGG-C
T ss_pred CcEEECcCCe---eeccCChHHhCCc-ccEEECc---CC----ccc---CcCCHHHhcCCCCCEEECCCCceeeecCc-c
Confidence 8888887665 5545555566665 8888887 55 233 22334566688888888887666543221 1
Q ss_pred ccCCCCchhhhHhhcccccceecccccCCCCCcCCcchhhhhHHHHHHHhccccceeeeccchhh-HHHHhhhcCCCCCc
Q 039096 433 YKAADLSTWDRFVLNGIGNLILKELDYWPAKDPNASQRSLSRLAAALISNCITLRKVFVHCTARE-HFMSMLISPTPNPK 511 (554)
Q Consensus 433 ~~~~~L~~l~~~~l~~~~~l~L~~l~~~~~~~~~~~~~~~~lp~~~~l~~~~~L~~L~i~~~~~~-~~~~~~~~~~~~~~ 511 (554)
..++ .|+.++.... ...+.+|.. +..+++|+.|++++.... .++.. ..+++
T Consensus 241 ~~l~----------------~L~~L~Ls~N------~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~-- 292 (313)
T 1ogq_A 241 GLSK----------------NLNGLDLRNN------RIYGTLPQG--LTQLKFLHSLNVSFNNLCGEIPQG--GNLQR-- 292 (313)
T ss_dssp CCCT----------------TCCEEECCSS------CCEECCCGG--GGGCTTCCEEECCSSEEEEECCCS--TTGGG--
T ss_pred cccC----------------CCCEEECcCC------cccCcCChH--HhcCcCCCEEECcCCcccccCCCC--ccccc--
Confidence 1111 2333332221 222233555 778899999999965433 22222 22556
Q ss_pred ccccccccccC
Q 039096 512 KARDAQIKLDY 522 (554)
Q Consensus 512 ~L~~l~l~~~~ 522 (554)
|+.+++.++.
T Consensus 293 -L~~l~l~~N~ 302 (313)
T 1ogq_A 293 -FDVSAYANNK 302 (313)
T ss_dssp -SCGGGTCSSS
T ss_pred -cChHHhcCCC
Confidence 8888888875
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.23 E-value=5.3e-12 Score=124.52 Aligned_cols=46 Identities=20% Similarity=0.150 Sum_probs=33.7
Q ss_pred HHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeeccccc
Q 039096 186 EGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLH 235 (554)
Q Consensus 186 ~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~ 235 (554)
..+..+...+++|++|+++++ .+++.. ...+ ..+++|+.|+++++.
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n-~l~~~~--~~~~-~~l~~L~~L~Ls~n~ 69 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGN-PLSQIS--AADL-APFTKLELLNLSSNV 69 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTS-CCCCCC--HHHH-TTCTTCCEEECTTSC
T ss_pred hhHHHHhccCCCCCEEECcCC-ccCcCC--HHHh-hCCCcCCEEECCCCc
Confidence 344556667889999999985 587654 2356 789999988887753
No 75
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.22 E-value=1.5e-12 Score=127.69 Aligned_cols=201 Identities=13% Similarity=0.046 Sum_probs=132.1
Q ss_pred CCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHH--HHHHHhcCCCCcEEEecCCC
Q 039096 196 PLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMS--LVAIGRGCSKLVKFEVEGCK 273 (554)
Q Consensus 196 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~--l~~l~~~~~~L~~L~L~~c~ 273 (554)
++|++|+++++. +++... ..+ .++++|+.|++ ++|. ++..+ ...+. .+++|++|++++|.
T Consensus 28 ~~l~~L~L~~n~-l~~i~~--~~~-~~l~~L~~L~L------------~~n~-l~~~~~~~~~~~-~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 28 SSATRLELESNK-LQSLPH--GVF-DKLTQLTKLSL------------SSNG-LSFKGCCSQSDF-GTTSLKYLDLSFNG 89 (306)
T ss_dssp TTCCEEECCSSC-CCCCCT--TTT-TTCTTCSEEEC------------CSSC-CCEEEEEEHHHH-SCSCCCEEECCSCS
T ss_pred CCCCEEECCCCc-cCccCH--hHh-hccccCCEEEC------------CCCc-cCcccCcccccc-cccccCEEECCCCc
Confidence 689999998854 765432 123 56777775554 4444 33211 12222 38999999999987
Q ss_pred CCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCC
Q 039096 274 NITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSL 353 (554)
Q Consensus 274 ~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 353 (554)
++. +......+ ++|++|+++++.... .... .....+++|++|+++.+.+.......+ ..+++|
T Consensus 90 -i~~--l~~~~~~l-~~L~~L~l~~n~l~~-~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~-----------~~l~~L 152 (306)
T 2z66_A 90 -VIT--MSSNFLGL-EQLEHLDFQHSNLKQ-MSEF-SVFLSLRNLIYLDISHTHTRVAFNGIF-----------NGLSSL 152 (306)
T ss_dssp -EEE--EEEEEETC-TTCCEEECTTSEEES-STTT-TTTTTCTTCCEEECTTSCCEECSTTTT-----------TTCTTC
T ss_pred -ccc--ChhhcCCC-CCCCEEECCCCcccc-cccc-hhhhhccCCCEEECCCCcCCccchhhc-----------ccCcCC
Confidence 432 11111223 899999998875331 1111 123457899999998776555555555 788999
Q ss_pred ceEEeecccCCccCc-cccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCccccccccc
Q 039096 354 KELSFWIEVGELLTP-LPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQAAP 432 (554)
Q Consensus 354 ~~L~l~~c~~~~~t~-l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~~~~ 432 (554)
++|+++++. +++ ..+..+..+++|+.|+++ +| .++ ......+..+++|+.|+++.|.+++.....+
T Consensus 153 ~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~Ls---~n----~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 153 EVLKMAGNS---FQENFLPDIFTELRNLTFLDLS---QC----QLE---QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp CEEECTTCE---EGGGEECSCCTTCTTCCEEECT---TS----CCC---EECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred CEEECCCCc---cccccchhHHhhCcCCCEEECC---CC----CcC---CcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence 999998765 544 445557899999999998 66 344 3333467779999999999888887766555
Q ss_pred ccCCCCchhhhH
Q 039096 433 YKAADLSTWDRF 444 (554)
Q Consensus 433 ~~~~~L~~l~~~ 444 (554)
..+++|..++..
T Consensus 220 ~~l~~L~~L~L~ 231 (306)
T 2z66_A 220 KCLNSLQVLDYS 231 (306)
T ss_dssp TTCTTCCEEECT
T ss_pred cCcccCCEeECC
Confidence 566666655543
No 76
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.22 E-value=2e-12 Score=133.83 Aligned_cols=208 Identities=13% Similarity=0.042 Sum_probs=146.6
Q ss_pred CCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeeccccc------------CcccEEEecCCCCCCHHHHHHHHhcCCC
Q 039096 196 PLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLH------------SWLESLSIKNCGDLSDMSLVAIGRGCSK 263 (554)
Q Consensus 196 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~------------~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 263 (554)
++++.|+|+++ +++.... ..+ .++++|+.|+++++. .+|++|++++|. ++......+ ..+++
T Consensus 64 ~~l~~L~L~~n-~i~~~~~--~~~-~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKV--NSF-KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAF-VYLSK 137 (440)
T ss_dssp TTCSEEECCSC-CCCEECT--TTT-SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTS-CSCSS
T ss_pred CCCcEEEccCC-cCCeeCH--HHh-hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHh-hcccc
Confidence 68999999885 4765542 355 789999999998764 189999999986 554322223 34899
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccc
Q 039096 264 LVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTST 343 (554)
Q Consensus 264 L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 343 (554)
|++|++++|. ++..... ....+ ++|++|++++|..+..... .....+++|++|+++.+.+... ..+
T Consensus 138 L~~L~L~~N~-i~~~~~~-~~~~l-~~L~~L~l~~~~~l~~i~~--~~~~~l~~L~~L~L~~n~l~~~--~~~------- 203 (440)
T 3zyj_A 138 LKELWLRNNP-IESIPSY-AFNRI-PSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCNLREI--PNL------- 203 (440)
T ss_dssp CCEEECCSCC-CCEECTT-TTTTC-TTCCEEECCCCTTCCEECT--TTTTTCSSCCEEECTTSCCSSC--CCC-------
T ss_pred CceeeCCCCc-ccccCHH-HhhhC-cccCEeCCCCCCCcceeCc--chhhcccccCeecCCCCcCccc--ccc-------
Confidence 9999999987 4421111 12233 8999999998876643211 1234578999999977754422 234
Q ss_pred hhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCC
Q 039096 344 IFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGD 423 (554)
Q Consensus 344 ~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~ 423 (554)
..+++|++|+++++. ++.+....+..+++|+.|++. ++ .++ ......+..+++|+.|+|+.|.
T Consensus 204 ----~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~---~n----~l~---~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 204 ----TPLIKLDELDLSGNH---LSAIRPGSFQGLMHLQKLWMI---QS----QIQ---VIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp ----TTCSSCCEEECTTSC---CCEECTTTTTTCTTCCEEECT---TC----CCC---EECTTSSTTCTTCCEEECTTSC
T ss_pred ----CCCcccCEEECCCCc---cCccChhhhccCccCCEEECC---CC----cee---EEChhhhcCCCCCCEEECCCCC
Confidence 678999999998775 788877888999999999997 55 444 3334567779999999999888
Q ss_pred cccccccccccCCCCch
Q 039096 424 TDGHNQAAPYKAADLST 440 (554)
Q Consensus 424 ~~~~~~~~~~~~~~L~~ 440 (554)
++.........++.|..
T Consensus 267 l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 267 LTLLPHDLFTPLHHLER 283 (440)
T ss_dssp CCCCCTTTTSSCTTCCE
T ss_pred CCccChhHhccccCCCE
Confidence 88766555444444433
No 77
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.22 E-value=7.8e-12 Score=123.88 Aligned_cols=131 Identities=15% Similarity=0.177 Sum_probs=64.9
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHH-HH-----HHhhcCCCccEEEeeeeeccccch
Q 039096 260 GCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVAS-CK-----ALKPIRDRIQKLHIDCVWDGIRSS 333 (554)
Q Consensus 260 ~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~-l~-----~l~~~~~~L~~L~l~~~~~~~~~~ 333 (554)
.+++|++|++++|. ++ .+......+ ++|++|++++|...+.... +. .....+++|++|+++.+.+. ..+
T Consensus 125 ~l~~L~~L~Ls~n~-l~--~lp~~l~~l-~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp 199 (328)
T 4fcg_A 125 QFAGLETLTLARNP-LR--ALPASIASL-NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP 199 (328)
T ss_dssp GGTTCSEEEEESCC-CC--CCCGGGGGC-TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCC
T ss_pred ccCCCCEEECCCCc-cc--cCcHHHhcC-cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cch
Confidence 36777777777765 44 122122233 6677777777654422110 00 00112556666666555443 222
Q ss_pred hhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCC
Q 039096 334 EAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPR 413 (554)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~ 413 (554)
..+ ..+++|++|++++|. ++.++. .+..+++|+.|+++ +|.....+. ..+..+++
T Consensus 200 ~~l-----------~~l~~L~~L~L~~N~---l~~l~~-~l~~l~~L~~L~Ls---~n~~~~~~p-------~~~~~l~~ 254 (328)
T 4fcg_A 200 ASI-----------ANLQNLKSLKIRNSP---LSALGP-AIHHLPKLEELDLR---GCTALRNYP-------PIFGGRAP 254 (328)
T ss_dssp GGG-----------GGCTTCCEEEEESSC---CCCCCG-GGGGCTTCCEEECT---TCTTCCBCC-------CCTTCCCC
T ss_pred Hhh-----------cCCCCCCEEEccCCC---CCcCch-hhccCCCCCEEECc---CCcchhhhH-------HHhcCCCC
Confidence 233 556666666666554 444433 25566666666665 442221111 23444566
Q ss_pred ccceeee
Q 039096 414 LSKLVLD 420 (554)
Q Consensus 414 L~~L~l~ 420 (554)
|+.|+++
T Consensus 255 L~~L~L~ 261 (328)
T 4fcg_A 255 LKRLILK 261 (328)
T ss_dssp CCEEECT
T ss_pred CCEEECC
Confidence 6666666
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.19 E-value=3e-11 Score=118.74 Aligned_cols=181 Identities=15% Similarity=0.116 Sum_probs=106.3
Q ss_pred eEEEEecCCC---chhchhh--cCCCCcEEeccCCcccccccccCCCcc-CCCcccceeecccccccCc-ccHH-HHHhc
Q 039096 6 TSITLRGNAC---NLNIVPL--CFDAVTNLQLSNISPWGHSLLFSPSSS-SMDPRLLADLLQMSFLCFG-AEFV-PLLKH 77 (554)
Q Consensus 6 ~~L~l~~~~~---~l~~l~~--~~~~L~~L~Ls~~~~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~-~~l~-~~~~~ 77 (554)
+.+.+.++.- .+..++. .+++|++|+++++ .+..... ..+. ..+.+|++++++++..-.. ..+. ..+..
T Consensus 67 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~--~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 67 RRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDL-KITGTMP--PLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCC--CCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred eEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCC-Eeccchh--hhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4566666531 1222322 3577999999988 4544443 3331 3789999999985532111 1122 22457
Q ss_pred CCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHH-HHHHHHHhCCChHhhHHHHhccCCCCCEE
Q 039096 78 CKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQ-EIIEIIAARPNLNKWAVSIATNCPRLTLL 156 (554)
Q Consensus 78 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~-~l~~l~~~~~~L~~L~~~~~~~~~~L~~L 156 (554)
+++|++|++++| .+....+..+..+ ++|++|++++|. +... ++... .....+++|++|
T Consensus 144 ~~~L~~L~Ls~n-~l~~~~~~~~~~l----~~L~~L~Ls~N~----l~~~~~~~~~------------~~~~~l~~L~~L 202 (310)
T 4glp_A 144 KPGLKVLSIAQA-HSPAFSCEQVRAF----PALTSLDLSDNP----GLGERGLMAA------------LCPHKFPAIQNL 202 (310)
T ss_dssp CSCCCEEEEECC-SSCCCCTTSCCCC----TTCCEEECCSCT----TCHHHHHHTT------------SCTTSSCCCCSC
T ss_pred ccCCCEEEeeCC-CcchhhHHHhccC----CCCCEEECCCCC----CccchhhhHH------------HhhhcCCCCCEE
Confidence 999999999988 4454444444444 699999999886 3221 11100 011257899999
Q ss_pred EecccccccccCCCCCCCCCccccCCCC--HHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcC---CCCcEeec
Q 039096 157 HLAETSTLAAMRGDPDDDGFTAEDARIS--EEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKC---VNLKGLKL 231 (554)
Q Consensus 157 ~l~~c~~l~~~~~~~~~~g~~~~~~~i~--~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~---~~L~~L~l 231 (554)
++++| .++ ......+...+++|++|+++++ .+++..+. .+ ..+ ++|++|++
T Consensus 203 ~Ls~N--------------------~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~--~~-~~~~~~~~L~~L~L 258 (310)
T 4glp_A 203 ALRNT--------------------GMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNP--SA-PRCMWSSALNSLNL 258 (310)
T ss_dssp BCCSS--------------------CCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCS--CC-SSCCCCTTCCCEEC
T ss_pred ECCCC--------------------CCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchh--hH-HhccCcCcCCEEEC
Confidence 99875 333 2223334567899999999885 47665321 22 233 56666555
Q ss_pred ccc
Q 039096 232 GQL 234 (554)
Q Consensus 232 ~~~ 234 (554)
+++
T Consensus 259 s~N 261 (310)
T 4glp_A 259 SFA 261 (310)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 79
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.19 E-value=3.6e-11 Score=105.66 Aligned_cols=106 Identities=12% Similarity=0.196 Sum_probs=82.5
Q ss_pred CCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhc---CCCCcEEEecCC
Q 039096 196 PLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRG---CSKLVKFEVEGC 272 (554)
Q Consensus 196 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~---~~~L~~L~L~~c 272 (554)
..|++||+++|. ++|.+ +..+ ..|++|+ .|++++|..++|.++..++.. +++|++|+|++|
T Consensus 61 ~~L~~LDLs~~~-Itd~G--L~~L-~~~~~L~------------~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIG--FDHM-EGLQYVE------------KIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CCEEEEEEESCC-CCGGG--GGGG-TTCSCCC------------EEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred ceEeEEeCcCCC-ccHHH--HHHh-cCCCCCC------------EEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 479999999987 98888 5577 6777666 677788888999999998862 568999999999
Q ss_pred CCCCHHHHHHHHHHhcCCccEEEEeccCCCChhH-HHHHHhhcCCCcc
Q 039096 273 KNITVDGLRTLASLLRETLVVIKIYCCENLGAVA-SCKALKPIRDRIQ 319 (554)
Q Consensus 273 ~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~-~l~~l~~~~~~L~ 319 (554)
..|||.|+..+.. + ++|++|++++|+.+++.. ....+....|+++
T Consensus 125 ~~ITD~Gl~~L~~-~-~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 125 GNVTDKGIIALHH-F-RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TTCCHHHHHHGGG-C-TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CcCCHHHHHHHhc-C-CCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 9999999988864 5 899999999999885432 2334444455544
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.18 E-value=2.7e-11 Score=119.13 Aligned_cols=206 Identities=16% Similarity=0.139 Sum_probs=105.7
Q ss_pred cCCCCcEEeccCCcccccccccCCCc-cCCCcccceeecccccccCcccHHHHHhc-----CCCCcEEEecCCCCCCCCh
Q 039096 23 CFDAVTNLQLSNISPWGHSLLFSPSS-SSMDPRLLADLLQMSFLCFGAEFVPLLKH-----CKCLTSVDLSSFYHWTEDL 96 (554)
Q Consensus 23 ~~~~L~~L~Ls~~~~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~l~~~~~~-----~~~L~~L~L~~~~~~~~~~ 96 (554)
.+++|++|+++++ .+..... ..+ ...+++|++|+++++..-.. ...+.. +++|++|++++| .+....
T Consensus 93 ~l~~L~~L~L~~n-~l~~~~~--~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~ 165 (312)
T 1wwl_A 93 GISGLQELTLENL-EVTGTAP--PPLLEATGPDLNILNLRNVSWATR---DAWLAELQQWLKPGLKVLSIAQA-HSLNFS 165 (312)
T ss_dssp TTSCCCEEEEEEE-BCBSCCC--CCSSSCCSCCCSEEEEESCBCSSS---SSHHHHHHTTCCTTCCEEEEESC-SCCCCC
T ss_pred CcCCccEEEccCC-cccchhH--HHHHHhcCCCccEEEccCCCCcch---hHHHHHHHHhhcCCCcEEEeeCC-CCccch
Confidence 4778888888877 4444333 332 12677888888874431111 112222 278888888876 334443
Q ss_pred hHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHH-hccCCCCCEEEecccccccccCCCCCCCC
Q 039096 97 PPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSI-ATNCPRLTLLHLAETSTLAAMRGDPDDDG 175 (554)
Q Consensus 97 ~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~g 175 (554)
+..+..+ ++|++|++++|. +... +... ..+ ...+++|++|++++|
T Consensus 166 ~~~~~~l----~~L~~L~Ls~N~----l~~~-~~~~-----------~~~~~~~l~~L~~L~L~~N-------------- 211 (312)
T 1wwl_A 166 CEQVRVF----PALSTLDLSDNP----ELGE-RGLI-----------SALCPLKFPTLQVLALRNA-------------- 211 (312)
T ss_dssp TTTCCCC----SSCCEEECCSCT----TCHH-HHHH-----------HHSCTTSCTTCCEEECTTS--------------
T ss_pred HHHhccC----CCCCEEECCCCC----cCcc-hHHH-----------HHHHhccCCCCCEEECCCC--------------
Confidence 3444433 578888888775 2221 0000 011 135678888888764
Q ss_pred CccccCCCCH--HHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHH
Q 039096 176 FTAEDARISE--EGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMS 253 (554)
Q Consensus 176 ~~~~~~~i~~--~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~ 253 (554)
.++. .....+...+++|++|+++++ .+++..+. ..+ ..+++|+.|++ ++|. ++..
T Consensus 212 ------~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~-~~l~~L~~L~L------------s~N~-l~~i- 268 (312)
T 1wwl_A 212 ------GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGA-PSC-DWPSQLNSLNL------------SFTG-LKQV- 268 (312)
T ss_dssp ------CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCC-SCC-CCCTTCCEEEC------------TTSC-CSSC-
T ss_pred ------cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccch-hhh-hhcCCCCEEEC------------CCCc-cChh-
Confidence 2331 223344456788888888774 46553310 111 33455555554 4443 3310
Q ss_pred HHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccC
Q 039096 254 LVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCE 300 (554)
Q Consensus 254 l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 300 (554)
...+ .++|+.|++++|. +++. .. ...+ ++|++|++++++
T Consensus 269 p~~~---~~~L~~L~Ls~N~-l~~~--p~-~~~l-~~L~~L~L~~N~ 307 (312)
T 1wwl_A 269 PKGL---PAKLSVLDLSYNR-LDRN--PS-PDEL-PQVGNLSLKGNP 307 (312)
T ss_dssp CSSC---CSEEEEEECCSSC-CCSC--CC-TTTS-CEEEEEECTTCT
T ss_pred hhhc---cCCceEEECCCCC-CCCC--hh-HhhC-CCCCEEeccCCC
Confidence 0000 1466666766665 4432 11 2223 566666666654
No 81
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.18 E-value=2.2e-11 Score=107.05 Aligned_cols=105 Identities=16% Similarity=0.276 Sum_probs=86.0
Q ss_pred CCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhc---CCCCc
Q 039096 151 PRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSK---CVNLK 227 (554)
Q Consensus 151 ~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~---~~~L~ 227 (554)
.+|++|++++| . |++.++..+ .+|++|++|+|++|..++|.+ +..++.. ++
T Consensus 61 ~~L~~LDLs~~-------------------~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~g--L~~L~~~~~~~~--- 114 (176)
T 3e4g_A 61 YKIQAIDATDS-------------------C-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGC--LERLSQLENLQK--- 114 (176)
T ss_dssp CCEEEEEEESC-------------------C-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHH--HHHHHTCHHHHH---
T ss_pred ceEeEEeCcCC-------------------C-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHH--HHHHHhcccccC---
Confidence 47999999986 3 788888877 589999999999999999988 6688541 33
Q ss_pred EeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHH--HHHHHHhcCCcc
Q 039096 228 GLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGL--RTLASLLRETLV 292 (554)
Q Consensus 228 ~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~--~~l~~~~~~~L~ 292 (554)
+|++|++++|..|+|.++..+.. |++|++|++++|+.+++.|+ ..+...+ |+++
T Consensus 115 ---------~L~~L~Ls~C~~ITD~Gl~~L~~-~~~L~~L~L~~c~~Itd~gl~~~~L~~~l-P~l~ 170 (176)
T 3e4g_A 115 ---------SMLEMEIISCGNVTDKGIIALHH-FRNLKYLFLSDLPGVKEKEKIVQAFKTSL-PSLE 170 (176)
T ss_dssp ---------HCCEEEEESCTTCCHHHHHHGGG-CTTCCEEEEESCTTCCCHHHHHHHHHHHC-TTCE
T ss_pred ---------CCCEEEcCCCCcCCHHHHHHHhc-CCCCCEEECCCCCCCCchHHHHHHHHHHC-CCcE
Confidence 35588889998999999999875 99999999999999999874 4455566 6664
No 82
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.16 E-value=2.6e-10 Score=114.66 Aligned_cols=177 Identities=15% Similarity=0.181 Sum_probs=101.9
Q ss_pred CCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHH
Q 039096 108 AILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEG 187 (554)
Q Consensus 108 ~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~ 187 (554)
++|++|++++|. +++.....+. ..+...+++|++|++++ +.+++.+
T Consensus 72 ~~L~~L~Ls~n~----l~~~~~~~l~----------~~L~~~~~~L~~L~Ls~--------------------n~l~~~~ 117 (372)
T 3un9_A 72 SSLRQLNLAGVR----MTPVKCTVVA----------AVLGSGRHALDEVNLAS--------------------CQLDPAG 117 (372)
T ss_dssp TTCCEEECTTSC----CCHHHHHHHH----------HHHSSCSSCEEEEECTT--------------------CCCCHHH
T ss_pred hhCCEEEecCCC----CCHHHHHHHH----------HHHhhCCCCceEEEecC--------------------CCCCHHH
Confidence 467777777766 6665555442 22222346777777765 3466666
Q ss_pred HHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHh----cCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHH---hc
Q 039096 188 LIQLFSGLPLLEELALDVGKNVRDSGSASEALKS----KCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIG---RG 260 (554)
Q Consensus 188 l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~----~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~---~~ 260 (554)
+..+...+++|++|+|++| .+++.+ ...++. .++ +|++|++++|. +++.+...++ ..
T Consensus 118 ~~~l~~~L~~L~~L~Ls~n-~l~~~~--~~~L~~~L~~~~~------------~L~~L~Ls~n~-l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 118 LRTLLPVFLRARKLGLQLN-SLGPEA--CKDLRDLLLHDQC------------QITTLRLSNNP-LTAAGVAVLMEGLAG 181 (372)
T ss_dssp HHHTHHHHHTEEEEECCSS-CCCHHH--HHHHHHHHHSTTC------------CCCEEECCSSC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHhhcCCC-CCCHHH--HHHHHHHHHhcCC------------ccceeeCCCCC-CChHHHHHHHHHHhc
Confidence 6666666667777777775 466555 334432 223 34456666665 6666655543 33
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHHHhc--CCccEEEEeccCCCChhH--HHHHHhhcCCCccEEEeeeeeccccchhhh
Q 039096 261 CSKLVKFEVEGCKNITVDGLRTLASLLR--ETLVVIKIYCCENLGAVA--SCKALKPIRDRIQKLHIDCVWDGIRSSEAK 336 (554)
Q Consensus 261 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~--~~L~~L~l~~c~~~~~~~--~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 336 (554)
+++|++|+|++|. +++.|+..+...+. ++|++|++++|... ... .+......++.|++|+++++.+++.+...+
T Consensus 182 ~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~-~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 182 NTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAG-DTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp CSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCC-HHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCC-HHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 6777777777777 77777666654431 46777777776422 221 122222345666666666665555555444
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.14 E-value=1.1e-11 Score=129.64 Aligned_cols=158 Identities=13% Similarity=0.050 Sum_probs=77.7
Q ss_pred CCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccC----------cccEEEecCCCCCCHHHHHHHHhcCCC
Q 039096 194 GLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHS----------WLESLSIKNCGDLSDMSLVAIGRGCSK 263 (554)
Q Consensus 194 ~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~----------~L~~L~l~~~~~l~~~~l~~l~~~~~~ 263 (554)
.+++|++|+|+++ .+++..+ ..+ ..+++|+.|+++++.- +|++|++++|. +++.. ..++
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~--~~~-~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~------~~~~ 100 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISA--ADL-APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY-VQELL------VGPS 100 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCG--GGG-TTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSE-EEEEE------ECTT
T ss_pred cCCCccEEEeeCC-cCCCCCH--HHH-hCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCc-CCCCC------CCCC
Confidence 4459999999985 5776543 255 7889999888876541 55555555554 32210 1345
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccc
Q 039096 264 LVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTST 343 (554)
Q Consensus 264 L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 343 (554)
|+.|++++|. +++... ..+ ++|+.|++++|.... ..+ .....+++|++|+++.+.+....+..+
T Consensus 101 L~~L~L~~N~-l~~~~~----~~l-~~L~~L~L~~N~l~~-~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~l------- 164 (487)
T 3oja_A 101 IETLHAANNN-ISRVSC----SRG-QGKKNIYLANNKITM-LRD--LDEGCRSRVQYLDLKLNEIDTVNFAEL------- 164 (487)
T ss_dssp CCEEECCSSC-CCCEEE----CCC-SSCEEEECCSSCCCS-GGG--BCGGGGSSEEEEECTTSCCCEEEGGGG-------
T ss_pred cCEEECcCCc-CCCCCc----ccc-CCCCEEECCCCCCCC-CCc--hhhcCCCCCCEEECCCCCCCCcChHHH-------
Confidence 5555555554 332111 012 455555555544221 100 011224455555554444333333332
Q ss_pred hhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEe
Q 039096 344 IFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIK 386 (554)
Q Consensus 344 ~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~ 386 (554)
...+++|++|++++|. +++++ ....+++|+.|+++
T Consensus 165 ---~~~l~~L~~L~Ls~N~---l~~~~--~~~~l~~L~~L~Ls 199 (487)
T 3oja_A 165 ---AASSDTLEHLNLQYNF---IYDVK--GQVVFAKLKTLDLS 199 (487)
T ss_dssp ---GGGTTTCCEEECTTSC---CCEEE--CCCCCTTCCEEECC
T ss_pred ---hhhCCcccEEecCCCc---ccccc--ccccCCCCCEEECC
Confidence 1245555555555443 33331 12235555555554
No 84
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=1.5e-10 Score=116.29 Aligned_cols=167 Identities=19% Similarity=0.180 Sum_probs=105.7
Q ss_pred CCCCcEEEecCCCCCCCChhHHHhhc-CcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEE
Q 039096 78 CKCLTSVDLSSFYHWTEDLPPVLKAY-PDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLL 156 (554)
Q Consensus 78 ~~~L~~L~L~~~~~~~~~~~~~l~~l-~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L 156 (554)
.++|++|+|++|. ++......+... ...+.+|++|+|++|. +++.++..+.. .+++|++|
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~----l~~~~~~~l~~--------------~L~~L~~L 131 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ----LDPAGLRTLLP--------------VFLRARKL 131 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC----CCHHHHHHTHH--------------HHHTEEEE
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC----CCHHHHHHHHH--------------HHHhccHh
Confidence 5678899998874 444322333332 2223689999999886 77777655532 23467888
Q ss_pred EecccccccccCCCCCCCCCccccCCCCHHHHHHHHh----CCCCCcEEEecCCCCCCCchhhHHHHH---hcCCCCcEe
Q 039096 157 HLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFS----GLPLLEELALDVGKNVRDSGSASEALK---SKCVNLKGL 229 (554)
Q Consensus 157 ~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~----~~~~L~~L~L~~c~~l~~~~~~l~~l~---~~~~~L~~L 229 (554)
++++ +.+++.+...+.. .+++|++|+|++|. +++.+ ...++ ..+++|+
T Consensus 132 ~Ls~--------------------n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~--~~~l~~~L~~~~~L~-- 186 (372)
T 3un9_A 132 GLQL--------------------NSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAG--VAVLMEGLAGNTSVT-- 186 (372)
T ss_dssp ECCS--------------------SCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHH--HHHHHHHHHTCSSCC--
T ss_pred hcCC--------------------CCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHH--HHHHHHHHhcCCCcC--
Confidence 8876 3566666655542 45788888888864 76655 33443 3344444
Q ss_pred ecccccCcccEEEecCCCCCCHHHHHHHHh---cCCCCcEEEecCCCCCCHHHHHHHHHHh--cCCccEEEEeccC
Q 039096 230 KLGQLHSWLESLSIKNCGDLSDMSLVAIGR---GCSKLVKFEVEGCKNITVDGLRTLASLL--RETLVVIKIYCCE 300 (554)
Q Consensus 230 ~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~---~~~~L~~L~L~~c~~i~~~~~~~l~~~~--~~~L~~L~l~~c~ 300 (554)
+|++++|. +++.+...++. .+++|++|+|++|. +++.+...+...+ .++|++|++++|.
T Consensus 187 ----------~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 187 ----------HLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp ----------EEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred ----------EEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 66667776 77766555443 35678888888877 7877766655432 1678888887775
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.11 E-value=9.8e-11 Score=114.86 Aligned_cols=184 Identities=17% Similarity=0.122 Sum_probs=109.7
Q ss_pred CCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccC----------cccEEEecCCCCCCHHHHHHHHhcCCCC
Q 039096 195 LPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHS----------WLESLSIKNCGDLSDMSLVAIGRGCSKL 264 (554)
Q Consensus 195 ~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~----------~L~~L~l~~~~~l~~~~l~~l~~~~~~L 264 (554)
+++|++|++++|. +++. ..+ ..+++|+.|+++++.- +|++|++++|. +++. ..+ ..+++|
T Consensus 40 l~~L~~L~l~~~~-i~~l----~~~-~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~-l~~~--~~~-~~l~~L 109 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTTI----EGV-QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP-LKNV--SAI-AGLQSI 109 (308)
T ss_dssp HHTCCEEECTTSC-CCCC----TTG-GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCC-CSCC--GGG-TTCTTC
T ss_pred cCCcCEEEeeCCC-ccCc----hhh-hccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCc-CCCc--hhh-cCCCCC
Confidence 4678888887753 5442 234 5677777777765431 66677777765 4442 222 236778
Q ss_pred cEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccch
Q 039096 265 VKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTI 344 (554)
Q Consensus 265 ~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 344 (554)
++|++++|. +++. .. ...+ ++|++|++++|... .... ...+++|++|+++.+.+..... +
T Consensus 110 ~~L~l~~n~-l~~~--~~-l~~l-~~L~~L~l~~n~l~-~~~~----l~~l~~L~~L~l~~n~l~~~~~--l-------- 169 (308)
T 1h6u_A 110 KTLDLTSTQ-ITDV--TP-LAGL-SNLQVLYLDLNQIT-NISP----LAGLTNLQYLSIGNAQVSDLTP--L-------- 169 (308)
T ss_dssp CEEECTTSC-CCCC--GG-GTTC-TTCCEEECCSSCCC-CCGG----GGGCTTCCEEECCSSCCCCCGG--G--------
T ss_pred CEEECCCCC-CCCc--hh-hcCC-CCCCEEECCCCccC-cCcc----ccCCCCccEEEccCCcCCCChh--h--------
Confidence 888887776 4432 11 2233 67778887777543 2222 2346778888876665443222 4
Q ss_pred hhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCc
Q 039096 345 FSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDT 424 (554)
Q Consensus 345 ~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~ 424 (554)
..+++|+.|++++|. ++++.. +..+++|+.|+++ +| .++ +. ..+..+++|+.|+++.|.+
T Consensus 170 ---~~l~~L~~L~l~~n~---l~~~~~--l~~l~~L~~L~L~---~N----~l~---~~--~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 170 ---ANLSKLTTLKADDNK---ISDISP--LASLPNLIEVHLK---NN----QIS---DV--SPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp ---TTCTTCCEEECCSSC---CCCCGG--GGGCTTCCEEECT---TS----CCC---BC--GGGTTCTTCCEEEEEEEEE
T ss_pred ---cCCCCCCEEECCCCc---cCcChh--hcCCCCCCEEEcc---CC----ccC---cc--ccccCCCCCCEEEccCCee
Confidence 567778888876655 555443 5667778888876 55 233 11 1356677788888876666
Q ss_pred cccc
Q 039096 425 DGHN 428 (554)
Q Consensus 425 ~~~~ 428 (554)
++.+
T Consensus 230 ~~~~ 233 (308)
T 1h6u_A 230 TNQP 233 (308)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 5543
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.11 E-value=1.4e-11 Score=118.55 Aligned_cols=193 Identities=14% Similarity=0.162 Sum_probs=114.6
Q ss_pred CCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCC
Q 039096 194 GLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCK 273 (554)
Q Consensus 194 ~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~ 273 (554)
.+++|++|+++++. +++. ..+ ..+++|+.|++++ |. +++. ..+ ..+++|++|++++|.
T Consensus 39 ~l~~L~~L~l~~~~-i~~~----~~l-~~l~~L~~L~l~~------------n~-l~~~--~~l-~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKSV----QGI-QYLPNVRYLALGG------------NK-LHDI--SAL-KELTNLTYLILTGNQ 96 (272)
T ss_dssp HHTTCCEEECTTSC-CCCC----TTG-GGCTTCCEEECTT------------SC-CCCC--GGG-TTCTTCCEEECTTSC
T ss_pred cccceeeeeeCCCC-cccc----ccc-ccCCCCcEEECCC------------CC-CCCc--hhh-cCCCCCCEEECCCCc
Confidence 35789999998754 6543 244 5677777655544 43 3321 122 237788888888776
Q ss_pred CCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCC
Q 039096 274 NITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSL 353 (554)
Q Consensus 274 ~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 353 (554)
+++... .....+ ++|++|++++|...... ......+++|++|+++.+.+.......+ ..+++|
T Consensus 97 -l~~~~~-~~~~~l-~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------~~l~~L 159 (272)
T 3rfs_A 97 -LQSLPN-GVFDKL-TNLKELVLVENQLQSLP---DGVFDKLTNLTYLNLAHNQLQSLPKGVF-----------DKLTNL 159 (272)
T ss_dssp -CCCCCT-TTTTTC-TTCCEEECTTSCCCCCC---TTTTTTCTTCCEEECCSSCCCCCCTTTT-----------TTCTTC
T ss_pred -cCccCh-hHhcCC-cCCCEEECCCCcCCccC---HHHhccCCCCCEEECCCCccCccCHHHh-----------ccCccC
Confidence 442111 111223 67888888777533211 1112346778888887766554444444 677888
Q ss_pred ceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCcccccccccc
Q 039096 354 KELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQAAPY 433 (554)
Q Consensus 354 ~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~~~~~ 433 (554)
++|++++|. ++++....+..+++|+.|+++ +|. ++ ......+..+++|+.|+++.|.+. +
T Consensus 160 ~~L~l~~n~---l~~~~~~~~~~l~~L~~L~L~---~N~----l~---~~~~~~~~~l~~L~~L~l~~N~~~-------~ 219 (272)
T 3rfs_A 160 TELDLSYNQ---LQSLPEGVFDKLTQLKDLRLY---QNQ----LK---SVPDGVFDRLTSLQYIWLHDNPWD-------C 219 (272)
T ss_dssp CEEECCSSC---CCCCCTTTTTTCTTCCEEECC---SSC----CS---CCCTTTTTTCTTCCEEECCSSCBC-------C
T ss_pred CEEECCCCC---cCccCHHHhcCCccCCEEECC---CCc----CC---ccCHHHHhCCcCCCEEEccCCCcc-------c
Confidence 888887665 666666666778888888887 553 22 111234566788888888855443 2
Q ss_pred cCCCCchhhhHh
Q 039096 434 KAADLSTWDRFV 445 (554)
Q Consensus 434 ~~~~L~~l~~~~ 445 (554)
.++.+..++.+.
T Consensus 220 ~~~~l~~l~~~~ 231 (272)
T 3rfs_A 220 TCPGIRYLSEWI 231 (272)
T ss_dssp CTTTTHHHHHHH
T ss_pred cCcHHHHHHHHH
Confidence 345555555443
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.08 E-value=4.7e-11 Score=115.18 Aligned_cols=215 Identities=19% Similarity=0.079 Sum_probs=117.4
Q ss_pred chhchhhcCC-CCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHH-HHHhcCCCCcEEEecCCCCCC
Q 039096 16 NLNIVPLCFD-AVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFV-PLLKHCKCLTSVDLSSFYHWT 93 (554)
Q Consensus 16 ~l~~l~~~~~-~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~ 93 (554)
.+..+|..++ +|+.|+++++ .+..... ..+. .+++|++++++++. -..+. ..+..+++|++|++++|. +.
T Consensus 18 ~l~~ip~~l~~~l~~L~ls~n-~l~~~~~--~~~~-~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~L~~n~-l~ 89 (276)
T 2z62_A 18 NFYKIPDNLPFSTKNLDLSFN-PLRHLGS--YSFF-SFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILTGNP-IQ 89 (276)
T ss_dssp CCSSCCSSSCTTCCEEECTTC-CCCEECT--TTTT-TCTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECTTCC-CC
T ss_pred CccccCCCCCCCccEEECCCC-cccccCH--hHhc-cccCCcEEECCCCc---CCccCHHHccCCcCCCEEECCCCc-cC
Confidence 4667887654 6999999988 4433221 2444 78889999998442 11111 235678899999998873 33
Q ss_pred CChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCC
Q 039096 94 EDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDD 173 (554)
Q Consensus 94 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 173 (554)
...+..+..+ ++|++|++++|.... +. ......+++|++|++++|
T Consensus 90 ~~~~~~~~~l----~~L~~L~l~~n~l~~-~~------------------~~~~~~l~~L~~L~l~~n------------ 134 (276)
T 2z62_A 90 SLALGAFSGL----SSLQKLVAVETNLAS-LE------------------NFPIGHLKTLKELNVAHN------------ 134 (276)
T ss_dssp EECTTTTTTC----TTCCEEECTTSCCCC-ST------------------TCCCTTCTTCCEEECCSS------------
T ss_pred ccChhhhcCC----ccccEEECCCCCccc-cC------------------chhcccCCCCCEEECcCC------------
Confidence 3333334333 689999998876221 10 001236788999999775
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchh-hHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHH
Q 039096 174 DGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGS-ASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDM 252 (554)
Q Consensus 174 ~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~-~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~ 252 (554)
.++...+......+++|++|+++++. +++... ++..+ ..++.|. + .|++++|. ++..
T Consensus 135 --------~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~l~---l--------~L~ls~n~-l~~~ 192 (276)
T 2z62_A 135 --------LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVL-HQMPLLN---L--------SLDLSLNP-MNFI 192 (276)
T ss_dssp --------CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHH-HTCTTCC---E--------EEECCSSC-CCEE
T ss_pred --------ccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhh-hhccccc---e--------eeecCCCc-cccc
Confidence 12111111223567899999998854 655432 23333 3333333 1 34444443 2221
Q ss_pred HHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccC
Q 039096 253 SLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCE 300 (554)
Q Consensus 253 ~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~ 300 (554)
....+ ...+|+.|++++|. ++.... .....+ ++|++|++++++
T Consensus 193 ~~~~~--~~~~L~~L~L~~n~-l~~~~~-~~~~~l-~~L~~L~l~~N~ 235 (276)
T 2z62_A 193 QPGAF--KEIRLKELALDTNQ-LKSVPD-GIFDRL-TSLQKIWLHTNP 235 (276)
T ss_dssp CTTSS--CSCCEEEEECCSSC-CSCCCT-TTTTTC-CSCCEEECCSSC
T ss_pred Ccccc--CCCcccEEECCCCc-eeecCH-hHhccc-ccccEEEccCCc
Confidence 11110 12367777777665 442111 111223 677777776554
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.05 E-value=5.1e-10 Score=109.73 Aligned_cols=177 Identities=16% Similarity=0.120 Sum_probs=129.9
Q ss_pred cCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcE
Q 039096 149 NCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKG 228 (554)
Q Consensus 149 ~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~ 228 (554)
.+++|++|++++|. ++. +.. ...+++|++|++++| .+++.. .+ ..+++|+.
T Consensus 39 ~l~~L~~L~l~~~~--------------------i~~--l~~-~~~l~~L~~L~L~~n-~i~~~~----~~-~~l~~L~~ 89 (308)
T 1h6u_A 39 DLDGITTLSAFGTG--------------------VTT--IEG-VQYLNNLIGLELKDN-QITDLA----PL-KNLTKITE 89 (308)
T ss_dssp HHHTCCEEECTTSC--------------------CCC--CTT-GGGCTTCCEEECCSS-CCCCCG----GG-TTCCSCCE
T ss_pred HcCCcCEEEeeCCC--------------------ccC--chh-hhccCCCCEEEccCC-cCCCCh----hH-ccCCCCCE
Confidence 35789999998751 111 111 346899999999886 476654 24 78999999
Q ss_pred eecccccC----------cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEec
Q 039096 229 LKLGQLHS----------WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYC 298 (554)
Q Consensus 229 L~l~~~~~----------~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~ 298 (554)
|+++++.- +|++|++++|. +++. ..+ ..+++|++|++++|. +++.. . ...+ ++|++|++++
T Consensus 90 L~L~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~--~~l-~~l~~L~~L~l~~n~-l~~~~--~-l~~l-~~L~~L~l~~ 160 (308)
T 1h6u_A 90 LELSGNPLKNVSAIAGLQSIKTLDLTSTQ-ITDV--TPL-AGLSNLQVLYLDLNQ-ITNIS--P-LAGL-TNLQYLSIGN 160 (308)
T ss_dssp EECCSCCCSCCGGGTTCTTCCEEECTTSC-CCCC--GGG-TTCTTCCEEECCSSC-CCCCG--G-GGGC-TTCCEEECCS
T ss_pred EEccCCcCCCchhhcCCCCCCEEECCCCC-CCCc--hhh-cCCCCCCEEECCCCc-cCcCc--c-ccCC-CCccEEEccC
Confidence 99987641 89999999998 6653 233 458999999999998 55322 1 2344 8999999999
Q ss_pred cCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCC
Q 039096 299 CENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECP 378 (554)
Q Consensus 299 c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~ 378 (554)
|... .... ...+++|++|+++.+.+.... .+ ..+++|++|++++|. ++++. .+..++
T Consensus 161 n~l~-~~~~----l~~l~~L~~L~l~~n~l~~~~--~l-----------~~l~~L~~L~L~~N~---l~~~~--~l~~l~ 217 (308)
T 1h6u_A 161 AQVS-DLTP----LANLSKLTTLKADDNKISDIS--PL-----------ASLPNLIEVHLKNNQ---ISDVS--PLANTS 217 (308)
T ss_dssp SCCC-CCGG----GTTCTTCCEEECCSSCCCCCG--GG-----------GGCTTCCEEECTTSC---CCBCG--GGTTCT
T ss_pred CcCC-CChh----hcCCCCCCEEECCCCccCcCh--hh-----------cCCCCCCEEEccCCc---cCccc--cccCCC
Confidence 8644 3222 345899999999877654433 24 689999999998776 66665 378899
Q ss_pred CCCEEEEe
Q 039096 379 ILENIRIK 386 (554)
Q Consensus 379 ~L~~L~l~ 386 (554)
+|+.|+++
T Consensus 218 ~L~~L~l~ 225 (308)
T 1h6u_A 218 NLFIVTLT 225 (308)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEcc
Confidence 99999998
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.98 E-value=2.3e-10 Score=110.02 Aligned_cols=173 Identities=12% Similarity=0.100 Sum_probs=93.9
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCC
Q 039096 261 CSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGN 340 (554)
Q Consensus 261 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 340 (554)
+++|+.|++++|. +++. ..+ ..+ ++|++|++++|.... .. ......+++|++|+++.+.+.......+
T Consensus 62 l~~L~~L~l~~n~-l~~~--~~l-~~l-~~L~~L~L~~n~l~~-~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~---- 129 (272)
T 3rfs_A 62 LPNVRYLALGGNK-LHDI--SAL-KEL-TNLTYLILTGNQLQS-LP--NGVFDKLTNLKELVLVENQLQSLPDGVF---- 129 (272)
T ss_dssp CTTCCEEECTTSC-CCCC--GGG-TTC-TTCCEEECTTSCCCC-CC--TTTTTTCTTCCEEECTTSCCCCCCTTTT----
T ss_pred CCCCcEEECCCCC-CCCc--hhh-cCC-CCCCEEECCCCccCc-cC--hhHhcCCcCCCEEECCCCcCCccCHHHh----
Confidence 7777777777776 4421 111 223 567777776664321 10 0112335666666665554443333333
Q ss_pred ccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeee
Q 039096 341 TSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLD 420 (554)
Q Consensus 341 ~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~ 420 (554)
..+++|++|++++|. ++.++...+..+++|+.|+++ +|+ ++ ......+..+++|+.|+++
T Consensus 130 -------~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~l~---~n~----l~---~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 130 -------DKLTNLTYLNLAHNQ---LQSLPKGVFDKLTNLTELDLS---YNQ----LQ---SLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp -------TTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECC---SSC----CC---CCCTTTTTTCTTCCEEECC
T ss_pred -------ccCCCCCEEECCCCc---cCccCHHHhccCccCCEEECC---CCC----cC---ccCHHHhcCCccCCEEECC
Confidence 556666666666554 555555545666666666666 442 22 1111234446666666666
Q ss_pred cCCcccccccccccCCCCchhhhHhhcccccceecccccCCCCCcCCcchhhhhHHHHHHHhccccceeeeccchhhHHH
Q 039096 421 FGDTDGHNQAAPYKAADLSTWDRFVLNGIGNLILKELDYWPAKDPNASQRSLSRLAAALISNCITLRKVFVHCTAREHFM 500 (554)
Q Consensus 421 c~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~l~L~~l~~~~~~~~~~~~~~~~lp~~~~l~~~~~L~~L~i~~~~~~~~~ 500 (554)
.|.+++.. +.. +..+++|+.|++++....
T Consensus 190 ~N~l~~~~----------------------------------------------~~~--~~~l~~L~~L~l~~N~~~--- 218 (272)
T 3rfs_A 190 QNQLKSVP----------------------------------------------DGV--FDRLTSLQYIWLHDNPWD--- 218 (272)
T ss_dssp SSCCSCCC----------------------------------------------TTT--TTTCTTCCEEECCSSCBC---
T ss_pred CCcCCccC----------------------------------------------HHH--HhCCcCCCEEEccCCCcc---
Confidence 44443211 111 457888999999975422
Q ss_pred HhhhcCCCCCcccccccccccCC
Q 039096 501 SMLISPTPNPKKARDAQIKLDYY 523 (554)
Q Consensus 501 ~~~~~~~~~~~~L~~l~l~~~~~ 523 (554)
..||+ |+.++++.+.+
T Consensus 219 ----~~~~~---l~~l~~~~n~~ 234 (272)
T 3rfs_A 219 ----CTCPG---IRYLSEWINKH 234 (272)
T ss_dssp ----CCTTT---THHHHHHHHHT
T ss_pred ----ccCcH---HHHHHHHHHhC
Confidence 23777 88887776543
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.98 E-value=1e-10 Score=112.73 Aligned_cols=194 Identities=14% Similarity=0.101 Sum_probs=101.0
Q ss_pred CCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccC------------cccEEEecCCCCCCHHHHHHHHhcCCC
Q 039096 196 PLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHS------------WLESLSIKNCGDLSDMSLVAIGRGCSK 263 (554)
Q Consensus 196 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~------------~L~~L~l~~~~~l~~~~l~~l~~~~~~ 263 (554)
++|++|+++++ .+++... ..+ .++++|++|+++++.- +|++|++++|. ++......+. .+++
T Consensus 28 ~~l~~L~ls~n-~l~~~~~--~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGS--YSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFS-GLSS 101 (276)
T ss_dssp TTCCEEECTTC-CCCEECT--TTT-TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTT-TCTT
T ss_pred CCccEEECCCC-cccccCH--hHh-ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhc-CCcc
Confidence 46888999875 4765442 144 5678888887776531 56666666665 4432222222 3667
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccc
Q 039096 264 LVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTST 343 (554)
Q Consensus 264 L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 343 (554)
|++|++++|. ++...... ...+ ++|++|+++++..... .+......+++|++|+++.+.+.......+
T Consensus 102 L~~L~l~~n~-l~~~~~~~-~~~l-~~L~~L~l~~n~l~~~--~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------- 169 (276)
T 2z62_A 102 LQKLVAVETN-LASLENFP-IGHL-KTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQSIYCTDL------- 169 (276)
T ss_dssp CCEEECTTSC-CCCSTTCC-CTTC-TTCCEEECCSSCCCCC--CCCGGGGGCTTCCEEECCSSCCCEECGGGG-------
T ss_pred ccEEECCCCC-ccccCchh-cccC-CCCCEEECcCCcccee--cCchhhccCCCCCEEECCCCCCCcCCHHHh-------
Confidence 7777777665 33211000 1122 5677777766643210 111122345667777776655444333333
Q ss_pred hhhhhcCCCCc----eEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceee
Q 039096 344 IFSKTRWKSLK----ELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVL 419 (554)
Q Consensus 344 ~~~~~~~~~L~----~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l 419 (554)
..+++|+ +|+++++. ++.+....+ ...+|+.|+++ ++. ++ ......+..+++|+.|++
T Consensus 170 ----~~l~~L~~l~l~L~ls~n~---l~~~~~~~~-~~~~L~~L~L~---~n~----l~---~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 170 ----RVLHQMPLLNLSLDLSLNP---MNFIQPGAF-KEIRLKELALD---TNQ----LK---SVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp ----HHHHTCTTCCEEEECCSSC---CCEECTTSS-CSCCEEEEECC---SSC----CS---CCCTTTTTTCCSCCEEEC
T ss_pred ----hhhhhccccceeeecCCCc---ccccCcccc-CCCcccEEECC---CCc----ee---ecCHhHhcccccccEEEc
Confidence 3333444 56665444 444444323 22367777776 442 22 111123445677777777
Q ss_pred ecCCcc
Q 039096 420 DFGDTD 425 (554)
Q Consensus 420 ~c~~~~ 425 (554)
+.|.++
T Consensus 232 ~~N~~~ 237 (276)
T 2z62_A 232 HTNPWD 237 (276)
T ss_dssp CSSCBC
T ss_pred cCCccc
Confidence 755554
No 91
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.93 E-value=2.9e-10 Score=109.20 Aligned_cols=156 Identities=16% Similarity=0.118 Sum_probs=75.4
Q ss_pred ccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCC
Q 039096 238 LESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDR 317 (554)
Q Consensus 238 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~ 317 (554)
++.|++++|. ++......+ ..+++|++|++++|. ++... ......+ ++|++|+++++....... .....+++
T Consensus 39 l~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~i~-~~~~~~l-~~L~~L~l~~n~l~~~~~---~~~~~l~~ 110 (270)
T 2o6q_A 39 TKKLDLQSNK-LSSLPSKAF-HRLTKLRLLYLNDNK-LQTLP-AGIFKEL-KNLETLWVTDNKLQALPI---GVFDQLVN 110 (270)
T ss_dssp CSEEECCSSC-CSCCCTTSS-SSCTTCCEEECCSSC-CSCCC-TTTTSSC-TTCCEEECCSSCCCCCCT---TTTTTCSS
T ss_pred CCEEECcCCC-CCeeCHHHh-cCCCCCCEEECCCCc-cCeeC-hhhhcCC-CCCCEEECCCCcCCcCCH---hHcccccC
Confidence 3455555554 332211122 236777888877765 33111 0011122 566677666654321110 11233566
Q ss_pred ccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCC
Q 039096 318 IQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLL 397 (554)
Q Consensus 318 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l 397 (554)
|++|+++.+.+.......+ ..+++|++|+++++. ++.++...+..+++|+.|+++ ++ .+
T Consensus 111 L~~L~l~~n~l~~~~~~~~-----------~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~---~n----~l 169 (270)
T 2o6q_A 111 LAELRLDRNQLKSLPPRVF-----------DSLTKLTYLSLGYNE---LQSLPKGVFDKLTSLKELRLY---NN----QL 169 (270)
T ss_dssp CCEEECCSSCCCCCCTTTT-----------TTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECC---SS----CC
T ss_pred CCEEECCCCccCeeCHHHh-----------CcCcCCCEEECCCCc---CCccCHhHccCCcccceeEec---CC----cC
Confidence 6666665554444333333 556666666665544 555555445566666666665 44 22
Q ss_pred CccccchhhhhccCCCccceeeecCCcc
Q 039096 398 RDDKAWGLSCLTRYPRLSKLVLDFGDTD 425 (554)
Q Consensus 398 ~~~~~~~l~~l~~~~~L~~L~l~c~~~~ 425 (554)
+ ......+..+++|+.|+++.|.++
T Consensus 170 ~---~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 170 K---RVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp S---CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred c---EeChhHhccCCCcCEEECCCCcCC
Confidence 2 111123444566666666644443
No 92
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.89 E-value=3.2e-10 Score=108.97 Aligned_cols=181 Identities=15% Similarity=0.138 Sum_probs=120.7
Q ss_pred CCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCC
Q 039096 196 PLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNI 275 (554)
Q Consensus 196 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i 275 (554)
++|++|+++++ ++++... ..+ ..+++|++|+ +++|. ++.... .....+++|++|++++|. +
T Consensus 37 ~~l~~L~l~~n-~l~~~~~--~~~-~~l~~L~~L~------------l~~n~-l~~i~~-~~~~~l~~L~~L~l~~n~-l 97 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLPS--KAF-HRLTKLRLLY------------LNDNK-LQTLPA-GIFKELKNLETLWVTDNK-L 97 (270)
T ss_dssp TTCSEEECCSS-CCSCCCT--TSS-SSCTTCCEEE------------CCSSC-CSCCCT-TTTSSCTTCCEEECCSSC-C
T ss_pred CCCCEEECcCC-CCCeeCH--HHh-cCCCCCCEEE------------CCCCc-cCeeCh-hhhcCCCCCCEEECCCCc-C
Confidence 58999999884 5866542 244 5666666555 44443 332111 122348999999999987 5
Q ss_pred CHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCce
Q 039096 276 TVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKE 355 (554)
Q Consensus 276 ~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 355 (554)
+..... ....+ ++|++|+++++....... .....+++|++|+++.+.+.......+ ..+++|++
T Consensus 98 ~~~~~~-~~~~l-~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----------~~l~~L~~ 161 (270)
T 2o6q_A 98 QALPIG-VFDQL-VNLAELRLDRNQLKSLPP---RVFDSLTKLTYLSLGYNELQSLPKGVF-----------DKLTSLKE 161 (270)
T ss_dssp CCCCTT-TTTTC-SSCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCCCCTTTT-----------TTCTTCCE
T ss_pred CcCCHh-Hcccc-cCCCEEECCCCccCeeCH---HHhCcCcCCCEEECCCCcCCccCHhHc-----------cCCcccce
Confidence 432211 12234 799999999886442111 122457899999998887665554445 78999999
Q ss_pred EEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCc
Q 039096 356 LSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDT 424 (554)
Q Consensus 356 L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~ 424 (554)
|+++++. ++.+....+..+++|+.|+++ ++ .++ ......+..+++|+.|+++.|.+
T Consensus 162 L~L~~n~---l~~~~~~~~~~l~~L~~L~L~---~N----~l~---~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 162 LRLYNNQ---LKRVPEGAFDKLTELKTLKLD---NN----QLK---RVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EECCSSC---CSCCCTTTTTTCTTCCEEECC---SS----CCS---CCCTTTTTTCTTCCEEECCSSCB
T ss_pred eEecCCc---CcEeChhHhccCCCcCEEECC---CC----cCC---cCCHHHhccccCCCEEEecCCCe
Confidence 9998775 777777778889999999998 66 333 22223456689999999986644
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.88 E-value=1.4e-09 Score=105.56 Aligned_cols=175 Identities=13% Similarity=0.083 Sum_probs=118.3
Q ss_pred CCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCC
Q 039096 194 GLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCK 273 (554)
Q Consensus 194 ~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~ 273 (554)
.+++|++|++++|. +++. ..+ ..+++|+.|+ +++|. +++... ...+++|+.|++++|.
T Consensus 44 ~l~~L~~L~l~~~~-i~~~----~~~-~~l~~L~~L~------------L~~n~-l~~~~~---l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSV----QGI-QYLPNVTKLF------------LNGNK-LTDIKP---LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHTCCEEECTTSC-CCCC----TTG-GGCTTCCEEE------------CCSSC-CCCCGG---GTTCTTCCEEECCSSC
T ss_pred hcCcccEEEccCCC-cccC----hhH-hcCCCCCEEE------------ccCCc-cCCCcc---cccCCCCCEEECCCCc
Confidence 35789999998854 6543 234 5677777554 44454 333221 3448899999999987
Q ss_pred CCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCC
Q 039096 274 NITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSL 353 (554)
Q Consensus 274 ~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 353 (554)
+++ +.. ...+ ++|++|++++|... ... . ...+++|++|+++.+.+... ..+ ..+++|
T Consensus 102 -l~~--~~~-l~~l-~~L~~L~L~~n~i~-~~~---~-l~~l~~L~~L~l~~n~l~~~--~~l-----------~~l~~L 158 (291)
T 1h6t_A 102 -VKD--LSS-LKDL-KKLKSLSLEHNGIS-DIN---G-LVHLPQLESLYLGNNKITDI--TVL-----------SRLTKL 158 (291)
T ss_dssp -CCC--GGG-GTTC-TTCCEEECTTSCCC-CCG---G-GGGCTTCCEEECCSSCCCCC--GGG-----------GGCTTC
T ss_pred -CCC--Chh-hccC-CCCCEEECCCCcCC-CCh---h-hcCCCCCCEEEccCCcCCcc--hhh-----------ccCCCC
Confidence 553 222 2333 78999999888644 221 2 23578899999987765443 344 688999
Q ss_pred ceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCccccccc
Q 039096 354 KELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQA 430 (554)
Q Consensus 354 ~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~~ 430 (554)
+.|++++|. ++++.. +..+++|+.|+++ +| .++ + +..+..+++|+.|+++.|.++..+..
T Consensus 159 ~~L~L~~N~---l~~~~~--l~~l~~L~~L~L~---~N----~i~---~--l~~l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 159 DTLSLEDNQ---ISDIVP--LAGLTKLQNLYLS---KN----HIS---D--LRALAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp SEEECCSSC---CCCCGG--GTTCTTCCEEECC---SS----CCC---B--CGGGTTCTTCSEEEEEEEEEECCCEE
T ss_pred CEEEccCCc---cccchh--hcCCCccCEEECC---CC----cCC---C--ChhhccCCCCCEEECcCCcccCCccc
Confidence 999998776 666654 7889999999997 55 334 2 23577799999999997777665443
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.86 E-value=1.8e-09 Score=98.28 Aligned_cols=130 Identities=12% Similarity=0.083 Sum_probs=73.8
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCC
Q 039096 261 CSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGN 340 (554)
Q Consensus 261 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 340 (554)
+++|++|++++|. +++. ..+ ..+ ++|++|++++|... .. .... ...+++|++|+++.+.+....+..+
T Consensus 65 l~~L~~L~l~~n~-~~~~--~~l-~~l-~~L~~L~l~~n~l~-~~-~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~l---- 132 (197)
T 4ezg_A 65 AHNIKDLTINNIH-ATNY--NPI-SGL-SNLERLRIMGKDVT-SD-KIPN-LSGLTSLTLLDISHSAHDDSILTKI---- 132 (197)
T ss_dssp CTTCSEEEEESCC-CSCC--GGG-TTC-TTCCEEEEECTTCB-GG-GSCC-CTTCTTCCEEECCSSBCBGGGHHHH----
T ss_pred CCCCCEEEccCCC-CCcc--hhh-hcC-CCCCEEEeECCccC-cc-cChh-hcCCCCCCEEEecCCccCcHhHHHH----
Confidence 6667777776664 3322 111 123 66777777665432 11 1111 2236777777777666555555555
Q ss_pred ccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeee
Q 039096 341 TSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLD 420 (554)
Q Consensus 341 ~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~ 420 (554)
..+++|++|++++|.. +++++ .+..+++|+.|+++ +| .++ + +..+..+++|+.|+++
T Consensus 133 -------~~l~~L~~L~L~~n~~--i~~~~--~l~~l~~L~~L~l~---~n----~i~---~--~~~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 133 -------NTLPKVNSIDLSYNGA--ITDIM--PLKTLPELKSLNIQ---FD----GVH---D--YRGIEDFPKLNQLYAF 189 (197)
T ss_dssp -------TTCSSCCEEECCSCTB--CCCCG--GGGGCSSCCEEECT---TB----CCC---C--CTTGGGCSSCCEEEEC
T ss_pred -------hhCCCCCEEEccCCCC--ccccH--hhcCCCCCCEEECC---CC----CCc---C--hHHhccCCCCCEEEee
Confidence 5677788888876653 44443 46677788888876 55 333 2 1245567778888877
Q ss_pred cCCcc
Q 039096 421 FGDTD 425 (554)
Q Consensus 421 c~~~~ 425 (554)
.|.+.
T Consensus 190 ~N~i~ 194 (197)
T 4ezg_A 190 SQTIG 194 (197)
T ss_dssp BC---
T ss_pred CcccC
Confidence 66654
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.84 E-value=2.1e-10 Score=108.00 Aligned_cols=10 Identities=10% Similarity=-0.310 Sum_probs=4.8
Q ss_pred cccceeeecc
Q 039096 484 ITLRKVFVHC 493 (554)
Q Consensus 484 ~~L~~L~i~~ 493 (554)
++|+.|++++
T Consensus 205 ~~L~~L~l~~ 214 (239)
T 2xwt_C 205 SGPSLLDVSQ 214 (239)
T ss_dssp BCCSEEECTT
T ss_pred cCCcEEECCC
Confidence 4445555443
No 96
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.84 E-value=8.5e-10 Score=107.07 Aligned_cols=181 Identities=17% Similarity=0.110 Sum_probs=107.1
Q ss_pred hCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCC
Q 039096 193 SGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGC 272 (554)
Q Consensus 193 ~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c 272 (554)
..+++++++++++ ++++.... .-.++++ .|++++|. ++......+. .+++|+.|++++|
T Consensus 7 ~~l~~l~~l~~~~-~~l~~ip~------~~~~~l~------------~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~n 65 (290)
T 1p9a_G 7 SKVASHLEVNCDK-RNLTALPP------DLPKDTT------------ILHLSENL-LYTFSLATLM-PYTRLTQLNLDRA 65 (290)
T ss_dssp ECSTTCCEEECTT-SCCSSCCS------CCCTTCC------------EEECTTSC-CSEEEGGGGT-TCTTCCEEECTTS
T ss_pred cccCCccEEECCC-CCCCcCCC------CCCCCCC------------EEEcCCCc-CCccCHHHhh-cCCCCCEEECCCC
Confidence 3567889999977 44644321 1123445 55555554 3332222232 3778888888877
Q ss_pred CCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCC
Q 039096 273 KNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKS 352 (554)
Q Consensus 273 ~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (554)
. ++.... . ..+ ++|++|+++++... . +......+++|++|+++.+.++......+ ..+++
T Consensus 66 ~-l~~~~~--~-~~l-~~L~~L~Ls~N~l~-~---l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-----------~~l~~ 125 (290)
T 1p9a_G 66 E-LTKLQV--D-GTL-PVLGTLDLSHNQLQ-S---LPLLGQTLPALTVLDVSFNRLTSLPLGAL-----------RGLGE 125 (290)
T ss_dssp C-CCEEEC--C-SCC-TTCCEEECCSSCCS-S---CCCCTTTCTTCCEEECCSSCCCCCCSSTT-----------TTCTT
T ss_pred c-cCcccC--C-CCC-CcCCEEECCCCcCC-c---CchhhccCCCCCEEECCCCcCcccCHHHH-----------cCCCC
Confidence 6 442111 1 233 67888888776533 1 11223446778888887776554444445 67788
Q ss_pred CceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCcccc
Q 039096 353 LKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGH 427 (554)
Q Consensus 353 L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~ 427 (554)
|++|+++++. ++.++...+..+++|+.|+++ +++ ++ ......+..+++|+.|+++.|.++..
T Consensus 126 L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~---~N~----l~---~l~~~~~~~l~~L~~L~L~~N~l~~i 187 (290)
T 1p9a_G 126 LQELYLKGNE---LKTLPPGLLTPTPKLEKLSLA---NNN----LT---ELPAGLLNGLENLDTLLLQENSLYTI 187 (290)
T ss_dssp CCEEECTTSC---CCCCCTTTTTTCTTCCEEECT---TSC----CS---CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCEEECCCCC---CCccChhhcccccCCCEEECC---CCc----CC---ccCHHHhcCcCCCCEEECCCCcCCcc
Confidence 8888887655 666666656778888888886 552 22 11112345577888888887766643
No 97
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.80 E-value=3.5e-09 Score=102.75 Aligned_cols=178 Identities=16% Similarity=0.053 Sum_probs=118.3
Q ss_pred CCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCC
Q 039096 196 PLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNI 275 (554)
Q Consensus 196 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i 275 (554)
++++.|+++++ .++...+ ..+ ..+++|+.|+++++. ++.+... ..+++|+.|++++|. +
T Consensus 31 ~~l~~L~L~~N-~l~~~~~--~~~-~~l~~L~~L~L~~n~--l~~~~~~--------------~~l~~L~~L~Ls~N~-l 89 (290)
T 1p9a_G 31 KDTTILHLSEN-LLYTFSL--ATL-MPYTRLTQLNLDRAE--LTKLQVD--------------GTLPVLGTLDLSHNQ-L 89 (290)
T ss_dssp TTCCEEECTTS-CCSEEEG--GGG-TTCTTCCEEECTTSC--CCEEECC--------------SCCTTCCEEECCSSC-C
T ss_pred CCCCEEEcCCC-cCCccCH--HHh-hcCCCCCEEECCCCc--cCcccCC--------------CCCCcCCEEECCCCc-C
Confidence 68999999885 4765442 245 677888877766542 3322211 237889999999887 4
Q ss_pred CHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCce
Q 039096 276 TVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKE 355 (554)
Q Consensus 276 ~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 355 (554)
+. +......+ ++|++|+++++....... .....+++|++|+++.+.+.......+ ..+++|+.
T Consensus 90 ~~--l~~~~~~l-~~L~~L~l~~N~l~~l~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~-----------~~l~~L~~ 152 (290)
T 1p9a_G 90 QS--LPLLGQTL-PALTVLDVSFNRLTSLPL---GALRGLGELQELYLKGNELKTLPPGLL-----------TPTPKLEK 152 (290)
T ss_dssp SS--CCCCTTTC-TTCCEEECCSSCCCCCCS---STTTTCTTCCEEECTTSCCCCCCTTTT-----------TTCTTCCE
T ss_pred Cc--CchhhccC-CCCCEEECCCCcCcccCH---HHHcCCCCCCEEECCCCCCCccChhhc-----------ccccCCCE
Confidence 41 11122334 789999998876432110 122357889999998776665544444 67899999
Q ss_pred EEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCcc
Q 039096 356 LSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTD 425 (554)
Q Consensus 356 L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~ 425 (554)
|+++++. ++.++...+..+++|+.|+++ +++... ++ ..+...++|+.|+++.|.+.
T Consensus 153 L~L~~N~---l~~l~~~~~~~l~~L~~L~L~---~N~l~~-ip-------~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 153 LSLANNN---LTELPAGLLNGLENLDTLLLQ---ENSLYT-IP-------KGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EECTTSC---CSCCCTTTTTTCTTCCEEECC---SSCCCC-CC-------TTTTTTCCCSEEECCSCCBC
T ss_pred EECCCCc---CCccCHHHhcCcCCCCEEECC---CCcCCc-cC-------hhhcccccCCeEEeCCCCcc
Confidence 9998765 778877767889999999998 663321 11 23445678999999866543
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.80 E-value=2.2e-09 Score=114.71 Aligned_cols=173 Identities=15% Similarity=0.100 Sum_probs=98.2
Q ss_pred CCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCC
Q 039096 194 GLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCK 273 (554)
Q Consensus 194 ~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~ 273 (554)
.+++|+.|++++|. +.+. ..+ ..+++|+.|+|++ |. +++... ...+++|+.|+|++|.
T Consensus 41 ~L~~L~~L~l~~n~-i~~l----~~l-~~l~~L~~L~Ls~------------N~-l~~~~~---l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSV----QGI-QYLPNVTKLFLNG------------NK-LTDIKP---LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCC----TTG-GGCTTCCEEECTT------------SC-CCCCGG---GGGCTTCCEEECCSSC
T ss_pred cCCCCCEEECcCCC-CCCC----hHH-ccCCCCCEEEeeC------------CC-CCCChh---hccCCCCCEEECcCCC
Confidence 34678888887754 5442 234 5667666555444 33 222111 2336777777777776
Q ss_pred CCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCC
Q 039096 274 NITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSL 353 (554)
Q Consensus 274 ~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 353 (554)
+++ +..+ ..+ ++|+.|++++|... ... . ...+++|+.|+|+.+.+... ..+ ..+++|
T Consensus 99 -l~~--l~~l-~~l-~~L~~L~Ls~N~l~-~l~---~-l~~l~~L~~L~Ls~N~l~~l--~~l-----------~~l~~L 155 (605)
T 1m9s_A 99 -IKD--LSSL-KDL-KKLKSLSLEHNGIS-DIN---G-LVHLPQLESLYLGNNKITDI--TVL-----------SRLTKL 155 (605)
T ss_dssp -CCC--CTTS-TTC-TTCCEEECTTSCCC-CCG---G-GGGCTTCSEEECCSSCCCCC--GGG-----------GSCTTC
T ss_pred -CCC--Chhh-ccC-CCCCEEEecCCCCC-CCc---c-ccCCCccCEEECCCCccCCc--hhh-----------cccCCC
Confidence 442 1111 223 67777777776533 221 1 23467777777766654332 334 567777
Q ss_pred ceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCccccc
Q 039096 354 KELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHN 428 (554)
Q Consensus 354 ~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~ 428 (554)
+.|+|++|. ++++.. +..+++|+.|+++ +| .++ + +..+..+++|+.|+|+.+.+++.+
T Consensus 156 ~~L~Ls~N~---l~~~~~--l~~l~~L~~L~Ls---~N----~i~---~--l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 156 DTLSLEDNQ---ISDIVP--LAGLTKLQNLYLS---KN----HIS---D--LRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp SEEECCSSC---CCCCGG--GTTCTTCCEEECC---SS----CCC---B--CGGGTTCTTCSEEECCSEEEECCC
T ss_pred CEEECcCCc---CCCchh--hccCCCCCEEECc---CC----CCC---C--ChHHccCCCCCEEEccCCcCcCCc
Confidence 777776665 555443 6677777777776 44 233 1 234566777777777755555544
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.78 E-value=5.4e-09 Score=95.16 Aligned_cols=133 Identities=11% Similarity=0.051 Sum_probs=97.9
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCC
Q 039096 261 CSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGN 340 (554)
Q Consensus 261 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 340 (554)
+++|+.|++++|. +++. .. ...+ ++|++|++++|. +.... . ...+++|++|+++.+.+....+..+
T Consensus 43 l~~L~~L~l~~n~-i~~l--~~-l~~l-~~L~~L~l~~n~-~~~~~---~-l~~l~~L~~L~l~~n~l~~~~~~~l---- 108 (197)
T 4ezg_A 43 MNSLTYITLANIN-VTDL--TG-IEYA-HNIKDLTINNIH-ATNYN---P-ISGLSNLERLRIMGKDVTSDKIPNL---- 108 (197)
T ss_dssp HHTCCEEEEESSC-CSCC--TT-GGGC-TTCSEEEEESCC-CSCCG---G-GTTCTTCCEEEEECTTCBGGGSCCC----
T ss_pred cCCccEEeccCCC-ccCh--HH-HhcC-CCCCEEEccCCC-CCcch---h-hhcCCCCCEEEeECCccCcccChhh----
Confidence 5679999999887 5531 11 2334 899999999994 43332 2 2358899999998887666566666
Q ss_pred ccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeee
Q 039096 341 TSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLD 420 (554)
Q Consensus 341 ~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~ 420 (554)
..+++|++|++++|. +++.....+..+++|+.|+++ +| ..++ +. ..+..+++|+.|+++
T Consensus 109 -------~~l~~L~~L~Ls~n~---i~~~~~~~l~~l~~L~~L~L~---~n---~~i~---~~--~~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 109 -------SGLTSLTLLDISHSA---HDDSILTKINTLPKVNSIDLS---YN---GAIT---DI--MPLKTLPELKSLNIQ 167 (197)
T ss_dssp -------TTCTTCCEEECCSSB---CBGGGHHHHTTCSSCCEEECC---SC---TBCC---CC--GGGGGCSSCCEEECT
T ss_pred -------cCCCCCCEEEecCCc---cCcHhHHHHhhCCCCCEEEcc---CC---CCcc---cc--HhhcCCCCCCEEECC
Confidence 789999999998776 666556667899999999998 67 2244 22 257779999999999
Q ss_pred cCCccccc
Q 039096 421 FGDTDGHN 428 (554)
Q Consensus 421 c~~~~~~~ 428 (554)
.+.+++..
T Consensus 168 ~n~i~~~~ 175 (197)
T 4ezg_A 168 FDGVHDYR 175 (197)
T ss_dssp TBCCCCCT
T ss_pred CCCCcChH
Confidence 77777643
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.77 E-value=2e-09 Score=102.14 Aligned_cols=89 Identities=19% Similarity=0.189 Sum_probs=52.1
Q ss_pred cCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCC
Q 039096 314 IRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTRE 393 (554)
Q Consensus 314 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~ 393 (554)
.+++|++|+++.+.+.......+ ..+++|++|+++++. ++.++...+..+++|+.|+++ ++
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~~~-----------~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~---~N-- 165 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSGVF-----------DRLTKLKELRLNTNQ---LQSIPAGAFDKLTNLQTLSLS---TN-- 165 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTT-----------TTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECC---SS--
T ss_pred ccCCCCEEEcCCCcCCCcChhHh-----------ccCCcccEEECcCCc---CCccCHHHcCcCcCCCEEECC---CC--
Confidence 35667777776665443333333 566777777776554 666666556677777777776 44
Q ss_pred CCCCCccccchhhhhccCCCccceeeecCCccc
Q 039096 394 KPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDG 426 (554)
Q Consensus 394 ~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~ 426 (554)
.++ ......+..+++|+.|+++.|.++.
T Consensus 166 --~l~---~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 166 --QLQ---SVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp --CCS---CCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred --cCC---ccCHHHHhCCCCCCEEEeeCCceeC
Confidence 222 1111244556777777777555543
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.76 E-value=8.6e-10 Score=103.80 Aligned_cols=185 Identities=14% Similarity=0.071 Sum_probs=101.2
Q ss_pred CCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCC
Q 039096 196 PLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNI 275 (554)
Q Consensus 196 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i 275 (554)
++|++|+++++ +++..... .+ ..+++|+.|++++ |..++......+ ..+++|++|++++|..+
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~--~~-~~l~~L~~L~l~~------------n~~l~~i~~~~f-~~l~~L~~L~l~~~n~l 93 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSH--AF-SNLPNISRIYVSI------------DVTLQQLESHSF-YNLSKVTHIEIRNTRNL 93 (239)
T ss_dssp TTCCEEEEESC-CCSEECTT--TT-TTCTTCCEEEEEC------------CSSCCEECTTTE-ESCTTCCEEEEEEETTC
T ss_pred CcccEEEEeCC-cceEECHH--Hc-cCCCCCcEEeCCC------------CCCcceeCHhHc-CCCcCCcEEECCCCCCe
Confidence 47899999884 47554321 34 5677777555544 321221111111 23677888888773224
Q ss_pred CHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCcc---EEEeeee-eccccchhhhccCCccchhhhhcCC
Q 039096 276 TVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQ---KLHIDCV-WDGIRSSEAKATGNTSTIFSKTRWK 351 (554)
Q Consensus 276 ~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (554)
+...... ...+ ++|++|++++|... .. +. ...+++|+ +|+++.+ .+.......+ ..++
T Consensus 94 ~~i~~~~-f~~l-~~L~~L~l~~n~l~-~l---p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-----------~~l~ 155 (239)
T 2xwt_C 94 TYIDPDA-LKEL-PLLKFLGIFNTGLK-MF---PD-LTKVYSTDIFFILEITDNPYMTSIPVNAF-----------QGLC 155 (239)
T ss_dssp CEECTTS-EECC-TTCCEEEEEEECCC-SC---CC-CTTCCBCCSEEEEEEESCTTCCEECTTTT-----------TTTB
T ss_pred eEcCHHH-hCCC-CCCCEEeCCCCCCc-cc---cc-cccccccccccEEECCCCcchhhcCcccc-----------cchh
Confidence 4211111 1123 67788888777533 21 11 23456666 7777666 5444444444 5677
Q ss_pred CCc-eEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccC-CCccceeeecCCccccc
Q 039096 352 SLK-ELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRY-PRLSKLVLDFGDTDGHN 428 (554)
Q Consensus 352 ~L~-~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~-~~L~~L~l~c~~~~~~~ 428 (554)
+|+ +|+++++. ++.++...+.. ++|+.|+++ +| ..++ ......+..+ ++|+.|+++.+.++..+
T Consensus 156 ~L~~~L~l~~n~---l~~i~~~~~~~-~~L~~L~L~---~n---~~l~---~i~~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 156 NETLTLKLYNNG---FTSVQGYAFNG-TKLDAVYLN---KN---KYLT---VIDKDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp SSEEEEECCSCC---CCEECTTTTTT-CEEEEEECT---TC---TTCC---EECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred cceeEEEcCCCC---CcccCHhhcCC-CCCCEEEcC---CC---CCcc---cCCHHHhhccccCCcEEECCCCccccCC
Confidence 888 88886554 55555544444 678888886 55 1233 2222345556 78888888766666543
No 102
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=1.6e-07 Score=84.31 Aligned_cols=134 Identities=16% Similarity=0.080 Sum_probs=72.4
Q ss_pred hHHHhhcCcCCCCccEEEcCCC-CCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCC
Q 039096 97 PPVLKAYPDKSAILTCLNLLKT-SFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDG 175 (554)
Q Consensus 97 ~~~l~~l~~~~~~L~~L~L~~~-~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g 175 (554)
...+......+++|++|+|++| . +++.+...+. .....+++|++|++++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~----i~~~g~~~l~-----------~~L~~~~~L~~L~Ls~--------------- 74 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMN----IPVPTLKACA-----------EALKTNTYVKKFSIVG--------------- 74 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTT----CCHHHHHHHH-----------HHHTTCCSCCEEECTT---------------
T ss_pred HHHHHHHHhcCCCCCEEEecCCCC----CCHHHHHHHH-----------HHHHhCCCcCEEECcC---------------
Confidence 3344444444567777777766 5 6666666553 1222456777777765
Q ss_pred CccccCCCCHHHHHHHH---hCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEe--cCCCCCC
Q 039096 176 FTAEDARISEEGLIQLF---SGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSI--KNCGDLS 250 (554)
Q Consensus 176 ~~~~~~~i~~~~l~~l~---~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l--~~~~~l~ 250 (554)
+.+++.+...+. ...++|++|+|++| .+++.+ ...++..+..-+ +|++|++ ++|. ++
T Consensus 75 -----n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g--~~~l~~~L~~n~---------~L~~L~L~~~~N~-i~ 136 (185)
T 1io0_A 75 -----TRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSG--ILALVEALQSNT---------SLIELRIDNQSQP-LG 136 (185)
T ss_dssp -----SCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHH--HHHHHHGGGGCS---------SCCEEECCCCSSC-CC
T ss_pred -----CCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHH--HHHHHHHHHhCC---------CceEEEecCCCCC-CC
Confidence 345665554443 23466777777664 466655 334443322111 3445555 4555 66
Q ss_pred HHHHHHHHh---cCCCCcEEEecCCCCCCHHH
Q 039096 251 DMSLVAIGR---GCSKLVKFEVEGCKNITVDG 279 (554)
Q Consensus 251 ~~~l~~l~~---~~~~L~~L~L~~c~~i~~~~ 279 (554)
+.+...++. ..++|++|++++|. +++.|
T Consensus 137 ~~g~~~l~~~L~~n~~L~~L~L~~n~-i~~~~ 167 (185)
T 1io0_A 137 NNVEMEIANMLEKNTTLLKFGYHFTQ-QGPRL 167 (185)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCSS-HHHHH
T ss_pred HHHHHHHHHHHHhCCCcCEEeccCCC-CChHH
Confidence 666444433 24667777777666 55554
No 103
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.67 E-value=1.5e-07 Score=84.51 Aligned_cols=134 Identities=21% Similarity=0.208 Sum_probs=94.5
Q ss_pred HHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHh---cC
Q 039096 185 EEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGR---GC 261 (554)
Q Consensus 185 ~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~---~~ 261 (554)
.+.+..+...++.|++|+|++|+.+++.+ ...++..+..-+ +|++|++++|. +++.+...++. ..
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g--~~~l~~~L~~~~---------~L~~L~Ls~n~-i~~~g~~~l~~~L~~n 92 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPT--LKACAEALKTNT---------YVKKFSIVGTR-SNDPVAFALAEMLKVN 92 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHH--HHHHHHHHTTCC---------SCCEEECTTSC-CCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHH--HHHHHHHHHhCC---------CcCEEECcCCC-CChHHHHHHHHHHHhC
Confidence 35566777788999999999874688877 445544332222 45578888887 89988766654 35
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHHHhc--CCccEEEE--eccCCCChhH--HHHHHhhcCCCccEEEeeeeeccccc
Q 039096 262 SKLVKFEVEGCKNITVDGLRTLASLLR--ETLVVIKI--YCCENLGAVA--SCKALKPIRDRIQKLHIDCVWDGIRS 332 (554)
Q Consensus 262 ~~L~~L~L~~c~~i~~~~~~~l~~~~~--~~L~~L~l--~~c~~~~~~~--~l~~l~~~~~~L~~L~l~~~~~~~~~ 332 (554)
++|++|+|++|. |++.|...+...+. ++|++|++ +++. ++... .+......++.|++|+++.+.++..+
T Consensus 93 ~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 93 NTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp SSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred CCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 789999999998 99999988887652 57999999 5554 43321 23344455788999999777665544
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.66 E-value=1.2e-08 Score=109.03 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=93.5
Q ss_pred cCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcE
Q 039096 149 NCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKG 228 (554)
Q Consensus 149 ~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~ 228 (554)
.+++|+.|++++|. +... .. ...+++|+.|+|++|. +++.. .+ ..+++|+.
T Consensus 41 ~L~~L~~L~l~~n~--------------------i~~l--~~-l~~l~~L~~L~Ls~N~-l~~~~----~l-~~l~~L~~ 91 (605)
T 1m9s_A 41 ELNSIDQIIANNSD--------------------IKSV--QG-IQYLPNVTKLFLNGNK-LTDIK----PL-TNLKNLGW 91 (605)
T ss_dssp HHTTCCCCBCTTCC--------------------CCCC--TT-GGGCTTCCEEECTTSC-CCCCG----GG-GGCTTCCE
T ss_pred cCCCCCEEECcCCC--------------------CCCC--hH-HccCCCCCEEEeeCCC-CCCCh----hh-ccCCCCCE
Confidence 45789999997751 1111 11 3578999999998864 76643 24 67888887
Q ss_pred eecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHH
Q 039096 229 LKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASC 308 (554)
Q Consensus 229 L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l 308 (554)
|+|+++. +++. ..+ ..+++|+.|+|++|. +++. .. ...+ ++|+.|++++|... ..
T Consensus 92 L~Ls~N~-------------l~~l--~~l-~~l~~L~~L~Ls~N~-l~~l--~~-l~~l-~~L~~L~Ls~N~l~-~l--- 146 (605)
T 1m9s_A 92 LFLDENK-------------IKDL--SSL-KDLKKLKSLSLEHNG-ISDI--NG-LVHL-PQLESLYLGNNKIT-DI--- 146 (605)
T ss_dssp EECCSSC-------------CCCC--TTS-TTCTTCCEEECTTSC-CCCC--GG-GGGC-TTCSEEECCSSCCC-CC---
T ss_pred EECcCCC-------------CCCC--hhh-ccCCCCCEEEecCCC-CCCC--cc-ccCC-CccCEEECCCCccC-Cc---
Confidence 7766553 2211 111 226666777776665 3321 11 1223 66677777666433 21
Q ss_pred HHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEe
Q 039096 309 KALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIK 386 (554)
Q Consensus 309 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~ 386 (554)
.....+++|+.|+|+.+.+..... + ..+++|+.|+|++|. ++++ ..+..+++|+.|+++
T Consensus 147 -~~l~~l~~L~~L~Ls~N~l~~~~~--l-----------~~l~~L~~L~Ls~N~---i~~l--~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 147 -TVLSRLTKLDTLSLEDNQISDIVP--L-----------AGLTKLQNLYLSKNH---ISDL--RALAGLKNLDVLELF 205 (605)
T ss_dssp -GGGGSCTTCSEEECCSSCCCCCGG--G-----------TTCTTCCEEECCSSC---CCBC--GGGTTCTTCSEEECC
T ss_pred -hhhcccCCCCEEECcCCcCCCchh--h-----------ccCCCCCEEECcCCC---CCCC--hHHccCCCCCEEEcc
Confidence 122346667777775554433222 3 556677777776554 4444 235666677777765
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.66 E-value=2.2e-08 Score=94.92 Aligned_cols=105 Identities=12% Similarity=0.058 Sum_probs=48.6
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCc
Q 039096 262 SKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNT 341 (554)
Q Consensus 262 ~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 341 (554)
++|+.|++++|. ++......+ ..+ ++|++|+++++...... ......+++|++|+++.+.+.......+
T Consensus 35 ~~l~~L~L~~n~-l~~~~~~~~-~~l-~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~----- 103 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLSDATF-RGL-TKLTWLNLDYNQLQTLS---AGVFDDLTELGTLGLANNQLASLPLGVF----- 103 (251)
T ss_dssp TTCCEEECTTSC-CCCCCTTTT-TTC-TTCCEEECTTSCCCCCC---TTTTTTCTTCCEEECTTSCCCCCCTTTT-----
T ss_pred CCCCEEEccCCC-cCccCHhHh-cCc-ccCCEEECCCCcCCccC---HhHhccCCcCCEEECCCCcccccChhHh-----
Confidence 456677777665 332111111 122 55666666555322110 0111234556666665544433333333
Q ss_pred cchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEe
Q 039096 342 STIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIK 386 (554)
Q Consensus 342 ~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~ 386 (554)
..+++|++|+++++. ++.++...+..+++|+.|+++
T Consensus 104 ------~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 104 ------DHLTQLDKLYLGGNQ---LKSLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp ------TTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECC
T ss_pred ------cccCCCCEEEcCCCc---CCCcChhHhccCCcccEEECc
Confidence 455556666665443 444444444555566666655
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.66 E-value=4.1e-08 Score=95.17 Aligned_cols=147 Identities=13% Similarity=0.115 Sum_probs=103.7
Q ss_pred ccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCC
Q 039096 238 LESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDR 317 (554)
Q Consensus 238 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~ 317 (554)
|+.|++++|. +++. ..+ ..+++|+.|++++|. +++.. . ...+ ++|++|++++|... ... . ...+++
T Consensus 48 L~~L~l~~~~-i~~~--~~~-~~l~~L~~L~L~~n~-l~~~~--~-l~~l-~~L~~L~l~~n~l~-~~~---~-l~~l~~ 113 (291)
T 1h6t_A 48 IDQIIANNSD-IKSV--QGI-QYLPNVTKLFLNGNK-LTDIK--P-LANL-KNLGWLFLDENKVK-DLS---S-LKDLKK 113 (291)
T ss_dssp CCEEECTTSC-CCCC--TTG-GGCTTCCEEECCSSC-CCCCG--G-GTTC-TTCCEEECCSSCCC-CGG---G-GTTCTT
T ss_pred ccEEEccCCC-cccC--hhH-hcCCCCCEEEccCCc-cCCCc--c-cccC-CCCCEEECCCCcCC-CCh---h-hccCCC
Confidence 4456666654 3332 123 348999999999998 55422 2 3344 89999999998644 322 2 345889
Q ss_pred ccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCC
Q 039096 318 IQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLL 397 (554)
Q Consensus 318 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l 397 (554)
|++|+++.+.+... ..+ ..+++|+.|++++|. ++++ ..+..+++|+.|+++ +| .+
T Consensus 114 L~~L~L~~n~i~~~--~~l-----------~~l~~L~~L~l~~n~---l~~~--~~l~~l~~L~~L~L~---~N----~l 168 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGL-----------VHLPQLESLYLGNNK---ITDI--TVLSRLTKLDTLSLE---DN----QI 168 (291)
T ss_dssp CCEEECTTSCCCCC--GGG-----------GGCTTCCEEECCSSC---CCCC--GGGGGCTTCSEEECC---SS----CC
T ss_pred CCEEECCCCcCCCC--hhh-----------cCCCCCCEEEccCCc---CCcc--hhhccCCCCCEEEcc---CC----cc
Confidence 99999977765442 344 689999999998776 6665 457889999999998 66 33
Q ss_pred CccccchhhhhccCCCccceeeecCCccccc
Q 039096 398 RDDKAWGLSCLTRYPRLSKLVLDFGDTDGHN 428 (554)
Q Consensus 398 ~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~ 428 (554)
+ +. ..+..+++|+.|+++.|.+++..
T Consensus 169 ~---~~--~~l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 169 S---DI--VPLAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp C---CC--GGGTTCTTCCEEECCSSCCCBCG
T ss_pred c---cc--hhhcCCCccCEEECCCCcCCCCh
Confidence 3 21 12777999999999988887753
No 107
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.61 E-value=4.4e-08 Score=96.84 Aligned_cols=122 Identities=11% Similarity=0.037 Sum_probs=87.1
Q ss_pred CCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCc
Q 039096 289 ETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTP 368 (554)
Q Consensus 289 ~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~ 368 (554)
.+++.+.+.+. + ....+..+...|++|+++++..+.+...+...+ .+|++|+++++.. + ++.
T Consensus 202 ~~~~~l~~~~~--l-~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF-----------~~~~~L~~l~l~~--n--i~~ 263 (329)
T 3sb4_A 202 RDINFLTIEGK--L-DNADFKLIRDYMPNLVSLDISKTNATTIPDFTF-----------AQKKYLLKIKLPH--N--LKT 263 (329)
T ss_dssp GGCSEEEEEEC--C-CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT-----------TTCTTCCEEECCT--T--CCE
T ss_pred cccceEEEeee--e-cHHHHHHHHHhcCCCeEEECCCCCcceecHhhh-----------hCCCCCCEEECCc--c--cce
Confidence 45566666554 2 233444555569999999997765555555555 7899999999964 2 677
Q ss_pred cccccCcCCCCCC-EEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCcccccccccccCCCCc
Q 039096 369 LPVAGLDECPILE-NIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQAAPYKAADLS 439 (554)
Q Consensus 369 l~~~~l~~~~~L~-~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~~~~~~~~~L~ 439 (554)
+....+.+|++|+ .+.+. ..+. ..+-.+|..|++|+.++++.+.++..+..+..+|++|.
T Consensus 264 I~~~aF~~~~~L~~~l~l~--------~~l~---~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 264 IGQRVFSNCGRLAGTLELP--------ASVT---AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp ECTTTTTTCTTCCEEEEEC--------TTCC---EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred ehHHHhhCChhccEEEEEc--------ccce---EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence 8888889999999 99997 4444 34445778899999999987888777766655555543
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.60 E-value=2.9e-08 Score=87.65 Aligned_cols=135 Identities=13% Similarity=0.117 Sum_probs=73.9
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCc
Q 039096 262 SKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNT 341 (554)
Q Consensus 262 ~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 341 (554)
++|++|++++|. +++..+......+ ++|++|++++|... .. .....+++|++|+++.+.+.......+
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l-~~L~~L~l~~n~l~-~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~----- 91 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEF-VNLEFLSLINVGLI-SV----SNLPKLPKLKKLELSENRIFGGLDMLA----- 91 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGG-GGCCEEEEESSCCC-CC----SSCCCCSSCCEEEEESCCCCSCCCHHH-----
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhC-CCCCEEeCcCCCCC-Ch----hhhccCCCCCEEECcCCcCchHHHHHH-----
Confidence 556666666665 3322222222233 66777777766532 21 122346677777776665544322222
Q ss_pred cchhhhhcCCCCceEEeecccCCccCcccc-ccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeee
Q 039096 342 STIFSKTRWKSLKELSFWIEVGELLTPLPV-AGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLD 420 (554)
Q Consensus 342 ~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~-~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~ 420 (554)
..+++|++|++++|. +++++. ..+..+++|+.|+++ +| .++.........+..+++|+.|+++
T Consensus 92 ------~~l~~L~~L~Ls~N~---l~~~~~~~~l~~l~~L~~L~l~---~N----~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 92 ------EKLPNLTHLNLSGNK---LKDISTLEPLKKLECLKSLDLF---NC----EVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp ------HHCTTCCEEECBSSS---CCSSGGGGGGSSCSCCCEEECC---SS----GGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred ------hhCCCCCEEeccCCc---cCcchhHHHHhcCCCCCEEEee---CC----cCcchHHHHHHHHHhCccCcEecCC
Confidence 557778888877664 566543 456777788888876 44 2220111111345567788888777
Q ss_pred cCCc
Q 039096 421 FGDT 424 (554)
Q Consensus 421 c~~~ 424 (554)
.+.+
T Consensus 156 ~n~~ 159 (168)
T 2ell_A 156 DRED 159 (168)
T ss_dssp ETTS
T ss_pred CCCh
Confidence 4433
No 109
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.53 E-value=6.9e-07 Score=88.92 Aligned_cols=184 Identities=19% Similarity=0.208 Sum_probs=100.9
Q ss_pred HhcCCCCcEEEecCCCC----C----CCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHH
Q 039096 75 LKHCKCLTSVDLSSFYH----W----TEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSI 146 (554)
Q Consensus 75 ~~~~~~L~~L~L~~~~~----~----~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~ 146 (554)
+..+++|+.|.+.+... + ...+...+..+ ++|+.|+|+++.. + ..+.+
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~----P~L~~L~L~g~~~---l----------~l~~~------- 190 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM----PLLNNLKIKGTNN---L----------SIGKK------- 190 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTC----TTCCEEEEECCBT---C----------BCCSC-------
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcC----CCCcEEEEeCCCC---c----------eeccc-------
Confidence 34567888887754311 0 11233444444 4788888875421 0 01111
Q ss_pred hccCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHh-CCCCCcEEEecCCCCC--CCchhhHHHHH---
Q 039096 147 ATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFS-GLPLLEELALDVGKNV--RDSGSASEALK--- 220 (554)
Q Consensus 147 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~-~~~~L~~L~L~~c~~l--~~~~~~l~~l~--- 220 (554)
..++|++|++.. ..++..++..+.. .+|+|++|+|+.+.+. .+.+ +..+.
T Consensus 191 --~~~~L~~L~L~~--------------------~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~--~~~l~~~l 246 (362)
T 2ra8_A 191 --PRPNLKSLEIIS--------------------GGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD--MNVFRPLF 246 (362)
T ss_dssp --BCTTCSEEEEEC--------------------SBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC--GGGTGGGS
T ss_pred --cCCCCcEEEEec--------------------CCCChHHHHHHHHccCCCCcEEEEeccccccccchh--HHHHHHHH
Confidence 256788888854 3456666666653 5788888887532111 1111 11111
Q ss_pred --hcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHh--cCCCCcEEEecCCCCCCHHHHHHHH---HHhcCCccE
Q 039096 221 --SKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGR--GCSKLVKFEVEGCKNITVDGLRTLA---SLLRETLVV 293 (554)
Q Consensus 221 --~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~--~~~~L~~L~L~~c~~i~~~~~~~l~---~~~~~~L~~ 293 (554)
..+| +|+.|++.+|. +++.+...++. .+++|++|+|+.|. +++.|...+. ..+ ++|+.
T Consensus 247 ~~~~~p------------~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l-~~L~~ 311 (362)
T 2ra8_A 247 SKDRFP------------NLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKI-KHLKF 311 (362)
T ss_dssp CTTTCT------------TCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHH-TTCSE
T ss_pred hcCCCC------------CcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccC-CcceE
Confidence 1233 44466666676 66655555543 36778888887766 7887766654 334 78888
Q ss_pred EEEeccCCCChhHHHHHHhhcCCCccEEEeee
Q 039096 294 IKIYCCENLGAVASCKALKPIRDRIQKLHIDC 325 (554)
Q Consensus 294 L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~ 325 (554)
|+++.|. + +......+...+ ..+++++.
T Consensus 312 L~L~~n~-i-~d~~~~~l~~al--g~~~~~~~ 339 (362)
T 2ra8_A 312 INMKYNY-L-SDEMKKELQKSL--PMKIDVSD 339 (362)
T ss_dssp EECCSBB-C-CHHHHHHHHHHC--CSEEECCS
T ss_pred EECCCCc-C-CHHHHHHHHHHc--CCEEEecC
Confidence 8887774 4 344454444322 34455533
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.53 E-value=1.1e-08 Score=93.85 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=52.4
Q ss_pred cCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCC
Q 039096 314 IRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTRE 393 (554)
Q Consensus 314 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~ 393 (554)
.+++|++|+++.+.+.......+ ..+++|++|+++++. ++.+....+..+++|+.|+++ ++
T Consensus 98 ~l~~L~~L~L~~N~l~~~~~~~~-----------~~l~~L~~L~l~~N~---l~~~~~~~~~~l~~L~~L~l~---~N-- 158 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLPDGVF-----------DKLTQLKDLRLYQNQ---LKSVPDGVFDRLTSLQYIWLH---DN-- 158 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTT-----------TTCTTCCEEECCSSC---CSCCCTTTTTTCTTCCEEECC---SC--
T ss_pred CccCCCEEEcCCCcCcccCHhHh-----------ccCCcCCEEECCCCc---cceeCHHHhccCCCccEEEec---CC--
Confidence 45667777776665444333334 567788888887654 666666556777888888886 44
Q ss_pred CCCCCccccchhhhhccCCCccceeeecCCcccccc
Q 039096 394 KPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQ 429 (554)
Q Consensus 394 ~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~ 429 (554)
+ + ...+++|+.|+++.+.+++...
T Consensus 159 -~-~----------~~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 159 -P-W----------DCTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp -C-B----------CCCTTTTHHHHHHHHHCTTTBB
T ss_pred -C-e----------ecCCCCHHHHHHHHHhCCceee
Confidence 1 1 1235677777777555555443
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.52 E-value=3.8e-08 Score=93.93 Aligned_cols=126 Identities=14% Similarity=0.066 Sum_probs=63.3
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCC
Q 039096 261 CSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGN 340 (554)
Q Consensus 261 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 340 (554)
+++|+.|++++|. +++... ...+ ++|++|++++|... .... +.. ++|++|+++.+.+... ..+
T Consensus 62 l~~L~~L~L~~N~-i~~~~~---l~~l-~~L~~L~L~~N~l~-~l~~---~~~--~~L~~L~L~~N~l~~~--~~l---- 124 (263)
T 1xeu_A 62 FTNLKELHLSHNQ-ISDLSP---LKDL-TKLEELSVNRNRLK-NLNG---IPS--ACLSRLFLDNNELRDT--DSL---- 124 (263)
T ss_dssp CTTCCEEECCSSC-CCCCGG---GTTC-SSCCEEECCSSCCS-CCTT---CCC--SSCCEEECCSSCCSBS--GGG----
T ss_pred CCCCCEEECCCCc-cCCChh---hccC-CCCCEEECCCCccC-CcCc---ccc--CcccEEEccCCccCCC--hhh----
Confidence 5555555555554 332111 1222 55555555555322 1111 111 5566666655543332 223
Q ss_pred ccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeee
Q 039096 341 TSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLD 420 (554)
Q Consensus 341 ~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~ 420 (554)
..+++|+.|+++++. ++++. .+..+++|+.|+++ +| .++ +. ..+..+++|+.|+++
T Consensus 125 -------~~l~~L~~L~Ls~N~---i~~~~--~l~~l~~L~~L~L~---~N----~i~---~~--~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 125 -------IHLKNLEILSIRNNK---LKSIV--MLGFLSKLEVLDLH---GN----EIT---NT--GGLTRLKKVNWIDLT 180 (263)
T ss_dssp -------TTCTTCCEEECTTSC---CCBCG--GGGGCTTCCEEECT---TS----CCC---BC--TTSTTCCCCCEEEEE
T ss_pred -------cCcccccEEECCCCc---CCCCh--HHccCCCCCEEECC---CC----cCc---ch--HHhccCCCCCEEeCC
Confidence 556677777776554 55542 35566677777775 44 232 11 345556677777776
Q ss_pred cCCcccc
Q 039096 421 FGDTDGH 427 (554)
Q Consensus 421 c~~~~~~ 427 (554)
.|.++..
T Consensus 181 ~N~~~~~ 187 (263)
T 1xeu_A 181 GQKCVNE 187 (263)
T ss_dssp EEEEECC
T ss_pred CCcccCC
Confidence 5555544
No 112
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.49 E-value=1.4e-07 Score=93.90 Aligned_cols=177 Identities=15% Similarity=0.044 Sum_probs=90.5
Q ss_pred hCCCCCcEEEecCCCCCCCchh------hHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 039096 193 SGLPLLEELALDVGKNVRDSGS------ASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVK 266 (554)
Q Consensus 193 ~~~~~L~~L~L~~c~~l~~~~~------~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~ 266 (554)
..+++|+.|.+.... ..+... .+..+...+|+|+.|.+.++.+ + . +. .+ ..++|++
T Consensus 136 ~~l~~L~~L~l~~~~-~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-l---~------l~-----~~--~~~~L~~ 197 (362)
T 2ra8_A 136 EKFAHFEGLFWGDID-FEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-L---S------IG-----KK--PRPNLKS 197 (362)
T ss_dssp HHHTTCSEEEECCCC-TTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-C---B------CC-----SC--BCTTCSE
T ss_pred hhcchhhheeecCcc-hhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-c---e------ec-----cc--cCCCCcE
Confidence 357899999995421 211000 1335557889999888766421 0 0 00 00 1456777
Q ss_pred EEecCCCCCCHHHHHHHHH-HhcCCccEEEEeccCCC--Ch--hHHHHHHh--hcCCCccEEEeeeeeccccchhhhccC
Q 039096 267 FEVEGCKNITVDGLRTLAS-LLRETLVVIKIYCCENL--GA--VASCKALK--PIRDRIQKLHIDCVWDGIRSSEAKATG 339 (554)
Q Consensus 267 L~L~~c~~i~~~~~~~l~~-~~~~~L~~L~l~~c~~~--~~--~~~l~~l~--~~~~~L~~L~l~~~~~~~~~~~~~~~~ 339 (554)
|+|..|. +++.++..+.. .+ |+|++|+|+.+.+. .. ...+..+. ..+|+|+.|.+..+.+++.....+
T Consensus 198 L~L~~~~-l~~~~l~~l~~~~l-p~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l--- 272 (362)
T 2ra8_A 198 LEIISGG-LPDSVVEDILGSDL-PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF--- 272 (362)
T ss_dssp EEEECSB-CCHHHHHHHHHSBC-TTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH---
T ss_pred EEEecCC-CChHHHHHHHHccC-CCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH---
Confidence 7776655 66666665553 24 66777766432110 00 11111111 235667777775554443333333
Q ss_pred CccchhhhhcCCCCceEEeecccCCccCcccc----ccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhcc
Q 039096 340 NTSTIFSKTRWKSLKELSFWIEVGELLTPLPV----AGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTR 410 (554)
Q Consensus 340 ~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~----~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~ 410 (554)
.....+++|++|+|+.+. +++... .++.++++|+.|+++ .| .++ +.++..+..
T Consensus 273 -----a~a~~~~~L~~LdLs~n~---L~d~G~~~L~~~L~~l~~L~~L~L~---~n----~i~---d~~~~~l~~ 329 (362)
T 2ra8_A 273 -----LESDILPQLETMDISAGV---LTDEGARLLLDHVDKIKHLKFINMK---YN----YLS---DEMKKELQK 329 (362)
T ss_dssp -----HHCSSGGGCSEEECCSSC---CBHHHHHHHHTTHHHHTTCSEEECC---SB----BCC---HHHHHHHHH
T ss_pred -----HhCccCCCCCEEECCCCC---CChHHHHHHHhhcccCCcceEEECC---CC----cCC---HHHHHHHHH
Confidence 111346677777775443 443221 122456777777776 44 455 666666655
No 113
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.47 E-value=4.8e-10 Score=112.02 Aligned_cols=224 Identities=16% Similarity=0.139 Sum_probs=109.8
Q ss_pred CCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHH
Q 039096 108 AILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEG 187 (554)
Q Consensus 108 ~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~ 187 (554)
+++++|+|++|.. + .+....+..+++|++|++++|...+.+ ..
T Consensus 30 ~~l~~L~Ls~N~i----~---------------~i~~~~f~~l~~L~~L~Ls~N~i~~~i----------------~~-- 72 (350)
T 4ay9_X 30 RNAIELRFVLTKL----R---------------VIQKGAFSGFGDLEKIEISQNDVLEVI----------------EA-- 72 (350)
T ss_dssp TTCSEEEEESCCC----S---------------EECTTSSTTCTTCCEEEEECCTTCCEE----------------CT--
T ss_pred CCCCEEEccCCcC----C---------------CcCHHHHcCCCCCCEEECcCCCCCCcc----------------Ch--
Confidence 6899999998862 1 111112346789999999876322111 00
Q ss_pred HHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 039096 188 LIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKF 267 (554)
Q Consensus 188 l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L 267 (554)
..+.++++++++.+..+++++...+. .+ ..+++|+.|+++++ . +.......+ ....++..|
T Consensus 73 --~~f~~L~~l~~~l~~~~N~l~~l~~~--~f-~~l~~L~~L~l~~n------------~-l~~~~~~~~-~~~~~l~~l 133 (350)
T 4ay9_X 73 --DVFSNLPKLHEIRIEKANNLLYINPE--AF-QNLPNLQYLLISNT------------G-IKHLPDVHK-IHSLQKVLL 133 (350)
T ss_dssp --TSBCSCTTCCEEEEEEETTCCEECTT--SB-CCCTTCCEEEEEEE------------C-CSSCCCCTT-CCBSSCEEE
T ss_pred --hHhhcchhhhhhhcccCCcccccCch--hh-hhcccccccccccc------------c-cccCCchhh-cccchhhhh
Confidence 11245677777655565667544321 33 55666665555443 2 111000000 013345566
Q ss_pred EecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEee-eeeccccchhhhccCCccchhh
Q 039096 268 EVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHID-CVWDGIRSSEAKATGNTSTIFS 346 (554)
Q Consensus 268 ~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~~~~~~ 346 (554)
++.++..++......+.. +...++.|+++++... .. ..-.....+|++|++. ++.++......+
T Consensus 134 ~l~~~~~i~~l~~~~f~~-~~~~l~~L~L~~N~i~-~i---~~~~f~~~~L~~l~l~~~n~l~~i~~~~f---------- 198 (350)
T 4ay9_X 134 DIQDNINIHTIERNSFVG-LSFESVILWLNKNGIQ-EI---HNSAFNGTQLDELNLSDNNNLEELPNDVF---------- 198 (350)
T ss_dssp EEESCTTCCEECTTSSTT-SBSSCEEEECCSSCCC-EE---CTTSSTTEEEEEEECTTCTTCCCCCTTTT----------
T ss_pred hhccccccccccccchhh-cchhhhhhcccccccc-CC---ChhhccccchhHHhhccCCcccCCCHHHh----------
Confidence 665544333111111111 1135666666665422 11 1111123457777773 444333333344
Q ss_pred hhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeee
Q 039096 347 KTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLD 420 (554)
Q Consensus 347 ~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~ 420 (554)
..+++|+.|+++++. ++.++... +.+|++|.+. ++.....++ .+..+++|+.+++.
T Consensus 199 -~~l~~L~~LdLs~N~---l~~lp~~~---~~~L~~L~~l---~~~~l~~lP--------~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 199 -HGASGPVILDISRTR---IHSLPSYG---LENLKKLRAR---STYNLKKLP--------TLEKLVALMEASLT 254 (350)
T ss_dssp -TTEECCSEEECTTSC---CCCCCSSS---CTTCCEEECT---TCTTCCCCC--------CTTTCCSCCEEECS
T ss_pred -ccCcccchhhcCCCC---cCccChhh---hccchHhhhc---cCCCcCcCC--------CchhCcChhhCcCC
Confidence 667788888886554 66665543 3456666655 441112222 34456677777665
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.46 E-value=3.7e-07 Score=78.69 Aligned_cols=109 Identities=23% Similarity=0.179 Sum_probs=63.6
Q ss_pred cCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCCCEE
Q 039096 77 HCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRLTLL 156 (554)
Q Consensus 77 ~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L~~L 156 (554)
.+++|++|++++| .+... ..+. .+++|++|++++|..... + ......+++|++|
T Consensus 40 ~l~~L~~L~l~~n-~l~~~--~~~~----~l~~L~~L~Ls~n~i~~~-----~--------------~~~~~~l~~L~~L 93 (149)
T 2je0_A 40 EFEELEFLSTINV-GLTSI--ANLP----KLNKLKKLELSDNRVSGG-----L--------------EVLAEKCPNLTHL 93 (149)
T ss_dssp TCTTCCEEECTTS-CCCCC--TTCC----CCTTCCEEECCSSCCCSC-----T--------------HHHHHHCTTCCEE
T ss_pred hcCCCcEEECcCC-CCCCc--hhhh----cCCCCCEEECCCCcccch-----H--------------HHHhhhCCCCCEE
Confidence 5677888888776 33332 2222 346888888887762211 1 1122247788888
Q ss_pred EecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecc
Q 039096 157 HLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLG 232 (554)
Q Consensus 157 ~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~ 232 (554)
++++| .+++.........+++|++|++++|. +++...........+++|+.|+++
T Consensus 94 ~ls~N--------------------~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGN--------------------KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTS--------------------CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCC--------------------cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 88764 34443322334577888888888854 655442111233678888877764
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.44 E-value=3.2e-08 Score=85.50 Aligned_cols=13 Identities=8% Similarity=-0.043 Sum_probs=7.0
Q ss_pred CCCCcEEEecCCC
Q 039096 261 CSKLVKFEVEGCK 273 (554)
Q Consensus 261 ~~~L~~L~L~~c~ 273 (554)
+++|+.|++++|.
T Consensus 41 l~~L~~L~l~~n~ 53 (149)
T 2je0_A 41 FEELEFLSTINVG 53 (149)
T ss_dssp CTTCCEEECTTSC
T ss_pred cCCCcEEECcCCC
Confidence 4555555555554
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.39 E-value=1.2e-06 Score=77.02 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=54.4
Q ss_pred CCCccEEEeeeeecc-ccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCC
Q 039096 315 RDRIQKLHIDCVWDG-IRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTRE 393 (554)
Q Consensus 315 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~ 393 (554)
.++|++|+++.+.+. ......+ ..+++|+.|++++|. ++.+ ..+..+++|+.|+++ +|+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~-----------~~l~~L~~L~l~~n~---l~~~--~~~~~l~~L~~L~Ls---~N~l 83 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLT-----------AEFVNLEFLSLINVG---LISV--SNLPKLPKLKKLELS---ENRI 83 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCC-----------GGGGGCCEEEEESSC---CCCC--SSCCCCSSCCEEEEE---SCCC
T ss_pred cccCCEEECCCCCCChhhHHHHH-----------HhCCCCCEEeCcCCC---CCCh--hhhccCCCCCEEECc---CCcC
Confidence 366788888666544 1222223 567888888887765 5555 556778888888887 6633
Q ss_pred CCCCCccccchhhhhccCCCccceeeecCCccc
Q 039096 394 KPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDG 426 (554)
Q Consensus 394 ~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~ 426 (554)
...++ ..+..+++|+.|+++.|.+++
T Consensus 84 ~~~~~-------~~~~~l~~L~~L~Ls~N~l~~ 109 (168)
T 2ell_A 84 FGGLD-------MLAEKLPNLTHLNLSGNKLKD 109 (168)
T ss_dssp CSCCC-------HHHHHCTTCCEEECBSSSCCS
T ss_pred chHHH-------HHHhhCCCCCEEeccCCccCc
Confidence 22122 233347888888888666654
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.37 E-value=1.5e-07 Score=89.80 Aligned_cols=142 Identities=16% Similarity=0.088 Sum_probs=97.7
Q ss_pred CCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCC
Q 039096 194 GLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCK 273 (554)
Q Consensus 194 ~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~ 273 (554)
.+++|++|++++| .+++.. .+ ..+++|+. |++++|. +++... ...+++|+.|++++|.
T Consensus 39 ~l~~L~~L~l~~n-~i~~l~----~l-~~l~~L~~------------L~L~~N~-i~~~~~---l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 39 ELSGVQNFNGDNS-NIQSLA----GM-QFFTNLKE------------LHLSHNQ-ISDLSP---LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHTTCSEEECTTS-CCCCCT----TG-GGCTTCCE------------EECCSSC-CCCCGG---GTTCSSCCEEECCSSC
T ss_pred hcCcCcEEECcCC-Ccccch----HH-hhCCCCCE------------EECCCCc-cCCChh---hccCCCCCEEECCCCc
Confidence 4689999999886 475432 34 56666665 5555554 443222 3448999999999987
Q ss_pred CCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCC
Q 039096 274 NITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSL 353 (554)
Q Consensus 274 ~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 353 (554)
+++. ..+. . ++|+.|++++|... ... . ...+++|++|+++.+.+... ..+ ..+++|
T Consensus 97 -l~~l--~~~~--~-~~L~~L~L~~N~l~-~~~---~-l~~l~~L~~L~Ls~N~i~~~--~~l-----------~~l~~L 152 (263)
T 1xeu_A 97 -LKNL--NGIP--S-ACLSRLFLDNNELR-DTD---S-LIHLKNLEILSIRNNKLKSI--VML-----------GFLSKL 152 (263)
T ss_dssp -CSCC--TTCC--C-SSCCEEECCSSCCS-BSG---G-GTTCTTCCEEECTTSCCCBC--GGG-----------GGCTTC
T ss_pred -cCCc--Cccc--c-CcccEEEccCCccC-CCh---h-hcCcccccEEECCCCcCCCC--hHH-----------ccCCCC
Confidence 5531 1111 1 68999999998644 322 2 34588999999987765543 245 678999
Q ss_pred ceEEeecccCCccCccccccCcCCCCCCEEEEe
Q 039096 354 KELSFWIEVGELLTPLPVAGLDECPILENIRIK 386 (554)
Q Consensus 354 ~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~ 386 (554)
+.|++++|. ++++ ..+..+++|+.|+++
T Consensus 153 ~~L~L~~N~---i~~~--~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 153 EVLDLHGNE---ITNT--GGLTRLKKVNWIDLT 180 (263)
T ss_dssp CEEECTTSC---CCBC--TTSTTCCCCCEEEEE
T ss_pred CEEECCCCc---Ccch--HHhccCCCCCEEeCC
Confidence 999998776 6666 557889999999998
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.36 E-value=4.3e-07 Score=83.98 Aligned_cols=110 Identities=13% Similarity=0.121 Sum_probs=59.8
Q ss_pred CCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCc
Q 039096 289 ETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTP 368 (554)
Q Consensus 289 ~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~ 368 (554)
++|+.|+++++... .... .....+++|++|+++.+.+.......+ ..+++|++|+++++. ++.
T Consensus 32 ~~l~~L~l~~n~i~-~i~~--~~~~~l~~L~~L~Ls~N~i~~~~~~~~-----------~~l~~L~~L~Ls~N~---l~~ 94 (220)
T 2v9t_B 32 ETITEIRLEQNTIK-VIPP--GAFSPYKKLRRIDLSNNQISELAPDAF-----------QGLRSLNSLVLYGNK---ITE 94 (220)
T ss_dssp TTCCEEECCSSCCC-EECT--TSSTTCTTCCEEECCSSCCCEECTTTT-----------TTCSSCCEEECCSSC---CCC
T ss_pred cCCCEEECCCCcCC-CcCH--hHhhCCCCCCEEECCCCcCCCcCHHHh-----------hCCcCCCEEECCCCc---CCc
Confidence 46777777665432 1110 112335667777776665444444444 566677777776544 555
Q ss_pred cccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCcc
Q 039096 369 LPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTD 425 (554)
Q Consensus 369 l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~ 425 (554)
++...+..+++|+.|+++ ++ .++ ......+..+++|+.|+++.|.++
T Consensus 95 l~~~~f~~l~~L~~L~L~---~N----~l~---~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 95 LPKSLFEGLFSLQLLLLN---AN----KIN---CLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp CCTTTTTTCTTCCEEECC---SS----CCC---CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCHhHccCCCCCCEEECC---CC----CCC---EeCHHHcCCCCCCCEEECCCCcCC
Confidence 555555666777777775 44 222 111234455666666666655444
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.35 E-value=1.1e-06 Score=80.40 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=25.3
Q ss_pred HHhccccceeeeccchhhHHHHhhhcCCCCCcccccccccccCCC
Q 039096 480 ISNCITLRKVFVHCTAREHFMSMLISPTPNPKKARDAQIKLDYYP 524 (554)
Q Consensus 480 l~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 524 (554)
+..+++|+.|++++... ...||+ |+.|+++.+.+.
T Consensus 144 ~~~l~~L~~L~l~~N~~-------~~~~~~---l~~L~~~~n~~~ 178 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDNPW-------DCTCPG---IRYLSEWINKHS 178 (208)
T ss_dssp TTTCTTCCEEECCSCCB-------CCCTTT---THHHHHHHHHCT
T ss_pred hccCCCccEEEecCCCe-------ecCCCC---HHHHHHHHHhCC
Confidence 45678899999997632 223788 999988876654
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.31 E-value=4.1e-06 Score=88.53 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=38.9
Q ss_pred CCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHHHHHhcCCCCcEEEecCCCCCCCChhHHHhhcC
Q 039096 25 DAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFVPLLKHCKCLTSVDLSSFYHWTEDLPPVLKAYP 104 (554)
Q Consensus 25 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~ 104 (554)
.+|+.|+++++ .+.. .. +.+ .++|+.|+++++.. . .+. ..+++|++|++++| .++. +|. ++
T Consensus 59 ~~L~~L~Ls~n-~L~~-lp--~~l---~~~L~~L~Ls~N~l-~--~ip---~~l~~L~~L~Ls~N-~l~~-ip~----l~ 119 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSS-LP--DNL---PPQITVLEITQNAL-I--SLP---ELPASLEYLDACDN-RLST-LPE----LP 119 (571)
T ss_dssp TTCSEEECCSS-CCSC-CC--SCC---CTTCSEEECCSSCC-S--CCC---CCCTTCCEEECCSS-CCSC-CCC----CC
T ss_pred CCccEEEeCCC-CCCc-cC--HhH---cCCCCEEECcCCCC-c--ccc---cccCCCCEEEccCC-CCCC-cch----hh
Confidence 36777777766 3332 11 222 25566776663321 1 111 34677777777776 3333 333 22
Q ss_pred cCCCCccEEEcCCCC
Q 039096 105 DKSAILTCLNLLKTS 119 (554)
Q Consensus 105 ~~~~~L~~L~L~~~~ 119 (554)
.+|++|++++|.
T Consensus 120 ---~~L~~L~Ls~N~ 131 (571)
T 3cvr_A 120 ---ASLKHLDVDNNQ 131 (571)
T ss_dssp ---TTCCEEECCSSC
T ss_pred ---cCCCEEECCCCc
Confidence 277777777765
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.27 E-value=1.8e-08 Score=106.94 Aligned_cols=126 Identities=13% Similarity=0.044 Sum_probs=86.0
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCc
Q 039096 262 SKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNT 341 (554)
Q Consensus 262 ~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 341 (554)
..|+.|++++|. ++. +.. ...+ ++|+.|++++|... . ++.....+++|+.|+++.+.++.. ..+
T Consensus 441 ~~L~~L~Ls~n~-l~~--lp~-~~~l-~~L~~L~Ls~N~l~-~---lp~~~~~l~~L~~L~Ls~N~l~~l--p~l----- 504 (567)
T 1dce_A 441 ADVRVLHLAHKD-LTV--LCH-LEQL-LLVTHLDLSHNRLR-A---LPPALAALRCLEVLQASDNALENV--DGV----- 504 (567)
T ss_dssp TTCSEEECTTSC-CSS--CCC-GGGG-TTCCEEECCSSCCC-C---CCGGGGGCTTCCEEECCSSCCCCC--GGG-----
T ss_pred cCceEEEecCCC-CCC--CcC-cccc-ccCcEeecCccccc-c---cchhhhcCCCCCEEECCCCCCCCC--ccc-----
Confidence 469999999987 553 233 3344 89999999988643 2 222334688999999988866542 255
Q ss_pred cchhhhhcCCCCceEEeecccCCccCccc-cccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceee
Q 039096 342 STIFSKTRWKSLKELSFWIEVGELLTPLP-VAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVL 419 (554)
Q Consensus 342 ~~~~~~~~~~~L~~L~l~~c~~~~~t~l~-~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l 419 (554)
..+++|+.|+++++. ++++. +..+..+++|+.|+++ ++.....+ ......+..+|+|+.|++
T Consensus 505 ------~~l~~L~~L~Ls~N~---l~~~~~p~~l~~l~~L~~L~L~---~N~l~~~~----~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 505 ------ANLPRLQELLLCNNR---LQQSAAIQPLVSCPRLVLLNLQ---GNSLCQEE----GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ------TTCSSCCEEECCSSC---CCSSSTTGGGGGCTTCCEEECT---TSGGGGSS----SCTTHHHHHCTTCSEEEC
T ss_pred ------CCCCCCcEEECCCCC---CCCCCCcHHHhcCCCCCEEEec---CCcCCCCc----cHHHHHHHHCcccCccCC
Confidence 789999999998765 77775 6678899999999998 55222111 111122333889988864
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=4.1e-07 Score=89.78 Aligned_cols=274 Identities=14% Similarity=0.128 Sum_probs=155.1
Q ss_pred CCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCC--CCCCHHHHHHHHHhCC--ChHhhHHHHhcc----
Q 039096 78 CKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFS--EDYRPQEIIEIIAARP--NLNKWAVSIATN---- 149 (554)
Q Consensus 78 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~i~~~~l~~l~~~~~--~L~~L~~~~~~~---- 149 (554)
.+++++|.+++.. ...-...+.. .+++|+.|+|++|... .+. ...+.. .... ....+....+..
T Consensus 24 ~~~l~~L~l~g~i--~~~~~~~l~~---~l~~L~~LdLs~n~i~~~~~~-~~~~~~--~~~~~~~~~~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKL--NAEDFRHLRD---EFPSLKVLDISNAEIKMYSGK-AGTYPN--GKFYIYMANFVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEE--CHHHHHHHHH---SCTTCCEEEEEEEEECCEEES-SSSSGG--GCCEEECTTEECTTTTEEEETT
T ss_pred hCceeEEEEeccc--cHHHHHHHHH---hhccCeEEecCcceeEEecCc-cccccc--cccccccccccCHHHhcccccc
Confidence 5688999998752 2211123333 1468999999988632 000 000000 0000 000111334446
Q ss_pred ----CCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCC
Q 039096 150 ----CPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVN 225 (554)
Q Consensus 150 ----~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~ 225 (554)
|++|++|++.+. ++ .|.+ ..+.+|++|++|++... .++..+. .++ ..|.+
T Consensus 96 ~~~g~~~L~~l~L~~~--i~----------------~I~~----~aF~~~~~L~~l~l~~n-~i~~i~~--~aF-~~~~~ 149 (329)
T 3sb4_A 96 VTKGKQTLEKVILSEK--IK----------------NIED----AAFKGCDNLKICQIRKK-TAPNLLP--EAL-ADSVT 149 (329)
T ss_dssp EEEECTTCCC-CBCTT--CC----------------EECT----TTTTTCTTCCEEEBCCS-SCCEECT--TSS-CTTTC
T ss_pred cccccCCCcEEECCcc--cc----------------chhH----HHhhcCcccceEEcCCC-Cccccch--hhh-cCCCc
Confidence 888888888541 11 1111 12357888999988763 3432221 133 45666
Q ss_pred CcEeeccccc----------------Cccc-EEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhc
Q 039096 226 LKGLKLGQLH----------------SWLE-SLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLR 288 (554)
Q Consensus 226 L~~L~l~~~~----------------~~L~-~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~ 288 (554)
+..+...... ..|+ .+.+.....+... +........+++.+.+.+. +....+..+...+
T Consensus 150 l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~- 225 (329)
T 3sb4_A 150 AIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDE-IMKAGLQPRDINFLTIEGK--LDNADFKLIRDYM- 225 (329)
T ss_dssp EEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHH-HHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHC-
T ss_pred eEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHH-HhhcccCccccceEEEeee--ecHHHHHHHHHhc-
Confidence 6666554310 0333 3444443322111 1111112456778877764 5666677666667
Q ss_pred CCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCc-eEEeecccCCccC
Q 039096 289 ETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLK-ELSFWIEVGELLT 367 (554)
Q Consensus 289 ~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~~~~t 367 (554)
++|+.|++.++... .... .....|++|+++++..+ +...+...+ .+|++|+ .+++.. . ++
T Consensus 226 ~~L~~l~L~~n~i~-~I~~--~aF~~~~~L~~l~l~~n-i~~I~~~aF-----------~~~~~L~~~l~l~~--~--l~ 286 (329)
T 3sb4_A 226 PNLVSLDISKTNAT-TIPD--FTFAQKKYLLKIKLPHN-LKTIGQRVF-----------SNCGRLAGTLELPA--S--VT 286 (329)
T ss_dssp TTCCEEECTTBCCC-EECT--TTTTTCTTCCEEECCTT-CCEECTTTT-----------TTCTTCCEEEEECT--T--CC
T ss_pred CCCeEEECCCCCcc-eecH--hhhhCCCCCCEEECCcc-cceehHHHh-----------hCChhccEEEEEcc--c--ce
Confidence 89999999876422 2111 12346899999999655 344444445 7899999 999964 3 77
Q ss_pred ccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCcccee
Q 039096 368 PLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLV 418 (554)
Q Consensus 368 ~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~ 418 (554)
.+....+.+|++|+.+++. . +.++ ..+-..|..+++|+.+.
T Consensus 287 ~I~~~aF~~c~~L~~l~l~---~----n~i~---~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 287 AIEFGAFMGCDNLRYVLAT---G----DKIT---TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECTTTTTTCTTEEEEEEC---S----SCCC---EECTTTTCTTCCCCEEE
T ss_pred EEchhhhhCCccCCEEEeC---C----CccC---ccchhhhcCCcchhhhc
Confidence 8888888999999999995 2 3555 44445677788888775
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.25 E-value=3.1e-07 Score=85.01 Aligned_cols=88 Identities=11% Similarity=0.012 Sum_probs=51.5
Q ss_pred cCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCC
Q 039096 314 IRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTRE 393 (554)
Q Consensus 314 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~ 393 (554)
.+++|++|+++.+.+.......+ ..+++|++|+++++. ++.+....+..+++|+.|+++ ++
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~~~~-----------~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~---~N-- 139 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQHKMF-----------KGLESLKTLMLRSNR---ITCVGNDSFIGLSSVRLLSLY---DN-- 139 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCGGGG-----------TTCSSCCEEECTTSC---CCCBCTTSSTTCTTCSEEECT---TS--
T ss_pred CCCCCCEEECCCCccCccCHhHh-----------cCCcCCCEEECCCCc---CCeECHhHcCCCccCCEEECC---CC--
Confidence 35667777776665444444444 566777777776554 566655656667777777776 44
Q ss_pred CCCCCccccchhhhhccCCCccceeeecCCcc
Q 039096 394 KPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTD 425 (554)
Q Consensus 394 ~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~ 425 (554)
.++ ......+..+++|+.|+++.|.++
T Consensus 140 --~l~---~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 140 --QIT---TVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp --CCC---CBCTTTTTTCTTCCEEECCSCCEE
T ss_pred --cCC---EECHHHhcCCCCCCEEEecCcCCc
Confidence 222 111234555677777777755544
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.24 E-value=1.6e-06 Score=80.61 Aligned_cols=109 Identities=16% Similarity=0.081 Sum_probs=53.9
Q ss_pred CCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCc
Q 039096 289 ETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTP 368 (554)
Q Consensus 289 ~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~ 368 (554)
++|++|+++++...... ......+++|++|+++.+.+.......+ ..+++|+.|+++++. ++.
T Consensus 40 ~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~L~~N~l~~i~~~~~-----------~~l~~L~~L~Ls~N~---l~~ 102 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLE---PGVFDSLINLKELYLGSNQLGALPVGVF-----------DSLTQLTVLDLGTNQ---LTV 102 (229)
T ss_dssp TTCSEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCCCCCCTTTT-----------TTCTTCCEEECCSSC---CCC
T ss_pred CCCCEEEcCCCccCccC---HHHhhCccCCcEEECCCCCCCCcChhhc-----------ccCCCcCEEECCCCc---CCc
Confidence 56666666665433110 0112235566666665554433333333 456666666665543 555
Q ss_pred cccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCcc
Q 039096 369 LPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTD 425 (554)
Q Consensus 369 l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~ 425 (554)
+....+..+++|+.|+++ +++.. .+. ..+..+++|+.|+++.|.++
T Consensus 103 l~~~~~~~l~~L~~L~Ls---~N~l~-~lp-------~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 103 LPSAVFDRLVHLKELFMC---CNKLT-ELP-------RGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CCTTTTTTCTTCCEEECC---SSCCC-SCC-------TTGGGCTTCSEEECCSSCCC
T ss_pred cChhHhCcchhhCeEecc---CCccc-ccC-------cccccCCCCCEEECCCCcCC
Confidence 555445566666666665 33221 111 12344566666666544443
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.24 E-value=1e-06 Score=93.19 Aligned_cols=175 Identities=17% Similarity=0.146 Sum_probs=105.2
Q ss_pred CCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeeccccc--------CcccEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 039096 195 LPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLH--------SWLESLSIKNCGDLSDMSLVAIGRGCSKLVK 266 (554)
Q Consensus 195 ~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~--------~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~ 266 (554)
+.+|+.|+++++ ++++... .-.++|+.|+++++. .+|+.|++++|. ++. +..+ ..+|+.
T Consensus 58 ~~~L~~L~Ls~n-~L~~lp~------~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~-l~~--ip~l---~~~L~~ 124 (571)
T 3cvr_A 58 INQFSELQLNRL-NLSSLPD------NLPPQITVLEITQNALISLPELPASLEYLDACDNR-LST--LPEL---PASLKH 124 (571)
T ss_dssp HTTCSEEECCSS-CCSCCCS------CCCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSC--CCCC---CTTCCE
T ss_pred cCCccEEEeCCC-CCCccCH------hHcCCCCEEECcCCCCcccccccCCCCEEEccCCC-CCC--cchh---hcCCCE
Confidence 358999999875 4655321 124678888887653 277788888776 544 1111 237888
Q ss_pred EEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhh
Q 039096 267 FEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFS 346 (554)
Q Consensus 267 L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 346 (554)
|++++|. ++. +.. .+ ++|+.|++++|... .. + ..+++|++|+++.+.++.... +
T Consensus 125 L~Ls~N~-l~~--lp~---~l-~~L~~L~Ls~N~l~-~l---p---~~l~~L~~L~Ls~N~L~~lp~--l---------- 178 (571)
T 3cvr_A 125 LDVDNNQ-LTM--LPE---LP-ALLEYINADNNQLT-ML---P---ELPTSLEVLSVRNNQLTFLPE--L---------- 178 (571)
T ss_dssp EECCSSC-CSC--CCC---CC-TTCCEEECCSSCCS-CC---C---CCCTTCCEEECCSSCCSCCCC--C----------
T ss_pred EECCCCc-CCC--CCC---cC-ccccEEeCCCCccC-cC---C---CcCCCcCEEECCCCCCCCcch--h----------
Confidence 8888876 443 222 23 67888888777533 21 1 145778888887765444221 4
Q ss_pred hhcCCCCceEEeecccCCccCccccccCcCCCCC-------CEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceee
Q 039096 347 KTRWKSLKELSFWIEVGELLTPLPVAGLDECPIL-------ENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVL 419 (554)
Q Consensus 347 ~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L-------~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l 419 (554)
. ++|+.|++++|. ++.++. +.. +| +.|+++ +|.... ++ ..+..+++|+.|++
T Consensus 179 -~--~~L~~L~Ls~N~---L~~lp~--~~~--~L~~~~~~L~~L~Ls---~N~l~~-lp-------~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 179 -P--ESLEALDVSTNL---LESLPA--VPV--RNHHSEETEIFFRCR---ENRITH-IP-------ENILSLDPTCTIIL 237 (571)
T ss_dssp -C--TTCCEEECCSSC---CSSCCC--CC----------CCEEEECC---SSCCCC-CC-------GGGGGSCTTEEEEC
T ss_pred -h--CCCCEEECcCCC---CCchhh--HHH--hhhcccccceEEecC---CCccee-cC-------HHHhcCCCCCEEEe
Confidence 2 788888887665 555544 322 55 888887 553221 22 23455788888888
Q ss_pred ecCCcccccc
Q 039096 420 DFGDTDGHNQ 429 (554)
Q Consensus 420 ~c~~~~~~~~ 429 (554)
+.|.+++..+
T Consensus 238 ~~N~l~~~~p 247 (571)
T 3cvr_A 238 EDNPLSSRIR 247 (571)
T ss_dssp CSSSCCHHHH
T ss_pred eCCcCCCcCH
Confidence 8777776543
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.23 E-value=5e-07 Score=80.35 Aligned_cols=134 Identities=17% Similarity=0.154 Sum_probs=75.0
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCC
Q 039096 261 CSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGN 340 (554)
Q Consensus 261 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 340 (554)
+++|++|++++|. ++. +..+.... ++|+.|++++|... .. .....+++|++|+++.+.+.......+
T Consensus 18 ~~~L~~L~l~~n~-l~~--i~~~~~~~-~~L~~L~Ls~N~l~-~~----~~l~~l~~L~~L~Ls~N~l~~~~~~~~---- 84 (176)
T 1a9n_A 18 AVRDRELDLRGYK-IPV--IENLGATL-DQFDAIDFSDNEIR-KL----DGFPLLRRLKTLLVNNNRICRIGEGLD---- 84 (176)
T ss_dssp TTSCEEEECTTSC-CCS--CCCGGGGT-TCCSEEECCSSCCC-EE----CCCCCCSSCCEEECCSSCCCEECSCHH----
T ss_pred cCCceEEEeeCCC-Cch--hHHhhhcC-CCCCEEECCCCCCC-cc----cccccCCCCCEEECCCCcccccCcchh----
Confidence 4556666666654 331 11122221 36666666665422 21 112346778888887776554333333
Q ss_pred ccchhhhhcCCCCceEEeecccCCccCcccc-ccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceee
Q 039096 341 TSTIFSKTRWKSLKELSFWIEVGELLTPLPV-AGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVL 419 (554)
Q Consensus 341 ~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~-~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l 419 (554)
..+++|++|+++++. ++.++. ..+..+++|+.|+++ ++ .+..........+..+++|+.|++
T Consensus 85 -------~~l~~L~~L~L~~N~---i~~~~~~~~l~~l~~L~~L~l~---~N----~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 85 -------QALPDLTELILTNNS---LVELGDLDPLASLKSLTYLCIL---RN----PVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp -------HHCTTCCEEECCSCC---CCCGGGGGGGGGCTTCCEEECC---SS----GGGGSTTHHHHHHHHCTTCSEETT
T ss_pred -------hcCCCCCEEECCCCc---CCcchhhHhhhcCCCCCEEEec---CC----CCCCcHhHHHHHHHHCCccceeCC
Confidence 567888888887665 555554 346778888888887 55 222111211223556888888888
Q ss_pred ecCCc
Q 039096 420 DFGDT 424 (554)
Q Consensus 420 ~c~~~ 424 (554)
+.+..
T Consensus 148 ~~n~~ 152 (176)
T 1a9n_A 148 QKVKL 152 (176)
T ss_dssp EECCH
T ss_pred CcCCH
Confidence 84443
No 127
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.22 E-value=1e-05 Score=72.34 Aligned_cols=131 Identities=18% Similarity=0.125 Sum_probs=95.2
Q ss_pred HHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhc---C
Q 039096 185 EEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRG---C 261 (554)
Q Consensus 185 ~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~---~ 261 (554)
++.+..+...-+.|++|+|++++.+++.+ ...++..+.. ...|+.|+|++|. +++.+..+++.. -
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~g--a~~la~aL~~---------N~~L~~L~L~~n~-igd~ga~alA~aL~~N 97 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKER--IRSLIEAACN---------SKHIEKFSLANTA-ISDSEARGLIELIETS 97 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHH--HHHHHHHHTT---------CSCCCEEECTTSC-CBHHHHTTHHHHHHHC
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHH--HHHHHHHHhh---------CCCcCEEEccCCC-CChHHHHHHHHHHhcC
Confidence 35667777777899999998765788877 4455543321 1256688899888 899887766543 4
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHHHhc--CCccEEEEeccC--CCChh--HHHHHHhhcCCCccEEEeeeeec
Q 039096 262 SKLVKFEVEGCKNITVDGLRTLASLLR--ETLVVIKIYCCE--NLGAV--ASCKALKPIRDRIQKLHIDCVWD 328 (554)
Q Consensus 262 ~~L~~L~L~~c~~i~~~~~~~l~~~~~--~~L~~L~l~~c~--~~~~~--~~l~~l~~~~~~L~~L~l~~~~~ 328 (554)
+.|++|+|++|. |++.|...+...+. +.|++|+++++. .++.. ..+.......+.|++|+++.+.+
T Consensus 98 ~tL~~L~L~~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 98 PSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp SSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CccCeEecCCCc-CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 789999999998 99999999988763 579999998764 34332 23444555678899999976543
No 128
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.21 E-value=1.3e-06 Score=80.71 Aligned_cols=82 Identities=7% Similarity=-0.003 Sum_probs=40.0
Q ss_pred CCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCc
Q 039096 289 ETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTP 368 (554)
Q Consensus 289 ~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~ 368 (554)
+.+++|+++++... .... ......+++|++|+++.+.+.......+ ..+++|++|+++++. ++.
T Consensus 32 ~~~~~L~L~~N~l~-~~~~-~~~~~~l~~L~~L~L~~N~i~~i~~~~~-----------~~l~~L~~L~Ls~N~---l~~ 95 (220)
T 2v70_A 32 QYTAELRLNNNEFT-VLEA-TGIFKKLPQLRKINFSNNKITDIEEGAF-----------EGASGVNEILLTSNR---LEN 95 (220)
T ss_dssp TTCSEEECCSSCCC-EECC-CCCGGGCTTCCEEECCSSCCCEECTTTT-----------TTCTTCCEEECCSSC---CCC
T ss_pred CCCCEEEcCCCcCC-ccCc-hhhhccCCCCCEEECCCCcCCEECHHHh-----------CCCCCCCEEECCCCc---cCc
Confidence 45566666665422 1100 0112235556666665554443333333 455666666665443 455
Q ss_pred cccccCcCCCCCCEEEEe
Q 039096 369 LPVAGLDECPILENIRIK 386 (554)
Q Consensus 369 l~~~~l~~~~~L~~L~l~ 386 (554)
+....+..+++|++|+++
T Consensus 96 ~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 96 VQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CCGGGGTTCSSCCEEECT
T ss_pred cCHhHhcCCcCCCEEECC
Confidence 555445556666666665
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.20 E-value=1.4e-07 Score=94.53 Aligned_cols=88 Identities=16% Similarity=0.156 Sum_probs=49.2
Q ss_pred cCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccC---cCCCCCCEEEEeeeCC
Q 039096 314 IRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGL---DECPILENIRIKMEGD 390 (554)
Q Consensus 314 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l---~~~~~L~~L~l~~~~~ 390 (554)
.+++|++|+++.+.+.......+ ..+++|+.|+++++. ++.++...+ ..+++|+.|+++ +
T Consensus 110 ~l~~L~~L~L~~N~i~~~~~~~~-----------~~l~~L~~L~L~~N~---l~~l~~~~~~~~~~l~~L~~L~L~---~ 172 (361)
T 2xot_A 110 DLQALEVLLLYNNHIVVVDRNAF-----------EDMAQLQKLYLSQNQ---ISRFPVELIKDGNKLPKLMLLDLS---S 172 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTT-----------TTCTTCCEEECCSSC---CCSCCGGGTC----CTTCCEEECC---S
T ss_pred CCcCCCEEECCCCcccEECHHHh-----------CCcccCCEEECCCCc---CCeeCHHHhcCcccCCcCCEEECC---C
Confidence 35667777776665544444444 567777777776554 566555544 457777777776 4
Q ss_pred CCCCCCCCccccchhhhhccCCC--ccceeeecCCcc
Q 039096 391 TREKPLLRDDKAWGLSCLTRYPR--LSKLVLDFGDTD 425 (554)
Q Consensus 391 c~~~~~l~~~~~~~l~~l~~~~~--L~~L~l~c~~~~ 425 (554)
+ .++ ......+..++. ++.|+++.|.+.
T Consensus 173 N----~l~---~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 173 N----KLK---KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp S----CCC---CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred C----CCC---ccCHHHhhhccHhhcceEEecCCCcc
Confidence 4 333 222233444554 366666655443
No 130
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.15 E-value=2.4e-06 Score=78.93 Aligned_cols=135 Identities=13% Similarity=-0.012 Sum_probs=95.7
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCC
Q 039096 261 CSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGN 340 (554)
Q Consensus 261 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 340 (554)
.++|+.|++++|. ++...... ...+ ++|++|+++++... ... ......+++|++|+++.+.+.......+
T Consensus 31 ~~~l~~L~l~~n~-i~~i~~~~-~~~l-~~L~~L~Ls~N~i~-~~~--~~~~~~l~~L~~L~Ls~N~l~~l~~~~f---- 100 (220)
T 2v9t_B 31 PETITEIRLEQNT-IKVIPPGA-FSPY-KKLRRIDLSNNQIS-ELA--PDAFQGLRSLNSLVLYGNKITELPKSLF---- 100 (220)
T ss_dssp CTTCCEEECCSSC-CCEECTTS-STTC-TTCCEEECCSSCCC-EEC--TTTTTTCSSCCEEECCSSCCCCCCTTTT----
T ss_pred CcCCCEEECCCCc-CCCcCHhH-hhCC-CCCCEEECCCCcCC-CcC--HHHhhCCcCCCEEECCCCcCCccCHhHc----
Confidence 3689999999987 55321111 1233 79999999998643 210 1123457899999998887665444444
Q ss_pred ccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeee
Q 039096 341 TSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLD 420 (554)
Q Consensus 341 ~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~ 420 (554)
..+++|++|+++++. ++.+....+..+++|+.|+++ ++ .++ ......+..+++|+.|+++
T Consensus 101 -------~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~---~N----~l~---~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 101 -------EGLFSLQLLLLNANK---INCLRVDAFQDLHNLNLLSLY---DN----KLQ---TIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp -------TTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECC---SS----CCS---CCCTTTTTTCTTCCEEECC
T ss_pred -------cCCCCCCEEECCCCC---CCEeCHHHcCCCCCCCEEECC---CC----cCC---EECHHHHhCCCCCCEEEeC
Confidence 789999999998766 788877888999999999998 55 333 2222346678999999998
Q ss_pred cCCcc
Q 039096 421 FGDTD 425 (554)
Q Consensus 421 c~~~~ 425 (554)
.|.+.
T Consensus 161 ~N~~~ 165 (220)
T 2v9t_B 161 QNPFI 165 (220)
T ss_dssp SSCEE
T ss_pred CCCcC
Confidence 76554
No 131
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.15 E-value=4e-06 Score=77.90 Aligned_cols=134 Identities=17% Similarity=0.103 Sum_probs=93.2
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCC
Q 039096 261 CSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGN 340 (554)
Q Consensus 261 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 340 (554)
.++|+.|++++|. ++..... ....+ ++|++|+++++... .... .....+++|++|+++.+.+.......+
T Consensus 39 ~~~L~~L~Ls~n~-i~~~~~~-~~~~l-~~L~~L~L~~N~l~-~i~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~---- 108 (229)
T 3e6j_A 39 PTNAQILYLHDNQ-ITKLEPG-VFDSL-INLKELYLGSNQLG-ALPV--GVFDSLTQLTVLDLGTNQLTVLPSAVF---- 108 (229)
T ss_dssp CTTCSEEECCSSC-CCCCCTT-TTTTC-TTCCEEECCSSCCC-CCCT--TTTTTCTTCCEEECCSSCCCCCCTTTT----
T ss_pred CCCCCEEEcCCCc-cCccCHH-HhhCc-cCCcEEECCCCCCC-CcCh--hhcccCCCcCEEECCCCcCCccChhHh----
Confidence 4789999999988 5532111 12234 89999999998643 2111 122457899999998887665554445
Q ss_pred ccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeee
Q 039096 341 TSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLD 420 (554)
Q Consensus 341 ~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~ 420 (554)
..+++|++|+++++. ++.++ ..+..+++|+.|+++ ++ .++ ......+..+++|+.|+++
T Consensus 109 -------~~l~~L~~L~Ls~N~---l~~lp-~~~~~l~~L~~L~L~---~N----~l~---~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 109 -------DRLVHLKELFMCCNK---LTELP-RGIERLTHLTHLALD---QN----QLK---SIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp -------TTCTTCCEEECCSSC---CCSCC-TTGGGCTTCSEEECC---SS----CCC---CCCTTTTTTCTTCCEEECT
T ss_pred -------CcchhhCeEeccCCc---ccccC-cccccCCCCCEEECC---CC----cCC---ccCHHHHhCCCCCCEEEee
Confidence 689999999998765 66554 346889999999998 55 333 2212346668999999998
Q ss_pred cCCcc
Q 039096 421 FGDTD 425 (554)
Q Consensus 421 c~~~~ 425 (554)
.|.++
T Consensus 168 ~N~~~ 172 (229)
T 3e6j_A 168 GNPWD 172 (229)
T ss_dssp TSCBC
T ss_pred CCCcc
Confidence 66554
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.13 E-value=2.6e-07 Score=97.96 Aligned_cols=107 Identities=15% Similarity=0.088 Sum_probs=62.9
Q ss_pred CCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCc
Q 039096 289 ETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTP 368 (554)
Q Consensus 289 ~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~ 368 (554)
..|+.|++++|... .. +. ...+++|+.|+++.+.+. ..+..+ ..+++|+.|+++++. +++
T Consensus 441 ~~L~~L~Ls~n~l~-~l---p~-~~~l~~L~~L~Ls~N~l~-~lp~~~-----------~~l~~L~~L~Ls~N~---l~~ 500 (567)
T 1dce_A 441 ADVRVLHLAHKDLT-VL---CH-LEQLLLVTHLDLSHNRLR-ALPPAL-----------AALRCLEVLQASDNA---LEN 500 (567)
T ss_dssp TTCSEEECTTSCCS-SC---CC-GGGGTTCCEEECCSSCCC-CCCGGG-----------GGCTTCCEEECCSSC---CCC
T ss_pred cCceEEEecCCCCC-CC---cC-ccccccCcEeecCccccc-ccchhh-----------hcCCCCCEEECCCCC---CCC
Confidence 46777777776433 21 12 234666777777666544 223344 567777777776554 555
Q ss_pred cccccCcCCCCCCEEEEeeeCCCCCCCCCCccccch-hhhhccCCCccceeeecCCcccc
Q 039096 369 LPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWG-LSCLTRYPRLSKLVLDFGDTDGH 427 (554)
Q Consensus 369 l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~-l~~l~~~~~L~~L~l~c~~~~~~ 427 (554)
++ .+..+++|+.|+++ ++ .++ ... ...+..+++|+.|+++.|.+++.
T Consensus 501 lp--~l~~l~~L~~L~Ls---~N----~l~---~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 501 VD--GVANLPRLQELLLC---NN----RLQ---QSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CG--GGTTCSSCCEEECC---SS----CCC---SSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred Cc--ccCCCCCCcEEECC---CC----CCC---CCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 54 56777777777776 44 222 111 23556677777777776655543
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.12 E-value=1.4e-06 Score=86.63 Aligned_cols=162 Identities=14% Similarity=-0.003 Sum_probs=78.3
Q ss_pred cccEEEecCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCC
Q 039096 237 WLESLSIKNCGDLSDMSLVAIGRGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRD 316 (554)
Q Consensus 237 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~ 316 (554)
++++|++++|. ++.....++ .++++|++|+|++|...+... ......+ ++++++.+.++..+.... ......++
T Consensus 31 ~l~~L~Ls~N~-i~~i~~~~f-~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L-~~l~~~l~~~~N~l~~l~--~~~f~~l~ 104 (350)
T 4ay9_X 31 NAIELRFVLTK-LRVIQKGAF-SGFGDLEKIEISQNDVLEVIE-ADVFSNL-PKLHEIRIEKANNLLYIN--PEAFQNLP 104 (350)
T ss_dssp TCSEEEEESCC-CSEECTTSS-TTCTTCCEEEEECCTTCCEEC-TTSBCSC-TTCCEEEEEEETTCCEEC--TTSBCCCT
T ss_pred CCCEEEccCCc-CCCcCHHHH-cCCCCCCEEECcCCCCCCccC-hhHhhcc-hhhhhhhcccCCcccccC--chhhhhcc
Confidence 34456666654 443221222 237788888888776322100 0001122 455655555544443221 11223466
Q ss_pred CccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCC-CCCEEEEeeeCCCCCCC
Q 039096 317 RIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECP-ILENIRIKMEGDTREKP 395 (554)
Q Consensus 317 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~-~L~~L~l~~~~~c~~~~ 395 (554)
+|++|+++.+.+........ ....++..|++..+.. ++.+....+..++ .++.|+++ ++
T Consensus 105 ~L~~L~l~~n~l~~~~~~~~-----------~~~~~l~~l~l~~~~~--i~~l~~~~f~~~~~~l~~L~L~---~N---- 164 (350)
T 4ay9_X 105 NLQYLLISNTGIKHLPDVHK-----------IHSLQKVLLDIQDNIN--IHTIERNSFVGLSFESVILWLN---KN---- 164 (350)
T ss_dssp TCCEEEEEEECCSSCCCCTT-----------CCBSSCEEEEEESCTT--CCEECTTSSTTSBSSCEEEECC---SS----
T ss_pred ccccccccccccccCCchhh-----------cccchhhhhhhccccc--cccccccchhhcchhhhhhccc---cc----
Confidence 77777776665443332222 3445566666654443 5555555454443 56677775 33
Q ss_pred CCCccccchhhhhccCCCccceeee-cCCccccc
Q 039096 396 LLRDDKAWGLSCLTRYPRLSKLVLD-FGDTDGHN 428 (554)
Q Consensus 396 ~l~~~~~~~l~~l~~~~~L~~L~l~-c~~~~~~~ 428 (554)
.++ ... ..+...++|+.|.+. ++.++...
T Consensus 165 ~i~---~i~-~~~f~~~~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 165 GIQ---EIH-NSAFNGTQLDELNLSDNNNLEELP 194 (350)
T ss_dssp CCC---EEC-TTSSTTEEEEEEECTTCTTCCCCC
T ss_pred ccc---CCC-hhhccccchhHHhhccCCcccCCC
Confidence 232 100 112234567777776 66666544
No 134
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.03 E-value=4.2e-06 Score=83.60 Aligned_cols=133 Identities=12% Similarity=0.043 Sum_probs=92.3
Q ss_pred cEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccch
Q 039096 265 VKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTI 344 (554)
Q Consensus 265 ~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 344 (554)
+.++.+++. ++. +...+++.++.|+++++... ... ...+...+++|++|+++.+.+.......+
T Consensus 21 ~~l~c~~~~-l~~-----iP~~~~~~l~~L~Ls~N~l~-~l~-~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-------- 84 (361)
T 2xot_A 21 NILSCSKQQ-LPN-----VPQSLPSYTALLDLSHNNLS-RLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAF-------- 84 (361)
T ss_dssp TEEECCSSC-CSS-----CCSSCCTTCSEEECCSSCCC-EEC-TTSSSSCCTTCCEEECCSSCCCEECTTTT--------
T ss_pred CEEEeCCCC-cCc-----cCccCCCCCCEEECCCCCCC-ccC-hhhhhhcccccCEEECCCCcCCccChhhc--------
Confidence 456666554 331 11122367999999998543 221 11122267899999998887665555555
Q ss_pred hhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCc
Q 039096 345 FSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDT 424 (554)
Q Consensus 345 ~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~ 424 (554)
..+++|++|+++++. ++.+....+..+++|+.|+++ ++ .+. ......+..+++|+.|+|+.|.+
T Consensus 85 ---~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~---~N----~i~---~~~~~~~~~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 85 ---VPVPNLRYLDLSSNH---LHTLDEFLFSDLQALEVLLLY---NN----HIV---VVDRNAFEDMAQLQKLYLSQNQI 148 (361)
T ss_dssp ---TTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC---SS----CCC---EECTTTTTTCTTCCEEECCSSCC
T ss_pred ---cCCCCCCEEECCCCc---CCcCCHHHhCCCcCCCEEECC---CC----ccc---EECHHHhCCcccCCEEECCCCcC
Confidence 789999999998765 777777778899999999998 55 344 33334577799999999998888
Q ss_pred ccccc
Q 039096 425 DGHNQ 429 (554)
Q Consensus 425 ~~~~~ 429 (554)
+....
T Consensus 149 ~~l~~ 153 (361)
T 2xot_A 149 SRFPV 153 (361)
T ss_dssp CSCCG
T ss_pred CeeCH
Confidence 76543
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.01 E-value=1.9e-06 Score=78.11 Aligned_cols=107 Identities=21% Similarity=0.210 Sum_probs=56.5
Q ss_pred HHhcCCCCcEEEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCCC
Q 039096 74 LLKHCKCLTSVDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPRL 153 (554)
Q Consensus 74 ~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~L 153 (554)
.+..+++|++|++++| .+.. +| .+..+ ++|++|++++|... . .+.. ...+++|
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~-l~-~~~~l----~~L~~L~l~~n~l~-~------------l~~~-------~~~~~~L 95 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEK-IS-SLSGM----ENLRILSLGRNLIK-K------------IENL-------DAVADTL 95 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESC-CC-CHHHH----TTCCEEEEEEEEEC-S------------CSSH-------HHHHHHC
T ss_pred HHhcCCCCCEEECCCC-CCcc-cc-ccccC----CCCCEEECCCCCcc-c------------ccch-------hhcCCcC
Confidence 4556777777777776 2232 34 45555 47777777776521 1 1111 1134667
Q ss_pred CEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeeccc
Q 039096 154 TLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQ 233 (554)
Q Consensus 154 ~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~ 233 (554)
+.|++++| .++. +.. ...+++|++|+++++ .+++.+. +..+ ..+++|+.|++++
T Consensus 96 ~~L~L~~N--------------------~l~~--l~~-~~~l~~L~~L~l~~N-~i~~~~~-~~~l-~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 96 EELWISYN--------------------QIAS--LSG-IEKLVNLRVLYMSNN-KITNWGE-IDKL-AALDKLEDLLLAG 149 (198)
T ss_dssp SEEEEEEE--------------------ECCC--HHH-HHHHHHSSEEEESEE-ECCCHHH-HHHH-TTTTTCSEEEECS
T ss_pred CEEECcCC--------------------cCCc--CCc-cccCCCCCEEECCCC-cCCchhH-HHHH-hcCCCCCEEEecC
Confidence 77777664 2222 112 234567777777764 3654321 2234 5566666544433
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.99 E-value=3.4e-06 Score=74.83 Aligned_cols=110 Identities=11% Similarity=0.003 Sum_probs=79.2
Q ss_pred CCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCc
Q 039096 289 ETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTP 368 (554)
Q Consensus 289 ~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~ 368 (554)
++|++|++++|... .. ..+....++|++|+++.+.+... ..+ ..+++|++|+++++. ++.
T Consensus 19 ~~L~~L~l~~n~l~-~i---~~~~~~~~~L~~L~Ls~N~l~~~--~~l-----------~~l~~L~~L~Ls~N~---l~~ 78 (176)
T 1a9n_A 19 VRDRELDLRGYKIP-VI---ENLGATLDQFDAIDFSDNEIRKL--DGF-----------PLLRRLKTLLVNNNR---ICR 78 (176)
T ss_dssp TSCEEEECTTSCCC-SC---CCGGGGTTCCSEEECCSSCCCEE--CCC-----------CCCSSCCEEECCSSC---CCE
T ss_pred CCceEEEeeCCCCc-hh---HHhhhcCCCCCEEECCCCCCCcc--ccc-----------ccCCCCCEEECCCCc---ccc
Confidence 68999999998543 22 23444456899999988765543 445 789999999998776 777
Q ss_pred cccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCcccc
Q 039096 369 LPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGH 427 (554)
Q Consensus 369 l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~ 427 (554)
++...+..+++|+.|+++ ++ .++. ...+..+..+++|+.|+++.|.++..
T Consensus 79 ~~~~~~~~l~~L~~L~L~---~N----~i~~--~~~~~~l~~l~~L~~L~l~~N~i~~~ 128 (176)
T 1a9n_A 79 IGEGLDQALPDLTELILT---NN----SLVE--LGDLDPLASLKSLTYLCILRNPVTNK 128 (176)
T ss_dssp ECSCHHHHCTTCCEEECC---SC----CCCC--GGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred cCcchhhcCCCCCEEECC---CC----cCCc--chhhHhhhcCCCCCEEEecCCCCCCc
Confidence 765544789999999998 66 3331 11234677799999999997777654
No 137
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.89 E-value=5.4e-05 Score=67.59 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=87.9
Q ss_pred HHHhccCCCCCEEEecccccccccCCCCCCCCCccccCCCCHHHHHHHHh---CCCCCcEEEecCCCCCCCchhhHHHHH
Q 039096 144 VSIATNCPRLTLLHLAETSTLAAMRGDPDDDGFTAEDARISEEGLIQLFS---GLPLLEELALDVGKNVRDSGSASEALK 220 (554)
Q Consensus 144 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~~~~l~~l~~---~~~~L~~L~L~~c~~l~~~~~~l~~l~ 220 (554)
..+..+-+.|++|+++++ +.|.+.+...+.. .-..|++|+|++| .++|.+. .+++
T Consensus 34 ~~ll~~n~~L~~L~L~~n-------------------n~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga--~alA 91 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNM-------------------KRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEA--RGLI 91 (197)
T ss_dssp HHHHTTCSSCCEEECTTC-------------------CSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHH--TTHH
T ss_pred HHHHhcCCCccEEECCCC-------------------CCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHH--HHHH
Confidence 334446789999999753 3688888766654 4468999999885 5988773 2443
Q ss_pred ---hcCCCCcEeecccccCcccEEEecCCCCCCHHHHHHHHhcC---CCCcEEEecCCC--CCCHHHHHHHHHHhc--CC
Q 039096 221 ---SKCVNLKGLKLGQLHSWLESLSIKNCGDLSDMSLVAIGRGC---SKLVKFEVEGCK--NITVDGLRTLASLLR--ET 290 (554)
Q Consensus 221 ---~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~---~~L~~L~L~~c~--~i~~~~~~~l~~~~~--~~ 290 (554)
..-+ .|++|+|++|. |++.+..+++..+ +.|++|+|+++. .+++.+...+...+. ++
T Consensus 92 ~aL~~N~------------tL~~L~L~~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~t 158 (197)
T 1pgv_A 92 ELIETSP------------SLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENES 158 (197)
T ss_dssp HHHHHCS------------SCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSS
T ss_pred HHHhcCC------------ccCeEecCCCc-CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCC
Confidence 2223 45578888887 9999999888765 569999998753 478888666654331 78
Q ss_pred ccEEEEecc
Q 039096 291 LVVIKIYCC 299 (554)
Q Consensus 291 L~~L~l~~c 299 (554)
|++|++..+
T Consensus 159 L~~L~l~~~ 167 (197)
T 1pgv_A 159 LLRVGISFA 167 (197)
T ss_dssp CCEEECCCC
T ss_pred cCeEeccCC
Confidence 999999754
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.84 E-value=2.3e-05 Score=70.61 Aligned_cols=87 Identities=11% Similarity=0.074 Sum_probs=47.0
Q ss_pred cCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCC
Q 039096 314 IRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTRE 393 (554)
Q Consensus 314 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~ 393 (554)
.+++|++|+++.+.+.......+ ..+++|++|+++++. ++.+....+..+++|+.|+++ ++
T Consensus 52 ~l~~L~~L~Ls~N~i~~i~~~~f-----------~~l~~L~~L~Ls~N~---l~~i~~~~f~~l~~L~~L~L~---~N-- 112 (193)
T 2wfh_A 52 NYKHLTLIDLSNNRISTLSNQSF-----------SNMTQLLTLILSYNR---LRCIPPRTFDGLKSLRLLSLH---GN-- 112 (193)
T ss_dssp GCTTCCEEECCSSCCCCCCTTTT-----------TTCTTCCEEECCSSC---CCBCCTTTTTTCTTCCEEECC---SS--
T ss_pred cccCCCEEECCCCcCCEeCHhHc-----------cCCCCCCEEECCCCc---cCEeCHHHhCCCCCCCEEECC---CC--
Confidence 35556666665555444333344 556666666665544 555555556666666666665 33
Q ss_pred CCCCCccccchhhhhccCCCccceeeecCCc
Q 039096 394 KPLLRDDKAWGLSCLTRYPRLSKLVLDFGDT 424 (554)
Q Consensus 394 ~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~ 424 (554)
.++ ......+..+++|+.|+++.|.+
T Consensus 113 --~l~---~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 113 --DIS---VVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp --CCC---BCCTTTTTTCTTCCEEECCSSCE
T ss_pred --CCC---eeChhhhhcCccccEEEeCCCCe
Confidence 222 11112344466666666664444
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.80 E-value=2e-06 Score=77.93 Aligned_cols=11 Identities=9% Similarity=0.042 Sum_probs=4.6
Q ss_pred CCCcEEEecCC
Q 039096 262 SKLVKFEVEGC 272 (554)
Q Consensus 262 ~~L~~L~L~~c 272 (554)
++|+.|++++|
T Consensus 70 ~~L~~L~l~~n 80 (198)
T 1ds9_A 70 ENLRILSLGRN 80 (198)
T ss_dssp TTCCEEEEEEE
T ss_pred CCCCEEECCCC
Confidence 33444444443
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.75 E-value=2.7e-05 Score=70.09 Aligned_cols=88 Identities=11% Similarity=0.005 Sum_probs=51.5
Q ss_pred cCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCC
Q 039096 314 IRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTRE 393 (554)
Q Consensus 314 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~ 393 (554)
..++|++|+++.+.+.......+ ..+++|++|+++++. ++.+....+..+++|+.|+++ ++
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~-----------~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~---~N-- 112 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAF-----------EGASHIQELQLGENK---IKEISNKMFLGLHQLKTLNLY---DN-- 112 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTT-----------TTCTTCCEEECCSCC---CCEECSSSSTTCTTCCEEECC---SS--
T ss_pred cCCCCCEEECCCCCCCCcCHhHc-----------CCcccCCEEECCCCc---CCccCHHHhcCCCCCCEEECC---CC--
Confidence 35567777776665544444444 566777777776554 566665556667777777776 44
Q ss_pred CCCCCccccchhhhhccCCCccceeeecCCcc
Q 039096 394 KPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTD 425 (554)
Q Consensus 394 ~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~ 425 (554)
.++ ......+..+++|+.|+++.|.++
T Consensus 113 --~l~---~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 113 --QIS---CVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp --CCC---EECTTSSTTCTTCCEEECTTCCBC
T ss_pred --cCC---eeCHHHhhcCCCCCEEEeCCCCcc
Confidence 232 222234455667777777655554
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.75 E-value=5.1e-05 Score=67.14 Aligned_cols=87 Identities=16% Similarity=0.137 Sum_probs=46.1
Q ss_pred CCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCC
Q 039096 315 RDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREK 394 (554)
Q Consensus 315 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~ 394 (554)
+++|++|+++.+.+.......+ ..+++|++|+++++. ++.++...+..+++|+.|+++ ++..
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~-----------~~l~~L~~L~l~~N~---l~~~~~~~~~~l~~L~~L~l~---~N~l- 112 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVF-----------DKLTKLTILYLHENK---LQSLPNGVFDKLTQLKELALD---TNQL- 112 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTT-----------TTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECC---SSCC-
T ss_pred cccccEEECCCCcceEeChhHc-----------cCCCccCEEECCCCC---ccccCHHHhhCCcccCEEECc---CCcc-
Confidence 4556666665554443333333 456667777765544 555555545666677777765 4422
Q ss_pred CCCCccccchhhhhccCCCccceeeecCCcc
Q 039096 395 PLLRDDKAWGLSCLTRYPRLSKLVLDFGDTD 425 (554)
Q Consensus 395 ~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~ 425 (554)
+ ......+..+++|+.|+++.|.++
T Consensus 113 ---~---~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 113 ---K---SVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp ---S---CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ---e---EeCHHHhcCCcccCEEEecCCCee
Confidence 2 111122344666777777655444
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.67 E-value=3.5e-06 Score=85.31 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=15.1
Q ss_pred hcCCCCceEEeecccCCccCccccccCcCCCCCCEEEE
Q 039096 348 TRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRI 385 (554)
Q Consensus 348 ~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l 385 (554)
..+.+|+.+.+.. + ++.+....+.+|++|+++.+
T Consensus 294 ~~~~~L~~i~l~~--~--i~~I~~~aF~~c~~L~~i~l 327 (394)
T 4fs7_A 294 YGCSSLTEVKLLD--S--VKFIGEEAFESCTSLVSIDL 327 (394)
T ss_dssp TTCTTCCEEEECT--T--CCEECTTTTTTCTTCCEECC
T ss_pred ccccccccccccc--c--cceechhhhcCCCCCCEEEe
Confidence 3444555554421 1 33343444445555555554
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.62 E-value=0.00013 Score=64.56 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=66.8
Q ss_pred CCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCC
Q 039096 315 RDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREK 394 (554)
Q Consensus 315 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~ 394 (554)
.++|++|+++.+.+.......+ ..+++|++|+++++. ++.++...+..+++|+.|+++ ++.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~-----------~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~---~N~-- 87 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVF-----------DKLTQLTKLSLSQNQ---IQSLPDGVFDKLTKLTILYLH---ENK-- 87 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTT-----------TTCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECC---SSC--
T ss_pred CCCCcEEEeCCCcccEeCHHHh-----------cCcccccEEECCCCc---ceEeChhHccCCCccCEEECC---CCC--
Confidence 3578999997776554444444 678999999998765 777777767899999999998 553
Q ss_pred CCCCccccchhhhhccCCCccceeeecCCcccccc
Q 039096 395 PLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQ 429 (554)
Q Consensus 395 ~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~ 429 (554)
++ ......+..+++|+.|+++.|.+++...
T Consensus 88 --l~---~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 117 (177)
T 2o6r_A 88 --LQ---SLPNGVFDKLTQLKELALDTNQLKSVPD 117 (177)
T ss_dssp --CC---CCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred --cc---ccCHHHhhCCcccCEEECcCCcceEeCH
Confidence 33 2222345678999999999888875543
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.61 E-value=0.00012 Score=65.72 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=68.5
Q ss_pred CCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCC
Q 039096 316 DRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKP 395 (554)
Q Consensus 316 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~ 395 (554)
++|++|+++.+.+.... ..+ ..+++|+.|+++++. ++.+....+..+++|++|+++ ++
T Consensus 31 ~~l~~L~L~~n~i~~ip-~~~-----------~~l~~L~~L~Ls~N~---i~~i~~~~f~~l~~L~~L~Ls---~N---- 88 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-KEL-----------SNYKHLTLIDLSNNR---ISTLSNQSFSNMTQLLTLILS---YN---- 88 (193)
T ss_dssp TTCCEEECCSSCCCSCC-GGG-----------GGCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECC---SS----
T ss_pred CCCCEEECCCCcCchhH-HHh-----------hcccCCCEEECCCCc---CCEeCHhHccCCCCCCEEECC---CC----
Confidence 56888988777655322 444 789999999998766 888887778999999999998 55
Q ss_pred CCCccccchhhhhccCCCccceeeecCCcccccccc
Q 039096 396 LLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQAA 431 (554)
Q Consensus 396 ~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~~~ 431 (554)
.++ ......+..+++|+.|+++.|.++......
T Consensus 89 ~l~---~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 121 (193)
T 2wfh_A 89 RLR---CIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121 (193)
T ss_dssp CCC---BCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred ccC---EeCHHHhCCCCCCCEEECCCCCCCeeChhh
Confidence 333 222245777999999999988888655433
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.56 E-value=0.00012 Score=65.84 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=68.8
Q ss_pred CCccEEEeeeeeccccchh-hhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCC
Q 039096 316 DRIQKLHIDCVWDGIRSSE-AKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREK 394 (554)
Q Consensus 316 ~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~ 394 (554)
++|++|+++.+.+...... .+ ..+++|++|+++++. ++.+....+..+++|++|+++ ++
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~-----------~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls---~N--- 88 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLF-----------GRLPHLVKLELKRNQ---LTGIEPNAFEGASHIQELQLG---EN--- 88 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSG-----------GGCTTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECC---SC---
T ss_pred CCCCEEECCCCcCCccCCcccc-----------ccCCCCCEEECCCCC---CCCcCHhHcCCcccCCEEECC---CC---
Confidence 3688888877765444432 24 789999999998766 788877778999999999998 55
Q ss_pred CCCCccccchhhhhccCCCccceeeecCCcccccccc
Q 039096 395 PLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDGHNQAA 431 (554)
Q Consensus 395 ~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~~~~~~ 431 (554)
.++ ......+..+++|+.|+++.|.+++.....
T Consensus 89 -~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 121 (192)
T 1w8a_A 89 -KIK---EISNKMFLGLHQLKTLNLYDNQISCVMPGS 121 (192)
T ss_dssp -CCC---EECSSSSTTCTTCCEEECCSSCCCEECTTS
T ss_pred -cCC---ccCHHHhcCCCCCCEEECCCCcCCeeCHHH
Confidence 344 222234667899999999988888765544
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.49 E-value=0.00015 Score=73.28 Aligned_cols=185 Identities=11% Similarity=0.087 Sum_probs=107.9
Q ss_pred CCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeeccccc-----------CcccEEEecCCCCCCHHHHHHHHhcCCCCc
Q 039096 197 LLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLH-----------SWLESLSIKNCGDLSDMSLVAIGRGCSKLV 265 (554)
Q Consensus 197 ~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~-----------~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~ 265 (554)
+|+++.+.. .++..+. .++ .+|++|+.+++.... .+|+.+.+..+ ++..+-.++. +|++|+
T Consensus 158 ~L~~i~lp~--~l~~I~~--~aF-~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~-~~~~L~ 229 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKE--DIF-YYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFL-KTSQLK 229 (401)
T ss_dssp CCCEEECCT--TCCEECS--STT-TTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTT-TCTTCC
T ss_pred CceEEEeCC--CccEehH--HHh-hCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhh-CCCCCC
Confidence 577777754 3433321 144 667777777775421 15666666533 3322222333 388899
Q ss_pred EEEecCCC-CCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeecc-----ccchhhhccC
Q 039096 266 KFEVEGCK-NITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDG-----IRSSEAKATG 339 (554)
Q Consensus 266 ~L~L~~c~-~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~ 339 (554)
.+++..+- .|.+..+. . .+|+.+.+.+. +... +- .....|++|+++.+..+... ..+...+
T Consensus 230 ~l~l~~~l~~I~~~aF~----~--~~L~~i~lp~~--i~~I-~~-~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF--- 296 (401)
T 4fdw_A 230 TIEIPENVSTIGQEAFR----E--SGITTVKLPNG--VTNI-AS-RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL--- 296 (401)
T ss_dssp CEECCTTCCEECTTTTT----T--CCCSEEEEETT--CCEE-CT-TTTTTCTTCCEEEEESSCCCCCTTCEECTTTT---
T ss_pred EEecCCCccCccccccc----c--CCccEEEeCCC--ccEE-Ch-hHhhCCCCCCEEEeCCccccCCcccEECHHHh---
Confidence 99887532 12222211 1 47888888553 2111 11 12345888999998654322 1222333
Q ss_pred CccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceee
Q 039096 340 NTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVL 419 (554)
Q Consensus 340 ~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l 419 (554)
.+|++|+.+.+.. + ++.+....+.+|++|+.+.+. ..+. ..+-.+|..+ +|+.+.+
T Consensus 297 --------~~c~~L~~l~l~~--~--i~~I~~~aF~~c~~L~~l~lp--------~~l~---~I~~~aF~~~-~L~~l~l 352 (401)
T 4fdw_A 297 --------EGCPKLARFEIPE--S--IRILGQGLLGGNRKVTQLTIP--------ANVT---QINFSAFNNT-GIKEVKV 352 (401)
T ss_dssp --------TTCTTCCEECCCT--T--CCEECTTTTTTCCSCCEEEEC--------TTCC---EECTTSSSSS-CCCEEEE
T ss_pred --------hCCccCCeEEeCC--c--eEEEhhhhhcCCCCccEEEEC--------cccc---EEcHHhCCCC-CCCEEEE
Confidence 7888999888852 2 667777778889999999986 3444 3333456667 8998888
Q ss_pred ecCCccc
Q 039096 420 DFGDTDG 426 (554)
Q Consensus 420 ~c~~~~~ 426 (554)
..+.+..
T Consensus 353 ~~n~~~~ 359 (401)
T 4fdw_A 353 EGTTPPQ 359 (401)
T ss_dssp CCSSCCB
T ss_pred cCCCCcc
Confidence 8554443
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.47 E-value=5.6e-05 Score=76.40 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=67.4
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccC
Q 039096 260 GCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATG 339 (554)
Q Consensus 260 ~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 339 (554)
+|++|+.+++.++. ++.-+-..+. + .+|+.+.+... +... +- .....|++|+.+.+..+- ...+...+
T Consensus 178 ~c~~L~~l~l~~n~-l~~I~~~aF~--~-~~L~~l~lp~~--l~~I-~~-~aF~~~~~L~~l~l~~~l-~~I~~~aF--- 245 (401)
T 4fdw_A 178 YCYNLKKADLSKTK-ITKLPASTFV--Y-AGIEEVLLPVT--LKEI-GS-QAFLKTSQLKTIEIPENV-STIGQEAF--- 245 (401)
T ss_dssp TCTTCCEEECTTSC-CSEECTTTTT--T-CCCSEEECCTT--CCEE-CT-TTTTTCTTCCCEECCTTC-CEECTTTT---
T ss_pred CcccCCeeecCCCc-ceEechhhEe--e-cccCEEEeCCc--hhee-hh-hHhhCCCCCCEEecCCCc-cCcccccc---
Confidence 37888888887654 2211111111 2 57777777543 2111 10 122347778888874321 22222222
Q ss_pred CccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCC-CCCCccccchhhhhccCCCcccee
Q 039096 340 NTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREK-PLLRDDKAWGLSCLTRYPRLSKLV 418 (554)
Q Consensus 340 ~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~-~~l~~~~~~~l~~l~~~~~L~~L~ 418 (554)
.+ .+|+.+.+. .+ ++.+....+.+|++|+.+.+. +.... .... ..+-..|..|++|+.+.
T Consensus 246 --------~~-~~L~~i~lp--~~--i~~I~~~aF~~c~~L~~l~l~---~~~~~~~~~~---~I~~~aF~~c~~L~~l~ 306 (401)
T 4fdw_A 246 --------RE-SGITTVKLP--NG--VTNIASRAFYYCPELAEVTTY---GSTFNDDPEA---MIHPYCLEGCPKLARFE 306 (401)
T ss_dssp --------TT-CCCSEEEEE--TT--CCEECTTTTTTCTTCCEEEEE---SSCCCCCTTC---EECTTTTTTCTTCCEEC
T ss_pred --------cc-CCccEEEeC--CC--ccEEChhHhhCCCCCCEEEeC---CccccCCccc---EECHHHhhCCccCCeEE
Confidence 23 577877773 22 556666667788888888876 32110 0001 12223455677777777
Q ss_pred ee
Q 039096 419 LD 420 (554)
Q Consensus 419 l~ 420 (554)
+.
T Consensus 307 l~ 308 (401)
T 4fdw_A 307 IP 308 (401)
T ss_dssp CC
T ss_pred eC
Confidence 76
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.47 E-value=5.2e-05 Score=82.90 Aligned_cols=104 Identities=11% Similarity=0.005 Sum_probs=65.6
Q ss_pred hcCCCCcEEEecCCCCCCHHHHHHHHHHhcCCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhcc
Q 039096 259 RGCSKLVKFEVEGCKNITVDGLRTLASLLRETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKAT 338 (554)
Q Consensus 259 ~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 338 (554)
..+++|+.|+|++|. +.. +..-...+ ++|++|+|++|... . ++.....+++|++|+|+.+.+. ..+..+
T Consensus 221 ~~l~~L~~L~Ls~n~-l~~--l~~~~~~l-~~L~~L~Ls~N~l~-~---lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~-- 289 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ-IFN--ISANIFKY-DFLTRLYLNGNSLT-E---LPAEIKNLSNLRVLDLSHNRLT-SLPAEL-- 289 (727)
T ss_dssp -CCCCCCEEECTTSC-CSC--CCGGGGGC-CSCSCCBCTTSCCS-C---CCGGGGGGTTCCEEECTTSCCS-SCCSSG--
T ss_pred ccCCCCcEEECCCCC-CCC--CChhhcCC-CCCCEEEeeCCcCc-c---cChhhhCCCCCCEEeCcCCcCC-ccChhh--
Confidence 347888888888877 331 11111134 78888888877533 1 1122245677888888777655 334444
Q ss_pred CCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEe
Q 039096 339 GNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIK 386 (554)
Q Consensus 339 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~ 386 (554)
..+++|++|+|++|. ++.++.. +..+++|+.|+++
T Consensus 290 ---------~~l~~L~~L~L~~N~---l~~lp~~-~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 290 ---------GSCFQLKYFYFFDNM---VTTLPWE-FGNLCNLQFLGVE 324 (727)
T ss_dssp ---------GGGTTCSEEECCSSC---CCCCCSS-TTSCTTCCCEECT
T ss_pred ---------cCCCCCCEEECCCCC---CCccChh-hhcCCCccEEeCC
Confidence 677888888887664 6655444 7788888888886
No 149
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.36 E-value=4e-05 Score=83.81 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=7.0
Q ss_pred CCCCcEEEecCCC
Q 039096 261 CSKLVKFEVEGCK 273 (554)
Q Consensus 261 ~~~L~~L~L~~c~ 273 (554)
+++|+.|+|++|.
T Consensus 246 l~~L~~L~Ls~N~ 258 (727)
T 4b8c_D 246 YDFLTRLYLNGNS 258 (727)
T ss_dssp CCSCSCCBCTTSC
T ss_pred CCCCCEEEeeCCc
Confidence 4555555555554
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.33 E-value=0.00041 Score=60.80 Aligned_cols=86 Identities=19% Similarity=0.116 Sum_probs=46.0
Q ss_pred CCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCC
Q 039096 316 DRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKP 395 (554)
Q Consensus 316 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~ 395 (554)
++|++|+++.+.+.......+ ..+++|++|+++++. ++.++...+..+++|+.|+++ ++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~-----------~~l~~L~~L~Ls~N~---l~~l~~~~f~~l~~L~~L~L~---~N---- 88 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVF-----------DRLTQLTRLDLDNNQ---LTVLPAGVFDKLTQLTQLSLN---DN---- 88 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-----------TTCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECC---SS----
T ss_pred CCCcEEEcCCCcCCccChhhh-----------cCcccCCEEECCCCC---cCccChhhccCCCCCCEEECC---CC----
Confidence 446666665554444434444 556666666665443 555555545666666666665 33
Q ss_pred CCCccccchhhhhccCCCccceeeecCCcc
Q 039096 396 LLRDDKAWGLSCLTRYPRLSKLVLDFGDTD 425 (554)
Q Consensus 396 ~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~ 425 (554)
.++ ......+..+++|+.|+++.|.++
T Consensus 89 ~l~---~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLK---SIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCC---CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccC---EeCHHHhcCCCCCCEEEeCCCCCC
Confidence 222 111123445666666666655443
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.32 E-value=0.00016 Score=72.91 Aligned_cols=56 Identities=16% Similarity=0.076 Sum_probs=29.4
Q ss_pred hcCCCCcEEeccCC-cccccccccCCCccCCCcccceeeccccc-ccCcccHHHHHhcCCCCcEEEec
Q 039096 22 LCFDAVTNLQLSNI-SPWGHSLLFSPSSSSMDPRLLADLLQMSF-LCFGAEFVPLLKHCKCLTSVDLS 87 (554)
Q Consensus 22 ~~~~~L~~L~Ls~~-~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~l~~~~~~~~~L~~L~L~ 87 (554)
..|.+|+.+.|... ..++. .++. .+.+|+.+.+...- .+. ...+..|++|+.+.+.
T Consensus 68 ~~c~~L~~i~lp~~i~~I~~-----~aF~-~c~~L~~i~lp~~l~~I~----~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 68 QGCRKVTEIKIPSTVREIGE-----FAFE-NCSKLEIINIPDSVKMIG----RCTFSGCYALKSILLP 125 (394)
T ss_dssp TTCTTEEEEECCTTCCEECT-----TTTT-TCTTCCEECCCTTCCEEC----TTTTTTCTTCCCCCCC
T ss_pred hCCCCceEEEeCCCccCcch-----hHhh-CCCCCcEEEeCCCceEcc----chhhcccccchhhccc
Confidence 35678888888632 22222 2333 67788888775210 001 1124456666666553
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.31 E-value=0.00026 Score=62.09 Aligned_cols=101 Identities=17% Similarity=0.074 Sum_probs=67.9
Q ss_pred eEEEEecCCCchhchhhc-CCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHH-HHHhcCCCCcE
Q 039096 6 TSITLRGNACNLNIVPLC-FDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFV-PLLKHCKCLTS 83 (554)
Q Consensus 6 ~~L~l~~~~~~l~~l~~~-~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~-~~~~~~~~L~~ 83 (554)
+.++++++ .+..+|.. .++|+.|+|+++ .+..-.. ..+. .+.+|+.|++++... ..+. ..+..+++|++
T Consensus 12 ~~l~~s~n--~l~~ip~~~~~~l~~L~L~~N-~i~~~~~--~~~~-~l~~L~~L~Ls~N~l---~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 12 TTVDCSGK--SLASVPTGIPTTTQVLYLYDN-QITKLEP--GVFD-RLTQLTRLDLDNNQL---TVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TEEECTTS--CCSSCCSCCCTTCSEEECCSS-CCCCCCT--TTTT-TCTTCSEEECCSSCC---CCCCTTTTTTCTTCCE
T ss_pred CEEEeCCC--CcCccCccCCCCCcEEEcCCC-cCCccCh--hhhc-CcccCCEEECCCCCc---CccChhhccCCCCCCE
Confidence 45777665 35567764 579999999998 4433222 3344 889999999994421 1111 23567999999
Q ss_pred EEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCC
Q 039096 84 VDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSF 120 (554)
Q Consensus 84 L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 120 (554)
|+|++| .+....+..+..+ ++|++|++++|.+
T Consensus 83 L~L~~N-~l~~~~~~~~~~l----~~L~~L~L~~N~~ 114 (170)
T 3g39_A 83 LSLNDN-QLKSIPRGAFDNL----KSLTHIWLLNNPW 114 (170)
T ss_dssp EECCSS-CCCCCCTTTTTTC----TTCCEEECCSSCB
T ss_pred EECCCC-ccCEeCHHHhcCC----CCCCEEEeCCCCC
Confidence 999988 4444333334444 6999999999974
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.30 E-value=0.00046 Score=60.80 Aligned_cols=86 Identities=17% Similarity=0.178 Sum_probs=46.5
Q ss_pred CCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCC
Q 039096 316 DRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKP 395 (554)
Q Consensus 316 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~ 395 (554)
++|++|+++.+.+.......+ ..+++|++|+++++. ++.++...+..+++|+.|+++ ++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~-----------~~l~~L~~L~Ls~N~---l~~i~~~~~~~l~~L~~L~L~---~N---- 91 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVF-----------DHLVNLQQLYFNSNK---LTAIPTGVFDKLTQLTQLDLN---DN---- 91 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-----------TTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECC---SS----
T ss_pred CCCcEEEeCCCCccccCHHHh-----------cCCcCCCEEECCCCC---CCccChhHhCCcchhhEEECC---CC----
Confidence 446666665555444333344 566667777775543 555555545666677777775 43
Q ss_pred CCCccccchhhhhccCCCccceeeecCCcc
Q 039096 396 LLRDDKAWGLSCLTRYPRLSKLVLDFGDTD 425 (554)
Q Consensus 396 ~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~ 425 (554)
.++ ......+..+++|+.|+++.|.+.
T Consensus 92 ~l~---~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLK---SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCC---CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccc---eeCHHHhccccCCCEEEeCCCCcc
Confidence 222 111122445666777776655443
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.28 E-value=0.00034 Score=61.61 Aligned_cols=101 Identities=17% Similarity=0.071 Sum_probs=67.3
Q ss_pred eEEEEecCCCchhchhhc-CCCCcEEeccCCcccccccccCCCccCCCcccceeecccccccCcccHH-HHHhcCCCCcE
Q 039096 6 TSITLRGNACNLNIVPLC-FDAVTNLQLSNISPWGHSLLFSPSSSSMDPRLLADLLQMSFLCFGAEFV-PLLKHCKCLTS 83 (554)
Q Consensus 6 ~~L~l~~~~~~l~~l~~~-~~~L~~L~Ls~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~l~-~~~~~~~~L~~ 83 (554)
+.++++++ .+..+|.. .++|+.|+|+++ .+..-.. ..+. .+.+|+.|++++... ..+. ..+..+++|++
T Consensus 15 ~~l~~~~n--~l~~iP~~~~~~L~~L~Ls~N-~l~~~~~--~~~~-~l~~L~~L~Ls~N~l---~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQNI--RLASVPAGIPTDKQRLWLNNN-QITKLEP--GVFD-HLVNLQQLYFNSNKL---TAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECCSS--CCSSCCSCCCTTCSEEECCSS-CCCCCCT--TTTT-TCTTCCEEECCSSCC---CCCCTTTTTTCTTCCE
T ss_pred cEEEeCCC--CCCccCCCcCCCCcEEEeCCC-CccccCH--HHhc-CCcCCCEEECCCCCC---CccChhHhCCcchhhE
Confidence 46667665 25567764 479999999998 4433222 3344 889999999994421 1121 22567899999
Q ss_pred EEecCCCCCCCChhHHHhhcCcCCCCccEEEcCCCCC
Q 039096 84 VDLSSFYHWTEDLPPVLKAYPDKSAILTCLNLLKTSF 120 (554)
Q Consensus 84 L~L~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 120 (554)
|+|++| .+....+..+..+ ++|++|++++|.+
T Consensus 86 L~L~~N-~l~~l~~~~~~~l----~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 86 LDLNDN-HLKSIPRGAFDNL----KSLTHIYLYNNPW 117 (174)
T ss_dssp EECCSS-CCCCCCTTTTTTC----TTCSEEECCSSCB
T ss_pred EECCCC-ccceeCHHHhccc----cCCCEEEeCCCCc
Confidence 999987 3443333234444 6999999999974
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.75 E-value=0.00044 Score=69.73 Aligned_cols=58 Identities=17% Similarity=0.277 Sum_probs=29.4
Q ss_pred hcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeee
Q 039096 348 TRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLD 420 (554)
Q Consensus 348 ~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~ 420 (554)
.+|++|+.+.+. .. ++.+....+.+|++|+++.+. ..++ .-+-.+|..|.+|+.+.+.
T Consensus 285 ~~c~~L~~i~l~--~~--i~~I~~~aF~~c~~L~~i~lp--------~~v~---~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 285 MNCPALQDIEFS--SR--ITELPESVFAGCISLKSIDIP--------EGIT---QILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp TTCTTCCEEECC--TT--CCEECTTTTTTCTTCCEEECC--------TTCC---EECTTTTTTCTTCCEEEEC
T ss_pred ccccccccccCC--Cc--ccccCceeecCCCCcCEEEeC--------Cccc---EehHhHhhCCCCCCEEEEC
Confidence 455666666553 11 444555555666666666664 2233 2222344556666666554
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.37 E-value=0.0071 Score=56.82 Aligned_cols=89 Identities=20% Similarity=0.203 Sum_probs=55.5
Q ss_pred HhcCCCCcEEEecCCCCCCC--ChhHHHhhcCcCCCCccEEEcCCCCCCCCCCHHHHHHHHHhCCChHhhHHHHhccCCC
Q 039096 75 LKHCKCLTSVDLSSFYHWTE--DLPPVLKAYPDKSAILTCLNLLKTSFSEDYRPQEIIEIIAARPNLNKWAVSIATNCPR 152 (554)
Q Consensus 75 ~~~~~~L~~L~L~~~~~~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~~~i~~~~l~~l~~~~~~L~~L~~~~~~~~~~ 152 (554)
..++++|++|+|++| .+.+ .++..+..+ ++|+.|+|++|. +.+. ..+..+ ..+ +
T Consensus 166 ~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l----~~L~~L~Ls~N~----i~~~---------~~l~~l-----~~l-~ 221 (267)
T 3rw6_A 166 EENIPELLSLNLSNN-RLYRLDDMSSIVQKA----PNLKILNLSGNE----LKSE---------RELDKI-----KGL-K 221 (267)
T ss_dssp HHHCTTCCEEECTTS-CCCCCGGGTTHHHHS----TTCCEEECTTSC----CCSG---------GGGGGG-----TTS-C
T ss_pred HhhCCCCCEEECCCC-CCCCCccchhHHhhC----CCCCEEECCCCc----cCCc---------hhhhhc-----ccC-C
Confidence 367999999999998 4444 344455556 599999999987 2221 111111 123 8
Q ss_pred CCEEEecccccccccCCCCCCCCCccccCCCC--HHHHHHHHhCCCCCcEEEe
Q 039096 153 LTLLHLAETSTLAAMRGDPDDDGFTAEDARIS--EEGLIQLFSGLPLLEELAL 203 (554)
Q Consensus 153 L~~L~l~~c~~l~~~~~~~~~~g~~~~~~~i~--~~~l~~l~~~~~~L~~L~L 203 (554)
|++|++++++.- ..+. ......+...+|+|+.||-
T Consensus 222 L~~L~L~~Npl~----------------~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 222 LEELWLDGNSLC----------------DTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp CSEEECTTSTTG----------------GGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred cceEEccCCcCc----------------cccCcchhHHHHHHHHCcccCeECC
Confidence 999999886311 1111 1223345567899998875
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.05 E-value=0.0094 Score=58.59 Aligned_cols=81 Identities=15% Similarity=0.053 Sum_probs=46.9
Q ss_pred CCccEEEEeccCCCChhHHHHHHhhcCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCc
Q 039096 289 ETLVVIKIYCCENLGAVASCKALKPIRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTP 368 (554)
Q Consensus 289 ~~L~~L~l~~c~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~ 368 (554)
++|++|+|+++..+..... .....+++|++|+|+.+.+.......+ .++++|+.|+|+++. ++.
T Consensus 31 ~~L~~L~l~~~n~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~-----------~~l~~L~~L~l~~N~---l~~ 94 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLEL--RDLRGLGELRNLTIVKSGLRFVAPDAF-----------HFTPRLSRLNLSFNA---LES 94 (347)
T ss_dssp SCCSEEECCSCSSCCEECG--GGSCSCCCCSEEECCSSCCCEECTTGG-----------GSCSCCCEEECCSSC---CSC
T ss_pred CCeeEEEccCCCCCCCcCh--hHhccccCCCEEECCCCccceeCHHHh-----------cCCcCCCEEeCCCCc---cce
Confidence 4677777775333322211 122346677777776665555444444 567777777776544 666
Q ss_pred cccccCcCCCCCCEEEEe
Q 039096 369 LPVAGLDECPILENIRIK 386 (554)
Q Consensus 369 l~~~~l~~~~~L~~L~l~ 386 (554)
++...+..++ |+.|++.
T Consensus 95 ~~~~~~~~~~-L~~l~l~ 111 (347)
T 2ifg_A 95 LSWKTVQGLS-LQELVLS 111 (347)
T ss_dssp CCSTTTCSCC-CCEEECC
T ss_pred eCHHHcccCC-ceEEEee
Confidence 6555444444 7777775
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.61 E-value=0.015 Score=54.60 Aligned_cols=85 Identities=20% Similarity=0.245 Sum_probs=45.4
Q ss_pred HhCCCCCcEEEecCCCCCCCchhhHHHHHhcCCCCcEeecccccCcccEEEecCCCCCCHH-HHHHHHhcCCCCcEEEec
Q 039096 192 FSGLPLLEELALDVGKNVRDSGSASEALKSKCVNLKGLKLGQLHSWLESLSIKNCGDLSDM-SLVAIGRGCSKLVKFEVE 270 (554)
Q Consensus 192 ~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~l~~~~~~L~~L~l~~~~~l~~~-~l~~l~~~~~~L~~L~L~ 270 (554)
...+++|+.|+|++ +.+++... +..+...+++|+.|+ |++|. +++. .+..+. .+ +|++|++.
T Consensus 166 ~~~l~~L~~L~Ls~-N~l~~l~~-l~~~~~~l~~L~~L~------------Ls~N~-i~~~~~l~~l~-~l-~L~~L~L~ 228 (267)
T 3rw6_A 166 EENIPELLSLNLSN-NRLYRLDD-MSSIVQKAPNLKILN------------LSGNE-LKSERELDKIK-GL-KLEELWLD 228 (267)
T ss_dssp HHHCTTCCEEECTT-SCCCCCGG-GTTHHHHSTTCCEEE------------CTTSC-CCSGGGGGGGT-TS-CCSEEECT
T ss_pred HhhCCCCCEEECCC-CCCCCCcc-chhHHhhCCCCCEEE------------CCCCc-cCCchhhhhcc-cC-CcceEEcc
Confidence 35678888888877 45765321 223335677777544 44444 3332 111111 13 78888888
Q ss_pred CCCCCCH-----HH-HHHHHHHhcCCccEEE
Q 039096 271 GCKNITV-----DG-LRTLASLLRETLVVIK 295 (554)
Q Consensus 271 ~c~~i~~-----~~-~~~l~~~~~~~L~~L~ 295 (554)
+|+ +.. .. ...+...+ |+|+.|+
T Consensus 229 ~Np-l~~~~~~~~~y~~~il~~~-P~L~~LD 257 (267)
T 3rw6_A 229 GNS-LCDTFRDQSTYISAIRERF-PKLLRLD 257 (267)
T ss_dssp TST-TGGGCSSHHHHHHHHHHHC-TTCCEES
T ss_pred CCc-CccccCcchhHHHHHHHHC-cccCeEC
Confidence 877 442 11 22334444 6676665
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.95 E-value=0.038 Score=54.16 Aligned_cols=90 Identities=14% Similarity=0.078 Sum_probs=62.0
Q ss_pred hhcCCCccEEEeee-eeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCC
Q 039096 312 KPIRDRIQKLHIDC-VWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGD 390 (554)
Q Consensus 312 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~ 390 (554)
...+++|++|+|+. +.+.......+ ..+++|+.|+|+++. ++.+....+.++++|+.|+++ +
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~-----------~~l~~L~~L~l~~N~---l~~~~~~~~~~l~~L~~L~l~---~ 89 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDL-----------RGLGELRNLTIVKSG---LRFVAPDAFHFTPRLSRLNLS---F 89 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGS-----------CSCCCCSEEECCSSC---CCEECTTGGGSCSCCCEEECC---S
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHh-----------ccccCCCEEECCCCc---cceeCHHHhcCCcCCCEEeCC---C
Confidence 44567899999974 76655555555 788999999997665 788887778889999999997 5
Q ss_pred CCCCCCCCccccchhhhhccCCCccceeeecCCccc
Q 039096 391 TREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDG 426 (554)
Q Consensus 391 c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~ 426 (554)
++...... ..+..++ |+.|++..|.+..
T Consensus 90 N~l~~~~~-------~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSW-------KTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCS-------TTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCH-------HHcccCC-ceEEEeeCCCccC
Confidence 43221111 1222233 8899988766654
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.83 E-value=0.13 Score=51.26 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=40.5
Q ss_pred hcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeee
Q 039096 348 TRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLD 420 (554)
Q Consensus 348 ~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~ 420 (554)
.+|.+|+.+.+.. . ++.+....+.+|++|+.+.+. ..+. .-+-..|..|.+|+.+.+.
T Consensus 262 ~~c~~L~~i~lp~--~--~~~I~~~aF~~c~~L~~i~l~--------~~i~---~I~~~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 262 DSCAYLASVKMPD--S--VVSIGTGAFMNCPALQDIEFS--------SRIT---ELPESVFAGCISLKSIDIP 319 (394)
T ss_dssp TTCSSCCEEECCT--T--CCEECTTTTTTCTTCCEEECC--------TTCC---EECTTTTTTCTTCCEEECC
T ss_pred eecccccEEeccc--c--cceecCcccccccccccccCC--------Cccc---ccCceeecCCCCcCEEEeC
Confidence 6788888888842 2 445556667888999988885 4444 3334467778888888886
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.51 E-value=0.37 Score=47.63 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=32.1
Q ss_pred hcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeeecCCccc
Q 039096 348 TRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLDFGDTDG 426 (554)
Q Consensus 348 ~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~c~~~~~ 426 (554)
.++.+|+.+.+.. + ++.+....+.+|.+|+.+.+. ..+. ..+-..+..|.+|+.+.+..+.++.
T Consensus 237 ~~~~~L~~i~lp~--~--v~~I~~~aF~~~~~l~~i~l~--------~~i~---~i~~~aF~~c~~L~~i~l~~~~i~~ 300 (379)
T 4h09_A 237 YGMKALDEIAIPK--N--VTSIGSFLLQNCTALKTLNFY--------AKVK---TVPYLLCSGCSNLTKVVMDNSAIET 300 (379)
T ss_dssp TTCSSCCEEEECT--T--CCEECTTTTTTCTTCCEEEEC--------CCCS---EECTTTTTTCTTCCEEEECCTTCCE
T ss_pred cCCccceEEEcCC--C--ccEeCccccceeehhcccccc--------ccce---eccccccccccccccccccccccce
Confidence 4556666666531 1 444444445666666666664 2333 2222344456666666665333433
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=87.30 E-value=0.78 Score=45.23 Aligned_cols=81 Identities=10% Similarity=0.080 Sum_probs=46.4
Q ss_pred cCCCccEEEeeeeeccccchhhhccCCccchhhhhcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEeeeCCCCC
Q 039096 314 IRDRIQKLHIDCVWDGIRSSEAKATGNTSTIFSKTRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIKMEGDTRE 393 (554)
Q Consensus 314 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~~~~~c~~ 393 (554)
.|..|+.+.+...- ...+...+ .+|++|+.+.+.... ++.+....+.+|++|+++.+.
T Consensus 261 ~~~~l~~i~l~~~i-~~i~~~aF-----------~~c~~L~~i~l~~~~---i~~I~~~aF~~c~~L~~i~lp------- 318 (379)
T 4h09_A 261 NCTALKTLNFYAKV-KTVPYLLC-----------SGCSNLTKVVMDNSA---IETLEPRVFMDCVKLSSVTLP------- 318 (379)
T ss_dssp TCTTCCEEEECCCC-SEECTTTT-----------TTCTTCCEEEECCTT---CCEECTTTTTTCTTCCEEECC-------
T ss_pred eeehhccccccccc-eecccccc-----------ccccccccccccccc---cceehhhhhcCCCCCCEEEcC-------
Confidence 46667777763321 22222233 567777777774322 555666666777777777775
Q ss_pred CCCCCccccchhhhhccCCCccceeee
Q 039096 394 KPLLRDDKAWGLSCLTRYPRLSKLVLD 420 (554)
Q Consensus 394 ~~~l~~~~~~~l~~l~~~~~L~~L~l~ 420 (554)
..+. .-+-.+|.+|.+|+.+.+.
T Consensus 319 -~~l~---~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 319 -TALK---TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp -TTCC---EECTTTTTTCTTCCCCCCC
T ss_pred -cccc---EEHHHHhhCCCCCCEEEEC
Confidence 3344 3333456667777777664
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=69.91 E-value=4 Score=33.14 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=10.9
Q ss_pred chhhcCC-CCcEEeccCC
Q 039096 19 IVPLCFD-AVTNLQLSNI 35 (554)
Q Consensus 19 ~l~~~~~-~L~~L~Ls~~ 35 (554)
.+|..++ +|+.|+|+++
T Consensus 24 ~vP~~lp~~l~~L~Ls~N 41 (130)
T 3rfe_A 24 SLPTAFPVDTTELVLTGN 41 (130)
T ss_dssp TSCSCCCTTCSEEECTTS
T ss_pred cCCCCCCcCCCEEECCCC
Confidence 5665554 5777777766
No 164
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.83 E-value=6.6 Score=30.20 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=17.8
Q ss_pred hcCCCCceEEeecccCCccCccccccCcCCCCCCEEEEe
Q 039096 348 TRWKSLKELSFWIEVGELLTPLPVAGLDECPILENIRIK 386 (554)
Q Consensus 348 ~~~~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~ 386 (554)
.+|.+|+.+.|- .. ++.+....+.+|.+|+.+.+.
T Consensus 17 ~~c~~L~~i~iP--~~--v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 17 AGNTVIREITVQ--PN--IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTCTTCCCEEEC--TT--SSCCCTTSSTTCTTCCCEEEC
T ss_pred cCCCCCcEEEcC--Cc--hheEcHHHHhccCCccEEEEc
Confidence 455555555552 11 444444445555555555553
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=46.94 E-value=11 Score=30.40 Aligned_cols=33 Identities=30% Similarity=0.305 Sum_probs=25.9
Q ss_pred CCCceEEeecccCCccCccccccCcCCCCCCEEEEe
Q 039096 351 KSLKELSFWIEVGELLTPLPVAGLDECPILENIRIK 386 (554)
Q Consensus 351 ~~L~~L~l~~c~~~~~t~l~~~~l~~~~~L~~L~l~ 386 (554)
++|+.|+|+++. ++.++...+..+++|+.|++.
T Consensus 31 ~~l~~L~Ls~N~---l~~l~~~~f~~l~~L~~L~L~ 63 (130)
T 3rfe_A 31 VDTTELVLTGNN---LTALPPGLLDALPALRTAHLG 63 (130)
T ss_dssp TTCSEEECTTSC---CSSCCTTTGGGCTTCCEEECC
T ss_pred cCCCEEECCCCc---CCccChhhhhhccccCEEEec
Confidence 468888886554 778877777888888888887
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.67 E-value=29 Score=26.48 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=36.0
Q ss_pred cCccccccCcCCCCCCEEEEeeeCCCCCCCCCCccccchhhhhccCCCccceeee
Q 039096 366 LTPLPVAGLDECPILENIRIKMEGDTREKPLLRDDKAWGLSCLTRYPRLSKLVLD 420 (554)
Q Consensus 366 ~t~l~~~~l~~~~~L~~L~l~~~~~c~~~~~l~~~~~~~l~~l~~~~~L~~L~l~ 420 (554)
++.+....+.+|++|+++.|- ..++ ..+-..|..|.+|+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP--------~~v~---~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQ--------PNIG---LLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEEC--------TTSS---CCCTTSSTTCTTCCCEEEC
T ss_pred cCEecHHHhcCCCCCcEEEcC--------Cchh---eEcHHHHhccCCccEEEEc
Confidence 677777788999999999997 5566 4455678889999999997
Done!