BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039105
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 175 bits (443), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 123/427 (28%), Positives = 205/427 (48%), Gaps = 31/427 (7%)
Query: 48 YDASFKVVLLESRDRLGGRIHTDYSF-GCPVDMGASWLHGVCNENPLAPLIRRLGLTLYR 106
++ KV +LE++DR+GGR+ D SF G V GA ++G C NP+A + +LG+++++
Sbjct: 376 HNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNG-CINNPVALMCEQLGISMHK 434
Query: 107 TSGDNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTNDMSVLQ 166
E L G + + ++ F +L+ + R + T V
Sbjct: 435 FG-----------ERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPL 483
Query: 167 AISIVLDRHPELRQEGLAY-----EVLQWYICRMEAWFAVDADMISLKCWDQEQVLS--- 218
I +++ G+ + +VLQ+++ +E + +S + WD + +
Sbjct: 484 GEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFA 543
Query: 219 GGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPL 278
G H L+ GY +I+ L++ +DI+L V I ++V VT DG + A +VTVPL
Sbjct: 544 GDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPL 603
Query: 279 GILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPN----VELLGVVAPTSY 334
+L+ IQF P L E K+ AI +G G KIAL+F FW + + G V P++
Sbjct: 604 ALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSAS 663
Query: 335 ACG---YFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFP--DATEP 389
G F ++ H VL+ + AG + L D+ M L+++F + +P
Sbjct: 664 KRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDP 723
Query: 390 VQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPL-GNLFFGGEAVSMEHQGSVHGAY 448
+Y V+RW TDP YS+ G G+ Y+ + + G +FF GEA + +V GAY
Sbjct: 724 TKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAY 783
Query: 449 SAGVMAA 455
+GV A
Sbjct: 784 LSGVREA 790
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 174 bits (442), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 123/427 (28%), Positives = 205/427 (48%), Gaps = 31/427 (7%)
Query: 48 YDASFKVVLLESRDRLGGRIHTDYSF-GCPVDMGASWLHGVCNENPLAPLIRRLGLTLYR 106
++ KV +LE++DR+GGR+ D SF G V GA ++G C NP+A + +LG+++++
Sbjct: 356 HNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNG-CINNPVALMCEQLGISMHK 414
Query: 107 TSGDNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTNDMSVLQ 166
E L G + + ++ F +L+ + R + T V
Sbjct: 415 FG-----------ERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPL 463
Query: 167 AISIVLDRHPELRQEGLAY-----EVLQWYICRMEAWFAVDADMISLKCWDQEQVLS--- 218
I +++ G+ + +VLQ+++ +E + +S + WD + +
Sbjct: 464 GEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFA 523
Query: 219 GGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPL 278
G H L+ GY +I+ L++ +DI+L V I ++V VT DG + A +VTVPL
Sbjct: 524 GDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPL 583
Query: 279 GILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPN----VELLGVVAPTSY 334
+L+ IQF P L E K+ AI +G G KIAL+F FW + + G V P++
Sbjct: 584 ALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSAS 643
Query: 335 ACG---YFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFP--DATEP 389
G F ++ H VL+ + AG + L D+ M L+++F + +P
Sbjct: 644 KRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDP 703
Query: 390 VQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPL-GNLFFGGEAVSMEHQGSVHGAY 448
+Y V+RW TDP YS+ G G+ Y+ + + G +FF GEA + +V GAY
Sbjct: 704 TKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAY 763
Query: 449 SAGVMAA 455
+GV A
Sbjct: 764 LSGVREA 770
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 174 bits (441), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 123/427 (28%), Positives = 205/427 (48%), Gaps = 31/427 (7%)
Query: 48 YDASFKVVLLESRDRLGGRIHTDYSF-GCPVDMGASWLHGVCNENPLAPLIRRLGLTLYR 106
++ KV +LE++DR+GGR+ D SF G V GA ++G C NP+A + +LG+++++
Sbjct: 364 HNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNG-CINNPVALMCEQLGISMHK 422
Query: 107 TSGDNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTNDMSVLQ 166
E L G + + ++ F +L+ + R + T V
Sbjct: 423 FG-----------ERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPL 471
Query: 167 AISIVLDRHPELRQEGLAY-----EVLQWYICRMEAWFAVDADMISLKCWDQEQVLS--- 218
I +++ G+ + +VLQ+++ +E + +S + WD + +
Sbjct: 472 GEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFA 531
Query: 219 GGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPL 278
G H L+ GY +I+ L++ +DI+L V I ++V VT DG + A +VTVPL
Sbjct: 532 GDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPL 591
Query: 279 GILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPN----VELLGVVAPTSY 334
+L+ IQF P L E K+ AI +G G KIAL+F FW + + G V P++
Sbjct: 592 ALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSAS 651
Query: 335 ACG---YFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFP--DATEP 389
G F ++ H VL+ + AG + L D+ M L+++F + +P
Sbjct: 652 KRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDP 711
Query: 390 VQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPL-GNLFFGGEAVSMEHQGSVHGAY 448
+Y V+RW TDP YS+ G G+ Y+ + + G +FF GEA + +V GAY
Sbjct: 712 TKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAY 771
Query: 449 SAGVMAA 455
+GV A
Sbjct: 772 LSGVREA 778
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 155/299 (51%), Gaps = 32/299 (10%)
Query: 186 EVLQWYICRMEAWFAVDADMISLKCWDQEQ--VLSGGHGLMVQGYDPVIKALSKDIDIRL 243
++L W+ +E A +SLK WDQ+ +G H + GY V AL++ +DI+L
Sbjct: 357 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 416
Query: 244 NQRVTKI---SNGCNKVMV-TVEDGRNFV--ADAAIVTVPLGILKAN--LIQFEPKLPEW 295
N V ++ ++GC + V T + F+ DA + T+PLG+LK +QF P LPEW
Sbjct: 417 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 476
Query: 296 KLSAIADIGVGNENKIALRFDNVFW-PNVELLGVVAPTSYACG---YFLNLHKATGHPVL 351
K SA+ +G GN NK+ L FD VFW P+V L G V T+ + G F NL+KA P+L
Sbjct: 477 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKA---PIL 533
Query: 352 VYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDAT--EPVQYLVSRWGTDPNTLGCYSY 409
+ + AG A +E +SD+ + LK +F + +P + +VSRW DP G YSY
Sbjct: 534 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSY 593
Query: 410 DVVGMPGDLYERLRAPLG-------------NLFFGGEAVSMEHQGSVHGAYSAGVMAA 455
G G+ Y+ + P+ LFF GE + +VHGA +G+ A
Sbjct: 594 VAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 652
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 54 VVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSGDNSV 113
V LLE+RDR+GGR+ T D+GA + G+ NP+A + +++ + L +
Sbjct: 134 VTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAKIK----- 187
Query: 114 LYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTNDMSVL-------- 165
+ LY+ +G V KE V + F R+L T + H D +VL
Sbjct: 188 ------QKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYL--SHQLDFNVLNNKPVSLG 239
Query: 166 QAISIVL 172
QA+ +V+
Sbjct: 240 QALEVVI 246
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 155/299 (51%), Gaps = 32/299 (10%)
Query: 186 EVLQWYICRMEAWFAVDADMISLKCWDQEQ--VLSGGHGLMVQGYDPVIKALSKDIDIRL 243
++L W+ +E A +SLK WDQ+ +G H + GY V AL++ +DI+L
Sbjct: 356 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 415
Query: 244 NQRVTKI---SNGCNKVMV-TVEDGRNFV--ADAAIVTVPLGILKAN--LIQFEPKLPEW 295
N V ++ ++GC + V T + F+ DA + T+PLG+LK +QF P LPEW
Sbjct: 416 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 475
Query: 296 KLSAIADIGVGNENKIALRFDNVFW-PNVELLGVVAPTSYACG---YFLNLHKATGHPVL 351
K SA+ +G GN NK+ L FD VFW P+V L G V T+ + G F NL+KA P+L
Sbjct: 476 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKA---PIL 532
Query: 352 VYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDAT--EPVQYLVSRWGTDPNTLGCYSY 409
+ + AG A +E +SD+ + LK +F + +P + +VSRW DP G YSY
Sbjct: 533 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSY 592
Query: 410 DVVGMPGDLYERLRAPLG-------------NLFFGGEAVSMEHQGSVHGAYSAGVMAA 455
G G+ Y+ + P+ LFF GE + +VHGA +G+ A
Sbjct: 593 VAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 54 VVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSGDNSV 113
V LLE+RDR+GGR+ T D+GA + G+ NP+A + +++ + L +
Sbjct: 133 VTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAKIK----- 186
Query: 114 LYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTNDMSVL-------- 165
+ LY+ +G V KE V + F R+L T + H D +VL
Sbjct: 187 ------QKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYL--SHQLDFNVLNNKPVSLG 238
Query: 166 QAISIVL 172
QA+ +V+
Sbjct: 239 QALEVVI 245
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 155/299 (51%), Gaps = 32/299 (10%)
Query: 186 EVLQWYICRMEAWFAVDADMISLKCWDQEQ--VLSGGHGLMVQGYDPVIKALSKDIDIRL 243
++L W+ +E A +SLK WDQ+ +G H + GY V AL++ +DI+L
Sbjct: 356 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 415
Query: 244 NQRVTKI---SNGCNKVMV-TVEDGRNFV--ADAAIVTVPLGILKAN--LIQFEPKLPEW 295
N V ++ ++GC + V T + F+ DA + T+PLG+LK +QF P LPEW
Sbjct: 416 NTAVRQVQYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 475
Query: 296 KLSAIADIGVGNENKIALRFDNVFW-PNVELLGVVAPTSYACG---YFLNLHKATGHPVL 351
K SA+ +G GN NK+ L FD VFW P+V L G V T+ + G F NL+KA P+L
Sbjct: 476 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKA---PIL 532
Query: 352 VYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDAT--EPVQYLVSRWGTDPNTLGCYSY 409
+ + AG A +E +SD+ + LK +F + +P + +VSRW DP G YSY
Sbjct: 533 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSY 592
Query: 410 DVVGMPGDLYERLRAPLG-------------NLFFGGEAVSMEHQGSVHGAYSAGVMAA 455
G G+ Y+ + P+ LFF GE + +VHGA +G+ A
Sbjct: 593 VAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 54 VVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSGDNSV 113
V LLE+RDR+GGR+ T D+GA + G+ NP+A + +++ + L +
Sbjct: 133 VTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAKIK----- 186
Query: 114 LYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTNDMSVL-------- 165
+ LY+ +G V KE V + F R+L T + H D +VL
Sbjct: 187 ------QKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYL--SHQLDFNVLNNKPVSLG 238
Query: 166 QAISIVL 172
QA+ +V+
Sbjct: 239 QALEVVI 245
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 155/299 (51%), Gaps = 32/299 (10%)
Query: 186 EVLQWYICRMEAWFAVDADMISLKCWDQEQ--VLSGGHGLMVQGYDPVIKALSKDIDIRL 243
++L W+ +E A +SLK WDQ+ +G H + GY V AL++ +DI+L
Sbjct: 356 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 415
Query: 244 NQRVTKI---SNGCNKVMV-TVEDGRNFV--ADAAIVTVPLGILKAN--LIQFEPKLPEW 295
N V ++ ++GC + V T + F+ DA + T+PLG+LK +QF P LPEW
Sbjct: 416 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 475
Query: 296 KLSAIADIGVGNENKIALRFDNVFW-PNVELLGVVAPTSYACG---YFLNLHKATGHPVL 351
K SA+ +G GN NK+ L FD VFW P+V L G V T+ + G F NL+KA P+L
Sbjct: 476 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKA---PIL 532
Query: 352 VYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDAT--EPVQYLVSRWGTDPNTLGCYSY 409
+ + AG A +E +SD+ + LK +F + +P + +VSRW DP G YSY
Sbjct: 533 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSY 592
Query: 410 DVVGMPGDLYERLRAPLG-------------NLFFGGEAVSMEHQGSVHGAYSAGVMAA 455
G G+ Y+ + P+ LFF GE + +VHGA +G+ A
Sbjct: 593 VAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 54 VVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSGDNSV 113
V LLE+RDR+GGR+ T D+GA + G+ NP+A + +++ + L +
Sbjct: 133 VTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAKIK----- 186
Query: 114 LYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTNDMSVL-------- 165
+ LY+ +G V KE V + F R+L T + H D +VL
Sbjct: 187 ------QKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYL--SHQLDFNVLNNKPVSLG 238
Query: 166 QAISIVL 172
QA+ +V+
Sbjct: 239 QALEVVI 245
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 155/299 (51%), Gaps = 32/299 (10%)
Query: 186 EVLQWYICRMEAWFAVDADMISLKCWDQEQ--VLSGGHGLMVQGYDPVIKALSKDIDIRL 243
++L W+ +E A +SLK WDQ+ +G H + GY V AL++ +DI+L
Sbjct: 405 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 464
Query: 244 NQRVTKI---SNGCNKVMV-TVEDGRNFV--ADAAIVTVPLGILKAN--LIQFEPKLPEW 295
N V ++ ++GC + V T + F+ DA + T+PLG+LK +QF P LPEW
Sbjct: 465 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 524
Query: 296 KLSAIADIGVGNENKIALRFDNVFW-PNVELLGVVAPTSYACG---YFLNLHKATGHPVL 351
K SA+ +G GN NK+ L FD VFW P+V L G V T+ + G F NL+KA P+L
Sbjct: 525 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKA---PIL 581
Query: 352 VYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDAT--EPVQYLVSRWGTDPNTLGCYSY 409
+ + AG A +E +SD+ + LK +F + +P + +VSRW DP G YSY
Sbjct: 582 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSY 641
Query: 410 DVVGMPGDLYERLRAPLG-------------NLFFGGEAVSMEHQGSVHGAYSAGVMAA 455
G G+ Y+ + P+ LFF GE + +VHGA +G+ A
Sbjct: 642 VAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 700
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 54 VVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSGDNSV 113
V LLE+RDR+GGR+ T D+GA + G+ NP+A + +++ + L +
Sbjct: 182 VTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAKIK----- 235
Query: 114 LYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTNDMSVL-------- 165
+ LY+ +G V KE V + F R+L T + H D +VL
Sbjct: 236 ------QKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYL--SHQLDFNVLNNKPVSLG 287
Query: 166 QAISIVL 172
QA+ +V+
Sbjct: 288 QALEVVI 294
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 155/299 (51%), Gaps = 32/299 (10%)
Query: 186 EVLQWYICRMEAWFAVDADMISLKCWDQEQ--VLSGGHGLMVQGYDPVIKALSKDIDIRL 243
++L W+ +E A +SLK WDQ+ +G H + GY V AL++ +DI+L
Sbjct: 356 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 415
Query: 244 NQRVTKI---SNGCNKVMV-TVEDGRNFV--ADAAIVTVPLGILKAN--LIQFEPKLPEW 295
N V ++ ++GC + V T + F+ DA + T+PLG+LK +QF P LPEW
Sbjct: 416 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 475
Query: 296 KLSAIADIGVGNENKIALRFDNVFW-PNVELLGVVAPTSYACG---YFLNLHKATGHPVL 351
K SA+ +G GN NK+ L FD VFW P+V L G V T+ + G F NL+KA P+L
Sbjct: 476 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKA---PIL 532
Query: 352 VYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDAT--EPVQYLVSRWGTDPNTLGCYSY 409
+ + AG A +E +SD+ + LK +F + +P + +VSRW DP G YSY
Sbjct: 533 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSY 592
Query: 410 DVVGMPGDLYERLRAPLG-------------NLFFGGEAVSMEHQGSVHGAYSAGVMAA 455
G G+ Y+ + P+ LFF GE + +VHGA +G+ A
Sbjct: 593 VAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 54 VVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSGDNSV 113
V LLE+RDR+GGR+ T D+GA + G+ NP+A + +++ + L +
Sbjct: 133 VTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAKIK----- 186
Query: 114 LYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTNDMSVL-------- 165
+ LY+ +G V KE V + F R+L T + H D +VL
Sbjct: 187 ------QKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYL--SHQLDFNVLNNKPVSLG 238
Query: 166 QAISIVL 172
QA+ +V+
Sbjct: 239 QALEVVI 245
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 159 bits (401), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 155/299 (51%), Gaps = 32/299 (10%)
Query: 186 EVLQWYICRMEAWFAVDADMISLKCWDQEQ--VLSGGHGLMVQGYDPVIKALSKDIDIRL 243
++L W+ +E A +SLK WDQ+ +G H + GY V AL++ +DI+L
Sbjct: 409 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 468
Query: 244 NQRVTKI---SNGCNKVMV-TVEDGRNFV--ADAAIVTVPLGILKAN--LIQFEPKLPEW 295
N V ++ ++GC + V T + F+ DA + T+PLG+LK +QF P LPEW
Sbjct: 469 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 528
Query: 296 KLSAIADIGVGNENKIALRFDNVFW-PNVELLGVVAPTSYACG---YFLNLHKATGHPVL 351
K SA+ +G GN NK+ L FD VFW P+V L G V T+ + G F NL+KA P+L
Sbjct: 529 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKA---PIL 585
Query: 352 VYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDAT--EPVQYLVSRWGTDPNTLGCYSY 409
+ + AG A +E +SD+ + LK +F + +P + +VSRW DP G YSY
Sbjct: 586 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSY 645
Query: 410 DVVGMPGDLYERLRAPLG-------------NLFFGGEAVSMEHQGSVHGAYSAGVMAA 455
G G+ Y+ + P+ LFF GE + +VHGA +G+ A
Sbjct: 646 VAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 704
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 18/127 (14%)
Query: 54 VVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSGDNSV 113
V LLE+RDR+GGR+ T D+GA + G+ NP+A + +++ + L +
Sbjct: 182 VTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAKIK-QKCP 239
Query: 114 LYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTNDMSVL-------- 165
LY+ + ++ D KV KE V + F R+L T + H D +VL
Sbjct: 240 LYEANGQA------DTVKVPKEKDEMVEQEFNRLLEATSYL--SHQLDFNVLNNKPVSLG 291
Query: 166 QAISIVL 172
QA+ +V+
Sbjct: 292 QALEVVI 298
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 158 bits (400), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 155/299 (51%), Gaps = 32/299 (10%)
Query: 186 EVLQWYICRMEAWFAVDADMISLKCWDQEQ--VLSGGHGLMVQGYDPVIKALSKDIDIRL 243
++L W+ +E A +SLK WDQ+ +G H + GY V AL++ +DI+L
Sbjct: 527 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 586
Query: 244 NQRVTKI---SNGCNKVMV-TVEDGRNFV--ADAAIVTVPLGILKAN--LIQFEPKLPEW 295
N V ++ ++GC + V T + F+ DA + T+PLG+LK +QF P LPEW
Sbjct: 587 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 646
Query: 296 KLSAIADIGVGNENKIALRFDNVFW-PNVELLGVVAPTSYACG---YFLNLHKATGHPVL 351
K SA+ +G GN NK+ L FD VFW P+V L G V T+ + G F NL+KA P+L
Sbjct: 647 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKA---PIL 703
Query: 352 VYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDAT--EPVQYLVSRWGTDPNTLGCYSY 409
+ + AG A +E +SD+ + LK +F + +P + +VSRW DP G YSY
Sbjct: 704 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSY 763
Query: 410 DVVGMPGDLYERLRAPLG-------------NLFFGGEAVSMEHQGSVHGAYSAGVMAA 455
G G+ Y+ + P+ LFF GE + +VHGA +G+ A
Sbjct: 764 VAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 822
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 54 VVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSGDNSV 113
V LLE+RDR+GGR+ T D+GA + G+ NP+A + +++ + L +
Sbjct: 304 VTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAKIK----- 357
Query: 114 LYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTNDMSVL-------- 165
+ LY+ +G V KE V + F R+L T + H D +VL
Sbjct: 358 ------QKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYL--SHQLDFNVLNNKPVSLG 409
Query: 166 QAISIVL 172
QA+ +V+
Sbjct: 410 QALEVVI 416
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 212/447 (47%), Gaps = 49/447 (10%)
Query: 54 VVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGV--CNENPLAPLIRR-LGLTLYRTSGD 110
+++LE+ D +GGR+H G V++GA+W+ GV NP+ P++ L L +R+ D
Sbjct: 31 LLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFD 90
Query: 111 --NSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTNDMSVLQAI 168
+Y D +YD D + E+A V E+ +++ + + +DMS+L
Sbjct: 91 YLAQNVYKEDG---GVYDEDYVQKRIELADSVEEMGEKL---SATLHASGRDDMSIL--- 141
Query: 169 SIVLDRHPELRQEGLAYEV---LQWYICRMEAWFAVDADMISLKCWDQEQVLS--GGHGL 223
+ R E + G A V + +Y E FA + SL+ S G
Sbjct: 142 --AMQRLNEHQPNGPATPVDMVVDYYKFDYE--FAEPPRVTSLQNTVPLATFSDFGDDVY 197
Query: 224 MV---QGYDPVIKALSK-------------DIDIRLNQRVTKISNGCNKVMVTVEDGRNF 267
V +GY+ V+ L+ D ++LN+ V +I V V ED +
Sbjct: 198 FVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVY 257
Query: 268 VADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLG 327
AD +V+ LG+L+++LIQF+PKLP WK+ AI + KI L+F FWP +
Sbjct: 258 SADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGRE 317
Query: 328 VVAPTSYACGYFLNLHK-ATGHP---VLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMF 383
S GY+ + +P VL+ + +E+ SDE +M L+KMF
Sbjct: 318 FFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMF 377
Query: 384 P--DATEPVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQ 441
P D + LV RW +D G +S VG+ Y++LRAP+G ++F GE S +
Sbjct: 378 PGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYN 437
Query: 442 GSVHGAYSAGVMAAQ---NC-QKYLLK 464
G VHGAY +G+ +A+ NC QK + K
Sbjct: 438 GYVHGAYLSGIDSAEILINCAQKKMCK 464
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 144 bits (364), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 211/447 (47%), Gaps = 49/447 (10%)
Query: 54 VVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGV--CNENPLAPLIRR-LGLTLYRTSGD 110
+++LE+ D +GGR+H G V++GA+W+ GV NP+ P++ L L +R+ D
Sbjct: 31 LLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFD 90
Query: 111 --NSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTNDMSVLQAI 168
+Y D +YD D + E+A V E+ +++ + + +DMS+L
Sbjct: 91 YLAQNVYKEDG---GVYDEDYVQKRIELADSVEEMGEKL---SATLHASGRDDMSIL--- 141
Query: 169 SIVLDRHPELRQEGLAYEV---LQWYICRMEAWFAVDADMISLKCWDQEQVLS--GGHGL 223
+ R E + G A V + +Y E FA + SL+ S G
Sbjct: 142 --AMQRLNEHQPNGPATPVDMVVDYYKFDYE--FAEPPRVTSLQNTVPLATFSDFGDDVY 197
Query: 224 MV---QGYDPVIKALSK-------------DIDIRLNQRVTKISNGCNKVMVTVEDGRNF 267
V +GY+ V+ L+ D ++LN+ V +I V V ED +
Sbjct: 198 FVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVY 257
Query: 268 VADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLG 327
AD +V+ LG+L+++LIQF+PKLP WK+ AI + I L+F FWP +
Sbjct: 258 SADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTMIFLKFPRKFWPEGKGRE 317
Query: 328 VVAPTSYACGYFLNLHK-ATGHP---VLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMF 383
S GY+ + +P VL+ + +E+ SDE +M L+KMF
Sbjct: 318 FFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMF 377
Query: 384 P--DATEPVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQ 441
P D + LV RW +D G +S VG+ Y++LRAP+G ++F GE S +
Sbjct: 378 PGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYN 437
Query: 442 GSVHGAYSAGVMAAQ---NC-QKYLLK 464
G VHGAY +G+ +A+ NC QK + K
Sbjct: 438 GYVHGAYLSGIDSAEILINCAQKKMCK 464
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 114/481 (23%), Positives = 189/481 (39%), Gaps = 96/481 (19%)
Query: 55 VLLESRDRLGGRIHTDYSF-GCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSGDNSV 113
++LE+RDR+GGR+ T + G D+GASW H NPL + L+L G
Sbjct: 36 LVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPL--FLEEAQLSL--NDGRTRF 90
Query: 114 LYDHDLESYALYDMDGNKVE--KEMAIKVGEIFKRILNETQKVRDEHTNDMSVLQAI-SI 170
++D D ++ D + +V+ KE+ +++ + E + + +D S Q +
Sbjct: 91 VFDDD--NFIYIDEERGRVDHDKELLLEIVDNEMSKFAELEFHQHLGVSDCSFFQLVMKY 148
Query: 171 VLDRHPELRQEGLAYEVLQWYICR-MEAWFAVDADMISLKCWDQEQVLSGGHGLMVQGYD 229
+L R L + + Y +CR +E W +D ++S K G YD
Sbjct: 149 LLQRRQFLTNDQIRYLP---QLCRYLELWHGLDWKLLSAK---DTYFGHQGRAAFALNYD 202
Query: 230 PVIKALSKDID---IRLNQRVTKISNGCNK-VMVTVEDGRNFVADAAIVTVPLGILKANL 285
V++ +++ ++L+ V I+ +K V V EDG + AD I+TVP +L ++
Sbjct: 203 SVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSV 262
Query: 286 ---------IQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNV------------E 324
I+F+P L A I G K+ F+ W N E
Sbjct: 263 QPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNE 322
Query: 325 LLGVV-------------------APTSYACG----YFLNLHKATGHPVLVYMAAGRFAY 361
+ +V TS C +F+NL K+TG + +
Sbjct: 323 FVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTN 382
Query: 362 DLEKLSDESAANFVMMQ---------------LKKMFP-----DATEPV--QYLVSRWGT 399
+E + ++ F Q + M P +A +PV +VS W
Sbjct: 383 HIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTR 442
Query: 400 DPNTLGCYSYDVVGMPGDLYERLRAPLGN-----LFFGGEAVSMEHQGSVHGAYSAGVMA 454
DP + G YS PGD + + N + F GE M+ G +GA+ +G
Sbjct: 443 DPYSRGAYS---ACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGRRE 499
Query: 455 A 455
A
Sbjct: 500 A 500
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 114/481 (23%), Positives = 189/481 (39%), Gaps = 96/481 (19%)
Query: 55 VLLESRDRLGGRIHTDYSF-GCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSGDNSV 113
++LE+RDR+GGR+ T + G D+GASW H NPL + L+L G
Sbjct: 36 LVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPL--FLEEAQLSL--NDGRTRF 90
Query: 114 LYDHDLESYALYDMDGNKVE--KEMAIKVGEIFKRILNETQKVRDEHTNDMSVLQAI-SI 170
++D D ++ D + +V+ KE+ +++ + E + + +D S Q +
Sbjct: 91 VFDDD--NFIYIDEERGRVDHDKELLLEIVDNEMSKFAELEFHQHLGVSDCSFFQLVMKY 148
Query: 171 VLDRHPELRQEGLAYEVLQWYICR-MEAWFAVDADMISLKCWDQEQVLSGGHGLMVQGYD 229
+L R L + + Y +CR +E W +D ++S K G YD
Sbjct: 149 LLQRRQFLTNDQIRYLP---QLCRYLELWHGLDWKLLSAK---DTYFGHQGRNAFALNYD 202
Query: 230 PVIKALSKDID---IRLNQRVTKISNGCNK-VMVTVEDGRNFVADAAIVTVPLGILKANL 285
V++ +++ ++L+ V I+ +K V V EDG + AD I+TVP +L ++
Sbjct: 203 SVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSV 262
Query: 286 ---------IQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNV------------E 324
I+F+P L A I G K+ F+ W N E
Sbjct: 263 QPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNE 322
Query: 325 LLGVV-------------------APTSYACG----YFLNLHKATGHPVLVYMAAGRFAY 361
+ +V TS C +F+NL K+TG + +
Sbjct: 323 FVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTN 382
Query: 362 DLEKLSDESAANFVMMQ---------------LKKMFP-----DATEPV--QYLVSRWGT 399
+E + ++ F Q + M P +A +PV +VS W
Sbjct: 383 HIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTR 442
Query: 400 DPNTLGCYSYDVVGMPGDLYERLRAPLGN-----LFFGGEAVSMEHQGSVHGAYSAGVMA 454
DP + G YS PGD + + N + F GE M+ G +GA+ +G
Sbjct: 443 DPYSRGAYS---ACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGRRE 499
Query: 455 A 455
A
Sbjct: 500 A 500
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 114/481 (23%), Positives = 189/481 (39%), Gaps = 96/481 (19%)
Query: 55 VLLESRDRLGGRIHTDYSF-GCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSGDNSV 113
++LE+RDR+GGR+ T + G D+GASW H NPL + L+L G
Sbjct: 36 LVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPL--FLEEAQLSL--NDGRTRF 90
Query: 114 LYDHDLESYALYDMDGNKVE--KEMAIKVGEIFKRILNETQKVRDEHTNDMSVLQAI-SI 170
++D D ++ D + +V+ KE+ +++ + E + + +D S Q +
Sbjct: 91 VFDDD--NFIYIDEERGRVDHDKELLLEIVDNEMSKFAELEFHQHLGVSDCSFFQLVMKY 148
Query: 171 VLDRHPELRQEGLAYEVLQWYICR-MEAWFAVDADMISLKCWDQEQVLSGGHGLMVQGYD 229
+L R L + + Y +CR +E W +D ++S K G YD
Sbjct: 149 LLQRRQFLTNDQIRYLP---QLCRYLELWHGLDWKLLSAK---DTYFGHQGRNAFALNYD 202
Query: 230 PVIKALSKDID---IRLNQRVTKISNGCNK-VMVTVEDGRNFVADAAIVTVPLGILKANL 285
V++ +++ ++L+ V I+ +K V V EDG + AD I+TVP +L ++
Sbjct: 203 SVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSV 262
Query: 286 ---------IQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNV------------E 324
I+F+P L A I G K+ F+ W N E
Sbjct: 263 QPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNE 322
Query: 325 LLGVV-------------------APTSYACG----YFLNLHKATGHPVLVYMAAGRFAY 361
+ +V TS C +F+NL K+TG + +
Sbjct: 323 FVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTN 382
Query: 362 DLEKLSDESAANFVMMQ---------------LKKMFP-----DATEPV--QYLVSRWGT 399
+E + ++ F Q + M P +A +PV +VS W
Sbjct: 383 HIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTR 442
Query: 400 DPNTLGCYSYDVVGMPGDLYERLRAPLGN-----LFFGGEAVSMEHQGSVHGAYSAGVMA 454
DP + G YS PGD + + N + F GE M+ G +GA+ +G
Sbjct: 443 DPYSRGAYS---ACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGRRE 499
Query: 455 A 455
A
Sbjct: 500 A 500
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 114/481 (23%), Positives = 189/481 (39%), Gaps = 96/481 (19%)
Query: 55 VLLESRDRLGGRIHTDYSF-GCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSGDNSV 113
++LE+RDR+GGR+ T + G D+GASW H NPL + L+L G
Sbjct: 36 LVLEARDRVGGRLQTVTGYQGRKYDIGASW-HQDTLTNPL--FLEEAQLSL--NDGRTRF 90
Query: 114 LYDHDLESYALYDMDGNKVE--KEMAIKVGEIFKRILNETQKVRDEHTNDMSVLQAI-SI 170
++D D ++ D + +V+ KE+ +++ + E + + +D S Q +
Sbjct: 91 VFDDD--NFIYIDEERGRVDHDKELLLEIVDNEMSKFAELEFHQHLGVSDCSFFQLVMKY 148
Query: 171 VLDRHPELRQEGLAYEVLQWYICR-MEAWFAVDADMISLKCWDQEQVLSGGHGLMVQGYD 229
+L R L + + Y +CR +E W +D ++S K G YD
Sbjct: 149 LLQRRQFLTNDQIRYLP---QLCRYLELWHGLDWKLLSAK---DTYFGHQGRNAFALNYD 202
Query: 230 PVIKALSKDID---IRLNQRVTKISNGCNK-VMVTVEDGRNFVADAAIVTVPLGILKANL 285
V++ +++ ++L+ V I+ +K V V EDG + AD I+TVP +L ++
Sbjct: 203 SVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSV 262
Query: 286 ---------IQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNV------------E 324
I+F+P L A I G K+ F+ W N E
Sbjct: 263 QPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNE 322
Query: 325 LLGVV-------------------APTSYACG----YFLNLHKATGHPVLVYMAAGRFAY 361
+ +V TS C +F+NL K+TG + +
Sbjct: 323 FVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTN 382
Query: 362 DLEKLSDESAANFVMMQ---------------LKKMFP-----DATEPV--QYLVSRWGT 399
+E + ++ F Q + M P +A +PV +VS W
Sbjct: 383 HIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTR 442
Query: 400 DPNTLGCYSYDVVGMPGDLYERLRAPLGN-----LFFGGEAVSMEHQGSVHGAYSAGVMA 454
DP + G YS PGD + + N + F GE M+ G +GA+ +G
Sbjct: 443 DPYSRGAYS---ACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGRRE 499
Query: 455 A 455
A
Sbjct: 500 A 500
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 112/481 (23%), Positives = 185/481 (38%), Gaps = 96/481 (19%)
Query: 55 VLLESRDRLGGRIHTDYSF-GCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSGDNSV 113
++LE+RDR+GGR+ T + G D+GASW H NPL + L+L G
Sbjct: 36 LVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPL--FLEEAQLSL--NDGRTRF 90
Query: 114 LYDHDLESYALYDMDGNKVE--KEMAIKVGEIFKRILNETQKVRDEHTNDMSVLQAI-SI 170
++D D ++ D + +V+ KE+ +++ + E + + +D S Q +
Sbjct: 91 VFDDD--NFIYIDEERGRVDHDKELLLEIVDNEXSKFAELEFHQHLGVSDCSFFQLVXKY 148
Query: 171 VLDRHPELRQEGLAYEVLQWYICR-MEAWFAVDADMISLKCWDQEQVLSGGHGLMVQGYD 229
+L R L + + Y +CR +E W +D ++S K G YD
Sbjct: 149 LLQRRQFLTNDQIRYLP---QLCRYLELWHGLDWKLLSAK---DTYFGHQGRNAFALNYD 202
Query: 230 PVIKALSKDID---IRLNQRVTKISNGCNK-VMVTVEDGRNFVADAAIVTVPLGILKANL 285
V++ +++ ++L+ V I+ +K V V EDG + AD I+TVP +L ++
Sbjct: 203 SVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSV 262
Query: 286 ---------IQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNV------------E 324
I+F+P L A I G K+ F+ W N E
Sbjct: 263 QPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNE 322
Query: 325 LLGVV-------------------APTSYACG----YFLNLHKATGHPVLVYMAAGRFAY 361
+ +V TS C +F+NL K+TG +
Sbjct: 323 FVEIVRNAENLDELDSXLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFXXLXQAPLTN 382
Query: 362 DLEKLSDESAANFVMMQ--LKKM------------------FPDATEPV--QYLVSRWGT 399
+E + ++ F Q L K+ +A +PV +VS W
Sbjct: 383 HIESIREDKERLFSFFQPVLNKIXKCLDSEDVIDGXRPIENIANANKPVLRNIIVSNWTR 442
Query: 400 DPNTLGCYSYDVVGMPGD-----LYERLRAPLGNLFFGGEAVSMEHQGSVHGAYSAGVMA 454
DP + G YS PGD + + F GE + G +GA+ +G
Sbjct: 443 DPYSRGAYS---ACFPGDDPVDXVVAXSNGQDSRIRFAGEHTIXDGAGCAYGAWESGRRE 499
Query: 455 A 455
A
Sbjct: 500 A 500
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 101/449 (22%), Positives = 167/449 (37%), Gaps = 72/449 (16%)
Query: 50 ASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLH----GVCNE-------NPLAP--- 95
A FK +LLE+RDR+GGR + G P +MG +W+H V E N L+P
Sbjct: 61 AGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPSFN 120
Query: 96 LIRRLGLTLYRTSGDNSVLYDHDLES-------YALYDMDGNKVEKEMAIK-----VGEI 143
R + RT+ S H+ E + ++DG + V E
Sbjct: 121 FSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEF 180
Query: 144 FK----RILNETQKVRDEHT-NDMSVLQAISIVLDRHPELRQEGLAYEVLQWYI------ 192
K ++RDE + N+ S L+A I+L L E L W+
Sbjct: 181 RKYDEMSYSERIDQIRDELSLNERSSLEAF-ILLCSGGTLENSSFG-EFLHWWAMSGYTY 238
Query: 193 -----CRMEAWFAVDADMISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRV 247
C M F + + W++ + G G + + ++++ +N+R
Sbjct: 239 QGCMDCLMSYKFKDGQSAFARRFWEE----AAGTGRLGYVFGCPVRSV-------VNER- 286
Query: 248 TKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGN 307
+ VT DGR FVA + T+PL +L + IQF P L ++SA+ V
Sbjct: 287 -------DAARVTARDGREFVAKRVVCTIPLNVL--STIQFSPALSTERISAMQAGHVSM 337
Query: 308 ENKIALRFDNVFWPNVELLGVVAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLS 367
K+ DN G+ P + C + G+ LV F D +
Sbjct: 338 CTKVHAEVDNK--DMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVC-----FGTDANHIQ 390
Query: 368 DESAANFVMMQLKKMFPDATEPVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLG 427
+ + + ++ P + + W D G + + GM + + LR G
Sbjct: 391 PDEDVRETLKAVGQLAPGTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHG 450
Query: 428 NLFFGGEAVSMEHQGSVHGAYSAGVMAAQ 456
+ F ++ + + GA G AA+
Sbjct: 451 GVVFANSDWALGWRSFIDGAIEEGTRAAR 479
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 101/449 (22%), Positives = 167/449 (37%), Gaps = 72/449 (16%)
Query: 50 ASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLH----GVCNE-------NPLAP--- 95
A FK +LLE+RDR+GGR + G P +MG +W+H V E N L+P
Sbjct: 61 AGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPSFN 120
Query: 96 LIRRLGLTLYRTSGDNSVLYDHDLES-------YALYDMDGNKVEKEMAIK-----VGEI 143
R + RT+ S H+ E + ++DG + V E
Sbjct: 121 FSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEF 180
Query: 144 FK----RILNETQKVRDEHT-NDMSVLQAISIVLDRHPELRQEGLAYEVLQWYI------ 192
K ++RDE + N+ S L+A I+L L E L W+
Sbjct: 181 RKYDEMSYSERIDQIRDELSLNERSSLEAF-ILLCSGGTLENSSFG-EFLHWWAMSGYTY 238
Query: 193 -----CRMEAWFAVDADMISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRV 247
C M F + + W++ + G G + + ++++ +N+R
Sbjct: 239 QGCMDCLMSYKFKDGQSAFARRFWEE----AAGTGRLGYVFGCPVRSV-------VNER- 286
Query: 248 TKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGN 307
+ VT DGR FVA + T+PL +L + IQF P L ++SA+ V
Sbjct: 287 -------DAARVTARDGREFVAKRVVCTIPLNVL--STIQFSPALSTERISAMQAGHVSM 337
Query: 308 ENKIALRFDNVFWPNVELLGVVAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLS 367
K+ DN G+ P + C + G+ LV F D +
Sbjct: 338 CTKVHAEVDNK--DMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVC-----FGTDANHIQ 390
Query: 368 DESAANFVMMQLKKMFPDATEPVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLG 427
+ + + ++ P + + W D G + + GM + + LR G
Sbjct: 391 PDEDVRETLKAVGQLAPGTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHG 450
Query: 428 NLFFGGEAVSMEHQGSVHGAYSAGVMAAQ 456
+ F ++ + + GA G AA+
Sbjct: 451 GVVFANSDWALGWRSFIDGAIEEGTRAAR 479
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 100/449 (22%), Positives = 166/449 (36%), Gaps = 72/449 (16%)
Query: 50 ASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLH----GVCNE-------NPLAP--- 95
A FK +LLE+RDR+GGR + G P +MG +W+H V E N L+P
Sbjct: 61 AGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPSFN 120
Query: 96 LIRRLGLTLYRTSGDNSVLYDHDLES-------YALYDMDGNKVEKEMAIK-----VGEI 143
R + RT+ S H+ E + ++DG + V E
Sbjct: 121 FSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEF 180
Query: 144 FK----RILNETQKVRDEHT-NDMSVLQAISIVLDRHPELRQEGLAYEVLQWYI------ 192
K ++RDE + N+ S L+A I+L L E L W+
Sbjct: 181 RKYDEMSYSERIDQIRDELSLNERSSLEAF-ILLCSGGTLENSSFG-EFLHWWAMSGYTY 238
Query: 193 -----CRMEAWFAVDADMISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRV 247
C M F + + W++ + G G + + ++++ +N+R
Sbjct: 239 QGCMDCLMSYKFKDGQSAFARRFWEE----AAGTGRLGYVFGCPVRSV-------VNER- 286
Query: 248 TKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGN 307
+ VT DGR FVA + T+PL +L + IQF P L ++SA+ V
Sbjct: 287 -------DAARVTARDGREFVAKRVVCTIPLNVL--STIQFSPALSTERISAMQAGHVSM 337
Query: 308 ENKIALRFDNVFWPNVELLGVVAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLS 367
K+ DN G+ P + C + G+ LV F +
Sbjct: 338 CTKVHAEVDNK--DMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVC-----FGNSANHIQ 390
Query: 368 DESAANFVMMQLKKMFPDATEPVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLG 427
+ + + ++ P + + W D G + + GM + + LR G
Sbjct: 391 PDEDVRETLKAVGQLAPGTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHG 450
Query: 428 NLFFGGEAVSMEHQGSVHGAYSAGVMAAQ 456
+ F ++ + + GA G AA+
Sbjct: 451 GVVFANSDWALGWRSFIDGAIEEGTRAAR 479
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 106/250 (42%), Gaps = 16/250 (6%)
Query: 224 MVQGYDPVIKALSKDID--IRLNQRVTKISNGCNKVMVTVE----DGRNFVADAAIVTVP 277
+V G D + ++ + I+ ++ N RV KI N+V VT + D + AD IV
Sbjct: 236 IVGGMDQLPTSMYRAIEEKVKFNARVIKIQQNANQVTVTYQTPEKDTSSNTADYVIVCTT 295
Query: 278 LGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLGVVAPTSYACG 337
A IQFEP LP K A+ + + KI L + FW + + G + T
Sbjct: 296 S--RAARRIQFEPPLPPKKQHALRSVHYRSGTKIFLTCSSKFWEDDGIHGGKSTTDLPSR 353
Query: 338 --YFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDATEPVQ---- 391
Y+ N + +TG V++ G A + L + A+ V L + E +Q
Sbjct: 354 FIYYPNHNFSTGVGVIIAYGIGDDANFFQALKFKDCADIVFNDLSLIHQLPKEEIQSFCY 413
Query: 392 -YLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQGSVHGAYSA 450
++ +W D +G + E L AP G +FF GE + H G + +
Sbjct: 414 PSMIQKWSLDKYAMGAITTFTPYQFQRFSEALTAPQGRIFFAGEYTAEAH-GWIDSTIKS 472
Query: 451 GVMAAQNCQK 460
G+ AA++ +
Sbjct: 473 GLTAARDVNR 482
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/451 (22%), Positives = 181/451 (40%), Gaps = 48/451 (10%)
Query: 48 YDASFKVVLLESRDRLGGRIHTDYSFGCP-VDMGASWLHGVCNENPLAPLIRRLGLTLYR 106
+D+ VV+LE+RDR+GGR +T + VD+G S++ +N + L + LGL Y+
Sbjct: 24 HDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP--TQNRILRLAKELGLETYK 81
Query: 107 TSGDNSVLYDHDLESYALYD-----------MDGNKVEKEMAIKVGEI-----FKRILNE 150
+ +++ +SY +D N + M EI +K L E
Sbjct: 82 VNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAE 141
Query: 151 ------TQKVRDEHTNDMSVLQAISIVLDRHPELRQEGLAYEVLQWYICRMEAWFAVDAD 204
+++ D+ S Q ++ ++ ++ WY+ +
Sbjct: 142 EWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGG----TTR 197
Query: 205 MISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDG 264
+IS QE+ GG G Q + ++ L + +L + V I V+V +
Sbjct: 198 IISTTNGGQERKFVGGSG---QVSERIMDLLGDRV--KLERPVIYIDQTRENVLVETLNH 252
Query: 265 RNFVADAAIVTVP--LGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPN 322
+ A I +P LG+ I F P LP + I + +G+ K + + FW
Sbjct: 253 EMYEAKYVISAIPPTLGMK----IHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRK 308
Query: 323 VELLG--VVAPTSYACGYFLNLHKATGH--PVLVYMAAGRFAYDLEKLSDESAANFVMMQ 378
+ G ++ Y L+ K G+ ++ ++ A + A L +L+ E +
Sbjct: 309 KDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHK-ARKLARLTKEERLKKLCEL 367
Query: 379 LKKMFP--DATEPVQYLVSRWGTDPNTLGCYS-YDVVGMPGDLYERLRAPLGNLFFGGEA 435
K+ +A EPV Y W + + GCY+ Y G+ LR P+ ++F G
Sbjct: 368 YAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTE 427
Query: 436 VSMEHQGSVHGAYSAGVMAAQNCQKYLLKQP 466
+ G + GA AG AA+ + K P
Sbjct: 428 TATHWSGHMEGAVEAGERAAREILHAMGKIP 458
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/451 (22%), Positives = 181/451 (40%), Gaps = 48/451 (10%)
Query: 48 YDASFKVVLLESRDRLGGRIHTDYSFGCP-VDMGASWLHGVCNENPLAPLIRRLGLTLYR 106
+D+ VV+LE+RDR+GGR +T + VD+G S++ +N + L + LGL Y+
Sbjct: 23 HDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP--TQNRILRLAKELGLETYK 80
Query: 107 TSGDNSVLYDHDLESYALYD-----------MDGNKVEKEMAIKVGEI-----FKRILNE 150
+ +++ +SY +D N + M EI +K L E
Sbjct: 81 VNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAE 140
Query: 151 T------QKVRDEHTNDMSVLQAISIVLDRHPELRQEGLAYEVLQWYICRMEAWFAVDAD 204
+++ D+ S Q ++ ++ ++ WY+ +
Sbjct: 141 EWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGG----TTR 196
Query: 205 MISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDG 264
+IS QE+ GG G Q + ++ L + +L + V I V+V +
Sbjct: 197 IISTTNGGQERKFVGGSG---QVSERIMDLLGDRV--KLERPVIYIDQTRENVLVETLNH 251
Query: 265 RNFVADAAIVTVP--LGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPN 322
+ A I +P LG+ I F P LP + I + +G+ K + + FW
Sbjct: 252 EMYEAKYVISAIPPTLGMK----IHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRK 307
Query: 323 VELLG--VVAPTSYACGYFLNLHKATGH--PVLVYMAAGRFAYDLEKLSDESAANFVMMQ 378
+ G ++ Y L+ K G+ ++ ++ A + A L +L+ E +
Sbjct: 308 KDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHK-ARKLARLTKEERLKKLCEL 366
Query: 379 LKKMFP--DATEPVQYLVSRWGTDPNTLGCYS-YDVVGMPGDLYERLRAPLGNLFFGGEA 435
K+ +A EPV Y W + + GCY+ Y G+ LR P+ ++F G
Sbjct: 367 YAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTE 426
Query: 436 VSMEHQGSVHGAYSAGVMAAQNCQKYLLKQP 466
+ G + GA AG AA+ + K P
Sbjct: 427 TATHWSGYMEGAVEAGERAAREILHAMGKIP 457
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/451 (22%), Positives = 181/451 (40%), Gaps = 48/451 (10%)
Query: 48 YDASFKVVLLESRDRLGGRIHTDYSFGCP-VDMGASWLHGVCNENPLAPLIRRLGLTLYR 106
+D+ VV+LE+RDR+GGR +T + VD+G S++ +N + L + LGL Y+
Sbjct: 24 HDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP--TQNRILRLAKELGLETYK 81
Query: 107 TSGDNSVLYDHDLESYALYD-----------MDGNKVEKEMAIKVGEI-----FKRILNE 150
+ +++ +SY +D N + M EI +K L E
Sbjct: 82 VNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAE 141
Query: 151 ------TQKVRDEHTNDMSVLQAISIVLDRHPELRQEGLAYEVLQWYICRMEAWFAVDAD 204
+++ D+ S Q ++ ++ ++ WY+ +
Sbjct: 142 EWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGG----TTR 197
Query: 205 MISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDG 264
+IS QE+ GG G Q + ++ L + +L + V I V+V +
Sbjct: 198 IISTTNGGQERKFVGGSG---QVSERIMDLLGDRV--KLERPVIYIDQTRENVLVETLNH 252
Query: 265 RNFVADAAIVTVP--LGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPN 322
+ A I +P LG+ I F P LP + I + +G+ K + + FW
Sbjct: 253 EMYEAKYVISAIPPTLGMK----IHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRK 308
Query: 323 VELLG--VVAPTSYACGYFLNLHKATGH--PVLVYMAAGRFAYDLEKLSDESAANFVMMQ 378
+ G ++ Y L+ K G+ ++ ++ A + A L +L+ E +
Sbjct: 309 KDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHK-ARKLARLTKEERLKKLCEL 367
Query: 379 LKKMFP--DATEPVQYLVSRWGTDPNTLGCYS-YDVVGMPGDLYERLRAPLGNLFFGGEA 435
K+ +A EPV Y W + + GCY+ Y G+ LR P+ ++F G
Sbjct: 368 YAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTE 427
Query: 436 VSMEHQGSVHGAYSAGVMAAQNCQKYLLKQP 466
+ G + GA AG AA+ + K P
Sbjct: 428 TATHWSGFMEGAVEAGERAAREILHAMGKIP 458
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/451 (22%), Positives = 181/451 (40%), Gaps = 48/451 (10%)
Query: 48 YDASFKVVLLESRDRLGGRIHTDYSFGCP-VDMGASWLHGVCNENPLAPLIRRLGLTLYR 106
+D+ VV+LE+RDR+GGR +T + VD+G S++ +N + L + LGL Y+
Sbjct: 24 HDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP--TQNRILRLAKELGLETYK 81
Query: 107 TSGDNSVLYDHDLESYALYD-----------MDGNKVEKEMAIKVGEI-----FKRILNE 150
+ +++ +SY +D N + M EI +K L E
Sbjct: 82 VNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAE 141
Query: 151 ------TQKVRDEHTNDMSVLQAISIVLDRHPELRQEGLAYEVLQWYICRMEAWFAVDAD 204
+++ D+ S Q ++ ++ ++ WY+ +
Sbjct: 142 EWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGG----TTR 197
Query: 205 MISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDG 264
+IS QE+ GG G Q + ++ L + +L + V I V+V +
Sbjct: 198 IISTTNGGQERKFVGGSG---QVSERIMDLLGDRV--KLERPVIYIDQTRENVLVETLNH 252
Query: 265 RNFVADAAIVTVP--LGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPN 322
+ A I +P LG+ I F P LP + I + +G+ K + + FW
Sbjct: 253 EMYEAKYVISAIPPTLGMK----IHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRK 308
Query: 323 VELLG--VVAPTSYACGYFLNLHKATGH--PVLVYMAAGRFAYDLEKLSDESAANFVMMQ 378
+ G ++ Y L+ K G+ ++ ++ A + A L +L+ E +
Sbjct: 309 KDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHK-ARKLARLTKEERLKKLCEL 367
Query: 379 LKKMFP--DATEPVQYLVSRWGTDPNTLGCYS-YDVVGMPGDLYERLRAPLGNLFFGGEA 435
K+ +A EPV Y W + + GCY+ Y G+ LR P+ ++F G
Sbjct: 368 YAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTE 427
Query: 436 VSMEHQGSVHGAYSAGVMAAQNCQKYLLKQP 466
+ G + GA AG AA+ + K P
Sbjct: 428 TATHWSGYMEGAVEAGERAAREILHAMGKIP 458
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 102/451 (22%), Positives = 181/451 (40%), Gaps = 48/451 (10%)
Query: 48 YDASFKVVLLESRDRLGGRIHTDYSFGCP-VDMGASWLHGVCNENPLAPLIRRLGLTLYR 106
+D+ VV+LE+RDR+GGR +T + VD+G S++ +N + L + LGL Y+
Sbjct: 24 HDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP--TQNRILRLAKELGLETYK 81
Query: 107 TSGDNSVLYDHDLESYALYD-----------MDGNKVEKEMAIKVGEI-----FKRILNE 150
+ +++ +SY +D N + M EI +K L E
Sbjct: 82 VNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAE 141
Query: 151 ------TQKVRDEHTNDMSVLQAISIVLDRHPELRQEGLAYEVLQWYICRMEAWFAVDAD 204
+++ D+ S Q ++ ++ ++ WY+ +
Sbjct: 142 EWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGG----TTR 197
Query: 205 MISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDG 264
+IS QE+ GG G Q + ++ L + +L + V I V+V +
Sbjct: 198 IISTTNGGQERKFVGGSG---QVSERIMDLLGDRV--KLERPVIYIDQTRENVLVETLNH 252
Query: 265 RNFVADAAIVTVP--LGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPN 322
+ A I +P LG+ I F P LP + I + +G+ K + + FW
Sbjct: 253 EMYEAKYVISAIPPTLGMK----IHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRK 308
Query: 323 VELLG--VVAPTSYACGYFLNLHKATGH--PVLVYMAAGRFAYDLEKLSDESAANFVMMQ 378
+ G ++ Y L+ K G+ ++ ++ A + A L +L+ E +
Sbjct: 309 KDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHK-ARKLARLTKEERLKKLCEL 367
Query: 379 LKKMFP--DATEPVQYLVSRWGTDPNTLGCYS-YDVVGMPGDLYERLRAPLGNLFFGGEA 435
K+ +A EPV Y W + + GCY+ Y G+ LR P+ ++F G
Sbjct: 368 YAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTE 427
Query: 436 VSMEHQGSVHGAYSAGVMAAQNCQKYLLKQP 466
+ G + GA AG AA+ + K P
Sbjct: 428 TATHWSGLMEGAVEAGERAAREILHAMGKIP 458
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 102/451 (22%), Positives = 181/451 (40%), Gaps = 48/451 (10%)
Query: 48 YDASFKVVLLESRDRLGGRIHTDYSFGCP-VDMGASWLHGVCNENPLAPLIRRLGLTLYR 106
+D+ VV+LE+RDR+GGR +T + VD+G S++ +N + L + LGL Y+
Sbjct: 24 HDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP--TQNRILRLAKELGLETYK 81
Query: 107 TSGDNSVLYDHDLESYALYD-----------MDGNKVEKEMAIKVGEI-----FKRILNE 150
+ +++ +SY +D N + M EI +K L E
Sbjct: 82 VNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAE 141
Query: 151 ------TQKVRDEHTNDMSVLQAISIVLDRHPELRQEGLAYEVLQWYICRMEAWFAVDAD 204
+++ D+ S Q ++ ++ ++ WY+ +
Sbjct: 142 EWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGG----TTR 197
Query: 205 MISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDG 264
+IS QE+ GG G Q + ++ L + +L + V I V+V +
Sbjct: 198 IISTTNGGQERKFVGGSG---QVSERIMDLLGDRV--KLERPVIYIDQTRENVLVETLNH 252
Query: 265 RNFVADAAIVTVP--LGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPN 322
+ A I +P LG+ I F P LP + I + +G+ K + + FW
Sbjct: 253 EMYEAKYVISAIPPTLGMK----IHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRK 308
Query: 323 VELLG--VVAPTSYACGYFLNLHKATGH--PVLVYMAAGRFAYDLEKLSDESAANFVMMQ 378
+ G ++ Y L+ K G+ ++ ++ A + A L +L+ E +
Sbjct: 309 KDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHK-ARKLARLTKEERLKKLCEL 367
Query: 379 LKKMFP--DATEPVQYLVSRWGTDPNTLGCYS-YDVVGMPGDLYERLRAPLGNLFFGGEA 435
K+ +A EPV Y W + + GCY+ Y G+ LR P+ ++F G
Sbjct: 368 YAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTE 427
Query: 436 VSMEHQGSVHGAYSAGVMAAQNCQKYLLKQP 466
+ G + GA AG AA+ + K P
Sbjct: 428 TATHWSGWMEGAVEAGERAAREILHAMGKIP 458
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 101/451 (22%), Positives = 180/451 (39%), Gaps = 48/451 (10%)
Query: 48 YDASFKVVLLESRDRLGGRIHTDYSFGCP-VDMGASWLHGVCNENPLAPLIRRLGLTLYR 106
+D+ VV+LE+RDR+GGR +T + VD+G S++ +N + L + LGL Y+
Sbjct: 24 HDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP--TQNRILRLAKELGLETYK 81
Query: 107 TSGDNSVLYDHDLESYALYD-----------MDGNKVEKEMAIKVGEI-----FKRILNE 150
+ +++ +SY +D N + M EI +K L E
Sbjct: 82 VNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAE 141
Query: 151 ------TQKVRDEHTNDMSVLQAISIVLDRHPELRQEGLAYEVLQWYICRMEAWFAVDAD 204
+++ D+ S Q ++ ++ ++ WY+ +
Sbjct: 142 EWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGG----TTR 197
Query: 205 MISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDG 264
+ S QE+ GG G Q + ++ L + +L + V I V+V +
Sbjct: 198 IFSTTNGGQERKFVGGSG---QVSERIMDLLGDRV--KLERPVIYIDQTRENVLVETLNH 252
Query: 265 RNFVADAAIVTVP--LGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPN 322
+ A I +P LG+ I F P LP + I + +G+ K + + FW
Sbjct: 253 EMYEAKYVISAIPPTLGMK----IHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRK 308
Query: 323 VELLG--VVAPTSYACGYFLNLHKATGH--PVLVYMAAGRFAYDLEKLSDESAANFVMMQ 378
+ G ++ Y L+ K G+ ++ ++ A + A L +L+ E +
Sbjct: 309 KDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHK-ARKLARLTKEERLKKLCEL 367
Query: 379 LKKMFP--DATEPVQYLVSRWGTDPNTLGCYS-YDVVGMPGDLYERLRAPLGNLFFGGEA 435
K+ +A EPV Y W + + GCY+ Y G+ LR P+ ++F G
Sbjct: 368 YAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTE 427
Query: 436 VSMEHQGSVHGAYSAGVMAAQNCQKYLLKQP 466
+ G + GA AG AA+ + K P
Sbjct: 428 TATHWSGYMEGAVEAGERAAREILHAMGKIP 458
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
Oxidase From Arthrobacter Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
With Substrate Bound At Active Site And Inhibitor At
Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
Methylmyosmine Product Formed During Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
Length = 431
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 107/419 (25%), Positives = 177/419 (42%), Gaps = 49/419 (11%)
Query: 49 DASFKVVLLESRDRLGGRIHTDYSFGCP---VDMGASWLHGVCNENP-LAPLIRRLGLTL 104
+A KV+LLE +RLGGR ++ S P V++G ++LH +P LA + R G+
Sbjct: 22 NAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLH--RKHHPRLAAELDRYGIPT 79
Query: 105 YRTSGDNSVLYDHDLESYAL---YDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTND 161
S S + H L A+ + + G++ A+ V +L + ++ E +
Sbjct: 80 AAASEFTS--FRHRLGPTAVDQAFPIPGSE-----AVAVEAATYTLLRDAHRIDLEKGLE 132
Query: 162 MSVLQAISIVLDRH-------PELRQEGLAYEVLQWYICRMEAWFAVDADMISLKCWDQE 214
L+ + I L+ + P RQ LA+ W + A A M+ L
Sbjct: 133 NQDLEDLDIPLNEYVDKLDLPPVSRQFLLAW---AWNMLGQPADQASALWMLQLVAAHHY 189
Query: 215 QVLSGGHGL---MVQGYDPVIKALSKDI-DIRLNQRVTKISNGCNKVMVTVEDGRNFVAD 270
+L L G ++ A+S++I +IRL VT I + V VTV+DG F A
Sbjct: 190 SILGVVLSLDEVFSNGSADLVDAMSQEIPEIRLQTVVTGIDQSGDVVNVTVKDGHAFQAH 249
Query: 271 AAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLG-VV 329
+ IV P+ + I F P LPE + S I + G KI + +E +G +
Sbjct: 250 SVIVATPMNTWRR--IVFTPALPERRRSVIEEGHGGQGLKILIHVRGA-EAGIECVGDGI 306
Query: 330 APTSYACGYFLNLHKATGHPVLVYMAAGRF-AYDLEKLSDESAANFVMMQLKKMFPDATE 388
PT Y + ++ + +G F D+ + D A + + +++ + D +
Sbjct: 307 FPTLYDYCEVSESERL----LVAFTDSGSFDPTDIGAVKD--AVLYYLPEVEVLGIDYHD 360
Query: 389 PVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQGSVHGA 447
W DP G + VG +++ L P G + F G VS+E G + GA
Sbjct: 361 --------WIADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVGSDVSLEFPGYIEGA 411
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 107/419 (25%), Positives = 177/419 (42%), Gaps = 49/419 (11%)
Query: 49 DASFKVVLLESRDRLGGRIHTDYSFGCP---VDMGASWLHGVCNENP-LAPLIRRLGLTL 104
+A KV+LLE +RLGGR ++ S P V++G ++LH +P LA + R G+
Sbjct: 22 NAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLH--RKHHPRLAAELDRYGIPT 79
Query: 105 YRTSGDNSVLYDHDLESYAL---YDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTND 161
S S + H L A+ + + G++ A+ V +L + ++ E +
Sbjct: 80 AAASEFTS--FRHRLGPTAVDQAFPIPGSE-----AVAVEAATYTLLRDAHRIDLEKGLE 132
Query: 162 MSVLQAISIVLDRH-------PELRQEGLAYEVLQWYICRMEAWFAVDADMISLKCWDQE 214
L+ + I L+ + P RQ LA+ W + A A M+ L
Sbjct: 133 NQDLEDLDIPLNEYVDKLDLPPVSRQFLLAW---AWNMLGQPADQASALWMLQLVAAHHY 189
Query: 215 QVLSGGHGL---MVQGYDPVIKALSKDI-DIRLNQRVTKISNGCNKVMVTVEDGRNFVAD 270
+L L G ++ A+S++I +IRL VT I + V VTV+DG F A
Sbjct: 190 SILGVVLSLDEVFSNGSADLVDAMSQEIPEIRLQTVVTGIDQSGDVVNVTVKDGHAFQAH 249
Query: 271 AAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLG-VV 329
+ IV P+ + I F P LPE + S I + G KI + +E +G +
Sbjct: 250 SVIVATPMNTWRR--IVFTPALPERRRSVIEEGHGGQGLKILIHVRGA-EAGIECVGDGI 306
Query: 330 APTSYACGYFLNLHKATGHPVLVYMAAGRF-AYDLEKLSDESAANFVMMQLKKMFPDATE 388
PT Y + ++ + +G F D+ + D A + + +++ + D +
Sbjct: 307 FPTLYDYCEVSESERL----LVAFTDSGSFDPTDIGAVKD--AVLYYLPEVEVLGIDYHD 360
Query: 389 PVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQGSVHGA 447
W DP G + VG +++ L P G + F G VS+E G + GA
Sbjct: 361 --------WIADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVGSDVSLEFPGYIEGA 411
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 101/451 (22%), Positives = 180/451 (39%), Gaps = 48/451 (10%)
Query: 48 YDASFKVVLLESRDRLGGRIHTDYSFGCP-VDMGASWLHGVCNENPLAPLIRRLGLTLYR 106
+D+ VV+LE+RDR+GGR +T + VD+G S++ +N + L + LGL Y+
Sbjct: 24 HDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP--TQNRILRLAKELGLETYK 81
Query: 107 TSGDNSVLYDHDLESYALYD-----------MDGNKVEKEMAIKVGEI-----FKRILNE 150
+ +++ +SY +D N + M EI +K L E
Sbjct: 82 VNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAE 141
Query: 151 T------QKVRDEHTNDMSVLQAISIVLDRHPELRQEGLAYEVLQWYICRMEAWFAVDAD 204
+++ D+ S Q ++ ++ ++ WY+ +
Sbjct: 142 EWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGG----TTR 197
Query: 205 MISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDG 264
+ S QE+ GG G Q + ++ L + +L + V I V+V +
Sbjct: 198 IASTTNGGQERKFVGGSG---QVSERIMDLLGDRV--KLERPVIYIDQTRENVLVETLNH 252
Query: 265 RNFVADAAIVTVP--LGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPN 322
+ A I +P LG+ I F P LP + I + +G+ K + + FW
Sbjct: 253 EMYEAKYVISAIPPTLGMK----IHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRK 308
Query: 323 VELLG--VVAPTSYACGYFLNLHKATGH--PVLVYMAAGRFAYDLEKLSDESAANFVMMQ 378
+ G ++ Y L+ K G+ ++ ++ A + A L +L+ E +
Sbjct: 309 KDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHK-ARKLARLTKEERLKKLCEL 367
Query: 379 LKKMFP--DATEPVQYLVSRWGTDPNTLGCYS-YDVVGMPGDLYERLRAPLGNLFFGGEA 435
K+ +A EPV Y W + + GCY+ Y G+ LR P+ ++F G
Sbjct: 368 YAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTE 427
Query: 436 VSMEHQGSVHGAYSAGVMAAQNCQKYLLKQP 466
+ G + GA AG AA+ + K P
Sbjct: 428 TATHWSGYMEGAVEAGERAAREILHAMGKIP 458
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 100/451 (22%), Positives = 179/451 (39%), Gaps = 48/451 (10%)
Query: 48 YDASFKVVLLESRDRLGGRIHTDYSFGCP-VDMGASWLHGVCNENPLAPLIRRLGLTLYR 106
+D+ VV+LE+RDR+GGR +T + VD+G S++ +N + L + LGL Y+
Sbjct: 23 HDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP--TQNRILRLAKELGLETYK 80
Query: 107 TSGDNSVLYDHDLESYALYD-----------MDGNKVEKEMAIKVGEI-----FKRILNE 150
+ +++ +SY +D N + M EI +K L E
Sbjct: 81 VNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAE 140
Query: 151 T------QKVRDEHTNDMSVLQAISIVLDRHPELRQEGLAYEVLQWYICRMEAWFAVDAD 204
+++ D+ S Q ++ ++ ++ WY+ +
Sbjct: 141 EWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGG----TTR 196
Query: 205 MISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDG 264
+ S QE+ GG G Q + ++ L + +L + V I V+V +
Sbjct: 197 IASTTNGGQERKFVGGSG---QVSERIMDLLGDRV--KLERPVIYIDQTRENVLVETLNH 251
Query: 265 RNFVADAAIVTVP--LGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPN 322
+ A I +P LG+ I F P LP + I + +G+ K + + FW
Sbjct: 252 EMYEAKYVISAIPPTLGMK----IHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRK 307
Query: 323 VELLG--VVAPTSYACGYFLNLHKATGH--PVLVYMAAGRFAYDLEKLSDESAANFVMMQ 378
+ G ++ L+ K G+ ++ ++ A + A L +L+ E +
Sbjct: 308 KDYCGTMIIDGEEAPVAATLDDTKPEGNYAAIMGFILAHK-ARKLARLTKEERLKKLCEL 366
Query: 379 LKKMFP--DATEPVQYLVSRWGTDPNTLGCYS-YDVVGMPGDLYERLRAPLGNLFFGGEA 435
K+ +A EPV Y W + + GCY+ Y G+ LR P+ ++F G
Sbjct: 367 YAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTE 426
Query: 436 VSMEHQGSVHGAYSAGVMAAQNCQKYLLKQP 466
+ G + GA AG AA+ + K P
Sbjct: 427 TATHWSGYMEGAVEAGERAAREILHAMGKIP 457
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 102/254 (40%), Gaps = 21/254 (8%)
Query: 213 QEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAA 272
QE+ GG G Q + ++ L + +LN VT + + +++ + ++
Sbjct: 204 QERKFVGGSG---QVSERIMDLLGDQV--KLNHPVTHVDQSSDNIIIETLNHEHYECKYV 258
Query: 273 IVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLGVV--- 329
I +P + I F P+LP + I + +G K + + FW + G +
Sbjct: 259 INAIPPTLTAK--IHFRPELPAERNQLIQRLPMGAVIKCMMYYKEAFWKKKDYCGCMIIE 316
Query: 330 ---APTSYACGYFLNLHKATGH-PVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMF-- 383
AP S L+ K G P ++ R A L KL E + K+
Sbjct: 317 DEDAPISIT----LDDTKPDGSLPAIMGFILARKADRLAKLHKEIRKKKICELYAKVLGS 372
Query: 384 PDATEPVQYLVSRWGTDPNTLGCYS-YDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQG 442
+A PV Y W + + GCY+ Y G+ +R P+G +FF G + + G
Sbjct: 373 QEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATKWSG 432
Query: 443 SVHGAYSAGVMAAQ 456
+ GA AG AA+
Sbjct: 433 YMEGAVEAGERAAR 446
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 13/61 (21%)
Query: 54 VVLLESRDRLGGRI------HTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRT 107
V++LE+RDR+GGR H DY VD+G +++ +N + L + LG+ Y+
Sbjct: 28 VLVLEARDRVGGRTYTIRNEHVDY-----VDVGGAYVGP--TQNRILRLSKELGIETYKV 80
Query: 108 S 108
+
Sbjct: 81 N 81
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 102/254 (40%), Gaps = 21/254 (8%)
Query: 213 QEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAA 272
QE+ GG G Q + ++ L + +LN VT + + +++ + ++
Sbjct: 215 QERKFVGGSG---QVSERIMDLLGDQV--KLNHPVTHVDQSSDNIIIETLNHEHYECKYV 269
Query: 273 IVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLGVV--- 329
I +P + I F P+LP + I + +G K + + FW + G +
Sbjct: 270 INAIPPTLTAK--IHFRPELPAERNQLIQRLPMGAVIKCMMYYKEAFWKKKDYCGCMIIE 327
Query: 330 ---APTSYACGYFLNLHKATGH-PVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMF-- 383
AP S L+ K G P ++ R A L KL E + K+
Sbjct: 328 DEDAPISIT----LDDTKPDGSLPAIMGFILARKADRLAKLHKEIRKKKICELYAKVLGS 383
Query: 384 PDATEPVQYLVSRWGTDPNTLGCYS-YDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQG 442
+A PV Y W + + GCY+ Y G+ +R P+G +FF G + + G
Sbjct: 384 QEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATKWSG 443
Query: 443 SVHGAYSAGVMAAQ 456
+ GA AG AA+
Sbjct: 444 YMEGAVEAGERAAR 457
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 13/61 (21%)
Query: 54 VVLLESRDRLGGRI------HTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRT 107
V++LE+RDR+GGR H DY VD+G +++ +N + L + LG+ Y+
Sbjct: 39 VLVLEARDRVGGRTYTIRNEHVDY-----VDVGGAYVGP--TQNRILRLSKELGIETYKV 91
Query: 108 S 108
+
Sbjct: 92 N 92
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 102/254 (40%), Gaps = 21/254 (8%)
Query: 213 QEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAA 272
QE+ GG G Q + ++ L + +LN VT + + +++ + ++
Sbjct: 204 QERKFVGGSG---QVSERIMDLLGDQV--KLNHPVTHVDQSSDNIIIETLNHEHYECKYV 258
Query: 273 IVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLGVV--- 329
I +P + I F P+LP + I + +G K + + FW + G +
Sbjct: 259 INAIPPTLTAK--IHFRPELPAERNQLIQRLPMGAVIKCMMYYKEAFWKKKDYCGCMIIE 316
Query: 330 ---APTSYACGYFLNLHKATGH-PVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMF-- 383
AP S L+ K G P ++ R A L KL E + K+
Sbjct: 317 DEDAPISIT----LDDTKPDGSLPAIMGFILARKADRLAKLHKEIRKKKICELYAKVLGS 372
Query: 384 PDATEPVQYLVSRWGTDPNTLGCYS-YDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQG 442
+A PV Y W + + GCY+ Y G+ +R P+G +FF G + + G
Sbjct: 373 QEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATKWSG 432
Query: 443 SVHGAYSAGVMAAQ 456
+ GA AG AA+
Sbjct: 433 YMEGAVEAGERAAR 446
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 13/61 (21%)
Query: 54 VVLLESRDRLGGRI------HTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRT 107
V++LE+RDR+GGR H DY VD+G +++ +N + L + LG+ Y+
Sbjct: 28 VLVLEARDRVGGRTYTIRNEHVDY-----VDVGGAYVGP--TQNRILRLSKELGIETYKV 80
Query: 108 S 108
+
Sbjct: 81 N 81
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 93/437 (21%), Positives = 166/437 (37%), Gaps = 46/437 (10%)
Query: 50 ASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSG 109
A V ++E+RDR+GGR TD G +++G W+ ++ L L+ LGL +
Sbjct: 27 AGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS--PDQTALISLLDELGLKTFERYR 84
Query: 110 DNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEH------TNDMS 163
+ +Y Y D + ++ + + + ++ E D+
Sbjct: 85 EGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLD 144
Query: 164 VLQAISIVLDRHPE---------------LRQEGLAYEVLQWYICRMEAW---FAVDADM 205
+ ++++ + L + ++ LQ + A VD D
Sbjct: 145 TVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDF 204
Query: 206 ISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDGR 265
I K +V+ G + ++ + +AL D+ + R K + V+ DG
Sbjct: 205 ILDK-----RVIGGMQQVSIR----MAEALGDDVFLNAPVRTVKWNESGATVLA---DGD 252
Query: 266 NFV-ADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVE 324
V A I+ VP + + I ++P LP + +G K+ ++ FW
Sbjct: 253 IRVEASRVILAVPPNLY--SRISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWREDG 310
Query: 325 LLGV-VAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMF 383
L G + + N + LV + A + +LS E ++ L +
Sbjct: 311 LSGTGFGASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYL 370
Query: 384 -PDATEPVQYLVSRWGTDPNTLGCY--SYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEH 440
P A EPV Y S WG++ T GCY S+D+ G+ R P+G + F ++ E
Sbjct: 371 GPKAEEPVVYYESDWGSEEWTRGCYTASFDLGGLH-RYGADSRTPVGPIHFSCSDIAAEG 429
Query: 441 QGSVHGAYSAGVMAAQN 457
G V GA G A +
Sbjct: 430 YGHVDGAVRMGQRTAAD 446
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 96/437 (21%), Positives = 176/437 (40%), Gaps = 50/437 (11%)
Query: 54 VVLLESRDRLGGRIHTDYSFGCP-VDMGASWLHGVCNENPLAPLIRRLGLTLYRTSGDNS 112
V++LE+RDR+GGR +T + VD+G +++ +N + L + LG+ Y+ + +
Sbjct: 47 VLVLEARDRVGGRTYTVRNEHVKWVDVGGAYVGP--TQNRILRLSKELGIETYKVNVNER 104
Query: 113 VLYDHDLESYA-----------LYDMDGNKVEKEMAIKVGEIFKRI-LNETQKVRDEHTN 160
++ ++Y L +D N + + M E+ K I ++ + R
Sbjct: 105 LVQYVKGKTYPFRGAFPPVWNPLAYLDYNNLWRTM----DEMGKEIPVDAPWQARHAQEW 160
Query: 161 DMSVLQAISIVLDRHPELRQEGLAY----------EV----LQWYICRMEAWFAVDADMI 206
D ++ + + R+ + EV WY+ + A +
Sbjct: 161 DKMTMKDLIDKICWTKTAREFAYLFVNINVTSEPHEVSALWFLWYVRQCGG----TARIF 216
Query: 207 SLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDGRN 266
S+ QE+ GG G + + I L D ++L+ VT I + ++V + +
Sbjct: 217 SVTNGGQERKFVGGSGQVSEQ----IMGLLGD-KVKLSSPVTYIDQTDDNIIVETLNHEH 271
Query: 267 FVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELL 326
+ I +P IL A I F+P+LP + I + +G K + + FW +
Sbjct: 272 YECKYVISAIP-PILTAK-IHFKPELPPERNQLIQRLPMGAVIKCMVYYKEAFWKKKDYC 329
Query: 327 G--VVAPTSYACGYFLNLHKATGH-PVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMF 383
G ++ L+ K G P ++ R A L KL + + K+
Sbjct: 330 GCMIIEDEEAPIAITLDDTKPDGSLPAIMGFILARKADRLAKLHKDIRKRKICELYAKVL 389
Query: 384 --PDATEPVQYLVSRWGTDPNTLGCYS-YDVVGMPGDLYERLRAPLGNLFFGGEAVSMEH 440
+A PV Y W + + GCY+ Y G+ +R P+G ++F G + +
Sbjct: 390 GSQEALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIYFAGTETATQW 449
Query: 441 QGSVHGAYSAGVMAAQN 457
G + GA AG AA+
Sbjct: 450 SGYMEGAVEAGERAARE 466
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 92/437 (21%), Positives = 165/437 (37%), Gaps = 46/437 (10%)
Query: 50 ASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSG 109
A V ++E+RDR+GGR TD G +++G W+ ++ L L+ LGL +
Sbjct: 27 AGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS--PDQTALISLLDELGLKTFERYR 84
Query: 110 DNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEH------TNDMS 163
+ +Y Y D + ++ + + + ++ E D+
Sbjct: 85 EGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLD 144
Query: 164 VLQAISIVLDRHPE---------------LRQEGLAYEVLQWYICRMEAW---FAVDADM 205
+ ++++ + L + ++ LQ + A VD D
Sbjct: 145 TVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDF 204
Query: 206 ISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDGR 265
I K +V+ G + ++ + +AL D+ + R K + V+ DG
Sbjct: 205 ILDK-----RVIGGMQQVSIR----MAEALGDDVFLNAPVRTVKWNESGATVLA---DGD 252
Query: 266 NFV-ADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVE 324
V A I+ VP + + I ++P LP + +G K+ ++ FW
Sbjct: 253 IRVEASRVILAVPPNLY--SRISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWREDG 310
Query: 325 LLGV-VAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMF 383
L G + + N + LV + A + +LS E ++ L +
Sbjct: 311 LSGTGFGASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYL 370
Query: 384 -PDATEPVQYLVSRWGTDPNTLGCY--SYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEH 440
P A EPV Y S WG++ T GCY S+D+ G+ R P+G + F ++ E
Sbjct: 371 GPKAEEPVVYYESDWGSEEWTRGCYAASFDLGGLH-RYGADSRTPVGPIHFSCSDIAAEG 429
Query: 441 QGSVHGAYSAGVMAAQN 457
V GA G A +
Sbjct: 430 YQHVDGAVRMGQRTAAD 446
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 89/228 (39%), Gaps = 11/228 (4%)
Query: 224 MVQGYDPVIKALSKDID--IRLNQRVTKISNGCNKVMVTVE--DGRNFVADAAIVTVPLG 279
+V G D + ++ + I + LN RV KI +V VT + + A V V
Sbjct: 249 IVGGMDKLPTSMYQAIQEKVHLNARVIKIQQDVKEVTVTYQTSEKETLSVTADYVIVCTT 308
Query: 280 ILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLGVVAPTSYACG-- 337
A I+FEP LP K A+ + + KI L FW + + G + T
Sbjct: 309 SRAARRIKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWEDDGIHGGKSTTDLPSRFI 368
Query: 338 YFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDATEPVQ-----Y 392
Y+ N + G V++ G A E L E + V+ L + E +Q
Sbjct: 369 YYPNHNFPNGVGVIIAYGIGDDANYFEALDFEDCGDIVINDLSLIHQLPKEEIQAICRPS 428
Query: 393 LVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEH 440
++ RW D +G + E L AP+ ++F GE + H
Sbjct: 429 MIQRWSLDKYAMGGITTFTPYQFQHFSEALTAPVDRIYFAGEYTAQAH 476
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 92/438 (21%), Positives = 165/438 (37%), Gaps = 46/438 (10%)
Query: 50 ASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSG 109
A V ++E+RDR+GGR TD G +++G W+ ++ L L+ LGL +
Sbjct: 27 AGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS--PDQTALISLLDELGLKTFERYR 84
Query: 110 DNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEH------TNDMS 163
+ +Y Y D + ++ + + + ++ E D+
Sbjct: 85 EGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLD 144
Query: 164 VLQAISIVLDRHPE---------------LRQEGLAYEVLQWYICRMEAW---FAVDADM 205
+ ++++ + L + ++ LQ + A VD D
Sbjct: 145 TVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDF 204
Query: 206 ISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDGR 265
I K +V+ G + ++ + +AL D+ + R K + V+ DG
Sbjct: 205 ILDK-----RVIGGMQQVSIR----MAEALGDDVFLNAPVRTVKWNESGATVLA---DGD 252
Query: 266 NFV-ADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVE 324
V A I+ VP + + I ++P LP + +G K+ ++ FW
Sbjct: 253 IRVEASRVILAVPPNLY--SRISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWREDG 310
Query: 325 LLGV-VAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMF 383
L G + + N + LV + A + +LS E ++ L +
Sbjct: 311 LSGTGFGASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYL 370
Query: 384 -PDATEPVQYLVSRWGTDPNTLGCY--SYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEH 440
P A EPV Y S WG++ T GCY S+D+ G+ R P+G + F ++ E
Sbjct: 371 GPKAEEPVVYYESDWGSEEWTRGCYAASFDLGGLH-RYGADSRTPVGPIHFSCSDIAAEG 429
Query: 441 QGSVHGAYSAGVMAAQNC 458
V GA G A +
Sbjct: 430 YQHVDGAVRMGQRTAADI 447
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 102/439 (23%), Positives = 163/439 (37%), Gaps = 55/439 (12%)
Query: 50 ASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSG 109
A V +LE+RDR+GGR TD G +++G W+ ++ L L+ LGL +Y
Sbjct: 29 AGLSVAVLEARDRVGGRTWTDTIDGAMLEIGGQWVS--PDQTVLMELLDELGLKMYSRYR 86
Query: 110 DNSVLY---DHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNET--------QKVRD-- 156
D +Y D Y N+ K K+ I + E K R+
Sbjct: 87 DGESVYIGADGKRTQYTGDTFPVNETTKAEMDKLVAILDELAAEIGPTEPWAHPKARELD 146
Query: 157 ---------EHTNDMSVLQAISIVLDRHPELRQEGLAYEVLQWYICRMEAW---FAVDAD 204
+++ND I + + L + A+ LQ + A D D
Sbjct: 147 TISFHHWLRQNSNDEEACNNIGLFI-AGGMLTKPAHAFSALQAVLMAASAGSFSHLTDED 205
Query: 205 MISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDG 264
I K +V+ G + +++A D+ LN V I N V V E
Sbjct: 206 FILDK-----RVIGGMQQV------SLLQAAELGDDVVLNSPVRTIKWDENGVSVVSERA 254
Query: 265 RNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVE 324
A I+ VP + + + F+P LP + +G K+ +D FW
Sbjct: 255 -TVNARFVIMAVPPNLY--SRVSFDPPLPRRQHQMHQHQSLGLVIKVHAVYDTPFWREEG 311
Query: 325 LLGVVAPTSYACGYFL-----NLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQL 379
L G T ++ G + N + LV + A + +LS E ++ +
Sbjct: 312 LSG----TGFSAGALVQEVYDNTNHGDSRGTLVGFVSDEKADAVFELSAEDRKKAILESI 367
Query: 380 KKMFPD-ATEPVQYLVSRWGTDPNTLGCY--SYDVVGMPGDLYERLRAPLGNLFFGGEAV 436
D A P Y S WG++ T G Y SYD+ G+ + A +G +++ +
Sbjct: 368 AGFLGDKALTPEVYYESDWGSEEWTRGAYASSYDLGGLH-RYGKDQHANVGPIYWSSSDL 426
Query: 437 SMEHQGSVHGAYSAGVMAA 455
+ E V GA G A
Sbjct: 427 AAEGYQHVDGAVRMGQATA 445
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 98/447 (21%), Positives = 169/447 (37%), Gaps = 64/447 (14%)
Query: 50 ASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSG 109
A V ++E+RDR+GGR TD G +++G W+ ++ L L+ LGL +
Sbjct: 27 AGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS--PDQTALISLLDELGLKTFERYR 84
Query: 110 DNSVLYDHDLESYALYDMDG----NKVEKEMAIKVGEI---------------------- 143
+ +Y Y D +KEM + E+
Sbjct: 85 EGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLD 144
Query: 144 ---FKR-ILNETQKVRDEHTNDMSVLQAISIVLDRHPELRQEGLAYEVLQWYICRMEAW- 198
FK+ ++N++ E +++ + A + L + ++ LQ + A
Sbjct: 145 TVSFKQWLINQSDDA--EARDNIGLFIAGGM-------LTKPAHSFSALQAVLMAASAGS 195
Query: 199 --FAVDADMISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNK 256
VD D I K +V+ G + ++ + +AL D+ + R K +
Sbjct: 196 FSHLVDEDFILDK-----RVIGGMQQVSIR----MAEALGDDVFLNAPVRTVKWNESGAT 246
Query: 257 VMVTVEDGRNFV-ADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRF 315
V+ DG V A I+ VP + + I ++P LP + +G K+ +
Sbjct: 247 VLA---DGDIRVEASRVILAVPPNLY--SRISYDPPLPRRQHQMHQHQSLGLVIKVHAVY 301
Query: 316 DNVFWPNVELLGV-VAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANF 374
+ FW L G + + N + LV + A + +LS E
Sbjct: 302 ETPFWREDGLSGTGFGASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEERKAT 361
Query: 375 VMMQLKKMF-PDATEPVQYLVSRWGTDPNTLGCY--SYDVVGMPGDLYERLRAPLGNLFF 431
++ L + P A EPV Y S WG++ T G Y S+D+ G+ R P+G + F
Sbjct: 362 ILASLARYLGPKAEEPVVYYESDWGSEEWTRGAYAASFDLGGLH-RYGADSRTPVGPIHF 420
Query: 432 GGEAVSMEHQGSVHGAYSAGVMAAQNC 458
++ E V GA G A +
Sbjct: 421 SCSDIAAEGYQHVDGAVRMGQRTAADI 447
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 12/248 (4%)
Query: 224 MVQGYDPVIKALSKDID--IRLNQRVTKISNGCNKVMVTVEDGRNFVAD--AAIVTVPLG 279
+V G D + ++ + I+ + LN +V KI KV V + +A A V V
Sbjct: 236 IVGGMDKLPTSMYRAIEEKVHLNAQVIKIQKNAEKVTVVYQTPAKEMASVTADYVIVCTT 295
Query: 280 ILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLGVVAPTSYACG-- 337
I+FEP LP K A+ + + KI L FW + + G + T
Sbjct: 296 SRATRRIKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWEDEGIHGGKSTTDLPSRFI 355
Query: 338 YFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDATEPVQY----- 392
Y+ N + +G V++ G A + L + A+ V+ L + E +Q
Sbjct: 356 YYPNHNFTSGVGVIIAYGIGDDANFFQALDFKDCADIVINDLSLIHQLPREEIQTFCYPS 415
Query: 393 LVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQGSVHGAYSAGV 452
++ +W D +G + E L A + ++F GE + H G + +G+
Sbjct: 416 MIQKWSLDKYAMGGITTFTPYQFQHFSESLTASVDRIYFAGEHTAEAH-GWIDSTIKSGL 474
Query: 453 MAAQNCQK 460
AA++ +
Sbjct: 475 RAARDVNR 482
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 98/247 (39%), Gaps = 16/247 (6%)
Query: 224 MVQGYDPVIKALSKDID--IRLNQRVTKISNGCNKVMVTVE----DGRNFVADAAIVTVP 277
+V G D + A+ +DI + N +V KI KV V E + + AD IV
Sbjct: 236 IVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTT 295
Query: 278 LGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLGVVAPTSYACG 337
++ LI+F P L K A+ + + KI L FW + + G + T
Sbjct: 296 SRAVR--LIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSR 353
Query: 338 --YFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDATEPVQ---- 391
Y+ N + G V++ G A + L + A+ V L + + +Q
Sbjct: 354 FIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCY 413
Query: 392 -YLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQGSVHGAYSA 450
++ +W D +G + + L A G ++F GE + H G + +
Sbjct: 414 PSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQAH-GWIDSTIKS 472
Query: 451 GVMAAQN 457
G+ AA++
Sbjct: 473 GLRAARD 479
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 53 KVVLLESRDRLGGRIHTDYSFGCPVDMG----ASWLHGVCNENPLAPLI 97
KVV LE RDR+ G IH G V +G +WL G N + +I
Sbjct: 212 KVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEII 260
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 53 KVVLLESRDRLGGRIHTDYSFGCPVDMG----ASWLHGVCNENPLAPLI 97
KVV LE RDR+ G IH+ G V +G WL G N + +I
Sbjct: 423 KVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEII 471
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 102/267 (38%), Gaps = 53/267 (19%)
Query: 229 DPVIKALSKDIDIRLNQRVTKISNGCNK--------VMVTVEDGRNFVA---DAAIVTVP 277
D + K L +D ++RLN RV ++S C + ++ R DA I T P
Sbjct: 247 DAICKDLRED-ELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIXTAP 305
Query: 278 LGILKAN---------LIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLGV 328
L +K+ L+ F P++ LS + + +NV +P +E GV
Sbjct: 306 LCDVKSXKIAKRGNPFLLNFIPEVDYVPLSVVI---------TTFKRENVKYP-LEGFGV 355
Query: 329 VAPTS---YACGYFLNLHKATGHP------VLVY--MAAGRFAYDLEKLSDESAANFVMM 377
+ P+ + L + P V +Y G +L K S V
Sbjct: 356 LVPSKEQQHGLKTLGTLFSSXXFPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTS 415
Query: 378 QLKKMFPDATEPVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVS 437
LK++ EP Y+ + + L ++YD V D ++ L LF+ G
Sbjct: 416 DLKQLLGAEGEPT-YVNHLYWSKAFPLYGHNYDSV---LDAIDKXEKNLPGLFYAG---- 467
Query: 438 MEHQG--SVHGAYSAGVMAAQNCQKYL 462
H+G SV A S+G AA YL
Sbjct: 468 -NHRGGLSVGKALSSGCNAADLVISYL 493
>pdb|3GO9|A Chain A, Predicted Insulinase Family Protease From Yersinia Pestis
Length = 492
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 75 CPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTSGDNS 112
P + + W G+ NE PL P I TLY S N+
Sbjct: 86 TPAQLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPNN 123
>pdb|3JTX|A Chain A, Crystal Structure Of Aminotransferase (np_283882.1) From
Neisseria Meningitidis Z2491 At 1.91 A Resolution
pdb|3JTX|B Chain B, Crystal Structure Of Aminotransferase (np_283882.1) From
Neisseria Meningitidis Z2491 At 1.91 A Resolution
Length = 396
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 200 AVDADMISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMV 259
++ S+ WD EQ + L + ++ VI L + D+ K+ + + +
Sbjct: 279 SIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQVFDV-------KLPDASFYIWL 331
Query: 260 TVEDG------RNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGV 305
V DG RN AAI +P L + Q P +++ +AD+
Sbjct: 332 KVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVAT 383
>pdb|3BIO|A Chain A, Crystal Structure Of Oxidoreductase (gfo/idh/moca Family
Member) From Porphyromonas Gingivalis W83
pdb|3BIO|B Chain B, Crystal Structure Of Oxidoreductase (gfo/idh/moca Family
Member) From Porphyromonas Gingivalis W83
Length = 304
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 160 NDMSVLQAISIVLDRHPELRQEGLAYEVLQWYICRMEAWFAVDADMISLKCWDQEQVLSG 219
+D+ L+++ + L P E A E+L+ IC +++ D + + SG
Sbjct: 58 SDIEQLESVDVALVCSPSREVERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSG 117
Query: 220 GHGLMVQGYDP----VIKALSKDI 239
++ G+DP V++ L + I
Sbjct: 118 AAAVIASGWDPGSDSVVRTLXQAI 141
>pdb|3BSF|A Chain A, Crystal Structure Of The MtaSAH NUCLEOSIDASE
pdb|3BSF|B Chain B, Crystal Structure Of The MtaSAH NUCLEOSIDASE
Length = 254
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 86 GVCNENPLAPLIRRLGLTLYR-TSGDNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIF 144
G+ N P LI+ L L + R ++GD+ + HD ES D +E V +IF
Sbjct: 141 GMRNTFPTPNLIKELNLKVGRLSTGDSMDMSPHDEESITANDATVKDMEGAAVAYVADIF 200
Query: 145 K 145
K
Sbjct: 201 K 201
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 123 ALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTNDMSVLQAISI 170
AL+ G + K+ +K +I ++LN+ QK EH +D + + +S+
Sbjct: 314 ALFASLGYDLSKDTYVKYNDIVGKLLNDPQKRFTEHWDDEAKVPWLSV 361
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,218,632
Number of Sequences: 62578
Number of extensions: 591480
Number of successful extensions: 1386
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1183
Number of HSP's gapped (non-prelim): 96
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)