Query 039105
Match_columns 493
No_of_seqs 161 out of 1955
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 06:19:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039105.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039105hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02268 probable polyamine ox 100.0 1.2E-56 2.5E-61 450.6 47.4 434 29-462 1-434 (435)
2 PLN02529 lysine-specific histo 100.0 4.5E-46 9.7E-51 381.9 43.2 429 26-468 158-604 (738)
3 PLN03000 amine oxidase 100.0 5.8E-46 1.2E-50 381.4 43.7 429 26-468 182-629 (881)
4 PLN02328 lysine-specific histo 100.0 2.6E-45 5.7E-50 377.4 42.7 431 25-469 235-686 (808)
5 KOG0029 Amine oxidase [Seconda 100.0 6.5E-46 1.4E-50 367.4 35.5 432 25-464 12-461 (501)
6 PLN02676 polyamine oxidase 100.0 3.5E-44 7.6E-49 360.0 44.5 423 25-464 23-475 (487)
7 PLN02976 amine oxidase 100.0 5.5E-44 1.2E-48 374.8 43.8 428 27-464 692-1188(1713)
8 PLN02568 polyamine oxidase 100.0 5.7E-43 1.2E-47 353.3 44.6 434 25-462 2-535 (539)
9 KOG0685 Flavin-containing amin 100.0 1.4E-40 3.1E-45 311.6 34.3 429 25-465 18-494 (498)
10 COG1231 Monoamine oxidase [Ami 100.0 2.8E-40 6.1E-45 310.5 29.0 414 26-464 5-449 (450)
11 TIGR00562 proto_IX_ox protopor 100.0 1.5E-38 3.3E-43 322.4 31.8 402 28-463 2-461 (462)
12 PRK12416 protoporphyrinogen ox 100.0 7.5E-38 1.6E-42 316.7 33.7 405 28-462 1-461 (463)
13 PRK07233 hypothetical protein; 100.0 3E-37 6.5E-42 311.1 28.2 403 30-464 1-433 (434)
14 PRK11883 protoporphyrinogen ox 100.0 9.5E-37 2.1E-41 308.8 30.9 401 29-460 1-450 (451)
15 PLN02576 protoporphyrinogen ox 100.0 1.1E-36 2.4E-41 311.0 29.8 402 25-463 9-488 (496)
16 PLN02612 phytoene desaturase 100.0 1.3E-35 2.9E-40 303.5 36.0 415 26-464 91-550 (567)
17 COG1232 HemY Protoporphyrinoge 100.0 3.2E-36 6.8E-41 291.0 29.2 403 29-459 1-443 (444)
18 TIGR02731 phytoene_desat phyto 100.0 1.8E-35 3.9E-40 298.5 35.7 406 30-459 1-453 (453)
19 PF01593 Amino_oxidase: Flavin 100.0 3.2E-36 7E-41 304.4 26.1 406 38-459 1-450 (450)
20 PRK07208 hypothetical protein; 100.0 5.2E-34 1.1E-38 290.1 33.7 402 25-461 1-460 (479)
21 PLN02487 zeta-carotene desatur 100.0 4.2E-34 9.1E-39 288.6 30.4 416 26-464 73-555 (569)
22 TIGR02732 zeta_caro_desat caro 100.0 2E-33 4.3E-38 282.4 33.1 407 30-459 1-474 (474)
23 TIGR03467 HpnE squalene-associ 100.0 1.1E-32 2.4E-37 276.6 33.3 388 42-459 1-418 (419)
24 TIGR02733 desat_CrtD C-3',4' d 100.0 3.1E-32 6.7E-37 277.6 33.6 426 29-460 2-490 (492)
25 TIGR02734 crtI_fam phytoene de 100.0 1.2E-31 2.6E-36 274.1 28.3 424 31-464 1-494 (502)
26 TIGR02730 carot_isom carotene 100.0 1.9E-30 4.1E-35 263.9 34.4 427 29-461 1-491 (493)
27 COG3380 Predicted NAD/FAD-depe 100.0 2.2E-31 4.8E-36 231.3 17.9 322 29-461 2-330 (331)
28 COG2907 Predicted NAD/FAD-bind 100.0 2.5E-27 5.4E-32 212.9 21.2 281 26-323 6-311 (447)
29 COG1233 Phytoene dehydrogenase 99.9 1.5E-26 3.3E-31 233.1 21.2 249 27-280 2-281 (487)
30 KOG1276 Protoporphyrinogen oxi 99.9 9.2E-25 2E-29 202.1 25.6 407 27-459 10-490 (491)
31 COG3349 Uncharacterized conser 99.9 9.5E-25 2.1E-29 210.1 17.5 416 29-467 1-468 (485)
32 KOG4254 Phytoene desaturase [C 99.9 7.9E-21 1.7E-25 176.9 22.9 238 217-462 252-546 (561)
33 TIGR00031 UDP-GALP_mutase UDP- 99.8 1E-17 2.2E-22 161.3 23.4 229 28-281 1-248 (377)
34 PTZ00363 rab-GDP dissociation 99.8 3.9E-18 8.4E-23 168.2 17.3 231 25-277 1-287 (443)
35 COG2081 Predicted flavoprotein 99.8 3.8E-17 8.1E-22 152.3 18.7 59 219-277 100-164 (408)
36 PF13450 NAD_binding_8: NAD(P) 99.7 1.7E-17 3.7E-22 118.7 5.7 68 33-100 1-68 (68)
37 PRK13977 myosin-cross-reactive 99.7 1.7E-15 3.7E-20 150.7 20.3 74 25-101 19-98 (576)
38 PRK08773 2-octaprenyl-3-methyl 99.6 2.6E-13 5.6E-18 134.8 24.3 50 231-280 119-169 (392)
39 TIGR01988 Ubi-OHases Ubiquinon 99.6 4E-13 8.8E-18 133.3 23.6 52 230-281 111-164 (385)
40 PRK05714 2-octaprenyl-3-methyl 99.6 1.7E-12 3.7E-17 129.4 25.4 54 230-283 117-171 (405)
41 PRK07364 2-octaprenyl-6-methox 99.6 7.5E-13 1.6E-17 132.6 23.0 39 25-63 15-53 (415)
42 PRK09126 hypothetical protein; 99.5 9.6E-13 2.1E-17 130.8 22.6 51 231-281 116-168 (392)
43 PRK08013 oxidoreductase; Provi 99.5 3.2E-12 7E-17 127.1 25.1 53 231-283 117-171 (400)
44 PRK08850 2-octaprenyl-6-methox 99.5 1.6E-12 3.5E-17 129.5 22.8 52 230-281 116-169 (405)
45 TIGR01984 UbiH 2-polyprenyl-6- 99.5 3.3E-12 7.1E-17 126.5 23.9 51 230-280 110-162 (382)
46 PRK07608 ubiquinone biosynthes 99.5 2.9E-12 6.3E-17 127.2 23.2 51 230-281 116-168 (388)
47 COG0644 FixC Dehydrogenases (f 99.5 3.5E-12 7.5E-17 126.4 23.4 42 27-68 2-43 (396)
48 PF01266 DAO: FAD dependent ox 99.5 9.8E-13 2.1E-17 129.0 18.3 44 237-281 160-204 (358)
49 PRK10157 putative oxidoreducta 99.5 6.1E-12 1.3E-16 125.7 24.0 40 27-66 4-43 (428)
50 PRK07333 2-octaprenyl-6-methox 99.5 4.7E-12 1E-16 126.4 22.9 51 231-281 117-168 (403)
51 COG0654 UbiH 2-polyprenyl-6-me 99.5 4.4E-12 9.4E-17 125.4 22.2 203 230-463 109-317 (387)
52 PRK05732 2-octaprenyl-6-methox 99.5 9.7E-12 2.1E-16 123.8 24.5 50 231-280 118-169 (395)
53 PRK08020 ubiF 2-octaprenyl-3-m 99.5 5.9E-12 1.3E-16 125.1 22.9 52 230-281 117-170 (391)
54 PRK07588 hypothetical protein; 99.5 3.4E-12 7.4E-17 126.7 20.3 52 232-283 110-161 (391)
55 PRK07494 2-octaprenyl-6-methox 99.5 5.1E-12 1.1E-16 125.4 21.4 196 230-460 116-316 (388)
56 TIGR01377 soxA_mon sarcosine o 99.5 2.5E-11 5.5E-16 120.1 25.9 56 223-279 143-199 (380)
57 PRK12409 D-amino acid dehydrog 99.5 3.9E-11 8.4E-16 119.9 27.2 40 28-67 1-40 (410)
58 COG1635 THI4 Ribulose 1,5-bisp 99.5 1.1E-12 2.4E-17 111.8 12.9 68 27-104 29-96 (262)
59 PRK11259 solA N-methyltryptoph 99.5 5.7E-11 1.2E-15 117.4 27.3 52 228-280 152-204 (376)
60 PRK06847 hypothetical protein; 99.4 1.5E-11 3.3E-16 121.5 22.6 45 237-281 120-164 (375)
61 PRK08849 2-octaprenyl-3-methyl 99.4 1.9E-11 4.1E-16 120.9 22.8 53 231-283 116-170 (384)
62 PRK07045 putative monooxygenas 99.4 2.3E-11 5E-16 120.6 23.4 53 231-283 112-168 (388)
63 PRK05868 hypothetical protein; 99.4 4.5E-11 9.8E-16 117.4 25.2 49 235-283 115-163 (372)
64 TIGR02032 GG-red-SF geranylger 99.4 2.5E-11 5.3E-16 115.7 22.2 37 29-65 1-37 (295)
65 COG0579 Predicted dehydrogenas 99.4 2.5E-12 5.4E-17 124.4 14.7 198 27-281 2-212 (429)
66 PF03486 HI0933_like: HI0933-l 99.4 1.2E-12 2.6E-17 128.1 12.7 39 29-67 1-39 (409)
67 PRK06184 hypothetical protein; 99.4 1.8E-11 3.9E-16 125.3 21.7 53 231-283 115-171 (502)
68 PRK10015 oxidoreductase; Provi 99.4 3.6E-11 7.9E-16 120.0 22.6 39 27-65 4-42 (429)
69 TIGR01989 COQ6 Ubiquinone bios 99.4 5.8E-11 1.3E-15 119.3 22.9 54 230-283 122-186 (437)
70 PRK06185 hypothetical protein; 99.4 6.4E-11 1.4E-15 118.3 22.7 38 25-62 3-40 (407)
71 PRK08244 hypothetical protein; 99.4 5.1E-11 1.1E-15 121.8 22.2 36 28-63 2-37 (493)
72 PRK06834 hypothetical protein; 99.4 1.2E-10 2.6E-15 118.1 24.5 45 238-282 114-158 (488)
73 PRK07190 hypothetical protein; 99.4 1.1E-10 2.4E-15 118.2 24.1 47 237-283 122-168 (487)
74 PRK11445 putative oxidoreducta 99.4 1.7E-10 3.7E-15 112.5 24.4 47 235-281 109-158 (351)
75 PRK00711 D-amino acid dehydrog 99.4 4.2E-10 9.1E-15 112.8 26.3 39 30-68 2-40 (416)
76 COG0562 Glf UDP-galactopyranos 99.4 1.3E-11 2.8E-16 111.4 13.4 223 28-281 1-242 (374)
77 TIGR01373 soxB sarcosine oxida 99.4 1.6E-10 3.5E-15 115.3 22.9 40 25-65 27-68 (407)
78 PRK07236 hypothetical protein; 99.3 1.6E-10 3.5E-15 114.5 21.9 46 238-283 112-157 (386)
79 PRK06996 hypothetical protein; 99.3 1.8E-10 3.9E-15 114.5 22.0 48 231-278 121-172 (398)
80 PRK08243 4-hydroxybenzoate 3-m 99.3 4.3E-10 9.3E-15 111.6 24.2 59 28-103 2-62 (392)
81 PRK06753 hypothetical protein; 99.3 1.1E-10 2.4E-15 115.2 19.9 46 238-283 110-155 (373)
82 PRK06617 2-octaprenyl-6-methox 99.3 2E-10 4.4E-15 113.1 21.6 53 230-283 109-163 (374)
83 PF01946 Thi4: Thi4 family; PD 99.3 7.3E-12 1.6E-16 107.8 9.3 69 26-104 15-83 (230)
84 TIGR00292 thiazole biosynthesi 99.3 7.8E-11 1.7E-15 108.2 16.5 42 26-67 19-60 (254)
85 PRK06183 mhpA 3-(3-hydroxyphen 99.3 3E-10 6.6E-15 117.2 22.8 39 26-64 8-46 (538)
86 PRK11728 hydroxyglutarate oxid 99.3 1.9E-11 4.1E-16 121.3 13.0 52 228-280 152-204 (393)
87 PRK08132 FAD-dependent oxidore 99.3 8.7E-10 1.9E-14 114.2 25.5 61 26-103 21-81 (547)
88 PRK06126 hypothetical protein; 99.3 7.5E-10 1.6E-14 114.7 24.1 37 26-62 5-41 (545)
89 PRK08163 salicylate hydroxylas 99.3 1.2E-10 2.5E-15 116.0 17.1 53 230-282 114-168 (396)
90 PLN02463 lycopene beta cyclase 99.3 2E-09 4.4E-14 107.2 25.5 43 237-280 127-169 (447)
91 PRK04176 ribulose-1,5-biphosph 99.3 9.9E-11 2.2E-15 107.9 15.1 47 21-67 18-64 (257)
92 TIGR02023 BchP-ChlP geranylger 99.3 1.1E-09 2.4E-14 108.4 23.6 32 29-60 1-32 (388)
93 PF05834 Lycopene_cycl: Lycope 99.3 5.8E-09 1.3E-13 102.5 27.4 50 231-280 93-142 (374)
94 COG0665 DadA Glycine/D-amino a 99.3 1.5E-09 3.2E-14 107.8 23.4 39 26-64 2-40 (387)
95 TIGR03329 Phn_aa_oxid putative 99.2 8.8E-11 1.9E-15 118.8 14.3 56 223-280 181-237 (460)
96 PF01494 FAD_binding_3: FAD bi 99.2 1.2E-11 2.7E-16 121.1 7.8 35 29-63 2-36 (356)
97 PLN02927 antheraxanthin epoxid 99.2 5.7E-10 1.2E-14 114.8 20.0 43 241-283 209-251 (668)
98 PTZ00383 malate:quinone oxidor 99.2 3.2E-10 6.9E-15 114.0 16.3 43 25-67 42-86 (497)
99 PRK07538 hypothetical protein; 99.2 2.6E-09 5.7E-14 106.7 22.8 35 29-63 1-35 (413)
100 PF13738 Pyr_redox_3: Pyridine 99.2 1.4E-10 3E-15 104.1 12.0 41 238-278 96-136 (203)
101 PLN02172 flavin-containing mon 99.2 2.4E-10 5.2E-15 114.5 14.4 45 25-69 7-51 (461)
102 PLN00093 geranylgeranyl diphos 99.2 9.2E-09 2E-13 103.0 25.3 40 22-61 33-72 (450)
103 PRK01747 mnmC bifunctional tRN 99.2 3.1E-10 6.8E-15 119.8 15.6 53 228-280 411-463 (662)
104 PRK08294 phenol 2-monooxygenas 99.2 4.2E-09 9E-14 110.0 23.1 60 25-103 29-91 (634)
105 KOG2820 FAD-dependent oxidored 99.2 4.4E-10 9.6E-15 102.2 13.6 66 218-283 146-215 (399)
106 TIGR02360 pbenz_hydroxyl 4-hyd 99.2 4.2E-09 9.2E-14 104.2 22.0 61 28-103 2-62 (390)
107 PRK11101 glpA sn-glycerol-3-ph 99.2 8.5E-09 1.8E-13 106.2 23.7 39 27-65 5-43 (546)
108 PRK06475 salicylate hydroxylas 99.1 8.2E-09 1.8E-13 102.7 22.4 54 230-283 112-170 (400)
109 PLN02697 lycopene epsilon cycl 99.1 3.1E-08 6.8E-13 100.3 26.1 35 26-60 106-140 (529)
110 TIGR03364 HpnW_proposed FAD de 99.1 5.1E-10 1.1E-14 110.1 12.8 54 222-280 142-197 (365)
111 KOG2614 Kynurenine 3-monooxyge 99.1 1.1E-08 2.5E-13 96.3 19.2 36 28-63 2-37 (420)
112 TIGR02028 ChlP geranylgeranyl 99.1 2.9E-08 6.2E-13 98.4 23.5 36 29-64 1-36 (398)
113 PLN02661 Putative thiazole syn 99.1 1.7E-09 3.8E-14 102.0 13.7 43 25-67 89-132 (357)
114 TIGR01790 carotene-cycl lycope 99.1 4E-08 8.6E-13 97.6 24.2 36 30-65 1-36 (388)
115 TIGR01812 sdhA_frdA_Gneg succi 99.1 2.1E-08 4.6E-13 104.2 23.1 37 30-66 1-37 (566)
116 PLN02464 glycerol-3-phosphate 99.1 7.3E-08 1.6E-12 100.5 26.5 40 26-65 69-108 (627)
117 TIGR01320 mal_quin_oxido malat 99.1 2.3E-09 4.9E-14 108.2 14.5 41 29-69 1-43 (483)
118 PF00996 GDI: GDP dissociation 99.1 2.6E-09 5.6E-14 104.5 14.2 229 25-276 1-285 (438)
119 PRK08274 tricarballylate dehyd 99.1 5.3E-09 1.1E-13 106.3 16.7 42 25-66 1-44 (466)
120 TIGR01292 TRX_reduct thioredox 99.1 2.6E-09 5.6E-14 102.1 13.6 41 238-279 71-111 (300)
121 PRK13339 malate:quinone oxidor 99.1 1.9E-09 4.1E-14 108.0 13.1 42 27-68 5-48 (497)
122 COG2072 TrkA Predicted flavopr 99.0 1.6E-09 3.4E-14 108.1 12.5 56 25-80 5-61 (443)
123 PRK06452 sdhA succinate dehydr 99.0 6E-08 1.3E-12 100.3 24.2 40 27-66 4-43 (566)
124 PRK06481 fumarate reductase fl 99.0 5.1E-09 1.1E-13 106.9 16.1 43 25-67 58-100 (506)
125 PF00890 FAD_binding_2: FAD bi 99.0 3.2E-09 6.9E-14 106.5 14.2 36 30-65 1-36 (417)
126 PRK05257 malate:quinone oxidor 99.0 9.1E-09 2E-13 104.0 17.4 44 26-69 3-48 (494)
127 TIGR01813 flavo_cyto_c flavocy 99.0 3.5E-09 7.7E-14 106.7 14.5 38 30-67 1-39 (439)
128 PRK12266 glpD glycerol-3-phosp 99.0 2.9E-09 6.3E-14 108.7 13.9 42 25-66 3-44 (508)
129 TIGR03219 salicylate_mono sali 99.0 2.5E-09 5.4E-14 107.0 12.3 45 239-283 118-162 (414)
130 PRK13369 glycerol-3-phosphate 99.0 2.5E-09 5.4E-14 109.2 12.0 42 25-66 3-44 (502)
131 PTZ00367 squalene epoxidase; P 99.0 6.7E-08 1.5E-12 99.0 21.7 36 26-61 31-66 (567)
132 TIGR00275 flavoprotein, HI0933 99.0 9.4E-09 2E-13 101.8 14.2 36 32-67 1-36 (400)
133 PF06100 Strep_67kDa_ant: Stre 99.0 1.9E-07 4.2E-12 90.9 22.2 71 28-101 2-78 (500)
134 PF13454 NAD_binding_9: FAD-NA 98.9 1.3E-08 2.7E-13 86.8 12.2 48 231-278 107-155 (156)
135 PLN02985 squalene monooxygenas 98.9 1.7E-07 3.6E-12 95.6 22.5 40 22-61 37-76 (514)
136 PRK05976 dihydrolipoamide dehy 98.9 3E-08 6.5E-13 100.8 17.0 43 25-68 1-43 (472)
137 KOG1399 Flavin-containing mono 98.9 5.5E-09 1.2E-13 102.8 10.8 44 26-69 4-47 (448)
138 PRK05249 soluble pyridine nucl 98.9 3.8E-08 8.3E-13 99.9 17.1 42 27-68 4-45 (461)
139 PRK09897 hypothetical protein; 98.9 2.3E-08 4.9E-13 101.3 14.8 41 28-68 1-44 (534)
140 TIGR03140 AhpF alkyl hydropero 98.9 1.7E-08 3.7E-13 103.4 13.9 43 238-280 281-323 (515)
141 PRK06467 dihydrolipoamide dehy 98.9 5E-08 1.1E-12 98.9 16.9 43 26-68 2-44 (471)
142 TIGR01789 lycopene_cycl lycope 98.9 7.7E-08 1.7E-12 94.2 17.5 37 30-66 1-39 (370)
143 PRK15317 alkyl hydroperoxide r 98.9 2.5E-08 5.4E-13 102.4 14.3 43 238-280 280-322 (517)
144 TIGR01424 gluta_reduc_2 glutat 98.9 5.9E-08 1.3E-12 97.9 16.6 40 28-68 2-41 (446)
145 PRK12845 3-ketosteroid-delta-1 98.9 7.4E-08 1.6E-12 99.2 17.2 43 25-68 13-55 (564)
146 COG0492 TrxB Thioredoxin reduc 98.9 2.1E-08 4.5E-13 94.3 11.9 41 27-68 2-43 (305)
147 PRK05192 tRNA uridine 5-carbox 98.9 2.3E-08 5E-13 101.3 12.9 41 26-66 2-43 (618)
148 PRK07573 sdhA succinate dehydr 98.9 4.6E-08 9.9E-13 102.3 15.3 39 27-65 34-72 (640)
149 PRK07818 dihydrolipoamide dehy 98.9 4.7E-08 1E-12 99.2 15.0 41 27-68 3-43 (466)
150 PRK06175 L-aspartate oxidase; 98.9 3.4E-08 7.4E-13 98.8 13.6 39 27-66 3-41 (433)
151 COG0578 GlpA Glycerol-3-phosph 98.8 6.2E-07 1.3E-11 89.2 21.8 42 26-67 10-51 (532)
152 PRK06115 dihydrolipoamide dehy 98.8 4.5E-08 9.8E-13 99.1 14.4 41 28-68 3-43 (466)
153 PF00743 FMO-like: Flavin-bind 98.8 1.5E-08 3.3E-13 103.0 10.8 41 29-69 2-42 (531)
154 PRK06134 putative FAD-binding 98.8 8.8E-08 1.9E-12 99.5 16.7 44 25-68 9-52 (581)
155 PRK07803 sdhA succinate dehydr 98.8 8.6E-08 1.9E-12 100.2 16.2 39 27-65 7-45 (626)
156 PRK07804 L-aspartate oxidase; 98.8 4.8E-08 1E-12 100.5 14.1 41 26-66 14-54 (541)
157 TIGR01421 gluta_reduc_1 glutat 98.8 8.9E-08 1.9E-12 96.5 15.6 41 27-68 1-41 (450)
158 PRK07121 hypothetical protein; 98.8 9.7E-08 2.1E-12 97.6 15.6 42 26-67 18-59 (492)
159 PRK06416 dihydrolipoamide dehy 98.8 1.2E-07 2.6E-12 96.3 16.0 41 27-68 3-43 (462)
160 PRK12834 putative FAD-binding 98.8 1.4E-07 3E-12 97.6 16.5 42 26-67 2-45 (549)
161 PRK12837 3-ketosteroid-delta-1 98.8 1.9E-07 4.1E-12 95.7 17.2 41 26-67 5-45 (513)
162 PRK12842 putative succinate de 98.8 1.3E-07 2.8E-12 98.3 16.2 42 27-68 8-49 (574)
163 TIGR03143 AhpF_homolog putativ 98.8 2.8E-08 6.2E-13 102.6 11.1 43 25-68 1-43 (555)
164 PTZ00139 Succinate dehydrogena 98.8 1.6E-07 3.4E-12 98.0 16.2 57 10-66 8-67 (617)
165 PRK12839 hypothetical protein; 98.8 1.7E-07 3.7E-12 96.8 16.2 44 25-68 5-48 (572)
166 PRK08071 L-aspartate oxidase; 98.8 7E-08 1.5E-12 98.6 13.2 38 28-66 3-40 (510)
167 TIGR00551 nadB L-aspartate oxi 98.8 1.5E-07 3.3E-12 95.8 15.7 38 28-66 2-39 (488)
168 PRK12844 3-ketosteroid-delta-1 98.8 3E-07 6.5E-12 95.0 17.9 42 26-67 4-45 (557)
169 PF12831 FAD_oxidored: FAD dep 98.8 9.9E-09 2.1E-13 102.6 6.7 40 30-69 1-40 (428)
170 PRK08401 L-aspartate oxidase; 98.8 1.5E-07 3.2E-12 95.3 14.9 34 28-61 1-34 (466)
171 PRK06069 sdhA succinate dehydr 98.8 2.1E-07 4.5E-12 96.8 16.3 40 27-66 4-46 (577)
172 PRK07843 3-ketosteroid-delta-1 98.8 3.3E-07 7.2E-12 94.7 17.5 42 26-67 5-46 (557)
173 PRK05945 sdhA succinate dehydr 98.7 1.2E-07 2.6E-12 98.4 13.5 39 28-66 3-43 (575)
174 COG2509 Uncharacterized FAD-de 98.7 5E-07 1.1E-11 86.3 16.0 49 229-277 177-227 (486)
175 PF01134 GIDA: Glucose inhibit 98.7 8E-08 1.7E-12 92.3 10.9 40 238-278 110-150 (392)
176 PRK12835 3-ketosteroid-delta-1 98.7 3.3E-07 7.2E-12 95.0 16.4 42 25-66 8-49 (584)
177 PRK06263 sdhA succinate dehydr 98.7 2.7E-07 5.9E-12 95.3 15.4 39 27-66 6-45 (543)
178 COG1249 Lpd Pyruvate/2-oxoglut 98.7 2.5E-07 5.4E-12 91.6 13.7 43 26-68 2-44 (454)
179 PRK08255 salicylyl-CoA 5-hydro 98.7 2.3E-06 4.9E-11 91.9 22.1 34 29-62 1-36 (765)
180 PRK10262 thioredoxin reductase 98.7 2.6E-07 5.6E-12 89.1 13.3 42 26-68 4-45 (321)
181 PRK08958 sdhA succinate dehydr 98.7 3.7E-07 7.9E-12 94.8 15.2 40 27-66 6-45 (588)
182 PRK06327 dihydrolipoamide dehy 98.7 7E-07 1.5E-11 90.8 17.0 42 26-67 2-49 (475)
183 PRK07395 L-aspartate oxidase; 98.7 1.9E-07 4.2E-12 96.0 12.6 41 25-66 6-46 (553)
184 PRK08626 fumarate reductase fl 98.7 3.6E-07 7.7E-12 95.8 14.5 39 27-65 4-42 (657)
185 PLN00128 Succinate dehydrogena 98.7 5.7E-07 1.2E-11 93.8 15.8 40 27-66 49-88 (635)
186 TIGR02485 CobZ_N-term precorri 98.7 3E-07 6.6E-12 92.4 13.3 34 33-66 1-36 (432)
187 PRK09078 sdhA succinate dehydr 98.7 6.4E-07 1.4E-11 93.3 15.8 40 27-66 11-50 (598)
188 PRK07512 L-aspartate oxidase; 98.6 2.5E-07 5.4E-12 94.6 12.5 35 26-62 7-41 (513)
189 PRK06854 adenylylsulfate reduc 98.6 8.4E-07 1.8E-11 92.5 16.6 37 28-64 11-49 (608)
190 PRK12843 putative FAD-binding 98.6 8.6E-07 1.9E-11 92.1 16.4 44 25-68 13-56 (578)
191 PRK09231 fumarate reductase fl 98.6 3.4E-07 7.4E-12 95.0 13.4 40 27-66 3-44 (582)
192 PLN02507 glutathione reductase 98.6 1.4E-06 3.1E-11 88.8 17.5 43 26-68 23-74 (499)
193 TIGR01176 fum_red_Fp fumarate 98.6 4.4E-07 9.5E-12 93.9 13.8 39 28-66 3-43 (580)
194 PTZ00306 NADH-dependent fumara 98.6 5.9E-07 1.3E-11 100.3 15.0 42 26-67 407-448 (1167)
195 PRK08275 putative oxidoreducta 98.6 4.5E-07 9.9E-12 93.8 13.0 37 27-63 8-46 (554)
196 PRK07057 sdhA succinate dehydr 98.6 1.7E-06 3.7E-11 90.0 16.9 41 26-66 10-50 (591)
197 PF07156 Prenylcys_lyase: Pren 98.6 7.6E-06 1.6E-10 79.0 19.9 102 178-280 76-187 (368)
198 PRK08205 sdhA succinate dehydr 98.6 1.8E-06 4E-11 89.8 16.9 39 26-65 3-41 (583)
199 TIGR01811 sdhA_Bsu succinate d 98.6 1.4E-06 3.1E-11 90.6 16.0 35 31-65 1-35 (603)
200 PLN02815 L-aspartate oxidase 98.6 5.9E-07 1.3E-11 92.9 12.8 39 27-66 28-66 (594)
201 KOG2404 Fumarate reductase, fl 98.6 1.7E-06 3.6E-11 78.7 13.9 38 30-67 11-48 (477)
202 PF00070 Pyr_redox: Pyridine n 98.6 7.7E-07 1.7E-11 66.3 9.7 34 30-63 1-34 (80)
203 PRK08641 sdhA succinate dehydr 98.5 3.4E-06 7.4E-11 87.7 17.1 40 27-66 2-41 (589)
204 KOG2844 Dimethylglycine dehydr 98.5 1E-06 2.2E-11 87.5 11.9 62 218-280 173-243 (856)
205 PRK07845 flavoprotein disulfid 98.5 4.3E-06 9.2E-11 84.8 16.9 40 28-68 1-40 (466)
206 PRK12779 putative bifunctional 98.5 1.4E-07 3E-12 102.2 6.2 43 26-68 304-346 (944)
207 KOG2853 Possible oxidoreductas 98.5 1.7E-05 3.6E-10 72.9 17.5 38 25-62 83-124 (509)
208 TIGR03315 Se_ygfK putative sel 98.5 2E-07 4.4E-12 100.2 5.9 43 27-69 536-578 (1012)
209 PRK06116 glutathione reductase 98.4 1.8E-07 3.8E-12 94.7 5.0 42 26-68 2-43 (450)
210 PRK09077 L-aspartate oxidase; 98.4 3.8E-06 8.3E-11 86.5 14.5 39 27-66 7-45 (536)
211 PTZ00058 glutathione reductase 98.4 1.6E-07 3.4E-12 96.3 3.8 42 26-68 46-87 (561)
212 PRK12831 putative oxidoreducta 98.4 3.3E-07 7.1E-12 92.5 6.0 44 25-68 137-180 (464)
213 PF06039 Mqo: Malate:quinone o 98.4 1.6E-05 3.5E-10 76.9 16.9 41 27-67 2-44 (488)
214 TIGR01350 lipoamide_DH dihydro 98.4 2.7E-07 6E-12 93.7 5.3 41 28-69 1-41 (461)
215 PLN02852 ferredoxin-NADP+ redu 98.4 3.6E-07 7.7E-12 91.6 5.8 45 25-69 23-69 (491)
216 PRK07251 pyridine nucleotide-d 98.4 3.5E-07 7.5E-12 92.2 5.5 42 27-68 2-44 (438)
217 TIGR00136 gidA glucose-inhibit 98.4 4.9E-06 1.1E-10 84.6 13.2 39 29-67 1-39 (617)
218 PRK06912 acoL dihydrolipoamide 98.4 6.3E-06 1.4E-10 83.5 14.2 38 30-68 2-39 (458)
219 PRK06370 mercuric reductase; V 98.4 3.9E-07 8.5E-12 92.5 5.5 43 25-68 2-44 (463)
220 PRK08010 pyridine nucleotide-d 98.4 4.2E-07 9.1E-12 91.7 5.5 42 27-68 2-44 (441)
221 COG3573 Predicted oxidoreducta 98.4 3.6E-06 7.9E-11 76.9 10.8 41 27-67 4-46 (552)
222 PF04820 Trp_halogenase: Trypt 98.4 1.6E-06 3.6E-11 87.0 9.4 56 30-103 1-59 (454)
223 PRK09853 putative selenate red 98.3 5.1E-07 1.1E-11 96.7 5.7 44 26-69 537-580 (1019)
224 COG1148 HdrA Heterodisulfide r 98.3 5E-07 1.1E-11 86.5 4.2 43 27-69 123-165 (622)
225 PRK06292 dihydrolipoamide dehy 98.3 6.7E-07 1.4E-11 90.8 5.3 41 27-68 2-42 (460)
226 KOG2415 Electron transfer flav 98.3 6.8E-07 1.5E-11 83.9 4.7 44 26-69 74-123 (621)
227 TIGR03452 mycothione_red mycot 98.3 1.3E-05 2.8E-10 80.9 14.0 39 27-68 1-39 (452)
228 COG1053 SdhA Succinate dehydro 98.3 1.7E-05 3.6E-10 81.2 14.7 42 25-66 3-44 (562)
229 COG1252 Ndh NADH dehydrogenase 98.3 2.5E-05 5.5E-10 75.7 14.9 36 27-62 2-39 (405)
230 PRK12775 putative trifunctiona 98.3 9.4E-07 2E-11 96.8 5.8 42 27-68 429-470 (1006)
231 TIGR02061 aprA adenosine phosp 98.3 3.8E-05 8.2E-10 79.7 17.2 33 30-62 1-37 (614)
232 PRK12769 putative oxidoreducta 98.3 1.1E-06 2.3E-11 93.0 5.9 43 27-69 326-368 (654)
233 PTZ00052 thioredoxin reductase 98.3 1.1E-06 2.3E-11 89.8 5.6 43 26-68 3-53 (499)
234 PTZ00188 adrenodoxin reductase 98.3 1.4E-06 3E-11 86.1 6.1 44 26-69 37-81 (506)
235 TIGR01316 gltA glutamate synth 98.3 1.3E-06 2.9E-11 87.9 6.2 43 26-68 131-173 (449)
236 PRK14694 putative mercuric red 98.3 1.1E-06 2.3E-11 89.3 5.5 42 26-68 4-45 (468)
237 TIGR02053 MerA mercuric reduct 98.2 1.1E-06 2.3E-11 89.3 5.2 39 29-68 1-39 (463)
238 PRK13748 putative mercuric red 98.2 1.1E-06 2.5E-11 91.5 5.4 41 27-68 97-137 (561)
239 KOG2960 Protein involved in th 98.2 3.6E-07 7.8E-12 77.8 1.1 66 28-103 76-143 (328)
240 PRK07846 mycothione reductase; 98.2 1.8E-05 4E-10 79.8 13.6 38 28-68 1-38 (451)
241 PRK13800 putative oxidoreducta 98.2 1.5E-05 3.4E-10 87.0 13.9 36 27-62 12-47 (897)
242 PRK14727 putative mercuric red 98.2 1.5E-06 3.2E-11 88.5 5.5 42 27-68 15-56 (479)
243 PRK09564 coenzyme A disulfide 98.2 8.4E-06 1.8E-10 82.5 10.8 44 237-280 69-115 (444)
244 PRK12778 putative bifunctional 98.2 1.8E-06 3.9E-11 92.8 6.1 43 26-68 429-471 (752)
245 PRK12810 gltD glutamate syntha 98.2 2.5E-06 5.4E-11 86.6 6.2 43 26-68 141-183 (471)
246 COG0493 GltD NADPH-dependent g 98.2 1.8E-06 3.8E-11 85.8 4.7 42 28-69 123-164 (457)
247 PRK05335 tRNA (uracil-5-)-meth 98.2 2.7E-06 5.8E-11 82.8 5.5 37 28-64 2-38 (436)
248 PRK12809 putative oxidoreducta 98.1 3E-06 6.5E-11 89.2 6.0 42 27-68 309-350 (639)
249 PRK12814 putative NADPH-depend 98.1 3.2E-06 6.8E-11 89.1 6.1 42 27-68 192-233 (652)
250 PRK06567 putative bifunctional 98.1 2.5E-06 5.4E-11 90.5 5.3 40 26-65 381-420 (1028)
251 KOG1439 RAB proteins geranylge 98.1 6.5E-05 1.4E-09 70.8 13.9 45 26-70 2-46 (440)
252 TIGR01423 trypano_reduc trypan 98.1 3E-06 6.5E-11 85.9 5.4 42 27-68 2-52 (486)
253 TIGR01318 gltD_gamma_fam gluta 98.1 3.6E-06 7.8E-11 85.2 5.9 42 27-68 140-181 (467)
254 PRK11749 dihydropyrimidine deh 98.1 3.4E-06 7.5E-11 85.4 5.7 43 26-68 138-180 (457)
255 PRK09754 phenylpropionate diox 98.1 2.6E-05 5.6E-10 77.5 11.8 42 237-279 199-240 (396)
256 PRK04965 NADH:flavorubredoxin 98.1 3.4E-05 7.4E-10 76.2 11.9 42 238-279 197-238 (377)
257 PRK09754 phenylpropionate diox 98.1 2.5E-05 5.4E-10 77.6 11.0 42 237-280 71-112 (396)
258 TIGR01372 soxA sarcosine oxida 98.1 3.9E-06 8.5E-11 92.5 5.7 43 27-69 162-204 (985)
259 KOG0399 Glutamate synthase [Am 98.1 3.8E-06 8.2E-11 87.7 5.1 43 26-68 1783-1825(2142)
260 TIGR03197 MnmC_Cterm tRNA U-34 98.1 1.1E-05 2.4E-10 79.8 7.9 59 222-280 132-190 (381)
261 PRK07846 mycothione reductase; 98.0 4.3E-05 9.3E-10 77.1 12.1 43 237-279 219-261 (451)
262 PLN02546 glutathione reductase 98.0 4.9E-06 1.1E-10 85.5 5.3 42 27-68 78-128 (558)
263 COG0029 NadB Aspartate oxidase 98.0 7.9E-05 1.7E-09 72.5 12.9 32 30-62 9-40 (518)
264 COG4529 Uncharacterized protei 98.0 3.8E-05 8.2E-10 74.7 10.7 39 28-66 1-42 (474)
265 TIGR01350 lipoamide_DH dihydro 98.0 5E-05 1.1E-09 77.2 12.3 43 237-279 224-268 (461)
266 PRK05249 soluble pyridine nucl 98.0 5.2E-05 1.1E-09 77.1 12.3 43 237-279 229-271 (461)
267 KOG2665 Predicted FAD-dependen 98.0 2E-05 4.4E-10 71.6 7.7 44 25-68 45-90 (453)
268 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 6.8E-06 1.5E-10 80.5 5.1 37 29-65 1-37 (433)
269 TIGR01317 GOGAT_sm_gam glutama 98.0 8.2E-06 1.8E-10 82.9 5.9 42 27-68 142-183 (485)
270 PTZ00153 lipoamide dehydrogena 98.0 7.5E-06 1.6E-10 85.4 5.3 41 28-68 116-157 (659)
271 PRK06416 dihydrolipoamide dehy 98.0 6.4E-05 1.4E-09 76.4 11.9 43 237-279 226-271 (462)
272 PF00732 GMC_oxred_N: GMC oxid 98.0 5.9E-06 1.3E-10 78.7 4.0 34 29-62 1-35 (296)
273 PRK12770 putative glutamate sy 98.0 1.2E-05 2.6E-10 78.5 6.0 44 25-68 15-58 (352)
274 PRK12771 putative glutamate sy 97.9 1.2E-05 2.6E-10 83.6 6.1 44 25-68 134-177 (564)
275 TIGR03452 mycothione_red mycot 97.9 9.1E-05 2E-09 74.8 12.4 43 237-279 222-264 (452)
276 TIGR02352 thiamin_ThiO glycine 97.9 0.0013 2.7E-08 63.9 19.8 58 223-281 135-194 (337)
277 COG0445 GidA Flavin-dependent 97.9 9E-05 1.9E-09 72.8 10.8 45 26-70 2-46 (621)
278 TIGR01438 TGR thioredoxin and 97.9 1.2E-05 2.6E-10 81.7 5.1 41 28-68 2-50 (484)
279 COG5044 MRS6 RAB proteins gera 97.9 0.00012 2.6E-09 68.2 11.0 43 28-70 6-48 (434)
280 PLN02507 glutathione reductase 97.9 0.00012 2.7E-09 74.7 12.4 43 237-279 257-299 (499)
281 PRK07251 pyridine nucleotide-d 97.9 0.00012 2.6E-09 73.9 12.2 36 28-63 157-192 (438)
282 PF07992 Pyr_redox_2: Pyridine 97.9 1.3E-05 2.7E-10 71.6 4.6 32 30-61 1-32 (201)
283 TIGR01421 gluta_reduc_1 glutat 97.9 0.00013 2.8E-09 73.7 12.4 36 28-63 166-201 (450)
284 PRK06116 glutathione reductase 97.9 0.00013 2.8E-09 73.9 12.4 42 237-278 221-263 (450)
285 TIGR02462 pyranose_ox pyranose 97.9 1.4E-05 2.9E-10 81.2 5.1 37 29-65 1-37 (544)
286 COG3075 GlpB Anaerobic glycero 97.9 1.7E-05 3.6E-10 72.6 4.7 33 28-60 2-34 (421)
287 KOG1298 Squalene monooxygenase 97.9 1.6E-05 3.5E-10 74.2 4.6 36 25-60 42-77 (509)
288 PRK07845 flavoprotein disulfid 97.9 0.00015 3.3E-09 73.6 12.2 43 237-279 231-273 (466)
289 KOG0042 Glycerol-3-phosphate d 97.9 0.00048 1E-08 67.5 14.6 50 17-66 56-105 (680)
290 TIGR01424 gluta_reduc_2 glutat 97.8 0.00018 3.9E-09 72.7 12.4 42 237-278 220-261 (446)
291 PRK13984 putative oxidoreducta 97.8 2.6E-05 5.5E-10 82.0 6.1 43 26-68 281-323 (604)
292 PRK05329 anaerobic glycerol-3- 97.8 2.3E-05 4.9E-10 77.5 5.2 34 28-61 2-35 (422)
293 PRK02106 choline dehydrogenase 97.8 2.1E-05 4.6E-10 81.7 5.1 37 25-61 2-39 (560)
294 PRK07818 dihydrolipoamide dehy 97.8 0.00022 4.7E-09 72.6 12.0 35 28-62 172-206 (466)
295 PTZ00318 NADH dehydrogenase-li 97.8 0.00018 3.8E-09 72.2 11.1 36 26-61 8-43 (424)
296 COG4716 Myosin-crossreactive a 97.8 0.00021 4.6E-09 66.7 10.5 54 26-79 20-79 (587)
297 TIGR02374 nitri_red_nirB nitri 97.8 0.00014 3E-09 78.5 10.8 42 237-280 67-108 (785)
298 TIGR02053 MerA mercuric reduct 97.8 0.00024 5.1E-09 72.3 12.0 36 28-63 166-201 (463)
299 PRK05976 dihydrolipoamide dehy 97.8 0.00027 5.9E-09 72.0 12.3 35 28-62 180-214 (472)
300 TIGR02374 nitri_red_nirB nitri 97.8 0.00017 3.8E-09 77.7 11.3 42 237-278 195-236 (785)
301 COG0446 HcaD Uncharacterized N 97.7 0.00023 5E-09 71.2 11.4 39 28-66 136-174 (415)
302 PRK06370 mercuric reductase; V 97.7 0.00029 6.3E-09 71.6 12.2 36 28-63 171-206 (463)
303 PRK06327 dihydrolipoamide dehy 97.7 0.00027 5.9E-09 72.0 11.8 35 28-62 183-217 (475)
304 PRK04965 NADH:flavorubredoxin 97.7 0.00019 4.1E-09 70.9 10.1 34 28-61 2-37 (377)
305 PRK06912 acoL dihydrolipoamide 97.7 0.00038 8.1E-09 70.6 12.4 35 28-62 170-204 (458)
306 KOG1800 Ferredoxin/adrenodoxin 97.7 5.3E-05 1.2E-09 70.8 5.3 44 26-69 18-63 (468)
307 PRK06115 dihydrolipoamide dehy 97.7 0.00041 8.8E-09 70.5 12.2 37 27-63 173-209 (466)
308 TIGR03385 CoA_CoA_reduc CoA-di 97.7 0.00038 8.3E-09 70.0 11.7 36 27-62 136-171 (427)
309 PRK14989 nitrite reductase sub 97.7 0.00017 3.7E-09 77.9 9.5 42 237-280 72-113 (847)
310 PRK09564 coenzyme A disulfide 97.7 0.00042 9.1E-09 70.1 11.9 36 27-62 148-183 (444)
311 PRK14989 nitrite reductase sub 97.7 0.00036 7.8E-09 75.4 11.7 42 237-278 200-243 (847)
312 PRK08010 pyridine nucleotide-d 97.6 0.00054 1.2E-08 69.2 12.1 42 237-279 212-253 (441)
313 TIGR03169 Nterm_to_SelD pyridi 97.6 0.00014 3.1E-09 71.4 7.7 48 425-474 270-320 (364)
314 TIGR01423 trypano_reduc trypan 97.6 0.00064 1.4E-08 69.1 12.4 42 237-278 244-286 (486)
315 KOG1335 Dihydrolipoamide dehyd 97.6 0.0001 2.2E-09 69.0 6.0 42 27-68 38-79 (506)
316 PRK06467 dihydrolipoamide dehy 97.6 0.0006 1.3E-08 69.4 12.0 36 28-63 174-209 (471)
317 PRK13512 coenzyme A disulfide 97.6 0.00052 1.1E-08 69.1 11.3 35 28-62 148-182 (438)
318 PTZ00052 thioredoxin reductase 97.6 0.00078 1.7E-08 69.0 12.3 43 237-279 235-277 (499)
319 PF13434 K_oxygenase: L-lysine 97.6 0.00027 5.8E-09 68.2 8.3 36 27-62 1-37 (341)
320 KOG3855 Monooxygenase involved 97.6 0.0014 2.9E-08 62.4 12.4 138 236-386 165-310 (481)
321 PRK14727 putative mercuric red 97.6 0.00091 2E-08 68.2 12.4 43 237-280 241-283 (479)
322 TIGR03378 glycerol3P_GlpB glyc 97.5 0.00011 2.4E-09 71.9 4.9 51 229-279 267-321 (419)
323 PRK14694 putative mercuric red 97.5 0.0011 2.3E-08 67.5 12.1 42 237-279 231-272 (468)
324 PRK06292 dihydrolipoamide dehy 97.5 0.0013 2.8E-08 66.9 12.5 37 27-63 168-204 (460)
325 PTZ00058 glutathione reductase 97.5 0.0013 2.8E-08 67.8 12.3 35 28-62 237-271 (561)
326 PRK13748 putative mercuric red 97.5 0.0011 2.4E-08 69.2 12.0 42 237-279 323-364 (561)
327 TIGR01438 TGR thioredoxin and 97.4 0.0014 3E-08 66.8 12.2 32 28-59 180-211 (484)
328 COG2303 BetA Choline dehydroge 97.4 0.00013 2.8E-09 75.0 4.4 36 25-60 4-39 (542)
329 TIGR01810 betA choline dehydro 97.3 0.00016 3.6E-09 74.7 4.0 32 30-61 1-33 (532)
330 TIGR03377 glycerol3P_GlpA glyc 97.3 0.045 9.7E-07 56.5 21.7 52 229-280 132-190 (516)
331 KOG2852 Possible oxidoreductas 97.3 7.5E-05 1.6E-09 67.2 0.8 42 25-66 7-54 (380)
332 PTZ00318 NADH dehydrogenase-li 97.3 0.002 4.3E-08 64.7 11.2 38 237-278 241-278 (424)
333 PTZ00153 lipoamide dehydrogena 97.3 0.0025 5.4E-08 66.9 12.0 36 28-63 312-347 (659)
334 PRK13512 coenzyme A disulfide 97.3 0.0003 6.5E-09 70.9 5.1 37 28-64 1-39 (438)
335 PLN02546 glutathione reductase 97.3 0.0027 5.8E-08 65.6 12.0 36 27-62 251-286 (558)
336 PLN02785 Protein HOTHEAD 97.3 0.00023 4.9E-09 73.8 3.9 35 26-61 53-87 (587)
337 TIGR03140 AhpF alkyl hydropero 97.1 0.0033 7.1E-08 64.8 10.9 35 27-61 351-385 (515)
338 KOG2311 NAD/FAD-utilizing prot 96.9 0.0072 1.6E-07 58.6 10.1 45 25-69 25-69 (679)
339 KOG0405 Pyridine nucleotide-di 96.9 0.0013 2.9E-08 60.9 4.6 42 27-68 19-60 (478)
340 COG1206 Gid NAD(FAD)-utilizing 96.8 0.0011 2.4E-08 61.0 3.9 36 28-63 3-38 (439)
341 KOG4716 Thioredoxin reductase 96.8 0.0023 4.9E-08 59.2 5.4 36 25-60 16-51 (503)
342 TIGR03862 flavo_PP4765 unchara 96.7 0.034 7.5E-07 54.1 13.0 57 220-278 76-139 (376)
343 PF13434 K_oxygenase: L-lysine 96.5 0.05 1.1E-06 52.6 12.6 36 25-60 187-224 (341)
344 COG3634 AhpF Alkyl hydroperoxi 96.4 0.0021 4.6E-08 59.6 2.7 40 25-66 208-247 (520)
345 KOG1335 Dihydrolipoamide dehyd 96.4 0.018 3.8E-07 54.5 8.3 38 28-65 211-248 (506)
346 KOG0404 Thioredoxin reductase 96.3 0.0065 1.4E-07 52.9 5.0 44 26-69 6-53 (322)
347 PF01210 NAD_Gly3P_dh_N: NAD-d 96.3 0.0045 9.8E-08 52.6 3.9 32 30-61 1-32 (157)
348 PRK11749 dihydropyrimidine deh 96.2 0.045 9.8E-07 55.6 11.4 34 27-60 272-306 (457)
349 KOG1238 Glucose dehydrogenase/ 96.2 0.0051 1.1E-07 62.4 4.3 38 25-62 54-92 (623)
350 TIGR03169 Nterm_to_SelD pyridi 96.2 0.046 9.9E-07 53.7 11.1 38 237-278 204-241 (364)
351 PRK02705 murD UDP-N-acetylmura 96.1 0.0058 1.3E-07 62.1 4.4 34 30-63 2-35 (459)
352 PRK01438 murD UDP-N-acetylmura 96.1 0.0074 1.6E-07 61.7 5.1 35 27-61 15-49 (480)
353 KOG1336 Monodehydroascorbate/f 95.9 0.067 1.5E-06 52.4 10.2 45 237-281 268-314 (478)
354 PF02737 3HCDH_N: 3-hydroxyacy 95.9 0.011 2.4E-07 51.5 4.5 31 30-60 1-31 (180)
355 COG3486 IucD Lysine/ornithine 95.8 0.1 2.3E-06 50.1 10.8 37 25-61 2-39 (436)
356 PF03721 UDPG_MGDP_dh_N: UDP-g 95.7 0.01 2.2E-07 51.8 3.6 33 29-61 1-33 (185)
357 PRK12814 putative NADPH-depend 95.7 0.12 2.6E-06 54.8 12.2 35 26-60 321-356 (652)
358 KOG3923 D-aspartate oxidase [A 95.7 0.0085 1.8E-07 54.7 3.0 34 27-60 2-42 (342)
359 KOG4405 GDP dissociation inhib 95.6 0.011 2.3E-07 56.3 3.5 49 25-73 5-53 (547)
360 PRK06129 3-hydroxyacyl-CoA deh 95.4 0.018 4E-07 55.0 4.6 33 29-61 3-35 (308)
361 PF02558 ApbA: Ketopantoate re 95.4 0.023 5E-07 47.9 4.7 31 31-61 1-31 (151)
362 COG1249 Lpd Pyruvate/2-oxoglut 95.3 0.025 5.5E-07 56.5 5.3 40 238-277 228-269 (454)
363 TIGR01372 soxA sarcosine oxida 95.3 0.14 3E-06 57.1 11.4 34 27-60 316-350 (985)
364 PF01262 AlaDh_PNT_C: Alanine 95.3 0.028 6.2E-07 48.3 4.8 34 27-60 19-52 (168)
365 PF13738 Pyr_redox_3: Pyridine 95.1 0.028 6.2E-07 49.9 4.6 35 27-61 166-200 (203)
366 PRK07819 3-hydroxybutyryl-CoA 95.1 0.03 6.5E-07 52.8 4.6 34 28-61 5-38 (286)
367 COG1251 NirB NAD(P)H-nitrite r 95.0 0.083 1.8E-06 54.6 7.8 42 238-279 201-242 (793)
368 PRK08293 3-hydroxybutyryl-CoA 95.0 0.032 7E-07 52.7 4.7 32 29-60 4-35 (287)
369 PRK14106 murD UDP-N-acetylmura 94.9 0.033 7.2E-07 56.4 5.0 34 28-61 5-38 (450)
370 PRK07530 3-hydroxybutyryl-CoA 94.9 0.04 8.6E-07 52.3 5.2 34 27-60 3-36 (292)
371 PRK07066 3-hydroxybutyryl-CoA 94.9 0.038 8.2E-07 52.7 4.9 35 27-61 6-40 (321)
372 cd01080 NAD_bind_m-THF_DH_Cycl 94.8 0.047 1E-06 46.7 4.8 35 26-60 42-77 (168)
373 COG0771 MurD UDP-N-acetylmuram 94.8 0.073 1.6E-06 52.8 6.8 77 28-104 7-96 (448)
374 KOG2755 Oxidoreductase [Genera 94.8 0.018 3.9E-07 51.6 2.2 32 30-61 1-34 (334)
375 PRK06249 2-dehydropantoate 2-r 94.7 0.055 1.2E-06 51.8 5.4 35 27-61 4-38 (313)
376 COG0569 TrkA K+ transport syst 94.6 0.045 9.8E-07 49.5 4.5 65 29-103 1-65 (225)
377 PRK09260 3-hydroxybutyryl-CoA 94.6 0.042 9E-07 52.0 4.4 33 29-61 2-34 (288)
378 PRK05675 sdhA succinate dehydr 94.5 0.57 1.2E-05 48.9 12.8 49 230-278 131-187 (570)
379 PLN02545 3-hydroxybutyryl-CoA 94.5 0.057 1.2E-06 51.3 5.1 36 26-61 2-37 (295)
380 PF01488 Shikimate_DH: Shikima 94.5 0.08 1.7E-06 43.6 5.3 34 27-60 11-45 (135)
381 KOG3851 Sulfide:quinone oxidor 94.4 0.035 7.6E-07 51.3 3.2 37 25-61 36-74 (446)
382 PRK06130 3-hydroxybutyryl-CoA 94.4 0.06 1.3E-06 51.6 4.9 36 26-61 2-37 (311)
383 PRK05708 2-dehydropantoate 2-r 94.3 0.067 1.5E-06 51.0 5.1 33 28-60 2-34 (305)
384 PRK14618 NAD(P)H-dependent gly 94.3 0.068 1.5E-06 51.6 5.1 36 26-61 2-37 (328)
385 PRK08229 2-dehydropantoate 2-r 94.2 0.067 1.5E-06 52.0 4.9 32 29-60 3-34 (341)
386 COG1004 Ugd Predicted UDP-gluc 94.2 0.061 1.3E-06 51.5 4.3 33 29-61 1-33 (414)
387 TIGR01763 MalateDH_bact malate 94.2 0.077 1.7E-06 50.5 5.1 33 29-61 2-35 (305)
388 PRK05808 3-hydroxybutyryl-CoA 94.1 0.064 1.4E-06 50.6 4.5 32 29-60 4-35 (282)
389 PRK15317 alkyl hydroperoxide r 94.1 0.072 1.6E-06 55.0 5.2 36 27-62 350-385 (517)
390 TIGR01470 cysG_Nterm siroheme 94.1 0.082 1.8E-06 47.0 4.8 35 27-61 8-42 (205)
391 PF13241 NAD_binding_7: Putati 94.1 0.062 1.3E-06 41.9 3.6 34 27-60 6-39 (103)
392 cd05292 LDH_2 A subgroup of L- 94.0 0.077 1.7E-06 50.6 4.7 32 30-61 2-35 (308)
393 TIGR03143 AhpF_homolog putativ 93.9 0.08 1.7E-06 55.1 5.2 37 27-63 142-178 (555)
394 PRK10262 thioredoxin reductase 93.9 0.09 1.9E-06 50.6 5.2 35 27-61 145-179 (321)
395 PRK04148 hypothetical protein; 93.9 0.063 1.4E-06 43.6 3.3 34 28-62 17-50 (134)
396 PRK06035 3-hydroxyacyl-CoA deh 93.9 0.075 1.6E-06 50.3 4.5 33 29-61 4-36 (291)
397 TIGR01316 gltA glutamate synth 93.9 0.086 1.9E-06 53.3 5.1 35 27-61 271-305 (449)
398 TIGR00518 alaDH alanine dehydr 93.8 0.087 1.9E-06 51.6 4.9 34 27-60 166-199 (370)
399 PRK06522 2-dehydropantoate 2-r 93.8 0.079 1.7E-06 50.5 4.6 31 30-60 2-32 (304)
400 COG0686 Ald Alanine dehydrogen 93.8 0.065 1.4E-06 49.4 3.7 34 27-60 167-200 (371)
401 PRK12921 2-dehydropantoate 2-r 93.8 0.083 1.8E-06 50.4 4.7 30 30-59 2-31 (305)
402 PRK11064 wecC UDP-N-acetyl-D-m 93.7 0.073 1.6E-06 53.1 4.3 34 28-61 3-36 (415)
403 PRK12831 putative oxidoreducta 93.6 0.1 2.2E-06 52.9 5.2 36 26-61 279-314 (464)
404 PRK04690 murD UDP-N-acetylmura 93.5 0.091 2E-06 53.4 4.6 34 28-61 8-41 (468)
405 PRK12770 putative glutamate sy 93.4 0.12 2.7E-06 50.4 5.2 33 28-60 172-205 (352)
406 TIGR02354 thiF_fam2 thiamine b 93.4 0.12 2.6E-06 45.7 4.6 34 27-60 20-54 (200)
407 PRK00141 murD UDP-N-acetylmura 93.3 0.11 2.5E-06 52.8 5.0 39 22-60 9-47 (473)
408 PRK06718 precorrin-2 dehydroge 93.3 0.14 3E-06 45.4 4.9 34 27-60 9-42 (202)
409 TIGR01292 TRX_reduct thioredox 93.2 0.13 2.9E-06 48.7 5.1 35 27-61 140-174 (300)
410 PF03446 NAD_binding_2: NAD bi 93.1 0.14 3E-06 43.8 4.5 34 28-61 1-34 (163)
411 PRK01710 murD UDP-N-acetylmura 93.1 0.12 2.5E-06 52.5 4.7 34 28-61 14-47 (458)
412 PRK00094 gpsA NAD(P)H-dependen 93.1 0.13 2.9E-06 49.5 4.9 32 29-60 2-33 (325)
413 PRK14619 NAD(P)H-dependent gly 93.0 0.16 3.6E-06 48.5 5.2 35 27-61 3-37 (308)
414 KOG1336 Monodehydroascorbate/f 92.9 0.76 1.7E-05 45.3 9.6 39 238-278 141-179 (478)
415 TIGR03026 NDP-sugDHase nucleot 92.9 0.11 2.4E-06 51.9 4.1 33 30-62 2-34 (411)
416 PRK09424 pntA NAD(P) transhydr 92.8 0.14 2.9E-06 52.0 4.5 34 27-60 164-197 (509)
417 PRK04308 murD UDP-N-acetylmura 92.8 0.16 3.6E-06 51.3 5.2 35 28-62 5-39 (445)
418 PRK00421 murC UDP-N-acetylmura 92.7 0.13 2.8E-06 52.3 4.4 38 25-62 4-42 (461)
419 KOG2304 3-hydroxyacyl-CoA dehy 92.7 0.11 2.4E-06 45.5 3.2 39 23-61 6-44 (298)
420 PRK07531 bifunctional 3-hydrox 92.7 0.15 3.3E-06 52.1 4.9 33 29-61 5-37 (495)
421 COG1748 LYS9 Saccharopine dehy 92.7 0.16 3.5E-06 49.3 4.7 33 28-60 1-34 (389)
422 PRK03369 murD UDP-N-acetylmura 92.6 0.16 3.5E-06 51.9 4.9 34 27-60 11-44 (488)
423 PRK06719 precorrin-2 dehydroge 92.6 0.21 4.5E-06 42.3 4.7 32 27-58 12-43 (157)
424 PRK02472 murD UDP-N-acetylmura 92.5 0.16 3.5E-06 51.4 4.7 34 28-61 5-38 (447)
425 PTZ00082 L-lactate dehydrogena 92.5 0.22 4.8E-06 47.7 5.3 38 25-62 3-41 (321)
426 PLN02353 probable UDP-glucose 92.5 0.16 3.4E-06 51.3 4.5 33 29-61 2-36 (473)
427 PRK01368 murD UDP-N-acetylmura 92.4 0.16 3.4E-06 51.4 4.5 33 27-60 5-37 (454)
428 PRK06223 malate dehydrogenase; 92.4 0.21 4.5E-06 47.8 5.0 34 28-61 2-36 (307)
429 cd05191 NAD_bind_amino_acid_DH 92.3 0.28 6.1E-06 36.7 4.7 34 26-59 21-55 (86)
430 PRK08306 dipicolinate synthase 92.2 0.22 4.8E-06 47.1 5.0 35 27-61 151-185 (296)
431 PRK12549 shikimate 5-dehydroge 92.2 0.21 4.5E-06 47.0 4.7 35 26-60 125-160 (284)
432 COG3634 AhpF Alkyl hydroperoxi 92.2 0.12 2.7E-06 48.3 3.0 34 27-60 353-386 (520)
433 PRK08268 3-hydroxy-acyl-CoA de 92.1 0.22 4.7E-06 51.0 5.1 36 27-62 6-41 (507)
434 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.0 0.21 4.6E-06 51.0 4.9 35 27-61 4-38 (503)
435 PRK14620 NAD(P)H-dependent gly 92.0 0.22 4.7E-06 48.1 4.8 31 30-60 2-32 (326)
436 cd05311 NAD_bind_2_malic_enz N 91.7 0.28 6.1E-06 44.3 4.8 34 27-60 24-60 (226)
437 cd00401 AdoHcyase S-adenosyl-L 91.6 0.27 5.8E-06 48.5 4.9 36 26-61 200-235 (413)
438 cd05293 LDH_1 A subgroup of L- 91.6 0.3 6.6E-06 46.5 5.1 35 27-61 2-38 (312)
439 PRK12778 putative bifunctional 91.6 0.28 6E-06 53.2 5.5 35 27-61 569-604 (752)
440 PRK07417 arogenate dehydrogena 91.6 0.24 5.2E-06 46.5 4.4 32 30-61 2-33 (279)
441 cd05291 HicDH_like L-2-hydroxy 91.4 0.28 6.2E-06 46.7 4.7 32 30-61 2-35 (306)
442 PRK02006 murD UDP-N-acetylmura 91.4 0.25 5.3E-06 50.8 4.6 34 28-61 7-40 (498)
443 TIGR00561 pntA NAD(P) transhyd 91.1 0.32 6.9E-06 49.3 4.9 34 27-60 163-196 (511)
444 cd01075 NAD_bind_Leu_Phe_Val_D 91.1 0.36 7.8E-06 42.8 4.8 34 27-60 27-60 (200)
445 PRK03803 murD UDP-N-acetylmura 91.0 0.32 6.9E-06 49.3 4.9 37 25-61 3-39 (448)
446 PF00899 ThiF: ThiF family; I 91.0 0.26 5.6E-06 40.6 3.5 33 28-60 2-35 (135)
447 PRK15057 UDP-glucose 6-dehydro 90.8 0.32 6.9E-06 47.9 4.6 31 30-61 2-32 (388)
448 PF00056 Ldh_1_N: lactate/mala 90.6 0.49 1.1E-05 39.2 4.9 33 29-61 1-36 (141)
449 PRK11730 fadB multifunctional 90.6 0.33 7.1E-06 52.1 4.8 34 28-61 313-346 (715)
450 TIGR03378 glycerol3P_GlpB glyc 90.5 0.66 1.4E-05 45.8 6.4 33 29-61 1-33 (419)
451 TIGR02853 spore_dpaA dipicolin 90.5 0.41 8.9E-06 45.1 4.8 35 27-61 150-184 (287)
452 TIGR02437 FadB fatty oxidation 90.5 0.35 7.6E-06 51.8 4.8 35 27-61 312-346 (714)
453 TIGR00507 aroE shikimate 5-deh 90.4 0.42 9.1E-06 44.7 4.8 35 26-60 115-149 (270)
454 PRK15116 sulfur acceptor prote 90.4 0.44 9.5E-06 44.1 4.8 34 27-60 29-63 (268)
455 PRK12475 thiamine/molybdopteri 90.4 0.4 8.7E-06 46.2 4.7 34 27-60 23-57 (338)
456 PF02254 TrkA_N: TrkA-N domain 90.3 0.51 1.1E-05 37.5 4.7 31 31-61 1-31 (116)
457 PTZ00117 malate dehydrogenase; 90.3 0.46 9.9E-06 45.6 5.0 35 27-61 4-39 (319)
458 PRK00066 ldh L-lactate dehydro 90.2 0.51 1.1E-05 45.1 5.3 35 27-61 5-41 (315)
459 COG1250 FadB 3-hydroxyacyl-CoA 90.2 0.4 8.7E-06 45.1 4.4 33 28-60 3-35 (307)
460 PRK00683 murD UDP-N-acetylmura 90.2 0.38 8.3E-06 48.2 4.6 33 29-61 4-36 (418)
461 PRK01390 murD UDP-N-acetylmura 90.1 0.34 7.4E-06 49.2 4.3 33 28-60 9-41 (460)
462 TIGR01915 npdG NADPH-dependent 90.1 0.44 9.5E-06 43.0 4.6 31 30-60 2-33 (219)
463 cd01339 LDH-like_MDH L-lactate 90.0 0.36 7.9E-06 45.9 4.1 31 31-61 1-32 (300)
464 PRK07688 thiamine/molybdopteri 90.0 0.47 1E-05 45.8 4.9 34 27-60 23-57 (339)
465 COG1893 ApbA Ketopantoate redu 90.0 0.35 7.5E-06 46.0 3.9 33 29-61 1-33 (307)
466 cd01078 NAD_bind_H4MPT_DH NADP 89.9 0.52 1.1E-05 41.6 4.8 34 27-60 27-61 (194)
467 PF00670 AdoHcyase_NAD: S-aden 89.8 0.42 9.1E-06 40.2 3.8 37 25-61 20-56 (162)
468 PRK12548 shikimate 5-dehydroge 89.7 0.58 1.3E-05 44.2 5.2 34 27-60 125-159 (289)
469 PRK14573 bifunctional D-alanyl 89.6 0.4 8.7E-06 52.4 4.6 36 26-61 2-38 (809)
470 PRK12779 putative bifunctional 89.6 0.48 1E-05 52.4 5.1 35 27-61 446-480 (944)
471 PRK11199 tyrA bifunctional cho 89.5 0.48 1E-05 46.5 4.6 35 26-60 96-131 (374)
472 cd01487 E1_ThiF_like E1_ThiF_l 89.5 0.61 1.3E-05 40.3 4.7 31 30-60 1-32 (174)
473 TIGR02441 fa_ox_alpha_mit fatt 89.5 0.4 8.7E-06 51.5 4.3 35 27-61 334-368 (737)
474 PRK08644 thiamine biosynthesis 89.5 0.63 1.4E-05 41.6 4.9 34 27-60 27-61 (212)
475 PLN02172 flavin-containing mon 89.4 0.41 9E-06 48.4 4.2 34 27-60 203-236 (461)
476 TIGR02440 FadJ fatty oxidation 89.4 0.42 9.2E-06 51.1 4.5 35 27-61 303-338 (699)
477 TIGR00936 ahcY adenosylhomocys 89.4 0.59 1.3E-05 46.0 5.1 36 26-61 193-228 (406)
478 PRK15461 NADH-dependent gamma- 89.3 0.49 1.1E-05 44.9 4.4 33 29-61 2-34 (296)
479 TIGR01505 tartro_sem_red 2-hyd 89.3 0.44 9.6E-06 45.1 4.1 32 30-61 1-32 (291)
480 TIGR02356 adenyl_thiF thiazole 89.2 0.63 1.4E-05 41.3 4.8 34 27-60 20-54 (202)
481 PTZ00142 6-phosphogluconate de 89.1 0.47 1E-05 47.9 4.3 35 28-62 1-35 (470)
482 cd01065 NAD_bind_Shikimate_DH 89.1 0.7 1.5E-05 38.9 4.8 35 27-61 18-53 (155)
483 PRK12550 shikimate 5-dehydroge 89.1 1.2 2.7E-05 41.4 6.8 35 27-61 121-156 (272)
484 PRK11154 fadJ multifunctional 88.8 0.49 1.1E-05 50.7 4.4 35 27-61 308-343 (708)
485 PRK00258 aroE shikimate 5-dehy 88.8 0.67 1.5E-05 43.5 4.9 35 26-60 121-156 (278)
486 PRK03806 murD UDP-N-acetylmura 88.7 0.57 1.2E-05 47.3 4.7 34 28-61 6-39 (438)
487 PLN02256 arogenate dehydrogena 88.5 0.84 1.8E-05 43.4 5.3 36 25-60 33-68 (304)
488 PRK07502 cyclohexadienyl dehyd 88.3 0.72 1.6E-05 44.0 4.8 32 29-60 7-40 (307)
489 TIGR01809 Shik-DH-AROM shikima 88.2 0.76 1.7E-05 43.2 4.8 34 27-60 124-158 (282)
490 PRK12810 gltD glutamate syntha 88.2 0.71 1.5E-05 47.1 5.0 38 425-464 429-466 (471)
491 PRK05476 S-adenosyl-L-homocyst 88.1 0.74 1.6E-05 45.7 4.8 35 27-61 211-245 (425)
492 TIGR02355 moeB molybdopterin s 88.0 0.81 1.8E-05 41.8 4.7 34 27-60 23-57 (240)
493 PRK11559 garR tartronate semia 88.0 0.73 1.6E-05 43.7 4.7 33 29-61 3-35 (296)
494 cd05290 LDH_3 A subgroup of L- 88.0 0.75 1.6E-05 43.7 4.6 32 30-61 1-34 (307)
495 TIGR01317 GOGAT_sm_gam glutama 88.0 0.84 1.8E-05 46.7 5.3 36 27-62 282-318 (485)
496 PRK05562 precorrin-2 dehydroge 87.8 0.9 2E-05 40.7 4.7 33 27-59 24-56 (223)
497 PRK03815 murD UDP-N-acetylmura 87.8 0.61 1.3E-05 46.3 4.1 30 30-60 2-31 (401)
498 cd01483 E1_enzyme_family Super 87.8 0.86 1.9E-05 37.8 4.5 31 30-60 1-32 (143)
499 TIGR01087 murD UDP-N-acetylmur 87.7 0.65 1.4E-05 46.8 4.3 32 30-61 1-32 (433)
500 PRK05690 molybdopterin biosynt 87.7 0.84 1.8E-05 41.9 4.6 33 27-59 31-64 (245)
No 1
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=1.2e-56 Score=450.61 Aligned_cols=434 Identities=79% Similarity=1.286 Sum_probs=368.3
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhCCceeeeC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTS 108 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 108 (493)
.+|+|||||+|||+||++|.++|++|+|+||++++|||+.|....|+.+|.|++|+++...++++.+|++++|++..+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~~ 80 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRTS 80 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceEecc
Confidence 47999999999999999999999999999999999999999888899999999999864334568999999999987766
Q ss_pred CCCcccccCCccceeeecCCCccccHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHhcChhhhhhchHHHHH
Q 039105 109 GDNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTNDMSVLQAISIVLDRHPELRQEGLAYEVL 188 (493)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (493)
.+..+.+..+...+.++...+..++.+....+...+.++.....+......++.|+.+++..++...+.+...++.++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (435)
T PLN02268 81 GDNSVLYDHDLESYALFDMDGNQVPQELVTKVGETFERILEETEKVRDEHEEDMSLLQAISIVLERHPELRLEGLAHEVL 160 (435)
T ss_pred CCccccccccccccceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCcCHHHHHHHHhhhCcccccchHHHHHH
Confidence 55555555443344555566667777777767666766666666655555678899999988776655455567888988
Q ss_pred HHHHHHHHhhhcCCccccccccccccccccCCccccccChHHHHHHHhhcCCccccceeEEEEecCCcEEEEEcCCcEEE
Q 039105 189 QWYICRMEAWFAVDADMISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDGRNFV 268 (493)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g~~~~~~G~~~l~~~L~~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ 268 (493)
++++.++.++++.+++++|+..+.....+.+++..+.+|++.++++|.++++|++|++|++|...++++.|++.+|+++.
T Consensus 161 ~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~g~~~~~~~G~~~l~~~l~~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ 240 (435)
T PLN02268 161 QWYLCRMEGWFAADADTISLKSWDQEELLEGGHGLMVRGYDPVINTLAKGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFV 240 (435)
T ss_pred HHHHHHHHHHhCCChHhCchhhcCCccccCCCceeecCCHHHHHHHHhccCceeCCCeeEEEEEcCCcEEEEECCCcEEE
Confidence 88888888889999999998876554455666778899999999999999999999999999998888999999998899
Q ss_pred cCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCceeEEEEEcCCCCCCCCCcceeecCCCCceeeeeccccCCCC
Q 039105 269 ADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLGVVAPTSYACGYFLNLHKATGH 348 (493)
Q Consensus 269 ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 348 (493)
||+||+|+|+..++...+.+.|++|+...+.+..+.++...|+.+.|+.+||++..+.|...++...+.++.+.....+.
T Consensus 241 ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~~~~g~~~~~~~~~~~~~~~~~~~g~ 320 (435)
T PLN02268 241 ADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNVEFLGVVAPTSYGCSYFLNLHKATGH 320 (435)
T ss_pred cCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCCceeeccCCCCCCceEEEecccCCCC
Confidence 99999999999987656788899999999999999999999999999999998877777776655555566555555677
Q ss_pred cEEEEEecchhhHHhhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCccccCCCCCCChhHHHHhhCccCc
Q 039105 349 PVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDATEPVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGN 428 (493)
Q Consensus 349 ~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (493)
.+++++..+.....+.+++++++++.++++|.+++|...+|+....++|..+||+.|+|....|+.....++.+.+|+++
T Consensus 321 ~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~ 400 (435)
T PLN02268 321 PVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDATEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDN 400 (435)
T ss_pred CEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCC
Confidence 78888888888888999999999999999999999987788889999999999999999988888877788899999999
Q ss_pred eEEeeccccCcCcchhHHHHHHHHHHHHHHHHHH
Q 039105 429 LFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQKYL 462 (493)
Q Consensus 429 l~~aGd~~~~~~~g~~egA~~sg~~aa~~i~~~l 462 (493)
|||||++++..++|+||||++||++||++|++.|
T Consensus 401 l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 401 LFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred eEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 9999999998888999999999999999999764
No 2
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=4.5e-46 Score=381.92 Aligned_cols=429 Identities=33% Similarity=0.548 Sum_probs=321.1
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCC--C--ceeecccceeeCCCCCCchHHHHHHhC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSF--G--CPVDMGASWLHGVCNENPLAPLIRRLG 101 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~--g--~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (493)
...+||+|||||++||+||..|+++|++|+|+|+++++||++.|...+ | ..+|+|++|+++. ..+++..+.+++|
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~-~~npl~~la~~lg 236 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGI-HANPLGVLARQLS 236 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeecccc-ccchHHHHHHHhC
Confidence 456899999999999999999999999999999999999999998764 3 4899999999975 4456889999999
Q ss_pred CceeeeCCCCcccccCCccceeeecCCCccccHHHHHHHHHHHHHHHHHHHHhhh---cCCCCCCHHHHHHHHHhcChhh
Q 039105 102 LTLYRTSGDNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRD---EHTNDMSVLQAISIVLDRHPEL 178 (493)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~ 178 (493)
++..+.... ..++..++..++.+....+...+..++.....+.. ...++.|+.+++..+......
T Consensus 237 l~~~~~~~~-----------~~~~~~~G~~v~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~d~Sl~~~le~~~~~~~~- 304 (738)
T PLN02529 237 IPLHKVRDN-----------CPLYKPDGALVDKEIDSNIEFIFNKLLDKVTELRQIMGGFANDISLGSVLERLRQLYGV- 304 (738)
T ss_pred CCccccCCC-----------ceEEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhcccCccCCCHHHHHHHHHhhhcc-
Confidence 986543221 12233445444443332222223333333322211 245678898888754321100
Q ss_pred hhhchHHHHHHHHHHHHHhhhcCCcccccccccccc--ccccCCccccccChHHHHHHHhhcCCccccceeEEEEecCCc
Q 039105 179 RQEGLAYEVLQWYICRMEAWFAVDADMISLKCWDQE--QVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNK 256 (493)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~g~~~~~~G~~~l~~~L~~gv~i~~~~~V~~I~~~~~~ 256 (493)
.......+++.+....+....+...+.+|+..+... ....+.+..+.+|++.++++|++++.|++|++|++|..++++
T Consensus 305 ~~t~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~~~~i~GG~~~Li~aLA~~L~IrLnt~V~~I~~~~dG 384 (738)
T PLN02529 305 ARSTEERQLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCFLAGGNWRLINALCEGVPIFYGKTVDTIKYGNDG 384 (738)
T ss_pred CCCHHHHHHHHHHHHHhceecCCChHHhhhhHhhhccccccCCceEEECCcHHHHHHHHHhcCCEEcCCceeEEEEcCCe
Confidence 011123345555554444455556666777665532 223455678899999999999999999999999999998888
Q ss_pred EEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCceeEEEEEcCCCCCCCC-CcceeecCCC--
Q 039105 257 VMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNV-ELLGVVAPTS-- 333 (493)
Q Consensus 257 v~V~~~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~~~g~~~~~~-- 333 (493)
|.|++ ++++++||+||+|+|+..++...+.|.|+||+...+++..+.|+...|+++.|+.+||... .+.|......
T Consensus 385 VtV~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~ 463 (738)
T PLN02529 385 VEVIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNK 463 (738)
T ss_pred EEEEE-CCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccCCCCceEEEeccCCC
Confidence 98876 4457999999999999999876688999999999999999999999999999999999753 3555543211
Q ss_pred -CceeeeeccccCCCCcEEEEEecchhhHHhhcCCHHHHHHHHHHHHHHhCCC----CCCCcEEEEcccCCCCCCCcccc
Q 039105 334 -YACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPD----ATEPVQYLVSRWGTDPNTLGCYS 408 (493)
Q Consensus 334 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~----~~~~~~~~~~~w~~~~~~~~~~~ 408 (493)
.....+.+...+.+.+++++++.+..+..+..++++++++.++++|+++++. .++|+....++|..+||+.|+|+
T Consensus 464 ~g~~~~~~~~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS 543 (738)
T PLN02529 464 RGEFFLFYGYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYS 543 (738)
T ss_pred CceEEEEecCCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcc
Confidence 1112233334444567889999888888899999999999999999999962 24778888999999999999999
Q ss_pred CCCCCCChhHHHHhhCc-cCceEEeeccccCcCcchhHHHHHHHHHHHHHHHHHHHhCCCC
Q 039105 409 YDVVGMPGDLYERLRAP-LGNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQKYLLKQPGN 468 (493)
Q Consensus 409 ~~~~~~~~~~~~~~~~~-~~~l~~aGd~~~~~~~g~~egA~~sg~~aa~~i~~~l~~~~~~ 468 (493)
+..|+.....+..+..| .++|||||++++..++|+++||+.||.+||++|++.+.+.-.+
T Consensus 544 ~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~~~~~ 604 (738)
T PLN02529 544 HVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVARSQQSN 604 (738)
T ss_pred cCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 87776655555677777 4899999999999899999999999999999999988764443
No 3
>PLN03000 amine oxidase
Probab=100.00 E-value=5.8e-46 Score=381.42 Aligned_cols=429 Identities=32% Similarity=0.553 Sum_probs=321.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCC----CceeecccceeeCCCCCCchHHHHHHhC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSF----GCPVDMGASWLHGVCNENPLAPLIRRLG 101 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~----g~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (493)
....+|+|||||++||+||+.|.+.|++|+|+|+++++||++.|.... |+.+|+|++++++. ..+.+..+++++|
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~-~~npl~~L~~qlg 260 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGT-LGNPLGIIARQLG 260 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCC-CccHHHHHHHHcC
Confidence 356899999999999999999999999999999999999999998764 56799999999975 4556778899999
Q ss_pred CceeeeCCCCcccccCCccceeeecCCCccccHHHHHHHHHHHHHHHHHHHHhhh---cCCCCCCHHHHHHHHHhcChhh
Q 039105 102 LTLYRTSGDNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRD---EHTNDMSVLQAISIVLDRHPEL 178 (493)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~ 178 (493)
++......... ++..++..++......+...+..++..+.+++. ....+.++.+.+..+......
T Consensus 261 l~l~~~~~~~~-----------ly~~~Gk~v~~~~~~~ve~~fn~lLd~~~~lr~l~~~~~~D~SLg~aLe~~~~~~g~- 328 (881)
T PLN03000 261 SSLYKVRDKCP-----------LYRVDGKPVDPDVDLKVEVAFNQLLDKASKLRQLMGDVSMDVSLGAALETFRQVSGN- 328 (881)
T ss_pred CceeecCCCCe-----------EEEeCCcCCchhhhhhHHHHHHHHHHHHHHHHHHhcccCcCCcHHHHHHHHHHHHcc-
Confidence 98654322221 222345555544333333333344333333222 234466766654432111000
Q ss_pred hhhchHHHHHHHHHHHHHhhhcCCcccccccccccc--ccccCCccccccChHHHHHHHhhcCCccccceeEEEEecCCc
Q 039105 179 RQEGLAYEVLQWYICRMEAWFAVDADMISLKCWDQE--QVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNK 256 (493)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~g~~~~~~G~~~l~~~L~~gv~i~~~~~V~~I~~~~~~ 256 (493)
........++.+.+..++...+.....+++..+... ....+.+..+.+|++.++++|++++.|++|++|++|..++++
T Consensus 329 ~~t~e~~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~v~GG~~~LieaLa~~L~I~Ln~~Vt~I~~~~dg 408 (881)
T PLN03000 329 DVATEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALAENVPILYEKTVQTIRYGSNG 408 (881)
T ss_pred cCCHHHHHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCceEEeCCCHHHHHHHHHhhCCcccCCcEEEEEECCCe
Confidence 000011123333333333333344444454433321 123455677889999999999999999999999999999888
Q ss_pred EEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCceeEEEEEcCCCCCCCC-CcceeecCCCC-
Q 039105 257 VMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNV-ELLGVVAPTSY- 334 (493)
Q Consensus 257 v~V~~~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~~~g~~~~~~~- 334 (493)
|.|++.+ ++++||+||+|+|+..++...+.|.|+||+...+++..+.|+...|+++.|+++||... .+.|.+.++..
T Consensus 409 V~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~ 487 (881)
T PLN03000 409 VKVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNY 487 (881)
T ss_pred EEEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCC
Confidence 9988754 48999999999999999866789999999999999999999999999999999999755 45565543211
Q ss_pred --ceeeeeccccCCCCcEEEEEecchhhHHhhcCCHHHHHHHHHHHHHHhCCC----CCCCcEEEEcccCCCCCCCcccc
Q 039105 335 --ACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPD----ATEPVQYLVSRWGTDPNTLGCYS 408 (493)
Q Consensus 335 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~----~~~~~~~~~~~w~~~~~~~~~~~ 408 (493)
....+.++....+..+|++++.++.+..+.+++++++++.++++|+++|+. ..+|+....++|..+||+.|+|.
T Consensus 488 rg~~~~f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS 567 (881)
T PLN03000 488 RGEFFLFYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYS 567 (881)
T ss_pred CceeEEEeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCcccc
Confidence 122344445556778999999998888999999999999999999999962 35788889999999999999999
Q ss_pred CCCCCCChhHHHHhhCcc--CceEEeeccccCcCcchhHHHHHHHHHHHHHHHHHHHhCCCC
Q 039105 409 YDVVGMPGDLYERLRAPL--GNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQKYLLKQPGN 468 (493)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~--~~l~~aGd~~~~~~~g~~egA~~sg~~aa~~i~~~l~~~~~~ 468 (493)
+..|+.....++.+.+|+ ++|||||++++..++|+++||++||.+||.+|++.+.....+
T Consensus 568 ~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~~~~~ 629 (881)
T PLN03000 568 NVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKARGIR 629 (881)
T ss_pred CCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 888998888889999986 589999999998889999999999999999999998887666
No 4
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=2.6e-45 Score=377.44 Aligned_cols=431 Identities=33% Similarity=0.546 Sum_probs=321.1
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCCCc----eeecccceeeCCCCCCchHHHHHHh
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSFGC----PVDMGASWLHGVCNENPLAPLIRRL 100 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g~----~~d~G~~~~~~~~~~~~~~~l~~~l 100 (493)
...+.+|+|||||++||+||+.|++.|++|+|+|+++++||++.+....|. .+|.|++++++. .++.+..+++++
T Consensus 235 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~-~~npl~~l~~~l 313 (808)
T PLN02328 235 GVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGI-NGNPLGVLARQL 313 (808)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCC-CccHHHHHHHHc
Confidence 346789999999999999999999999999999999999999999877653 689999999975 455688999999
Q ss_pred CCceeeeCCCCcccccCCccceeeecCCCccccHHHHHHHHHHHHHHHHHHHHhhhc-----CCCCCCHHHHHHHHHhcC
Q 039105 101 GLTLYRTSGDNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDE-----HTNDMSVLQAISIVLDRH 175 (493)
Q Consensus 101 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~~~~~~~~~ 175 (493)
|++........ .++..++..+.......+...+..++....+++.. ...+.++.+++..+....
T Consensus 314 gl~~~~~~~~~-----------~~~~~dG~~~~~~~~~~v~~~f~~lL~~~~klr~~~~~~~~~~D~SLg~~le~~~~~~ 382 (808)
T PLN02328 314 GLPLHKVRDIC-----------PLYLPDGKAVDAEIDSKIEASFNKLLDRVCKLRQAMIEEVKSVDVNLGTALEAFRHVY 382 (808)
T ss_pred CCceEecCCCc-----------eEEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhhhhcccccCcCHHHHHHHHhhhh
Confidence 99865433221 12223444443333323333344444444333221 224678888776431110
Q ss_pred hhhhhhchHHHHHHHHHHHHHhhhcCCcccccccccccc--ccccCCccccccChHHHHHHHhhcCCccccceeEEEEec
Q 039105 176 PELRQEGLAYEVLQWYICRMEAWFAVDADMISLKCWDQE--QVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNG 253 (493)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~g~~~~~~G~~~l~~~L~~gv~i~~~~~V~~I~~~ 253 (493)
. .........++++.+.......+.....+++..+... ....+.+..+.+|++.++++|++.+.|++|++|++|...
T Consensus 383 ~-~~~~~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~~e~~G~~~~v~GG~~~Li~aLa~~L~I~ln~~V~~I~~~ 461 (808)
T PLN02328 383 K-VAEDPQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNDTFVRELAKDLPIFYERTVESIRYG 461 (808)
T ss_pred c-cCCCHHHHHHHHHHHHHHhccchhhHHHHHhhhhhccccccCCCeEEEECCcHHHHHHHHHhhCCcccCCeeEEEEEc
Confidence 0 0001112233444443333333444445554444321 122345778899999999999999999999999999998
Q ss_pred CCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCceeEEEEEcCCCCCCCC-CcceeecCC
Q 039105 254 CNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNV-ELLGVVAPT 332 (493)
Q Consensus 254 ~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~~~g~~~~~ 332 (493)
+++|.| +.+|++++||+||+|+|+..++...+.|.|+||+...+++..+.|+...|+++.|+.+||... ...|.+..+
T Consensus 462 ~dgV~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d 540 (808)
T PLN02328 462 VDGVIV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTED 540 (808)
T ss_pred CCeEEE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeec
Confidence 888877 457778999999999999999866678999999999999999999999999999999999753 344554332
Q ss_pred C-C--ceeeeeccccCCCCcEEEEEecchhhHHhhcCCHHHHHHHHHHHHHHhCCC----CCCCcEEEEcccCCCCCCCc
Q 039105 333 S-Y--ACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPD----ATEPVQYLVSRWGTDPNTLG 405 (493)
Q Consensus 333 ~-~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~----~~~~~~~~~~~w~~~~~~~~ 405 (493)
. . ....+.++....+..+|++++.+.....+.+++++++++.++++|+++|+. ..+|+....++|..++|+.|
T Consensus 541 ~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~G 620 (808)
T PLN02328 541 PSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYG 620 (808)
T ss_pred CCCCceEEEEecCCCCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCC
Confidence 1 1 112344444455678999999998888899999999999999999999962 34788889999999999999
Q ss_pred cccCCCCCCChhHHHHhhCcc--CceEEeeccccCcCcchhHHHHHHHHHHHHHHHHHHHhCCCCc
Q 039105 406 CYSYDVVGMPGDLYERLRAPL--GNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQKYLLKQPGNL 469 (493)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~--~~l~~aGd~~~~~~~g~~egA~~sg~~aa~~i~~~l~~~~~~~ 469 (493)
+|++..++.....++.+..|+ ++|||||++++..++|+++||+.||.++|++|++.++++-.+.
T Consensus 621 SYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~~~~~ 686 (808)
T PLN02328 621 SYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARRRSLCI 686 (808)
T ss_pred CCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 999888888767778888875 5999999999988889999999999999999999999886553
No 5
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.5e-46 Score=367.39 Aligned_cols=432 Identities=43% Similarity=0.699 Sum_probs=332.7
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCCCce-eecccceeeCCCCCCchHHHHHHhCCc
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSFGCP-VDMGASWLHGVCNENPLAPLIRRLGLT 103 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (493)
..++++|||||||+|||+||..|.+.|++|+|+||++|+|||++|++..+.. +|.|++++++. .++++..+.+++|++
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~-~~npl~~l~~qlgl~ 90 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGV-YNNPLALLSKQLGLE 90 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCc-CccHHHHHHHHhCcc
Confidence 5577899999999999999999999999999999999999999998887665 99999999986 445888999999999
Q ss_pred eeeeCCCCcccccCCccceeeecCCCccccHHHHHHHHHHHHHHHHHHHHhhhcC--CCCCCHHHHHHH------HHhcC
Q 039105 104 LYRTSGDNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEH--TNDMSVLQAISI------VLDRH 175 (493)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~~~~~------~~~~~ 175 (493)
..........+...+......+..... ... ...+.............. ....++.+.+.. .....
T Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~d~~~~---~~~----~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 163 (501)
T KOG0029|consen 91 LYKVRDTCPLFNENGGESDKVFDDFVE---QEF----NRLLDDASNLEQRLDNEIIGISDDSFGEALEAFLSASRLMKTL 163 (501)
T ss_pred cceecccccccccCCcccccccccchh---hhh----HHHHHHHhhhhhhhhhcccccccccHHHHHHhHHHHHHHHHhh
Confidence 877655555544443222222111111 111 011111111111111100 112233322222 11122
Q ss_pred hhhhhhchHHHHHHHHHHHHHhhhcCCccccccccccccccccCC--ccccccChHHHHHHHhhcCCccccceeEEEEec
Q 039105 176 PELRQEGLAYEVLQWYICRMEAWFAVDADMISLKCWDQEQVLSGG--HGLMVQGYDPVIKALSKDIDIRLNQRVTKISNG 253 (493)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g--~~~~~~G~~~l~~~L~~gv~i~~~~~V~~I~~~ 253 (493)
.....++...+++.+.+..+...+....++.+...+.....+.++ +..+.+|+.+++..++.|+.|++++.|.+|...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~~l~I~~~~~v~~i~~~ 243 (501)
T KOG0029|consen 164 LELLLEGEADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAEGLDIHLNKRVRKIKYG 243 (501)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCCCcceeeceeeEEEEEe
Confidence 223333455567777777777777777777777666655444433 678899999999999999999999999999986
Q ss_pred CCc-EEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCceeEEEEEcCCCCC-CCCCcceeecC
Q 039105 254 CNK-VMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFW-PNVELLGVVAP 331 (493)
Q Consensus 254 ~~~-v~V~~~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~-~~~~~~g~~~~ 331 (493)
++. +.+++.++..+++|+||+++|+..++...+.|.|+||....+++.++.++..+++.+.|+..+| .+..+.|....
T Consensus 244 ~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~ 323 (501)
T KOG0029|consen 244 DDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPE 323 (501)
T ss_pred cCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccc
Confidence 655 4566666666999999999999999877899999999999999999999999999999999999 56667777766
Q ss_pred CCCcee--eeeccccCCCCcEEEEEecchhhHHhhcCCHHHHHHHHHHHHHHhCC--CCCCCcEEEEcccCCCCCCCccc
Q 039105 332 TSYACG--YFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFP--DATEPVQYLVSRWGTDPNTLGCY 407 (493)
Q Consensus 332 ~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p--~~~~~~~~~~~~w~~~~~~~~~~ 407 (493)
+..... .|++..+..+...++++..+.....+..++++++++.+...|+++|+ ...+|++..+.+|+.+++..|+|
T Consensus 324 ~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsy 403 (501)
T KOG0029|consen 324 TSVLRGLFTFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSY 403 (501)
T ss_pred cccccchhhhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccc
Confidence 554444 55666666777788888888778889999999999999999999999 67889999999999999999999
Q ss_pred cCCCCCCChhHHHHhhCccCc-eEEeeccccCcCcchhHHHHHHHHHHHHHHHHHHHh
Q 039105 408 SYDVVGMPGDLYERLRAPLGN-LFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQKYLLK 464 (493)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~-l~~aGd~~~~~~~g~~egA~~sg~~aa~~i~~~l~~ 464 (493)
.+..++.....++.+..|+.| +|+||++++..++++|+||+.||.++|..|+..+..
T Consensus 404 s~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 404 SYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred cccCCCCChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence 988888877888999999988 999999999999999999999999999999999885
No 6
>PLN02676 polyamine oxidase
Probab=100.00 E-value=3.5e-44 Score=360.05 Aligned_cols=423 Identities=30% Similarity=0.471 Sum_probs=303.4
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeeCCCCCceeeccCCCCceeecccceeeCC--CCCCchHHHHHHhC
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASF-KVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGV--CNENPLAPLIRRLG 101 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~-~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~--~~~~~~~~l~~~lg 101 (493)
...++||+|||||++||+||++|+++|. +|+|+|+++++||++.+....|+.+|.|++++++. ...+.+.++++++|
T Consensus 23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g 102 (487)
T PLN02676 23 AKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLK 102 (487)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcC
Confidence 3457899999999999999999999998 69999999999999999888899999999999753 24567889999999
Q ss_pred CceeeeCCCCcccccCCccceeeecCCCccccHHHHHHHHHHHHHHHHHHHHhh----hcCCCCCCHHH--HHHHHHhcC
Q 039105 102 LTLYRTSGDNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVR----DEHTNDMSVLQ--AISIVLDRH 175 (493)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~--~~~~~~~~~ 175 (493)
++......... ...++..++...+......+...+..+......+. ....++.++.+ ++.....
T Consensus 103 ~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-- 172 (487)
T PLN02676 103 LRTFYSDFDNL--------SSNIYKQDGGLYPKKVVQKSMKVADASDEFGENLSISLSAKKAVDISILTAQRLFGQVP-- 172 (487)
T ss_pred CceeecCcccc--------ceeEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccHHHHHHHHhhCC--
Confidence 98664332210 01112223333333333333333333333222222 12233455532 2221110
Q ss_pred hhhhhhchHHHHHHHHHHHHHhhhcCCccccccccccccc---cccCCcccc--ccChHHHHHHHhhc-----------C
Q 039105 176 PELRQEGLAYEVLQWYICRMEAWFAVDADMISLKCWDQEQ---VLSGGHGLM--VQGYDPVIKALSKD-----------I 239 (493)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~---~~~~g~~~~--~~G~~~l~~~L~~g-----------v 239 (493)
..........+. . ...++.++++.|+..+.... ...+...++ .+|+++++++|.+. .
T Consensus 173 -----~~~~~~~~~~~~-~-~~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~ 245 (487)
T PLN02676 173 -----KTPLEMVIDYYN-Y-DYEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDP 245 (487)
T ss_pred -----CCHHHHHHHHHh-c-cceeccCccccchhhcCcccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCC
Confidence 011111111111 0 11256677777776543111 112223344 57999999999873 3
Q ss_pred CccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCceeEEEEEcCCCC
Q 039105 240 DIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVF 319 (493)
Q Consensus 240 ~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~ 319 (493)
+|++|++|++|..++++|.|++.+|++++||+||+|+|+..++...+.|.|+||+...+++..+.++...|+++.|+++|
T Consensus 246 ~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~F 325 (487)
T PLN02676 246 RLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKF 325 (487)
T ss_pred ceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCC
Confidence 59999999999998889999999999999999999999999976568999999999899999999999999999999999
Q ss_pred CCCCC-cceeecCC-C--CceeeeeccccCCCCcEEEEEecchhhHHhhcCCHHHHHHHHHHHHHHhCC-CCCCCcEEEE
Q 039105 320 WPNVE-LLGVVAPT-S--YACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFP-DATEPVQYLV 394 (493)
Q Consensus 320 ~~~~~-~~g~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p-~~~~~~~~~~ 394 (493)
|++.. ........ . +...+......+.+..+++++..+.....+.++++++..+.++++|+++|+ ....|+....
T Consensus 326 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~~~~~p~~~~~ 405 (487)
T PLN02676 326 WPSGPGTEFFLYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPNIPEATDILV 405 (487)
T ss_pred CCCCCCceeeeeeccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCcceEEe
Confidence 98632 11111111 0 001111101112344577777777777888899999999999999999996 4557888889
Q ss_pred cccCCCCCCCccccCCCCCCChhHHHHhhCccCceEEeeccccCcCcchhHHHHHHHHHHHHHHHHHHHh
Q 039105 395 SRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQKYLLK 464 (493)
Q Consensus 395 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGd~~~~~~~g~~egA~~sg~~aa~~i~~~l~~ 464 (493)
++|..+||+.|+|....|+......+.+.+|+++|||||++++..++|+|+||+.||++||++|++.+..
T Consensus 406 ~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 406 PRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKK 475 (487)
T ss_pred cccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccchHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999988889887888899999999999999999888899999999999999999998754
No 7
>PLN02976 amine oxidase
Probab=100.00 E-value=5.5e-44 Score=374.83 Aligned_cols=428 Identities=36% Similarity=0.622 Sum_probs=323.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCC-CCceeecccceeeCCCC-------CCchHHHHH
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYS-FGCPVDMGASWLHGVCN-------ENPLAPLIR 98 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~-------~~~~~~l~~ 98 (493)
..++|+|||||++|++||++|.+.|++|+|||+++++||++.+... .|+.+|.|++++++... .++...+++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~ 771 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICA 771 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHH
Confidence 4588999999999999999999999999999999999999998764 58899999999987522 134455789
Q ss_pred HhCCceeeeCCCCcccccCCccceeeecCCCccccHHHHHHHHHHHHHHHHHHHHhh-h--cCCCCCCHHHHHHHHHhcC
Q 039105 99 RLGLTLYRTSGDNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVR-D--EHTNDMSVLQAISIVLDRH 175 (493)
Q Consensus 99 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~s~~~~~~~~~~~~ 175 (493)
++|+.......... .+....+..++.+....+...+..++....... . ....+.++.+++...+...
T Consensus 772 qlGl~l~~~~~~~~----------~yd~~~G~~V~~e~~~~v~~~fn~lld~~~~~~~~~g~~a~d~SLgd~Le~~~~~~ 841 (1713)
T PLN02976 772 QLGLELTVLNSDCP----------LYDVVTGEKVPADLDEALEAEYNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRR 841 (1713)
T ss_pred hcCCccccccCCCc----------eeEccCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCccCCCHHHHHHHHHhhh
Confidence 99998644332211 122345677777777777777777665554221 1 2234667877776422100
Q ss_pred h------h-------------h-------------------hhhchHHHHHHHHHHHHHhhhcCCccccccccccc---c
Q 039105 176 P------E-------------L-------------------RQEGLAYEVLQWYICRMEAWFAVDADMISLKCWDQ---E 214 (493)
Q Consensus 176 ~------~-------------~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~---~ 214 (493)
. . + ....+.+.++.+.+......++.+++++|+..+.. +
T Consensus 842 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eVSl~~~~qd~~y 921 (1713)
T PLN02976 842 RMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEVSLPYWNQDDVY 921 (1713)
T ss_pred hccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHhhhhhhhccccc
Confidence 0 0 0 00001112222222222222356677777766552 2
Q ss_pred ccccCCccccccChHHHHHHHhhcCCccccceeEEEEec----------CCcEEEEEcCCcEEEcCEEEEecChhhhhcC
Q 039105 215 QVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNG----------CNKVMVTVEDGRNFVADAAIVTVPLGILKAN 284 (493)
Q Consensus 215 ~~~~~g~~~~~~G~~~l~~~L~~gv~i~~~~~V~~I~~~----------~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~~ 284 (493)
..+.|.++.+.+|++.|+++|++++.|++|++|++|... +++|.|++.+|++++||+||+|+|+..|+..
T Consensus 922 ~~fgG~~~rIkGGYqqLIeALAe~L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag 1001 (1713)
T PLN02976 922 GGFGGAHCMIKGGYSNVVESLAEGLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAE 1001 (1713)
T ss_pred ccCCCceEEeCCCHHHHHHHHHhhCCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhc
Confidence 223455778899999999999999999999999999874 3568999999999999999999999998765
Q ss_pred cccccCCCcHHHHHHHhhcCCCceeEEEEEcCCCCCCCC-CcceeecCC---CCceeeeeccccCCCCcEEEEEecchhh
Q 039105 285 LIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNV-ELLGVVAPT---SYACGYFLNLHKATGHPVLVYMAAGRFA 360 (493)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~~~g~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 360 (493)
.+.|.|+||+....++..+.++...|+++.|+.+||+.. .+.|..... ......+++...+.+.++|+.++.+..+
T Consensus 1002 ~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~psG~pVLVafv~G~aA 1081 (1713)
T PLN02976 1002 TIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTVGAPVLIALVVGKAA 1081 (1713)
T ss_pred ccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCCCCCEEEEEeccHhH
Confidence 578999999999999999999999999999999999864 444433221 1111223334445667789999888888
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhCCCC--CCCcEEEEcccCCCCCCCccccCCCCCCChhHHHHhhCccCc-eEEeecccc
Q 039105 361 YDLEKLSDESAANFVMMQLKKMFPDA--TEPVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGN-LFFGGEAVS 437 (493)
Q Consensus 361 ~~~~~~~~~e~~~~~~~~L~~~~p~~--~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~aGd~~~ 437 (493)
..+..++++++++.+++.|+++||.. +.|+.+..++|..+||+.|+|.+..|+.....+..+..|++| |||||++++
T Consensus 1082 reiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS 1161 (1713)
T PLN02976 1082 IDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATC 1161 (1713)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhh
Confidence 88889999999999999999999853 578888999999999999999988899877788889999876 999999999
Q ss_pred CcCcchhHHHHHHHHHHHHHHHHHHHh
Q 039105 438 MEHQGSVHGAYSAGVMAAQNCQKYLLK 464 (493)
Q Consensus 438 ~~~~g~~egA~~sg~~aa~~i~~~l~~ 464 (493)
..++|+++||+.||.++|++|+..+..
T Consensus 1162 ~~~pGTVHGAIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976 1162 KEHPDTVGGAMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHc
Confidence 989999999999999999999998865
No 8
>PLN02568 polyamine oxidase
Probab=100.00 E-value=5.7e-43 Score=353.25 Aligned_cols=434 Identities=30% Similarity=0.445 Sum_probs=309.2
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCC-----CcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHH
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDAS-----FKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRR 99 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G-----~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~ 99 (493)
|.+.+||+|||||++||+||++|++.| ++|+|||+++++||+++|....|+.+|.|++++++. .++++.+++++
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~-~~~~~~~l~~~ 80 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGI-GGSPVYKIAQE 80 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCC-CCCHHHHHHHH
Confidence 456789999999999999999999887 899999999999999999988999999999999986 46789999999
Q ss_pred hCCceeeeCCCCcccccCCccceeeecCCCccccHHHHHHHHHHHHHHHHHHHHhh---------------h------cC
Q 039105 100 LGLTLYRTSGDNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVR---------------D------EH 158 (493)
Q Consensus 100 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~------~~ 158 (493)
+|+.....+... ...-.....++..++..++.+....+...+..++....... . ..
T Consensus 81 ~g~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 157 (539)
T PLN02568 81 AGSLESDEPWEC---MDGFPDRPKTVAEGGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCES 157 (539)
T ss_pred hCCccccCccee---cccccccceEEccCCcCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccchhccchhcc
Confidence 998633211000 00000012344456667776666666666666554443111 0 00
Q ss_pred CCCCCHHHHHHHHHhc----Chh-hh---hhchHHHHHH-HHHHHHHhh--hcCCccccccccc---cccccccCCcccc
Q 039105 159 TNDMSVLQAISIVLDR----HPE-LR---QEGLAYEVLQ-WYICRMEAW--FAVDADMISLKCW---DQEQVLSGGHGLM 224 (493)
Q Consensus 159 ~~~~s~~~~~~~~~~~----~~~-~~---~~~~~~~~~~-~~~~~~~~~--~~~~~~~~s~~~~---~~~~~~~~g~~~~ 224 (493)
..+.++.+++++.+.. ... +. ..+...+... ..+.....+ .......++.... ..+....+.+..+
T Consensus 158 ~~~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i 237 (539)
T PLN02568 158 GGGGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITI 237 (539)
T ss_pred CCCCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEE
Confidence 1234677777653321 000 00 0001111111 111111111 1122333222222 2222334557788
Q ss_pred ccChHHHHHHHhhcC---CccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhcCc----ccccCCCcHHHH
Q 039105 225 VQGYDPVIKALSKDI---DIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANL----IQFEPKLPEWKL 297 (493)
Q Consensus 225 ~~G~~~l~~~L~~gv---~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~~~----~~~~~~l~~~~~ 297 (493)
.+|++.++++|.+.+ +|++|++|++|..+++++.|++.+|++++||+||+|+|+..++... +.|.|+||+..+
T Consensus 238 ~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~ 317 (539)
T PLN02568 238 AKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKT 317 (539)
T ss_pred CCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHH
Confidence 999999999999876 4999999999999888899999999899999999999999997532 468999999999
Q ss_pred HHHhhcCCCceeEEEEEcCCCCCCCC-Cc-----ceeecCCCC------ceeeee----cc-ccCCCCcEEEEEecchhh
Q 039105 298 SAIADIGVGNENKIALRFDNVFWPNV-EL-----LGVVAPTSY------ACGYFL----NL-HKATGHPVLVYMAAGRFA 360 (493)
Q Consensus 298 ~~~~~~~~~~~~~v~l~~~~~~~~~~-~~-----~g~~~~~~~------~~~~~~----~~-~~~~~~~~l~~~~~~~~~ 360 (493)
+++..+.++..+|+++.|+++||... .+ ...+..... ...++. +. ....+.++|+.++.+..+
T Consensus 318 ~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~A 397 (539)
T PLN02568 318 DAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSSVLLSWFAGKEA 397 (539)
T ss_pred HHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccccCCCCCEEEEEeccHHH
Confidence 99999999999999999999988632 11 111111000 001111 01 112356789999999889
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhCCCC-----------------------CCCcEEEEcccCCCCCCCccccCCCCCCChh
Q 039105 361 YDLEKLSDESAANFVMMQLKKMFPDA-----------------------TEPVQYLVSRWGTDPNTLGCYSYDVVGMPGD 417 (493)
Q Consensus 361 ~~~~~~~~~e~~~~~~~~L~~~~p~~-----------------------~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 417 (493)
..+.+++++++++.+++.|+++|+.- ..|+....++|..+||+.|+|++..|+....
T Consensus 398 ~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~~~~ 477 (539)
T PLN02568 398 LELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGSSGD 477 (539)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCCChh
Confidence 99999999999999999999999632 2577888999999999999999888888877
Q ss_pred HHHHhhCccC-------------ceEEeeccccCcCcchhHHHHHHHHHHHHHHHHHH
Q 039105 418 LYERLRAPLG-------------NLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQKYL 462 (493)
Q Consensus 418 ~~~~~~~~~~-------------~l~~aGd~~~~~~~g~~egA~~sg~~aa~~i~~~l 462 (493)
.+..+..|++ +|+|||++++..++++++||+.||+++|++|++..
T Consensus 478 ~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~ 535 (539)
T PLN02568 478 DLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHY 535 (539)
T ss_pred HHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 8888998875 69999999999999999999999999999998753
No 9
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.4e-40 Score=311.64 Aligned_cols=429 Identities=30% Similarity=0.411 Sum_probs=313.6
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCC-CcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhC-C
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDAS-FKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLG-L 102 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G-~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg-~ 102 (493)
.....+|+|||||+|||+||-+|.+.| .+|+|+|+.+|+|||+.|....+..+|+|++|+++ ..++.++++.++.| +
T Consensus 18 ~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG-~~gNpVY~la~~~g~~ 96 (498)
T KOG0685|consen 18 ARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHG-EEGNPVYELAKEYGDL 96 (498)
T ss_pred ccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecC-CCCChHHHHHHHhCcc
Confidence 345678999999999999999999876 57999999999999999999888899999999997 46788999999998 3
Q ss_pred ceeeeCCCCcccccCCccceeeecCCCccccHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHH-HHhcC--hh--
Q 039105 103 TLYRTSGDNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTNDMSVLQAISI-VLDRH--PE-- 177 (493)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~--~~-- 177 (493)
+.......... ....+..++..++......+.+....+......... .....|+..++.. +.... ++
T Consensus 97 ~~~~~tg~~~~-------~~~~~~~~g~~V~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~SvG~~ln~~~~~~~~~~e~~ 168 (498)
T KOG0685|consen 97 KLLEVTGPAYV-------DNFHTRSNGEVVPEELLDELNEITVTLSDKLREAEI-AHDEGSVGEYLNSEFWDELRGPENP 168 (498)
T ss_pred ceeccCCcccc-------ceeEEEecCccCcHHHHHHHHHHHHhhhhhcccccc-cCccccHHHHHHHHHHHHhcccccc
Confidence 32222111111 123344567778877766666544433322222111 1455677777764 33321 11
Q ss_pred hhhhchHHHHHHHHHHHHHhhhc-CCccccccccccccccccC--CccccccChHHHHHHHhhcC-----------Cccc
Q 039105 178 LRQEGLAYEVLQWYICRMEAWFA-VDADMISLKCWDQEQVLSG--GHGLMVQGYDPVIKALSKDI-----------DIRL 243 (493)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~--g~~~~~~G~~~l~~~L~~gv-----------~i~~ 243 (493)
-.......+++..++.......+ .+.+++|+..+..+....| .......|+..+.+-|.+.. ++++
T Consensus 169 ~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey~~~~ge~~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~ 248 (498)
T KOG0685|consen 169 EIDKTLAEEILNVYFKVECSITGADNLSEVSLRALLEYTECPGEELLIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHL 248 (498)
T ss_pred chhhHHHHHHHHHHHHHheeeeccCchhhhhhhhccceeecCchhhheechhHHHHHHHHHhccCCCcchhcCchhhhcc
Confidence 11223444555555554444333 3667888888877766666 56667789999998887522 4677
Q ss_pred cceeEEEEecC-CcEEEEEcCCcEEEcCEEEEecChhhhhcCc-ccccCCCcHHHHHHHhhcCCCceeEEEEEcCCCCCC
Q 039105 244 NQRVTKISNGC-NKVMVTVEDGRNFVADAAIVTVPLGILKANL-IQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWP 321 (493)
Q Consensus 244 ~~~V~~I~~~~-~~v~V~~~~G~~~~ad~VI~a~~~~~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~ 321 (493)
+++|.+|...+ +.+.|+..||+.+.||+||+|+++..|+.-- --|.|+||...+++|.++.++...|++|-|.+++|+
T Consensus 249 ~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp 328 (498)
T KOG0685|consen 249 NTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWP 328 (498)
T ss_pred cccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCC
Confidence 79999999875 5699999999999999999999999986421 247899999999999999999999999999999998
Q ss_pred CCC--cceeecCCC----------C---ceeeeeccccCCCCcEEEEEecchhhHHhhcCCHHHHHHHHHHHHHHhCC--
Q 039105 322 NVE--LLGVVAPTS----------Y---ACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFP-- 384 (493)
Q Consensus 322 ~~~--~~g~~~~~~----------~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p-- 384 (493)
... +.-.+.+.+ + .+...+.+.+ ..+|...+.+..+..+.+++++++.+.+...|+++++
T Consensus 329 ~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~---~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~ 405 (498)
T KOG0685|consen 329 SDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWA---PNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNP 405 (498)
T ss_pred CCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcc---hhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCC
Confidence 752 111222221 0 1111111122 2578888888888889999999999999999999995
Q ss_pred CCCCCcEEEEcccCCCCCCCccccCCCCCCChhHHHHhh--------CccCceEEeeccccCcCcchhHHHHHHHHHHHH
Q 039105 385 DATEPVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLR--------APLGNLFFGGEAVSMEHQGSVHGAYSAGVMAAQ 456 (493)
Q Consensus 385 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~aGd~~~~~~~g~~egA~~sg~~aa~ 456 (493)
.++.|..+.+..|..+|++.|+|++..++........+. ++-+.+-|||++++..++.+..||+.||.+-|+
T Consensus 406 ~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~ 485 (498)
T KOG0685|consen 406 EIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREAD 485 (498)
T ss_pred CCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHHH
Confidence 567788889999999999999999877766543333322 234689999999999888999999999999999
Q ss_pred HHHHHHHhC
Q 039105 457 NCQKYLLKQ 465 (493)
Q Consensus 457 ~i~~~l~~~ 465 (493)
++++.-.+.
T Consensus 486 RL~~~y~~~ 494 (498)
T KOG0685|consen 486 RLLEHYESS 494 (498)
T ss_pred HHHHHHHhh
Confidence 998854443
No 10
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-40 Score=310.48 Aligned_cols=414 Identities=27% Similarity=0.370 Sum_probs=287.3
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhCCcee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLY 105 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~ 105 (493)
.+.+||||||||+|||+||+.|.|+|++|+|+|+++++|||+.+.+..|-..|.|++++.+ .++.+..++++.|++..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p--~~~~~l~~~k~~gv~~~ 82 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP--THDALLAYAKEFGVPLE 82 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCc--cchhhhhhHHhcCCCCC
Confidence 5779999999999999999999999999999999999999999988888899999999875 67788999999999865
Q ss_pred eeCC--CCcccccCCccceeeecCCCccccHHHHHHHHHHHHHHHHHHHHhhhcCC---------CCCCHHHHHHHHHhc
Q 039105 106 RTSG--DNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHT---------NDMSVLQAISIVLDR 174 (493)
Q Consensus 106 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~s~~~~~~~~~~~ 174 (493)
+... .....+......++ ..... ....+...+..+...+........ +..++..| .
T Consensus 83 ~fi~~g~~~~~~~~~~~~~p------~~~~~-~~~d~~~~~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W-~----- 149 (450)
T COG1231 83 PFIRDGDNVIGYVGSSKSTP------KRSLT-AAADVRGLVAELEAKARSAGELDPGLTPEDRELDLESLAAW-K----- 149 (450)
T ss_pred ceeccCcccccccccccccc------hhccc-hhhhhcchhhhhhhhhhcccccCcccCcchhhhhhHHHHhh-h-----
Confidence 4332 22222221111110 00000 000111111111111100000000 00111111 0
Q ss_pred ChhhhhhchHHHHHHHHHHHHHhhhc-CCccccccc-c------c---ccc--ccccCCccccccChHHHHHHHhh--cC
Q 039105 175 HPELRQEGLAYEVLQWYICRMEAWFA-VDADMISLK-C------W---DQE--QVLSGGHGLMVQGYDPVIKALSK--DI 239 (493)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~-~------~---~~~--~~~~~g~~~~~~G~~~l~~~L~~--gv 239 (493)
.....+++...-. ...++ .+..+.+.. . . ... .........+.+||+.+.+++++ |-
T Consensus 150 --~~~~~~~~~~~~a------~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa~ql~~ 221 (450)
T COG1231 150 --TSSLRGLSRDPGA------RVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQLGT 221 (450)
T ss_pred --hccccccccCccc------eeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHHHHHHHHHHHhhc
Confidence 0000001000000 00000 111111100 0 0 000 00111233455999999999987 44
Q ss_pred CccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCceeEEEEEcCCCC
Q 039105 240 DIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVF 319 (493)
Q Consensus 240 ~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~ 319 (493)
.|+++++|++|..++++|+|++.+..++++|+||+|+|+..+. .+.+.|.+++..+++.+.+.|...+|..+.|+++|
T Consensus 222 ~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~--qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpF 299 (450)
T COG1231 222 RILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILG--QIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPF 299 (450)
T ss_pred eEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHh--hcccCCCCCHHHHHHhcCcCcchheeeeeecCchh
Confidence 8999999999999999999999995589999999999999976 56888999999999999999999999999999999
Q ss_pred CCCCC-cceeecCCC-CceeeeeccccCCCCcEEEE-EecchhhHHhhcCCHHHHHHHHHHHHHHhCC-CCCCCcEE-EE
Q 039105 320 WPNVE-LLGVVAPTS-YACGYFLNLHKATGHPVLVY-MAAGRFAYDLEKLSDESAANFVMMQLKKMFP-DATEPVQY-LV 394 (493)
Q Consensus 320 ~~~~~-~~g~~~~~~-~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p-~~~~~~~~-~~ 394 (493)
|.+.+ +.|....+. ....++++....++..+|.. +..++....+..+++++.++.++..+.++|| ....+.+. ..
T Consensus 300 Wee~~~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~ 379 (450)
T COG1231 300 WEEAGILGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPFDYGAS 379 (450)
T ss_pred hhhcccCCceEeecCCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhhcccccccee
Confidence 99888 666544333 23344444333456666665 5667778889999999999999999999999 56677766 78
Q ss_pred cccCCCCCCCccccCCCCCCChhHHHHhhCccCceEEeeccccCcCcchhHHHHHHHHHHHHHHHHHHHh
Q 039105 395 SRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQKYLLK 464 (493)
Q Consensus 395 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGd~~~~~~~g~~egA~~sg~~aa~~i~~~l~~ 464 (493)
++|..++|+.|++....|++..+..+.+..|.++|++||....+.++||+|||+.||.+||.+|...+..
T Consensus 380 ~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~s 449 (450)
T COG1231 380 VDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALLSS 449 (450)
T ss_pred eecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999988888899999999999999999999995556667899999999999999999987653
No 11
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=1.5e-38 Score=322.38 Aligned_cols=402 Identities=22% Similarity=0.287 Sum_probs=277.0
Q ss_pred CCcEEEECcCHHHHHHHHHHHhC----CCcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhCCc
Q 039105 28 LPSVIVIGGGISGLAAARILYDA----SFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLT 103 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~----G~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (493)
++||+|||||+|||+||++|+++ |++|+|+|+++++||+++|...+|+.+|.|+|+++. .+..+.++++++|++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~--~~~~~~~l~~~lgl~ 79 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLE--RKKSAPDLVKDLGLE 79 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCcccccc--CChHHHHHHHHcCCC
Confidence 47999999999999999999999 999999999999999999998899999999999985 345699999999987
Q ss_pred eeeeC--CCCcccccCCccceeeecCCCccccHHHHHHHHHH----HHHHHHHHHHhh-hcCCCCCCHHHHHHHHHhcCh
Q 039105 104 LYRTS--GDNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEI----FKRILNETQKVR-DEHTNDMSVLQAISIVLDRHP 176 (493)
Q Consensus 104 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~ 176 (493)
..... ....+++..+ .....+|......+... ..++........ .....+.++.+|+..
T Consensus 80 ~~~~~~~~~~~~~~~~~--------g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~e~l~~------ 145 (462)
T TIGR00562 80 HVLVSDATGQRYVLVNR--------GKLMPVPTKIAPFVKTGLFSLGGKLRAGMDFIRPASPGKDESVEEFVRR------ 145 (462)
T ss_pred cccccCCCCceEEEECC--------CceecCCCChHHHhcCCCCCchhhHHhhhhhccCCCCCCCcCHHHHHHH------
Confidence 43321 1122222110 11111221111111000 011111111111 112346888888875
Q ss_pred hhhhhchHHHHHHHHHHHH-HhhhcCCcccccccccccc---------------------------ccc---cCC-cccc
Q 039105 177 ELRQEGLAYEVLQWYICRM-EAWFAVDADMISLKCWDQE---------------------------QVL---SGG-HGLM 224 (493)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~---------------------------~~~---~~g-~~~~ 224 (493)
.+.+++.+.++.|+ .+.++.+++++|+...... ..+ .+. ...+
T Consensus 146 -----~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (462)
T TIGR00562 146 -----RFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTL 220 (462)
T ss_pred -----hcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEec
Confidence 35566777777764 4577777777766532100 000 011 3558
Q ss_pred ccChHHHHHHHhhc---CCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHh
Q 039105 225 VQGYDPVIKALSKD---IDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIA 301 (493)
Q Consensus 225 ~~G~~~l~~~L~~g---v~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~ 301 (493)
.+|++.++++|++. .+|++|++|++|..+++++.|++++|++++||+||+|+|++.+..+ .+++++...+.+.
T Consensus 221 ~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~l----l~~~~~~~~~~l~ 296 (462)
T TIGR00562 221 ATGLETLPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAGL----LSELSNSASSHLD 296 (462)
T ss_pred chhHHHHHHHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHHH----hcccCHHHHHHHh
Confidence 89999999998764 4799999999999988889998888888999999999999987653 3557777788899
Q ss_pred hcCCCceeEEEEEcCCCCCCCC-CcceeecCCC---Cc-eeeeec----cccCCCCcEEEEEecchhhHHhhcCCHHHHH
Q 039105 302 DIGVGNENKIALRFDNVFWPNV-ELLGVVAPTS---YA-CGYFLN----LHKATGHPVLVYMAAGRFAYDLEKLSDESAA 372 (493)
Q Consensus 302 ~~~~~~~~~v~l~~~~~~~~~~-~~~g~~~~~~---~~-~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~ 372 (493)
.+.|.+..++.+.|+.++|... ...+++.+.. .. ...+++ ...|.+...+++++.+.....+.+.++++++
T Consensus 297 ~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~ 376 (462)
T TIGR00562 297 KIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEII 376 (462)
T ss_pred cCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHH
Confidence 9999999999999988777532 2344554432 11 112221 2234566678888877666678888999999
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCccccCCCCCCC---hhHHHHhhCccCceEEeeccccCcCcchhHHHHH
Q 039105 373 NFVMMQLKKMFPDATEPVQYLVSRWGTDPNTLGCYSYDVVGMP---GDLYERLRAPLGNLFFGGEAVSMEHQGSVHGAYS 449 (493)
Q Consensus 373 ~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~aGd~~~~~~~g~~egA~~ 449 (493)
+.++++|.++++...+|....+++|.. ..+.|. +++. ...++.+.++.+||++|||+.. ..++++|+.
T Consensus 377 ~~v~~~L~~~~gi~~~p~~~~v~rw~~---a~P~~~---~g~~~~~~~i~~~l~~~~~~l~l~G~~~~---g~~i~~~i~ 447 (462)
T TIGR00562 377 NIVLRDLKKVLNINNEPEMLCVTRWHR---AIPQYH---VGHDQRLKEARELLESAYPGVFLTGNSFE---GVGIPDCID 447 (462)
T ss_pred HHHHHHHHHHhCCCCCCcEEEEeEccc---cCCCCC---CChHHHHHHHHHHHHhhCCCEEEeccccC---CCcHHHHHH
Confidence 999999999997544577788999974 233232 3331 1222334455689999999953 249999999
Q ss_pred HHHHHHHHHHHHHH
Q 039105 450 AGVMAAQNCQKYLL 463 (493)
Q Consensus 450 sg~~aa~~i~~~l~ 463 (493)
||.++|+++++.+.
T Consensus 448 sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 448 QGKAAASDVLTFLF 461 (462)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988764
No 12
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=7.5e-38 Score=316.71 Aligned_cols=405 Identities=16% Similarity=0.202 Sum_probs=267.6
Q ss_pred CCcEEEECcCHHHHHHHHHHHhC------CCcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhC
Q 039105 28 LPSVIVIGGGISGLAAARILYDA------SFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLG 101 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~------G~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (493)
|++|+|||||+|||+||++|+++ |++|+|+||++++||+++|.+..|+.+|.|+|++++ .+..+.+++++||
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~--~~~~~~~l~~~lg 78 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVA--RNEHVMPLVKDLN 78 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhc--CCHHHHHHHHHcC
Confidence 46799999999999999999986 379999999999999999999899999999999874 4567899999999
Q ss_pred Cceeee--CCCCcccccCCccceeeecCCCccccHHHHHHHH-------HHHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q 039105 102 LTLYRT--SGDNSVLYDHDLESYALYDMDGNKVEKEMAIKVG-------EIFKRILNETQKVRDEHTNDMSVLQAISIVL 172 (493)
Q Consensus 102 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 172 (493)
++.... .....+++..+. ...+-......+|......+. ..+..+... ........++.|+.+|+.+
T Consensus 79 l~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sv~~~l~~-- 154 (463)
T PRK12416 79 LEEEMVYNETGISYIYSDNT-LHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDF-ITKNKEFTKDTSLALFLES-- 154 (463)
T ss_pred CccceecCCCCceEEEECCe-EEECCCCCeecCCCChHHhhcCCcCCHHHHHHhhhhh-ccCCCCCCCCCCHHHHHHH--
Confidence 974432 222233232211 000000000011111111111 011111111 1111112357889888775
Q ss_pred hcChhhhhhchHHHHHHHHHHHH-HhhhcCCcccccccccccc-------------------cc--cc--CCccccccCh
Q 039105 173 DRHPELRQEGLAYEVLQWYICRM-EAWFAVDADMISLKCWDQE-------------------QV--LS--GGHGLMVQGY 228 (493)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~-------------------~~--~~--~g~~~~~~G~ 228 (493)
.+.+++.+.++.++ .+.++.+++++|+...... .. .. ....++.+|+
T Consensus 155 ---------~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~ 225 (463)
T PRK12416 155 ---------FLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGL 225 (463)
T ss_pred ---------hcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCH
Confidence 35566777777764 4578888888876431100 00 01 1234789999
Q ss_pred HHHHHHHhhcC---CccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCC
Q 039105 229 DPVIKALSKDI---DIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGV 305 (493)
Q Consensus 229 ~~l~~~L~~gv---~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 305 (493)
+.++++|.+.+ +|++|++|++|+.+++++.|++.+|+++.||+||+|+|++.+..++ +.|++ .+.+..+.+
T Consensus 226 ~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~ll--~~~~l----~~~~~~~~~ 299 (463)
T PRK12416 226 STIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAETLL--QSNEL----NEQFHTFKN 299 (463)
T ss_pred HHHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHhhc--CCcch----hHHHhcCCC
Confidence 99999998754 6999999999999888899988888889999999999998876533 33444 334567778
Q ss_pred CceeEEEEEcCCCCCC-CCCcceeecCCCCc----eeeeecc---ccCCCCcEEEE-Eec--chhhHHhhcCCHHHHHHH
Q 039105 306 GNENKIALRFDNVFWP-NVELLGVVAPTSYA----CGYFLNL---HKATGHPVLVY-MAA--GRFAYDLEKLSDESAANF 374 (493)
Q Consensus 306 ~~~~~v~l~~~~~~~~-~~~~~g~~~~~~~~----~~~~~~~---~~~~~~~~l~~-~~~--~~~~~~~~~~~~~e~~~~ 374 (493)
.+..++++.|+.+.|. +....|++.++... ...+.+. ..+++..+++. +.. +...+.+.+++++++.+.
T Consensus 300 ~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~ 379 (463)
T PRK12416 300 SSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRV 379 (463)
T ss_pred CceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHH
Confidence 8888999999976553 22345666554321 1112211 11223334443 432 345667888999999999
Q ss_pred HHHHHHHhCCCCCCCcEEEEcccCCCCCCCccccCCCCCCC---hhHHHHhhCccCceEEeeccccCcCcchhHHHHHHH
Q 039105 375 VMMQLKKMFPDATEPVQYLVSRWGTDPNTLGCYSYDVVGMP---GDLYERLRAPLGNLFFGGEAVSMEHQGSVHGAYSAG 451 (493)
Q Consensus 375 ~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~aGd~~~~~~~g~~egA~~sg 451 (493)
++++|+++++...+|+...+++|.. ..+.|. +++. ....+.+..+.+||++||+++.. .++++|+.||
T Consensus 380 ~~~~L~~~lG~~~~p~~~~v~~W~~---a~P~y~---~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g---~~i~~ai~sg 450 (463)
T PRK12416 380 ALYDIEKSLGIKGEPEVVEVTNWKD---LMPKYH---LEHNQAVQSLQEKMMNLYPNIYLAGASYYG---VGIGACIGNG 450 (463)
T ss_pred HHHHHHHHhCCCCCceEEEEEEccc---cCCCcC---cCHHHHHHHHHHHHHhhCCCeEEecccccc---ccHHHHHHHH
Confidence 9999999998666788888999975 222221 2221 12233455567899999999643 4799999999
Q ss_pred HHHHHHHHHHH
Q 039105 452 VMAAQNCQKYL 462 (493)
Q Consensus 452 ~~aa~~i~~~l 462 (493)
+++|++|++.+
T Consensus 451 ~~aA~~i~~~~ 461 (463)
T PRK12416 451 KNTANEIIATL 461 (463)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 13
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=3e-37 Score=311.06 Aligned_cols=403 Identities=21% Similarity=0.227 Sum_probs=257.8
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhCCcee--ee
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLY--RT 107 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~--~~ 107 (493)
+|+|||||++||+||+.|+++|++|+|+|+++++||+++++..+|+.+|.|.|++.. .+.++.++++++|++.. ..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~--~~~~~~~l~~~lg~~~~~~~~ 78 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFK--SDEALLELLDELGLEDKLRWR 78 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhcc--ccHHHHHHHHHcCCCCceeec
Confidence 589999999999999999999999999999999999999999999999999999874 56789999999998632 22
Q ss_pred CCCCcccccCCccceeeecCCCc--cc-cHHHHHHHHHHHHHHHHHHHH-hhhcCCCCCCHHHHHHHHHhcChhhhhhch
Q 039105 108 SGDNSVLYDHDLESYALYDMDGN--KV-EKEMAIKVGEIFKRILNETQK-VRDEHTNDMSVLQAISIVLDRHPELRQEGL 183 (493)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 183 (493)
.....+.+.+. .+. +..... .+ .......+..... ...... ......++.++.+|+.+. +
T Consensus 79 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~l~~~-----------~ 142 (434)
T PRK07233 79 ETKTGYYVDGK--LYP-LGTPLELLRFPHLSLIDKFRLGLL--TLLARRIKDWRALDKVPAEEWLRRW-----------S 142 (434)
T ss_pred cCceEEEECCe--Eec-CCCHHHHHcCCCCCHHHHHHhHHH--HHhhhhcccccccccccHHHHHHHh-----------c
Confidence 21222222211 000 000000 00 0001111111110 000111 011233557788887653 3
Q ss_pred HHHHHHHHHHH-HHhhhcCCccccccccccccc---c------ccCCccccccChHHHHHHHhh-----cCCccccceeE
Q 039105 184 AYEVLQWYICR-MEAWFAVDADMISLKCWDQEQ---V------LSGGHGLMVQGYDPVIKALSK-----DIDIRLNQRVT 248 (493)
Q Consensus 184 ~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~---~------~~~g~~~~~~G~~~l~~~L~~-----gv~i~~~~~V~ 248 (493)
.++..+.++.+ +...++.+++++|+..+.... . ......++.+|++.++++|.+ |++|++|++|+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~ 222 (434)
T PRK07233 143 GEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVT 222 (434)
T ss_pred CHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCee
Confidence 34555556665 355778888888876543111 0 012356889999999998864 77999999999
Q ss_pred EEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCceeEEEEEcCCCCCCCCCccee
Q 039105 249 KISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLGV 328 (493)
Q Consensus 249 ~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~g~ 328 (493)
+|+.+++++.+.+.++++++||+||+|+|+..+..++ +++++...+.+..+.+.+..++.+.++.+.+. ..+...
T Consensus 223 ~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 297 (434)
T PRK07233 223 SVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILARLV----PDLPADVLARLRRIDYQGVVCMVLKLRRPLTD-YYWLNI 297 (434)
T ss_pred EEEEcCCceEEEEeCCceEECCEEEECCCHHHHHhhc----CCCcHHHHhhhcccCccceEEEEEEecCCCCC-Cceeee
Confidence 9998888776555677789999999999998876532 45666666777788888888889999887532 111000
Q ss_pred ecCCC-Cc-eeee---eccccCCCCcEE--EEEecchhhHHhhcCCHHHHHHHHHHHHHHhCCCCCC--CcEEEEcccCC
Q 039105 329 VAPTS-YA-CGYF---LNLHKATGHPVL--VYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDATE--PVQYLVSRWGT 399 (493)
Q Consensus 329 ~~~~~-~~-~~~~---~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~--~~~~~~~~w~~ 399 (493)
..+.. .. .... .....++++.++ .+++.... .+...+++++++.++++|++++|++.. ++...+.+|
T Consensus 298 ~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~-- 373 (434)
T PRK07233 298 NDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDH--PLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRA-- 373 (434)
T ss_pred cCCCCCcceEEEecccCCccccCCceEEEEeeecCCCC--hhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEe--
Confidence 01101 11 1111 111122344443 33333322 355778899999999999999997532 333334444
Q ss_pred CCCCCccccCCCCCCChhHHHHhhCccCceEEeeccccCcCcchhHHHHHHHHHHHHHHHHHHHh
Q 039105 400 DPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQKYLLK 464 (493)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGd~~~~~~~g~~egA~~sg~~aa~~i~~~l~~ 464 (493)
++..+.+ .|+ ....++.+.++++|||+|||+....+.+++++|+.||.+||++|+..++.
T Consensus 374 -~~a~~~~---~~g-~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~~ 433 (434)
T PRK07233 374 -PYAQPIY---EPG-YLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRRN 433 (434)
T ss_pred -ccccccc---cCc-hhhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhcC
Confidence 3343333 233 22444556778899999999543334459999999999999999987763
No 14
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=9.5e-37 Score=308.82 Aligned_cols=401 Identities=22% Similarity=0.285 Sum_probs=260.2
Q ss_pred CcEEEECcCHHHHHHHHHHHhCC--CcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhCCceee
Q 039105 29 PSVIVIGGGISGLAAARILYDAS--FKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYR 106 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G--~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~ 106 (493)
++|+|||||+|||+||+.|+++| ++|+|+||++++||+++|...+|+.+|.|+|++++ .+.++.++++++|++...
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lgl~~~~ 78 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLA--RKPSAPALVKELGLEDEL 78 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcC--CcHHHHHHHHHcCCccce
Confidence 47999999999999999999988 89999999999999999999999999999998874 455699999999987432
Q ss_pred eC--CCCcccccCCccceeeecCC-CccccHHHHHHH----HHHHHHHHHHH--HHhhhcCCCCCCHHHHHHHHHhcChh
Q 039105 107 TS--GDNSVLYDHDLESYALYDMD-GNKVEKEMAIKV----GEIFKRILNET--QKVRDEHTNDMSVLQAISIVLDRHPE 177 (493)
Q Consensus 107 ~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~ 177 (493)
.. ....+++.++. .+. +... ...++......+ .....++.... ........++.++.+|+.+
T Consensus 79 ~~~~~~~~~~~~~g~-~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~------- 149 (451)
T PRK11883 79 VANTTGQSYIYVNGK-LHP-IPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADLRPPRWKPGQDQSVGAFFRR------- 149 (451)
T ss_pred ecCCCCcceEEECCe-EEE-CCCCCeeccCCCchhhhcCCCCCHHHHHHhhCcccCCCCCCCCCcCHHHHHHH-------
Confidence 21 12222222221 110 1000 001111111100 00000110000 0001122456788888764
Q ss_pred hhhhchHHHHHHHHHHHH-HhhhcCCcccccccccccc-----------------cc-----c-cCCccccccChHHHHH
Q 039105 178 LRQEGLAYEVLQWYICRM-EAWFAVDADMISLKCWDQE-----------------QV-----L-SGGHGLMVQGYDPVIK 233 (493)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~-----------------~~-----~-~~g~~~~~~G~~~l~~ 233 (493)
.+++++.+.++.++ .+.++.+++.+|+...... .. . ......+.+|++.+++
T Consensus 150 ----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~ 225 (451)
T PRK11883 150 ----RFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIE 225 (451)
T ss_pred ----hccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHH
Confidence 35566777777774 4577777777775432100 00 0 1123468999999999
Q ss_pred HHhhcC---CccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCceeE
Q 039105 234 ALSKDI---DIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENK 310 (493)
Q Consensus 234 ~L~~gv---~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 310 (493)
+|.+.+ +|++|++|++|+.+++++.|.+.+|++++||+||+|+|++.+.++.. . +...+.+..+.+.+..+
T Consensus 226 ~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~--~----~~~~~~~~~~~~~~~~~ 299 (451)
T PRK11883 226 ALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSLFV--A----PPAFALFKTIPSTSVAT 299 (451)
T ss_pred HHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHhcc--C----hhHHHHHhCCCCCceEE
Confidence 998755 59999999999998888888888998999999999999999876421 1 23356778889999999
Q ss_pred EEEEcCCCCCCCCCcceeecCC--CCc--eeeeec----cccCCCCcEEEEEecchhhHHhhcCCHHHHHHHHHHHHHHh
Q 039105 311 IALRFDNVFWPNVELLGVVAPT--SYA--CGYFLN----LHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKM 382 (493)
Q Consensus 311 v~l~~~~~~~~~~~~~g~~~~~--~~~--~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~ 382 (493)
+++.|+.+++......+++... ... ...+.+ ...|.+..+++.+.+..........+++++++.++++|+++
T Consensus 300 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 379 (451)
T PRK11883 300 VALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKV 379 (451)
T ss_pred EEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHH
Confidence 9999998753222333443321 111 111222 12234444444444332233456778999999999999999
Q ss_pred CCCCCCCcEEEEcccCCCCCCCccccCCCCCCCh---hHHHHhhCccCceEEeeccccCcCcchhHHHHHHHHHHHHHHH
Q 039105 383 FPDATEPVQYLVSRWGTDPNTLGCYSYDVVGMPG---DLYERLRAPLGNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQ 459 (493)
Q Consensus 383 ~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~aGd~~~~~~~g~~egA~~sg~~aa~~i~ 459 (493)
++...++....+.+|... ++.+ .++... ..++.+.. ++|||+||+++. ++++++|+.||+++|++|+
T Consensus 380 ~g~~~~~~~~~~~rw~~a---~p~~---~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~---g~~i~~av~sg~~~a~~i~ 449 (451)
T PRK11883 380 MGITGDPEFTIVQRWKEA---MPQY---GVGHIERVAELRAGLPH-YPGLYVAGASFE---GVGLPDCIAQAKRAAARLL 449 (451)
T ss_pred hCCCCCceEEEEeecCcc---CCCC---CccHHHHHHHHHHhhhh-CCCEEEECcccC---CccHHHHHHHHHHHHHHHH
Confidence 975556777788899752 2222 233311 11223333 679999999964 3589999999999999987
Q ss_pred H
Q 039105 460 K 460 (493)
Q Consensus 460 ~ 460 (493)
+
T Consensus 450 ~ 450 (451)
T PRK11883 450 A 450 (451)
T ss_pred h
Confidence 5
No 15
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=1.1e-36 Score=311.05 Aligned_cols=402 Identities=21% Similarity=0.226 Sum_probs=265.5
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhC-CCcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhCCc
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDA-SFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLT 103 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~-G~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (493)
..+++||+|||||+|||+||++|+++ |++|+|+||++++||+++|...+|+.+|.|+|++.. .+..+..++++ |++
T Consensus 9 ~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~--~~~~~~~l~~~-gl~ 85 (496)
T PLN02576 9 AASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQP--SDPELTSAVDS-GLR 85 (496)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhcc--CcHHHHHHHHc-CCh
Confidence 35678999999999999999999999 999999999999999999999999999999999873 34456666666 776
Q ss_pred eeee--C-CCCcccccCCccceeeecCCCccccHHHHHHHH----HHHHHHHH--HHHHh--hhcCCCCCCHHHHHHHHH
Q 039105 104 LYRT--S-GDNSVLYDHDLESYALYDMDGNKVEKEMAIKVG----EIFKRILN--ETQKV--RDEHTNDMSVLQAISIVL 172 (493)
Q Consensus 104 ~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~--~~~~~~~~s~~~~~~~~~ 172 (493)
.... . ....+++.++ ....+|.+....+. ....++.. ..... .....++.++.+|+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~g---------~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~-- 154 (496)
T PLN02576 86 DDLVFPDPQAPRYVVWNG---------KLRPLPSNPIDLPTFDLLSAPGKIRAGLGAFGWKRPPPPGREESVGEFVRR-- 154 (496)
T ss_pred hheecCCCCceEEEEECC---------EEEEcCCChHHhcCcCcCChhHHHHHhHHHhhccCCCCCCCCCcHHHHHHH--
Confidence 3221 1 1111111111 11111111111100 00111110 01111 0122467889998875
Q ss_pred hcChhhhhhchHHHHHHHHHHHH-HhhhcCCcccccccccccc-----------------cc------------------
Q 039105 173 DRHPELRQEGLAYEVLQWYICRM-EAWFAVDADMISLKCWDQE-----------------QV------------------ 216 (493)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~-----------------~~------------------ 216 (493)
.+++++.+.++.|+ .+.++.+++++|+...... ..
T Consensus 155 ---------~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~ 225 (496)
T PLN02576 155 ---------HLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPK 225 (496)
T ss_pred ---------hcCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhccccccccccccccc
Confidence 46777888888874 5678888888877642110 00
Q ss_pred -ccCCccccccChHHHHHHHhhcC---CccccceeEEEEecCCc-EEEEE--cCCc-EEEcCEEEEecChhhhhcCcccc
Q 039105 217 -LSGGHGLMVQGYDPVIKALSKDI---DIRLNQRVTKISNGCNK-VMVTV--EDGR-NFVADAAIVTVPLGILKANLIQF 288 (493)
Q Consensus 217 -~~~g~~~~~~G~~~l~~~L~~gv---~i~~~~~V~~I~~~~~~-v~V~~--~~G~-~~~ad~VI~a~~~~~l~~~~~~~ 288 (493)
.......+.+|++.|+++|++.+ +|++|++|++|+..+++ +.|+. .+|+ +++||+||+|+|+..+..++.
T Consensus 226 ~~~~~~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~-- 303 (496)
T PLN02576 226 PKGQTVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLR-- 303 (496)
T ss_pred ccCCeeEeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhc--
Confidence 00113567899999999998754 59999999999988776 65544 3553 699999999999999876432
Q ss_pred cCCCcHHHHHHHhhcCCCceeEEEEEcCCCCCCCC-------CcceeecCCCC---ce-eeeecc----ccCCCCcEEEE
Q 039105 289 EPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNV-------ELLGVVAPTSY---AC-GYFLNL----HKATGHPVLVY 353 (493)
Q Consensus 289 ~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-------~~~g~~~~~~~---~~-~~~~~~----~~~~~~~~l~~ 353 (493)
++++...+.+..+.|.+..++.+.|++++|... ...+...++.. .. ..+.+. ..+++...++.
T Consensus 304 --~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~ 381 (496)
T PLN02576 304 --PKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLN 381 (496)
T ss_pred --ccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEE
Confidence 345556788889999999999999998887642 12233332211 01 111111 12445567777
Q ss_pred EecchhhHHhhcCCHHHHHHHHHHHHHHhCCCCC--CCcEEEEcccCCCCCCCccccCCCCCCChhHHHHhh---Ccc--
Q 039105 354 MAAGRFAYDLEKLSDESAANFVMMQLKKMFPDAT--EPVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLR---APL-- 426 (493)
Q Consensus 354 ~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~--~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-- 426 (493)
++.+.....+.+++++++++.+.++|.++++... .|....+++|.. ..+.|. +++. ...+.+. .+.
T Consensus 382 ~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~---a~P~~~---~g~~-~~~~~~~~~l~~~~~ 454 (496)
T PLN02576 382 YIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPK---AIPQYL---LGHL-DVLEAAEKMEKDLGL 454 (496)
T ss_pred EECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCc---ccCCCC---cCHH-HHHHHHHHHHHhcCC
Confidence 8877666778889999999999999999997432 556666788974 222221 2221 1122222 222
Q ss_pred CceEEeeccccCcCcchhHHHHHHHHHHHHHHHHHHH
Q 039105 427 GNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQKYLL 463 (493)
Q Consensus 427 ~~l~~aGd~~~~~~~g~~egA~~sg~~aa~~i~~~l~ 463 (493)
+|||+|||++.. .++++|+.||.++|++|++.+.
T Consensus 455 ~~l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 455 PGLFLGGNYRGG---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred CCEEEeccccCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence 799999999753 5899999999999999998754
No 16
>PLN02612 phytoene desaturase
Probab=100.00 E-value=1.3e-35 Score=303.54 Aligned_cols=415 Identities=20% Similarity=0.225 Sum_probs=256.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccC-CCCceeecccceeeCCCCCCchHHHHHHhCCce
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDY-SFGCPVDMGASWLHGVCNENPLAPLIRRLGLTL 104 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (493)
.+.++|+|||||++||+||++|+++|++|+|+|+++++||+++++. .+|+.+|.|.|++.+. +.++.++++++|+..
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~--~~~~~~ll~elG~~~ 168 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA--YPNVQNLFGELGIND 168 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCC--CchHHHHHHHhCCcc
Confidence 3568899999999999999999999999999999999999999876 4789999999999853 567999999999964
Q ss_pred eee--CCCCcccccCCccceeeecCCCccccHHH--HHHHHH------HHHHHHHH--HHH--h----hhcCCCCCCHHH
Q 039105 105 YRT--SGDNSVLYDHDLESYALYDMDGNKVEKEM--AIKVGE------IFKRILNE--TQK--V----RDEHTNDMSVLQ 166 (493)
Q Consensus 105 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~--~~~--~----~~~~~~~~s~~~ 166 (493)
... .....+.+......+..+.. ....|... ...+.. ..+++... ... . .....++.++.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv~e 247 (567)
T PLN02612 169 RLQWKEHSMIFAMPNKPGEFSRFDF-PEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKE 247 (567)
T ss_pred cceecccceEEEecCCCCceeeCcC-chhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcccchhhhhcCcCcHHH
Confidence 322 11111111111111111000 00011110 111100 00111100 000 0 011345678888
Q ss_pred HHHHHHhcChhhhhhchHHHHHHHHHHHH-HhhhcCCcccccccccccc--ccccCC----ccccccC-----hHHHHHH
Q 039105 167 AISIVLDRHPELRQEGLAYEVLQWYICRM-EAWFAVDADMISLKCWDQE--QVLSGG----HGLMVQG-----YDPVIKA 234 (493)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~--~~~~~g----~~~~~~G-----~~~l~~~ 234 (493)
|+++. ++++.+.+.++.++ ...++.+++++|+..+... ..+... ..++.++ ..++++.
T Consensus 248 ~l~~~----------~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~ 317 (567)
T PLN02612 248 WMRKQ----------GVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDH 317 (567)
T ss_pred HHHhc----------CCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHH
Confidence 87753 45566666665554 3555667778777655421 111111 1123333 2455555
Q ss_pred Hh-hcCCccccceeEEEEecCCc--EEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCceeEE
Q 039105 235 LS-KDIDIRLNQRVTKISNGCNK--VMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKI 311 (493)
Q Consensus 235 L~-~gv~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v 311 (493)
|. .|++|++|++|++|+.++++ +.|++.+|++++||+||+|+|+..++.++....+ +....+.+..+.+.+..++
T Consensus 318 l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~--~~~~~~~l~~l~~~~v~~v 395 (567)
T PLN02612 318 FQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWK--EIPYFKKLDKLVGVPVINV 395 (567)
T ss_pred HHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhc--CcHHHHHHHhcCCCCeEEE
Confidence 53 38899999999999986544 3577788989999999999999888754322111 1223444556777788899
Q ss_pred EEEcCCCCCCCCCcceeecCCC-Cceeee------eccccCCCCcEEEEEecchhhHHhhcCCHHHHHHHHHHHHHHhCC
Q 039105 312 ALRFDNVFWPNVELLGVVAPTS-YACGYF------LNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFP 384 (493)
Q Consensus 312 ~l~~~~~~~~~~~~~g~~~~~~-~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p 384 (493)
++.|++++|.... ..+.... ....+. +.+. ++++.++.+... ...+|..++++++++.++++|+++||
T Consensus 396 ~l~~dr~~~~~~~--~~~~~~~~~~~~~~d~S~~~~~~~-~~~~~ll~~~~~--~a~~~~~~sdeei~e~vl~~L~~lfp 470 (567)
T PLN02612 396 HIWFDRKLKNTYD--HLLFSRSPLLSVYADMSTTCKEYY-DPNKSMLELVFA--PAEEWISRSDEDIIDATMKELAKLFP 470 (567)
T ss_pred EEEECcccCCCCC--ceeecCCCCceeehhhhhcchhhc-CCCCeEEEEEEE--cChhhhcCCHHHHHHHHHHHHHHHCC
Confidence 9999999875322 1221111 111111 1111 233444443332 35678889999999999999999999
Q ss_pred CCCCC----cEEEEcccCCCCCCCccccCCCCCCChhHHHHhhCccCceEEeeccccCcCcchhHHHHHHHHHHHHHHHH
Q 039105 385 DATEP----VQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQK 460 (493)
Q Consensus 385 ~~~~~----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGd~~~~~~~g~~egA~~sg~~aa~~i~~ 460 (493)
+...+ .....+.+...|.. .|.. .|+.. ..++.+.+|++|||+|||++...|++++|||+.||++||+.|++
T Consensus 471 ~~~~~~~~~~~i~~~~~v~~P~a--~~~~-~pg~~-~~rp~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~ 546 (567)
T PLN02612 471 DEISADQSKAKILKYHVVKTPRS--VYKT-VPNCE-PCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQ 546 (567)
T ss_pred cccccccCCceEEEEEEeccCCc--eEEe-CCCCc-ccCccccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHH
Confidence 75322 11222222223332 1221 23322 34566788999999999999988889999999999999999998
Q ss_pred HHHh
Q 039105 461 YLLK 464 (493)
Q Consensus 461 ~l~~ 464 (493)
.+..
T Consensus 547 ~~~~ 550 (567)
T PLN02612 547 DYEL 550 (567)
T ss_pred Hhcc
Confidence 8643
No 17
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=3.2e-36 Score=291.05 Aligned_cols=403 Identities=24% Similarity=0.239 Sum_probs=278.9
Q ss_pred CcEEEECcCHHHHHHHHHHHhCC--CcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhCCceee
Q 039105 29 PSVIVIGGGISGLAAARILYDAS--FKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYR 106 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G--~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~ 106 (493)
..|+|||||+|||+|||+|+|++ .+|+|||+.+++||.++|+..+|+.+|.|+|.|... ...+.+++++||++...
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~--~~~~l~li~eLGled~l 78 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR--KEEILDLIKELGLEDKL 78 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecc--hHHHHHHHHHhCcHHhh
Confidence 36999999999999999999999 999999999999999999999999999999988743 47789999999998433
Q ss_pred e--CCCCc-ccccCCccceeeecCCCccccHHHHHHHHHHHHHHHHH-HHHhhhcCCCCCCHHHHHHHHHhcChhhhhhc
Q 039105 107 T--SGDNS-VLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNE-TQKVRDEHTNDMSVLQAISIVLDRHPELRQEG 182 (493)
Q Consensus 107 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 182 (493)
. ..... +++++....++.-. -..+|....... ....+++.. ..+.......+.++++|+++ .
T Consensus 79 ~~~~~~~~~i~~~gkl~p~P~~~--i~~ip~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~sv~~f~r~-----------~ 144 (444)
T COG1232 79 LWNSTARKYIYYDGKLHPIPTPT--ILGIPLLLLSSE-AGLARALQEFIRPKSWEPKQDISVGEFIRR-----------R 144 (444)
T ss_pred ccCCcccceEeeCCcEEECCccc--eeecCCccccch-hHHHHHHHhhhcccCCCCCCCcCHHHHHHH-----------H
Confidence 2 22333 22332211111100 111111111000 011112111 12222356678999999885 5
Q ss_pred hHHHHHHHHHHH-HHhhhcCCcccccccccc-c-------cccc---------------cCCccccccChHHHHHHHhhc
Q 039105 183 LAYEVLQWYICR-MEAWFAVDADMISLKCWD-Q-------EQVL---------------SGGHGLMVQGYDPVIKALSKD 238 (493)
Q Consensus 183 ~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~-~-------~~~~---------------~~g~~~~~~G~~~l~~~L~~g 238 (493)
|++++++.++.| +.+.|+.+++++|+.... . .... .+-.+++.+|++.++++|.+.
T Consensus 145 fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~ 224 (444)
T COG1232 145 FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEK 224 (444)
T ss_pred HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHH
Confidence 889999999888 578999999999988322 1 0111 112567889999999999885
Q ss_pred C--CccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCceeEEEEEcC
Q 039105 239 I--DIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFD 316 (493)
Q Consensus 239 v--~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~ 316 (493)
+ +|+++++|++|.+++.++.+.+.+|.+++||.||+|+|++.+.+++-. ....+....+.+.....|.+.++
T Consensus 225 l~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~------~~~~~~~~~~~~~s~~~vv~~~~ 298 (444)
T COG1232 225 LEAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGD------EAVSKAAKELQYTSVVTVVVGLD 298 (444)
T ss_pred hhhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCC------cchhhhhhhccccceEEEEEEec
Confidence 4 688999999999998888888889989999999999999998764322 22356777888878888888887
Q ss_pred CC-CCCCCCcceeecCCCC----ceeee---eccccCCCCcEEEEEecchhhHHhhcCCHHHHHHHHHHHHHHhCCCCCC
Q 039105 317 NV-FWPNVELLGVVAPTSY----ACGYF---LNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDATE 388 (493)
Q Consensus 317 ~~-~~~~~~~~g~~~~~~~----~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~~ 388 (493)
++ ........|+..++.. .+.+. ++...|.++..+.+.+.....+....++++|+++.++++|.++++...+
T Consensus 299 ~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~~ 378 (444)
T COG1232 299 EKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGINGD 378 (444)
T ss_pred cccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcCcc
Confidence 64 1112223344433321 12222 2233456777888777776666677788999999999999999998888
Q ss_pred CcEEEEcccCCCCCCCccccCCCCCCChhHHHHhhCccCceEEeeccccCcCcchhHHHHHHHHHHHHHHH
Q 039105 389 PVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQ 459 (493)
Q Consensus 389 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGd~~~~~~~g~~egA~~sg~~aa~~i~ 459 (493)
|....+.+|.. ..+.|...........+..+.+..+|+.++|.+... -++..|+.+|..||++++
T Consensus 379 ~~~~~v~r~~~---~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g---~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 379 PVFVEVTRWKY---AMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG---VGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred hhheeeeeccc---cCCccchhHHHHHHHHHHhhccccCCeEEeccCCCC---CCchHHHHHHHHHHHHhh
Confidence 88777888864 344443211111223444444444899999998532 389999999999999875
No 18
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=1.8e-35 Score=298.54 Aligned_cols=406 Identities=20% Similarity=0.276 Sum_probs=256.8
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccC-CCCceeecccceeeCCCCCCchHHHHHHhCCceeeeC
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDY-SFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTS 108 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 108 (493)
+|+|||||++||+||++|+++|++|+|+|+++++||+++|.. .+|+.+|.|.|++.+ .+.++.++++++|+......
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lg~~~~~~~ 78 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFG--AYPNMLQLLKELNIEDRLQW 78 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceecc--CCchHHHHHHHcCCccceee
Confidence 589999999999999999999999999999999999999864 578999999999884 45679999999998643221
Q ss_pred CCCccccc--CCccceeeecCCCccccHHHHHHHH---------HHHHHHHHHHHHhh-----hcCCCCCCHHHHHHHHH
Q 039105 109 GDNSVLYD--HDLESYALYDMDGNKVEKEMAIKVG---------EIFKRILNETQKVR-----DEHTNDMSVLQAISIVL 172 (493)
Q Consensus 109 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~~~~ 172 (493)
......+. ........+.......+......+. +.+........... ....++.++.+|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~-- 156 (453)
T TIGR02731 79 KSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRK-- 156 (453)
T ss_pred cCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHH--
Confidence 11111111 1000111111010001111110000 00000000000000 112356788888764
Q ss_pred hcChhhhhhchHHHHHHHHHHHH-HhhhcCCcccccccccccccc--cc--CCc--ccccc-----ChHHHHHHHhh-cC
Q 039105 173 DRHPELRQEGLAYEVLQWYICRM-EAWFAVDADMISLKCWDQEQV--LS--GGH--GLMVQ-----GYDPVIKALSK-DI 239 (493)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~--~~--~g~--~~~~~-----G~~~l~~~L~~-gv 239 (493)
.++++.+.+.++.|+ .+.++.+++++|+..+..... +. .+. .+..+ ..+.+.+.+.+ |+
T Consensus 157 --------~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~ 228 (453)
T TIGR02731 157 --------QGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGG 228 (453)
T ss_pred --------cCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcCC
Confidence 356667777776664 356677888888766541111 11 111 11222 24555555543 88
Q ss_pred CccccceeEEEEecC-CcE-EEEEcCCc-----EEEcCEEEEecChhhhhcCcccccCCCc-HHHHHHHhhcCCCceeEE
Q 039105 240 DIRLNQRVTKISNGC-NKV-MVTVEDGR-----NFVADAAIVTVPLGILKANLIQFEPKLP-EWKLSAIADIGVGNENKI 311 (493)
Q Consensus 240 ~i~~~~~V~~I~~~~-~~v-~V~~~~G~-----~~~ad~VI~a~~~~~l~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~v 311 (493)
+|++|++|++|+.++ +++ .|++.+|+ ++.+|.||+|+|++.+..++ . +..+ ....+.+..+.+.+..++
T Consensus 229 ~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL-~--~~~~~~~~~~~~~~~~~~~~~~v 305 (453)
T TIGR02731 229 EVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLL-P--QPWKQMPFFQKLNGLEGVPVINV 305 (453)
T ss_pred EEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhC-c--hhhhcCHHHHHhhcCCCCcEEEE
Confidence 999999999998644 434 46666665 78999999999998876542 1 1111 233455666778788899
Q ss_pred EEEcCCCCCCCCCcceeecCCCCceeee------eccccCCCCcEEEEEecchhhHHhhcCCHHHHHHHHHHHHHHhCCC
Q 039105 312 ALRFDNVFWPNVELLGVVAPTSYACGYF------LNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPD 385 (493)
Q Consensus 312 ~l~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~ 385 (493)
.+.|+++++....+ .+.......... .... ++++.++.+++.. ...+..++++|+++.++++|++++|+
T Consensus 306 ~l~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~-~~~~~l~~~~~~~--~~~~~~~~~ee~~~~v~~~L~~~~~~ 380 (453)
T TIGR02731 306 HIWFDRKLTTVDHL--LFSRSPLLSVYADMSETCKEYA-DPDKSMLELVFAP--AADWIGRSDEEIIDATMAELAKLFPN 380 (453)
T ss_pred EEEEccccCCCCce--eeeCCCcceeecchhhhChhhc-CCCCeEEEEEecC--hhhhhcCCHHHHHHHHHHHHHHhCCc
Confidence 99999988754321 111111111100 0111 2234444443332 35678889999999999999999985
Q ss_pred C---CCCcEEEEcccCCCCCCCccccCCCCCCChhHHHHhhCccCceEEeeccccCcCcchhHHHHHHHHHHHHHHH
Q 039105 386 A---TEPVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQ 459 (493)
Q Consensus 386 ~---~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGd~~~~~~~g~~egA~~sg~~aa~~i~ 459 (493)
. .++.+...++|..+++.. |. ..|+. ....+.+.+|++|||+||++++..++|+||||+.||.+||++|+
T Consensus 381 ~~~~~~~~~~~~~~~~~~p~a~--~~-~~pg~-~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 381 HIKADSPAKILKYKVVKTPRSV--YK-TTPGR-QQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred ccCCCCCceEEEEEEEECCCce--ec-cCCCC-hhhCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 2 246666677888888873 32 33563 46778889999999999999998888999999999999999873
No 19
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=100.00 E-value=3.2e-36 Score=304.43 Aligned_cols=406 Identities=28% Similarity=0.366 Sum_probs=256.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCC--CceeecccceeeCCCCCCchHHHHHHhCCc--eeeeCCCCcc
Q 039105 38 ISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSF--GCPVDMGASWLHGVCNENPLAPLIRRLGLT--LYRTSGDNSV 113 (493)
Q Consensus 38 iaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~--g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~--~~~~~~~~~~ 113 (493)
+|||+||++|+++|++|+||||++++||+++|.+.+ |+.+|.|+++++. .+..+..++++++++ ..........
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~ 78 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFG--MYPNLLNLIDELGLELSLETFPFPQIP 78 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEET--TSHHHHHHHHHHTHHTTEEEEEESSEE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccc--cchhhHHHHHHhhhcccccccccccce
Confidence 699999999999999999999999999999999888 9999999999984 344589999999874 2222111111
Q ss_pred c-ccCCccceeeecCCCccccHHH--------HHHHHHHHH---HHHHHHHHhhhcC------CCCCCHHHHHHHHHhcC
Q 039105 114 L-YDHDLESYALYDMDGNKVEKEM--------AIKVGEIFK---RILNETQKVRDEH------TNDMSVLQAISIVLDRH 175 (493)
Q Consensus 114 ~-~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~---~~~~~~~~~~~~~------~~~~s~~~~~~~~~~~~ 175 (493)
. +.......... .....+... .......+. ............. ....++.+++.
T Consensus 79 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 150 (450)
T PF01593_consen 79 FVYWPFGDGRPPW--PPSQLPRNLNEFAALISLARFFRLLERLNKLRQMLDPFFNKAEPEFLEDDLESFLEFLD------ 150 (450)
T ss_dssp EEEEEEEEEEEEE--EECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred eeecccccccccc--ccccccccccchhhhhhccccccccccccchhccchhhhhhhhhhhhhhhhhhhhhhhh------
Confidence 1 11000000000 000011000 000000000 0000000000000 00001111110
Q ss_pred hhhhhhchHHHHHHHHHHH-HHhhhcCCccccccc-------cccc---cccccCCc-cccccChHHHHHHHhh--cCCc
Q 039105 176 PELRQEGLAYEVLQWYICR-MEAWFAVDADMISLK-------CWDQ---EQVLSGGH-GLMVQGYDPVIKALSK--DIDI 241 (493)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~-------~~~~---~~~~~~g~-~~~~~G~~~l~~~L~~--gv~i 241 (493)
...+.+......... ............+.. .+.. ......+. ....+++..+...+.+ |.+|
T Consensus 151 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~i 226 (450)
T PF01593_consen 151 ----SQSFSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLSLALALAAEELGGEI 226 (450)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTHHHHHHHHHHHGGGE
T ss_pred ----hhhhhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccchhHHHHHHHhhcCcee
Confidence 111111111100011 011111111111111 0100 00111222 2234445555554443 6799
Q ss_pred cccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCceeEEEEEcCCCCCC
Q 039105 242 RLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWP 321 (493)
Q Consensus 242 ~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~ 321 (493)
++|++|++|+.+++++.|++.+|++++||+||+|+|+..+.. +.+.|++|....+.+..+++.+..++++.|+.++|.
T Consensus 227 ~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~ 304 (450)
T PF01593_consen 227 RLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRAIENLPYSSVSKVFLGFDRPFWP 304 (450)
T ss_dssp ESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHHHHTEEEEEEEEEEEEESSGGGG
T ss_pred ecCCcceeccccccccccccccceEEecceeeecCchhhhhh--hhhcccccccccccccccccCcceeEEEeeeccccc
Confidence 999999999999999999999999999999999999999874 567889998888889999999989999999999998
Q ss_pred CC-CcceeecCCC--CceeeeeccccC--CCCcEEEEEecchhhHHhhcCCHHHHHHHHHHHHHHhCCC--CCCCcEEEE
Q 039105 322 NV-ELLGVVAPTS--YACGYFLNLHKA--TGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPD--ATEPVQYLV 394 (493)
Q Consensus 322 ~~-~~~g~~~~~~--~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~--~~~~~~~~~ 394 (493)
.. ...+++..+. ....+......+ .+...++.++.+.....+...+++++.+.++++|++++|. ..+|....+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~ 384 (450)
T PF01593_consen 305 PDIDFFGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPDPIDITV 384 (450)
T ss_dssp STTTESEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGEESEEEE
T ss_pred ccccccceecccCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHHhhhccccccccccccccc
Confidence 76 4555554433 122222222222 2566788888777778899999999999999999999994 556777788
Q ss_pred cccCCCCCCCccccCCCCCCChhHHHHhhCcc-CceEEeeccccCcCcchhHHHHHHHHHHHHHHH
Q 039105 395 SRWGTDPNTLGCYSYDVVGMPGDLYERLRAPL-GNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQ 459 (493)
Q Consensus 395 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aGd~~~~~~~g~~egA~~sg~~aa~~i~ 459 (493)
.+|..+++..+++....++.....++.+.+|+ +|||||||++++.++++++||+.||.+||++|+
T Consensus 385 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 385 TRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp EECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 99999999998887766666556889999999 699999999998777899999999999999885
No 20
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=5.2e-34 Score=290.11 Aligned_cols=402 Identities=17% Similarity=0.114 Sum_probs=255.9
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhCCc-
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLT- 103 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~- 103 (493)
|.+++||+|||||+|||+||++|+++|++|+|+|+++++||+++|...+|+.+|.|+|++.. .+..+.+++++++..
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~--~~~~~~~l~~~l~~~~ 78 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFS--KSPEVMDLWNEILPDD 78 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceecc--CCHHHHHHHHHhcCCC
Confidence 45678999999999999999999999999999999999999999998899999999999873 567899999999852
Q ss_pred eeeeCCCC-cccccCCccceeeecCCCccccHHHHHHH-----HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHhcChh
Q 039105 104 LYRTSGDN-SVLYDHDLESYALYDMDGNKVEKEMAIKV-----GEIFKRILNETQKVRDEHTNDMSVLQAISIVLDRHPE 177 (493)
Q Consensus 104 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 177 (493)
........ ...+.+. ...+|......+ ...+...............++.++.+|+..
T Consensus 79 ~~~~~~~~~~~~~~g~----------~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~------- 141 (479)
T PRK07208 79 DFLLRPRLSRIYYRGK----------FFDYPLKAFDALKNLGLWRTAKCGASYLKARLRPRKEEDSFEDWVIN------- 141 (479)
T ss_pred ccccccccceEEECCE----------EecCCcchhHHHHhCCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHH-------
Confidence 11111111 1112211 111121110100 011111111111111122356899998874
Q ss_pred hhhhchHHHHHHHHHHHH-HhhhcCCccccccccccccc--------------c--------------ccCCccccccCh
Q 039105 178 LRQEGLAYEVLQWYICRM-EAWFAVDADMISLKCWDQEQ--------------V--------------LSGGHGLMVQGY 228 (493)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~--------------~--------------~~~g~~~~~~G~ 228 (493)
.+.+++.+.++.++ .+.|+.+++++|+.+..... . ......++++|+
T Consensus 142 ----~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~ 217 (479)
T PRK07208 142 ----RFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGP 217 (479)
T ss_pred ----hhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCc
Confidence 36677777777774 45788889888876422100 0 012345778999
Q ss_pred HHHHHHHhh-----cCCccccceeEEEEecCCcE-E-EEE--cCCc--EEEcCEEEEecChhhhhcCcccccCCCcHHHH
Q 039105 229 DPVIKALSK-----DIDIRLNQRVTKISNGCNKV-M-VTV--EDGR--NFVADAAIVTVPLGILKANLIQFEPKLPEWKL 297 (493)
Q Consensus 229 ~~l~~~L~~-----gv~i~~~~~V~~I~~~~~~v-~-V~~--~~G~--~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~ 297 (493)
+.++++|.+ |++|++|++|++|..+++++ . ++. .+|+ ++.||+||+|+|+..+..++ .+++|+...
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l---~~~~~~~~~ 294 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAAL---DPPPPPEVR 294 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhc---CCCCCHHHH
Confidence 999988864 78999999999999987663 2 332 2453 58999999999998876532 255677777
Q ss_pred HHHhhcCCCceeEEEEEcCCCCCCCCCcceeecCCCCc---e---eeeeccccCCCCc-EEEEEecchhhHHhhcCCHHH
Q 039105 298 SAIADIGVGNENKIALRFDNVFWPNVELLGVVAPTSYA---C---GYFLNLHKATGHP-VLVYMAAGRFAYDLEKLSDES 370 (493)
Q Consensus 298 ~~~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~---~---~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~e 370 (493)
+.+..+.+.+..++.+.++++.+....+. +..+.... . ..+.....|++.. .+............+++++++
T Consensus 295 ~~~~~l~~~~~~~v~l~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~dee 373 (479)
T PRK07208 295 AAAAGLRYRDFITVGLLVKELNLFPDNWI-YIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDED 373 (479)
T ss_pred HHHhCCCcceeEEEEEEecCCCCCCCceE-EecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHH
Confidence 77788888887888899887644322211 11110100 0 1111122244443 222111111223466789999
Q ss_pred HHHHHHHHHHHhCCC-CCCCcEEEEcccCCCCCCCccccCCCCCCChhHHH---HhhCccCceEEeeccccCcCcchhHH
Q 039105 371 AANFVMMQLKKMFPD-ATEPVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYE---RLRAPLGNLFFGGEAVSMEHQGSVHG 446 (493)
Q Consensus 371 ~~~~~~~~L~~~~p~-~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~aGd~~~~~~~g~~eg 446 (493)
+++++.++|.++.+. ..+++...+.+|.. ..+.|. ++.. ...+ .+.++.+||++||++..+.+ .++|+
T Consensus 374 l~~~~~~~L~~l~~~~~~~~~~~~v~r~~~---a~P~y~---~~~~-~~~~~~~~~~~~~~~l~laGr~~~~~~-~~~d~ 445 (479)
T PRK07208 374 LIALAIQELARLGLIRPADVEDGFVVRVPK---AYPVYD---GTYE-RNVEIIRDLLDHFPNLHLVGRNGMHRY-NNQDH 445 (479)
T ss_pred HHHHHHHHHHHcCCCChhheeEEEEEEecC---cccCCC---chHH-HHHHHHHHHHHhcCCceeecccccccc-CChhH
Confidence 999999999997431 23345555666643 333332 2221 2222 13466799999999876654 69999
Q ss_pred HHHHHHHHHHHHHHH
Q 039105 447 AYSAGVMAAQNCQKY 461 (493)
Q Consensus 447 A~~sg~~aa~~i~~~ 461 (493)
|+.||.++|+.|...
T Consensus 446 a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 446 SMLTAMLAVENIIAG 460 (479)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999977765
No 21
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=4.2e-34 Score=288.58 Aligned_cols=416 Identities=18% Similarity=0.164 Sum_probs=263.5
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccC-CCCceeecccceeeCCCCCCchHHHHHHhCCce
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDY-SFGCPVDMGASWLHGVCNENPLAPLIRRLGLTL 104 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (493)
.++++|+|||||++||+||+.|+++|++|+|+|+++++||+++++. ..|+.+|.|.|++.+. +.++.++++++|++.
T Consensus 73 g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~--~~~~~~ll~~LGl~~ 150 (569)
T PLN02487 73 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGC--YNNLFRLMKKVGADE 150 (569)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCC--cHHHHHHHHhcCCcc
Confidence 4557999999999999999999999999999999999999999875 5799999999999854 468999999999974
Q ss_pred eeeCCCCcc-cccCCccceeeecCCCccccHHHHHHHH-----HHHHHHHHH--------HHHh-h-------hcCCCCC
Q 039105 105 YRTSGDNSV-LYDHDLESYALYDMDGNKVEKEMAIKVG-----EIFKRILNE--------TQKV-R-------DEHTNDM 162 (493)
Q Consensus 105 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--------~~~~-~-------~~~~~~~ 162 (493)
......... ....+.....+........+......+. ...+++... ...+ . ....++.
T Consensus 151 ~~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~ 230 (569)
T PLN02487 151 NLLVKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLDDI 230 (569)
T ss_pred cccccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhccCccccccccccccCC
Confidence 322111111 1111100000000000011111111110 000111110 0000 0 0124567
Q ss_pred CHHHHHHHHHhcChhhhhhchHHHHHHHHHHHH-HhhhcCCccccccccccccc-cc---c--CCccccccChHH-HHHH
Q 039105 163 SVLQAISIVLDRHPELRQEGLAYEVLQWYICRM-EAWFAVDADMISLKCWDQEQ-VL---S--GGHGLMVQGYDP-VIKA 234 (493)
Q Consensus 163 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~-~~---~--~g~~~~~~G~~~-l~~~ 234 (493)
++.+|+.+. +..+++++.++.|+ .+.++.+++++|+..+.... .+ . +...++.+|+.. +++.
T Consensus 231 sv~~~l~r~----------~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~p 300 (569)
T PLN02487 231 SFSDWFTSH----------GGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGP 300 (569)
T ss_pred cHHHHHHHh----------CCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHH
Confidence 888887753 33455788888884 56888999999988655221 11 1 114577888874 6666
Q ss_pred Hh-----hcCCccccceeEEEEecC--Cc---E-EEEE---cCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHH
Q 039105 235 LS-----KDIDIRLNQRVTKISNGC--NK---V-MVTV---EDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAI 300 (493)
Q Consensus 235 L~-----~gv~i~~~~~V~~I~~~~--~~---v-~V~~---~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~ 300 (493)
+. .|++|+++++|++|+.++ ++ + .|++ .+++++.+|.||+|+|+..+++++....+.. ...+.+
T Consensus 301 l~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~--~~~~~l 378 (569)
T PLN02487 301 IAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREY--EFFDNI 378 (569)
T ss_pred HHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhcc--HHHhHH
Confidence 54 389999999999999863 22 2 4555 2344689999999999998876542221111 124567
Q ss_pred hhcCCCceeEEEEEcCCCCCCCC---------Ccceee-----cCCCCceeee---e---ccccCCCCcEEEEEecchhh
Q 039105 301 ADIGVGNENKIALRFDNVFWPNV---------ELLGVV-----APTSYACGYF---L---NLHKATGHPVLVYMAAGRFA 360 (493)
Q Consensus 301 ~~~~~~~~~~v~l~~~~~~~~~~---------~~~g~~-----~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~ 360 (493)
..+.+.+...+.++|+.+.-... .+.|.. .+..+.+... . .+.......++-+++.. .
T Consensus 379 ~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~--a 456 (569)
T PLN02487 379 YKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTP--G 456 (569)
T ss_pred hcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcC--C
Confidence 77877788889999986442211 112211 1222222111 0 01112223456555544 3
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhCCCCCC--CcEEEEcccCCCCCCCccccCCCCCCChhHHHHhhCccCceEEeeccccC
Q 039105 361 YDLEKLSDESAANFVMMQLKKMFPDATE--PVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSM 438 (493)
Q Consensus 361 ~~~~~~~~~e~~~~~~~~L~~~~p~~~~--~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGd~~~~ 438 (493)
+.+..++++++++++.++|.+++|.... +.+..+.+..+ +.|. ..|+.. ..+|...||++|||+||||+..
T Consensus 457 ~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~-----at~~-~~pg~~-~~RP~~~T~~~nl~LAGD~t~~ 529 (569)
T PLN02487 457 DPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQ-----SLYR-EAPGMD-PFRPDQKTPISNFFLAGSYTKQ 529 (569)
T ss_pred ccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccC-----ceec-cCCCcc-ccCCCCCCCCCCEEEeCccccc
Confidence 4688899999999999999999988643 23333444332 2222 234442 4557888999999999999999
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHh
Q 039105 439 EHQGSVHGAYSAGVMAAQNCQKYLLK 464 (493)
Q Consensus 439 ~~~g~~egA~~sg~~aa~~i~~~l~~ 464 (493)
.||.++|||+.||.+||+.|+++...
T Consensus 530 ~yPat~EgAv~SG~~AA~~i~~~~~~ 555 (569)
T PLN02487 530 DYIDSMEGATLSGRQAAAYICEAGEE 555 (569)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999887643
No 22
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=2e-33 Score=282.41 Aligned_cols=407 Identities=18% Similarity=0.180 Sum_probs=249.7
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeecc-CCCCceeecccceeeCCCCCCchHHHHHHhCCceeeeC
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTD-YSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTS 108 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 108 (493)
+|+|||||++||+||++|+++|++|+|+|+++++||+++++ ...|+.+|.|.|++.+ .+.++.++++++|+......
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~--~~~~~~~~~~~lg~~~~~~~ 78 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFG--CYANLFRLMKKVGAEDNLLL 78 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecC--chHHHHHHHHHcCCcccccc
Confidence 58999999999999999999999999999999999999996 4579999999999985 35679999999998733221
Q ss_pred CCCccccc-CCccceeeecCCCccccHHHHHHH--------HHHHHHHHHH-----HHHh---h-----hcCCCCCCHHH
Q 039105 109 GDNSVLYD-HDLESYALYDMDGNKVEKEMAIKV--------GEIFKRILNE-----TQKV---R-----DEHTNDMSVLQ 166 (493)
Q Consensus 109 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-----~~~~---~-----~~~~~~~s~~~ 166 (493)
......+. .+.....+........|......+ .+.+...... ...+ . ....++.++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 158 (474)
T TIGR02732 79 KEHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFAE 158 (474)
T ss_pred ccceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHHH
Confidence 11111111 111111000000111121111111 1111000000 0000 0 01235678888
Q ss_pred HHHHHHhcChhhhhhchHHHHHHHHHHHH-HhhhcCCcccccccccccc-ccccC-----CccccccC-----hHHHHHH
Q 039105 167 AISIVLDRHPELRQEGLAYEVLQWYICRM-EAWFAVDADMISLKCWDQE-QVLSG-----GHGLMVQG-----YDPVIKA 234 (493)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~-~~~~~-----g~~~~~~G-----~~~l~~~ 234 (493)
|+++. +.++.+++.++.|+ .+.+..+++++|+..+... ..+.. ...++.++ .+++++.
T Consensus 159 ~l~~~----------~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~ 228 (474)
T TIGR02732 159 WFLSH----------GGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILEY 228 (474)
T ss_pred HHHHc----------CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHHH
Confidence 87753 44555788888884 5677889999988765320 01111 22344444 4557777
Q ss_pred Hhh-cCCccccceeEEEEecC--Cc---E-EEEEcCC---cEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcC
Q 039105 235 LSK-DIDIRLNQRVTKISNGC--NK---V-MVTVEDG---RNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIG 304 (493)
Q Consensus 235 L~~-gv~i~~~~~V~~I~~~~--~~---v-~V~~~~G---~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 304 (493)
|.+ |++|+++++|++|+.++ ++ + .|.+.+| +++.||+||+|+|++.+++++....+ . ....+.+..+.
T Consensus 229 L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~-~-~~~~~~l~~l~ 306 (474)
T TIGR02732 229 IEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWR-Q-FEEFDNIYKLD 306 (474)
T ss_pred HHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhh-c-CHHHhhHhcCC
Confidence 765 88999999999998754 22 3 3445444 46899999999999988765422111 1 12455677788
Q ss_pred CCceeEEEEEcCCCCCCCC---------Ccceee-----cCCCCceeee-----e-ccccCCCCcEEEEEecchhhHHhh
Q 039105 305 VGNENKIALRFDNVFWPNV---------ELLGVV-----APTSYACGYF-----L-NLHKATGHPVLVYMAAGRFAYDLE 364 (493)
Q Consensus 305 ~~~~~~v~l~~~~~~~~~~---------~~~g~~-----~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~~~~~ 364 (493)
+.+...+++.|+.+.-... ...+.. .+..+..... . .+..+.....+-+++.. +..+.
T Consensus 307 ~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~ 384 (474)
T TIGR02732 307 AVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTP--GDPWM 384 (474)
T ss_pred CCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeC--hhhhc
Confidence 8888889999986443211 011110 1111111000 0 11112223334344433 34677
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCC--CcEEEEcccCCCCCCCccccCCCCCCChhHHHHhhCccCceEEeeccccCcCcc
Q 039105 365 KLSDESAANFVMMQLKKMFPDATE--PVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQG 442 (493)
Q Consensus 365 ~~~~~e~~~~~~~~L~~~~p~~~~--~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGd~~~~~~~g 442 (493)
+++++++++.++++|++++|...+ +.+..+.+..+ +.+. ..|+.. ..+|...||++|||+||||+...|+.
T Consensus 385 ~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~-----a~~~-~~pg~~-~~~P~~~t~~~~l~lAGD~t~~~~pa 457 (474)
T TIGR02732 385 PESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQ-----SLYR-EAPGMD-PFRPDQKTPISNFFLAGSYTQQDYID 457 (474)
T ss_pred CCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecC-----ceec-cCCCCc-ccCCCCCCCCCCeEEeccccccCchH
Confidence 899999999999999999997543 33333344332 1221 124442 45577888999999999999999989
Q ss_pred hhHHHHHHHHHHHHHHH
Q 039105 443 SVHGAYSAGVMAAQNCQ 459 (493)
Q Consensus 443 ~~egA~~sg~~aa~~i~ 459 (493)
++|||+.||.+||+.|+
T Consensus 458 s~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 458 SMEGATLSGRQAAAAIL 474 (474)
T ss_pred HHhHHHHHHHHHHHHhC
Confidence 99999999999999763
No 23
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=1.1e-32 Score=276.65 Aligned_cols=388 Identities=22% Similarity=0.233 Sum_probs=252.2
Q ss_pred HHHHHHHhCCCcEEEEeeCCCCCceeeccCCCCce--eecccceeeCCCCCCchHHHHHHhCCceeee-CCCCcccccCC
Q 039105 42 AAARILYDASFKVVLLESRDRLGGRIHTDYSFGCP--VDMGASWLHGVCNENPLAPLIRRLGLTLYRT-SGDNSVLYDHD 118 (493)
Q Consensus 42 saA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g~~--~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~-~~~~~~~~~~~ 118 (493)
+||++|+++|++|+|+||++++||+++|...+|+. +|.|+|++++ .+.++.+++++||++.... ......++..+
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~--~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~ 78 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLG--AYTNLLALLRRIGAEPRLQGPRLPLPFYDPG 78 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEc--ccHHHHHHHHHhCCchhhhcccCCcceecCC
Confidence 58999999999999999999999999999888654 9999999984 4567999999999985433 11111222211
Q ss_pred ccceeeecCCCccccHHHHHHH----------HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHhcChhhhhhchHHHHH
Q 039105 119 LESYALYDMDGNKVEKEMAIKV----------GEIFKRILNETQKVRDEHTNDMSVLQAISIVLDRHPELRQEGLAYEVL 188 (493)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (493)
...+.+. ......|......+ ...+.+.+....+......++.++.+|+++. .+++++.
T Consensus 79 ~~~~~~~-~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~----------~~~~~~~ 147 (419)
T TIGR03467 79 GRLSRLR-LSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRTRFRALDDTTVGDWLQAA----------GQSERLI 147 (419)
T ss_pred CCceeec-CCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHc----------CCCHHHH
Confidence 1111111 11111121111110 0011111111111111345678899988753 3466777
Q ss_pred HHHHHHH-HhhhcCCccccccccccccc---cc----cCCccccccChHHHHHH-Hh-----hcCCccccceeEEEEecC
Q 039105 189 QWYICRM-EAWFAVDADMISLKCWDQEQ---VL----SGGHGLMVQGYDPVIKA-LS-----KDIDIRLNQRVTKISNGC 254 (493)
Q Consensus 189 ~~~~~~~-~~~~~~~~~~~s~~~~~~~~---~~----~~g~~~~~~G~~~l~~~-L~-----~gv~i~~~~~V~~I~~~~ 254 (493)
+.++.++ .+.++.+++++|+..+.... .. ..+..++.+|+..++.. |. .|++|++|++|++|+.++
T Consensus 148 ~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~ 227 (419)
T TIGR03467 148 ERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANA 227 (419)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcC
Confidence 7777764 46778888888877554221 11 12356778898775533 43 378999999999999988
Q ss_pred CcEEEEE-cCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCceeEEEEEcCCCCCCCCCcceeecCCC
Q 039105 255 NKVMVTV-EDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLGVVAPTS 333 (493)
Q Consensus 255 ~~v~V~~-~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~ 333 (493)
+++.+.. .+|++++||+||+|+|+..+..++ +. +...+.+..+.|.+..++++.|+.++|.+..+.+.....
T Consensus 228 ~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll----~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~- 300 (419)
T TIGR03467 228 GGIRALVLSGGETLPADAVVLAVPPRHAASLL----PG--EDLGALLTALGYSPITTVHLRLDRAVRLPAPMVGLVGGL- 300 (419)
T ss_pred CcceEEEecCCccccCCEEEEcCCHHHHHHhC----CC--chHHHHHhhcCCcceEEEEEEeCCCcCCCCCeeeecCCc-
Confidence 8765433 467789999999999999987642 21 134567788899888899999999998655555543322
Q ss_pred CceeeeeccccCCCCcEEEEEecchhhHHhhcCCHHHHHHHHHHHHHHhCCCC--CCCcEEEEcccCCCCCCCccccCCC
Q 039105 334 YACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDA--TEPVQYLVSRWGTDPNTLGCYSYDV 411 (493)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~--~~~~~~~~~~w~~~~~~~~~~~~~~ 411 (493)
....+.....++....+.++..+ ...+.+++++++++.++++|++++|.. ..+....+.+|....+. . .
T Consensus 301 -~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~ 371 (419)
T TIGR03467 301 -AQWLFDRGQLAGEPGYLAVVISA--ARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFA-----A-T 371 (419)
T ss_pred -eeEEEECCcCCCCCCEEEEEEec--chhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccc-----c-C
Confidence 11122222222223444444443 456778899999999999999999865 23444455666543221 1 1
Q ss_pred CCCChhHHHHhhCccCceEEeeccccCcCcchhHHHHHHHHHHHHHHH
Q 039105 412 VGMPGDLYERLRAPLGNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQ 459 (493)
Q Consensus 412 ~~~~~~~~~~~~~~~~~l~~aGd~~~~~~~g~~egA~~sg~~aa~~i~ 459 (493)
|+.. ..++.+.+|.+|||+|||+++..+++++|||+.||.+||++|+
T Consensus 372 ~g~~-~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 372 PGLN-RLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred Cccc-ccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 3322 3345566788999999999998777899999999999999875
No 24
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=3.1e-32 Score=277.55 Aligned_cols=426 Identities=19% Similarity=0.160 Sum_probs=237.8
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhCCceee--
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYR-- 106 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~-- 106 (493)
.||+|||||++||+||..|+++|++|+|+|+++++||++++++..|+.+|.|+|++.+.........+++++|++...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 81 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEAK 81 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcccc
Confidence 689999999999999999999999999999999999999999999999999999998654456678999999987431
Q ss_pred -eCCCCcccccCCccceeeecCCCccccHHHHH------HHHHHHHHHHHHHHHhhhc--CCCCCCHHHHHHHHH-----
Q 039105 107 -TSGDNSVLYDHDLESYALYDMDGNKVEKEMAI------KVGEIFKRILNETQKVRDE--HTNDMSVLQAISIVL----- 172 (493)
Q Consensus 107 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~----- 172 (493)
......+.+.++...+.+. .+...+..+... .+...+.+........... .....+..+......
T Consensus 82 ~~d~~~~~~~~dg~~~~~~~-~d~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (492)
T TIGR02733 82 ILDPACAVDLPDGSEPIPLW-HDPDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRPD 160 (492)
T ss_pred cCCCCcEEEECCCceEeeee-cCHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcChh
Confidence 1111112222111111111 111000000000 0000111111110000000 000011111111000
Q ss_pred -------hcCh--h-hhhhc-hHHHHHHHHHHHHHh-hhcCCcccccccccc---ccccccCCccccccChHHHHHHHhh
Q 039105 173 -------DRHP--E-LRQEG-LAYEVLQWYICRMEA-WFAVDADMISLKCWD---QEQVLSGGHGLMVQGYDPVIKALSK 237 (493)
Q Consensus 173 -------~~~~--~-~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~---~~~~~~~g~~~~~~G~~~l~~~L~~ 237 (493)
...+ + +...+ +..+.++.++..... +.+.++.+.++.... .......|.+++.+|++.|+++|.+
T Consensus 161 ~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~GG~~~l~~aL~~ 240 (492)
T TIGR02733 161 TLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMAQAPHGLWHLHGSMQTLSDRLVE 240 (492)
T ss_pred hhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhccccCCCceeecCcHHHHHHHHHH
Confidence 0000 0 11111 333334444443322 233444455443321 1222235677899999999999864
Q ss_pred -----cCCccccceeEEEEecCCcE-EEEEcCC-----cEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCC
Q 039105 238 -----DIDIRLNQRVTKISNGCNKV-MVTVEDG-----RNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVG 306 (493)
Q Consensus 238 -----gv~i~~~~~V~~I~~~~~~v-~V~~~~G-----~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 306 (493)
|++|+++++|++|..+++++ .|.+.+| ++++||+||+|+|+..+..++ ..+.+++...+.+..+.+.
T Consensus 241 ~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll--~~~~~~~~~~~~~~~~~~s 318 (492)
T TIGR02733 241 ALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELL--GPLGLPPGYRKRLKKLPEP 318 (492)
T ss_pred HHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhc--CcccCCHHHHHHHhcCCCC
Confidence 78999999999999887753 3444343 578999999999998886532 2356677766777777776
Q ss_pred cee-EEEEEcCCCCCC---CCCcceeecCCCCceee---eeccccCCCCcEEEEEecchh-------hHHhhcCCHHHHH
Q 039105 307 NEN-KIALRFDNVFWP---NVELLGVVAPTSYACGY---FLNLHKATGHPVLVYMAAGRF-------AYDLEKLSDESAA 372 (493)
Q Consensus 307 ~~~-~v~l~~~~~~~~---~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~e~~ 372 (493)
... .+++.++....+ ...+............. .++...|.|+.++++....+. ..+|.+. ++++.
T Consensus 319 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~-k~~~~ 397 (492)
T TIGR02733 319 SGAFVFYLGVKRAALPVDCPPHLQFLSDHQGSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAK-KKQYT 397 (492)
T ss_pred CceEEEEEeecccccCCCCCcceeeccCCCceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHH-HHHHH
Confidence 654 678888753211 11111111111100000 111234667777655443322 1123332 55688
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEc----ccCCC-CCCCcc-ccCC-CCCCChhHHHHhhCccCceEEeeccccCcCcchhH
Q 039105 373 NFVMMQLKKMFPDATEPVQYLVS----RWGTD-PNTLGC-YSYD-VVGMPGDLYERLRAPLGNLFFGGEAVSMEHQGSVH 445 (493)
Q Consensus 373 ~~~~~~L~~~~p~~~~~~~~~~~----~w~~~-~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~aGd~~~~~~~g~~e 445 (493)
+.+++.|++.+|++++.+..... .|... ....|+ |... .+.+....++..++|++|||+||++++++ +++.
T Consensus 398 ~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~pG--~Gv~ 475 (492)
T TIGR02733 398 QTIIERLGHYFDLLEENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHPG--EGTA 475 (492)
T ss_pred HHHHHHHHHHCCCccccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCccCCC--CcHH
Confidence 99999999999998765443211 11111 111221 1111 12222112223368999999999998652 4899
Q ss_pred HHHHHHHHHHHHHHH
Q 039105 446 GAYSAGVMAAQNCQK 460 (493)
Q Consensus 446 gA~~sg~~aa~~i~~ 460 (493)
|++.||+.||+.|++
T Consensus 476 g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 476 GVSYSALMVVRQILA 490 (492)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999875
No 25
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=1.2e-31 Score=274.09 Aligned_cols=424 Identities=17% Similarity=0.167 Sum_probs=233.2
Q ss_pred EEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhCCce------
Q 039105 31 VIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTL------ 104 (493)
Q Consensus 31 v~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~------ 104 (493)
|||||||++||+||.+|+++|++|+|+||++++||+++|+..+|+.+|.|++++.. ...+.++++++|+++
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~---~~~~~~l~~~lg~~l~~~l~~ 77 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM---PEALEELFALAGRDLADYVEL 77 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEcc---ccHHHHHHHHcCCChhheEEE
Confidence 69999999999999999999999999999999999999999999999999999862 356788889998542
Q ss_pred eeeCCCCcccccCCccceeeecCCCccccHHHHH---HHHHHHHHHHHHHHHhhhc------CCCCCCHHHHHHH----H
Q 039105 105 YRTSGDNSVLYDHDLESYALYDMDGNKVEKEMAI---KVGEIFKRILNETQKVRDE------HTNDMSVLQAISI----V 171 (493)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~s~~~~~~~----~ 171 (493)
.+.+....+.+.++ ..+.+. .+...+...... ...+.+.++......+... ...-.+..+.+.. .
T Consensus 78 ~~~~~~~~~~~~~g-~~~~~~-~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (502)
T TIGR02734 78 VPLDPFYRLCWEDG-SQLDVD-NDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQL 155 (502)
T ss_pred EECCCceEEECCCC-CEEEec-CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhh
Confidence 22222222222211 111111 111100000000 0011222232222221110 0001111111111 0
Q ss_pred Hhc---C--hhhhhhchHHHHHHHHHHHHHhhhcCCcccccccccc-ccccccCCccccccChHHHHHHHhh-----cCC
Q 039105 172 LDR---H--PELRQEGLAYEVLQWYICRMEAWFAVDADMISLKCWD-QEQVLSGGHGLMVQGYDPVIKALSK-----DID 240 (493)
Q Consensus 172 ~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~g~~~~~~G~~~l~~~L~~-----gv~ 240 (493)
... . ..+....+..+.++.++.....+++.++.+.++.... ......++.+++.+|+..++++|.+ |++
T Consensus 156 ~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~~~~~~~~l~~~~~~~~g~~~~~gG~~~l~~al~~~~~~~G~~ 235 (502)
T TIGR02734 156 LALLAWRSLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISALEREWGVWFPRGGTGALVAAMAKLAEDLGGE 235 (502)
T ss_pred hhccCcCCHHHHHHhhcCCHHHHHHhcccceeeccCcccchHHHHHHHHHHhhceEEEcCCCHHHHHHHHHHHHHHCCCE
Confidence 000 0 0011112223334434332233455555555433221 2223356777899999999998864 889
Q ss_pred ccccceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCce-eEEEEEcC--
Q 039105 241 IRLNQRVTKISNGCNK-VMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNE-NKIALRFD-- 316 (493)
Q Consensus 241 i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~v~l~~~-- 316 (493)
|+++++|++|..++++ +.|++.+|++++||.||+|+++..+...++. .+..+....+.+..+.+... ..+++.++
T Consensus 236 i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~ 314 (502)
T TIGR02734 236 LRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLP-NHPRRRYPAARLSRKRPSPSLFVLYFGLLGV 314 (502)
T ss_pred EEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcC-ccccccccccccccCCcCCeeeEEEEeeccc
Confidence 9999999999987776 5788889988999999999998766433321 11122223344445554433 35677766
Q ss_pred -CCCCCCCCcceeec-CC---------------CCceeee------eccccCCCCcEEEEEecchhh----HHhhcCCHH
Q 039105 317 -NVFWPNVELLGVVA-PT---------------SYACGYF------LNLHKATGHPVLVYMAAGRFA----YDLEKLSDE 369 (493)
Q Consensus 317 -~~~~~~~~~~g~~~-~~---------------~~~~~~~------~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~ 369 (493)
.. ++......++. ++ .....+. ++...|.|+..+.+++..... ..|.. ..+
T Consensus 315 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~~-~k~ 392 (502)
T TIGR02734 315 DGH-WPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDWSV-EGP 392 (502)
T ss_pred cCc-CCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCcHH-HHH
Confidence 23 22111101111 00 0011111 122346676666555433221 12322 256
Q ss_pred HHHHHHHHHHHHh-CCCCCCCcEEEEcc----cCCC-CCCCcc-ccCC-CCCCChhHHHH-hhCccCceEEeeccccCcC
Q 039105 370 SAANFVMMQLKKM-FPDATEPVQYLVSR----WGTD-PNTLGC-YSYD-VVGMPGDLYER-LRAPLGNLFFGGEAVSMEH 440 (493)
Q Consensus 370 e~~~~~~~~L~~~-~p~~~~~~~~~~~~----w~~~-~~~~~~-~~~~-~~~~~~~~~~~-~~~~~~~l~~aGd~~~~~~ 440 (493)
++.+++++.|++. +|++++.+...... |... ....|+ |... ...+....+|. ..+|++|||+||++++++
T Consensus 393 ~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~pG- 471 (502)
T TIGR02734 393 RYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPG- 471 (502)
T ss_pred HHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCCCC-
Confidence 7899999999998 99987654433110 1110 011121 1111 11221122332 357899999999998652
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHh
Q 039105 441 QGSVHGAYSAGVMAAQNCQKYLLK 464 (493)
Q Consensus 441 ~g~~egA~~sg~~aa~~i~~~l~~ 464 (493)
+++.+|+.||+.||+.|+.+.+.
T Consensus 472 -~Gv~g~~~sg~~~a~~il~~~~~ 494 (502)
T TIGR02734 472 -AGVPGVLGSAKATAKLMLGDLAP 494 (502)
T ss_pred -CCHHHHHHHHHHHHHHHHhhccC
Confidence 48999999999999999876443
No 26
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=1.9e-30 Score=263.88 Aligned_cols=427 Identities=19% Similarity=0.166 Sum_probs=230.9
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCC---CCchHHHHHHhCCcee
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCN---ENPLAPLIRRLGLTLY 105 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~---~~~~~~l~~~lg~~~~ 105 (493)
+||+|||||++||+||..|+++|++|+|+||++.+||+++++..+|+.+|.|++++.+... ...+.++++.++....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLE 80 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCccc
Confidence 6999999999999999999999999999999999999999999999999999999875532 2235667777775433
Q ss_pred eeCCCCc--ccccCCccceeeecCCCccccHHHHH---HHHHHHHHHHHHHHHhhh----cCCCC-CCHHHHHHHHH---
Q 039105 106 RTSGDNS--VLYDHDLESYALYDMDGNKVEKEMAI---KVGEIFKRILNETQKVRD----EHTND-MSVLQAISIVL--- 172 (493)
Q Consensus 106 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~-~s~~~~~~~~~--- 172 (493)
....... +.+.++. ...+. .+...+...... .-.+.+.++...+.++.. ..... .........+.
T Consensus 81 ~~~~~~~~~~~~~~g~-~~~~~-~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (493)
T TIGR02730 81 TIPDPVQIHYHLPNGL-NVKVH-REYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHP 158 (493)
T ss_pred ccCCCccEEEECCCCe-eEeee-cCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhch
Confidence 2221111 1111111 11111 111111011000 011223333332222111 00000 00000000000
Q ss_pred ----------hcC-hhhhhhchHHHHHHHHHHHHHhhhcCC-cccccccccc-c-cccccCCccccccChHHHHHHHhh-
Q 039105 173 ----------DRH-PELRQEGLAYEVLQWYICRMEAWFAVD-ADMISLKCWD-Q-EQVLSGGHGLMVQGYDPVIKALSK- 237 (493)
Q Consensus 173 ----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~-~-~~~~~~g~~~~~~G~~~l~~~L~~- 237 (493)
... ..+....+..+.++.++......++.. +.+.+..... . .....++.+++.+|+..++++|.+
T Consensus 159 ~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~g~~~~~gG~~~l~~~L~~~ 238 (493)
T TIGR02730 159 LACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSDRHYGGINYPKGGVGQIAESLVKG 238 (493)
T ss_pred hhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhcccccceEecCCChHHHHHHHHHHH
Confidence 000 011111222233333333322333332 2333322211 1 113346778899999999988864
Q ss_pred ----cCCccccceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCc-eeEE
Q 039105 238 ----DIDIRLNQRVTKISNGCNK-VMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGN-ENKI 311 (493)
Q Consensus 238 ----gv~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~v 311 (493)
|++|+++++|++|..++++ ..|++.+|++++||+||+|+++..+...++. .+.+++.....+..+.+.. ..++
T Consensus 239 ~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~s~s~~~~ 317 (493)
T TIGR02730 239 LEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK-AENLPKKEKNWQRNYVKSPSFLSL 317 (493)
T ss_pred HHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC-ccccchhhHHHHhhccCCCceEEE
Confidence 8899999999999987666 4688889988999999999977655432221 1223343334444555443 4467
Q ss_pred EEEcCCCCCCCCCc-ceeecC------CCCcee--e----eeccccCCCCcEEEEEecchhh-------HHhhcCCHHHH
Q 039105 312 ALRFDNVFWPNVEL-LGVVAP------TSYACG--Y----FLNLHKATGHPVLVYMAAGRFA-------YDLEKLSDESA 371 (493)
Q Consensus 312 ~l~~~~~~~~~~~~-~g~~~~------~~~~~~--~----~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~e~ 371 (493)
++..+....+.... ...+.. ...... . .++...|.|+.++..+++.... .+|.. .++++
T Consensus 318 ~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~-~k~~~ 396 (493)
T TIGR02730 318 HLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEA-KKEAD 396 (493)
T ss_pred EEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHH-HHHHH
Confidence 88777643221100 001100 000110 1 1122346677777666643221 12222 25668
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEc----ccCC-CCCCCccccCCCC-CCChhHH-HHhhCccCceEEeeccccCcCcchh
Q 039105 372 ANFVMMQLKKMFPDATEPVQYLVS----RWGT-DPNTLGCYSYDVV-GMPGDLY-ERLRAPLGNLFFGGEAVSMEHQGSV 444 (493)
Q Consensus 372 ~~~~~~~L~~~~p~~~~~~~~~~~----~w~~-~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~l~~aGd~~~~~~~g~~ 444 (493)
.+.+++.|++.+|++++-+..... .|.. .....|.|....- .+....+ +..++|++|||+||+++++ ++++
T Consensus 397 ~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~p--G~Gv 474 (493)
T TIGR02730 397 AERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFP--GQGL 474 (493)
T ss_pred HHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCC--CCCH
Confidence 899999999999998665433211 1211 0112233321000 0000011 2356899999999999865 2589
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039105 445 HGAYSAGVMAAQNCQKY 461 (493)
Q Consensus 445 egA~~sg~~aa~~i~~~ 461 (493)
.+|+.||+.||+.|+.+
T Consensus 475 ~g~~~sG~~~a~~i~~~ 491 (493)
T TIGR02730 475 NAVAFSGFACAHRVAAD 491 (493)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999875
No 27
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.98 E-value=2.2e-31 Score=231.31 Aligned_cols=322 Identities=20% Similarity=0.203 Sum_probs=224.6
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhCCceeeeC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRTS 108 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 108 (493)
.+|+||||||+||+||+.|+.+|.+|+||||...+|||+.|.+..|..+|+|+.+|.. .+..+.++++.+.-+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~--~~~~F~~~Ve~~~~~----- 74 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKP--RDELFLRAVEALRDD----- 74 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecC--CchHHHHHHHHHHhC-----
Confidence 5799999999999999999999999999999999999999999999999999999973 344555555444322
Q ss_pred CCCcccccCCccceeeecCCCccccHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHhcChhhhhhchHHHHH
Q 039105 109 GDNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTNDMSVLQAISIVLDRHPELRQEGLAYEVL 188 (493)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (493)
++-+...
T Consensus 75 -------------------------------------------------------------------------glV~~W~ 81 (331)
T COG3380 75 -------------------------------------------------------------------------GLVDVWT 81 (331)
T ss_pred -------------------------------------------------------------------------Cceeecc
Confidence 0000000
Q ss_pred HHHHHHHHhhhcCCccccccccccccccccCCccccccChHHHHHHHhhcCCccccceeEEEEecCCcEEEEEcCC-cEE
Q 039105 189 QWYICRMEAWFAVDADMISLKCWDQEQVLSGGHGLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDG-RNF 267 (493)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g~~~~~~G~~~l~~~L~~gv~i~~~~~V~~I~~~~~~v~V~~~~G-~~~ 267 (493)
..+...-+. ..+-. ....-+.-.-||.+|++.|+..++|+++++|++|...++.+++.+++| +..
T Consensus 82 ----~~~~~~~~~---~~~~~-------~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~ 147 (331)
T COG3380 82 ----PAVWTFTGD---GSPPR-------GDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHT 147 (331)
T ss_pred ----ccccccccC---CCCCC-------CCCCccccCcchHHHHHHHhccchhhhhhhhhhheecCCeeEEEecCCCccc
Confidence 000000000 00000 000013456789999999999999999999999999988999999666 467
Q ss_pred EcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCceeEEEEEcCCCCCCCCCcceeecCCCCceeeeec-----c
Q 039105 268 VADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLGVVAPTSYACGYFLN-----L 342 (493)
Q Consensus 268 ~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~ 342 (493)
++|.||+|.|.+++..++-.....+|...+.++..+.|.+...+.++|..+.-.. +.|++.+ .....|+.- .
T Consensus 148 ~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P--~~G~~vd-g~~laWla~d~sK~g 224 (331)
T COG3380 148 QFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDRP--WPGNFVD-GHPLAWLARDASKKG 224 (331)
T ss_pred ccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCCC--CCCcccC-CCeeeeeeccccCCC
Confidence 9999999999998866443334567888899999999998888889988665432 2232222 222223221 1
Q ss_pred ccCCCCcEEEEEecchhhHHhhcCCHHHHHHHHHHHHHHhCC-CCCCCcEEEEcccCCCCCCCccccCCCCCCChhHHHH
Q 039105 343 HKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFP-DATEPVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYER 421 (493)
Q Consensus 343 ~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 421 (493)
+.|.+. ++++.....++....+.++++.+..+......+.+ .+.+|.....++|.. ..+.-....| +.
T Consensus 225 ~~p~~~-~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~~p~~s~~H~WrY---A~P~~~~~~~-------~L 293 (331)
T COG3380 225 HVPDGE-IWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPEPDWSDAHRWRY---AIPNDAVAGP-------PL 293 (331)
T ss_pred CCCcCc-eEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCCCcchHHHhhcccc---ccccccccCC-------cc
Confidence 223333 77888888888889999999888888888888775 566777667788863 1111111111 11
Q ss_pred hhCccCceEEeeccccCcCcchhHHHHHHHHHHHHHHHHH
Q 039105 422 LRAPLGNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQKY 461 (493)
Q Consensus 422 ~~~~~~~l~~aGd~~~~~~~g~~egA~~sg~~aa~~i~~~ 461 (493)
...+-.+||+||||++. |-+|||..||..+|++|++.
T Consensus 294 ~ad~~~~l~~cGDwc~G---grVEgA~LSGlAaA~~i~~~ 330 (331)
T COG3380 294 DADRELPLYACGDWCAG---GRVEGAVLSGLAAADHILNG 330 (331)
T ss_pred ccCCCCceeeecccccC---cchhHHHhccHHHHHHHHhc
Confidence 11233689999999864 78999999999999999864
No 28
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.96 E-value=2.5e-27 Score=212.92 Aligned_cols=281 Identities=20% Similarity=0.191 Sum_probs=199.5
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccC----CCCceeecccceeeCCCCCCchHHHHHHhC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDY----SFGCPVDMGASWLHGVCNENPLAPLIRRLG 101 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~----~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (493)
.++.+|+|||+|+|||||||.|++. ++|++||+++++||+++|.. .+|+-+|.|.+.++.. .+.++.+|++++|
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~-tYpnl~~Lf~~iG 83 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNER-TYPNLTRLFKTIG 83 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCC-CcchHHHHHHHcC
Confidence 3678999999999999999999987 79999999999999999973 3467899999998864 6789999999999
Q ss_pred CceeeeCCCCcccccCCcccee-------eecCCCccccHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHhc
Q 039105 102 LTLYRTSGDNSVLYDHDLESYA-------LYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTNDMSVLQAISIVLDR 174 (493)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 174 (493)
++.....++..+..+.+...+. ++......+.+.+...+++.+...+....+.......+.++.+|++.
T Consensus 84 v~t~as~Msf~v~~d~gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl~~~L~~---- 159 (447)
T COG2907 84 VDTKASFMSFSVSLDMGGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTTLAQYLKQ---- 159 (447)
T ss_pred CCCcccceeEEEEecCCceeeccCCCccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCccHHHHHHh----
Confidence 9988888887777665433222 22223333444444444333322221111111223456788888765
Q ss_pred ChhhhhhchHHHHHHHHHHHHH-hhhcCCcccccccccccc----------ccccCC-ccccccChHHHHHHHhhcCC--
Q 039105 175 HPELRQEGLAYEVLQWYICRME-AWFAVDADMISLKCWDQE----------QVLSGG-HGLMVQGYDPVIKALSKDID-- 240 (493)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~----------~~~~~g-~~~~~~G~~~l~~~L~~gv~-- 240 (493)
++|++-+.+.++.|+. +.+.++..+.+..-.... ...... ...+.+|...-+++|..++.
T Consensus 160 ------~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~~~~~ 233 (447)
T COG2907 160 ------RNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAADIRGR 233 (447)
T ss_pred ------cCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhccccce
Confidence 5899999999999964 567766666654321111 111111 23466899999999999874
Q ss_pred ccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCceeEEEEEcCCCCC
Q 039105 241 IRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFW 320 (493)
Q Consensus 241 i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~~~ 320 (493)
|.++++|.+|..--+++.++..+|++-++|.||.|+.+.+...++ ++-+++.++.+..+.|.. +.+.++.+..+.
T Consensus 234 i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL----~e~sp~e~qll~a~~Ys~-n~aVlhtd~~lm 308 (447)
T COG2907 234 IETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALL----DEPSPEERQLLGALRYSA-NTAVLHTDASLM 308 (447)
T ss_pred eecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhc----CCCCHHHHHHHHhhhhhh-ceeEEeeccccc
Confidence 999999999999888899988899999999999999988865432 233455567889999965 445666676665
Q ss_pred CCC
Q 039105 321 PNV 323 (493)
Q Consensus 321 ~~~ 323 (493)
+.+
T Consensus 309 PrR 311 (447)
T COG2907 309 PRR 311 (447)
T ss_pred ccc
Confidence 543
No 29
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=1.5e-26 Score=233.15 Aligned_cols=249 Identities=26% Similarity=0.308 Sum_probs=143.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhC-Ccee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLG-LTLY 105 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg-~~~~ 105 (493)
+++||||||||++||+||.+|+|+|++|+|+||++++||+++|....||.+|+|++++... ....++++++ ++..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~----~~~~~~~~l~~l~~~ 77 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMP----DPGPLFRELGNLDAD 77 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecC----chHHHHHHhccCccc
Confidence 4699999999999999999999999999999999999999999999999999999887643 2225666666 4421
Q ss_pred ---eeCC-CCcccccCCccceeeecCCCccccHHHH---HHHHHHHHHHHHHHHH----hhhc----CCC-----CCCHH
Q 039105 106 ---RTSG-DNSVLYDHDLESYALYDMDGNKVEKEMA---IKVGEIFKRILNETQK----VRDE----HTN-----DMSVL 165 (493)
Q Consensus 106 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~----~~~-----~~s~~ 165 (493)
.... .....+.++....... .+......... ....+.+.++.....+ .... ... .....
T Consensus 78 ~l~~~~~~~~~~~~~~~g~~~~~~-~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (487)
T COG1233 78 GLDLLPPDPAYRVFLPDGDAIDVY-TDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDTPE 156 (487)
T ss_pred ceeeeccCCceeeecCCCCEEEec-CCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHH
Confidence 1111 1111111110011110 11000000000 0001112222221111 1110 001 01111
Q ss_pred HHHHHH---HhcChhhhhhchHHHHHHHHHHHHHhhhcCCccccc-cccccccccccCCccccccChHHHHHHHhh----
Q 039105 166 QAISIV---LDRHPELRQEGLAYEVLQWYICRMEAWFAVDADMIS-LKCWDQEQVLSGGHGLMVQGYDPVIKALSK---- 237 (493)
Q Consensus 166 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~g~~~~~~G~~~l~~~L~~---- 237 (493)
.++... ...........|..+.++..+.......+.++...+ +..........+|..++++|+++++++|.+
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~~~p~~~~a~~~~~~~~~~~~G~~~p~GG~~al~~aL~~~~~~ 236 (487)
T COG1233 157 RLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGGAPPSTPPALYLLLSHLGLSGGVFYPRGGMGALVDALAELARE 236 (487)
T ss_pred HHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhcccCCeeeeeCCHHHHHHHHHHHHHH
Confidence 222110 001111111124444444444332221113444443 222223445567889999999999999976
Q ss_pred -cCCccccceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecChhh
Q 039105 238 -DIDIRLNQRVTKISNGCNK-VMVTVEDGRNFVADAAIVTVPLGI 280 (493)
Q Consensus 238 -gv~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~a~~~~~ 280 (493)
|++|+++++|++|..++++ +++++.+|+.+++|.||++..+..
T Consensus 237 ~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~ 281 (487)
T COG1233 237 HGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPAL 281 (487)
T ss_pred cCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhh
Confidence 8999999999999998875 778888887899999999998743
No 30
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.94 E-value=9.2e-25 Score=202.12 Aligned_cols=407 Identities=22% Similarity=0.215 Sum_probs=255.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCc--EEEEeeCCCCCceeec-cCCCCceeecccceeeCCCC-CCchHHHHHHhCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFK--VVLLESRDRLGGRIHT-DYSFGCPVDMGASWLHGVCN-ENPLAPLIRRLGL 102 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~--V~v~E~~~~~GG~~~s-~~~~g~~~d~G~~~~~~~~~-~~~~~~l~~~lg~ 102 (493)
...+|+|||||+|||+|||+|++++.+ |+|+|+.+|+||+++| ..-.|+.||-|+..+.+... +..+.+++.+||+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl 89 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGL 89 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCc
Confidence 568899999999999999999999765 5669999999999999 44568999999999876532 2358899999999
Q ss_pred ceeeeCCCCcccccCCccceeeecCCCccccHHHHHHH--------HHHHHHHHHHHHH-hhhcCCCCCCHHHHHHHHHh
Q 039105 103 TLYRTSGDNSVLYDHDLESYALYDMDGNKVEKEMAIKV--------GEIFKRILNETQK-VRDEHTNDMSVLQAISIVLD 173 (493)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~ 173 (493)
+...+..+..-.-.. ..+..+......+|.+..... ...+..++....+ -......|+|+..+.++
T Consensus 90 ~~e~~~i~~~~paak--nr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e~fr~~~~~~~~dESV~sF~~R--- 164 (491)
T KOG1276|consen 90 EDELQPIDISHPAAK--NRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRELFRKKVSDPSADESVESFARR--- 164 (491)
T ss_pred cceeeecCCCChhhh--heeeccCcccccCCcccccccccccCcccchhHHHHHhhhccccCCCCCccccHHHHHHH---
Confidence 733222111100000 011112222222222221110 1112222222111 12345567888887664
Q ss_pred cChhhhhhchHHHHHHHHHHH-HHhhhcCCcccccccccc-c----cc---cc---------------------------
Q 039105 174 RHPELRQEGLAYEVLQWYICR-MEAWFAVDADMISLKCWD-Q----EQ---VL--------------------------- 217 (493)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~-~----~~---~~--------------------------- 217 (493)
+|++++.++++.+ +.+.++.+++++|+.... . +. .+
T Consensus 165 --------rfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~ 236 (491)
T KOG1276|consen 165 --------RFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKK 236 (491)
T ss_pred --------hhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcc
Confidence 6889999999888 468999999999987422 1 00 00
Q ss_pred -cCCccccccChHHHHHHHhhc-----CCccccceeEEEEecC-CcEEE--EEcCCc-EEEcCEEEEecChhhhhcCccc
Q 039105 218 -SGGHGLMVQGYDPVIKALSKD-----IDIRLNQRVTKISNGC-NKVMV--TVEDGR-NFVADAAIVTVPLGILKANLIQ 287 (493)
Q Consensus 218 -~~g~~~~~~G~~~l~~~L~~g-----v~i~~~~~V~~I~~~~-~~v~V--~~~~G~-~~~ad~VI~a~~~~~l~~~~~~ 287 (493)
....+.+.+|++.+.+++.++ +.|.++-++..+.... +++.+ ...++. .+..+++..+.|...++.++
T Consensus 237 e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll-- 314 (491)
T KOG1276|consen 237 EKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLL-- 314 (491)
T ss_pred cccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhhhc--
Confidence 001245678888888888763 4677888888887643 44554 444554 34566777788888876543
Q ss_pred ccCCCcHHHHHHHhhcCCCceeEEEEEcCCC-CCCCCCcceeecCCC--Cc----eeeeecccc--CCCCcEEEEEecch
Q 039105 288 FEPKLPEWKLSAIADIGVGNENKIALRFDNV-FWPNVELLGVVAPTS--YA----CGYFLNLHK--ATGHPVLVYMAAGR 358 (493)
Q Consensus 288 ~~~~l~~~~~~~~~~~~~~~~~~v~l~~~~~-~~~~~~~~g~~~~~~--~~----~~~~~~~~~--~~~~~~l~~~~~~~ 358 (493)
+++.+.....+..+.|.+...|.+.|..+ ...+-...|...|+. .. -..|++..- -.+.+.+++++.+-
T Consensus 315 --~~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~ 392 (491)
T KOG1276|consen 315 --RGLQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSPKVTVMMGGG 392 (491)
T ss_pred --cccchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCCceEEEEeccc
Confidence 34444445677788999988898888764 334445667777631 11 123333221 22333666666554
Q ss_pred hhH--HhhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCccccCCCCCCCh--hHHHHhhCcc--CceEEe
Q 039105 359 FAY--DLEKLSDESAANFVMMQLKKMFPDATEPVQYLVSRWGTDPNTLGCYSYDVVGMPG--DLYERLRAPL--GNLFFG 432 (493)
Q Consensus 359 ~~~--~~~~~~~~e~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~l~~a 432 (493)
... .....+++|+++.+.++|++++.-...|....++-|.+ +.+.|. .++.. .......+.. .+|+++
T Consensus 393 ~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~---ciPqy~---vGh~~~le~a~~~l~~~~g~~l~l~ 466 (491)
T KOG1276|consen 393 GSTNTSLAVPSPEELVNAVTSALQKMLGISNKPVSVNVHLWKN---CIPQYT---VGHDDVLEAAKSMLTDSPGLGLFLG 466 (491)
T ss_pred ccccCcCCCCCHHHHHHHHHHHHHHHhCCCCCcccccceehhh---ccccee---cchHHHHHHHHHHHHhCCCCceEee
Confidence 433 23455889999999999999997666677666666653 223332 33321 2222333344 499999
Q ss_pred eccccCcCcchhHHHHHHHHHHHHHHH
Q 039105 433 GEAVSMEHQGSVHGAYSAGVMAAQNCQ 459 (493)
Q Consensus 433 Gd~~~~~~~g~~egA~~sg~~aa~~i~ 459 (493)
|.++.. -++..++++|+++|.+++
T Consensus 467 G~~y~G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 467 GNHYGG---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred ccccCC---CChhHHHHhhHHHHHhhc
Confidence 999542 488999999999998764
No 31
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=9.5e-25 Score=210.12 Aligned_cols=416 Identities=16% Similarity=0.120 Sum_probs=227.6
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCC-CCceeecccceeeCCCCCCchHHHHHHhCCceeee
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYS-FGCPVDMGASWLHGVCNENPLAPLIRRLGLTLYRT 107 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~ 107 (493)
++|+|+|||+|||+||++|+++|++|+|+|+++++||.++|++. +|...|+|.|.|+++ +.++++++++++.+....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~--Y~n~~~ll~~~~~~~~~~ 78 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGC--YYNLLTLLKELPIEDRLQ 78 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechh--HHHHHHHhhhCCchheee
Confidence 46999999999999999999999999999999999999999875 599999999999964 588999999999873322
Q ss_pred CCCCcccc-cCCcc--ceeeecCCCccccHHH-----------HHHHHHHHHHHHHH-HH-HhhhcCCCCCCHHHHHHHH
Q 039105 108 SGDNSVLY-DHDLE--SYALYDMDGNKVEKEM-----------AIKVGEIFKRILNE-TQ-KVRDEHTNDMSVLQAISIV 171 (493)
Q Consensus 108 ~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-~~-~~~~~~~~~~s~~~~~~~~ 171 (493)
-......+ ..+.. ...-+.....+.|... ..+......++... .. .......++.++.+|+.+.
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~~eld~~s~~d~l~~~ 158 (485)
T COG3349 79 LREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRREKIRFVLRLGDAPIGADRSLRELDKISFADWLKEK 158 (485)
T ss_pred hHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHHHHhHHhhccccccchhHHHHHHHhcccHHHHHHHh
Confidence 11111111 00000 0000000000000000 00000000011000 00 1112344667777877753
Q ss_pred HhcChhhhhhchHHHHHHHHHHHHH-hhhcCCcccccccccccc---cccc---CC-ccccccC-----hHHHHHHHh-h
Q 039105 172 LDRHPELRQEGLAYEVLQWYICRME-AWFAVDADMISLKCWDQE---QVLS---GG-HGLMVQG-----YDPVIKALS-K 237 (493)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~---~~~~---~g-~~~~~~G-----~~~l~~~L~-~ 237 (493)
+.........+.++. ......++..|...+... ..+. .. ...+.++ ..++.+.+. .
T Consensus 159 ----------g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~ 228 (485)
T COG3349 159 ----------GAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPER 228 (485)
T ss_pred ----------CCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhcccc
Confidence 222233333333322 233345556665544311 0111 11 1122222 245566665 4
Q ss_pred cCCccccceeEEEEecC---C--cEEEEEcCCcEE---EcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCcee
Q 039105 238 DIDIRLNQRVTKISNGC---N--KVMVTVEDGRNF---VADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNEN 309 (493)
Q Consensus 238 gv~i~~~~~V~~I~~~~---~--~v~V~~~~G~~~---~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 309 (493)
|.+++.+.+|..|..+. . .+.+... +... .++.|+.+...+.+.+....--+ +....+.+..++..+..
T Consensus 229 G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~--~~~~f~~ly~l~~~p~~ 305 (485)
T COG3349 229 GRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPSEWP--KWSNFDGLYGLRLVPVI 305 (485)
T ss_pred CceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhcCccccc--cccccccccccccccee
Confidence 88999999999998654 2 1344333 4433 44555555555555432211111 02233556677777888
Q ss_pred EEEEEcCCCCCCCCCcc--eee-----cCCCCceeeee------ccccCCCCcEEEEEecchhhHHhhcCCHHHHHHHHH
Q 039105 310 KIALRFDNVFWPNVELL--GVV-----APTSYACGYFL------NLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVM 376 (493)
Q Consensus 310 ~v~l~~~~~~~~~~~~~--g~~-----~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~ 376 (493)
++.+.|+...|.-.... +++ ..+.....+.+ .+..++....+-... .....+...+++++.....
T Consensus 306 ~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~--~~~~~~~~~~~~~~~a~~e 383 (485)
T COG3349 306 TLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVL--APGWPFLFESDEAIVATFE 383 (485)
T ss_pred EEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhh--cccccccccchhhHHHHHH
Confidence 89999885333211100 000 00110000000 111111111110000 0012345567788999999
Q ss_pred HHHHHhCCCCCCCcEEEEcccCCCCCCCccccCCCCCCChhHHHHhhCccCceEEeeccccCcCcchhHHHHHHHHHHHH
Q 039105 377 MQLKKMFPDATEPVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQGSVHGAYSAGVMAAQ 456 (493)
Q Consensus 377 ~~L~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGd~~~~~~~g~~egA~~sg~~aa~ 456 (493)
+.+...+|...... -|.+.....-+.....|+.. .++|...+|++|++++||++...+.++||+|..||++||+
T Consensus 384 ~~~~~~vP~~~~a~-----~~~~~i~~~q~~~~~~pgs~-~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~ 457 (485)
T COG3349 384 KELYELVPSLAEAK-----LKSSVLVNQQSLYGLAPGSY-HYRPEQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAAN 457 (485)
T ss_pred HHhhhcCCchhccc-----ccccceeccccccccCCCcc-ccCCCCCCCccchhhccceeecCCcCccchhhhhHHHHHH
Confidence 99998888654332 12221111112222234443 6778889999999999999998877899999999999999
Q ss_pred HHHHHHHhCCC
Q 039105 457 NCQKYLLKQPG 467 (493)
Q Consensus 457 ~i~~~l~~~~~ 467 (493)
.|++.+...-+
T Consensus 458 ~v~~~~~~~~~ 468 (485)
T COG3349 458 AILDNLGHHAP 468 (485)
T ss_pred HHHHhhhhcCc
Confidence 99998886665
No 32
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.88 E-value=7.9e-21 Score=176.89 Aligned_cols=238 Identities=19% Similarity=0.158 Sum_probs=132.3
Q ss_pred ccCCccccccChHHHHHHHhh-----cCCccccceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecChhhhhcCcccccC
Q 039105 217 LSGGHGLMVQGYDPVIKALSK-----DIDIRLNQRVTKISNGCNK-VMVTVEDGRNFVADAAIVTVPLGILKANLIQFEP 290 (493)
Q Consensus 217 ~~~g~~~~~~G~~~l~~~L~~-----gv~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~a~~~~~l~~~~~~~~~ 290 (493)
..++..|+.+|+.++.+++++ |.+|.+++.|++|..++++ +.|...+|+++++..||+++.+..+-..++. ..
T Consensus 252 ~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp-~e 330 (561)
T KOG4254|consen 252 HKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLP-GE 330 (561)
T ss_pred cCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCC-Cc
Confidence 456788999999999998875 7799999999999998876 5799999999999999999987765422222 12
Q ss_pred CCcHHHHHHHhhcCCCc-ee----EEEEEcCC----CCC---------CC----------CCcceeecCCCCce----ee
Q 039105 291 KLPEWKLSAIADIGVGN-EN----KIALRFDN----VFW---------PN----------VELLGVVAPTSYAC----GY 338 (493)
Q Consensus 291 ~l~~~~~~~~~~~~~~~-~~----~v~l~~~~----~~~---------~~----------~~~~g~~~~~~~~~----~~ 338 (493)
.||.+. .++++.+.. .. ..++.... +.- .+ +..-|.-.+..... +.
T Consensus 331 ~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~ 408 (561)
T KOG4254|consen 331 ALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSS 408 (561)
T ss_pred cCCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecccc
Confidence 345442 222322111 11 12232110 000 00 00001101111000 12
Q ss_pred eeccccCCCCcEEEEEecchhhHHhhc-------CCHHHHHHHHHHHHHHhCCCCCCCcEEEE-------cccCC---CC
Q 039105 339 FLNLHKATGHPVLVYMAAGRFAYDLEK-------LSDESAANFVMMQLKKMFPDATEPVQYLV-------SRWGT---DP 401 (493)
Q Consensus 339 ~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~e~~~~~~~~L~~~~p~~~~~~~~~~-------~~w~~---~~ 401 (493)
.++.-.|.+++++..++.... .+|.. .-+++..+++++.+++++|++..-+..+. .+... ..
T Consensus 409 lDptlappg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~qr~l~~~~Gn 487 (561)
T KOG4254|consen 409 LDPTLAPPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTHQRFLGRPGGN 487 (561)
T ss_pred cCCCcCCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchhhHHhcCCCCc
Confidence 222334667777766665433 23322 23467899999999999999765433221 11110 01
Q ss_pred CCCccccCCC--CCCChhHHHHhhCccCceEEeeccccCcCcchhHHHHHHHHHHHHHHHHHH
Q 039105 402 NTLGCYSYDV--VGMPGDLYERLRAPLGNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQKYL 462 (493)
Q Consensus 402 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~aGd~~~~~~~g~~egA~~sg~~aa~~i~~~l 462 (493)
+..++...++ ....-......++|++|||+|||.+.++ |++-+|- |..+|+..+...
T Consensus 488 ~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~~ 546 (561)
T KOG4254|consen 488 IFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILDR 546 (561)
T ss_pred ccCcccccccccccCCccccccCCCCCCceEEecCCCCCC--CCccccc--hhHHHHHHhhhh
Confidence 1111111111 0111112234589999999999998763 3444433 888888666553
No 33
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.80 E-value=1e-17 Score=161.32 Aligned_cols=229 Identities=17% Similarity=0.174 Sum_probs=139.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCCCce-eecccceeeCCCCCCchHHHHHHhCC-cee
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSFGCP-VDMGASWLHGVCNENPLAPLIRRLGL-TLY 105 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~~~~~~~l~~~lg~-~~~ 105 (493)
++||+|||||++||++|++|++.|.+|+|+|+++++||.|.+....|.. .+.|+|+++. ....+.+++.++.- ...
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t--~~~~v~~~~~~~~~~~~~ 78 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHT--NNQYVWDYISPFFELNNY 78 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEec--CcHHHHHHHHhhccccce
Confidence 4799999999999999999999999999999999999999887666654 4899999883 45567777776531 111
Q ss_pred eeCCCCcccccCCccceeeecCCCccccHHHHHH-----HHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHhcChhhhh
Q 039105 106 RTSGDNSVLYDHDLESYALYDMDGNKVEKEMAIK-----VGEIFKRILNETQKVRDEHTNDMSVLQAISIVLDRHPELRQ 180 (493)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 180 (493)
..+....+.+....+ ++....... ....+..++...... .......++.++.... .
T Consensus 79 --~~~~~~~~~g~~~~~--------P~~~~~i~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~e~~d~~--------~ 139 (377)
T TIGR00031 79 --QHRVLALYNNLDLTL--------PFNFNQFRKLLGVKDAQELQNFFNAQFKY-GDHVPLEELQEIADPD--------I 139 (377)
T ss_pred --eEEEEEEECCeEEcc--------CCCHHHHHHhcccchHHHHHHHHHHHhhc-ccCCCCCCHHHHHHHH--------H
Confidence 111111222211111 111111111 111111111111000 0011113344443211 2
Q ss_pred hchHHHHHHHHHHHH-HhhhcCCccccccccccc---cc-----cc-cCCccccccChHHHHHHHhh--cCCccccceeE
Q 039105 181 EGLAYEVLQWYICRM-EAWFAVDADMISLKCWDQ---EQ-----VL-SGGHGLMVQGYDPVIKALSK--DIDIRLNQRVT 248 (493)
Q Consensus 181 ~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~---~~-----~~-~~g~~~~~~G~~~l~~~L~~--gv~i~~~~~V~ 248 (493)
..+++.+.+.++.+. ...|+.++++++..+... .. .+ ..-.++|++|+.++.++|.+ +++|++|+.+.
T Consensus 140 ~~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~~~i~v~l~~~~~ 219 (377)
T TIGR00031 140 QLLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKMLDHPLIDVKLNCHIN 219 (377)
T ss_pred HHHHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccHHHHHHHHHhcCCCEEEeCCccc
Confidence 357888888888875 458899999998775441 11 11 11246899999999999996 49999999888
Q ss_pred EEEecCCcEEEEEcCCcEEEcCEEEEecChhhh
Q 039105 249 KISNGCNKVMVTVEDGRNFVADAAIVTVPLGIL 281 (493)
Q Consensus 249 ~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l 281 (493)
.+...++++.+. .+ .+. +.||.|.|++.+
T Consensus 220 ~~~~~~~~~~~~--~~-~~~-~~vi~Tg~id~~ 248 (377)
T TIGR00031 220 LLKDKDSQLHFA--NK-AIR-KPVIYTGLIDQL 248 (377)
T ss_pred eeeccccceeec--cc-ccc-CcEEEecCchHH
Confidence 777655445442 23 233 889999887774
No 34
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.78 E-value=3.9e-18 Score=168.20 Aligned_cols=231 Identities=16% Similarity=0.147 Sum_probs=138.8
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCCC--------------------ceeeccccee
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSFG--------------------CPVDMGASWL 84 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g--------------------~~~d~G~~~~ 84 (493)
|.+.+||+|||+|++|+.+|..|+++|++|+++|+++..||+.+|....+ +.+|..++.+
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l 80 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFI 80 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeee
Confidence 46789999999999999999999999999999999999999999864322 2344555555
Q ss_pred eCCCCCCchHHHHHHhCCcee--eeCCCCcccc-cCCccceeeecCCCccccHHHHHHH---------HHHHHHHHHHHH
Q 039105 85 HGVCNENPLAPLIRRLGLTLY--RTSGDNSVLY-DHDLESYALYDMDGNKVEKEMAIKV---------GEIFKRILNETQ 152 (493)
Q Consensus 85 ~~~~~~~~~~~l~~~lg~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 152 (493)
. ....+.+++.+.++.-. .......+++ .++ ....+|.+..+.+ +..+.+|+....
T Consensus 81 ~---~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g---------~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~ 148 (443)
T PTZ00363 81 M---ASGELVKILLHTDVTRYLEFKVIDGSYVYQKEG---------KIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVS 148 (443)
T ss_pred e---cCChHHHHHhhcCccceeeeEEeceEEEEecCC---------eEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHH
Confidence 3 34667788888887632 1111222222 111 1111222111111 223444444443
Q ss_pred HhhhcC--------CCCCCHHHHHHHHHhcChhhhhhchHHHHHHHHHHHHHhh----hcCCccccccccc---cc--cc
Q 039105 153 KVRDEH--------TNDMSVLQAISIVLDRHPELRQEGLAYEVLQWYICRMEAW----FAVDADMISLKCW---DQ--EQ 215 (493)
Q Consensus 153 ~~~~~~--------~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~---~~--~~ 215 (493)
...... .+..++.++++.+ ++++...+.+...+... +...+...++... .. ..
T Consensus 149 ~~~~~~~~~~~~~~~d~~T~~d~L~~~----------~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~ 218 (443)
T PTZ00363 149 NYDENDPETHKGLNLKTMTMAQLYKKF----------GLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSR 218 (443)
T ss_pred hhccCChhhhcccCcccCCHHHHHHHh----------CCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhh
Confidence 333221 2345677776553 44444444322222211 1111111111110 00 00
Q ss_pred cccCCccccccChHHHHHHHhh-----cCCccccceeEEEEecCC-c-EEEEEcCCcEEEcCEEEEecC
Q 039105 216 VLSGGHGLMVQGYDPVIKALSK-----DIDIRLNQRVTKISNGCN-K-VMVTVEDGRNFVADAAIVTVP 277 (493)
Q Consensus 216 ~~~~g~~~~~~G~~~l~~~L~~-----gv~i~~~~~V~~I~~~~~-~-v~V~~~~G~~~~ad~VI~a~~ 277 (493)
....+..++.+|++.|+++|.+ |++++++++|++|..+++ + +.|++.+|++++|+.||+..+
T Consensus 219 ~g~~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 219 YGKSPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred ccCCcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 1122346788999999999863 889999999999988753 4 578999999999999999654
No 35
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.76 E-value=3.8e-17 Score=152.27 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=51.1
Q ss_pred CCccccc-cChHHHHHHHhh-----cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecC
Q 039105 219 GGHGLMV-QGYDPVIKALSK-----DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVP 277 (493)
Q Consensus 219 ~g~~~~~-~G~~~l~~~L~~-----gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~ 277 (493)
.|..+|. +..++|+++|.. ||+|+++++|.+|+.++.++.+.+++|++++||.+|+|++
T Consensus 100 ~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 100 LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 4445666 777888888753 8999999999999999988999999998999999999996
No 36
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.70 E-value=1.7e-17 Score=118.73 Aligned_cols=68 Identities=41% Similarity=0.601 Sum_probs=61.2
Q ss_pred EECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHh
Q 039105 33 VIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRL 100 (493)
Q Consensus 33 IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~l 100 (493)
|||||++||+||+.|+++|++|+|+|+++++||++++...+|+.+|.|+++++....+.++.+++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 89999999999999999999999999999999999998889999999999998755567889998875
No 37
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.69 E-value=1.7e-15 Score=150.75 Aligned_cols=74 Identities=24% Similarity=0.242 Sum_probs=61.5
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhC----CCcEEEEeeCCCCCceeeccC--CCCceeecccceeeCCCCCCchHHHHH
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDA----SFKVVLLESRDRLGGRIHTDY--SFGCPVDMGASWLHGVCNENPLAPLIR 98 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~----G~~V~v~E~~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~~~l~~ 98 (493)
..+..+|+|||||+|||+||++|++. |.+|+|+|+++.+||++.+.. .+|+.++.|.+. . .....+.++++
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~-~--~~y~~l~~ll~ 95 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM-E--NHFECLWDLFR 95 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc-c--chHHHHHHHHH
Confidence 34568999999999999999999995 689999999999999998744 578999888664 2 34567888888
Q ss_pred HhC
Q 039105 99 RLG 101 (493)
Q Consensus 99 ~lg 101 (493)
.+.
T Consensus 96 ~ip 98 (576)
T PRK13977 96 SIP 98 (576)
T ss_pred hcc
Confidence 773
No 38
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.60 E-value=2.6e-13 Score=134.75 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=41.9
Q ss_pred HHHHHh-hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhh
Q 039105 231 VIKALS-KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGI 280 (493)
Q Consensus 231 l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~ 280 (493)
+.+++. .|++++++++|++|+.+++++.|++++|+++++|.||.|.+...
T Consensus 119 L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 119 LWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 444443 37899999999999988888888888888999999999998655
No 39
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.58 E-value=4e-13 Score=133.26 Aligned_cols=52 Identities=15% Similarity=0.230 Sum_probs=42.5
Q ss_pred HHHHHHhh-c-CCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhh
Q 039105 230 PVIKALSK-D-IDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGIL 281 (493)
Q Consensus 230 ~l~~~L~~-g-v~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l 281 (493)
.+.+.+.+ | ++++++++|++|+.+++++.|++++|+++++|.||.|.+....
T Consensus 111 ~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 111 ALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH
Confidence 34444433 4 8999999999999888888898899989999999999986653
No 40
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.55 E-value=1.7e-12 Score=129.45 Aligned_cols=54 Identities=19% Similarity=0.310 Sum_probs=44.1
Q ss_pred HHHHHHhh-cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 039105 230 PVIKALSK-DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKA 283 (493)
Q Consensus 230 ~l~~~L~~-gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~ 283 (493)
.+.+.+.+ |++++.+++|++|+.+++++.|++.+|++++||.||.|.+.+...+
T Consensus 117 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR 171 (405)
T PRK05714 117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAVR 171 (405)
T ss_pred HHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchhH
Confidence 34444443 7899999999999988888889888998899999999998776543
No 41
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.55 E-value=7.5e-13 Score=132.59 Aligned_cols=39 Identities=31% Similarity=0.509 Sum_probs=35.8
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCC
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRL 63 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~ 63 (493)
++..+||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 556799999999999999999999999999999998754
No 42
>PRK09126 hypothetical protein; Provisional
Probab=99.54 E-value=9.6e-13 Score=130.78 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=42.6
Q ss_pred HHHHHh--hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhh
Q 039105 231 VIKALS--KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGIL 281 (493)
Q Consensus 231 l~~~L~--~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l 281 (493)
+.+.+. .|++|+++++|++++.+++.+.|.+++|+++++|.||.|.+....
T Consensus 116 l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 116 AYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred HHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 445543 388999999999999888888888889989999999999987654
No 43
>PRK08013 oxidoreductase; Provisional
Probab=99.53 E-value=3.2e-12 Score=127.05 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=44.1
Q ss_pred HHHHHhh--cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 039105 231 VIKALSK--DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKA 283 (493)
Q Consensus 231 l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~ 283 (493)
+.+++.+ +++++++++|++|+.+++.+.|++.+|++++||.||-|.+.+...+
T Consensus 117 L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR 171 (400)
T PRK08013 117 LWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSWLR 171 (400)
T ss_pred HHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcHHH
Confidence 4454443 6899999999999988888888888999999999999999776543
No 44
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.53 E-value=1.6e-12 Score=129.54 Aligned_cols=52 Identities=13% Similarity=0.299 Sum_probs=43.4
Q ss_pred HHHHHHhh--cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhh
Q 039105 230 PVIKALSK--DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGIL 281 (493)
Q Consensus 230 ~l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l 281 (493)
.+.+++.+ +++++++++|++|+.+++.+.|++.+|++++||.||.|.+.+..
T Consensus 116 ~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 116 ALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 34455443 68999999999999888888899999999999999999997664
No 45
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.52 E-value=3.3e-12 Score=126.53 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=43.2
Q ss_pred HHHHHHhh--cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhh
Q 039105 230 PVIKALSK--DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGI 280 (493)
Q Consensus 230 ~l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~ 280 (493)
.+.+.+.+ |++++++++|++|+.++++++|++.+|++++||.||.|.+.+.
T Consensus 110 ~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 110 ALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 35555554 7899999999999988888889888898899999999999765
No 46
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.51 E-value=2.9e-12 Score=127.17 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=40.9
Q ss_pred HHHHHHhh-c-CCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhh
Q 039105 230 PVIKALSK-D-IDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGIL 281 (493)
Q Consensus 230 ~l~~~L~~-g-v~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l 281 (493)
.+.+++.+ | ++++ +++|++|+.+++.+.|++.+|++++||.||.|.+....
T Consensus 116 ~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 116 ALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSW 168 (388)
T ss_pred HHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCch
Confidence 34455543 5 7788 99999998888888899888888999999999987653
No 47
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.51 E-value=3.5e-12 Score=126.36 Aligned_cols=42 Identities=31% Similarity=0.450 Sum_probs=38.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
.++||+|||||+||++||+.|+++|++|+|+|+++.+|-...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~ 43 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPC 43 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCcc
Confidence 579999999999999999999999999999999999986643
No 48
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.50 E-value=9.8e-13 Score=129.03 Aligned_cols=44 Identities=25% Similarity=0.315 Sum_probs=36.9
Q ss_pred hcCCccccceeEEEEecCCcEE-EEEcCCcEEEcCEEEEecChhhh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVM-VTVEDGRNFVADAAIVTVPLGIL 281 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~a~~~~~l 281 (493)
.|++|+.+++|++|..+++++. |.+++|+ ++||.||+|+++...
T Consensus 160 ~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 160 AGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSP 204 (358)
T ss_dssp TT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHH
T ss_pred hhhhccccccccchhhcccccccccccccc-cccceeEecccccce
Confidence 3899999999999999999987 9999996 999999999987653
No 49
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.50 E-value=6.1e-12 Score=125.67 Aligned_cols=40 Identities=25% Similarity=0.518 Sum_probs=37.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
+++||+|||||+||++||+.|+++|++|+|+|+.+.+|..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 4699999999999999999999999999999998887754
No 50
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.49 E-value=4.7e-12 Score=126.37 Aligned_cols=51 Identities=24% Similarity=0.197 Sum_probs=42.3
Q ss_pred HHHHHhh-cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhh
Q 039105 231 VIKALSK-DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGIL 281 (493)
Q Consensus 231 l~~~L~~-gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l 281 (493)
+.+.+.+ |++++++++|++|+.+++.+.|++.+|+++++|.||.|.+....
T Consensus 117 L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 117 LRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence 4444433 88999999999999888888888889989999999999986553
No 51
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.49 E-value=4.4e-12 Score=125.40 Aligned_cols=203 Identities=14% Similarity=0.100 Sum_probs=105.0
Q ss_pred HHHHHHhh-c-CCccccceeEEEEecCCcEEEEEc-CCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCC
Q 039105 230 PVIKALSK-D-IDIRLNQRVTKISNGCNKVMVTVE-DGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVG 306 (493)
Q Consensus 230 ~l~~~L~~-g-v~i~~~~~V~~I~~~~~~v~V~~~-~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 306 (493)
.|.+++.+ + ++++.+++|+.++.+++.+.++.+ +|++++||.||-|-+.+...+.... .... ....|.
T Consensus 109 ~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~-~~~~--------~~~~y~ 179 (387)
T COG0654 109 ALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAG-IAEF--------SGRDYG 179 (387)
T ss_pred HHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHHHHhcC-CCCc--------cCCCCC
Confidence 34555543 3 799999999999999988888888 9999999999999997776542222 0110 111222
Q ss_pred ceeEEEEEcCCCCCCCCCcceeecCCCCceeeeeccccCCCCcEEEEEecchhhHHhhcCCHHHHHHHHHHHHHHhCCCC
Q 039105 307 NENKIALRFDNVFWPNVELLGVVAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDA 386 (493)
Q Consensus 307 ~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~ 386 (493)
... +...................+.. ....++ .++....+.++............++++. ...|.+.+|..
T Consensus 180 ~~~-l~~~~~~~~~~~~~~~~~~~~~~-~~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~ 250 (387)
T COG0654 180 QTA-LVANVEPEEPHEGRAGERFTHAG-PFALLP---LPDNRSSVVWSLPPGPAEDLQGLSDEEF----LRELQRRLGER 250 (387)
T ss_pred ceE-EEEEeecCCCCCCeEEEEecCCC-ceEEEe---cCCCceeEEEECChhhHHHHhcCCHHHH----HHHHHHhcCcc
Confidence 221 22222221111111111122211 111111 1113344444444444555666777766 44566666653
Q ss_pred CCCcEEEEcccCCCCCCCccccCCCCCCChhHHHHhhCccCceEEeeccccCcCcc---hhHHHHHHHHHHHHHHHHHHH
Q 039105 387 TEPVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQG---SVHGAYSAGVMAAQNCQKYLL 463 (493)
Q Consensus 387 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGd~~~~~~~g---~~egA~~sg~~aa~~i~~~l~ 463 (493)
..........+.. .+ |-.. .....+ -.+++.++||..+..+|- +++-|+.-+...|..+.....
T Consensus 251 ~~~~~~~~~~~~~------~~----pl~~-~~a~~~--~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~ 317 (387)
T COG0654 251 DPLGRVTLVSSRS------AF----PLSL-RVAERY--RRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPR 317 (387)
T ss_pred cccceEEEccccc------cc----cccc-hhhhhe--ecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 2111111111110 01 0000 011111 137899999999985553 555577777777777776655
No 52
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.49 E-value=9.7e-12 Score=123.77 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=41.9
Q ss_pred HHHHHhh--cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhh
Q 039105 231 VIKALSK--DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGI 280 (493)
Q Consensus 231 l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~ 280 (493)
+.+.+.+ |++++++++|++|+.+++++.|++.+|.++++|.||.|.+...
T Consensus 118 l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 118 LFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 4444443 6899999999999988888889988888899999999998665
No 53
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.49 E-value=5.9e-12 Score=125.08 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=43.0
Q ss_pred HHHHHHhh--cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhh
Q 039105 230 PVIKALSK--DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGIL 281 (493)
Q Consensus 230 ~l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l 281 (493)
.+.+++.+ |++++++++|++++.+++++.|++.+|++++||.||.|.+....
T Consensus 117 ~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 117 ALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence 34454442 78999999999999888888888888989999999999987664
No 54
>PRK07588 hypothetical protein; Provisional
Probab=99.48 E-value=3.4e-12 Score=126.68 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=43.9
Q ss_pred HHHHhhcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 039105 232 IKALSKDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKA 283 (493)
Q Consensus 232 ~~~L~~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~ 283 (493)
.+++..+++|+++++|++|+.+++++.|++++|+++++|.||.|.+.+...+
T Consensus 110 ~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~vR 161 (391)
T PRK07588 110 YTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHVR 161 (391)
T ss_pred HHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccch
Confidence 3444456899999999999998888999999999999999999999777544
No 55
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.47 E-value=5.1e-12 Score=125.37 Aligned_cols=196 Identities=13% Similarity=0.086 Sum_probs=98.2
Q ss_pred HHHHHHhh-cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCce
Q 039105 230 PVIKALSK-DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNE 308 (493)
Q Consensus 230 ~l~~~L~~-gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 308 (493)
.+.+++.+ +...+++++|++++.+++++.|++++|+++++|.||.|.+.....+..+... . ....|...
T Consensus 116 ~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~--~--------~~~~~~~~ 185 (388)
T PRK07494 116 ALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSPVREAAGIG--V--------RTWSYPQK 185 (388)
T ss_pred HHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCchhHHhcCCC--c--------eecCCCCE
Confidence 34444443 3334889999999988888889988998999999999998765322111111 0 00112111
Q ss_pred eEEEEEcCCCCCCCCCcce-eecCCCCceeeeeccccCCCCcEEEEEecchhhHHhhcCCHHHHHHHHHHHHHHhCCCCC
Q 039105 309 NKIALRFDNVFWPNVELLG-VVAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDAT 387 (493)
Q Consensus 309 ~~v~l~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~~ 387 (493)
.+...+..+. +...... +..+.. ....+ .-+++...++..........+...+++++.+.+.+.+.+.++...
T Consensus 186 -~~~~~v~~~~-~~~~~~~~~~~~~g-~~~~~---Pl~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 259 (388)
T PRK07494 186 -ALVLNFTHSR-PHQNVSTEFHTEGG-PFTQV---PLPGRRSSLVWVVRPAEAERLLALSDAALSAAIEERMQSMLGKLT 259 (388)
T ss_pred -EEEEEEeccC-CCCCEEEEEeCCCC-cEEEE---ECCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCCeE
Confidence 1222222111 1111100 111111 11111 112333334444344334445666777777777666665554321
Q ss_pred CCcEEEEcccCCCCCCCccccCCCCCCChhHHHHhhCccCceEEeeccccCcCcc---hhHHHHHHHHHHHHHHHH
Q 039105 388 EPVQYLVSRWGTDPNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQG---SVHGAYSAGVMAAQNCQK 460 (493)
Q Consensus 388 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGd~~~~~~~g---~~egA~~sg~~aa~~i~~ 460 (493)
... ....|. -.. ...+.+ ..+++.++||..+...|- ++.-|+..+...|+.+..
T Consensus 260 ~~~--~~~~~~--------------l~~-~~~~~~--~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~ 316 (388)
T PRK07494 260 LEP--GRQAWP--------------LSG-QVAHRF--AAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVED 316 (388)
T ss_pred Ecc--CCcEee--------------chH-HHHHhh--ccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHh
Confidence 000 001111 000 001112 137999999998885553 566677777777776654
No 56
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.47 E-value=2.5e-11 Score=120.11 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=42.7
Q ss_pred ccccChHHHHHHHh-hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChh
Q 039105 223 LMVQGYDPVIKALS-KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLG 279 (493)
Q Consensus 223 ~~~~G~~~l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~ 279 (493)
.+..-...+.+.+. .|++++.+++|++|+.+++++.|.+.+| ++++|.||+|++..
T Consensus 143 ~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 143 YAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred cHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence 33333444544433 4889999999999998888888888777 79999999999864
No 57
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.47 E-value=3.9e-11 Score=119.94 Aligned_cols=40 Identities=23% Similarity=0.453 Sum_probs=35.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCcee
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRI 67 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~ 67 (493)
|+||+|||||++|+++|++|+++|++|+|+||++.+|+.+
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~a 40 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMET 40 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCc
Confidence 3799999999999999999999999999999987666433
No 58
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.1e-12 Score=111.84 Aligned_cols=68 Identities=28% Similarity=0.464 Sum_probs=56.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhCCce
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTL 104 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (493)
...||+|||||+|||+|||+|+++|.+|+|||++..+||-++ .|++.|+..--..+..++|+++|++.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w----------~GGmlf~~iVv~~~a~~iL~e~gI~y 96 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW----------GGGMLFNKIVVREEADEILDEFGIRY 96 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc----------ccccccceeeecchHHHHHHHhCCcc
Confidence 568999999999999999999999999999999999998765 24444443334567788999999873
No 59
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.46 E-value=5.7e-11 Score=117.42 Aligned_cols=52 Identities=21% Similarity=0.308 Sum_probs=42.0
Q ss_pred hHHHHHHHh-hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhh
Q 039105 228 YDPVIKALS-KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGI 280 (493)
Q Consensus 228 ~~~l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~ 280 (493)
...+.+.+. .|++++++++|++|+.+++++.|.+++| ++++|.||+|++...
T Consensus 152 ~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 152 IKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence 344444433 5899999999999999888888888888 799999999998654
No 60
>PRK06847 hypothetical protein; Provisional
Probab=99.45 E-value=1.5e-11 Score=121.46 Aligned_cols=45 Identities=29% Similarity=0.230 Sum_probs=39.9
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGIL 281 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l 281 (493)
.|++|+++++|++|+.+++++.|.+.+|+++++|.||.|++....
T Consensus 120 ~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 120 AGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred hCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence 378999999999999888888888889989999999999987653
No 61
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.44 E-value=1.9e-11 Score=120.92 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=44.1
Q ss_pred HHHHHhh--cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 039105 231 VIKALSK--DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKA 283 (493)
Q Consensus 231 l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~ 283 (493)
+.+++.+ +++++++++|++++.+++++.|++++|+++++|.||.|.+.+...+
T Consensus 116 L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~vR 170 (384)
T PRK08849 116 LWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQVR 170 (384)
T ss_pred HHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchhH
Confidence 4444433 6899999999999998888999999999999999999998777543
No 62
>PRK07045 putative monooxygenase; Reviewed
Probab=99.44 E-value=2.3e-11 Score=120.59 Aligned_cols=53 Identities=13% Similarity=0.283 Sum_probs=41.5
Q ss_pred HHHHHh--hcCCccccceeEEEEecCCc--EEEEEcCCcEEEcCEEEEecChhhhhc
Q 039105 231 VIKALS--KDIDIRLNQRVTKISNGCNK--VMVTVEDGRNFVADAAIVTVPLGILKA 283 (493)
Q Consensus 231 l~~~L~--~gv~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VI~a~~~~~l~~ 283 (493)
+.+.+. .|++++++++|++|+.++++ +.|++.+|+++++|.||.|.+.....+
T Consensus 112 L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR 168 (388)
T PRK07045 112 LLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIR 168 (388)
T ss_pred HHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHH
Confidence 444443 26899999999999986554 368888999999999999998776544
No 63
>PRK05868 hypothetical protein; Validated
Probab=99.44 E-value=4.5e-11 Score=117.37 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=42.8
Q ss_pred HhhcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 039105 235 LSKDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKA 283 (493)
Q Consensus 235 L~~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~ 283 (493)
+..|++++++++|++|+.++++++|++++|++++||.||-|.+.+...+
T Consensus 115 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~vR 163 (372)
T PRK05868 115 TQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVR 163 (372)
T ss_pred ccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchHH
Confidence 3458899999999999988888999999999999999999999777544
No 64
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.43 E-value=2.5e-11 Score=115.75 Aligned_cols=37 Identities=35% Similarity=0.456 Sum_probs=34.4
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCc
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGG 65 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG 65 (493)
+||+|||||++||++|+.|++.|.+|+|+|++..++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 6999999999999999999999999999999877654
No 65
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.43 E-value=2.5e-12 Score=124.45 Aligned_cols=198 Identities=21% Similarity=0.239 Sum_probs=107.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCC--CcEEEEeeCCCCCceeeccCCCCceeecccceeeCC-------CCCCchHHHH
Q 039105 27 SLPSVIVIGGGISGLAAARILYDAS--FKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGV-------CNENPLAPLI 97 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G--~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~-------~~~~~~~~l~ 97 (493)
+++||+|||||+.|+++|+.|++.+ ++|+|+||.+.+|...++ ..-.+++.|..+-++. ..+....+++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~--~NSgviHag~~y~p~slka~l~~~g~~~~~~~~ 79 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSS--NNSGVIHAGLYYTPGSLKAKLCVAGNINEFAIC 79 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccccccc--CcccceeccccCCCcchhhHHHHHHHHHHHHHH
Confidence 5799999999999999999999997 999999999999877655 2223344443222210 0012346777
Q ss_pred HHhCCceeeeCCCCcccccCCccceeeecCCCccccHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHhcChh
Q 039105 98 RRLGLTLYRTSGDNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRILNETQKVRDEHTNDMSVLQAISIVLDRHPE 177 (493)
Q Consensus 98 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 177 (493)
++++++.... +...+.++ .+....+...++++.. ....+.
T Consensus 80 kq~~~~f~~~-g~l~vA~~-----------------e~e~~~L~~l~~~~~~-------ngv~~~--------------- 119 (429)
T COG0579 80 KQLGIPFINC-GKLSVATG-----------------EEEVERLEKLYERGKA-------NGVFDL--------------- 119 (429)
T ss_pred HHhCCccccc-CeEEEEEC-----------------hHHHHHHHHHHHHHhh-------CCCcce---------------
Confidence 7777664332 22111111 1111222222222111 100000
Q ss_pred hhhhchHH-HHHHHHHHHHHhhhcCCccccccccccccccccCCccccccChHHHHHHH-hhcCCccccceeEEEEecCC
Q 039105 178 LRQEGLAY-EVLQWYICRMEAWFAVDADMISLKCWDQEQVLSGGHGLMVQGYDPVIKAL-SKDIDIRLNQRVTKISNGCN 255 (493)
Q Consensus 178 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g~~~~~~G~~~l~~~L-~~gv~i~~~~~V~~I~~~~~ 255 (493)
..++. ++.++ .|... -..........++..-+..-+.++++.+ ++|+++++|++|+.|++.++
T Consensus 120 ---~~ld~~~i~~~-----------eP~l~-~~~~aal~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d 184 (429)
T COG0579 120 ---EILDKEEIKEL-----------EPLLN-EGAVAALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSD 184 (429)
T ss_pred ---eecCHHHHHhh-----------Ccccc-ccceeeEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCC
Confidence 00111 11110 00000 0000000011111122222234455543 35899999999999999877
Q ss_pred c-EEEEEcCCcE-EEcCEEEEecChhhh
Q 039105 256 K-VMVTVEDGRN-FVADAAIVTVPLGIL 281 (493)
Q Consensus 256 ~-v~V~~~~G~~-~~ad~VI~a~~~~~l 281 (493)
+ ..+.+.+|++ ++|+.||.|++....
T Consensus 185 g~~~~~~~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 185 GVFVLNTSNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred ceEEEEecCCcEEEEeeEEEECCchhHH
Confidence 4 5677888876 999999999987764
No 66
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.43 E-value=1.2e-12 Score=128.05 Aligned_cols=39 Identities=41% Similarity=0.661 Sum_probs=29.9
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCcee
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRI 67 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~ 67 (493)
|||+|||||+|||+||+.|++.|.+|+|+|+++++|-++
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKi 39 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKI 39 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccce
Confidence 799999999999999999999999999999999997443
No 67
>PRK06184 hypothetical protein; Provisional
Probab=99.42 E-value=1.8e-11 Score=125.31 Aligned_cols=53 Identities=8% Similarity=0.025 Sum_probs=41.7
Q ss_pred HHHHHhh-cCCccccceeEEEEecCCcEEEEE---cCCcEEEcCEEEEecChhhhhc
Q 039105 231 VIKALSK-DIDIRLNQRVTKISNGCNKVMVTV---EDGRNFVADAAIVTVPLGILKA 283 (493)
Q Consensus 231 l~~~L~~-gv~i~~~~~V~~I~~~~~~v~V~~---~~G~~~~ad~VI~a~~~~~l~~ 283 (493)
+.+.+.+ |++|+++++|++|+.+++++.++. .++++++||+||.|.+.+...+
T Consensus 115 L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR 171 (502)
T PRK06184 115 LRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFVR 171 (502)
T ss_pred HHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHH
Confidence 3444433 789999999999998888877765 5667899999999999877543
No 68
>PRK10015 oxidoreductase; Provisional
Probab=99.41 E-value=3.6e-11 Score=119.97 Aligned_cols=39 Identities=31% Similarity=0.510 Sum_probs=36.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCc
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGG 65 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG 65 (493)
+++||+|||||+||++||+.|+++|++|+|+|+.+.+|-
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~ 42 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC 42 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 469999999999999999999999999999999887763
No 69
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.40 E-value=5.8e-11 Score=119.30 Aligned_cols=54 Identities=17% Similarity=0.157 Sum_probs=42.2
Q ss_pred HHHHHHhh----cCCccccceeEEEEec-------CCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 039105 230 PVIKALSK----DIDIRLNQRVTKISNG-------CNKVMVTVEDGRNFVADAAIVTVPLGILKA 283 (493)
Q Consensus 230 ~l~~~L~~----gv~i~~~~~V~~I~~~-------~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~ 283 (493)
.+.+.+.+ +++++++++|++|+.+ +++++|++.+|++++||.||.|.+.+...+
T Consensus 122 ~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 122 SLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred HHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhH
Confidence 34555543 3789999999999752 356889899999999999999998877544
No 70
>PRK06185 hypothetical protein; Provisional
Probab=99.39 E-value=6.4e-11 Score=118.31 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=34.8
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
+.+++||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 34679999999999999999999999999999999753
No 71
>PRK08244 hypothetical protein; Provisional
Probab=99.39 E-value=5.1e-11 Score=121.83 Aligned_cols=36 Identities=36% Similarity=0.401 Sum_probs=33.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRL 63 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~ 63 (493)
++||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 489999999999999999999999999999997643
No 72
>PRK06834 hypothetical protein; Provisional
Probab=99.39 E-value=1.2e-10 Score=118.08 Aligned_cols=45 Identities=22% Similarity=0.155 Sum_probs=40.2
Q ss_pred cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhh
Q 039105 238 DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILK 282 (493)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~ 282 (493)
|++|+++++|++|+.+++++.|++.+|+++++|+||.|.+.....
T Consensus 114 gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 114 GVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred CCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 789999999999999888888888888889999999999876643
No 73
>PRK07190 hypothetical protein; Provisional
Probab=99.38 E-value=1.1e-10 Score=118.16 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=40.9
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKA 283 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~ 283 (493)
.|++++++++|++|+.+++++.+.+.+|++++|++||.|.+.+...+
T Consensus 122 ~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~vR 168 (487)
T PRK07190 122 AGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSFVR 168 (487)
T ss_pred CCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHHHH
Confidence 38999999999999998888888888888999999999999776543
No 74
>PRK11445 putative oxidoreductase; Provisional
Probab=99.38 E-value=1.7e-10 Score=112.53 Aligned_cols=47 Identities=15% Similarity=0.134 Sum_probs=38.3
Q ss_pred HhhcCCccccceeEEEEecCCcEEEEE-cCCc--EEEcCEEEEecChhhh
Q 039105 235 LSKDIDIRLNQRVTKISNGCNKVMVTV-EDGR--NFVADAAIVTVPLGIL 281 (493)
Q Consensus 235 L~~gv~i~~~~~V~~I~~~~~~v~V~~-~~G~--~~~ad~VI~a~~~~~l 281 (493)
...|+++++++.|++|+.+++++.|++ .+|+ +++||.||.|.+....
T Consensus 109 ~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 109 IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 345889999999999998878787775 5664 6899999999987654
No 75
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.36 E-value=4.2e-10 Score=112.83 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=34.7
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
||+|||||++||++|++|+++|++|+|+|+...+|..++
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~~aS 40 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALETS 40 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhhhhe
Confidence 899999999999999999999999999999766655443
No 76
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.36 E-value=1.3e-11 Score=111.38 Aligned_cols=223 Identities=16% Similarity=0.293 Sum_probs=127.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCC--CCc-eeecccceeeCCCCCCchHHHHHHhCCce
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYS--FGC-PVDMGASWLHGVCNENPLAPLIRRLGLTL 104 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~--~g~-~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (493)
++|++|||||++|+.+|..|++.|++|+|+|+++++||.|.+... .|. ..--|+|.|+ .+++.+.+.+..+-.=.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFH--T~~~~Vwdyv~~F~e~~ 78 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFH--TDNKRVWDYVNQFTEFN 78 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceee--cCchHHHHHHhhhhhhh
Confidence 589999999999999999999999999999999999999998665 465 4456899998 46677777776642210
Q ss_pred eeeCCCCcccccCCccceeeecCCCccccHHHHHHHHHHHHHH--HHHHHHhhhcCCCCCCHH--HHHHHHHhcChhhhh
Q 039105 105 YRTSGDNSVLYDHDLESYALYDMDGNKVEKEMAIKVGEIFKRI--LNETQKVRDEHTNDMSVL--QAISIVLDRHPELRQ 180 (493)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~ 180 (493)
+...+ ...+..+....+|..+. .+...+.+. ...+.++........++. +.+. +...
T Consensus 79 ---~Y~hr--------Vla~~ng~~~~lP~nl~-ti~ql~G~~~~p~~a~~~i~~~~~~~~~~~~q~~e-------e~ai 139 (374)
T COG0562 79 ---PYQHR--------VLALVNGQLYPLPFNLN-TINQLFGKNFTPDEARKFIEEQAAEIDIAEPQNLE-------EQAI 139 (374)
T ss_pred ---hhccc--------eeEEECCeeeeccccHH-HHHHHhCccCCHHHHHHHHHHhhccccccchhhhh-------hHHH
Confidence 00000 01111111122222110 011111000 001111111100011110 0000 0111
Q ss_pred hchHHHHHHHHHHH-HHhhhcCCccccccccccc--------cccccC-CccccccChHHHHHHHhh--cCCccccceeE
Q 039105 181 EGLAYEVLQWYICR-MEAWFAVDADMISLKCWDQ--------EQVLSG-GHGLMVQGYDPVIKALSK--DIDIRLNQRVT 248 (493)
Q Consensus 181 ~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~--------~~~~~~-g~~~~~~G~~~l~~~L~~--gv~i~~~~~V~ 248 (493)
....+.+.+.++.+ ...-|+.++.++.+..... ...+.. =.+.|.+|+.++.+.+++ .++|++||.-.
T Consensus 140 s~vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~GYT~~~~kMl~hp~I~V~Lntd~~ 219 (374)
T COG0562 140 SLVGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDGYTAMFEKMLDHPNIDVRLNTDFF 219 (374)
T ss_pred HHHHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCccccHHHHHHHHhcCCCceEEecCcHH
Confidence 23455666666665 3457888888886553321 111111 246799999999999987 78999998877
Q ss_pred EEEecCCcEEEEEcCCcEEEcCEEEEecChhhh
Q 039105 249 KISNGCNKVMVTVEDGRNFVADAAIVTVPLGIL 281 (493)
Q Consensus 249 ~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l 281 (493)
.+..... + +.+..||.|-|+..+
T Consensus 220 ~~~~~~~--------~--~~~~~VvytG~iD~~ 242 (374)
T COG0562 220 DVKDQLR--------A--IPFAPVVYTGPIDAY 242 (374)
T ss_pred HHhhhhc--------c--cCCCceEEecchHhh
Confidence 7654331 1 345588888877664
No 77
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.35 E-value=1.6e-10 Score=115.33 Aligned_cols=40 Identities=40% Similarity=0.530 Sum_probs=34.7
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhC-CC-cEEEEeeCCCCCc
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDA-SF-KVVLLESRDRLGG 65 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~-G~-~V~v~E~~~~~GG 65 (493)
...++||+|||||++|+++|++|+++ |. +|+|+|++. +|+
T Consensus 27 ~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~-~~~ 68 (407)
T TIGR01373 27 PKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW-LGG 68 (407)
T ss_pred CCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc-ccC
Confidence 45689999999999999999999995 95 899999965 443
No 78
>PRK07236 hypothetical protein; Provisional
Probab=99.34 E-value=1.6e-10 Score=114.45 Aligned_cols=46 Identities=15% Similarity=0.097 Sum_probs=40.0
Q ss_pred cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 039105 238 DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKA 283 (493)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~ 283 (493)
+++|+++++|++|+.++++++|++++|+++++|.||.|.+.+...+
T Consensus 112 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR 157 (386)
T PRK07236 112 AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVR 157 (386)
T ss_pred CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHH
Confidence 4579999999999988888999999999999999999998766443
No 79
>PRK06996 hypothetical protein; Provisional
Probab=99.34 E-value=1.8e-10 Score=114.48 Aligned_cols=48 Identities=10% Similarity=0.087 Sum_probs=38.5
Q ss_pred HHHHHhh-cCCccccceeEEEEecCCcEEEEEcCC---cEEEcCEEEEecCh
Q 039105 231 VIKALSK-DIDIRLNQRVTKISNGCNKVMVTVEDG---RNFVADAAIVTVPL 278 (493)
Q Consensus 231 l~~~L~~-gv~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VI~a~~~ 278 (493)
|.+++.+ |++++++++|++++.++++++++..+| ++++||.||.|.+.
T Consensus 121 L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 121 LARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence 4444443 788999999999988888888887754 58999999999874
No 80
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.33 E-value=4.3e-10 Score=111.59 Aligned_cols=59 Identities=34% Similarity=0.485 Sum_probs=45.1
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCC--CceeeccCCCCceeecccceeeCCCCCCchHHHHHHhCCc
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRL--GGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLT 103 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~--GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (493)
++||+|||||++||++|..|+++|++|+|+|+++.. .+. .++..+. .+..++++++|+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~------------~~a~~l~-----~~~~~~l~~lGl~ 62 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGR------------IRAGVLE-----QGTVDLLREAGVG 62 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccc------------cceeEEC-----HhHHHHHHHcCCh
Confidence 589999999999999999999999999999998742 111 1222222 3567888898874
No 81
>PRK06753 hypothetical protein; Provisional
Probab=99.33 E-value=1.1e-10 Score=115.21 Aligned_cols=46 Identities=26% Similarity=0.218 Sum_probs=40.0
Q ss_pred cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 039105 238 DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKA 283 (493)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~ 283 (493)
..+|+++++|++|+.+++++.|++++|+++++|.||.|.+.+...+
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVR 155 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHHH
Confidence 4579999999999988888999999999999999999998776443
No 82
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.33 E-value=2e-10 Score=113.13 Aligned_cols=53 Identities=8% Similarity=0.096 Sum_probs=42.3
Q ss_pred HHHHHHhh--cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 039105 230 PVIKALSK--DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKA 283 (493)
Q Consensus 230 ~l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~ 283 (493)
.+.+++.+ +++++++++|++|..+++++.|.+.++ +++||.||.|.+.+...+
T Consensus 109 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~vR 163 (374)
T PRK06617 109 ILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSKVR 163 (374)
T ss_pred HHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCchhH
Confidence 34454443 378999999999998888888888777 899999999999776543
No 83
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.32 E-value=7.3e-12 Score=107.80 Aligned_cols=69 Identities=25% Similarity=0.393 Sum_probs=46.0
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhCCce
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTL 104 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (493)
...+||+|||||+|||+||++|+++|++|+|||++..+||.++. |++.|+..--......+++++|++.
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~----------Gg~lf~~iVVq~~a~~iL~elgi~y 83 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG----------GGMLFNKIVVQEEADEILDELGIPY 83 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-----------CTT---EEEETTTHHHHHHHT---
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc----------cccccchhhhhhhHHHHHHhCCcee
Confidence 36799999999999999999999999999999999999987542 2222221112245678888888874
No 84
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.31 E-value=7.8e-11 Score=108.23 Aligned_cols=42 Identities=38% Similarity=0.504 Sum_probs=38.9
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCcee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRI 67 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~ 67 (493)
...+||+|||||++||+||+.|+++|++|+|+|++..+||.+
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 357999999999999999999999999999999999998764
No 85
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.31 E-value=3e-10 Score=117.23 Aligned_cols=39 Identities=28% Similarity=0.420 Sum_probs=35.7
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLG 64 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~G 64 (493)
..++||+|||||++||++|..|+++|++|+|+|++..++
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 456999999999999999999999999999999987654
No 86
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.31 E-value=1.9e-11 Score=121.29 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=41.5
Q ss_pred hHHHHHHHh-hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhh
Q 039105 228 YDPVIKALS-KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGI 280 (493)
Q Consensus 228 ~~~l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~ 280 (493)
...+.+.+. .|++++++++|++|+.+++++.|.+.+| ++++|.||+|++...
T Consensus 152 ~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 152 AEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 344444443 3889999999999998887788888777 799999999998654
No 87
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.30 E-value=8.7e-10 Score=114.17 Aligned_cols=61 Identities=31% Similarity=0.369 Sum_probs=46.5
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhCCc
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLT 103 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (493)
+.++||+|||||++||++|+.|++.|++|+|+|+++.+....+ +..+ .....++++++|+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~r------------a~~l-----~~~~~~~l~~lGl~ 81 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSR------------AICF-----AKRSLEIFDRLGCG 81 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCe------------EEEE-----cHHHHHHHHHcCCc
Confidence 4678999999999999999999999999999999875422100 0111 23567888998875
No 88
>PRK06126 hypothetical protein; Provisional
Probab=99.29 E-value=7.5e-10 Score=114.72 Aligned_cols=37 Identities=35% Similarity=0.482 Sum_probs=34.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
...+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 4568999999999999999999999999999999753
No 89
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.28 E-value=1.2e-10 Score=116.02 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=43.0
Q ss_pred HHHHHHhh--cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhh
Q 039105 230 PVIKALSK--DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILK 282 (493)
Q Consensus 230 ~l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~ 282 (493)
.+.+.+.+ +++++++++|++++.+++++.|++.+|+++++|.||.|.+.....
T Consensus 114 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 114 SLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHH
Confidence 34454433 478999999999998888888888899889999999999876643
No 90
>PLN02463 lycopene beta cyclase
Probab=99.28 E-value=2e-09 Score=107.16 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=36.9
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGI 280 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~ 280 (493)
.|++++ +++|++|+.+++++.|++++|++++||.||.|++...
T Consensus 127 ~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 127 NGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred cCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 377775 6799999988888899999998999999999998654
No 91
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.28 E-value=9.9e-11 Score=107.95 Aligned_cols=47 Identities=34% Similarity=0.436 Sum_probs=40.9
Q ss_pred HhhcCCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCcee
Q 039105 21 ERAQIGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRI 67 (493)
Q Consensus 21 ~~~~~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~ 67 (493)
++-.....+||+|||||+|||+||+.|+++|++|+|+|++..+||.+
T Consensus 18 ~~~~~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 18 EKLLDYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred HHHHHhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 33334467999999999999999999999999999999999988754
No 92
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.28 E-value=1.1e-09 Score=108.42 Aligned_cols=32 Identities=47% Similarity=0.603 Sum_probs=31.2
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
|||+|||||+||++||+.|+++|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999996
No 93
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.26 E-value=5.8e-09 Score=102.47 Aligned_cols=50 Identities=28% Similarity=0.336 Sum_probs=41.7
Q ss_pred HHHHHhhcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhh
Q 039105 231 VIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGI 280 (493)
Q Consensus 231 l~~~L~~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~ 280 (493)
+.+.+.++..+++++.|++|+.+++.+.|++++|++++|+.||-|.++..
T Consensus 93 l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 93 LLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 44444556678999999999999888889999999999999999998544
No 94
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.26 E-value=1.5e-09 Score=107.78 Aligned_cols=39 Identities=38% Similarity=0.557 Sum_probs=35.5
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLG 64 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~G 64 (493)
..++||+|||||++||++||+|+|.|.+|+|+|++...+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 567999999999999999999999999999999966544
No 95
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.25 E-value=8.8e-11 Score=118.76 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=41.5
Q ss_pred ccccChHHHHHHHh-hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhh
Q 039105 223 LMVQGYDPVIKALS-KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGI 280 (493)
Q Consensus 223 ~~~~G~~~l~~~L~-~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~ 280 (493)
.|..-...+.+++. .|++|+.+++|++|+. ++.+.|++++| +++||+||+|++...
T Consensus 181 ~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s 237 (460)
T TIGR03329 181 QPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWM 237 (460)
T ss_pred CHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEcccccc
Confidence 33333455555543 4899999999999985 44577888888 699999999997543
No 96
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.24 E-value=1.2e-11 Score=121.10 Aligned_cols=35 Identities=37% Similarity=0.504 Sum_probs=31.0
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRDRL 63 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~ 63 (493)
+||+|||||++||+||..|+|+|++|+|||+++.+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 79999999999999999999999999999997654
No 97
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.24 E-value=5.7e-10 Score=114.75 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=38.0
Q ss_pred ccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 039105 241 IRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKA 283 (493)
Q Consensus 241 i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~ 283 (493)
++++++|++|+.++++++|++.+|+++++|.||.|.+.+...+
T Consensus 209 i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~vR 251 (668)
T PLN02927 209 IRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVR 251 (668)
T ss_pred EEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcHHH
Confidence 7899999999988888999999998999999999999776433
No 98
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.22 E-value=3.2e-10 Score=114.02 Aligned_cols=43 Identities=26% Similarity=0.383 Sum_probs=36.4
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhC-C-CcEEEEeeCCCCCcee
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDA-S-FKVVLLESRDRLGGRI 67 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~-G-~~V~v~E~~~~~GG~~ 67 (493)
...++||+|||||+.|+++|++|++. + .+|+|+||.+.+|..+
T Consensus 42 ~~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~~a 86 (497)
T PTZ00383 42 GSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVA 86 (497)
T ss_pred cCCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhhcc
Confidence 34679999999999999999999996 4 7999999987665433
No 99
>PRK07538 hypothetical protein; Provisional
Probab=99.22 E-value=2.6e-09 Score=106.74 Aligned_cols=35 Identities=37% Similarity=0.601 Sum_probs=32.5
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRDRL 63 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~ 63 (493)
+||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 48999999999999999999999999999997654
No 100
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.21 E-value=1.4e-10 Score=104.06 Aligned_cols=41 Identities=29% Similarity=0.471 Sum_probs=32.3
Q ss_pred cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecCh
Q 039105 238 DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPL 278 (493)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~ 278 (493)
+++++++++|++|..+++++.|++.++++++||+||+|++.
T Consensus 96 ~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 96 GLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp TGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred CcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 56799999999999999889999999988999999999984
No 101
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.20 E-value=2.4e-10 Score=114.45 Aligned_cols=45 Identities=36% Similarity=0.435 Sum_probs=41.2
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeec
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHT 69 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s 69 (493)
+.+.++|+|||||+|||+||.+|.+.|++|+|||+++.+||.+..
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 455789999999999999999999999999999999999998653
No 102
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.19 E-value=9.2e-09 Score=102.99 Aligned_cols=40 Identities=33% Similarity=0.450 Sum_probs=35.7
Q ss_pred hhcCCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 22 RAQIGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 22 ~~~~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
+.....++||+|||||+||++||+.|+++|++|+|+|++.
T Consensus 33 ~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 33 KKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3335578999999999999999999999999999999964
No 103
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.19 E-value=3.1e-10 Score=119.85 Aligned_cols=53 Identities=8% Similarity=0.141 Sum_probs=43.2
Q ss_pred hHHHHHHHhhcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhh
Q 039105 228 YDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGI 280 (493)
Q Consensus 228 ~~~l~~~L~~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~ 280 (493)
...+.+.+.+|++++++++|++|+.+++++.|.+++|..+++|.||+|++...
T Consensus 411 ~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 411 CRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 44455544447899999999999988888889898887788999999998765
No 104
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.18 E-value=4.2e-09 Score=109.99 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=46.4
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHh-CCCcEEEEeeCCCCC--ceeeccCCCCceeecccceeeCCCCCCchHHHHHHhC
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYD-ASFKVVLLESRDRLG--GRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLG 101 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~-~G~~V~v~E~~~~~G--G~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (493)
+++++||+|||||++||++|..|++ .|++|+|+|+.+.+- |++ .. -.....++++++|
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA--------------~g-----l~prtleiL~~lG 89 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQA--------------DG-----IACRTMEMFQAFG 89 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCee--------------eE-----EChHHHHHHHhcc
Confidence 4678999999999999999999999 499999999975321 111 01 1246788999998
Q ss_pred Cc
Q 039105 102 LT 103 (493)
Q Consensus 102 ~~ 103 (493)
+.
T Consensus 90 l~ 91 (634)
T PRK08294 90 FA 91 (634)
T ss_pred ch
Confidence 74
No 105
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.18 E-value=4.4e-10 Score=102.20 Aligned_cols=66 Identities=26% Similarity=0.209 Sum_probs=50.5
Q ss_pred cCCccccccChHHHHHHHhh-cCCccccceeEEEEe---cCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 039105 218 SGGHGLMVQGYDPVIKALSK-DIDIRLNQRVTKISN---GCNKVMVTVEDGRNFVADAAIVTVPLGILKA 283 (493)
Q Consensus 218 ~~g~~~~~~G~~~l~~~L~~-gv~i~~~~~V~~I~~---~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~ 283 (493)
.+|..+.....+.+.+.+.+ |+.++.+.+|..+.. ++..+.|+|.+|..+.|+.+|+|+++...+.
T Consensus 146 ~gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~kl 215 (399)
T KOG2820|consen 146 SGGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKL 215 (399)
T ss_pred cccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhh
Confidence 34445555555666666554 889999999999874 3445889999998899999999999887653
No 106
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.18 E-value=4.2e-09 Score=104.23 Aligned_cols=61 Identities=30% Similarity=0.353 Sum_probs=45.1
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhCCc
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLT 103 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (493)
.+||+|||||++||++|..|+++|++|+|+|+++...- . -+.++..+. .+..++++++|+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~------~----~~~~a~~l~-----~~~~~~L~~lGl~ 62 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYV------L----GRIRAGVLE-----QGTVDLLREAGVD 62 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCccc------C----CceeEeeEC-----HHHHHHHHHCCCh
Confidence 47999999999999999999999999999999874210 0 012222222 3467888888874
No 107
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.16 E-value=8.5e-09 Score=106.16 Aligned_cols=39 Identities=33% Similarity=0.494 Sum_probs=34.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCc
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGG 65 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG 65 (493)
..+||+|||||++|+++|++|+++|++|+|+|+++..+|
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~G 43 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATG 43 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCC
Confidence 469999999999999999999999999999999664433
No 108
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.14 E-value=8.2e-09 Score=102.73 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=41.3
Q ss_pred HHHHHHhh--cCCccccceeEEEEecCCcEEEEE---cCCcEEEcCEEEEecChhhhhc
Q 039105 230 PVIKALSK--DIDIRLNQRVTKISNGCNKVMVTV---EDGRNFVADAAIVTVPLGILKA 283 (493)
Q Consensus 230 ~l~~~L~~--gv~i~~~~~V~~I~~~~~~v~V~~---~~G~~~~ad~VI~a~~~~~l~~ 283 (493)
.|.+++.+ +++++++++|++++.+++++.+++ .+++++++|.||-|.+.+...+
T Consensus 112 ~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~vR 170 (400)
T PRK06475 112 ALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSMLR 170 (400)
T ss_pred HHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHhHH
Confidence 34455443 678999999999998877777665 3445799999999999887654
No 109
>PLN02697 lycopene epsilon cyclase
Probab=99.13 E-value=3.1e-08 Score=100.30 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=32.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
...+||+|||||+|||++|..|+++|++|+|+|+.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 45799999999999999999999999999999985
No 110
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.13 E-value=5.1e-10 Score=110.14 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=40.6
Q ss_pred cccccChHHHHHHHh-h-cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhh
Q 039105 222 GLMVQGYDPVIKALS-K-DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGI 280 (493)
Q Consensus 222 ~~~~~G~~~l~~~L~-~-gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~ 280 (493)
..+...+..+.+++. . |++|+.+++|++|+.. .|+|++| +++||+||+|++...
T Consensus 142 v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 142 VEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred ECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCCh
Confidence 334444556666654 3 8999999999999753 6778778 578999999998754
No 111
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.09 E-value=1.1e-08 Score=96.30 Aligned_cols=36 Identities=47% Similarity=0.737 Sum_probs=33.3
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRL 63 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~ 63 (493)
+.+||||||||+||++|..|.|+|++|.|+|+...+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 578999999999999999999999999999997644
No 112
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.09 E-value=2.9e-08 Score=98.42 Aligned_cols=36 Identities=36% Similarity=0.504 Sum_probs=33.1
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRDRLG 64 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~G 64 (493)
+||+|||||+||++||+.|+++|++|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 589999999999999999999999999999976544
No 113
>PLN02661 Putative thiazole synthesis
Probab=99.09 E-value=1.7e-09 Score=102.00 Aligned_cols=43 Identities=28% Similarity=0.420 Sum_probs=38.3
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhC-CCcEEEEeeCCCCCcee
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDA-SFKVVLLESRDRLGGRI 67 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~-G~~V~v~E~~~~~GG~~ 67 (493)
....+||+|||||++||+||++|+++ |++|+|+|++..+||.+
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~ 132 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA 132 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence 33578999999999999999999986 89999999999988754
No 114
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.08 E-value=4e-08 Score=97.56 Aligned_cols=36 Identities=39% Similarity=0.587 Sum_probs=33.7
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCc
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRDRLGG 65 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG 65 (493)
||+|||||+||+++|+.|+++|++|+|+|+++..||
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence 799999999999999999999999999999877664
No 115
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.08 E-value=2.1e-08 Score=104.19 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=34.4
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
||+|||||+|||+||+.++++|.+|+|+||....||.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~ 37 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSH 37 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCc
Confidence 8999999999999999999999999999998776664
No 116
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.07 E-value=7.3e-08 Score=100.51 Aligned_cols=40 Identities=30% Similarity=0.413 Sum_probs=36.3
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCc
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGG 65 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG 65 (493)
.+++||+|||||+.|+++|++|+++|++|+|+|+++..+|
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 4569999999999999999999999999999999865555
No 117
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.07 E-value=2.3e-09 Score=108.25 Aligned_cols=41 Identities=22% Similarity=0.443 Sum_probs=36.2
Q ss_pred CcEEEECcCHHHHHHHHHHHhC--CCcEEEEeeCCCCCceeec
Q 039105 29 PSVIVIGGGISGLAAARILYDA--SFKVVLLESRDRLGGRIHT 69 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~--G~~V~v~E~~~~~GG~~~s 69 (493)
+||+||||||+|+++|++|++. |.+|+|+|+.+.+|...+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~ 43 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSN 43 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCC
Confidence 5999999999999999999997 9999999998877755443
No 118
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.06 E-value=2.6e-09 Score=104.47 Aligned_cols=229 Identities=16% Similarity=0.136 Sum_probs=121.3
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCC---------------------CCceeecccce
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYS---------------------FGCPVDMGASW 83 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~---------------------~g~~~d~G~~~ 83 (493)
|+++|||||+|.|+.-...|..|++.|++|+.+|+++.-||..+|... ..+.+|.-+..
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKl 80 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKL 80 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--B
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHh
Confidence 567899999999999999999999999999999999999999988541 12456777776
Q ss_pred eeCCCCCCchHHHHHHhCCce--eeeCCCCcccccCCccceeeecCCCccccHHHHHH---------HHHHHHHHHHHHH
Q 039105 84 LHGVCNENPLAPLIRRLGLTL--YRTSGDNSVLYDHDLESYALYDMDGNKVEKEMAIK---------VGEIFKRILNETQ 152 (493)
Q Consensus 84 ~~~~~~~~~~~~l~~~lg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 152 (493)
+. ....+.++|-+-++.- ....-...+++..+ ....+|..-.+. -+..+.+|+..+.
T Consensus 81 l~---a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~---------~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~ 148 (438)
T PF00996_consen 81 LY---ARGPLVKLLISSGVTRYLEFKAVDGSYVYKNG---------KLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVA 148 (438)
T ss_dssp EE---TTSHHHHHHHHCTGGGGSEEEEESEEEEEETT---------EEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHH
T ss_pred hh---ccCHHHHHHHhCCcccceEEEEcceeEEEeCC---------EEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHh
Confidence 65 4466777777777652 11111112222211 112222211111 2334556666665
Q ss_pred Hhhhc--------CCCCCCHHHHHHHHHhcChhhhhhchHHHHHHHHHHHHHhhhcCCcccccc-cccc---c-----cc
Q 039105 153 KVRDE--------HTNDMSVLQAISIVLDRHPELRQEGLAYEVLQWYICRMEAWFAVDADMISL-KCWD---Q-----EQ 215 (493)
Q Consensus 153 ~~~~~--------~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~---~-----~~ 215 (493)
.+... ...+.++.+++.. .++.+...+.+...+...........++ .... . -.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~e~~~~----------f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~Slgr 218 (438)
T PF00996_consen 149 NYEEDDPSTHKGLDPEKKTFQELLKK----------FGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGR 218 (438)
T ss_dssp HGCTTBGGGSTTG-TTTSBHHHHHHH----------TTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCC
T ss_pred hcccCCcchhhccccccccHHHHHHh----------cCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhc
Confidence 44322 1223455555543 2455555444332221111100000000 0100 0 01
Q ss_pred cccCCccccccChHHHHHHHhh-----cCCccccceeEEEEec-CCcE-EEEEcCCcEEEcCEEEEec
Q 039105 216 VLSGGHGLMVQGYDPVIKALSK-----DIDIRLNQRVTKISNG-CNKV-MVTVEDGRNFVADAAIVTV 276 (493)
Q Consensus 216 ~~~~g~~~~~~G~~~l~~~L~~-----gv~i~~~~~V~~I~~~-~~~v-~V~~~~G~~~~ad~VI~a~ 276 (493)
+..++..+|.-|...|.+++.+ |+.+.+|++|.+|..+ ++++ .|.. +|++++|++||...
T Consensus 219 yG~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~dp 285 (438)
T PF00996_consen 219 YGKSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGDP 285 (438)
T ss_dssp CSSSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEEG
T ss_pred cCCCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEECC
Confidence 1233556788889999998865 8899999999999884 4444 3554 88899999999653
No 119
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.05 E-value=5.3e-09 Score=106.30 Aligned_cols=42 Identities=43% Similarity=0.620 Sum_probs=37.6
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC--CCce
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDR--LGGR 66 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~--~GG~ 66 (493)
|...+||||||||++||+||+.++++|.+|+|+||... .||.
T Consensus 1 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~ 44 (466)
T PRK08274 1 MASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGN 44 (466)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcc
Confidence 45679999999999999999999999999999999874 5664
No 120
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.05 E-value=2.6e-09 Score=102.12 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=35.8
Q ss_pred cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChh
Q 039105 238 DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLG 279 (493)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~ 279 (493)
|+++++ ++|++|..+++.+.|.+.+|+++++|+||+|++..
T Consensus 71 gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 71 GAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred CCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCC
Confidence 678888 89999998887788888888899999999999864
No 121
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.05 E-value=1.9e-09 Score=108.03 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=37.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhC--CCcEEEEeeCCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDA--SFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~--G~~V~v~E~~~~~GG~~~ 68 (493)
+.+||+||||||+|+|+|+.|++. |.+|+|+|+.+.+|-..+
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS 48 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESS 48 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence 568999999999999999999998 899999999778876544
No 122
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.05 E-value=1.6e-09 Score=108.12 Aligned_cols=56 Identities=36% Similarity=0.495 Sum_probs=47.9
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCc-EEEEeeCCCCCceeeccCCCCceeecc
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFK-VVLLESRDRLGGRIHTDYSFGCPVDMG 80 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~-V~v~E~~~~~GG~~~s~~~~g~~~d~G 80 (493)
..+++||+|||||.|||++|++|.++|.. ++||||++++||--+..+..|...+..
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p 61 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSP 61 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCc
Confidence 46789999999999999999999999998 999999999999866655556555543
No 123
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.04 E-value=6e-08 Score=100.29 Aligned_cols=40 Identities=30% Similarity=0.436 Sum_probs=36.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
..+||+|||||+|||+||..++++|.+|+|+||....||.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~ 43 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSH 43 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 4589999999999999999999999999999998766653
No 124
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.04 E-value=5.1e-09 Score=106.93 Aligned_cols=43 Identities=28% Similarity=0.438 Sum_probs=39.2
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCcee
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRI 67 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~ 67 (493)
...++||||||||++||+||+.++++|.+|+|+||...+||..
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 3457899999999999999999999999999999999988853
No 125
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.04 E-value=3.2e-09 Score=106.47 Aligned_cols=36 Identities=56% Similarity=0.821 Sum_probs=33.2
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCc
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRDRLGG 65 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG 65 (493)
||||||+|+|||+||+.++++|.+|+|+||.+..||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 899999999999999999999999999999999888
No 126
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.04 E-value=9.1e-09 Score=103.98 Aligned_cols=44 Identities=23% Similarity=0.404 Sum_probs=37.9
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhC--CCcEEEEeeCCCCCceeec
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDA--SFKVVLLESRDRLGGRIHT 69 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~--G~~V~v~E~~~~~GG~~~s 69 (493)
..++||+|||||+.|+++||+|++. |++|+|+||.+.+|+..++
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~ 48 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSN 48 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCC
Confidence 4568999999999999999999985 7899999998877765533
No 127
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.04 E-value=3.5e-09 Score=106.73 Aligned_cols=38 Identities=42% Similarity=0.604 Sum_probs=35.8
Q ss_pred cEEEECcCHHHHHHHHHHHhCC-CcEEEEeeCCCCCcee
Q 039105 30 SVIVIGGGISGLAAARILYDAS-FKVVLLESRDRLGGRI 67 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G-~~V~v~E~~~~~GG~~ 67 (493)
||||||||++||+||+.++++| .+|+|+||.+..||..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 8999999999999999999999 9999999999888763
No 128
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.03 E-value=2.9e-09 Score=108.68 Aligned_cols=42 Identities=31% Similarity=0.415 Sum_probs=37.8
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
|.+.+||+|||||++|+++|+.|+++|++|+|+|+++..+|.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~Gt 44 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASAT 44 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence 456799999999999999999999999999999998765554
No 129
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.01 E-value=2.5e-09 Score=107.03 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=39.3
Q ss_pred CCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhhhhc
Q 039105 239 IDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKA 283 (493)
Q Consensus 239 v~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~l~~ 283 (493)
..++++++|++|+.+++++.|++.+|+++++|.||.|.+.+...+
T Consensus 118 ~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vR 162 (414)
T TIGR03219 118 GIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSALR 162 (414)
T ss_pred ceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHHHH
Confidence 468999999999988888999989998999999999998777543
No 130
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.00 E-value=2.5e-09 Score=109.24 Aligned_cols=42 Identities=36% Similarity=0.436 Sum_probs=37.6
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
|..++||+|||||++|+++|++|+++|.+|+|+|+++..+|.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~Gt 44 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGT 44 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCC
Confidence 567799999999999999999999999999999998655443
No 131
>PTZ00367 squalene epoxidase; Provisional
Probab=98.99 E-value=6.7e-08 Score=98.99 Aligned_cols=36 Identities=33% Similarity=0.423 Sum_probs=33.4
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
...+||+|||||++|+++|+.|+++|++|+|+|++.
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 357899999999999999999999999999999964
No 132
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.97 E-value=9.4e-09 Score=101.81 Aligned_cols=36 Identities=39% Similarity=0.703 Sum_probs=33.9
Q ss_pred EEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCcee
Q 039105 32 IVIGGGISGLAAARILYDASFKVVLLESRDRLGGRI 67 (493)
Q Consensus 32 ~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~ 67 (493)
+|||||+|||+||+.|+++|++|+|+|+++.+|+.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~ 36 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKL 36 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccc
Confidence 699999999999999999999999999999998764
No 133
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.96 E-value=1.9e-07 Score=90.87 Aligned_cols=71 Identities=24% Similarity=0.266 Sum_probs=52.2
Q ss_pred CCcEEEECcCHHHHHHHHHHHhC----CCcEEEEeeCCCCCceeeccC--CCCceeecccceeeCCCCCCchHHHHHHhC
Q 039105 28 LPSVIVIGGGISGLAAARILYDA----SFKVVLLESRDRLGGRIHTDY--SFGCPVDMGASWLHGVCNENPLAPLIRRLG 101 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~----G~~V~v~E~~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (493)
..++=|||+|+|+|+||.+|.|- |.+|.|+|+.+.+||.+-+.. ..||.+-.|-+.- .....+.+|+..+.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~~---~~~eclwdLls~IP 78 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMME---FHYECLWDLLSSIP 78 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCcccc---chhHHHHHHHHhCC
Confidence 46789999999999999999985 679999999999999986543 3466555443321 13345666666654
No 134
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.94 E-value=1.3e-08 Score=86.76 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=38.2
Q ss_pred HHHHHhhcCCc-cccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecCh
Q 039105 231 VIKALSKDIDI-RLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPL 278 (493)
Q Consensus 231 l~~~L~~gv~i-~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~ 278 (493)
+.+.+..|++| +...+|+.|...++++.|.+.+|..+.||+||+|++.
T Consensus 107 ~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 107 LLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 44444445543 3577999999999889999999999999999999864
No 135
>PLN02985 squalene monooxygenase
Probab=98.94 E-value=1.7e-07 Score=95.57 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=35.9
Q ss_pred hhcCCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 22 RAQIGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 22 ~~~~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
+......+||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus 37 ~~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 37 EERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred ccCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3335678999999999999999999999999999999964
No 136
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.94 E-value=3e-08 Score=100.81 Aligned_cols=43 Identities=30% Similarity=0.461 Sum_probs=39.3
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
|...||++|||||++|++||..|++.|++|+|+|+. .+||.|.
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 43 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL 43 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence 456799999999999999999999999999999994 8899875
No 137
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.93 E-value=5.5e-09 Score=102.81 Aligned_cols=44 Identities=41% Similarity=0.524 Sum_probs=40.6
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeec
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHT 69 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s 69 (493)
....+|+|||||+|||++|.+|.+.|++|+||||.+.+||....
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y 47 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKY 47 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEee
Confidence 45689999999999999999999999999999999999998654
No 138
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.92 E-value=3.8e-08 Score=99.89 Aligned_cols=42 Identities=26% Similarity=0.314 Sum_probs=39.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
.++||+|||||++|++||++|++.|++|+|+|+++.+||.|.
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~ 45 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCT 45 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccc
Confidence 569999999999999999999999999999999889999863
No 139
>PRK09897 hypothetical protein; Provisional
Probab=98.91 E-value=2.3e-08 Score=101.30 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=35.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCC--CcEEEEeeCCCCC-ceee
Q 039105 28 LPSVIVIGGGISGLAAARILYDAS--FKVVLLESRDRLG-GRIH 68 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G--~~V~v~E~~~~~G-G~~~ 68 (493)
+++|+|||||++|+++|.+|.+.+ .+|+|||++..+| |...
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ay 44 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPY 44 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceee
Confidence 468999999999999999999864 5899999998888 5443
No 140
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.91 E-value=1.7e-08 Score=103.41 Aligned_cols=43 Identities=33% Similarity=0.373 Sum_probs=37.7
Q ss_pred cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhh
Q 039105 238 DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGI 280 (493)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~ 280 (493)
|++++++++|++|..+++.+.|.+.+|+++.+|++|+|++...
T Consensus 281 gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 281 PIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred CCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 7889999999999887777888888888899999999998653
No 141
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.90 E-value=5e-08 Score=98.91 Aligned_cols=43 Identities=30% Similarity=0.380 Sum_probs=39.5
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
..+|||+|||||++|++||..|++.|++|+|+|+.+.+||.|.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 4579999999999999999999999999999999888898763
No 142
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.90 E-value=7.7e-08 Score=94.16 Aligned_cols=37 Identities=32% Similarity=0.651 Sum_probs=33.9
Q ss_pred cEEEECcCHHHHHHHHHHHhC--CCcEEEEeeCCCCCce
Q 039105 30 SVIVIGGGISGLAAARILYDA--SFKVVLLESRDRLGGR 66 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~--G~~V~v~E~~~~~GG~ 66 (493)
||+|||||+|||++|+.|+++ |++|+|+|+.+..||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999987 9999999998876653
No 143
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.89 E-value=2.5e-08 Score=102.36 Aligned_cols=43 Identities=23% Similarity=0.306 Sum_probs=37.7
Q ss_pred cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhh
Q 039105 238 DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGI 280 (493)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~ 280 (493)
|++++++++|.+|...++.+.|.+.+|+++++|.||+|++...
T Consensus 280 gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 280 DVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred CCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 6789999999999987777888888888899999999998744
No 144
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.88 E-value=5.9e-08 Score=97.87 Aligned_cols=40 Identities=35% Similarity=0.500 Sum_probs=37.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
+|||+|||||++|++||..+++.|++|+|+|+ +.+||.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence 58999999999999999999999999999999 68999875
No 145
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.87 E-value=7.4e-08 Score=99.21 Aligned_cols=43 Identities=26% Similarity=0.485 Sum_probs=39.4
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
...++||||||+| +||+||...+++|.+|+|+||.+.+||.+.
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 3468999999999 899999999999999999999999999754
No 146
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.1e-08 Score=94.31 Aligned_cols=41 Identities=41% Similarity=0.664 Sum_probs=34.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCc-EEEEeeCCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFK-VVLLESRDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~-V~v~E~~~~~GG~~~ 68 (493)
+++||+|||||++||+||.+++++|.+ ++|+|+ ..+||...
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~ 43 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLT 43 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccc
Confidence 579999999999999999999999999 555555 77776543
No 147
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.87 E-value=2.3e-08 Score=101.34 Aligned_cols=41 Identities=34% Similarity=0.413 Sum_probs=36.5
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC-CCCCce
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESR-DRLGGR 66 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~-~~~GG~ 66 (493)
..++||+|||||+||+.||+.+++.|++|+|+|++ +.+|+.
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 35699999999999999999999999999999997 467653
No 148
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=4.6e-08 Score=102.27 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=35.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCc
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGG 65 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG 65 (493)
..+||+|||||+|||+||..+++.|.+|+|+|+...+|+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~ 72 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRR 72 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 358999999999999999999999999999999777653
No 149
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.86 E-value=4.7e-08 Score=99.21 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=37.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
+++||+|||||++|++||.+|++.|++|+|+|+ +.+||.|.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~ 43 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCL 43 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence 469999999999999999999999999999998 57888874
No 150
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.86 E-value=3.4e-08 Score=98.77 Aligned_cols=39 Identities=21% Similarity=0.385 Sum_probs=34.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
..+||+|||+|.|||+||..++ .|.+|+|+||....||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 5689999999999999999984 79999999998877764
No 151
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.85 E-value=6.2e-07 Score=89.22 Aligned_cols=42 Identities=40% Similarity=0.470 Sum_probs=38.9
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCcee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRI 67 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~ 67 (493)
.+.+||+|||||++|+.+|..++.+|++|+++|+++...|..
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTS 51 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTS 51 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCccc
Confidence 378999999999999999999999999999999999877764
No 152
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.85 E-value=4.5e-08 Score=99.14 Aligned_cols=41 Identities=37% Similarity=0.486 Sum_probs=38.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
+|||+|||||++|++||..++++|++|+|+|+++.+||.|.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 59999999999999999999999999999998888999864
No 153
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.85 E-value=1.5e-08 Score=103.01 Aligned_cols=41 Identities=41% Similarity=0.594 Sum_probs=34.9
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeec
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHT 69 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s 69 (493)
++|+|||||+|||+||..|.+.|++|++||+++.+||.-+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 67999999999999999999999999999999999998653
No 154
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.84 E-value=8.8e-08 Score=99.47 Aligned_cols=44 Identities=32% Similarity=0.395 Sum_probs=40.3
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
....+||+|||+|++|++||+.++++|++|+|+|++...||.+.
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 45689999999999999999999999999999999988888754
No 155
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.83 E-value=8.6e-08 Score=100.18 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=35.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCc
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGG 65 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG 65 (493)
..+||+|||||+|||+||..++++|.+|+|+||....||
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 458999999999999999999999999999999876555
No 156
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.83 E-value=4.8e-08 Score=100.50 Aligned_cols=41 Identities=27% Similarity=0.408 Sum_probs=37.3
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
...+||+|||||+|||+||..+++.|.+|+|+||....||.
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 45799999999999999999999999999999998877663
No 157
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.82 E-value=8.9e-08 Score=96.49 Aligned_cols=41 Identities=37% Similarity=0.570 Sum_probs=37.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
++|||+|||||++|++||..|++.|++|+|+|+ +.+||.|.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~ 41 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCV 41 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecc-ccccccee
Confidence 369999999999999999999999999999999 56898764
No 158
>PRK07121 hypothetical protein; Validated
Probab=98.81 E-value=9.7e-08 Score=97.57 Aligned_cols=42 Identities=31% Similarity=0.385 Sum_probs=38.6
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCcee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRI 67 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~ 67 (493)
...+||||||||+|||+||++++++|.+|+|+||....||..
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s 59 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT 59 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence 357999999999999999999999999999999998888854
No 159
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.81 E-value=1.2e-07 Score=96.32 Aligned_cols=41 Identities=37% Similarity=0.435 Sum_probs=37.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
..||++|||||++|++||..|++.|++|+|+|+.. +||.|.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~ 43 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCL 43 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-ccccee
Confidence 56999999999999999999999999999999966 898764
No 160
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.81 E-value=1.4e-07 Score=97.60 Aligned_cols=42 Identities=43% Similarity=0.676 Sum_probs=38.7
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC--CCCcee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRD--RLGGRI 67 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~--~~GG~~ 67 (493)
...+||+|||+|.|||+||..++++|.+|+|+||.. ..||.+
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence 467999999999999999999999999999999998 788864
No 161
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.80 E-value=1.9e-07 Score=95.68 Aligned_cols=41 Identities=32% Similarity=0.527 Sum_probs=37.7
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCcee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRI 67 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~ 67 (493)
...+|||||||| +||+||+++++.|.+|+|+||....||..
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 457999999999 99999999999999999999998888854
No 162
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.80 E-value=1.3e-07 Score=98.28 Aligned_cols=42 Identities=36% Similarity=0.486 Sum_probs=38.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
..+||+|||||++||+||+.++++|.+|+|+||....||...
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 478999999999999999999999999999999998888753
No 163
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.80 E-value=2.8e-08 Score=102.60 Aligned_cols=43 Identities=33% Similarity=0.622 Sum_probs=38.4
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
|.+++||+|||||+|||+||..|++.|++|+|+|+ ...||.+.
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~-~~~GG~~~ 43 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEK-DDFGGQIT 43 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCceEE
Confidence 35679999999999999999999999999999999 47888754
No 164
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.78 E-value=1.6e-07 Score=97.96 Aligned_cols=57 Identities=23% Similarity=0.158 Sum_probs=43.9
Q ss_pred ccchhHHHHHHHhhcCC---CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 10 NLLDDTVASLIERAQIG---SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 10 ~~~~~~~~~~~~~~~~~---~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
|+..+++++..-..++. ..+||+|||||+|||+||+.++++|.+|+|+||....||.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~ 67 (617)
T PTZ00139 8 NRLTRTFFSGHLSSAYPVIDHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSH 67 (617)
T ss_pred hccccccccchhhhcccccccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCC
Confidence 34445555544333332 4689999999999999999999999999999998776653
No 165
>PRK12839 hypothetical protein; Provisional
Probab=98.78 E-value=1.7e-07 Score=96.80 Aligned_cols=44 Identities=30% Similarity=0.416 Sum_probs=40.6
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
...++||+|||+|.+||+||+.|+++|.+|+|+|+...+||.+.
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 45689999999999999999999999999999999999998764
No 166
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.78 E-value=7e-08 Score=98.57 Aligned_cols=38 Identities=26% Similarity=0.579 Sum_probs=34.6
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
++||+|||+|.|||+||..+++ |.+|+|+||....||.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~ 40 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN 40 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC
Confidence 5899999999999999999976 8999999998877764
No 167
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.78 E-value=1.5e-07 Score=95.82 Aligned_cols=38 Identities=37% Similarity=0.476 Sum_probs=34.6
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
.+||+|||||+|||+||+.+++.|. |+|+||.+..||.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~ 39 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGN 39 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCc
Confidence 4799999999999999999999997 9999998776664
No 168
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.78 E-value=3e-07 Score=94.96 Aligned_cols=42 Identities=29% Similarity=0.540 Sum_probs=38.6
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCcee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRI 67 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~ 67 (493)
..++||+|||+|++||+||+.++++|.+|+|+|+....||.+
T Consensus 4 d~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 4 DETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 347999999999999999999999999999999988888864
No 169
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.77 E-value=9.9e-09 Score=102.60 Aligned_cols=40 Identities=43% Similarity=0.598 Sum_probs=33.7
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeec
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHT 69 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s 69 (493)
||||||||++|++||+.++|.|.+|+|+|+.+.+||...+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence 8999999999999999999999999999999999997543
No 170
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.76 E-value=1.5e-07 Score=95.25 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=32.2
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
++||+|||||+|||+||..++++|.+|+|+||..
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4899999999999999999999999999999964
No 171
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.76 E-value=2.1e-07 Score=96.76 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=36.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCC---CcEEEEeeCCCCCce
Q 039105 27 SLPSVIVIGGGISGLAAARILYDAS---FKVVLLESRDRLGGR 66 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G---~~V~v~E~~~~~GG~ 66 (493)
..+||+|||||+|||+||..++++| .+|+|+||....||.
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~ 46 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH 46 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC
Confidence 4689999999999999999999998 899999998876664
No 172
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.76 E-value=3.3e-07 Score=94.72 Aligned_cols=42 Identities=26% Similarity=0.408 Sum_probs=38.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCcee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRI 67 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~ 67 (493)
.+.+||+|||+|.+|++||..++++|.+|+|+|+...+||.+
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGST 46 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccc
Confidence 457999999999999999999999999999999998888764
No 173
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=1.2e-07 Score=98.40 Aligned_cols=39 Identities=23% Similarity=0.434 Sum_probs=34.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHhC--CCcEEEEeeCCCCCce
Q 039105 28 LPSVIVIGGGISGLAAARILYDA--SFKVVLLESRDRLGGR 66 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~--G~~V~v~E~~~~~GG~ 66 (493)
.+||+|||||+|||+||+.++++ |.+|+|+||....||.
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~ 43 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH 43 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence 57999999999999999999987 4899999998766653
No 174
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.73 E-value=5e-07 Score=86.30 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=40.3
Q ss_pred HHHHHHHhh-cCCccccceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecC
Q 039105 229 DPVIKALSK-DIDIRLNQRVTKISNGCNK-VMVTVEDGRNFVADAAIVTVP 277 (493)
Q Consensus 229 ~~l~~~L~~-gv~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~a~~ 277 (493)
+.+.+.|.+ |++|+++++|..|+..++. ..|.+++|+++.+|+||+|.+
T Consensus 177 kni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 177 KNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred HHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccC
Confidence 334444443 8999999999999998775 468889999999999999996
No 175
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.73 E-value=8e-08 Score=92.34 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=33.0
Q ss_pred cCCccccceeEEEEecCCcE-EEEEcCCcEEEcCEEEEecCh
Q 039105 238 DIDIRLNQRVTKISNGCNKV-MVTVEDGRNFVADAAIVTVPL 278 (493)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VI~a~~~ 278 (493)
+++| ...+|++|..+++++ .|.+.+|+++.+|.||+|+++
T Consensus 110 nl~i-~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 110 NLTI-IQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TEEE-EES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CeEE-EEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 5667 477999999988885 699999999999999999987
No 176
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.73 E-value=3.3e-07 Score=95.00 Aligned_cols=42 Identities=24% Similarity=0.428 Sum_probs=38.7
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
+..++||+|||+|++||+||+.++++|.+|+|+||....||.
T Consensus 8 ~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 8 FDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 456799999999999999999999999999999999888874
No 177
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.72 E-value=2.7e-07 Score=95.27 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=33.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC-CCce
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDR-LGGR 66 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~-~GG~ 66 (493)
..+||+|||||.|||+||..+ +.|.+|+|+||... .||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~ 45 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC 45 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence 458999999999999999999 99999999999754 3443
No 178
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.70 E-value=2.5e-07 Score=91.63 Aligned_cols=43 Identities=37% Similarity=0.461 Sum_probs=39.9
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
..+||++|||||.+|.+||.++++.|.+|+|+|+....||-|-
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCl 44 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCL 44 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEE
Confidence 4679999999999999999999999999999999878999874
No 179
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.70 E-value=2.3e-06 Score=91.86 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=31.4
Q ss_pred CcEEEECcCHHHHHHHHHHHhC--CCcEEEEeeCCC
Q 039105 29 PSVIVIGGGISGLAAARILYDA--SFKVVLLESRDR 62 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~--G~~V~v~E~~~~ 62 (493)
.+|+|||||++||+||+.|+++ |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4799999999999999999998 899999999764
No 180
>PRK10262 thioredoxin reductase; Provisional
Probab=98.68 E-value=2.6e-07 Score=89.11 Aligned_cols=42 Identities=24% Similarity=0.428 Sum_probs=37.5
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
.+++||+|||||+|||+||..|+++|++|+|+|+ ...||.+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~ 45 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLT 45 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCcee
Confidence 4789999999999999999999999999999997 46787654
No 181
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=3.7e-07 Score=94.78 Aligned_cols=40 Identities=23% Similarity=0.207 Sum_probs=36.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
..+||+|||||+|||+||..++++|.+|+|+||....||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 4689999999999999999999999999999998776664
No 182
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.68 E-value=7e-07 Score=90.81 Aligned_cols=42 Identities=33% Similarity=0.449 Sum_probs=36.5
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEee------CCCCCcee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLES------RDRLGGRI 67 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~------~~~~GG~~ 67 (493)
.+.||++|||||++|++||.+|++.|.+|+|+|+ ...+||.|
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c 49 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTC 49 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcc
Confidence 4579999999999999999999999999999998 24556654
No 183
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.67 E-value=1.9e-07 Score=95.98 Aligned_cols=41 Identities=29% Similarity=0.347 Sum_probs=36.2
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
....+||+|||||+|||+||..++ .|.+|+|+||....||.
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA 46 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence 346799999999999999999996 59999999998877774
No 184
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.66 E-value=3.6e-07 Score=95.84 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=35.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCc
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGG 65 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG 65 (493)
..+||+|||||+|||+||..++++|.+|+|+|+....+|
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s 42 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS 42 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 468999999999999999999999999999999776554
No 185
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.66 E-value=5.7e-07 Score=93.82 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=36.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
..+||+|||||+|||+||..++++|.+|+|+||....||.
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~ 88 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH 88 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence 4689999999999999999999999999999998766653
No 186
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.66 E-value=3e-07 Score=92.41 Aligned_cols=34 Identities=50% Similarity=0.704 Sum_probs=30.4
Q ss_pred EECcCHHHHHHHHHHHhCCCcEEEEeeCCC--CCce
Q 039105 33 VIGGGISGLAAARILYDASFKVVLLESRDR--LGGR 66 (493)
Q Consensus 33 IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~--~GG~ 66 (493)
|||+|++||+||+.++++|.+|+|+||... .||.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~ 36 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGN 36 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcC
Confidence 799999999999999999999999999874 4543
No 187
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.65 E-value=6.4e-07 Score=93.29 Aligned_cols=40 Identities=23% Similarity=0.241 Sum_probs=36.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
..+||+|||||+|||+||+.+++.|.+|+|+||....||.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 4689999999999999999999999999999997665553
No 188
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.65 E-value=2.5e-07 Score=94.65 Aligned_cols=35 Identities=31% Similarity=0.382 Sum_probs=31.4
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
...+||+|||+|+|||+||..++ |.+|+|+||...
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 35699999999999999999997 569999999876
No 189
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.65 E-value=8.4e-07 Score=92.48 Aligned_cols=37 Identities=27% Similarity=0.439 Sum_probs=33.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHhC--CCcEEEEeeCCCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDA--SFKVVLLESRDRLG 64 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~--G~~V~v~E~~~~~G 64 (493)
.+||+|||||+|||+||..+++. |.+|+|+||....+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR 49 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence 58999999999999999999998 99999999976543
No 190
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.64 E-value=8.6e-07 Score=92.11 Aligned_cols=44 Identities=36% Similarity=0.497 Sum_probs=40.0
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
...++||+|||+|.+|++||+.++++|.+|+|+|+++.+||.+.
T Consensus 13 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 13 WDAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 44578999999999999999999999999999999999998654
No 191
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.64 E-value=3.4e-07 Score=94.96 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=35.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhC--CCcEEEEeeCCCCCce
Q 039105 27 SLPSVIVIGGGISGLAAARILYDA--SFKVVLLESRDRLGGR 66 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~--G~~V~v~E~~~~~GG~ 66 (493)
..+||+|||||+|||+||..++++ |.+|+|+||....||.
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~ 44 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSH 44 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC
Confidence 358999999999999999999987 4799999998776663
No 192
>PLN02507 glutathione reductase
Probab=98.63 E-value=1.4e-06 Score=88.79 Aligned_cols=43 Identities=30% Similarity=0.299 Sum_probs=37.4
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEee---------CCCCCceee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLES---------RDRLGGRIH 68 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~---------~~~~GG~~~ 68 (493)
..+||++|||||++|+.||..+++.|.+|+|+|+ .+.+||.|.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~ 74 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCV 74 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceee
Confidence 4479999999999999999999999999999996 355777663
No 193
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.63 E-value=4.4e-07 Score=93.95 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=35.1
Q ss_pred CCcEEEECcCHHHHHHHHHHHhC--CCcEEEEeeCCCCCce
Q 039105 28 LPSVIVIGGGISGLAAARILYDA--SFKVVLLESRDRLGGR 66 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~--G~~V~v~E~~~~~GG~ 66 (493)
.+||+|||||+|||+||..++++ |.+|+|+||....||.
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~ 43 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSH 43 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC
Confidence 58999999999999999999987 5899999998877764
No 194
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.61 E-value=5.9e-07 Score=100.28 Aligned_cols=42 Identities=38% Similarity=0.584 Sum_probs=38.7
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCcee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRI 67 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~ 67 (493)
...+||||||+|.|||+||..++++|.+|+|+||....||..
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 356899999999999999999999999999999999988864
No 195
>PRK08275 putative oxidoreductase; Provisional
Probab=98.60 E-value=4.5e-07 Score=93.79 Aligned_cols=37 Identities=32% Similarity=0.481 Sum_probs=33.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhC--CCcEEEEeeCCCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDA--SFKVVLLESRDRL 63 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~--G~~V~v~E~~~~~ 63 (493)
..+||+|||||+|||+||..++++ |.+|+|+||....
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 458999999999999999999987 7899999998764
No 196
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.59 E-value=1.7e-06 Score=90.01 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=36.5
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
...+||+|||||.|||+||..+++.|.+|+|+||....||.
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~ 50 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSH 50 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence 35689999999999999999999999999999997766653
No 197
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.58 E-value=7.6e-06 Score=79.02 Aligned_cols=102 Identities=16% Similarity=0.217 Sum_probs=70.8
Q ss_pred hhhhchHHHHHHHHHHH-HHhhhcCCccccccccccccccccCCccccccChHHHHHHHhh--cCCccccceeEEE-Eec
Q 039105 178 LRQEGLAYEVLQWYICR-MEAWFAVDADMISLKCWDQEQVLSGGHGLMVQGYDPVIKALSK--DIDIRLNQRVTKI-SNG 253 (493)
Q Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~g~~~~~~G~~~l~~~L~~--gv~i~~~~~V~~I-~~~ 253 (493)
+...++++.+++.++.. +...|+...+--++.+........+|.+.++||..++.+.|.+ +.++ +|++|++| ...
T Consensus 76 L~~~gi~~~fi~Elv~a~tRvNYgQ~~~i~a~~G~vSla~a~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~ 154 (368)
T PF07156_consen 76 LKENGISERFINELVQAATRVNYGQNVNIHAFAGLVSLAGATGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRS 154 (368)
T ss_pred HHHCCCCHHHHHHHHHhheEeecccccchhhhhhheeeeeccCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEecc
Confidence 56678888998888876 4556776533222222223333457788999999999999875 7899 99999999 443
Q ss_pred CCc---EEEEEcCC---cEEEcCEEEEecChhh
Q 039105 254 CNK---VMVTVEDG---RNFVADAAIVTVPLGI 280 (493)
Q Consensus 254 ~~~---v~V~~~~G---~~~~ad~VI~a~~~~~ 280 (493)
++. +.|+..++ ..-.+|.||+|+|+..
T Consensus 155 ~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 155 SDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred CCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 333 45655432 2346799999999965
No 198
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.58 E-value=1.8e-06 Score=89.77 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=34.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCc
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGG 65 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG 65 (493)
...+||+|||||+|||+||+.+++. .+|+|+||....||
T Consensus 3 ~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 3 QHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred ceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 3568999999999999999999987 89999999765554
No 199
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.58 E-value=1.4e-06 Score=90.61 Aligned_cols=35 Identities=34% Similarity=0.446 Sum_probs=32.2
Q ss_pred EEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCc
Q 039105 31 VIVIGGGISGLAAARILYDASFKVVLLESRDRLGG 65 (493)
Q Consensus 31 v~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG 65 (493)
|+|||||+|||+||..+++.|.+|+|+||...+|+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 69999999999999999999999999999886653
No 200
>PLN02815 L-aspartate oxidase
Probab=98.57 E-value=5.9e-07 Score=92.86 Aligned_cols=39 Identities=23% Similarity=0.346 Sum_probs=35.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
..+||+|||||+|||+||..+++.| +|+|+||....||.
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 4589999999999999999999999 99999998887764
No 201
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.57 E-value=1.7e-06 Score=78.67 Aligned_cols=38 Identities=39% Similarity=0.691 Sum_probs=35.5
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCcee
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRI 67 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~ 67 (493)
-|+|||+|+|||+|+..+...|-.|+++|+..-+||..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS 48 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence 59999999999999999999987899999999999974
No 202
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.55 E-value=7.7e-07 Score=66.28 Aligned_cols=34 Identities=44% Similarity=0.699 Sum_probs=31.7
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCC
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRDRL 63 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~ 63 (493)
+++|||||..|+-+|..|++.|.+|+|+|+++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 4899999999999999999999999999997754
No 203
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.53 E-value=3.4e-06 Score=87.73 Aligned_cols=40 Identities=30% Similarity=0.369 Sum_probs=36.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
.++||+|||+|+|||+||..++++|.+|+|+||....||.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 3579999999999999999999999999999998776653
No 204
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.51 E-value=1e-06 Score=87.52 Aligned_cols=62 Identities=18% Similarity=0.091 Sum_probs=46.4
Q ss_pred cCCccccccCh---HHHHHHHh-----hcCCccccceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecChhh
Q 039105 218 SGGHGLMVQGY---DPVIKALS-----KDIDIRLNQRVTKISNGCNK-VMVTVEDGRNFVADAAIVTVPLGI 280 (493)
Q Consensus 218 ~~g~~~~~~G~---~~l~~~L~-----~gv~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~a~~~~~ 280 (493)
.++.+.|.+|. ..++.+|+ .|+.|..||+|++|....++ ..|.|..| .+++.+||.|++...
T Consensus 173 ~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 173 YGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred eeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence 45556666662 23444443 28899999999999875544 57999999 699999999998665
No 205
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.51 E-value=4.3e-06 Score=84.85 Aligned_cols=40 Identities=30% Similarity=0.540 Sum_probs=36.3
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
|+|++|||||.+|+.||..|+++|.+|+|+|+. .+||.|-
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~ 40 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAV 40 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCccc
Confidence 468999999999999999999999999999985 5788764
No 206
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.50 E-value=1.4e-07 Score=102.25 Aligned_cols=43 Identities=35% Similarity=0.570 Sum_probs=40.3
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
+..++|+|||||+|||+||++|+++|++|+|||+.+++||.++
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 3478999999999999999999999999999999999999875
No 207
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.46 E-value=1.7e-05 Score=72.87 Aligned_cols=38 Identities=34% Similarity=0.465 Sum_probs=33.9
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhC----CCcEEEEeeCCC
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDA----SFKVVLLESRDR 62 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~----G~~V~v~E~~~~ 62 (493)
.+.++||+|||||.+|+|.||.|.++ |.+|+|+|+++.
T Consensus 83 f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 83 FPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 34689999999999999999999874 799999999764
No 208
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.45 E-value=2e-07 Score=100.21 Aligned_cols=43 Identities=35% Similarity=0.556 Sum_probs=40.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeec
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHT 69 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s 69 (493)
..++|+|||||+|||+||++|+++|++|+|||+.+.+||.++.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 4589999999999999999999999999999999999999753
No 209
>PRK06116 glutathione reductase; Validated
Probab=98.44 E-value=1.8e-07 Score=94.66 Aligned_cols=42 Identities=40% Similarity=0.526 Sum_probs=38.3
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
..+|||+|||||++|++||..|+++|++|+|+|+. .+||.|.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~ 43 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV 43 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence 35699999999999999999999999999999994 8999763
No 210
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.43 E-value=3.8e-06 Score=86.53 Aligned_cols=39 Identities=28% Similarity=0.373 Sum_probs=35.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
..+||+|||+|+|||+||+.+++. .+|+|+||....||.
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 568999999999999999999987 899999998877764
No 211
>PTZ00058 glutathione reductase; Provisional
Probab=98.41 E-value=1.6e-07 Score=96.27 Aligned_cols=42 Identities=43% Similarity=0.549 Sum_probs=38.7
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
..+||++|||||++|++||..+++.|.+|+|+|+. .+||.|-
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCl 87 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCV 87 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccc
Confidence 36799999999999999999999999999999994 7999874
No 212
>PRK12831 putative oxidoreductase; Provisional
Probab=98.41 E-value=3.3e-07 Score=92.51 Aligned_cols=44 Identities=30% Similarity=0.392 Sum_probs=40.8
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
....+||+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 35678999999999999999999999999999999999999874
No 213
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.41 E-value=1.6e-05 Score=76.95 Aligned_cols=41 Identities=22% Similarity=0.386 Sum_probs=36.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhC--CCcEEEEeeCCCCCcee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDA--SFKVVLLESRDRLGGRI 67 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~--G~~V~v~E~~~~~GG~~ 67 (493)
+++||++|||||.|.+.++.|++. .++|.|+||.+.++.-.
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ES 44 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALES 44 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhc
Confidence 579999999999999999999986 68999999999887554
No 214
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.41 E-value=2.7e-07 Score=93.71 Aligned_cols=41 Identities=39% Similarity=0.527 Sum_probs=38.3
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeec
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHT 69 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s 69 (493)
+|||+|||||++|++||++|+++|++|+|+|+ +.+||.|..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 48999999999999999999999999999999 899998753
No 215
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.40 E-value=3.6e-07 Score=91.60 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=40.5
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHh--CCCcEEEEeeCCCCCceeec
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYD--ASFKVVLLESRDRLGGRIHT 69 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~--~G~~V~v~E~~~~~GG~~~s 69 (493)
....++|+|||||+|||+||..|++ .|++|+|||+.+.+||.++.
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 3456789999999999999999997 69999999999999998763
No 216
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.39 E-value=3.5e-07 Score=92.20 Aligned_cols=42 Identities=36% Similarity=0.361 Sum_probs=38.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC-CCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDR-LGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~-~GG~~~ 68 (493)
++|||+|||||+||++||..|++.|++|+|+|+.+. +||.|.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 369999999999999999999999999999999864 699864
No 217
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.37 E-value=4.9e-06 Score=84.58 Aligned_cols=39 Identities=36% Similarity=0.343 Sum_probs=34.7
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCcee
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRI 67 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~ 67 (493)
+||+|||||++|+.||+.+++.|.+|+|+|++...+|.+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~ 39 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC 39 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC
Confidence 699999999999999999999999999999975555544
No 218
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.37 E-value=6.3e-06 Score=83.52 Aligned_cols=38 Identities=34% Similarity=0.532 Sum_probs=34.6
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
+++|||||++|++||..|++.|++|+|+|++ ..||.|-
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~ 39 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCL 39 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCC
Confidence 7999999999999999999999999999995 5777764
No 219
>PRK06370 mercuric reductase; Validated
Probab=98.37 E-value=3.9e-07 Score=92.47 Aligned_cols=43 Identities=33% Similarity=0.355 Sum_probs=38.9
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
|..++||+|||||++|++||..|++.|++|+|+|+. .+||.|.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 456799999999999999999999999999999994 7888774
No 220
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.37 E-value=4.2e-07 Score=91.70 Aligned_cols=42 Identities=29% Similarity=0.417 Sum_probs=38.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC-CCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRD-RLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~-~~GG~~~ 68 (493)
++|||+|||||++|++||.+|+++|++|+|+|+.+ .+||.|.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~ 44 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI 44 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence 46999999999999999999999999999999976 4799875
No 221
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.36 E-value=3.6e-06 Score=76.92 Aligned_cols=41 Identities=41% Similarity=0.678 Sum_probs=35.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC--CCCcee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRD--RLGGRI 67 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~--~~GG~~ 67 (493)
...||+|||||++||.||.+|+.+|++|+|+|... -+||.+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 46899999999999999999999999999999864 355553
No 222
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.35 E-value=1.6e-06 Score=87.01 Aligned_cols=56 Identities=41% Similarity=0.684 Sum_probs=37.1
Q ss_pred cEEEECcCHHHHHHHHHHHhCC---CcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhCCc
Q 039105 30 SVIVIGGGISGLAAARILYDAS---FKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLT 103 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G---~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (493)
||+|||||+||.++|..|++.+ ++|+|+|+.+.+ ++.+|-..+ ..+..+++.||++
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~------------~~~vGe~~~------p~~~~~~~~lgi~ 59 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP------------RIGVGESTL------PSLRPFLRRLGID 59 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---------------SSEEE--------THHHHCHHHHT--
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC------------CCCccccch------HHHHHHHHHcCCC
Confidence 7999999999999999999998 899999996432 122333322 3466788888887
No 223
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.34 E-value=5.1e-07 Score=96.73 Aligned_cols=44 Identities=41% Similarity=0.585 Sum_probs=40.5
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeec
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHT 69 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s 69 (493)
...++|+|||||+|||+||++|+++|++|+|+|+.+.+||.++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 45689999999999999999999999999999999999998753
No 224
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.31 E-value=5e-07 Score=86.48 Aligned_cols=43 Identities=47% Similarity=0.746 Sum_probs=39.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeec
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHT 69 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s 69 (493)
-..+++|||||+||++||..|++.|++|.++|+++.+||+...
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak 165 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK 165 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence 3467999999999999999999999999999999999999654
No 225
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.30 E-value=6.7e-07 Score=90.84 Aligned_cols=41 Identities=41% Similarity=0.486 Sum_probs=38.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
++|||+|||||++|++||..|++.|++|+|+|+ +.+||.|.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 459999999999999999999999999999999 78999864
No 226
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.30 E-value=6.8e-07 Score=83.90 Aligned_cols=44 Identities=27% Similarity=0.491 Sum_probs=38.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhC------CCcEEEEeeCCCCCceeec
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDA------SFKVVLLESRDRLGGRIHT 69 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~------G~~V~v~E~~~~~GG~~~s 69 (493)
.+.+||+|||||+||||||.+|.+. ..+|+|+|+...+||+.-|
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 4679999999999999999999763 4689999999999998543
No 227
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.28 E-value=1.3e-05 Score=80.92 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=33.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
++||++|||||.+|..||.. +.|.+|+|+|+ +.+||-|-
T Consensus 1 ~~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~ 39 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCL 39 (452)
T ss_pred CCcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeee
Confidence 35999999999999998754 46999999998 67898874
No 228
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.28 E-value=1.7e-05 Score=81.16 Aligned_cols=42 Identities=38% Similarity=0.395 Sum_probs=38.3
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
+..++||+|||||.|||.||..++++|.+|+|+||....+|+
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~ 44 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH 44 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCc
Confidence 456799999999999999999999999999999998877754
No 229
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.27 E-value=2.5e-05 Score=75.69 Aligned_cols=36 Identities=31% Similarity=0.603 Sum_probs=32.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCC--CcEEEEeeCCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDAS--FKVVLLESRDR 62 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G--~~V~v~E~~~~ 62 (493)
.++.|||||||.+||.+|..|.++- .+|+++|+++.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 4678999999999999999999974 89999999764
No 230
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.27 E-value=9.4e-07 Score=96.82 Aligned_cols=42 Identities=33% Similarity=0.461 Sum_probs=39.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
..++|+|||||+|||+||+.|+++|++|+|||+.+.+||.++
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 468999999999999999999999999999999999999865
No 231
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.27 E-value=3.8e-05 Score=79.71 Aligned_cols=33 Identities=30% Similarity=0.579 Sum_probs=30.7
Q ss_pred cEEEECcCHHHHHHHHHHH----hCCCcEEEEeeCCC
Q 039105 30 SVIVIGGGISGLAAARILY----DASFKVVLLESRDR 62 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~----~~G~~V~v~E~~~~ 62 (493)
||+|||||+|||+||..++ ++|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 8999999999999999998 67999999999764
No 232
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.26 E-value=1.1e-06 Score=92.98 Aligned_cols=43 Identities=30% Similarity=0.477 Sum_probs=40.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeec
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHT 69 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s 69 (493)
..++|+|||||+|||+||+.|++.|++|+|||+.+.+||.++.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 5689999999999999999999999999999999999998653
No 233
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.26 E-value=1.1e-06 Score=89.80 Aligned_cols=43 Identities=35% Similarity=0.475 Sum_probs=37.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC--------CCCceee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRD--------RLGGRIH 68 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~--------~~GG~~~ 68 (493)
.-+||++|||||++|++||.+|+++|++|+|+|+.. .+||.|-
T Consensus 3 ~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~ 53 (499)
T PTZ00052 3 TFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCV 53 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceec
Confidence 346999999999999999999999999999999732 4899873
No 234
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.26 E-value=1.4e-06 Score=86.06 Aligned_cols=44 Identities=27% Similarity=0.247 Sum_probs=39.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHH-hCCCcEEEEeeCCCCCceeec
Q 039105 26 GSLPSVIVIGGGISGLAAARILY-DASFKVVLLESRDRLGGRIHT 69 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~-~~G~~V~v~E~~~~~GG~~~s 69 (493)
...++|+|||||+|||.||.+|. +.|++|+|||+.+.+||.++.
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 34678999999999999999875 569999999999999999875
No 235
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.26 E-value=1.3e-06 Score=87.94 Aligned_cols=43 Identities=35% Similarity=0.499 Sum_probs=39.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
...++|+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 3568999999999999999999999999999999999999764
No 236
>PRK14694 putative mercuric reductase; Provisional
Probab=98.25 E-value=1.1e-06 Score=89.35 Aligned_cols=42 Identities=31% Similarity=0.379 Sum_probs=38.5
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
..++||+|||||++|++||..|++.|++|+|+|+. .+||.|.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV 45 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence 35799999999999999999999999999999994 7899875
No 237
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.24 E-value=1.1e-06 Score=89.31 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=36.1
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
|||+|||||++|++||..|++.|++|+|+|+.. +||.|-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 699999999999999999999999999999954 888864
No 238
>PRK13748 putative mercuric reductase; Provisional
Probab=98.23 E-value=1.1e-06 Score=91.47 Aligned_cols=41 Identities=32% Similarity=0.387 Sum_probs=38.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
+.+||+|||||++|++||..|++.|.+|+|+|++ .+||.|.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~ 137 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV 137 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence 4699999999999999999999999999999996 8999874
No 239
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.22 E-value=3.6e-07 Score=77.80 Aligned_cols=66 Identities=24% Similarity=0.512 Sum_probs=50.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHhC--CCcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhCCc
Q 039105 28 LPSVIVIGGGISGLAAARILYDA--SFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLT 103 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~--G~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (493)
..||+|||||-+||+|||..+++ ..+|.|+|.+--+||-++ .|++.|...--.++..-+++|+|++
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW----------LGGQLFSAMvvRKPAhLFL~Eigvp 143 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW----------LGGQLFSAMVVRKPAHLFLQEIGVP 143 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc----------ccchhhhhhhhcChHHHHHHHhCCC
Confidence 46899999999999999999965 689999999999988754 2333332222235666788999987
No 240
>PRK07846 mycothione reductase; Reviewed
Probab=98.22 E-value=1.8e-05 Score=79.80 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=32.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
+||++|||||++|.+||.. +.|.+|+|+|+ +.+||-|-
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~ 38 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCL 38 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCccc
Confidence 4899999999999999876 46999999998 67888763
No 241
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.22 E-value=1.5e-05 Score=87.04 Aligned_cols=36 Identities=36% Similarity=0.408 Sum_probs=33.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
..+||+|||||.|||+||..+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 468999999999999999999999999999999764
No 242
>PRK14727 putative mercuric reductase; Provisional
Probab=98.22 E-value=1.5e-06 Score=88.52 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=39.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
.++|++|||||++|++||..|++.|.+|+|+|+.+.+||.|.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~ 56 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCV 56 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEec
Confidence 569999999999999999999999999999999889999985
No 243
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.21 E-value=8.4e-06 Score=82.46 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=34.7
Q ss_pred hcCCccccceeEEEEecCCcEEEEEc-CCcEEE--cCEEEEecChhh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVE-DGRNFV--ADAAIVTVPLGI 280 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~-~G~~~~--ad~VI~a~~~~~ 280 (493)
.|++++++++|++|..+++.+.+... +|++++ +|++|+|++...
T Consensus 69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence 37889999999999988877777642 355666 999999998643
No 244
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.20 E-value=1.8e-06 Score=92.77 Aligned_cols=43 Identities=30% Similarity=0.463 Sum_probs=39.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
...++|+|||||+|||+||++|+++|++|+|||+.+.+||.++
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 3578999999999999999999999999999999999999865
No 245
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.18 E-value=2.5e-06 Score=86.60 Aligned_cols=43 Identities=42% Similarity=0.593 Sum_probs=39.6
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
...++|+|||||++||+||+.|++.|++|+|+|+.+.+||.++
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 3457999999999999999999999999999999999998764
No 246
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.17 E-value=1.8e-06 Score=85.78 Aligned_cols=42 Identities=38% Similarity=0.383 Sum_probs=39.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeec
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHT 69 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s 69 (493)
..+|+|||||++||+||+.|+++|++|+|+|+.+.+||++..
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 488999999999999999999999999999999999999764
No 247
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.15 E-value=2.7e-06 Score=82.80 Aligned_cols=37 Identities=35% Similarity=0.381 Sum_probs=33.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLG 64 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~G 64 (493)
+.||+|||||++|+.||+.|++.|++|+|+|+.+...
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 4699999999999999999999999999999876543
No 248
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.14 E-value=3e-06 Score=89.19 Aligned_cols=42 Identities=33% Similarity=0.532 Sum_probs=39.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
..++|+|||||++||+||+.|++.|++|+|||+.+.+||.++
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 478999999999999999999999999999999999999865
No 249
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.13 E-value=3.2e-06 Score=89.08 Aligned_cols=42 Identities=31% Similarity=0.530 Sum_probs=39.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
..++|+|||||++||+||+.|++.|++|+|+|+++.+||.++
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999999864
No 250
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.13 E-value=2.5e-06 Score=90.47 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=35.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCc
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGG 65 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG 65 (493)
...++|+|||||+|||+||++|++.|++|+|+|+.+..|+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 4578899999999999999999999999999999766544
No 251
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=6.5e-05 Score=70.78 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=41.4
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeecc
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTD 70 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~ 70 (493)
.+.|||+|+|-|+.=...+..|+..|.+|+.+|+++.-||-.+|.
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasl 46 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASL 46 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccce
Confidence 345999999999999999999999999999999999999998874
No 252
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.12 E-value=3e-06 Score=85.92 Aligned_cols=42 Identities=26% Similarity=0.386 Sum_probs=38.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhC-CCcEEEEeeC--------CCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDA-SFKVVLLESR--------DRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~-G~~V~v~E~~--------~~~GG~~~ 68 (493)
.+||++|||||.+|..||..+++. |.+|+|+|+. +.+||.|-
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCl 52 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCV 52 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeec
Confidence 569999999999999999999997 9999999984 57899874
No 253
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.12 E-value=3.6e-06 Score=85.16 Aligned_cols=42 Identities=38% Similarity=0.585 Sum_probs=39.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
..++|+|||||++||+||+.|++.|++|+|+|+.+.+||.++
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 567899999999999999999999999999999999999875
No 254
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.11 E-value=3.4e-06 Score=85.39 Aligned_cols=43 Identities=37% Similarity=0.599 Sum_probs=39.6
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
...++|+|||||++||+||+.|+++|++|+|+|+++.+||...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 4568999999999999999999999999999999999998754
No 255
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.11 E-value=2.6e-05 Score=77.52 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=35.5
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLG 279 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~ 279 (493)
.|++++++++|++|+. ++.+.+.+.+|+++.+|.||++++..
T Consensus 199 ~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 199 AGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGIS 240 (396)
T ss_pred CCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCC
Confidence 4889999999999976 45567888899899999999998743
No 256
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.08 E-value=3.4e-05 Score=76.18 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=37.0
Q ss_pred cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChh
Q 039105 238 DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLG 279 (493)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~ 279 (493)
|++++++++|++|..+++.+.+.+.+|+++.+|.||+|++..
T Consensus 197 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 197 GVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred CCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCC
Confidence 789999999999998777777888899999999999999743
No 257
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.08 E-value=2.5e-05 Score=77.65 Aligned_cols=42 Identities=5% Similarity=0.222 Sum_probs=34.5
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGI 280 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~ 280 (493)
.++++++++.|++|..++. .|.+.+|+++.+|++|+|++...
T Consensus 71 ~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 71 NNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred CCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCC
Confidence 4789999999999987654 45567888999999999998654
No 258
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.08 E-value=3.9e-06 Score=92.45 Aligned_cols=43 Identities=33% Similarity=0.516 Sum_probs=40.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeec
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHT 69 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s 69 (493)
..+||+|||||+|||+||..|++.|++|+|+|+.+.+||.+..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 4689999999999999999999999999999999999998754
No 259
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.08 E-value=3.8e-06 Score=87.75 Aligned_cols=43 Identities=40% Similarity=0.549 Sum_probs=40.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
...+.|+|||+|+|||+||-.|.|.|+.|+|+||.+|+||.+.
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence 3567899999999999999999999999999999999999875
No 260
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.05 E-value=1.1e-05 Score=79.75 Aligned_cols=59 Identities=8% Similarity=0.062 Sum_probs=47.6
Q ss_pred cccccChHHHHHHHhhcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhh
Q 039105 222 GLMVQGYDPVIKALSKDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGI 280 (493)
Q Consensus 222 ~~~~~G~~~l~~~L~~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~ 280 (493)
..+..-...+.+++.+|++|+.+++|++|+.+++++.|++.+|+.++||+||+|+++..
T Consensus 132 idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 132 LSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred cChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 33444455566655558899999999999988888899999997799999999998765
No 261
>PRK07846 mycothione reductase; Reviewed
Probab=98.05 E-value=4.3e-05 Score=77.15 Aligned_cols=43 Identities=28% Similarity=0.392 Sum_probs=36.7
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLG 279 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~ 279 (493)
.+++++++++|++|+.+++++.+.+.+|+++.+|.||+|++..
T Consensus 219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~ 261 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRV 261 (451)
T ss_pred cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCc
Confidence 4688999999999987776777888888899999999999743
No 262
>PLN02546 glutathione reductase
Probab=98.04 E-value=4.9e-06 Score=85.47 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=36.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEee---------CCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLES---------RDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~---------~~~~GG~~~ 68 (493)
.+|||+|||||.+|+.||..+++.|++|+|+|+ ...+||-|-
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~ 128 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCV 128 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCccc
Confidence 358999999999999999999999999999996 245777763
No 263
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.03 E-value=7.9e-05 Score=72.48 Aligned_cols=32 Identities=38% Similarity=0.631 Sum_probs=30.0
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
||+|||+|+|||+||..|.+. ++|+|+-|...
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 999999999999999999998 99999999654
No 264
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.03 E-value=3.8e-05 Score=74.71 Aligned_cols=39 Identities=31% Similarity=0.500 Sum_probs=33.6
Q ss_pred CCcEEEECcCHHHHHHHHHHHhC--C-CcEEEEeeCCCCCce
Q 039105 28 LPSVIVIGGGISGLAAARILYDA--S-FKVVLLESRDRLGGR 66 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~--G-~~V~v~E~~~~~GG~ 66 (493)
+++|+|||+|.+|+..|.+|.+. . ..|.|+|.....|+-
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~G 42 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQG 42 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCC
Confidence 57999999999999999999985 2 239999999988854
No 265
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.03 E-value=5e-05 Score=77.20 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=36.1
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCC--cEEEcCEEEEecChh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDG--RNFVADAAIVTVPLG 279 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G--~~~~ad~VI~a~~~~ 279 (493)
.|++++++++|++|+.+++++.+.+.+| +++.+|.||+|++..
T Consensus 224 ~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 224 KGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRK 268 (461)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCc
Confidence 3789999999999988777777777777 479999999999743
No 266
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.02 E-value=5.2e-05 Score=77.08 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=36.9
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLG 279 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~ 279 (493)
.|++++++++|++|+.+++++.+++.+|+++++|.||+|++..
T Consensus 229 ~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 229 SGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred cCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCC
Confidence 3889999999999987767777777888889999999999744
No 267
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.00 E-value=2e-05 Score=71.60 Aligned_cols=44 Identities=39% Similarity=0.482 Sum_probs=37.9
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhC--CCcEEEEeeCCCCCceee
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDA--SFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~--G~~V~v~E~~~~~GG~~~ 68 (493)
..+++|++|||||+.||+.|.+|.-+ +.+|.|+|+....+=.-+
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqS 90 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQS 90 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeec
Confidence 45789999999999999999999866 899999999887764433
No 268
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.00 E-value=6.8e-06 Score=80.54 Aligned_cols=37 Identities=41% Similarity=0.479 Sum_probs=33.8
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCc
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGG 65 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG 65 (493)
.||+|||||++|+.||+.|++.|++|+|+|+++..|-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 3799999999999999999999999999999876653
No 269
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.00 E-value=8.2e-06 Score=82.94 Aligned_cols=42 Identities=40% Similarity=0.555 Sum_probs=39.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
..++|+|||||++||+||..|+++|++|+|+|+.+++||.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 347999999999999999999999999999999999999865
No 270
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.98 E-value=7.5e-06 Score=85.38 Aligned_cols=41 Identities=32% Similarity=0.463 Sum_probs=37.6
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC-CCCCceee
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESR-DRLGGRIH 68 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~-~~~GG~~~ 68 (493)
+||++|||||.+|..||.++++.|.+|+|+|+. +.+||-|-
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv 157 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV 157 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence 789999999999999999999999999999974 47899874
No 271
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.97 E-value=6.4e-05 Score=76.44 Aligned_cols=43 Identities=30% Similarity=0.440 Sum_probs=35.8
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCC---cEEEcCEEEEecChh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDG---RNFVADAAIVTVPLG 279 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VI~a~~~~ 279 (493)
.|++++++++|++|+.+++++.+.+.+| +++.+|.||+|++..
T Consensus 226 ~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 226 RGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCc
Confidence 3889999999999998777777776665 678999999999744
No 272
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.97 E-value=5.9e-06 Score=78.73 Aligned_cols=34 Identities=35% Similarity=0.495 Sum_probs=29.4
Q ss_pred CcEEEECcCHHHHHHHHHHHhCC-CcEEEEeeCCC
Q 039105 29 PSVIVIGGGISGLAAARILYDAS-FKVVLLESRDR 62 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G-~~V~v~E~~~~ 62 (493)
||+||||||.+|..+|.+|+++| .+|+|+||...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 69999999999999999999997 69999999544
No 273
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.95 E-value=1.2e-05 Score=78.53 Aligned_cols=44 Identities=30% Similarity=0.360 Sum_probs=40.3
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
.....+|+|||||++||+||..|++.|++|+|+|+.+.+||...
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 45667999999999999999999999999999999999998764
No 274
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.95 E-value=1.2e-05 Score=83.62 Aligned_cols=44 Identities=36% Similarity=0.517 Sum_probs=40.2
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
.....+|+|||||++||+||+.|++.|++|+|+|+.+.+||..+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 34568899999999999999999999999999999999999764
No 275
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.95 E-value=9.1e-05 Score=74.83 Aligned_cols=43 Identities=33% Similarity=0.460 Sum_probs=36.7
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLG 279 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~ 279 (493)
.++++++++.|++|+.+++++.+.+.+|+++.+|.||++++..
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRV 264 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccC
Confidence 4788999999999998777777877788889999999999743
No 276
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.94 E-value=0.0013 Score=63.92 Aligned_cols=58 Identities=19% Similarity=0.124 Sum_probs=44.4
Q ss_pred ccccChHHHHHHHh-hcCCccccceeEEEEecCCcE-EEEEcCCcEEEcCEEEEecChhhh
Q 039105 223 LMVQGYDPVIKALS-KDIDIRLNQRVTKISNGCNKV-MVTVEDGRNFVADAAIVTVPLGIL 281 (493)
Q Consensus 223 ~~~~G~~~l~~~L~-~gv~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VI~a~~~~~l 281 (493)
.+..-...+.+.+. .|++++.+++|++|..+++++ .|.+++| +++||.||+|+++..-
T Consensus 135 ~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 135 DPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred ChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 34444455555544 488999999999999887775 5777777 7999999999997663
No 277
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=9e-05 Score=72.84 Aligned_cols=45 Identities=31% Similarity=0.316 Sum_probs=36.5
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeecc
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTD 70 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~ 70 (493)
.+.|||+|||||.||.-||+..+|.|.+++++=-+-..=|.+...
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCN 46 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCN 46 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccc
Confidence 456999999999999999999999999999988764433454443
No 278
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.90 E-value=1.2e-05 Score=81.75 Aligned_cols=41 Identities=44% Similarity=0.536 Sum_probs=36.3
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC--------CCCceee
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRD--------RLGGRIH 68 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~--------~~GG~~~ 68 (493)
+||++|||||++|+.||..+++.|.+|+|+|+.. .+||.|-
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~ 50 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCV 50 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceecccccc
Confidence 4899999999999999999999999999999731 5788763
No 279
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00012 Score=68.22 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=40.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeecc
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTD 70 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~ 70 (493)
.+||+|+|.|+.=...+..|+.+|.+|+.+|+++.-|+-.+|.
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asl 48 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASL 48 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccce
Confidence 6999999999999999999999999999999999999988774
No 280
>PLN02507 glutathione reductase
Probab=97.90 E-value=0.00012 Score=74.68 Aligned_cols=43 Identities=19% Similarity=0.390 Sum_probs=36.9
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLG 279 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~ 279 (493)
.|+++++++.|++|+.+++++.+.+.+|+++.+|.||++++..
T Consensus 257 ~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 257 RGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCC
Confidence 3889999999999987766777888888889999999998643
No 281
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.90 E-value=0.00012 Score=73.86 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=32.6
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRL 63 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~ 63 (493)
..+|+|||||.+|+.+|..|++.|.+|+|+|+.+++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 457999999999999999999999999999996543
No 282
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.90 E-value=1.3e-05 Score=71.60 Aligned_cols=32 Identities=41% Similarity=0.633 Sum_probs=30.2
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
||+|||||+|||+||..|++.|.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998854
No 283
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.89 E-value=0.00013 Score=73.67 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=32.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRL 63 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~ 63 (493)
..+++|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i 201 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV 201 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 468999999999999999999999999999996543
No 284
>PRK06116 glutathione reductase; Validated
Probab=97.89 E-value=0.00013 Score=73.88 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=35.9
Q ss_pred hcCCccccceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecCh
Q 039105 237 KDIDIRLNQRVTKISNGCNK-VMVTVEDGRNFVADAAIVTVPL 278 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~a~~~ 278 (493)
.|++++++++|++|+.++++ +.+.+.+|+++.+|.||+|++.
T Consensus 221 ~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 221 KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence 38899999999999876554 7788888888999999999864
No 285
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.89 E-value=1.4e-05 Score=81.24 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=35.2
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCc
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGG 65 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG 65 (493)
+||+|||+|++|+++|+.|+++|++|+|+|++...||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999988875
No 286
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.86 E-value=1.7e-05 Score=72.65 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=31.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
++||+|||||+|||+||..|+++|+++.|+-..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g 34 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG 34 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence 689999999999999999999999999999884
No 287
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.86 E-value=1.6e-05 Score=74.24 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=33.7
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
.....||+|||||++|-+.|+.|+|.|.+|.|+||.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 456799999999999999999999999999999995
No 288
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.86 E-value=0.00015 Score=73.63 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=36.7
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLG 279 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~ 279 (493)
.|++++++++|++|+.+++++.+.+.+|+++.+|.||++++..
T Consensus 231 ~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 231 RGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSV 273 (466)
T ss_pred CCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCC
Confidence 3889999999999987777777877888899999999998643
No 289
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.85 E-value=0.00048 Score=67.50 Aligned_cols=50 Identities=28% Similarity=0.377 Sum_probs=41.3
Q ss_pred HHHHHhhcCCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 17 ASLIERAQIGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 17 ~~~~~~~~~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
...+.......++||+|||||.+|.-||.-.+-+|.+|.++|+.+..-|-
T Consensus 56 e~~l~~l~~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 56 EDLLEALKSTHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105 (680)
T ss_pred HHHHHHhhcCCcccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence 34444444557799999999999999999999999999999998775554
No 290
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.84 E-value=0.00018 Score=72.69 Aligned_cols=42 Identities=24% Similarity=0.357 Sum_probs=36.2
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecCh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPL 278 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~ 278 (493)
.|++++++++|++|+.+++++.+.+.+|+++.+|.||+|++.
T Consensus 220 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 220 RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred CCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCC
Confidence 388999999999998776667777778888999999999874
No 291
>PRK13984 putative oxidoreductase; Provisional
Probab=97.82 E-value=2.6e-05 Score=81.99 Aligned_cols=43 Identities=30% Similarity=0.496 Sum_probs=39.9
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
...++|+|||||++|++||..|+++|++|+|+|+.+.+||..+
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 4678899999999999999999999999999999999998764
No 292
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.81 E-value=2.3e-05 Score=77.47 Aligned_cols=34 Identities=38% Similarity=0.547 Sum_probs=32.2
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
++||+|||||++|++||+.|+++|++|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999999999999999999999999999863
No 293
>PRK02106 choline dehydrogenase; Validated
Probab=97.81 E-value=2.1e-05 Score=81.74 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=34.1
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHh-CCCcEEEEeeCC
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYD-ASFKVVLLESRD 61 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~-~G~~V~v~E~~~ 61 (493)
+...+|+||||||.+|+.+|.+|++ .|++|+|+|+..
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 4567999999999999999999999 799999999964
No 294
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.79 E-value=0.00022 Score=72.57 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=31.9
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
..+++|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ 206 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR 206 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 46899999999999999999999999999998553
No 295
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.78 E-value=0.00018 Score=72.20 Aligned_cols=36 Identities=25% Similarity=0.468 Sum_probs=32.1
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
.++++|||||||.||++||..|.+.+++|+|+|+++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~ 43 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRN 43 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCC
Confidence 356799999999999999999987789999999864
No 296
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.78 E-value=0.00021 Score=66.68 Aligned_cols=54 Identities=28% Similarity=0.372 Sum_probs=42.5
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhC----CCcEEEEeeCCCCCceeecc--CCCCceeec
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDA----SFKVVLLESRDRLGGRIHTD--YSFGCPVDM 79 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~----G~~V~v~E~~~~~GG~~~s~--~~~g~~~d~ 79 (493)
-+.+.+-|||+|+|||++|..|.|. |.++-|+|.-+..||..-.. ...|+.+--
T Consensus 20 VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RG 79 (587)
T COG4716 20 VDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRG 79 (587)
T ss_pred cccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecC
Confidence 3557899999999999999999985 67999999999999976432 233554443
No 297
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.78 E-value=0.00014 Score=78.47 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=35.1
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGI 280 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~ 280 (493)
.|++++++++|++|..++. .|.+.+|+++.+|++|+|++...
T Consensus 67 ~gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 67 HGITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred CCCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCCc
Confidence 3789999999999987654 56677888899999999998643
No 298
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.77 E-value=0.00024 Score=72.29 Aligned_cols=36 Identities=36% Similarity=0.531 Sum_probs=32.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRL 63 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~ 63 (493)
..+++|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 368999999999999999999999999999996543
No 299
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.76 E-value=0.00027 Score=71.96 Aligned_cols=35 Identities=37% Similarity=0.663 Sum_probs=32.2
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
..+++|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 36899999999999999999999999999999654
No 300
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.76 E-value=0.00017 Score=77.68 Aligned_cols=42 Identities=17% Similarity=0.314 Sum_probs=35.5
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecCh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPL 278 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~ 278 (493)
.|+++++++.|++|..++....|.+.+|+++.+|.||++++.
T Consensus 195 ~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 195 KGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred cCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC
Confidence 388999999999998655445688889999999999999963
No 301
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.75 E-value=0.00023 Score=71.23 Aligned_cols=39 Identities=44% Similarity=0.634 Sum_probs=36.6
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
..+++|||+|..||.+|..|+++|++|+++|+.+++||.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~ 174 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ 174 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh
Confidence 689999999999999999999999999999999888764
No 302
>PRK06370 mercuric reductase; Validated
Probab=97.75 E-value=0.00029 Score=71.60 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=32.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRL 63 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~ 63 (493)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 206 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL 206 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 468999999999999999999999999999996543
No 303
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.74 E-value=0.00027 Score=71.97 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=32.1
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
..+|+|||+|..|+-+|..|++.|.+|+|+|+.++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 217 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA 217 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 46899999999999999999999999999999653
No 304
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.72 E-value=0.00019 Score=70.89 Aligned_cols=34 Identities=12% Similarity=0.360 Sum_probs=29.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCC--CcEEEEeeCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDAS--FKVVLLESRD 61 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G--~~V~v~E~~~ 61 (493)
+++++|||||+||+++|..|.+.+ .+|+|+++.+
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 368999999999999999998864 5799999964
No 305
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.72 E-value=0.00038 Score=70.64 Aligned_cols=35 Identities=29% Similarity=0.473 Sum_probs=32.0
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
..+++|||||.+|+-+|..|.+.|.+|+|+|+.++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 46899999999999999999999999999999654
No 306
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.70 E-value=5.3e-05 Score=70.79 Aligned_cols=44 Identities=25% Similarity=0.334 Sum_probs=39.3
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhC--CCcEEEEeeCCCCCceeec
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDA--SFKVVLLESRDRLGGRIHT 69 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~--G~~V~v~E~~~~~GG~~~s 69 (493)
...+.|+|||+|+||+.+|++|.|+ +.+|.|+|+.+.|+|..+.
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 4455899999999999999999995 6899999999999998764
No 307
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.69 E-value=0.00041 Score=70.50 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=33.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRL 63 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~ 63 (493)
...+++|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i 209 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI 209 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 3478999999999999999999999999999996543
No 308
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.68 E-value=0.00038 Score=70.01 Aligned_cols=36 Identities=31% Similarity=0.590 Sum_probs=32.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
...+|+|||||.+|+-+|..|++.|.+|+++++.+.
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 346899999999999999999999999999998653
No 309
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.67 E-value=0.00017 Score=77.90 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=34.5
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGI 280 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~ 280 (493)
.|++++++++|++|..+.. .|.+.+|+++.||++|+|++...
T Consensus 72 ~gI~~~~g~~V~~Id~~~~--~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 72 HGIKVLVGERAITINRQEK--VIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred CCCEEEcCCEEEEEeCCCc--EEEECCCcEEECCEEEECCCCCc
Confidence 3789999999999977543 56677888899999999998643
No 310
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.66 E-value=0.00042 Score=70.12 Aligned_cols=36 Identities=25% Similarity=0.486 Sum_probs=32.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
...+++|||||.+|+-+|..|++.|.+|+++++.++
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 346899999999999999999999999999998543
No 311
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.66 E-value=0.00036 Score=75.43 Aligned_cols=42 Identities=10% Similarity=0.230 Sum_probs=34.9
Q ss_pred hcCCccccceeEEEEecC--CcEEEEEcCCcEEEcCEEEEecCh
Q 039105 237 KDIDIRLNQRVTKISNGC--NKVMVTVEDGRNFVADAAIVTVPL 278 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~--~~v~V~~~~G~~~~ad~VI~a~~~ 278 (493)
.|+++++++.|++|..++ ....|.+.+|+++.+|.||+|++.
T Consensus 200 ~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~ 243 (847)
T PRK14989 200 MGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGI 243 (847)
T ss_pred CCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCc
Confidence 389999999999997643 235677889999999999999963
No 312
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.64 E-value=0.00054 Score=69.22 Aligned_cols=42 Identities=31% Similarity=0.414 Sum_probs=34.7
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLG 279 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~ 279 (493)
.|++++++++|++|+.+++.+.+.+.++ ++.+|.||+|++..
T Consensus 212 ~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~ 253 (441)
T PRK08010 212 QGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQ 253 (441)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCC
Confidence 3889999999999998777777777666 58999999998643
No 313
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.63 E-value=0.00014 Score=71.43 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=35.6
Q ss_pred ccCceEEeeccccCcC---cchhHHHHHHHHHHHHHHHHHHHhCCCCcccccc
Q 039105 425 PLGNLFFGGEAVSMEH---QGSVHGAYSAGVMAAQNCQKYLLKQPGNLEKLQL 474 (493)
Q Consensus 425 ~~~~l~~aGd~~~~~~---~g~~egA~~sg~~aa~~i~~~l~~~~~~~~~~~~ 474 (493)
..+|+|.+||.+.... +-....|...|..+|+.|.+.+..+ +++.++|
T Consensus 270 ~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g~--~~~~~~~ 320 (364)
T TIGR03169 270 SHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQ--PLRPFRP 320 (364)
T ss_pred CCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcCC--CCCCCcc
Confidence 6799999999985421 1244569999999999999998654 4555665
No 314
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.62 E-value=0.00064 Score=69.11 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=34.7
Q ss_pred hcCCccccceeEEEEecCCc-EEEEEcCCcEEEcCEEEEecCh
Q 039105 237 KDIDIRLNQRVTKISNGCNK-VMVTVEDGRNFVADAAIVTVPL 278 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~a~~~ 278 (493)
.|+++++++.|++|+.++++ ..|.+.+|+++.+|.||++++.
T Consensus 244 ~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 244 NGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR 286 (486)
T ss_pred cCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC
Confidence 48899999999999876443 5677777888999999999963
No 315
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.62 E-value=0.0001 Score=68.97 Aligned_cols=42 Identities=36% Similarity=0.457 Sum_probs=40.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
..+|++|||+|++|-.||.+.++.|.+...+|++..+||.|-
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcL 79 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCL 79 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceee
Confidence 579999999999999999999999999999999999999874
No 316
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.61 E-value=0.0006 Score=69.36 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=32.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRL 63 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~ 63 (493)
..+++|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i 209 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV 209 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 468999999999999999999999999999996543
No 317
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.59 E-value=0.00052 Score=69.14 Aligned_cols=35 Identities=23% Similarity=0.496 Sum_probs=32.1
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
..+++|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 46899999999999999999999999999999654
No 318
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.57 E-value=0.00078 Score=68.96 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=36.1
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLG 279 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~ 279 (493)
.|+++++++.|++|+..++.+.+.+.+|+++.+|.||++++..
T Consensus 235 ~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 235 QGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred cCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCC
Confidence 3889999999999987666677777788889999999999743
No 319
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.56 E-value=0.00027 Score=68.21 Aligned_cols=36 Identities=31% Similarity=0.393 Sum_probs=27.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCC-CcEEEEeeCCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDAS-FKVVLLESRDR 62 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G-~~V~v~E~~~~ 62 (493)
+.+|+|+||.|+++|+.|..|.+.+ .+++.||+.+.
T Consensus 1 ~~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 1 EIYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp -EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred CceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 3589999999999999999999885 89999999664
No 320
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.55 E-value=0.0014 Score=62.42 Aligned_cols=138 Identities=15% Similarity=0.120 Sum_probs=72.5
Q ss_pred hhcCCccccceeEEEEe-------cCCc-EEEEEcCCcEEEcCEEEEecChhhhhcCcccccCCCcHHHHHHHhhcCCCc
Q 039105 236 SKDIDIRLNQRVTKISN-------GCNK-VMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGN 307 (493)
Q Consensus 236 ~~gv~i~~~~~V~~I~~-------~~~~-v~V~~~~G~~~~ad~VI~a~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 307 (493)
.+.++|..+++|..+.. +++. +.|++.+|..+..|.+|-|.+.+...+..-.++- ..++...++.
T Consensus 165 ~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~-------~~~ny~~hav 237 (481)
T KOG3855|consen 165 SDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDV-------ASWNYDQHAV 237 (481)
T ss_pred cCceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccchhhhhcCCCc-------ccccccceee
Confidence 34678888888766654 1222 5788899999999999888776654332111110 1111222222
Q ss_pred eeEEEEEcCCCCCCCCCcceeecCCCCceeeeeccccCCCCcEEEEEecchhhHHhhcCCHHHHHHHHHHHHHHhCCCC
Q 039105 308 ENKIALRFDNVFWPNVELLGVVAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDA 386 (493)
Q Consensus 308 ~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~L~~~~p~~ 386 (493)
...+.+..+ .......+..+ .+.+-+--..-++....|+..+....+..+..+++|+.++.+-..+..-.|.+
T Consensus 238 VAtl~l~~~-~~~~~~AwQRF-----lP~GpiAllpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~ 310 (481)
T KOG3855|consen 238 VATLKLEEE-AILNGVAWQRF-----LPTGPIALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRA 310 (481)
T ss_pred eEEEEeccc-ccccchhHHhc-----CCCCceeecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCc
Confidence 222233222 11111111110 00000001112344455666666666778888999999888877777665553
No 321
>PRK14727 putative mercuric reductase; Provisional
Probab=97.55 E-value=0.00091 Score=68.23 Aligned_cols=43 Identities=14% Similarity=0.256 Sum_probs=35.4
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChhh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGI 280 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~~ 280 (493)
.|++++++++|++|+.+++.+.+.+.++ ++.+|.||+|++...
T Consensus 241 ~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~p 283 (479)
T PRK14727 241 EGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHA 283 (479)
T ss_pred CCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCC
Confidence 3889999999999987777777777666 689999999997543
No 322
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.51 E-value=0.00011 Score=71.86 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=39.9
Q ss_pred HHHHHHHhh-cCCccccceeEEEEecCCcEE-EEEcCC--cEEEcCEEEEecChh
Q 039105 229 DPVIKALSK-DIDIRLNQRVTKISNGCNKVM-VTVEDG--RNFVADAAIVTVPLG 279 (493)
Q Consensus 229 ~~l~~~L~~-gv~i~~~~~V~~I~~~~~~v~-V~~~~G--~~~~ad~VI~a~~~~ 279 (493)
+.+.+++.+ |+++..+++|+++..+++++. |.+.++ ..++||+||+|++..
T Consensus 267 ~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 267 EALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 445555543 889999999999998888765 666666 379999999999865
No 323
>PRK14694 putative mercuric reductase; Provisional
Probab=97.49 E-value=0.0011 Score=67.51 Aligned_cols=42 Identities=10% Similarity=0.252 Sum_probs=34.3
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLG 279 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~ 279 (493)
.|+++++++.|++|+.+++.+.+.+.++ ++.+|.||+|++..
T Consensus 231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~ 272 (468)
T PRK14694 231 EGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRT 272 (468)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCC
Confidence 3889999999999987776666766555 79999999999643
No 324
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.48 E-value=0.0013 Score=66.90 Aligned_cols=37 Identities=38% Similarity=0.572 Sum_probs=33.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRL 63 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~ 63 (493)
...+++|||+|..|+-.|..|++.|.+|+|+|+.+++
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 3468999999999999999999999999999996543
No 325
>PTZ00058 glutathione reductase; Provisional
Probab=97.46 E-value=0.0013 Score=67.84 Aligned_cols=35 Identities=9% Similarity=0.195 Sum_probs=32.3
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
..+++|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 57899999999999999999999999999999653
No 326
>PRK13748 putative mercuric reductase; Provisional
Probab=97.46 E-value=0.0011 Score=69.22 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=34.9
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLG 279 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~ 279 (493)
.|++++++++|++|+.+++.+.+.+.++ ++.+|.||+|++..
T Consensus 323 ~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~ 364 (561)
T PRK13748 323 EGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRA 364 (561)
T ss_pred CCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCC
Confidence 3889999999999987777677777666 69999999999743
No 327
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.45 E-value=0.0014 Score=66.80 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=29.9
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEee
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLES 59 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~ 59 (493)
..+++|||||..|+-+|..|++.|.+|+|+++
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 211 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVR 211 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe
Confidence 35799999999999999999999999999987
No 328
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00013 Score=75.04 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=33.9
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
+..++|+||||+|.+|-+.|.+|+..|++|+|+|+.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 567899999999999999999999889999999994
No 329
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.34 E-value=0.00016 Score=74.72 Aligned_cols=32 Identities=34% Similarity=0.494 Sum_probs=30.2
Q ss_pred cEEEECcCHHHHHHHHHHHhCC-CcEEEEeeCC
Q 039105 30 SVIVIGGGISGLAAARILYDAS-FKVVLLESRD 61 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G-~~V~v~E~~~ 61 (493)
|+||||||.+|+.+|.+|++.| ++|+|+|+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 8999999999999999999998 7999999964
No 330
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.32 E-value=0.045 Score=56.51 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=37.7
Q ss_pred HHHHHHH-hhcCCccccceeEEEEecCCcE-EEEE---cCCc--EEEcCEEEEecChhh
Q 039105 229 DPVIKAL-SKDIDIRLNQRVTKISNGCNKV-MVTV---EDGR--NFVADAAIVTVPLGI 280 (493)
Q Consensus 229 ~~l~~~L-~~gv~i~~~~~V~~I~~~~~~v-~V~~---~~G~--~~~ad~VI~a~~~~~ 280 (493)
..+++.. ..|++|+.+++|++|..+++++ .|++ .+|+ +++|+.||+|+++..
T Consensus 132 ~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 132 AANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred HHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 3444333 3499999999999999877764 3443 2343 689999999998765
No 331
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.30 E-value=7.5e-05 Score=67.19 Aligned_cols=42 Identities=29% Similarity=0.643 Sum_probs=37.0
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCC------CcEEEEeeCCCCCce
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDAS------FKVVLLESRDRLGGR 66 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G------~~V~v~E~~~~~GG~ 66 (493)
+...++|+|||||+.|..+||+|++.+ ..|+|||.....||.
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga 54 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA 54 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence 345588999999999999999999987 689999998888775
No 332
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.30 E-value=0.002 Score=64.67 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=31.7
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecCh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPL 278 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~ 278 (493)
.|++++++++|++|..+ .|.+++|+++.+|.||++++.
T Consensus 241 ~gV~v~~~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 241 LGVDIRTKTAVKEVLDK----EVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred CCCEEEeCCeEEEEeCC----EEEECCCCEEEccEEEEccCC
Confidence 38999999999999643 366788989999999999873
No 333
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.29 E-value=0.0025 Score=66.85 Aligned_cols=36 Identities=28% Similarity=0.284 Sum_probs=32.6
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRL 63 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~ 63 (493)
..+++|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 357999999999999999999999999999997653
No 334
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.29 E-value=0.0003 Score=70.89 Aligned_cols=37 Identities=19% Similarity=0.440 Sum_probs=32.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHhC--CCcEEEEeeCCCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDA--SFKVVLLESRDRLG 64 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~--G~~V~v~E~~~~~G 64 (493)
|.+|+|||||++|++||..|++. +.+|+|+|+++..+
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 35899999999999999999886 67999999987654
No 335
>PLN02546 glutathione reductase
Probab=97.28 E-value=0.0027 Score=65.57 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=32.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
...+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~ 286 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 286 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence 346899999999999999999999999999999654
No 336
>PLN02785 Protein HOTHEAD
Probab=97.26 E-value=0.00023 Score=73.84 Aligned_cols=35 Identities=40% Similarity=0.575 Sum_probs=32.1
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
...||+||||||.+|+.+|.+|++ +.+|+|+|+..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 457999999999999999999999 68999999964
No 337
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.13 E-value=0.0033 Score=64.75 Aligned_cols=35 Identities=43% Similarity=0.424 Sum_probs=31.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
...+|+|||||..|+-+|..|++.|.+|+|+|+.+
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 34689999999999999999999999999999743
No 338
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0072 Score=58.62 Aligned_cols=45 Identities=29% Similarity=0.304 Sum_probs=36.6
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeec
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHT 69 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s 69 (493)
....+||||||||-||.-||...+|-|.+.+++-.+-..=|.+..
T Consensus 25 ~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msC 69 (679)
T KOG2311|consen 25 STSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSC 69 (679)
T ss_pred CCCcccEEEECCCccchHHHHHHHhcCCceEEeeccccccccccc
Confidence 367899999999999999999999999998888876433344443
No 339
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.87 E-value=0.0013 Score=60.94 Aligned_cols=42 Identities=38% Similarity=0.394 Sum_probs=39.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIH 68 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~ 68 (493)
..+|.+|||||-.|+++|.+.++.|.+|.|+|..-++||.|-
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCV 60 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCV 60 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEE
Confidence 579999999999999999999999999999999879999874
No 340
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.0011 Score=60.98 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=32.3
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRL 63 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~ 63 (493)
...|.|||||+||.-|||.++++|.+|.++|-++.-
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 345899999999999999999999999999997543
No 341
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0023 Score=59.20 Aligned_cols=36 Identities=39% Similarity=0.398 Sum_probs=33.1
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
..-.||.+|||||-+||+||-+.+..|.+|.++|.-
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV 51 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV 51 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence 446799999999999999999999999999999973
No 342
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.67 E-value=0.034 Score=54.12 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=41.5
Q ss_pred Ccccc-ccChHHHHHHHh-----hcCCccccceeEEEEecCCcEEEEEcCC-cEEEcCEEEEecCh
Q 039105 220 GHGLM-VQGYDPVIKALS-----KDIDIRLNQRVTKISNGCNKVMVTVEDG-RNFVADAAIVTVPL 278 (493)
Q Consensus 220 g~~~~-~~G~~~l~~~L~-----~gv~i~~~~~V~~I~~~~~~v~V~~~~G-~~~~ad~VI~a~~~ 278 (493)
|..|| .+-.+.++++|. .|++|+++++|++| +++++.|.+.++ +.++||+||+|++-
T Consensus 76 grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG 139 (376)
T TIGR03862 76 GRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGG 139 (376)
T ss_pred CEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCC
Confidence 34455 344566777765 38999999999999 344577776543 46999999999964
No 343
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.45 E-value=0.05 Score=52.59 Aligned_cols=36 Identities=25% Similarity=0.162 Sum_probs=26.4
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCC--cEEEEeeC
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASF--KVVLLESR 60 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~--~V~v~E~~ 60 (493)
..+.+.|+|||||.|+.-.+..|.+.+. +|.++=|+
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~ 224 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRS 224 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESS
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECC
Confidence 4567889999999999999999999864 67777774
No 344
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0021 Score=59.64 Aligned_cols=40 Identities=33% Similarity=0.517 Sum_probs=32.0
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCce
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGR 66 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~ 66 (493)
....|||+|||||++|-+||.+.+|+|.+.-|+- +|.||.
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQ 247 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQ 247 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCe
Confidence 4478999999999999999999999998865542 334544
No 345
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.35 E-value=0.018 Score=54.53 Aligned_cols=38 Identities=29% Similarity=0.464 Sum_probs=34.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCc
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGG 65 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG 65 (493)
+.+.+|||||+-||-.+.-..+.|.+|+++|.-+.+||
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~ 248 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG 248 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc
Confidence 45699999999999999999999999999999887764
No 346
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0065 Score=52.93 Aligned_cols=44 Identities=30% Similarity=0.366 Sum_probs=36.6
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC----CCCCceeec
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESR----DRLGGRIHT 69 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~----~~~GG~~~s 69 (493)
..+-+|+|||+|+++-+||.+++++-.+.++||-- .-+||.+.+
T Consensus 6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT 53 (322)
T KOG0404|consen 6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT 53 (322)
T ss_pred eeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee
Confidence 34458999999999999999999999999999952 335777755
No 347
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.29 E-value=0.0045 Score=52.59 Aligned_cols=32 Identities=34% Similarity=0.462 Sum_probs=30.1
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
+|+|||||-.|.++|..|+++|++|.|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999964
No 348
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.22 E-value=0.045 Score=55.56 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=31.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASF-KVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~-~V~v~E~~ 60 (493)
...+|+|||+|..|+-+|..|.+.|. +|+|+++.
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 46789999999999999999999997 89999984
No 349
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.21 E-value=0.0051 Score=62.36 Aligned_cols=38 Identities=34% Similarity=0.521 Sum_probs=33.9
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhC-CCcEEEEeeCCC
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDA-SFKVVLLESRDR 62 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~-G~~V~v~E~~~~ 62 (493)
....||.||||||-||...|.+|++. -++|+|+||...
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~ 92 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGD 92 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCC
Confidence 45789999999999999999999997 689999999543
No 350
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.20 E-value=0.046 Score=53.69 Aligned_cols=38 Identities=26% Similarity=0.428 Sum_probs=31.5
Q ss_pred hcCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecCh
Q 039105 237 KDIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPL 278 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~ 278 (493)
.|++++++++|++|..+ .|.+.+|+++.+|.||+|++.
T Consensus 204 ~gV~v~~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 204 RGIEVHEGAPVTRGPDG----ALILADGRTLPADAILWATGA 241 (364)
T ss_pred CCCEEEeCCeeEEEcCC----eEEeCCCCEEecCEEEEccCC
Confidence 37899999999998532 466678889999999999974
No 351
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.12 E-value=0.0058 Score=62.09 Aligned_cols=34 Identities=41% Similarity=0.533 Sum_probs=31.5
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCC
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRDRL 63 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~ 63 (493)
+|+|||+|.+|++||..|.++|++|+++|++..+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999997654
No 352
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.10 E-value=0.0074 Score=61.69 Aligned_cols=35 Identities=34% Similarity=0.490 Sum_probs=32.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
+..+|+|||+|.+|+++|..|+++|++|+++|+.+
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45689999999999999999999999999999865
No 353
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.91 E-value=0.067 Score=52.37 Aligned_cols=45 Identities=20% Similarity=0.343 Sum_probs=37.9
Q ss_pred hcCCccccceeEEEEecC-Cc-EEEEEcCCcEEEcCEEEEecChhhh
Q 039105 237 KDIDIRLNQRVTKISNGC-NK-VMVTVEDGRNFVADAAIVTVPLGIL 281 (493)
Q Consensus 237 ~gv~i~~~~~V~~I~~~~-~~-v~V~~~~G~~~~ad~VI~a~~~~~l 281 (493)
+|+++++++.+.+++... ++ ..|.+.+|+++.||.||+.++...+
T Consensus 268 kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 268 KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPN 314 (478)
T ss_pred cCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccc
Confidence 488999999999998754 44 4689999999999999999976553
No 354
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.90 E-value=0.011 Score=51.47 Aligned_cols=31 Identities=32% Similarity=0.526 Sum_probs=27.6
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
+|+|||||..|..-|..+++.|++|.++|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 4899999999999999999999999999995
No 355
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.80 E-value=0.1 Score=50.06 Aligned_cols=37 Identities=30% Similarity=0.404 Sum_probs=33.3
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCC-CcEEEEeeCC
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDAS-FKVVLLESRD 61 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G-~~V~v~E~~~ 61 (493)
|.+.+|+|.||-|++-|+.|..|...+ ++++.+|+.+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp 39 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKP 39 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCC
Confidence 567899999999999999999999874 8899999964
No 356
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.72 E-value=0.01 Score=51.82 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=26.8
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
++|.|||.|..||..|..|+++|++|..+|.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 469999999999999999999999999999864
No 357
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.69 E-value=0.12 Score=54.84 Aligned_cols=35 Identities=34% Similarity=0.438 Sum_probs=30.9
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeeC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASF-KVVLLESR 60 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~-~V~v~E~~ 60 (493)
....+|+|||||..|+-+|..|.+.|. +|+|+++.
T Consensus 321 ~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~ 356 (652)
T PRK12814 321 HPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRR 356 (652)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 456789999999999999999999986 59999874
No 358
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.68 E-value=0.0085 Score=54.65 Aligned_cols=34 Identities=32% Similarity=0.579 Sum_probs=27.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCC-------CcEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDAS-------FKVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G-------~~V~v~E~~ 60 (493)
++.+|+|||||+.|||+|+.+.+.+ .+|+|++-.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 4578999999999999999988843 468887753
No 359
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=0.011 Score=56.27 Aligned_cols=49 Identities=22% Similarity=0.212 Sum_probs=44.9
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCC
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSF 73 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~ 73 (493)
.++.+||||||.|+.=.-.|..++|.|.+|+=+|.+..-||..+|+...
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 4678999999999999999999999999999999999999999886543
No 360
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.44 E-value=0.018 Score=54.96 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=31.0
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
.+|.|||+|.-|.+.|..|+++|++|++++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999964
No 361
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.42 E-value=0.023 Score=47.87 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=29.0
Q ss_pred EEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 31 VIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 31 v~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
|+|+|+|..|...|+.|+++|++|.++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999843
No 362
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.33 E-value=0.025 Score=56.50 Aligned_cols=40 Identities=38% Similarity=0.576 Sum_probs=35.5
Q ss_pred cCCccccceeEEEEecCCcEEEEEcCCc--EEEcCEEEEecC
Q 039105 238 DIDIRLNQRVTKISNGCNKVMVTVEDGR--NFVADAAIVTVP 277 (493)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~V~~~~G~--~~~ad~VI~a~~ 277 (493)
|++++++++|++++..++++.+.+++|+ ++++|.|++|++
T Consensus 228 gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiG 269 (454)
T COG1249 228 GVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIG 269 (454)
T ss_pred CeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccC
Confidence 6799999999999988777888888886 689999999996
No 363
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.30 E-value=0.14 Score=57.13 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=30.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASF-KVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~-~V~v~E~~ 60 (493)
...+|+|||+|..|+-+|..|++.|. .|+|+|..
T Consensus 316 ~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~ 350 (985)
T TIGR01372 316 PGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDAR 350 (985)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccC
Confidence 45789999999999999999999995 58999874
No 364
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.28 E-value=0.028 Score=48.30 Aligned_cols=34 Identities=32% Similarity=0.409 Sum_probs=29.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
++.+|+|+|+|.+|+.||..|...|.+|+++|.+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 4588999999999999999999999999999984
No 365
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.13 E-value=0.028 Score=49.93 Aligned_cols=35 Identities=31% Similarity=0.363 Sum_probs=29.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
+.++|+|||+|.++.-+|..|++.|.+|+++=|++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 56889999999999999999999999999998854
No 366
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.05 E-value=0.03 Score=52.75 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=31.3
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
..+|+|||+|.-|..-|..|+++|++|+++|.++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3579999999999999999999999999999954
No 367
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.03 E-value=0.083 Score=54.58 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=35.6
Q ss_pred cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecChh
Q 039105 238 DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLG 279 (493)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~~ 279 (493)
|+++++++..++|...+.-..|..++|..+.||.||+|+...
T Consensus 201 Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIr 242 (793)
T COG1251 201 GIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIR 242 (793)
T ss_pred cceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccc
Confidence 889999999998887444467999999999999999999643
No 368
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.97 E-value=0.032 Score=52.69 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=30.3
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
.+|+|||+|.-|.+.|..|+++|++|.+++.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 57999999999999999999999999999984
No 369
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.95 E-value=0.033 Score=56.44 Aligned_cols=34 Identities=38% Similarity=0.635 Sum_probs=31.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
.+.|+|||+|..|+.+|..|+++|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4789999999999999999999999999999964
No 370
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.94 E-value=0.04 Score=52.26 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=31.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
+..+|+|||+|.-|...|..|+++|++|.+++++
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3467999999999999999999999999999985
No 371
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.92 E-value=0.038 Score=52.67 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=31.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
+..+|+|||+|.-|..-|..++++|++|.++|..+
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 34679999999999999999999999999999854
No 372
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.84 E-value=0.047 Score=46.69 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=31.6
Q ss_pred CCCCcEEEECcCH-HHHHHHHHHHhCCCcEEEEeeC
Q 039105 26 GSLPSVIVIGGGI-SGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 26 ~~~~dv~IIGaGi-aGLsaA~~L~~~G~~V~v~E~~ 60 (493)
-..++|+|||+|- +|..+|.+|.+.|.+|.|..++
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 4678999999995 7999999999999999999985
No 373
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.83 E-value=0.073 Score=52.75 Aligned_cols=77 Identities=29% Similarity=0.356 Sum_probs=50.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeec-cCCCCceeeccccee------------eCCCCCCchH
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHT-DYSFGCPVDMGASWL------------HGVCNENPLA 94 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s-~~~~g~~~d~G~~~~------------~~~~~~~~~~ 94 (493)
.++|+|+|-|.+|++||..|.+.|++|++.|.++.+=+.... ....+..+..|.|.. ++....+++.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~v 86 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPLV 86 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHHH
Confidence 688999999999999999999999999999976655111111 112344455543221 1222334566
Q ss_pred HHHHHhCCce
Q 039105 95 PLIRRLGLTL 104 (493)
Q Consensus 95 ~l~~~lg~~~ 104 (493)
+..+..|++.
T Consensus 87 ~~A~~~gi~i 96 (448)
T COG0771 87 EAAKAAGIEI 96 (448)
T ss_pred HHHHHcCCcE
Confidence 6677777763
No 374
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.79 E-value=0.018 Score=51.58 Aligned_cols=32 Identities=34% Similarity=0.647 Sum_probs=27.4
Q ss_pred cEEEECcCHHHHHHHHHHHhC--CCcEEEEeeCC
Q 039105 30 SVIVIGGGISGLAAARILYDA--SFKVVLLESRD 61 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~--G~~V~v~E~~~ 61 (493)
+.+||||||||.+||-.|+.. ..+|+++-+++
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 368999999999999999975 56899888854
No 375
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.67 E-value=0.055 Score=51.83 Aligned_cols=35 Identities=31% Similarity=0.404 Sum_probs=31.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
+..+|+|||+|.-|.+.|+.|+++|++|+++.++.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34579999999999999999999999999998853
No 376
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.63 E-value=0.045 Score=49.48 Aligned_cols=65 Identities=18% Similarity=0.339 Sum_probs=45.4
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCCCceeeccCCCCceeecccceeeCCCCCCchHHHHHHhCCc
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLT 103 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (493)
++++|||+|--|.+.|..|.+.|++|+++|+++.. +.... .-+.+.+.+. .+..-.+.|+++|++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~---~~~~~----~~~~~~~~v~---gd~t~~~~L~~agi~ 65 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER---VEEFL----ADELDTHVVI---GDATDEDVLEEAGID 65 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH---HHHHh----hhhcceEEEE---ecCCCHHHHHhcCCC
Confidence 46999999999999999999999999999996532 11100 0113344443 233446778888887
No 377
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.59 E-value=0.042 Score=51.98 Aligned_cols=33 Identities=21% Similarity=0.520 Sum_probs=30.5
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
.+|+|||+|.-|...|..|+++|++|.+++.++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 469999999999999999999999999999853
No 378
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.51 E-value=0.57 Score=48.95 Aligned_cols=49 Identities=10% Similarity=0.066 Sum_probs=34.4
Q ss_pred HHHHHHh-hcCCccccceeEEEEec-CCcE-EEE---EcCCc--EEEcCEEEEecCh
Q 039105 230 PVIKALS-KDIDIRLNQRVTKISNG-CNKV-MVT---VEDGR--NFVADAAIVTVPL 278 (493)
Q Consensus 230 ~l~~~L~-~gv~i~~~~~V~~I~~~-~~~v-~V~---~~~G~--~~~ad~VI~a~~~ 278 (493)
.+.+++. .|++|+.++.++++..+ ++++ .|. ..+|+ .+.|+.||+|++-
T Consensus 131 ~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 187 (570)
T PRK05675 131 TLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGG 187 (570)
T ss_pred HHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCC
Confidence 3444333 38899999999999875 5554 333 24665 4789999999963
No 379
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.50 E-value=0.057 Score=51.26 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=32.4
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
.+..+|.|||+|.-|...|..|+++|++|.++|++.
T Consensus 2 ~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 2 AEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 455679999999999999999999999999999853
No 380
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.50 E-value=0.08 Score=43.61 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=31.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCc-EEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFK-VVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~-V~v~E~~ 60 (493)
+...++|||||=+|-++++.|.+.|.+ |+|+-|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 568899999999999999999999987 9999884
No 381
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=94.42 E-value=0.035 Score=51.26 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=31.9
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhC-CC-cEEEEeeCC
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDA-SF-KVVLLESRD 61 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~-G~-~V~v~E~~~ 61 (493)
.+++++|+|||||-+|++.|..+.++ |. +|.|+|-.+
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 45789999999999999999999987 54 799998754
No 382
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.36 E-value=0.06 Score=51.57 Aligned_cols=36 Identities=22% Similarity=0.484 Sum_probs=32.0
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
.+..+|.|||+|.-|.+.|..|+++|++|.+++.+.
T Consensus 2 ~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 2 NPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 345679999999999999999999999999999853
No 383
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.34 E-value=0.067 Score=50.99 Aligned_cols=33 Identities=24% Similarity=0.164 Sum_probs=30.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
..+|+|||+|.-|...|++|++.|.+|+++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 357999999999999999999999999999995
No 384
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.27 E-value=0.068 Score=51.60 Aligned_cols=36 Identities=28% Similarity=0.229 Sum_probs=32.3
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
+++.+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus 2 ~~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 2 HHGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 345689999999999999999999999999999953
No 385
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.16 E-value=0.067 Score=51.98 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=30.2
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
.+|+|||+|.-|.+.|..|+++|++|++++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 57999999999999999999999999999984
No 386
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.16 E-value=0.061 Score=51.55 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=30.5
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
++|.|||+|..||+.|..|++.|++|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 468999999999999999999999999999853
No 387
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.15 E-value=0.077 Score=50.46 Aligned_cols=33 Identities=30% Similarity=0.483 Sum_probs=30.0
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCC-cEEEEeeCC
Q 039105 29 PSVIVIGGGISGLAAARILYDASF-KVVLLESRD 61 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~-~V~v~E~~~ 61 (493)
.+|+|||+|..|.+.|+.|+.+|+ +|.++|..+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 579999999999999999999886 899999854
No 388
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.14 E-value=0.064 Score=50.56 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=30.2
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
.+|+|||+|.-|.+.|..|+++|++|+++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCC
Confidence 57999999999999999999999999999985
No 389
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.10 E-value=0.072 Score=54.96 Aligned_cols=36 Identities=39% Similarity=0.350 Sum_probs=32.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
+..+|+|||||.+|+-+|..|++.|.+|+|+++.+.
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 456899999999999999999999999999998543
No 390
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.09 E-value=0.082 Score=47.00 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=31.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
+...|+|||||-+|+..|..|.+.|.+|+|+....
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 34689999999999999999999999999997653
No 391
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.07 E-value=0.062 Score=41.90 Aligned_cols=34 Identities=32% Similarity=0.505 Sum_probs=31.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
+...|+|||||-.|..-+..|.+.|.+|+|+...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 5678999999999999999999999999999886
No 392
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.96 E-value=0.077 Score=50.58 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=29.5
Q ss_pred cEEEECcCHHHHHHHHHHHhCC--CcEEEEeeCC
Q 039105 30 SVIVIGGGISGLAAARILYDAS--FKVVLLESRD 61 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G--~~V~v~E~~~ 61 (493)
+|+|||+|..|.++|+.|+++| .+|.++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 6999999999999999999999 5799999864
No 393
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.94 E-value=0.08 Score=55.12 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=33.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDRL 63 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~~ 63 (493)
...+|+|||||.+|+-.|..|++.|.+|+|+++.+++
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 3578999999999999999999999999999997753
No 394
>PRK10262 thioredoxin reductase; Provisional
Probab=93.92 E-value=0.09 Score=50.62 Aligned_cols=35 Identities=34% Similarity=0.456 Sum_probs=32.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
...+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 45689999999999999999999999999999964
No 395
>PRK04148 hypothetical protein; Provisional
Probab=93.88 E-value=0.063 Score=43.63 Aligned_cols=34 Identities=18% Similarity=0.408 Sum_probs=30.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
..++++||.| .|.+.|..|++.|++|+.+|-++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 4679999999 999999999999999999998654
No 396
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.88 E-value=0.075 Score=50.33 Aligned_cols=33 Identities=18% Similarity=0.494 Sum_probs=30.6
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
.+|+|||+|.-|...|..|+++|++|.++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 569999999999999999999999999999853
No 397
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=93.87 E-value=0.086 Score=53.33 Aligned_cols=35 Identities=34% Similarity=0.407 Sum_probs=32.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
...+|+|||||..|+-+|..|.+.|.+|+|+++.+
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 44689999999999999999999999999999854
No 398
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.84 E-value=0.087 Score=51.57 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=31.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
+..+|+|||+|.+|+.+|..|.+.|.+|.+++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 4577999999999999999999999999999984
No 399
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.83 E-value=0.079 Score=50.51 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=29.4
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
+|+|||+|..|...|..|+++|++|+++.++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 5999999999999999999999999999984
No 400
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.81 E-value=0.065 Score=49.39 Aligned_cols=34 Identities=32% Similarity=0.528 Sum_probs=32.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
.+-+|+|||+|+.|.-||....--|.+|+|+|.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 5678999999999999999999999999999997
No 401
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.79 E-value=0.083 Score=50.42 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=28.8
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEee
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLES 59 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~ 59 (493)
+|+|||+|.-|.+.|..|+++|++|+++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999987
No 402
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.74 E-value=0.073 Score=53.07 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=31.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
+.+|.|||.|..|++.|..|+++|++|.+++.+.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 3679999999999999999999999999999864
No 403
>PRK12831 putative oxidoreductase; Provisional
Probab=93.62 E-value=0.1 Score=52.94 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=32.3
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
....+|+|||||..|+-+|..|.+.|.+|+|+++.+
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 345789999999999999999999999999999853
No 404
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.49 E-value=0.091 Score=53.38 Aligned_cols=34 Identities=26% Similarity=0.056 Sum_probs=31.3
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
.++|+|+|.|.+|.+||..|.+.|.+|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 4679999999999999999999999999999754
No 405
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.39 E-value=0.12 Score=50.39 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=30.1
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCc-EEEEeeC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFK-VVLLESR 60 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~-V~v~E~~ 60 (493)
...++|||+|..|+-+|..|.+.|.+ |+|+++.
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 35799999999999999999999987 9999984
No 406
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.36 E-value=0.12 Score=45.70 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=31.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASF-KVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~-~V~v~E~~ 60 (493)
+..+|+|||+|--|..+|..|++.|+ +++|+|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 55789999999999999999999998 59999984
No 407
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.34 E-value=0.11 Score=52.77 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=33.1
Q ss_pred hhcCCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 22 RAQIGSLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 22 ~~~~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
+.+.-....|+|+|.|-+|+++|..|.++|.+|.+.|+.
T Consensus 9 ~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 9 ALPQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred hcccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 333345567999999999999999999999999999974
No 408
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.29 E-value=0.14 Score=45.43 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=31.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
+.+.|+|||||-.|...|..|.+.|.+|+|++..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4578999999999999999999999999999763
No 409
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=93.23 E-value=0.13 Score=48.70 Aligned_cols=35 Identities=37% Similarity=0.454 Sum_probs=31.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
...+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 34689999999999999999999999999999953
No 410
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.14 E-value=0.14 Score=43.82 Aligned_cols=34 Identities=29% Similarity=0.359 Sum_probs=29.0
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
|.+|.|||-|..|...|.+|.++|++|.+++++.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 4689999999999999999999999999999853
No 411
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.12 E-value=0.12 Score=52.54 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=31.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
..+|+|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 4679999999999999999999999999999864
No 412
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.07 E-value=0.13 Score=49.49 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=30.3
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
.+|.|||+|.-|...|..|++.|++|.+++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 47999999999999999999999999999985
No 413
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.96 E-value=0.16 Score=48.45 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=31.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
+..+|.|||+|.-|.+.|..|+++|++|.++.++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 44679999999999999999999999999999854
No 414
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=92.94 E-value=0.76 Score=45.26 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=34.8
Q ss_pred cCCccccceeEEEEecCCcEEEEEcCCcEEEcCEEEEecCh
Q 039105 238 DIDIRLNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPL 278 (493)
Q Consensus 238 gv~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~a~~~ 278 (493)
|+++++++.|+++....+ +|.+.+|++++++++|+|++.
T Consensus 141 gIe~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 141 GIELILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred CceEEEcceeEEeecccc--EEEeCCCceeecceEEEeecC
Confidence 778999999999988765 677789999999999999986
No 415
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.90 E-value=0.11 Score=51.87 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=30.6
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
+|.|||.|..|+..|..|+++|++|.+++++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998643
No 416
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.81 E-value=0.14 Score=52.02 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=31.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
+..+|+|+|+|.+||.|+..+...|.+|.++|.+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~ 197 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTR 197 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5678999999999999999999999999999984
No 417
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.78 E-value=0.16 Score=51.30 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=31.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
.+.|+|+|+|-+|+++|..|+++|++|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 45799999999999999999999999999998654
No 418
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.73 E-value=0.13 Score=52.27 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=32.7
Q ss_pred CCCCCcEEEECcCHHHHH-HHHHHHhCCCcEEEEeeCCC
Q 039105 25 IGSLPSVIVIGGGISGLA-AARILYDASFKVVLLESRDR 62 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLs-aA~~L~~~G~~V~v~E~~~~ 62 (493)
+.+.+.|+|||.|-+|++ +|..|.++|++|++.|.+..
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 345567999999999999 59999999999999998643
No 419
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=92.70 E-value=0.11 Score=45.49 Aligned_cols=39 Identities=21% Similarity=0.463 Sum_probs=35.3
Q ss_pred hcCCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 23 AQIGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 23 ~~~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
.++.+...|.|||||.-|.-.|--.+..|++|.+++++.
T Consensus 6 ~~~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 6 ANMAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cccccccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 346788899999999999999999999999999999964
No 420
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.70 E-value=0.15 Score=52.10 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=30.7
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
.+|.|||+|.-|..-|..|+++|++|+|+++++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999999863
No 421
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.68 E-value=0.16 Score=49.34 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=31.0
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCC-CcEEEEeeC
Q 039105 28 LPSVIVIGGGISGLAAARILYDAS-FKVVLLESR 60 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G-~~V~v~E~~ 60 (493)
+.+|+|||||-.|.++|+.|++.| .+|+|.+|+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 468999999999999999999998 899999996
No 422
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.63 E-value=0.16 Score=51.91 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=30.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
....|+|+|.|.+|+++|..|.+.|.+|++.|.+
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3467999999999999999999999999999964
No 423
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.59 E-value=0.21 Score=42.33 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=29.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEe
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLE 58 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E 58 (493)
+...|+|||||-.|+.-|..|.+.|++|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 56789999999999999999999999999994
No 424
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.51 E-value=0.16 Score=51.44 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=31.0
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
...++|+|+|-+|+++|..|++.|++|.+.|++.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4579999999999999999999999999999754
No 425
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.48 E-value=0.22 Score=47.68 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=33.0
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeeCCC
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASF-KVVLLESRDR 62 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~-~V~v~E~~~~ 62 (493)
|-+..+|+|||||-.|.+.|+.|+..|+ +|.++|.++.
T Consensus 3 ~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 3 MIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3455789999999999999999999995 8999998654
No 426
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.46 E-value=0.16 Score=51.31 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=29.4
Q ss_pred CcEEEECcCHHHHHHHHHHHhCC--CcEEEEeeCC
Q 039105 29 PSVIVIGGGISGLAAARILYDAS--FKVVLLESRD 61 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G--~~V~v~E~~~ 61 (493)
++|+|||+|..|+..|..|+++| ++|+.+|.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 57999999999999999999985 7899999753
No 427
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.43 E-value=0.16 Score=51.38 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=29.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
..++|+|+|.|.+|.+||..|.+ |.+|+|.|..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 45679999999999999999995 9999999964
No 428
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.36 E-value=0.21 Score=47.77 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=30.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeeCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASF-KVVLLESRD 61 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~-~V~v~E~~~ 61 (493)
+.+|+|||||..|.+.|+.|+..|. +|.++|.+.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 3689999999999999999999875 999999854
No 429
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.31 E-value=0.28 Score=36.70 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=30.5
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhC-CCcEEEEee
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDA-SFKVVLLES 59 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~-G~~V~v~E~ 59 (493)
.+..+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4567899999999999999999998 678999988
No 430
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.21 E-value=0.22 Score=47.10 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=32.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
...+++|||+|.+|..+|..|.+.|.+|.+++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 56889999999999999999999999999999863
No 431
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=92.20 E-value=0.21 Score=47.01 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=31.5
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeeC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASF-KVVLLESR 60 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~-~V~v~E~~ 60 (493)
.+.++|+|||+|-+|-++|+.|++.|. +|+|++++
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 355789999999999999999999997 79999985
No 432
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=0.12 Score=48.35 Aligned_cols=34 Identities=44% Similarity=0.388 Sum_probs=29.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
+.+||+|||||-+|+-||..|+--=..|+++|=.
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~ 386 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA 386 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecc
Confidence 5688999999999999999998554578888863
No 433
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=92.09 E-value=0.22 Score=51.00 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=32.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
+-.+|.|||+|.-|...|..|+++|++|.++|++..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 446799999999999999999999999999997643
No 434
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.04 E-value=0.21 Score=50.97 Aligned_cols=35 Identities=31% Similarity=0.494 Sum_probs=31.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
+-.+|.|||+|.-|...|..|+++|++|.++|++.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 34569999999999999999999999999999864
No 435
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.02 E-value=0.22 Score=48.08 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=29.5
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
+|.|||||.-|.+.|..|+++|++|.++.++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 5999999999999999999999999999985
No 436
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.69 E-value=0.28 Score=44.34 Aligned_cols=34 Identities=29% Similarity=0.587 Sum_probs=30.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCC---cEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASF---KVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~---~V~v~E~~ 60 (493)
+..+++|+|||-+|..+|..|.+.|. +|.|++++
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 45689999999999999999999997 49999985
No 437
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.63 E-value=0.27 Score=48.53 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=32.5
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
-....|+|+|+|..|+.+|..|...|.+|.++|.++
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 356789999999999999999999999999999854
No 438
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.58 E-value=0.3 Score=46.51 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=30.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCC--cEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASF--KVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~--~V~v~E~~~ 61 (493)
++.+|+|||||-.|.++|+.|+..|. ++.|+|.+.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 46799999999999999999998875 699999854
No 439
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=91.57 E-value=0.28 Score=53.21 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=31.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCc-EEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFK-VVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~-V~v~E~~~ 61 (493)
...+|+|||||..|+-+|..|.+.|.+ |+|+++.+
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 457899999999999999999999987 99999853
No 440
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.55 E-value=0.24 Score=46.54 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=29.7
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
+|.|||.|.-|.+.|..|.++|++|.+++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 59999999999999999999999999999853
No 441
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.38 E-value=0.28 Score=46.73 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=29.3
Q ss_pred cEEEECcCHHHHHHHHHHHhCC--CcEEEEeeCC
Q 039105 30 SVIVIGGGISGLAAARILYDAS--FKVVLLESRD 61 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G--~~V~v~E~~~ 61 (493)
+|+|||+|-.|.+.|+.|+.+| .++.+++++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 6999999999999999999998 4799999864
No 442
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.36 E-value=0.25 Score=50.80 Aligned_cols=34 Identities=35% Similarity=0.473 Sum_probs=31.0
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
...|.|||.|.+|+++|..|.++|++|.+.|...
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 4579999999999999999999999999999754
No 443
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.15 E-value=0.32 Score=49.28 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=31.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
+..+|+|+|+|..|+.++..+...|.+|.++|.+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~ 196 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTR 196 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4578999999999999999999999999999985
No 444
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.11 E-value=0.36 Score=42.76 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=31.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
+.+.++|+|.|-.|..+|..|.+.|++|.+.|.+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4567999999999999999999999999999875
No 445
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.98 E-value=0.32 Score=49.28 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=32.9
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
|+..--|+|||.|-+|+++|..|.++|++|++.|..+
T Consensus 3 ~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 3 MQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred cccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 5555679999999999999999999999999999754
No 446
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.96 E-value=0.26 Score=40.55 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=29.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeeC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASF-KVVLLESR 60 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~-~V~v~E~~ 60 (493)
..+|+|||+|-.|...|..|++.|. +++|+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4689999999999999999999997 69999983
No 447
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=90.83 E-value=0.32 Score=47.94 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=28.0
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
+|.|||.|..|+..|..|++ |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 59999999999999988875 99999999864
No 448
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.64 E-value=0.49 Score=39.24 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=29.2
Q ss_pred CcEEEECc-CHHHHHHHHHHHhCCC--cEEEEeeCC
Q 039105 29 PSVIVIGG-GISGLAAARILYDASF--KVVLLESRD 61 (493)
Q Consensus 29 ~dv~IIGa-GiaGLsaA~~L~~~G~--~V~v~E~~~ 61 (493)
.+|+|||| |-.|.+.|+.|...+. ++.++|..+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 37999999 9999999999999864 699999963
No 449
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.61 E-value=0.33 Score=52.05 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=31.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
-.+|+|||||.-|-..|..++++|++|.++|.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999864
No 450
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=90.55 E-value=0.66 Score=45.84 Aligned_cols=33 Identities=36% Similarity=0.594 Sum_probs=31.4
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
+|++|||||++|+++|+.|+++|++|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 689999999999999999999999999999964
No 451
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.49 E-value=0.41 Score=45.06 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=32.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
....++|||+|-.|.+.|..|...|.+|.+++++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45789999999999999999999999999999864
No 452
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=90.46 E-value=0.35 Score=51.77 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=32.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
+-.+|+|||||.-|-..|+.++.+|++|.++|.+.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 45679999999999999999999999999999864
No 453
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=90.37 E-value=0.42 Score=44.66 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=31.4
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
.+...++|+|+|-+|.++|+.|++.|.+|.|+.++
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34578999999999999999999999999999875
No 454
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.37 E-value=0.44 Score=44.11 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=30.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCC-CcEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDAS-FKVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G-~~V~v~E~~ 60 (493)
+...|+|||+|-.|..+|..|++.| -+++|+|..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5678999999999999999999999 479999984
No 455
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.35 E-value=0.4 Score=46.24 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=31.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASF-KVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~-~V~v~E~~ 60 (493)
+..+|+|||+|-.|..+|..|++.|+ +++|+|..
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45779999999999999999999998 79999984
No 456
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.35 E-value=0.51 Score=37.49 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=27.9
Q ss_pred EEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 31 VIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 31 v~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
|+|+|.|-.|...|-.|.+.+.+|+++|.++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 6899999999999999999878999999965
No 457
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.31 E-value=0.46 Score=45.57 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=31.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCC-CcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDAS-FKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G-~~V~v~E~~~ 61 (493)
++.+|+|||||-.|.+.|+.|+..| .++.++|.++
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4578999999999999999999998 5899999864
No 458
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.20 E-value=0.51 Score=45.11 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=31.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCC--cEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASF--KVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~--~V~v~E~~~ 61 (493)
.+.+|+|||||-.|-++|+.|+..|. ++.++|.+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 45789999999999999999999986 799999854
No 459
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=90.16 E-value=0.4 Score=45.12 Aligned_cols=33 Identities=33% Similarity=0.519 Sum_probs=30.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
..+|.|||||.-|-.-|+.++..|++|.++|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 467999999999999999999988999999996
No 460
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.15 E-value=0.38 Score=48.18 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=30.2
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
.+|+|||-|.+|+++|..|.++|++|.+.|.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 469999999999999999999999999999753
No 461
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.13 E-value=0.34 Score=49.22 Aligned_cols=33 Identities=36% Similarity=0.409 Sum_probs=30.2
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
..+|.|||.|-+|+++|..|.+.|++|.+.|..
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 357999999999999999999999999999964
No 462
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=90.13 E-value=0.44 Score=42.95 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=28.2
Q ss_pred cEEEEC-cCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 30 SVIVIG-GGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 30 dv~IIG-aGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
+|.||| +|.-|.+.|..|+++|++|.++.++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 599997 7999999999999999999998763
No 463
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=90.03 E-value=0.36 Score=45.88 Aligned_cols=31 Identities=32% Similarity=0.499 Sum_probs=28.3
Q ss_pred EEEECcCHHHHHHHHHHHhCCC-cEEEEeeCC
Q 039105 31 VIVIGGGISGLAAARILYDASF-KVVLLESRD 61 (493)
Q Consensus 31 v~IIGaGiaGLsaA~~L~~~G~-~V~v~E~~~ 61 (493)
|+|||||..|.+.|+.|+.+|. +|.++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5899999999999999999876 999999864
No 464
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.02 E-value=0.47 Score=45.78 Aligned_cols=34 Identities=32% Similarity=0.510 Sum_probs=31.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASF-KVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~-~V~v~E~~ 60 (493)
...+|+|||+|--|-.+|..|++.|+ +++|+|..
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 56789999999999999999999998 89999983
No 465
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=90.02 E-value=0.35 Score=46.00 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=29.2
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
.+|+|+|+|.-|...|+.|+++|.+|+++=+.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 369999999999999999999998888887754
No 466
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=89.94 E-value=0.52 Score=41.55 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=30.3
Q ss_pred CCCcEEEECc-CHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 27 SLPSVIVIGG-GISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGa-GiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
+..+++|+|| |-.|..+|..|++.|.+|.++.++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999997 999999999999999999999774
No 467
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=89.83 E-value=0.42 Score=40.23 Aligned_cols=37 Identities=30% Similarity=0.282 Sum_probs=28.8
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
+-..+.++|+|=|..|-.+|..|...|.+|+|.|..+
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 4567789999999999999999999999999999954
No 468
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=89.72 E-value=0.58 Score=44.19 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=30.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCc-EEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFK-VVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~-V~v~E~~ 60 (493)
+.+.++|+|||=+|.++|+.|++.|.+ |.|+.|+
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 456799999999999999999999986 9999885
No 469
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=89.64 E-value=0.4 Score=52.44 Aligned_cols=36 Identities=28% Similarity=0.235 Sum_probs=32.0
Q ss_pred CCCCcEEEECcCHHHHHH-HHHHHhCCCcEEEEeeCC
Q 039105 26 GSLPSVIVIGGGISGLAA-ARILYDASFKVVLLESRD 61 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsa-A~~L~~~G~~V~v~E~~~ 61 (493)
.....+.|||.|-+|+++ |..|.++|++|++.|.+.
T Consensus 2 ~~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~ 38 (809)
T PRK14573 2 MKSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSE 38 (809)
T ss_pred CCcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCC
Confidence 344579999999999999 999999999999999754
No 470
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=89.62 E-value=0.48 Score=52.38 Aligned_cols=35 Identities=31% Similarity=0.368 Sum_probs=31.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
...+|+|||||.+|+-||..+.+.|.+|+++.+.+
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 35789999999999999999999999999998864
No 471
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=89.50 E-value=0.48 Score=46.53 Aligned_cols=35 Identities=29% Similarity=0.473 Sum_probs=31.7
Q ss_pred CCCCcEEEEC-cCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 26 GSLPSVIVIG-GGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 26 ~~~~dv~IIG-aGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
+....|+||| .|.-|-+.|..|.++|++|.+++++
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 3557799999 8999999999999999999999984
No 472
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.47 E-value=0.61 Score=40.27 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=28.5
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCc-EEEEeeC
Q 039105 30 SVIVIGGGISGLAAARILYDASFK-VVLLESR 60 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~-V~v~E~~ 60 (493)
+|+|||+|-.|-..|..|++.|.. ++|+|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 489999999999999999999984 9999984
No 473
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=89.47 E-value=0.4 Score=51.47 Aligned_cols=35 Identities=26% Similarity=0.500 Sum_probs=31.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
+-..|.|||||.-|...|+.++.+|++|.++|.++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 44569999999999999999999999999999864
No 474
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=89.46 E-value=0.63 Score=41.63 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=30.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCc-EEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFK-VVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~-V~v~E~~ 60 (493)
+..+|+|||+|-.|..+|..|++.|.. ++|+|..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 567899999999999999999999975 9999984
No 475
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=89.44 E-value=0.41 Score=48.44 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=31.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
+.++|+|||+|.+|+=.|..|++.+.+|+++.+.
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 4578999999999999999999999999999884
No 476
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=89.44 E-value=0.42 Score=51.07 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=31.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHH-hCCCcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILY-DASFKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~-~~G~~V~v~E~~~ 61 (493)
+..+|+|||||.-|...|..++ ++|++|.++|.++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 4467999999999999999998 5899999999864
No 477
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.43 E-value=0.59 Score=46.03 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=32.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
.....|+|||.|..|..+|..|...|.+|.++|..+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 467789999999999999999999999999999854
No 478
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=89.26 E-value=0.49 Score=44.89 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=30.4
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
.+|.|||.|.-|...|..|+++|++|.+++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 479999999999999999999999999999853
No 479
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=89.25 E-value=0.44 Score=45.08 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=29.6
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
+|.|||.|.-|...|..|++.|++|.+++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48999999999999999999999999999853
No 480
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=89.23 E-value=0.63 Score=41.31 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=30.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASF-KVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~-~V~v~E~~ 60 (493)
...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 56789999999999999999999997 79999983
No 481
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=89.08 E-value=0.47 Score=47.90 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=31.9
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRDR 62 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~~ 62 (493)
+.+|.|||.|.-|...|..|+++|++|.+++++..
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 35899999999999999999999999999998643
No 482
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=89.08 E-value=0.7 Score=38.92 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=30.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCC-CcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDAS-FKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G-~~V~v~E~~~ 61 (493)
+..+++|||+|..|.+.|..|.+.| .+|.+++++.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 4578999999999999999999986 7899998853
No 483
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=89.05 E-value=1.2 Score=41.39 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=30.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASF-KVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~-~V~v~E~~~ 61 (493)
....++|+|||=++-++++.|++.|. +|.|+.|+.
T Consensus 121 ~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 121 PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 34579999999999999999999996 599999864
No 484
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.78 E-value=0.49 Score=50.71 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=31.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHH-hCCCcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILY-DASFKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~-~~G~~V~v~E~~~ 61 (493)
+-.+|+|||||..|-..|+.++ +.|++|+++|.+.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 3467999999999999999999 8899999999853
No 485
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=88.76 E-value=0.67 Score=43.49 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=31.4
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHhCC-CcEEEEeeC
Q 039105 26 GSLPSVIVIGGGISGLAAARILYDAS-FKVVLLESR 60 (493)
Q Consensus 26 ~~~~dv~IIGaGiaGLsaA~~L~~~G-~~V~v~E~~ 60 (493)
.....++|+|+|=+|.++|+.|++.| .+|+|+.|+
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 35578999999999999999999999 789999885
No 486
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.73 E-value=0.57 Score=47.27 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=30.9
Q ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 28 LPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 28 ~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
.+.|.|||-|-+|++++..|+++|++|++.|...
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4579999999999999999999999999999754
No 487
>PLN02256 arogenate dehydrogenase
Probab=88.49 E-value=0.84 Score=43.36 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=32.1
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 25 IGSLPSVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 25 ~~~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
..+..+|.|||.|.-|-+.|..|.+.|++|.+++++
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~ 68 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRS 68 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECc
Confidence 446678999999999999999999999999999875
No 488
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=88.29 E-value=0.72 Score=44.05 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=28.9
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCC--cEEEEeeC
Q 039105 29 PSVIVIGGGISGLAAARILYDASF--KVVLLESR 60 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~--~V~v~E~~ 60 (493)
.+|+|||+|..|.+.|..|.+.|+ +|.+++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 579999999999999999999985 79999885
No 489
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=88.22 E-value=0.76 Score=43.19 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=30.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASF-KVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~-~V~v~E~~ 60 (493)
+.++++|||||=+|-++|+.|.+.|. +|+|+.|+
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46789999999999999999999996 69999885
No 490
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=88.18 E-value=0.71 Score=47.06 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=31.5
Q ss_pred ccCceEEeeccccCcCcchhHHHHHHHHHHHHHHHHHHHh
Q 039105 425 PLGNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQKYLLK 464 (493)
Q Consensus 425 ~~~~l~~aGd~~~~~~~g~~egA~~sg~~aa~~i~~~l~~ 464 (493)
..+|+|.+||.+.. +..+..|+..|..||..|...|..
T Consensus 429 s~~gVfa~GD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 429 SNPKVFAAGDMRRG--QSLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred CCCCEEEccccCCC--chhHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999753 346778999999999999998864
No 491
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=88.11 E-value=0.74 Score=45.65 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=32.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
....|+|||.|..|..+|..|...|.+|+++|..+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 56789999999999999999999999999999854
No 492
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=88.03 E-value=0.81 Score=41.80 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=30.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeeC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASF-KVVLLESR 60 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~-~V~v~E~~ 60 (493)
+..+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45789999999999999999999996 68888883
No 493
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=88.02 E-value=0.73 Score=43.71 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=30.3
Q ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 29 PSVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 29 ~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
.+|.|||.|.-|...|..|++.|++|.+++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 479999999999999999999999999998853
No 494
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.99 E-value=0.75 Score=43.74 Aligned_cols=32 Identities=25% Similarity=0.493 Sum_probs=28.5
Q ss_pred cEEEECcCHHHHHHHHHHHhCCC--cEEEEeeCC
Q 039105 30 SVIVIGGGISGLAAARILYDASF--KVVLLESRD 61 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~--~V~v~E~~~ 61 (493)
+|+|||+|-.|.++|+.|..+|. ++.|+|.+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 58999999999999999999875 699999753
No 495
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=87.98 E-value=0.84 Score=46.67 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=30.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCC-CcEEEEeeCCC
Q 039105 27 SLPSVIVIGGGISGLAAARILYDAS-FKVVLLESRDR 62 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G-~~V~v~E~~~~ 62 (493)
....|+|||||..|+-+|..+.+.| .+|+++|..++
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 4578999999999999998888887 57999998654
No 496
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=87.83 E-value=0.9 Score=40.70 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=29.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASFKVVLLES 59 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~ 59 (493)
+...|+|||||-.++.=+..|.+.|.+|+|+-.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap 56 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSK 56 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 457899999999999999999999999999943
No 497
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.83 E-value=0.61 Score=46.27 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=27.7
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeC
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESR 60 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~ 60 (493)
.|+|+|.|-+|+++|..|. +|.+|++.|..
T Consensus 2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~ 31 (401)
T PRK03815 2 KISLFGYGKTTKALAKFLK-KFGGVDIFDDK 31 (401)
T ss_pred eEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence 5899999999999999999 99999999953
No 498
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=87.82 E-value=0.86 Score=37.85 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=28.5
Q ss_pred cEEEECcCHHHHHHHHHHHhCCC-cEEEEeeC
Q 039105 30 SVIVIGGGISGLAAARILYDASF-KVVLLESR 60 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~-~V~v~E~~ 60 (493)
+|+|||+|-.|...|..|++.|. +++|+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 48999999999999999999997 69999984
No 499
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=87.66 E-value=0.65 Score=46.79 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=29.3
Q ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeeCC
Q 039105 30 SVIVIGGGISGLAAARILYDASFKVVLLESRD 61 (493)
Q Consensus 30 dv~IIGaGiaGLsaA~~L~~~G~~V~v~E~~~ 61 (493)
++.|||.|-+|+++|..|.++|++|++.|...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~ 32 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKP 32 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCC
Confidence 37899999999999999999999999999754
No 500
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=87.66 E-value=0.84 Score=41.88 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=30.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHhCCC-cEEEEee
Q 039105 27 SLPSVIVIGGGISGLAAARILYDASF-KVVLLES 59 (493)
Q Consensus 27 ~~~dv~IIGaGiaGLsaA~~L~~~G~-~V~v~E~ 59 (493)
+..+|+|||+|-.|..+|..|++.|. +++|+|.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~ 64 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDF 64 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 56889999999999999999999996 6999888
Done!