BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039109
(233 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|147811718|emb|CAN77256.1| hypothetical protein VITISV_008352 [Vitis vinifera]
Length = 1365
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/124 (68%), Positives = 94/124 (75%), Gaps = 3/124 (2%)
Query: 41 QKYTFGHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSIS 100
+KYT GHKCKKLF IE EE E E++ +ETP ISLHALA VQSPQTM++ S I
Sbjct: 546 EKYTMGHKCKKLFFIELEEE---NEESIEEEYVEETPTISLHALAGVQSPQTMQIHSQIG 602
Query: 101 KASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQG 160
K LTILIDSGSTHNFLHHKFAKI GLKSE CL SVVVANGE+L+S GRC GV+L LQ
Sbjct: 603 KTPLTILIDSGSTHNFLHHKFAKIIGLKSERSCLFSVVVANGERLSSLGRCNGVKLFLQD 662
Query: 161 TQIE 164
IE
Sbjct: 663 IPIE 666
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 12 LLARAGHLTDKQEAECFISGLKDGLRTD 39
LLARA LTDKQEAECFIS LKDGLR D
Sbjct: 457 LLARANTLTDKQEAECFISRLKDGLRAD 484
>gi|147843077|emb|CAN83300.1| hypothetical protein VITISV_044100 [Vitis vinifera]
Length = 1366
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 117/206 (56%), Gaps = 14/206 (6%)
Query: 42 KYTFGHKCK--KLFLIEAEEGDE---PK---------EHEKEKDVTQETPAISLHALARV 87
K+ GHKCK +LF++E +E + PK + ++E + + P IS+HAL
Sbjct: 264 KWAPGHKCKSXRLFIMECDESSDDEVPKSEVAEGRASKSKEETPIVEIEPGISIHALVGS 323
Query: 88 QSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTS 147
+P+TMR I ++ IL+D+GSTHNF+ + L S P LSV VANG+ + S
Sbjct: 324 PNPKTMRFLGHICGRAVVILVDTGSTHNFMDPSVIQRAHLPSNPTEGLSVKVANGQAVRS 383
Query: 148 PGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQ 207
G C V L +QG FY+L+L GCD VLG QWL TLG ILWDF +++M+F+
Sbjct: 384 EGSCAAVPLHMQGNLYTIDFYILTLGGCDIVLGVQWLQTLGPILWDFSRLQMEFSVWDKP 443
Query: 208 VTLRGATTSELKAIEGDTIQKTLRKN 233
L+G + + + +EG+ K R+N
Sbjct: 444 RKLQGMSPTGISLVEGEKFGKVSRQN 469
>gi|147789424|emb|CAN66607.1| hypothetical protein VITISV_017554 [Vitis vinifera]
Length = 2822
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 115/206 (55%), Gaps = 14/206 (6%)
Query: 42 KYTFGHKCK--KLFLIEAEEGDEPK------------EHEKEKDVTQETPAISLHALARV 87
K+ GHKCK +LF++E +E + K + ++E + + P IS+HAL
Sbjct: 262 KWAPGHKCKSARLFIMECDESSDDKVPKSEVAEGRASKSKEETPIVEIEPGISIHALVGS 321
Query: 88 QSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTS 147
+P+TMR I ++ IL+D+GSTHNF+ + L S P LSV VANG+ + S
Sbjct: 322 PNPKTMRFLGHICGRAVVILVDTGSTHNFMDPSVIQRAHLPSNPTEGLSVKVANGQAVCS 381
Query: 148 PGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQ 207
G C V L +QG FY+L+L GCD VLG QWL TLG ILWDF +++M+F+
Sbjct: 382 EGSCAAVPLHMQGNLYTIDFYILTLGGCDIVLGVQWLQTLGPILWDFSRLQMEFSVWDKP 441
Query: 208 VTLRGATTSELKAIEGDTIQKTLRKN 233
L+G + + +EG+ K R+N
Sbjct: 442 QKLQGMAPTGISLVEGENFGKVSRQN 467
>gi|147774273|emb|CAN76793.1| hypothetical protein VITISV_026680 [Vitis vinifera]
Length = 1469
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 117/206 (56%), Gaps = 14/206 (6%)
Query: 42 KYTFGHKCK--KLFLIEAEEGDE---PK---------EHEKEKDVTQETPAISLHALARV 87
K+ GHKCK +LF++E +E + PK + ++E + + P IS+HAL
Sbjct: 297 KWAPGHKCKSARLFIMECDESSDDEVPKSEVAEGRASKSKEETPIVEIEPGISIHALVGS 356
Query: 88 QSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTS 147
+P+TMR I ++ IL+D+GSTHNF+ + L S P LSV VANG+ + S
Sbjct: 357 PNPKTMRFLGHICGRAVVILVDTGSTHNFMDPSVIQRAHLPSNPTEGLSVKVANGQAVRS 416
Query: 148 PGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQ 207
G C V L +QG FY+L+L GCD VLG QWL TLG ILWDF +++M+F+
Sbjct: 417 EGSCAAVPLHMQGNLYTIDFYILTLGGCDIVLGVQWLQTLGPILWDFSRLQMEFSVWDKP 476
Query: 208 VTLRGATTSELKAIEGDTIQKTLRKN 233
L+G + + + +EG+ K R+N
Sbjct: 477 RKLQGMSPTGISLVEGEKFGKVSRQN 502
>gi|218197921|gb|EEC80348.1| hypothetical protein OsI_22431 [Oryza sativa Indica Group]
Length = 402
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 130/244 (53%), Gaps = 33/244 (13%)
Query: 7 TRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQKYTFGH--KC--KKLFLIEAEEGDE 62
TRF RL A + AEC GL +K++ H +C K ++L+E +EG
Sbjct: 99 TRFRRLSA-------AEMAECREKGLCFNCP---EKFSKDHHRQCSMKGIYLLEMDEG-- 146
Query: 63 PKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFA 122
E + + +T ISLHAL +++ +TMRL I +++ L+DSGSTH F+ + A
Sbjct: 147 ----EDDDSINDDTVTISLHALTGIRTSKTMRLAVIIGGVTMSALVDSGSTHTFVATEAA 202
Query: 123 KITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQ 182
+ GL L+V+VANG+++TS G C G+ +++ Y++ LEG D VLG Q
Sbjct: 203 RRLGLSPTTKSGLNVMVANGDQVTSSGICSGIPIKIDSEDFIIDCYVIPLEGYDVVLGVQ 262
Query: 183 WLCTLGSILWDFDKMEMQFTKDGHQVTLR-------------GATTSELKAIEGDTIQKT 229
WL TLG ILWDFDK+ M F +D HQ +L AT++ ++ + +QK
Sbjct: 263 WLRTLGPILWDFDKLTMSFWRDDHQRSLPQDHIIVLEKPSTIAATSTPDHSMPSENVQKK 322
Query: 230 LRKN 233
+ N
Sbjct: 323 VHAN 326
>gi|108864287|gb|ABA92869.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 413
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 41 QKYTFGHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSIS 100
+K+ GHKC +LF IE ++ E + + + P +SL+ LA + TMRL I+
Sbjct: 175 EKFVRGHKCARLFYIEYDDN-----VEGDMEPAPDEPRVSLNVLAGLDGANTMRLPVEIA 229
Query: 101 KASLTILIDSGSTHNFLHHKFAKITGLKSEP-GCLLSVVVANGEKLTSPGRCKGVQLQLQ 159
+ L+DSGSTHNF+H + A+ L P L VVVANG++L SPGRC ++L+++
Sbjct: 230 GERVVALVDSGSTHNFIHTELARHLCLHLSPVRHDLYVVVANGDRLVSPGRCANLRLRIE 289
Query: 160 GTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
G + L + D +LG +WL TLG ILWDF M M + +VTL G
Sbjct: 290 GKLFTVDCFALDISTVDIILGTEWLSTLGPILWDFRNMRMSIWRSTREVTLHG 342
>gi|62734405|gb|AAX96514.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 575
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 99/177 (55%), Gaps = 14/177 (7%)
Query: 41 QKYTFGHKCKKLFLIEAE---EGD-EPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQ 96
+K+ GHKC +LF IE + EGD EP E P +SL+ LA + TMRL
Sbjct: 337 EKFVRGHKCARLFYIEYDDNVEGDMEPAPDE---------PRVSLNVLAGLDGANTMRLP 387
Query: 97 SSISKASLTILIDSGSTHNFLHHKFAKITGLKSEP-GCLLSVVVANGEKLTSPGRCKGVQ 155
I+ + L+DSGSTHNF+H + A+ L P L VVVANG++L SPGRC ++
Sbjct: 388 VEIAGERVVALVDSGSTHNFIHTELARHLCLHLSPVRHDLYVVVANGDRLVSPGRCANLR 447
Query: 156 LQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
L+++G + L + D +LG +WL TLG ILWDF M M + +VTL G
Sbjct: 448 LRIEGKLFTVDCFALDISTVDIILGTEWLSTLGPILWDFRNMRMSIWRSTREVTLHG 504
>gi|170660047|gb|ACB28472.1| polyprotein [Ananas comosus]
Length = 953
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 88/146 (60%)
Query: 85 ARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEK 144
A++ +TMRL ++ + ILIDSGSTHNFL A G +E ++V VA+G K
Sbjct: 4 AQLPDYRTMRLCGTVKNRRIHILIDSGSTHNFLDAAVAAKLGCCAENIPAVNVTVADGNK 63
Query: 145 LTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD 204
L S C+ + ++QG + +A LL L GCD VLG QWL LG ILWDF K+ M+F
Sbjct: 64 LISSSTCRAFKWKMQGLEFKANLLLLPLRGCDMVLGVQWLKQLGPILWDFSKLRMEFQFQ 123
Query: 205 GHQVTLRGATTSELKAIEGDTIQKTL 230
G ++ LRG++ LK IEG ++K +
Sbjct: 124 GQKIVLRGSSGPSLKIIEGKQLKKMV 149
>gi|12322948|gb|AAG51464.1|AC069160_10 gypsy/Ty3 element polyprotein, putative [Arabidopsis thaliana]
Length = 1447
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 105/185 (56%), Gaps = 2/185 (1%)
Query: 47 HKCKKLFLIEA-EEGDEPKEHEKEKDVTQET-PAISLHALARVQSPQTMRLQSSISKASL 104
HK +LF ++ EE ++ E + D Q+ P IS++A++ + +TM ++ ++ K L
Sbjct: 321 HKKTQLFRMDVDEEFEDAVEVLSDDDHEQKPMPQISVNAVSGISGYKTMGVKGTVDKRDL 380
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
ILIDSGSTHNF+ A G E L V VA+G KL G+ KG +LQ T +
Sbjct: 381 FILIDSGSTHNFIDSTVAAKLGCHVESAGLTKVAVADGRKLNVDGQIKGFTWKLQSTTFQ 440
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKAIEGD 224
+ L+ L+G D VLG QWL TLG I W+F K+EMQF +V L G T ++ I+
Sbjct: 441 SDILLIPLQGVDMVLGVQWLETLGRISWEFKKLEMQFFYKNQRVWLHGIITGSVRDIKAH 500
Query: 225 TIQKT 229
+QKT
Sbjct: 501 KLQKT 505
>gi|12322008|gb|AAG51046.1|AC069473_8 gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis
thaliana]
gi|10998138|dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1499
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 106/192 (55%), Gaps = 4/192 (2%)
Query: 41 QKYT----FGHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQ 96
+KYT HK +LF ++ +E E E D + P IS++A++ + +TMR++
Sbjct: 334 EKYTPEHYLVHKKTQLFRMDVDEEFEDAREELVNDDDEHMPQISVNAVSGIAGYKTMRVK 393
Query: 97 SSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQL 156
+ K + ILIDSGSTHNFL A G K + L V VA+G KL G+
Sbjct: 394 GTYDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRVEGKVTDFSW 453
Query: 157 QLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTS 216
+LQ T ++ L+ L+G D VLG QWL TLG I W+F K+EM+F + +V L G T+
Sbjct: 454 KLQTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLLHGLTSG 513
Query: 217 ELKAIEGDTIQK 228
++ ++ +QK
Sbjct: 514 SVREVKAQKLQK 525
>gi|242085414|ref|XP_002443132.1| hypothetical protein SORBIDRAFT_08g010830 [Sorghum bicolor]
gi|241943825|gb|EES16970.1| hypothetical protein SORBIDRAFT_08g010830 [Sorghum bicolor]
Length = 1462
Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 68/176 (38%), Positives = 96/176 (54%), Gaps = 4/176 (2%)
Query: 41 QKYTFGHK--CKKLFLIEAEEGDEPKEHEKEKDVTQET--PAISLHALARVQSPQTMRLQ 96
+ YT GH CK+LF ++ E D+ ++ + D T P SLHA+A V+ T+R++
Sbjct: 271 EPYTRGHNRFCKRLFFVDGVEVDDVEDAAEAGDQAAGTDAPCYSLHAVAGVRLSDTLRVR 330
Query: 97 SSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQL 156
+ SL L DSGS+HNF+ + A+ TGL LS VVANGE++ PG
Sbjct: 331 VMVGSVSLVALSDSGSSHNFISERAAQRTGLLVVSRPRLSAVVANGERIACPGVLPQAPF 390
Query: 157 QLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
+QG+ A +++ L G D VLGAQWL TLG + WDF M F + G + R
Sbjct: 391 VIQGSSFTADLFIMPLAGFDVVLGAQWLGTLGPVTWDFTARTMSFQQQGATILWRA 446
>gi|242093834|ref|XP_002437407.1| hypothetical protein SORBIDRAFT_10g026363 [Sorghum bicolor]
gi|241915630|gb|EER88774.1| hypothetical protein SORBIDRAFT_10g026363 [Sorghum bicolor]
Length = 1609
Score = 123 bits (308), Expect = 8e-26, Method: Composition-based stats.
Identities = 69/184 (37%), Positives = 102/184 (55%), Gaps = 9/184 (4%)
Query: 41 QKYTFGHKCKKLFLIEAEEG--DEPKEHEK-----EKDVTQET--PAISLHALARVQSPQ 91
+ Y GHKC +LF +E + +EP++ + +D +T P ISL A+ +++ +
Sbjct: 447 EPYVRGHKCARLFFLEVTDYIVEEPEDTDSGSTQPAEDAPYDTDKPLISLSAITGIRAHE 506
Query: 92 TMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRC 151
TM+L+ + LT L+DSGSTHNF+ A GL + V VANG+++ G
Sbjct: 507 TMQLRVHVGPHELTALLDSGSTHNFISSAAAHRAGLHFKDSEGAHVTVANGDRVLCRGLA 566
Query: 152 KGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLR 211
+GV LQ+ + Y + L+ CD VLG WL TLG ILWDFD + M+F+ G +V R
Sbjct: 567 RGVNLQIGMEVFKVDCYAIPLDSCDMVLGIAWLRTLGPILWDFDNLRMEFSLHGRRVQWR 626
Query: 212 GATT 215
G T
Sbjct: 627 GEGT 630
>gi|147822176|emb|CAN68077.1| hypothetical protein VITISV_042019 [Vitis vinifera]
Length = 480
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 113/227 (49%), Gaps = 9/227 (3%)
Query: 1 MVSEYQTRFERLLARAGHLTDKQEAECFISGLK--------DGLRTDVQKYTFGHKCKKL 52
MV YQ +FE L+ L + +CFISGLK +G D +KY HKCK+
Sbjct: 128 MVRAYQDQFEALMVTTTRLLKEFFVQCFISGLKERCTRDGKNGFVCD-EKYELVHKCKQN 186
Query: 53 FLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGS 112
FL++ E + E E D+ ++ +S++A+ + S QTMR+ +I K + I ID S
Sbjct: 187 FLLDGHESEWEAICEAENDIKEDDLMVSINAIFGLASHQTMRIHGNIKKKVVIIXIDLRS 246
Query: 113 THNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSL 172
T NFL K T + + V +G ++TS + +QG + + L+ L
Sbjct: 247 TXNFLDLVVXKRTRCLIQITNPMKAAVVDGTRITSDATYRQSTWNMQGKEFQVDLRLIPL 306
Query: 173 EGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELK 219
G D VLG QWL LG ILWDF + +F DG + LRG T K
Sbjct: 307 GGYDMVLGIQWLAELGPILWDFKNLRXKFIVDGRKFMLRGVTIGSTK 353
>gi|115481476|ref|NP_001064331.1| Os10g0317000 [Oryza sativa Japonica Group]
gi|15217201|gb|AAK92545.1|AC051624_3 Putative retroelement [Oryza sativa Japonica Group]
gi|31431040|gb|AAP52878.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
gi|113638940|dbj|BAF26245.1| Os10g0317000 [Oryza sativa Japonica Group]
Length = 1476
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 68/175 (38%), Positives = 98/175 (56%), Gaps = 7/175 (4%)
Query: 41 QKYTFGHK--CKKLFLIEA---EEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRL 95
+KY+ H CK+LF +E EEGD+ E + E + T E P SLHA+A + + + L
Sbjct: 283 EKYSRSHNKVCKRLFFVEGGAIEEGDDTVEDDTE-EATVEAPVFSLHAVAGIPLGKPILL 341
Query: 96 QSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQ 155
Q ++ ASL L+D+GSTHNF+ A TGL +P L+ VANGEK++ PG +
Sbjct: 342 QVTLGAASLVALVDTGSTHNFIGEDAALRTGLPVQPRPRLTATVANGEKVSCPGVLRRAP 401
Query: 156 LQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLG-SILWDFDKMEMQFTKDGHQVT 209
+ +QG + Y++ L G D VLG QW+ LG +I WD + F G V+
Sbjct: 402 ITIQGMAFDVDLYVMPLAGYDMVLGTQWMAHLGTTIAWDVTTGTVSFQHQGRTVS 456
Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQK 42
V +YQ RF+ LL RAG L + Q+ + F GL L VQ+
Sbjct: 160 VEDYQDRFQALLPRAGRLEEAQQVQLFTGGLLPPLSLQVQQ 200
>gi|147841216|emb|CAN64356.1| hypothetical protein VITISV_020633 [Vitis vinifera]
Length = 1852
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 107/195 (54%), Gaps = 4/195 (2%)
Query: 41 QKYTFGHKCK--KLFLIEAEEGDEPKEHEKE-KDVTQETPAISLHALARVQSPQTMRLQS 97
+++T GHKC+ +L LIE + + KE E D ++ +S+HAL SP+TMR+ +
Sbjct: 213 ERFTPGHKCQGPRLLLIEGHDEVQDKEEEAXISDNREDELEVSIHALXGWASPRTMRVAA 272
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
+I + +LIDSGSTHNFL K A+ L P +V VANGE+L GR + V +
Sbjct: 273 TIKSQPIMVLIDSGSTHNFLSDKVARTLRLPVVPTKSFTVHVANGERLLCQGRFEKVPID 332
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
LQG Y L L G D VLG QWL LGS++ ++ + M F + L+G
Sbjct: 333 LQGIPFSLTCYSLPLAGLDMVLGIQWLXMLGSVVCNWQYLTMDFNWENQARRLQG-IQGP 391
Query: 218 LKAIEGDTIQKTLRK 232
++A +TI K R+
Sbjct: 392 IQATSLETIAKEHRQ 406
>gi|147784790|emb|CAN75225.1| hypothetical protein VITISV_035856 [Vitis vinifera]
Length = 793
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 101/198 (51%), Gaps = 7/198 (3%)
Query: 42 KYTFGHKCKKLFLIEAEEGDEPKEHEKEKDVT-------QETPAISLHALARVQSPQTMR 94
K+T GHKC+ L L+ EE P + + + Q P IS HAL +P+TMR
Sbjct: 246 KFTVGHKCRGLQLLLLEENSSPNKEDDIDEEIEEPAINEQIEPEISFHALTGWSTPKTMR 305
Query: 95 LQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGV 154
+ + I + + +LIDSGSTHNF+ K A + L P +V V NG L GR + V
Sbjct: 306 ITAKIGQHEVVVLIDSGSTHNFISEKVADMLHLPVVPTKPFTVKVVNGTPLKCQGRFEHV 365
Query: 155 QLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGAT 214
+ LQG Y L L G D VLG QWL LG+++ ++ K+ M+F + L+G
Sbjct: 366 HVILQGIPFSLTLYSLPLTGLDLVLGVQWLEQLGTVVCNWKKLTMEFQWENQTHKLQGTN 425
Query: 215 TSELKAIEGDTIQKTLRK 232
T ++ + K LR+
Sbjct: 426 TQTIQVASLKAVSKELRQ 443
>gi|147842329|emb|CAN76208.1| hypothetical protein VITISV_041623 [Vitis vinifera]
Length = 522
Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 98/191 (51%), Gaps = 12/191 (6%)
Query: 41 QKYTFGHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSIS 100
+K+T GH+CK EGD E E D+ + P ISLHAL + +TMR+ + I
Sbjct: 280 EKFTSGHRCK--------EGDT---KEAETDLPSD-PEISLHALIGWTTTKTMRVTAKIG 327
Query: 101 KASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQG 160
+ +LIDSGSTHNF+ K + L P V VANG+ L GR + + LQG
Sbjct: 328 THDVVVLIDSGSTHNFISDKVVALLHLPVVPTAPFHVRVANGQPLKCQGRFDNIHILLQG 387
Query: 161 TQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKA 220
FY L L G D VLG QWL LGS++ D+ +M M+F L+G+ L+
Sbjct: 388 IPFSITFYSLPLNGLDLVLGVQWLEQLGSVVCDWKQMTMEFQWANKPRLLQGSRAQNLQQ 447
Query: 221 IEGDTIQKTLR 231
+ I K +R
Sbjct: 448 ASLEAIAKDMR 458
>gi|115457202|ref|NP_001052201.1| Os04g0191000 [Oryza sativa Japonica Group]
gi|38346036|emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa Japonica Group]
gi|113563772|dbj|BAF14115.1| Os04g0191000 [Oryza sativa Japonica Group]
Length = 1463
Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats.
Identities = 64/181 (35%), Positives = 100/181 (55%), Gaps = 5/181 (2%)
Query: 41 QKYTFGHK--CKKLFLIEAEEGDE--PKEHEKEKDVTQETPAISLHALARVQSPQTMRLQ 96
+K+T GH C++LF ++ E D+ + E P SLHA+A V T++LQ
Sbjct: 285 EKFTRGHNRFCRRLFFVDGVEIDDVAIEGDAAAAAGDTEAPVFSLHAVAGVPIADTIQLQ 344
Query: 97 SSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQL 156
++ ASL L+D GSTH+F+ + A+ GL + ++ +VANGE++ PG +
Sbjct: 345 VTVGDASLLALLDGGSTHSFIGEEAARRAGLPIQSSPRMTAIVANGERVACPGVIRDAAF 404
Query: 157 QLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG-ATT 215
+ G+ +++ L G D VLG +WL TLG I+WDF M F +DG + +G A+T
Sbjct: 405 TINGSTFHTDLFVMPLAGFDVVLGTRWLGTLGPIVWDFTSRSMAFQRDGQRFAWKGVAST 464
Query: 216 S 216
S
Sbjct: 465 S 465
>gi|116309032|emb|CAH66146.1| OSIGBa0114M03.4 [Oryza sativa Indica Group]
Length = 1448
Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats.
Identities = 68/185 (36%), Positives = 100/185 (54%), Gaps = 4/185 (2%)
Query: 41 QKYTFGHK--CKKLFLIEA-EEGDEPKEHEKEKDV-TQETPAISLHALARVQSPQTMRLQ 96
+KYT GH C++LFL+E EE ++ E D ++ P SL A+A V TM++
Sbjct: 283 EKYTRGHNRVCQRLFLLEGIEEDEDDGTPEDFGDAGAEDAPVFSLQAIAGVSFTDTMQVA 342
Query: 97 SSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQL 156
++ ASL L+DSGSTHNF+ A+ +GL + L+ +VANGE++T G +G L
Sbjct: 343 VTLGTASLVALLDSGSTHNFISEAAAQRSGLPLQQRPRLTAMVANGERVTCIGVIRGAPL 402
Query: 157 QLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTS 216
+ G A +++ L G D VLG +WL LG I+WD +M F G + G T
Sbjct: 403 TIGGNSFPADLFVMPLAGYDVVLGTRWLGALGPIVWDLATRKMTFQHRGRAICWSGVETP 462
Query: 217 ELKAI 221
A+
Sbjct: 463 SKPAL 467
Score = 41.6 bits (96), Expect = 0.29, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQ 41
V+EYQ RF+ LLARAG L + Q + F GL L DV+
Sbjct: 156 VAEYQDRFQALLARAGPLEEDQRVQLFTGGLLPPLSIDVR 195
>gi|356511037|ref|XP_003524238.1| PREDICTED: uncharacterized protein LOC100782971 [Glycine max]
Length = 1863
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 94/191 (49%), Gaps = 15/191 (7%)
Query: 41 QKYTFGHKCKK---LFLIEAEEG---DEPKEHEKEK---------DVTQETPAISLHALA 85
+K++ H+CK LF+ +++E D P + D T P ISLHA+A
Sbjct: 239 EKWSSSHRCKGRVLLFIADSDEASSMDNPSMEDPAPPTQATLPPFDPTPLLPHISLHAMA 298
Query: 86 RVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKL 145
V + T RL I+ +TIL+DSGSTHNF+ + AK GL E L V+V NG L
Sbjct: 299 GVPATDTFRLYGVINHTRVTILVDSGSTHNFVQPRIAKFLGLPMEDTTSLQVMVGNGSVL 358
Query: 146 TSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDG 205
C L LQ +L + G D VLG +WL TLG I+ D+ MQFT G
Sbjct: 359 ECKQSCPATTLLLQQHSFTVTLRVLPISGADVVLGVEWLRTLGPIITDYTSFTMQFTHLG 418
Query: 206 HQVTLRGATTS 216
+ LR T+
Sbjct: 419 QPIILRADVTT 429
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQKY---TFGHKCKKLFLIEAE 58
V+EY T FERL R L+ CF+SGL +R +VQ + + H L E +
Sbjct: 123 VTEYLTEFERLANRIVGLSPPMLLSCFVSGLNTEIRREVQAFQPVSLPHAMALARLQEDK 182
Query: 59 EGDEPKEHEKEKDVTQETPAISL---HALARVQSPQTMR 94
D ++H + +TP+ SL H R + P R
Sbjct: 183 LNDR-RKHSRTSLPPPQTPSPSLTTQHQPPRTKPPFVQR 220
>gi|14626274|gb|AAK71542.1|AC087852_2 putative reverse transcriptase [Oryza sativa Japonica Group]
gi|108711059|gb|ABF98854.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 258
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 67 EKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITG 126
E+ +D+ E+P SLHA+A V TM++Q ++ +LT L+DSGSTH+F+ + A TG
Sbjct: 11 EEPQDL--ESPVFSLHAIAGVPVADTMQVQVTVGATTLTALLDSGSTHSFIAEEAACRTG 68
Query: 127 LKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCT 186
L +P ++ VANGEK+ PG + L + G+ +++ L G D VLG QW+ +
Sbjct: 69 LPVQPRPRMTATVANGEKVACPGVIRQAVLSIDGSLFTVDLFVIPLAGYDMVLGTQWMAS 128
Query: 187 LGSILWDFDKMEMQFTKDGHQVTLRGATTSELKAI 221
LG I+WDF + M F G + G +S I
Sbjct: 129 LGPIVWDFTERTMSFQYHGRTICWAGVPSSPAPRI 163
>gi|359479937|ref|XP_002269588.2| PREDICTED: uncharacterized protein LOC100257206 [Vitis vinifera]
Length = 787
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 30/215 (13%)
Query: 41 QKYTFGHKCKK--LFLIEAEEGD---------------------EPKEHEKEKDVTQETP 77
+++T GH+C+K L L++ EG+ E +EHE + ++T
Sbjct: 264 ERFTAGHRCQKPQLLLLKGHEGNVDCGNGTDQQTWEDDHGGEAAEVQEHEPKLEIT---- 319
Query: 78 AISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSV 137
LHAL +P+TMR+ + + + +LIDSGSTHNF+ ++ A L P V
Sbjct: 320 ---LHALTGWTAPKTMRVTAKMGPHEVMVLIDSGSTHNFISNRLANKLRLPVIPTETFPV 376
Query: 138 VVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKM 197
VANGE+L GR V+++LQGT+ + L L G D VLG QWL LGS++ ++ ++
Sbjct: 377 WVANGERLKCQGRYDKVRVELQGTEFYLTLFSLPLSGLDLVLGVQWLEMLGSVVCNWKQL 436
Query: 198 EMQFTKDGHQVTLRGATTSELKAIEGDTIQKTLRK 232
M F + L+G +++ + I K R+
Sbjct: 437 TMDFIWENQDRRLQGVDVQTIQSASSEEILKEFRQ 471
>gi|147860462|emb|CAN82562.1| hypothetical protein VITISV_014148 [Vitis vinifera]
Length = 1384
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 98/198 (49%), Gaps = 7/198 (3%)
Query: 42 KYTFGHKCKKLFLIEAEEGDEPKEHEKEKDVT-------QETPAISLHALARVQSPQTMR 94
K+T GHKC+ L+ E P + + + Q P I HAL +P+TMR
Sbjct: 354 KFTVGHKCRGPQLLLLEGNSSPNKEDDIDEEIEEPAINEQTEPEIFFHALTGWSTPKTMR 413
Query: 95 LQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGV 154
+ + I + + +LIDSGSTHNF+ K + L P +V VANG L GR + V
Sbjct: 414 ITTKIGQHEVVVLIDSGSTHNFISEKVVDMLHLPXVPTDPFTVKVANGTPLKCQGRFEHV 473
Query: 155 QLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGAT 214
+ LQG Y L L G D VLG QWL LG+I+ ++ K+ M+F + L+G
Sbjct: 474 HVILQGIPFSLTLYSLPLTGLDLVLGVQWLEQLGTIVCNWKKLTMEFQWZNQTHKLQGTN 533
Query: 215 TSELKAIEGDTIQKTLRK 232
T ++ + K LR+
Sbjct: 534 TQTIQVASLKAVSKELRQ 551
>gi|147860532|emb|CAN81876.1| hypothetical protein VITISV_034528 [Vitis vinifera]
Length = 1241
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 99/198 (50%), Gaps = 7/198 (3%)
Query: 42 KYTFGHKCKKLFLIEAEEGDEPKEHEKEKDVT-------QETPAISLHALARVQSPQTMR 94
K+T GHKC+ L+ E P + + + Q P IS HAL +P+TMR
Sbjct: 278 KFTXGHKCRGPQLLLLEGNSIPNKEDDIDEEIEEPAINEQTKPEISFHALTGWSTPKTMR 337
Query: 95 LQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGV 154
+ + I + + +LIDSGSTHNF+ K A + L P +V VANG L GR + V
Sbjct: 338 ITAKIGQHKVVVLIDSGSTHNFISEKVADMLHLPVVPTKPFTVKVANGTPLKCQGRFEHV 397
Query: 155 QLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGAT 214
+ LQG Y L L G D VLG QWL L +++ ++ K+ M+F + L+G
Sbjct: 398 HVILQGIPFSLTLYSLPLTGLDLVLGVQWLEQLETVVCNWKKLTMEFQWENQTHKLQGTN 457
Query: 215 TSELKAIEGDTIQKTLRK 232
T ++ + K LR+
Sbjct: 458 TQTIQVASLKAVSKELRQ 475
>gi|147838975|emb|CAN68101.1| hypothetical protein VITISV_042364 [Vitis vinifera]
Length = 566
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 98/198 (49%), Gaps = 7/198 (3%)
Query: 42 KYTFGHKCKKLFLIEAEEGDEPKEHEKEKDVT-------QETPAISLHALARVQSPQTMR 94
K+T GHKC+ L+ E P + + Q P IS HAL +P+TMR
Sbjct: 264 KFTXGHKCRGPQLLLLEGNSXPNKENDIDEEIEEPAINEQTEPXISFHALTGWSTPKTMR 323
Query: 95 LQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGV 154
+ + I++ + +LIDSGSTHNF+ K A + L P +V VANG L R + V
Sbjct: 324 ITTKIAQHEVVVLIDSGSTHNFISEKVAYMLHLPVVPTKPFTVKVANGTPLKCQWRFEHV 383
Query: 155 QLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGAT 214
+ LQG Y L L D VLG QWL LG+++ ++ K+ M+F + L+G
Sbjct: 384 HVILQGIPFSLTLYSLPLTXLDLVLGVQWLEQLGTVVCNWKKLTMEFQWENQTHKLQGTN 443
Query: 215 TSELKAIEGDTIQKTLRK 232
T ++ I K LR+
Sbjct: 444 TQTIQVASLKAISKELRQ 461
>gi|147864527|emb|CAN80491.1| hypothetical protein VITISV_042679 [Vitis vinifera]
Length = 1412
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Query: 41 QKYTFGHKCKK--LFLIEAE---EGDEPKEHEKEKDVTQETPAI--SLHALARVQSPQTM 93
+K+T GHKCK+ L++++ + +G+ P+ + + + + +E I SL+AL + QTM
Sbjct: 326 EKFTPGHKCKRKQLYVMQIQVETDGEGPEGNLQMEGLXEEDEQIQLSLNALMSNEDSQTM 385
Query: 94 RLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKG 153
L + SL +LIDSGS+HNFL K AK + + V VANG++L C
Sbjct: 386 TLNGNYKGRSLFVLIDSGSSHNFLSSKVAKRVDCCWQKARGIRVTVANGQELHCTALCSD 445
Query: 154 VQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
+ ++QG + A Y+L LE D +LG QWL TLG I W+F+ ++M F +G L+G
Sbjct: 446 FRWRMQGQEFIAEVYVLPLETYDLILGTQWLATLGDISWNFNTLQMGFELNGKPYLLQG 504
>gi|32483242|emb|CAE02543.1| OSJNBb0069N01.1 [Oryza sativa Japonica Group]
gi|38344504|emb|CAE05183.2| OSJNBa0013A04.20 [Oryza sativa Japonica Group]
Length = 1395
Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats.
Identities = 66/174 (37%), Positives = 86/174 (49%), Gaps = 2/174 (1%)
Query: 41 QKYTFGHK--CKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSS 98
+ Y+ GH C++LF +E E D + + T ISLH V+ M +
Sbjct: 341 EPYSRGHNRVCRRLFFLEMGEDDADTDSTDDPAAAPATLRISLHVATGVRVSDAMHIMVH 400
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
+ L LIDSGST FL A G +P L+V VANG+K+ PG + Q+
Sbjct: 401 LGDTDLYALIDSGSTPTFLSQDAAARVGRDPQPRSGLNVTVANGDKVACPGVFPDMPFQI 460
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
G + Y+L+L G D VLG QWL TLG ILWDF + M F H VTL G
Sbjct: 461 AGEEFATDVYVLTLGGYDLVLGTQWLATLGPILWDFTALTMSFWHRDHCVTLHG 514
Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQ 41
V +Y F LLARAG+L++ Q+ + F GL++ + DVQ
Sbjct: 210 VDDYTDHFLDLLARAGYLSEDQQVQLFTIGLQEPMSLDVQ 249
>gi|18425247|gb|AAL69425.1|AC098565_7 Putative polyprotein [Oryza sativa]
gi|31430198|gb|AAP52144.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 848
Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 72 VTQETPAISLHALARVQSP--QTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKS 129
+T + P+ISLHALA V++P T+++Q+ I L L+DSGSTHNF+ A+ +
Sbjct: 327 LTLDEPSISLHALAGVRTPTFNTIKVQARIGATDLVALLDSGSTHNFISDVAARRARVPL 386
Query: 130 EPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGS 189
EP LSV VANG+++TSPG ++ + FY L L G D VLGAQWL +LG
Sbjct: 387 EPRHGLSVAVANGDRITSPGCFPSQRVTIGDHTFVIDFYALPLGGYDVVLGAQWLGSLGP 446
Query: 190 ILWDFDKMEMQFTKDGHQVTLRGATTSELKAIEGDTIQ 227
LWDF K + F ++ T EL + D+ Q
Sbjct: 447 TLWDFAKQSLAFGSPNNRAATIDGATGELMSELLDSFQ 484
>gi|147852240|emb|CAN80132.1| hypothetical protein VITISV_012031 [Vitis vinifera]
Length = 1371
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 102/179 (56%), Gaps = 7/179 (3%)
Query: 41 QKYTFGHKCKK--LFLIEAE---EGDEPKEHEKEKDVTQETPAI--SLHALARVQSPQTM 93
+K+T GHKCK+ L++++ + +G+ P+ + + + + +E I SL+AL + QTM
Sbjct: 326 EKFTPGHKCKRKQLYVMQIQVETDGEGPEGNLQMEGLGEEDEQIQLSLNALMSNEDSQTM 385
Query: 94 RLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKG 153
L + SL +LIDSGS+HNFL K AK + + V VANG +L C
Sbjct: 386 TLNGNYKGRSLFVLIDSGSSHNFLSSKVAKRVDCCWQKARGIRVTVANGHELHCTALCSD 445
Query: 154 VQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
+ ++QG + A Y+L LE D +LG QWL TLG I W+F+ ++M F +G L+G
Sbjct: 446 FRWRMQGQEFIAEVYVLPLETYDLILGTQWLATLGDISWNFNTLQMGFELNGKPYLLQG 504
>gi|147863509|emb|CAN79783.1| hypothetical protein VITISV_002632 [Vitis vinifera]
Length = 166
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
Query: 42 KYTFGHKCKKLFLIEA--EEGDEPKEHEKEKDVTQE--TPAISLHALARVQSPQTMRLQS 97
K+ GH CK+LF+I A + D+ ++ E +V QE P ISLHA+A +++P TMRL
Sbjct: 21 KFGLGHVCKRLFMIRATCNDSDDDEKMEIVSEVHQEDVKPEISLHAIAGLKAPNTMRLAG 80
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S+ + +LIDS STHNF+ + GL + + V+VA+GEKL SPGRC VQL+
Sbjct: 81 SLFFHPMEVLIDSWSTHNFISVLVVERVGLNLKQDRKMEVMVASGEKLVSPGRCSNVQLK 140
Query: 158 LQGTQIEAYFYLLSLE 173
LQ I F++L LE
Sbjct: 141 LQKVPIAVEFFILPLE 156
>gi|356573714|ref|XP_003555002.1| PREDICTED: uncharacterized protein LOC100810380 [Glycine max]
Length = 1273
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 97/183 (53%), Gaps = 12/183 (6%)
Query: 42 KYTFGHKCKKLFLIEAEEGDEPKEHEKEKDVTQ-----------ETPA-ISLHALARVQS 89
K+TF HKC ++ + D+ E E DV + P +SL+AL
Sbjct: 252 KFTFNHKCPNRLMLMLQLEDDKGEAEMSFDVVSRDNNSIAETVIDNPHHLSLNALKGGLG 311
Query: 90 PQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPG 149
T+R + I+ + +L+D+GS+ NFL + AK L EP L V+V NG +T G
Sbjct: 312 GGTIRFVAHINTLPVKVLVDNGSSDNFLQPRVAKFFKLPIEPSPLFKVMVDNGNYMTPIG 371
Query: 150 RCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVT 209
+ + +Q QG + + +LL + G D +LGA WL TLGS + D+D ++++F DG +T
Sbjct: 372 MIRELSIQAQGNRFQLPVFLLPISGADLILGAIWLKTLGSHIADYDSLQIKFLHDGKFIT 431
Query: 210 LRG 212
L+G
Sbjct: 432 LQG 434
>gi|15451607|gb|AAK98731.1|AC090485_10 Putative retroelement [Oryza sativa Japonica Group]
gi|108706172|gb|ABF93967.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1461
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 4/192 (2%)
Query: 41 QKYTFGHK--CKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSS 98
+KY+ GH CK+LF +++ E + E E +V E P SLHA+A V + L+
Sbjct: 292 EKYSRGHNKVCKRLFFVDSVE--DEDEEAPEDEVDAEAPVFSLHAVAGVAVGHPILLRVQ 349
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
+ +L L+D+GSTHNF+ A TGL +P ++ VANGEK+ PG + + +
Sbjct: 350 LGATTLVALVDTGSTHNFIGESAAARTGLSVQPRPRMTATVANGEKVACPGVLRHAPITI 409
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
+G Y++ L G D VLG QW+ LG + WD + F +G + +GA +
Sbjct: 410 EGMPFHVDLYVMPLAGYDIVLGTQWMAKLGRMSWDVTTRALTFDLEGRTICWQGAPNQDG 469
Query: 219 KAIEGDTIQKTL 230
A+ + +L
Sbjct: 470 PAVRAASADDSL 481
Score = 37.7 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQ 41
V +YQ RF+ LL RAG L ++Q + F GL L VQ
Sbjct: 162 VEDYQDRFQALLPRAGRLDEEQRVQLFTGGLLPPLSLQVQ 201
>gi|89887334|gb|ABD78322.1| polyprotein [Primula vulgaris]
Length = 1359
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 107/199 (53%), Gaps = 11/199 (5%)
Query: 41 QKYTFGHKC--KKLFLIEAEEGDEPKE-----HEKEKDVTQETPAISLHALARVQSPQTM 93
+K+ GH C K+FL++ E E + E ++++ E I+L A+ V + ++
Sbjct: 232 EKWFRGHVCVKPKIFLLQNVEEFENEINEESVEEIDENIVGENAEITLQAITGVTNSTSI 291
Query: 94 RLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKG 153
R + ++IL+DSGSTHNF+ K+ + L + ++ V +ANG+K+ S G C+
Sbjct: 292 RFVGKLKGQKVSILVDSGSTHNFIDPKWVPLLKLSNVQSDIMEVKIANGDKIKSSGTCEK 351
Query: 154 VQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGA 213
V+L +Q Q E F LL L G D VLG WL LG I DF + M FT +V L+G
Sbjct: 352 VKLLIQENQFEVDFLLLPLVGYDLVLGVHWLSQLGVINCDFKNLTMTFTHGNKKVCLKGL 411
Query: 214 TT----SELKAIEGDTIQK 228
+E++ +EG +++
Sbjct: 412 NNDTKIAEIQFLEGKMVKE 430
>gi|147783182|emb|CAN68669.1| hypothetical protein VITISV_039388 [Vitis vinifera]
Length = 1360
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 16/194 (8%)
Query: 41 QKYTFGHKCKK--LFLIEAE--------EGDEPKEHEKEKDVTQETPAISLHALARVQSP 90
+K+ GH+C++ LF+IE EG P++ E P I HA+A + P
Sbjct: 307 EKFVAGHRCERPQLFMIEDSPHMNTEDVEGAHPEQEHHEV-----IPEIYFHAIAGTEHP 361
Query: 91 QTMRLQSSISKASLTILIDSGSTHNFLHHKFAKIT-GLKSEPGCLLSVVVANGEKLTSPG 149
QT+ + + ++ +LID GSTHNF+ GL V+VAN EK+ G
Sbjct: 362 QTICVMGKLKNKNVMVLIDGGSTHNFIDQAIIVFKFGLPVIRDRKFEVMVANREKIECAG 421
Query: 150 RCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVT 209
+C+ + L +QG + A +Y+L + C VLG QWL TLG I D+ ++ M F +G T
Sbjct: 422 QCRSLTLTIQGYSVTADYYILPVAACQLVLGVQWLETLGPIEMDYKQLTMNFKMEGTSHT 481
Query: 210 LRGATTSELKAIEG 223
+G + ++A+
Sbjct: 482 FQGLGRTGIEALSN 495
>gi|18568267|gb|AAL75999.1|AF466646_7 putative polyprotein [Zea mays]
Length = 2749
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 65/184 (35%), Positives = 92/184 (50%), Gaps = 12/184 (6%)
Query: 41 QKYTFGHKCKKLFLIEAEE--GDEPKEHEKEKDVTQET----------PAISLHALARVQ 88
+ Y GH C +LF +E ++ DEP+E + + E P +SLHALA V+
Sbjct: 693 EPYVRGHVCPRLFYLENDDYIDDEPQEEGADLQIALEQEPPSRAAAIIPTVSLHALAGVR 752
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P M L SI+ L L+DSGST NF+ L S P + V VANG+ +
Sbjct: 753 TPNAMLLPVSINGHRLVALVDSGSTTNFMSVGLMSRLQLPSTPHPTIKVQVANGDNIPCQ 812
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
G + V L++ Q L+L D +LG ++L LG ILWD D++ M FTK G +
Sbjct: 813 GMARSVDLRVGTEQFSIDCIGLTLGTFDVILGFEFLRLLGPILWDCDRLSMSFTKGGRHI 872
Query: 209 TLRG 212
G
Sbjct: 873 IWSG 876
>gi|27764548|gb|AAO23078.1| polyprotein [Glycine max]
Length = 1552
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 105/184 (57%), Gaps = 7/184 (3%)
Query: 41 QKYTFGHKC--KKLFLIEAEEGDEPKEHEK-----EKDVTQETPAISLHALARVQSPQTM 93
+K++ HKC +++ L++ EE DE + E+ E ++ +T +SL+A+ T+
Sbjct: 332 EKFSPAHKCPNRQVMLLQLEETDEDQTDEQVMVTEEANMDDDTHHLSLNAMRGSNGVGTI 391
Query: 94 RLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKG 153
R + ++ IL+D GS+ NF+ + A++ L EP L V+V NG+ L++ G +
Sbjct: 392 RFTGQVGGIAVKILVDGGSSDNFIQPRVAQVLKLPVEPAPNLRVLVGNGQILSAEGIVQQ 451
Query: 154 VQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGA 213
+ L +QG +++ YLL + G D +LG+ WL TLG + D+ + ++F ++ +TL+G
Sbjct: 452 LPLHIQGQEVKVPVYLLQISGADVILGSTWLATLGPHVADYAALTLKFFQNDKFITLQGE 511
Query: 214 TTSE 217
SE
Sbjct: 512 GNSE 515
>gi|147772855|emb|CAN73669.1| hypothetical protein VITISV_003711 [Vitis vinifera]
Length = 1308
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 67 EKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITG 126
E E+D + P I+LHAL P+TM++++ I + LIDSGSTHNF+ + +
Sbjct: 200 EIEEDDNGKEPEITLHALTGWIVPRTMQIKAIIGAHDVVALIDSGSTHNFISDRVVETLR 259
Query: 127 LKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCT 186
L +P +V VANGE+L+ G+ + + + LQG + F+ + L G D VLG QWL T
Sbjct: 260 LLVKPTTPFTVRVANGERLSCKGKYEKLTVNLQGNEFHLDFFSVPLNGLDMVLGIQWLET 319
Query: 187 LGSILWDFDKMEMQFTKDGHQVTLRGATTSELKAIEGDTIQ 227
LGS++ D+ K M F + L+G E+ I+ T+Q
Sbjct: 320 LGSVVCDWKKRTMDFIWEQQPKKLQGI---EIPPIQDTTLQ 357
>gi|357130210|ref|XP_003566743.1| PREDICTED: uncharacterized protein LOC100838891 [Brachypodium
distachyon]
Length = 635
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 91/174 (52%), Gaps = 11/174 (6%)
Query: 41 QKYTFGHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSIS 100
+K+ GH+CK LF IE + E+E+D+ ISL A+ V++ TM+L +
Sbjct: 156 EKFVRGHRCKCLFYIEV------ADKEEEEDLQ-----ISLLAITGVRTSDTMQLVVWVG 204
Query: 101 KASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQG 160
+ L LIDSGSTHNF+ + A G L V +ANG+ +T G + + +
Sbjct: 205 ERELLALIDSGSTHNFISEELAAHVSAPFCTGRRLRVTIANGDHVTCSGLLRHTAIAIGQ 264
Query: 161 TQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGAT 214
Y + L G D VLG WL TLG ILWDF+++ M F + H+V+ GA
Sbjct: 265 ESFVVDLYAIPLGGFDVVLGTHWLKTLGPILWDFERLYMSFWRTDHRVSGAGAV 318
>gi|242085372|ref|XP_002443111.1| hypothetical protein SORBIDRAFT_08g008675 [Sorghum bicolor]
gi|241943804|gb|EES16949.1| hypothetical protein SORBIDRAFT_08g008675 [Sorghum bicolor]
Length = 1456
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 64/185 (34%), Positives = 97/185 (52%), Gaps = 6/185 (3%)
Query: 41 QKYTFGHK--CKKLFLIEAEEGDEPKEHEKEKDVTQET---PAISLHALARVQSPQTMRL 95
+K++ GH CK+LF +E E D+ + E + P SLHA+A V +TM++
Sbjct: 294 EKFSRGHNRFCKRLFFLEGVEIDDAQAEETDAAADAVAQEAPIFSLHAVAGVSVGRTMQV 353
Query: 96 QSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQ 155
+ + L L+D+GSTHNF+ A +GL + L+ +VANGEK+ PG K
Sbjct: 354 RVRVGSTPLIALLDTGSTHNFIAETAAARSGLPIQSQPRLTAMVANGEKVPCPGVIKHAP 413
Query: 156 LQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG-AT 214
+ + + +++ L G D VLG QW+ TLG ++WDF + F G V G A
Sbjct: 414 IAIHDSVFAVDLFVMPLAGHDLVLGTQWMATLGRLVWDFIDGSVSFQHQGSTVRWPGVAP 473
Query: 215 TSELK 219
TS L+
Sbjct: 474 TSTLE 478
>gi|242033109|ref|XP_002463949.1| hypothetical protein SORBIDRAFT_01g009436 [Sorghum bicolor]
gi|241917803|gb|EER90947.1| hypothetical protein SORBIDRAFT_01g009436 [Sorghum bicolor]
Length = 1450
Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 97/185 (52%), Gaps = 6/185 (3%)
Query: 41 QKYTFGHK--CKKLFLIEAEEGDEP---KEHEKEKDVTQETPAISLHALARVQSPQTMRL 95
+K++ GH CK+LF ++ E D+ + V QE P SLH +A V +TMR+
Sbjct: 353 EKFSRGHNRFCKRLFFLDGVEIDDAPADETEAAADAVAQEAPIFSLHVVAGVSVGRTMRV 412
Query: 96 QSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQ 155
+ + L L+D+GSTHNF+ A +GL + L+ +VANGEK+ PG K
Sbjct: 413 RVRVGSTPLIALLDTGSTHNFIAETAAARSGLPIQSQPRLTAMVANGEKVPCPGVIKNAP 472
Query: 156 LQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG-AT 214
L + + +++ L G D VLG QW+ TLG ++WDF + F G V G A
Sbjct: 473 LAIHDSVFAVDLFVMPLAGHDLVLGTQWMATLGRLVWDFVDGSVSFQHQGSTVCWPGVAP 532
Query: 215 TSELK 219
TS L+
Sbjct: 533 TSTLE 537
>gi|242070717|ref|XP_002450635.1| hypothetical protein SORBIDRAFT_05g008466 [Sorghum bicolor]
gi|241936478|gb|EES09623.1| hypothetical protein SORBIDRAFT_05g008466 [Sorghum bicolor]
Length = 1507
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 63/174 (36%), Positives = 90/174 (51%), Gaps = 2/174 (1%)
Query: 41 QKYTFGHK--CKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSS 98
+KYT GH C+++F +E E D + + E P SL A+A V TM+ + S
Sbjct: 363 EKYTRGHNRFCRRIFFLEGVEIDNAPDDVAAAEPDAEAPCFSLQAVAGVPVAGTMQPRVS 422
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
+ A L L+DSGSTHNF+ A+ +GL L+ +VANGE++T G + L +
Sbjct: 423 LGAAILVALLDSGSTHNFISAAAARRSGLPLRQRPRLTALVANGERVTCDGVIRDAPLLI 482
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
G A +++ L G D VLG +WL LG I+WD M F G V+ G
Sbjct: 483 DGVTFPADLFVMPLAGYDVVLGTRWLGALGPIVWDLSSRRMTFQHLGRPVSWTG 536
>gi|147773289|emb|CAN64782.1| hypothetical protein VITISV_003835 [Vitis vinifera]
Length = 1575
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 115/268 (42%), Gaps = 41/268 (15%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLK----DGLRTD------------------ 39
+ +YQ FERL R T + F+ GL+ DG+R
Sbjct: 507 LRDYQREFERLGNRVQGWTQRALVGTFMGGLRPNISDGIRMFKPQTLKESINLARMKDDQ 566
Query: 40 -VQKYTFGHKCKK----LFLIEAEEGDEPKEHEKEKDVTQETPA-----------ISLHA 83
++ FG L L + P VT+E PA I+LHA
Sbjct: 567 LARQRRFGRLAPPTRAPLTLPFTQLATPPA---PVAPVTEEQPAGQNHEGSPGLEITLHA 623
Query: 84 LARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE 143
L P+TMR+ + I + +L+DSGSTHNF+ + A + L P V VANGE
Sbjct: 624 LMGWTVPKTMRIVARIGAHDVVVLVDSGSTHNFISERMANLLRLPVVPTESFMVRVANGE 683
Query: 144 KLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203
L GR + VQ+ LQGT Y L L G D VLG QWL LGS+ D+ ++ M+F
Sbjct: 684 NLRCQGRFEEVQINLQGTIFSLTLYSLPLTGLDIVLGIQWLELLGSVGCDWRELTMEFMW 743
Query: 204 DGHQVTLRGATTSELKAIEGDTIQKTLR 231
+ L G ++A + K +R
Sbjct: 744 ENQTKKLVGIDGQHIQAASIKELTKEIR 771
>gi|9294238|dbj|BAB02140.1| unnamed protein product [Arabidopsis thaliana]
Length = 904
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 90/178 (50%)
Query: 51 KLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDS 110
+LF ++ ++ E E + + P I ++A++ + TMR++ L ILIDS
Sbjct: 192 QLFCMDVDDEFEDASEELLNEDEENMPQIFVNAVSGISDYTTMRVKGMYDNKILFILIDS 251
Query: 111 GSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLL 170
GST NF+ AK G K EP L V VA+G KL G+ +LQ T + ++
Sbjct: 252 GSTFNFIDSTMAKKLGCKVEPTGLTRVSVADGRKLRVDGKITDFTWKLQTTSFASDILMI 311
Query: 171 SLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKAIEGDTIQK 228
L+ D VLG QWL TLG I W+F K EM+F ++ L G + ++ + I K
Sbjct: 312 PLQVIDMVLGVQWLATLGRISWEFQKFEMRFKYKNQKILLHGLQSGSVREVRAQKIHK 369
>gi|356569674|ref|XP_003553022.1| PREDICTED: uncharacterized protein LOC100788433 [Glycine max]
Length = 1433
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 60/165 (36%), Positives = 84/165 (50%)
Query: 69 EKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLK 128
+ D+ TP ISL+AL+ + +P+T RL I+ +T+LIDSGSTHNFL + A L
Sbjct: 326 DPDLPFPTPHISLNALSGLPTPETFRLFGYINHTRITVLIDSGSTHNFLQPRLATFLHLP 385
Query: 129 SEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLG 188
+ P L V+V NG LT C + LQ F+LL + G D +LG QWL LG
Sbjct: 386 TVPTNPLRVLVGNGAVLTCTHLCPDTTISLQSHHFTLTFHLLPISGADVILGIQWLKLLG 445
Query: 189 SILWDFDKMEMQFTKDGHQVTLRGATTSELKAIEGDTIQKTLRKN 233
I D+ + M+F G V L I I++ ++ N
Sbjct: 446 PITTDYTSLIMKFHHLGQPVELHVDADHGPHPISATQIKRMIQTN 490
>gi|440577416|emb|CCI55439.1| PH01B031C15.22 [Phyllostachys edulis]
Length = 267
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 93/176 (52%), Gaps = 7/176 (3%)
Query: 41 QKYTFGHK--CKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSS 98
+K+ GH+ CK +F ++ E E +E E + T ISL AL ++ QTM+L
Sbjct: 15 EKFHPGHQKLCKHIFSLQVEPDSEDEEEEPKVAAT-----ISLLALTGIRKTQTMQLAVI 69
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I+ L L+DSGSTHNF+ + GL P LSV VANG+ +TS G C+ + +
Sbjct: 70 INGVHLLALVDSGSTHNFVAAELVARVGLSLTPRTGLSVAVANGDHVTSGGICRATLISI 129
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGAT 214
F + L+G D VLG QWL +LG I WDF M+F + G ++ GA
Sbjct: 130 DKEDFILDFLTIPLDGFDVVLGVQWLGSLGPITWDFHHRMMRFQRQGREIVWHGAN 185
>gi|387169525|gb|AFJ66186.1| hypothetical protein 11M19.5 [Arabidopsis halleri]
Length = 1557
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 84/167 (50%)
Query: 64 KEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAK 123
+E + + +E P IS +AL + MRL K L I +D GSTHNF+ K AK
Sbjct: 444 EEEDAVVNPNEEQPTISANALNGSTTFNCMRLMGQYGKHKLHIFVDPGSTHNFIDIKVAK 503
Query: 124 ITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQW 183
K E ++V A G K + R K ++QG L L+ D VLG QW
Sbjct: 504 EINCKLEGTRPMTVDAALGGKTVTLFRSKDFTWRMQGYSFTTEVRTLPLDHWDIVLGVQW 563
Query: 184 LCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKAIEGDTIQKTL 230
L TLG ILWDF + M+FT +G + LRG + K I+G+ + K L
Sbjct: 564 LATLGPILWDFTYLRMEFTLNGAKYILRGTAKAGCKVIKGNKLNKIL 610
>gi|147770944|emb|CAN69535.1| hypothetical protein VITISV_013569 [Vitis vinifera]
Length = 617
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 94/193 (48%), Gaps = 8/193 (4%)
Query: 42 KYTFGHKCK--KLFLIEAEEGDEPKEHEKE-KDVTQETPAISLHALARVQSPQTMRLQSS 98
K+T H+CK ++ L+E D+ + KE K P ISLHAL + +T
Sbjct: 171 KFTSAHRCKGPQILLLEGSIDDDSEGDIKEAKTDIPSDPEISLHALTGWTTAKT-----K 225
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I + + IDSGSTHNF+ K A + L P V VAN + L GR + + L
Sbjct: 226 IGTHDIVVFIDSGSTHNFISDKVAALLHLLVVPTAPFHVRVANDQPLKCQGRFHNIHILL 285
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG FY L L D VLG QWL LGS++ D+ +M M+F L+G+ T L
Sbjct: 286 QGIPFSITFYSLPLTSLDLVLGVQWLEQLGSVVCDWKRMTMEFQWANKPRLLQGSNTRIL 345
Query: 219 KAIEGDTIQKTLR 231
+ + I K +R
Sbjct: 346 QQASLEAISKDMR 358
>gi|242065034|ref|XP_002453806.1| hypothetical protein SORBIDRAFT_04g018075 [Sorghum bicolor]
gi|241933637|gb|EES06782.1| hypothetical protein SORBIDRAFT_04g018075 [Sorghum bicolor]
Length = 1414
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 11/151 (7%)
Query: 84 LARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE 143
+A V TM+++ S+ A+ L+DSGSTHNF+ + A+ TGL+ +P ++ +VANGE
Sbjct: 287 VAGVPLADTMQVRVSVGTATFVALLDSGSTHNFIAEEAARRTGLRVQPRARMTAMVANGE 346
Query: 144 KLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203
K+ PG + + + T +++ L G D VLG QW+ TLG I+WDF + FT
Sbjct: 347 KIPCPGVIRHAPVTIDNTTFAIDLFVMPLAGYDIVLGTQWMATLGPIVWDFAARSLSFTY 406
Query: 204 DGHQV-----------TLRGATTSELKAIEG 223
G +LR AT S ++G
Sbjct: 407 QGRAFCWAGVPSTGAPSLRAATASSASLLDG 437
>gi|356514101|ref|XP_003525745.1| PREDICTED: uncharacterized protein LOC100809540 [Glycine max]
Length = 1232
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 106/252 (42%), Gaps = 43/252 (17%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQKYTFGHKCKKLFLIEAEEG- 60
V+EY + FERL R L CFISGL L +VQ + + L + +E
Sbjct: 94 VNEYLSEFERLANRVVGLAPPLSLSCFISGLNPELHREVQALQPMCLPQAMALAKLQEDK 153
Query: 61 --DEPKEHEKEKDVTQ-----------------ETPAIS--------------------- 80
D + H V+ P I
Sbjct: 154 LLDRRRNHRHNFPVSPTPHHPNNPPPSSSTSATNKPPIRRLTPEEMALKRDKGLCYHCDE 213
Query: 81 --LHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVV 138
L+AL+ + +P+T R+ ++ + LTIL+D GSTHNF+ + AK GL S P L V+
Sbjct: 214 KCLNALSGMPAPETFRVYGTVRRHQLTILVDGGSTHNFVQLRVAKFLGLPSTPMTPLPVM 273
Query: 139 VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKME 198
V +G + R V + +QG Q + L L G D VLG QWL LG + D+ +
Sbjct: 274 VGDGGVIHCDCRYPQVSITIQGHQFTTDLFGLPLSGADLVLGVQWLRALGPVTTDYTALS 333
Query: 199 MQFTKDGHQVTL 210
M FT G + L
Sbjct: 334 MSFTHLGLPIKL 345
>gi|242095940|ref|XP_002438460.1| hypothetical protein SORBIDRAFT_10g020018 [Sorghum bicolor]
gi|241916683|gb|EER89827.1| hypothetical protein SORBIDRAFT_10g020018 [Sorghum bicolor]
Length = 1437
Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 58/170 (34%), Positives = 87/170 (51%), Gaps = 4/170 (2%)
Query: 41 QKYTFGHK--CKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSS 98
+ Y+ GH C+++F I+ E + + D P SL A+ + TM+++ +
Sbjct: 285 EPYSRGHNRVCRRIFFIDGVELAD--DEAVPDDAEPAAPVFSLRAVTGMPICDTMQVRVA 342
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
+ +LT L+D+GSTHNF+ A TGL L+ VANGE++ PG + + +
Sbjct: 343 VGDVTLTALLDTGSTHNFIAETAATRTGLPVLADPRLTATVANGERIACPGVLRQAPIII 402
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
G Y+L L G D VLG QWL TLG I WDF + FT+ +V
Sbjct: 403 DGEGFCVDLYVLPLAGYDLVLGTQWLVTLGRIEWDFTARTLSFTRQDRRV 452
>gi|356574444|ref|XP_003555357.1| PREDICTED: uncharacterized protein LOC100813803 [Glycine max]
Length = 2140
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 93/212 (43%), Gaps = 22/212 (10%)
Query: 41 QKYTFGHKCKKLFLIEAEEGDEP---------------KEHE-------KEKDVTQETPA 78
+K+ H+CK L DE EH+ + D+T P
Sbjct: 147 EKWNSSHRCKGRVLFFIANSDETSSPESSPSDPSSPLKSEHDHTLLEATQAFDLTPLQPH 206
Query: 79 ISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVV 138
ISLHA+A V + T RL I+K +TIL+DSGSTHNF+ + AK L L V+
Sbjct: 207 ISLHAMAGVPATDTFRLYGLINKTRVTILVDSGSTHNFVQPRVAKFLNLPLHDTQPLRVM 266
Query: 139 VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKME 198
V NG L + +Q + LL L G D VLG +WL TLG ++ D+
Sbjct: 267 VGNGSVLDCQQMIPDTTILIQEHRFVVTLRLLPLSGADVVLGVEWLRTLGPVITDYTDFT 326
Query: 199 MQFTKDGHQVTLRGATTSELKAIEGDTIQKTL 230
M+FT G + LR + +++ +
Sbjct: 327 MKFTLFGRPIHLRADVQVNTSPVSAHQVRRLI 358
>gi|242077302|ref|XP_002448587.1| hypothetical protein SORBIDRAFT_06g029685 [Sorghum bicolor]
gi|241939770|gb|EES12915.1| hypothetical protein SORBIDRAFT_06g029685 [Sorghum bicolor]
Length = 797
Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 62/185 (33%), Positives = 95/185 (51%), Gaps = 6/185 (3%)
Query: 41 QKYTFGHK--CKKLFLIEAEEGDEPKEHEKEKDVTQET---PAISLHALARVQSPQTMRL 95
+K++ GH CK+LF +E E D+ + E + P SLHA+ V +TM++
Sbjct: 353 EKFSRGHNRFCKRLFFLEGMEIDDAQAEETDAAADAVAQEAPIFSLHAVVGVSVGRTMQV 412
Query: 96 QSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQ 155
+ + L L+D+GSTHNF+ A +GL + L+ +VANGEK+ G K
Sbjct: 413 RVRVGSTPLIALLDTGSTHNFIAETAAARSGLPIQSQPRLTAMVANGEKVPCLGVIKHAP 472
Query: 156 LQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG-AT 214
+ + + +++ L G D VLG QW+ TLG ++WDF + F G V G A
Sbjct: 473 IAIHDSVFAVDLFVMPLAGHDLVLGTQWMATLGRLVWDFVDGSVTFQHQGSTVRWPGVAP 532
Query: 215 TSELK 219
TS L+
Sbjct: 533 TSTLE 537
>gi|12322951|gb|AAG51467.1|AC069160_13 hypothetical protein, 5' partial [Arabidopsis thaliana]
Length = 368
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 3/147 (2%)
Query: 79 ISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVV 138
IS++A++ V +TMR++ K L+ILID STH+F+ K A+ +P + V
Sbjct: 195 ISVNAISGVSDYRTMRVKGLYEKQVLSILIDPDSTHSFMDSKVAEKLKCVLKPASMAQVS 254
Query: 139 VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKME 198
VA+G L + Q +L+GTQ++A +++L GCD VLGAQWL TLG I DF K
Sbjct: 255 VADGRLLGLNAKIDKFQWELRGTQLQADLMVITLRGCDMVLGAQWLETLGPITCDFKKSV 314
Query: 199 MQFTKDGHQVTLRG---ATTSELKAIE 222
MQF +V L+G + ++KAI+
Sbjct: 315 MQFHIGQKKVPLQGIRQGSVRDVKAIK 341
>gi|12324281|gb|AAG52110.1|AC023064_3 hypothetical protein; 60873-62443 [Arabidopsis thaliana]
Length = 508
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 3/147 (2%)
Query: 79 ISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVV 138
IS++A++ V +TMR++ K L+ILID STH+F+ K A+ +P + V
Sbjct: 335 ISVNAISGVSDYRTMRVKGLYEKQVLSILIDPDSTHSFMDSKVAEKLKCVLKPASMAQVS 394
Query: 139 VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKME 198
VA+G L + Q +L+GTQ++A +++L GCD VLGAQWL TLG I DF K
Sbjct: 395 VADGRLLGLNAKIDKFQWELRGTQLQADLMVITLRGCDMVLGAQWLETLGPITCDFKKSV 454
Query: 199 MQFTKDGHQVTLRG---ATTSELKAIE 222
MQF +V L+G + ++KAI+
Sbjct: 455 MQFHIGQKKVPLQGIRQGSVRDVKAIK 481
>gi|115487072|ref|NP_001066023.1| Os12g0121200 [Oryza sativa Japonica Group]
gi|113648530|dbj|BAF29042.1| Os12g0121200, partial [Oryza sativa Japonica Group]
Length = 461
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 71/120 (59%), Gaps = 4/120 (3%)
Query: 92 TMRLQSSISKASLTILIDSGSTHNFLHHKFAKITG--LKSEPGCLLSVVVANGEKLTSPG 149
T+++ + + L L+DSGSTHNF++ A G L+ PG LSV VANG+++ SPG
Sbjct: 1 TIKVWARLGSQELVALLDSGSTHNFINDAIAHQAGVPLQRRPG--LSVAVANGDRVPSPG 58
Query: 150 RCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVT 209
RC ++ + + + FY L L G D VLGAQWL TLG LWDF + + F +VT
Sbjct: 59 RCPPQRVSIGSHEFDIDFYALPLGGYDIVLGAQWLGTLGPTLWDFSRQSLAFGPAHDRVT 118
>gi|3810596|gb|AAC69378.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 945
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Query: 54 LIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGST 113
+++ E DE E E + + P I+L+AL V + T+R++++I + L LI+SGST
Sbjct: 281 VMKGENDDEAVEEESTE--AEGKPEITLYALEGVDTTSTIRVRATIHRNRLIALINSGST 338
Query: 114 HNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLE 173
HNF+ K + LK+ +V V NG L R + + + + G Y L L
Sbjct: 339 HNFIGEKAVRGMNLKATTTKPFTVRVVNGMPLVCRSRYEAIPVVMGGVVFPVTLYALPLM 398
Query: 174 GCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKAIEGDTIQKTLR 231
G D +G QWL TLG L ++ + +QF G +V L G + L+ +E TI K R
Sbjct: 399 GLDLAMGVQWLSTLGPTLCNWKEQTLQFHWAGDEVRLMGIKPTGLRGVEHKTITKKAR 456
>gi|356529593|ref|XP_003533374.1| PREDICTED: uncharacterized protein LOC100812827 [Glycine max]
Length = 572
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 74/132 (56%)
Query: 81 LHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVA 140
+ L + TMR++ I L +LIDSG++HNF+ K GL P S+ +
Sbjct: 389 MGVLGSMGESHTMRVEGKIHNVDLLVLIDSGASHNFISPKVTTALGLVITPTVAKSIKLG 448
Query: 141 NGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQ 200
+G +L + G CKGV +Q+ G ++ +L L G D VLG WL TLG+++ D+ M MQ
Sbjct: 449 DGHRLITNGVCKGVNMQMGGIEVIVDALVLELGGMDMVLGVAWLRTLGNVIMDWKAMTMQ 508
Query: 201 FTKDGHQVTLRG 212
F+ + VTL+G
Sbjct: 509 FSYEHELVTLQG 520
>gi|77551695|gb|ABA94492.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 306
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 77 PAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEP---GC 133
P +SL AL+ V TMRL I + LIDSGSTHNF+H + A L+ EP G
Sbjct: 168 PRVSLSALSVVGGDNTMRLPVMIDGLRVVSLIDSGSTHNFIHTELAHHLRLRLEPVRDG- 226
Query: 134 LLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQW--LCTLGSIL 191
L VVVANG+++ SPGRC + L + G + L L D +LG +W L TLG +L
Sbjct: 227 -LRVVVANGDRIVSPGRCHNLPLLIDGEIFRVDCFALDLCAVDIILGTEWLQLQTLGPVL 285
Query: 192 WDFDKME 198
WDF +E
Sbjct: 286 WDFKNIE 292
>gi|449472371|ref|XP_004153573.1| PREDICTED: uncharacterized protein LOC101213561, partial [Cucumis
sativus]
Length = 764
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 102/189 (53%), Gaps = 17/189 (8%)
Query: 41 QKYTFGHKCK-------KLFLIEAEEGDEPKE----HEKEKDVTQETPA------ISLHA 83
+KY GH+CK ++++++ +E E E E E + + P +S+++
Sbjct: 348 EKYFHGHRCKGREQRELRMYVVKEDEEYEIVEEAEWDETELNCVEINPEDQAIVELSINS 407
Query: 84 LARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE 143
+ + +P TM+++ I + ILID G+THNF+ K + L ++ V++ +G
Sbjct: 408 VVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGA 467
Query: 144 KLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203
+ G C+G++L+L+G ++EA F L L G D VLG QWL +LG D+ + M F
Sbjct: 468 AVKGKGICEGIELELEGWKVEANFLPLELGGVDGVLGMQWLYSLGVTEVDWKNLTMTFLH 527
Query: 204 DGHQVTLRG 212
+G +V ++G
Sbjct: 528 NGKKVKIKG 536
>gi|449457325|ref|XP_004146399.1| PREDICTED: uncharacterized protein LOC101219499 [Cucumis sativus]
Length = 718
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 102/189 (53%), Gaps = 17/189 (8%)
Query: 41 QKYTFGHKCK-------KLFLIEAEEGDEPKE----HEKEKDVTQETPA------ISLHA 83
+KY GH+C+ ++++++ +E E E E E + + P +S+++
Sbjct: 321 EKYFHGHRCRGREQRELRMYVVKEDEEYEIVEEAEWDETESNCVEINPEDQAIVELSINS 380
Query: 84 LARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE 143
+ + +P TM+++ I + ILID G+THNF+ K + L ++ V++ +G
Sbjct: 381 VVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGA 440
Query: 144 KLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203
+ G C+G++L+L+G ++EA F L L G D VLG QWL +LG D+ + M F
Sbjct: 441 AVKGKGICEGIELELEGWKVEANFLPLELGGVDGVLGMQWLYSLGVTEVDWKNLTMTFLH 500
Query: 204 DGHQVTLRG 212
+G +V ++G
Sbjct: 501 NGKKVKIKG 509
>gi|449473450|ref|XP_004153884.1| PREDICTED: enzymatic polyprotein-like, partial [Cucumis sativus]
Length = 564
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 16/209 (7%)
Query: 41 QKYTFGHKCKK-------LFLIEAEEG--DEPKEHEKEKDVTQ-------ETPAISLHAL 84
++Y+ GH+CK LF++ EE DE + E ++V + E I L A+
Sbjct: 166 ERYSPGHRCKMKDKRELMLFIMNEEESLEDEDRTEETNEEVLELNQLTLEEGTEIELKAI 225
Query: 85 ARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEK 144
+ S TM+++ I + ILIDSG+THNF+H+K + GL+ E V + +G +
Sbjct: 226 HGLTSKGTMKIKGEIKGKEVLILIDSGATHNFIHNKIVEEVGLELENHTPFGVTIGDGTR 285
Query: 145 LTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD 204
G C ++L+L+ I A F + L D +LG QWL T G++ + + M F
Sbjct: 286 CQGRGVCNRLELKLKEITIVADFLAIELGSVDVILGMQWLNTTGTMKIHWPSLTMTFRMG 345
Query: 205 GHQVTLRGATTSELKAIEGDTIQKTLRKN 233
Q L+G + TI+KT ++
Sbjct: 346 KKQFILKGDPSLIRAECSLKTIEKTWEED 374
>gi|449470598|ref|XP_004153003.1| PREDICTED: enzymatic polyprotein-like, partial [Cucumis sativus]
Length = 1049
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 16/209 (7%)
Query: 41 QKYTFGHKCKK-------LFLIEAEEG--DEPKEHEKEKDVTQ-------ETPAISLHAL 84
++Y+ GH+CK LF++ EE DE + E ++V + E I L A+
Sbjct: 301 ERYSPGHRCKMKDKRELMLFIMNEEESLEDEDRTEETNEEVLELNQLTLEEGTEIELKAI 360
Query: 85 ARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEK 144
+ S TM+++ I + ILIDSG+THNF+H+K + GL+ E V + +G +
Sbjct: 361 HGLTSKGTMKIKGEIKGKEVLILIDSGATHNFIHNKIVEEVGLELENHTPFGVTIGDGTR 420
Query: 145 LTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD 204
G C ++L+L+ I A F + L D +LG QWL T G++ + + M F
Sbjct: 421 CQGRGVCNRLELKLKEITIVADFLAIELGSVDVILGMQWLNTTGTMKIHWPSLTMTFRMG 480
Query: 205 GHQVTLRGATTSELKAIEGDTIQKTLRKN 233
Q L+G + TI+KT ++
Sbjct: 481 KKQFILKGDPSLIRAECSLKTIEKTWEED 509
>gi|147775005|emb|CAN70471.1| hypothetical protein VITISV_013478 [Vitis vinifera]
Length = 1122
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 74/140 (52%)
Query: 93 MRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCK 152
MR+ + I + + +LIDSGSTHNF+ K A + L P +V VANG L GR +
Sbjct: 1 MRITAKIGQHEVVVLIDSGSTHNFISEKVADMLHLSVVPTKPFTVKVANGTPLKCQGRFE 60
Query: 153 GVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
V + LQG Y L L G D VLG QWL LG+++ ++ K+ M+F + L+G
Sbjct: 61 HVHVILQGIPFSLTLYSLPLTGLDLVLGVQWLEQLGTVVCNWKKLTMEFQWENQTHKLQG 120
Query: 213 ATTSELKAIEGDTIQKTLRK 232
T ++ + K LR+
Sbjct: 121 TNTQTIQVASLKAVSKELRQ 140
>gi|440577319|emb|CCI55326.1| PH01B001I13.22 [Phyllostachys edulis]
Length = 1426
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 68/134 (50%)
Query: 79 ISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVV 138
ISL AL ++ QTM+ I+ L L+DSGSTHNF+ + GLK P LSV
Sbjct: 1259 ISLLALTGIRKAQTMQPPVLINGIQLMALVDSGSTHNFIAAELIDKVGLKLAPRTGLSVA 1318
Query: 139 VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKME 198
VANG K+T G C + + + L G D VLG QWL +LG I WDF +
Sbjct: 1319 VANGNKITCGGVCYTTPISIDHEHFVLDLLTIPLGGFDIVLGVQWLRSLGPITWDFSNLT 1378
Query: 199 MQFTKDGHQVTLRG 212
M+ + VT G
Sbjct: 1379 MRLHRQDRTVTWHG 1392
>gi|449465222|ref|XP_004150327.1| PREDICTED: uncharacterized protein LOC101216833 [Cucumis sativus]
Length = 2712
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 102/189 (53%), Gaps = 17/189 (8%)
Query: 41 QKYTFGHKCK-------KLFLIEAEEGDEPKE----HEKEKDVTQETPA------ISLHA 83
+KY GH+CK ++++++ +E E E E E + + P +S+++
Sbjct: 1261 EKYFHGHRCKGREQRELRMYVVKEDEEYEIVEEAEWDETELNCVEINPEDQAIVELSINS 1320
Query: 84 LARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE 143
+ + +P+TM+++ I + ILID G+THNF+ K + L ++ V++ +G
Sbjct: 1321 VVGLTNPKTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGA 1380
Query: 144 KLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203
+ G C+G++L+L+G ++EA F L L G D VL QWL +LG D+ + M F
Sbjct: 1381 AVKGKGICEGIELELEGWKVEANFLPLELGGVDGVLEMQWLYSLGVTEVDWKNLTMTFLH 1440
Query: 204 DGHQVTLRG 212
+G +V ++G
Sbjct: 1441 NGKKVKIKG 1449
>gi|449496938|ref|XP_004160268.1| PREDICTED: uncharacterized protein LOC101232747 [Cucumis sativus]
Length = 701
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 16/191 (8%)
Query: 41 QKYTFGHKCKK------LFLIEAEEGDEPKEHEKEKDVTQ----------ETPAISLHAL 84
+KY+ GH+CK + LI EE D +E E + ++ E I L +
Sbjct: 234 EKYSPGHRCKGREKRELMLLILNEEEDHERESNTEDEASEIIELNQLELNEDTPIELRLI 293
Query: 85 ARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEK 144
V S TM+L+ ++ + ILIDSG+T+NF+ L +PG V + NG +
Sbjct: 294 TGVTSKGTMKLKGHVNGKEVVILIDSGATNNFISQVLVDELQLSIDPGTRFGVNIGNGTR 353
Query: 145 LTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD 204
G CK V+++L+ I A F + L D VLG QWL + G++ + + M F
Sbjct: 354 CEGRGICKRVKVKLKELTIVADFLAVELGKVDLVLGMQWLDSTGTMKVHWPSLTMTFWTK 413
Query: 205 GHQVTLRGATT 215
G ++ L+G ++
Sbjct: 414 GRRIILKGDSS 424
>gi|108862596|gb|ABA97714.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1287
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 19/187 (10%)
Query: 41 QKYTFGHK--CKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSS 98
++YT GH C+++F I+ E + + + D E P + +
Sbjct: 266 ERYTRGHNRVCRRVFFIDGVELADADDAQAAADQDAEAP-----------------VAVA 308
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
+ ASL +DSGSTHNF+ A+ +G+ L+ +VANGE++T G K L +
Sbjct: 309 LGPASLVAFLDSGSTHNFISEAAARRSGMPLHTRPRLTAMVANGERVTCAGVLKAAPLTI 368
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
G A +++ L G D VLG WL TLG I+WD M F + G V G T
Sbjct: 369 DGALFPADLFVMPLVGFDVVLGTCWLGTLGPIVWDLASHRMSFQRQGRTVCWSGVPTPGA 428
Query: 219 KAIEGDT 225
A+ T
Sbjct: 429 PALAATT 435
>gi|147802690|emb|CAN72998.1| hypothetical protein VITISV_043958 [Vitis vinifera]
Length = 1078
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 11/199 (5%)
Query: 41 QKYTFGHKCKKL------FLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMR 94
+K+ HKCK + EE DE H + ISLHAL R + +TM
Sbjct: 211 EKFAPRHKCKGXQLLLLEGXYDEEENDEAGAHTHLXGEXE----ISLHALTRWSTARTMX 266
Query: 95 LQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGV 154
+ + + L +LIDSGSTHNF++ + ++ L P +V VANG+ L GR + V
Sbjct: 267 VSAKVGPHELIVLIDSGSTHNFINERIVELLQLPMVPTEPFNVKVANGDPLKCQGRFENV 326
Query: 155 QLQLQGTQIE-AYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGA 213
+ LQG + Y L L G D VLG L LG+++ D M M+F+ + L G
Sbjct: 327 SVLLQGIPFTLSTLYSLPLIGLDMVLGVHXLEQLGTVVCDXKIMTMEFSWKDXRHQLEGI 386
Query: 214 TTSELKAIEGDTIQKTLRK 232
++ + TI K +++
Sbjct: 387 DNQPIQPTKFKTISKEIKQ 405
>gi|242085390|ref|XP_002443120.1| hypothetical protein SORBIDRAFT_08g009530 [Sorghum bicolor]
gi|241943813|gb|EES16958.1| hypothetical protein SORBIDRAFT_08g009530 [Sorghum bicolor]
Length = 1574
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 61/191 (31%), Positives = 89/191 (46%), Gaps = 15/191 (7%)
Query: 41 QKYTFGHKCKKLFLIEAEE----------GDEPKEHEKEKDVTQETP-----AISLHALA 85
+ Y GH C++LF ++ ++ +E+ E P +SLHA+A
Sbjct: 480 EPYVPGHVCQRLFYLDVDDYVVEDAVPVGDAAAAAALREEPAAPELPNANAFVVSLHAVA 539
Query: 86 RVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKL 145
+++ TM L + L L+D+GSTHNFL + GL G L V VANG++L
Sbjct: 540 GIRTENTMLLPVLVKGERLLALLDTGSTHNFLRGTTMRRLGLSPAGGEQLRVTVANGDRL 599
Query: 146 TSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDG 205
G V + + G L L D +LG +L TLG ILWDF M M F++ G
Sbjct: 600 PCEGIAHDVPISIAGEVFSITCVGLDLGSFDLILGVDYLRTLGPILWDFGAMTMAFSRQG 659
Query: 206 HQVTLRGATTS 216
++ RG S
Sbjct: 660 RRILWRGVGGS 670
>gi|242085388|ref|XP_002443119.1| hypothetical protein SORBIDRAFT_08g009520 [Sorghum bicolor]
gi|241943812|gb|EES16957.1| hypothetical protein SORBIDRAFT_08g009520 [Sorghum bicolor]
Length = 1595
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 61/191 (31%), Positives = 89/191 (46%), Gaps = 15/191 (7%)
Query: 41 QKYTFGHKCKKLFLIEAEE----------GDEPKEHEKEKDVTQETP-----AISLHALA 85
+ Y GH C++LF ++ ++ +E+ E P +SLHA+A
Sbjct: 480 EPYVPGHVCQRLFYLDVDDYVVEDAVPVGDAAAAAALREEPAAPELPNANAFVVSLHAVA 539
Query: 86 RVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKL 145
+++ TM L + L L+D+GSTHNFL + GL G L V VANG++L
Sbjct: 540 GIRTENTMLLPVLVKGERLLALLDTGSTHNFLRGTTMRRLGLSPAGGEQLRVTVANGDRL 599
Query: 146 TSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDG 205
G V + + G L L D +LG +L TLG ILWDF M M F++ G
Sbjct: 600 PCEGIAHDVPISIAGEVFSITCVGLDLGSFDLILGVDYLRTLGPILWDFGAMTMAFSRQG 659
Query: 206 HQVTLRGATTS 216
++ RG S
Sbjct: 660 RRILWRGVGGS 670
>gi|449449136|ref|XP_004142321.1| PREDICTED: uncharacterized protein LOC101219643 [Cucumis sativus]
Length = 648
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 18/189 (9%)
Query: 41 QKYTFGHKCKK------LFLIEAEEGDEPKEHEKEKDVTQ-----------ETPAISLHA 83
+KY GH+CK + LI EE D +E + E + ++ + P I L
Sbjct: 317 EKYAPGHRCKGREKRELMLLILNEEEDHKREEDTEDEASEVIELNHLELNMDNP-IELRL 375
Query: 84 LARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE 143
+ V S TM+L+ ++ + ILIDSG+T+NF+ L +PG V + NG
Sbjct: 376 ITGVTSKGTMKLKGHVNGREVVILIDSGATNNFISQVLVDELQLSIDPGTRFGVTIGNGN 435
Query: 144 KLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203
+ G CK V+++L+ I A F + L D VLG QWL + G++ + + M F
Sbjct: 436 QCEGSGICKRVKVKLKELTIVADFLAVELGTVDLVLGMQWLDSTGTMKVHWPSLTMTFWM 495
Query: 204 DGHQVTLRG 212
G ++ L+G
Sbjct: 496 KGRRIILKG 504
>gi|387965727|gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris subsp. vulgaris]
Length = 1631
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 10/202 (4%)
Query: 41 QKYTFGHKCKK----LFLIEAEEGDEPKE----HEKEKDVTQETPA-ISLHALARVQSPQ 91
+K+ GH+C++ + +E E DE + E T+E P +SL+++ + +P+
Sbjct: 422 EKWGVGHQCRRKELSVLFMEDNEEDELEGALSGSEAPPSPTEEIPPEVSLNSVIGLSNPK 481
Query: 92 TMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRC 151
TM+L I + ++ID G+THNFL K G+ V + +G+ + G C
Sbjct: 482 TMKLSGLIDNHEVVVMIDPGATHNFLSLKAIDKLGIPVTESEEFGVSLGDGQAVRGTGIC 541
Query: 152 KGVQLQLQGTQIEAYFYL-LSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
+ V L L G + +L L L D +LG QWL TLG+++ ++ +M F G TL
Sbjct: 542 RAVALYLDGGLVVVEDFLPLGLGNSDVILGVQWLETLGTVVSNWKTQKMSFQLGGVPYTL 601
Query: 211 RGATTSELKAIEGDTIQKTLRK 232
G T + + +TLRK
Sbjct: 602 TGDPTLARSKVSLKAMLRTLRK 623
>gi|449470602|ref|XP_004153005.1| PREDICTED: uncharacterized protein LOC101220479 [Cucumis sativus]
Length = 583
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 16/188 (8%)
Query: 41 QKYTFGHKCK-------KLFLIEAEEGDEPKEHEKEKDVTQETP---------AISLHAL 84
+KY+ GHKCK L ++ EE +E + +++ P I L +
Sbjct: 282 EKYSLGHKCKVREKRELMLLILNEEESNEKEATIEDEVEEVIEPNHLELNMDNPIELRLI 341
Query: 85 ARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEK 144
V S TM+L+ ++ + ILIDSG+T+NF+ L +PG V + NG +
Sbjct: 342 TGVTSKGTMKLKGHVNGREVVILIDSGATNNFISQVLVDELQLSIDPGTRFGVTIGNGNQ 401
Query: 145 LTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD 204
G CK V+++L+ I A F + L D VLG QWL + G++ + + M F
Sbjct: 402 CEGSGICKRVKVKLKELTIVADFLAVELGTVDLVLGMQWLDSTGTMKVHWPSLTMTFWMK 461
Query: 205 GHQVTLRG 212
G ++ L+G
Sbjct: 462 GRRIILKG 469
>gi|449501536|ref|XP_004161395.1| PREDICTED: enzymatic polyprotein-like [Cucumis sativus]
Length = 740
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 105/209 (50%), Gaps = 18/209 (8%)
Query: 41 QKYTFGHKCKK-------LFLIEAEEGDEPKEHEKEK----------DVTQETPAISLHA 83
+KY+ GH+C+ LF++ EEG+E + KE D+ ++ I L+
Sbjct: 266 EKYSSGHRCRMKEKRELMLFIMNEEEGNEEENMIKENTEAVLELNNLDLNKKK-EIELNT 324
Query: 84 LARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE 143
+ + S TM+L+ I + +LIDSG+THNF+H+K + + SE + + +G
Sbjct: 325 ITGLTSKGTMKLRGEIEGREVVVLIDSGATHNFVHYKIIEEMKIPSEADTTFAATIGDGT 384
Query: 144 KLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203
G CK ++++LQG + A F L+ L DA+LG QWL T G++ + + M F
Sbjct: 385 CCKGRGLCKRLEVKLQGITVVADFLLIELGNVDAILGMQWLDTTGTMKIHWPSLTMSFWV 444
Query: 204 DGHQVTLRGATTSELKAIEGDTIQKTLRK 232
Q+ L+G + TI+KT K
Sbjct: 445 GRKQIELKGDPSLIRAECSLKTIEKTWEK 473
>gi|261865347|gb|ACY01928.1| hypothetical protein [Beta vulgaris]
Length = 1583
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 14/205 (6%)
Query: 41 QKYTFGHKCKK--LFLIEAE-----------EGDEPKEHEKEKDVTQETPAISLHALARV 87
+K+ GH+CKK L ++ E +P H + + +P ISL+++ +
Sbjct: 356 EKWAIGHRCKKKELSILLGHEEEEEEYGSLMENIQPA-HPDDSQLEIHSPEISLNSVMGI 414
Query: 88 QSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTS 147
SP+T++++ +I + +++D G+THNF+ + + V + G +
Sbjct: 415 SSPKTLKMEGTIYGQKVIVMVDPGATHNFISLDTVRRLQIPISSSRPFGVSLGTGAEAHG 474
Query: 148 PGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQ 207
G CK V L LQG + + L+L D +LG QWL LG+++ ++ +Q+ +
Sbjct: 475 QGECKAVPLHLQGVCVMEDYLPLTLGNSDLILGVQWLEKLGTMVTNWKTQTLQYKEGNET 534
Query: 208 VTLRGATTSELKAIEGDTIQKTLRK 232
VTLRG + + +TLRK
Sbjct: 535 VTLRGNPALSRTEVSLKAMYRTLRK 559
>gi|224132328|ref|XP_002321312.1| predicted protein [Populus trichocarpa]
gi|222862085|gb|EEE99627.1| predicted protein [Populus trichocarpa]
Length = 425
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 100/196 (51%), Gaps = 12/196 (6%)
Query: 46 GHKC--KKLFLIEAEEGDEPKEHEKEKDVTQ-------ETPAISLHALARVQSPQTMRLQ 96
G+KC K L +I+ + ++ + E E + + + ++SL+ALA + T+R++
Sbjct: 224 GYKCGVKGLHMIDGNKEEDFLDVEAENIIEKLMKNKKIKEYSLSLNALADNYAHNTIRIR 283
Query: 97 SSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQL 156
+ L ILIDSGSTHNF+ A + E +L+V +ANG + +
Sbjct: 284 GNYHGRELVILIDSGSTHNFIDEHIAGELQISIERSLVLTVTIANGSTILCDSYTTEFKW 343
Query: 157 QLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATT- 215
+Q + +L L CD VLG WL + +L+DF K+++ F K+G + LRG
Sbjct: 344 FMQNYEFVVDLKILKLGRCDVVLGMDWLNS--QLLFDFIKIKISFRKEGRMIELRGIVEG 401
Query: 216 SELKAIEGDTIQKTLR 231
+ L+ I + +QK LR
Sbjct: 402 ANLQCITVEKVQKNLR 417
>gi|78183241|emb|CAJ00278.1| hypothetical protein [Lotus japonicus]
Length = 1508
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 96/204 (47%), Gaps = 28/204 (13%)
Query: 41 QKYTFGHKCKK------LFL----IEAEEGDEPKEHEKEKDVTQETPAISLHAL------ 84
+KYT GH C + F+ +E+EE E E E +V P +SL+AL
Sbjct: 308 EKYTPGHDCPQRKKSQVFFMAVDGLESEELLEGVEQESRPEVN--VPKVSLNALHGDSIS 365
Query: 85 -----ARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCL--LSV 137
+ P MRL + K + +LID+GSTHNF++ K GL S+ CL + +
Sbjct: 366 LDALDGDSEYPM-MRLTGWLGKKRIFVLIDTGSTHNFINQKLCH-EGL-SKIKCLQPVKI 422
Query: 138 VVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKM 197
VA+G + G C+G+ ++QG + L CD +LG QWL G I WDF +
Sbjct: 423 TVADGGIIQGTGWCEGISWKMQGYTFTDNAIAIPLSSCDLILGMQWLRQRGKISWDFTNL 482
Query: 198 EMQFTKDGHQVTLRGATTSELKAI 221
M+F V L+ E K +
Sbjct: 483 IMEFAMGTEMVRLQAMEEKENKLV 506
>gi|147767540|emb|CAN66709.1| hypothetical protein VITISV_006396 [Vitis vinifera]
Length = 1133
Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 53/132 (40%), Positives = 73/132 (55%), Gaps = 4/132 (3%)
Query: 51 KLFLIEAEEGDEPKEHEKE--KDVTQE--TPAISLHALARVQSPQTMRLQSSISKASLTI 106
+LF+IEA D + + + +V QE P ISLHA A +++P T + S + +
Sbjct: 1002 RLFMIEATCDDSENDEDMKIVSEVQQEDVKPEISLHATAGLKAPNTTTMTGSFLFQPMEV 1061
Query: 107 LIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAY 166
LIDSGSTHNF+ A+ G + + V+VA+GEKL S G C VQL+LQ I
Sbjct: 1062 LIDSGSTHNFISVLVAECVGFNLKQDRKMEVMVASGEKLVSLGSCSNVQLKLQKVTIVVK 1121
Query: 167 FYLLSLEGCDAV 178
F +L LE D V
Sbjct: 1122 FLVLPLEDFDVV 1133
>gi|253761750|ref|XP_002489250.1| hypothetical protein SORBIDRAFT_0012s014620 [Sorghum bicolor]
gi|241947110|gb|EES20255.1| hypothetical protein SORBIDRAFT_0012s014620 [Sorghum bicolor]
Length = 1445
Score = 86.3 bits (212), Expect = 9e-15, Method: Composition-based stats.
Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 13/191 (6%)
Query: 43 YTFGHKCKKLFLIEA----EEGDEPK---------EHEKEKDVTQETPAISLHALARVQS 89
YT GH C++L + A EE +P+ E ++ A+SLHA A +++
Sbjct: 747 YTSGHVCQRLLYLAADDYIEEAVQPQGDVAAPALQEAAAPEEEVANVLAVSLHAFAGIRT 806
Query: 90 PQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPG 149
TM L I + L+D+GSTHNFL + GL + G L V VANG+KL G
Sbjct: 807 TNTMLLPVLIKGECVLALLDTGSTHNFLSGAIMERLGLVPDGGDQLRVTVANGDKLRCAG 866
Query: 150 RCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVT 209
+ V + ++G + L D +LG +L TLG I WD + M F + G +
Sbjct: 867 IARNVPISIEGETFAITCADIDLGCFDFILGYDFLRTLGPITWDLEAKTMAFWRGGCGIQ 926
Query: 210 LRGATTSELKA 220
+G ++ A
Sbjct: 927 WKGVGGADTPA 937
>gi|449479937|ref|XP_004155752.1| PREDICTED: uncharacterized protein LOC101232675 [Cucumis sativus]
Length = 436
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 84/172 (48%), Gaps = 17/172 (9%)
Query: 41 QKYTFGHKCK-----KLFLIEAEEGDEPKEH-------EKEKDVTQETPAISLHALARVQ 88
+KY+ GH+CK +L L E E G E + E + V ET I L L +
Sbjct: 100 EKYSLGHRCKMREKRELILNEEESGGEEVKMEETEEVIELNQLVVAETTEIELKTLTGLT 159
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
S TM+L+ + + ILIDSG+T+NF+H A GL E G V V +G +
Sbjct: 160 SKGTMKLKGHVKGREVVILIDSGATNNFIHEAVAMEGGLSIELGTQFGVTVGDGTRCKGK 219
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSI-----LWDFD 195
G C+ V+ +L+ + F ++ L D VLG QWL T G++ WD +
Sbjct: 220 GICRKVEPRLKEMTVITDFLVVELGNIDVVLGMQWLDTTGTMKTLEKTWDIE 271
>gi|77555174|gb|ABA97970.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1548
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 22/222 (9%)
Query: 13 LARAGHLTDKQEAE--CFISGLKDGLRTDVQKYTFGHKCKK--------LFLIEAEE--G 60
L +A L + + A+ CF G +KY GH C K L + E E
Sbjct: 336 LWKAQQLKEYRRAQGLCFKCG---------EKYAPGHVCAKQEGVQLKALHVQEESEVLS 386
Query: 61 DEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHK 120
DE + DV+ ++ ++SLHA+A T++L++ + + IL+DSGSTH+F+
Sbjct: 387 DEVLDAITALDVSSDSISLSLHAMAGTCPSHTVQLRALVQNQVIIILVDSGSTHSFIDAG 446
Query: 121 FAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLG 180
L +E SV VANGE L + +QG + +L + G D VLG
Sbjct: 447 LCHRLQLSTESIQPTSVRVANGETLCCEAKVPQFAWWVQGHEFSFPMRVLPMGGYDLVLG 506
Query: 181 AQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTS-ELKAI 221
WL + D+ ++QF+ +G +TL+G TS EL+ +
Sbjct: 507 MDWLTQFSPMTCDWAAKQLQFSYNGSVITLKGIQTSDELRPV 548
>gi|147854459|emb|CAN78588.1| hypothetical protein VITISV_043911 [Vitis vinifera]
Length = 2232
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 18/196 (9%)
Query: 41 QKYTFGHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAI---------SLHALARVQSPQ 91
+K++ GH+CKK + DE ++ + D E PA+ SL+++ + +P
Sbjct: 998 EKFSPGHRCKKELRVLLVHEDEEEDDNQFDDRATEEPALIELKDAVELSLNSVVGLTTPG 1057
Query: 92 TMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRC 151
TM+++ +I + IL+DSG+THNFL + + L V++ G + G C
Sbjct: 1058 TMKIKGTIGSKEVIILVDSGATHNFLSLELVQQLTLPLTTTTSYGVMMGTGISVKGKGIC 1117
Query: 152 KGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLR 211
+GV + +QG + F L L D +LG WL TLG + ++ + M+ + L+
Sbjct: 1118 RGVCISMQGLTVVEDFLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVMVLK 1177
Query: 212 G---------ATTSEL 218
G +TTS+L
Sbjct: 1178 GDPSLSRTETSTTSDL 1193
>gi|147806355|emb|CAN67624.1| hypothetical protein VITISV_037284 [Vitis vinifera]
Length = 921
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 104/253 (41%), Gaps = 37/253 (14%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDV---QKYTFGHKCKKLFLIEAE 58
V+ Y FE+L + L + CFI+GL+D +R D Q + LIE
Sbjct: 73 VAAYHETFEKLSHQVDGLPEAFLVGCFITGLRDXIRLDXKIKQPKVLAYAIGVARLIE-- 130
Query: 59 EGDEPKEHEKEKDVTQETPAISL-----HALARVQSPQTMRLQSSISKASLT-------- 105
EG++ K ++ P IS ++ + V SP + S + +
Sbjct: 131 EGNQ--LQRKLNYPSRPQPVISTSRAGPNSTSGVLSPPPNQRGSQSANVNPNTFRXITNQ 188
Query: 106 -----------------ILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+ D GSTHNF+ GL P V+VAN EK+
Sbjct: 189 EARERREKRLCYYCDDKFVPDGGSTHNFIDQAIVTXHGLPIIPAKKFQVMVANXEKIXCV 248
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
G C V + +QG I A +Y+L + C VLG QWL TLG I D+ K+ M +
Sbjct: 249 GLCPTVTISIQGKSITADYYVLPVSXCQLVLGVQWLETLGPIEMDYKKLTMTYKIGEKSC 308
Query: 209 TLRGATTSELKAI 221
+G + L+A+
Sbjct: 309 IFQGLKHAALEAL 321
>gi|242095932|ref|XP_002438456.1| hypothetical protein SORBIDRAFT_10g020014 [Sorghum bicolor]
gi|241916679|gb|EER89823.1| hypothetical protein SORBIDRAFT_10g020014 [Sorghum bicolor]
Length = 1414
Score = 84.3 bits (207), Expect = 4e-14, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 75/178 (42%), Gaps = 41/178 (23%)
Query: 41 QKYTFGHK--CKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSS 98
+ Y+ GH C+++F IE E DE E E P SLHA+A V T++L+ +
Sbjct: 285 EPYSRGHNRVCRRIFYIEGVELDEGAAAE-------EAPVFSLHAVAGVPGTNTIQLRVT 337
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
+ A LID+GSTH+F+ A+ TGL EP L+ VANG
Sbjct: 338 VGAAEFIALIDTGSTHSFIGEDAARRTGLTIEPRPGLTATVANGY--------------- 382
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTS 216
D VLG W+ LG I W+ M F G + RG +
Sbjct: 383 -----------------DVVLGTNWMAPLGDITWNLTAGTMAFQHAGRSICWRGTAPT 423
>gi|224109270|ref|XP_002333289.1| predicted protein [Populus trichocarpa]
gi|222835888|gb|EEE74309.1| predicted protein [Populus trichocarpa]
Length = 425
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Query: 41 QKYTFGHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSIS 100
+K+T GHKC+K L+ E GD+ + +++ + P ISLHA+ +TMR+ + I
Sbjct: 298 EKFTPGHKCQKPRLLLLE-GDDETSLQDDEEFEGDEPQISLHAITGWSIARTMRIMARIE 356
Query: 101 KASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQ 159
LT+LIDSGSTHNF+ + A L P +V VANG L GR + + + LQ
Sbjct: 357 NQDLTVLIDSGSTHNFISERIANWLHLPVIPTQPFNVKVANGNPLKCQGRFENIHVLLQ 415
>gi|78183245|emb|CAJ00275.1| hypothetical protein [Lotus japonicus]
Length = 1112
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 78 AISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCL--L 135
+ISL AL MRL + K + +LID+GSTHNF++ K GL S+ CL +
Sbjct: 363 SISLDALDGDSEYPMMRLTGWLGKKRIFVLIDTGSTHNFINQKLCH-EGL-SKIKCLQPV 420
Query: 136 SVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFD 195
+ VA+G + G C+G+ ++QG + L CD +LG QWL G I WDF
Sbjct: 421 KITVADGGIIQGTGWCEGISWKMQGYTFTDNAIAIPLSSCDLILGMQWLRQRGKISWDFT 480
Query: 196 KMEMQFTKDGHQVTLRGATTSELKAI 221
+ M+F V L+ E K +
Sbjct: 481 NLIMEFAMGTEMVRLQAMEEKENKLV 506
>gi|78183249|emb|CAJ00277.1| hypothetical protein [Lotus japonicus]
Length = 1508
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 78 AISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCL--L 135
+ISL AL MRL + K + +LID+GSTHNF++ K GL S+ CL +
Sbjct: 363 SISLDALDGDSEYPMMRLTGWLGKKRIFVLIDTGSTHNFINQKLCH-EGL-SKIKCLQPV 420
Query: 136 SVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFD 195
+ VA+G + G C+G+ ++QG + L CD +LG QWL G I WDF
Sbjct: 421 KITVADGGIIQGTGWCEGISWKMQGYTFTDNAIAIPLSSCDLILGMQWLRQRGKISWDFT 480
Query: 196 KMEMQFTKDGHQVTLRGATTSELKAI 221
+ M+F V L+ E K +
Sbjct: 481 NLIMEFAMGTEMVRLQAMEEKENKLV 506
>gi|227438239|gb|ACP30609.1| disease resistance protein [Brassica rapa subsp. pekinensis]
Length = 2726
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 19/202 (9%)
Query: 22 KQEAECFISGLKDGLRTDVQKYTFGHKC--KKLFLIEAEEGDEPKEHEKEKD-------- 71
++E CF G K +T HKC K + ++ G + + E ++D
Sbjct: 1512 RKEFICFKCGAKG--------WTRAHKCPNKDVRVMTTLNGLQMEVVEDQEDDGEEFFFE 1563
Query: 72 -VTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSE 130
QE +SL++ V SP+T +L I K + +++DSG++HNF+ LK
Sbjct: 1564 AQMQELCTLSLNSYLGVGSPKTTKLYGKIQKTDVIVMLDSGASHNFITPSIVTKLKLKVC 1623
Query: 131 PGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSI 190
+++ NG + S G C+ V QL + F L L D +LG QWL TLG
Sbjct: 1624 AETSFDILLGNGASVNSLGVCREVSFQLADATFTSDFIALELGMVDVILGIQWLETLGRC 1683
Query: 191 LWDFDKMEMQFTKDGHQVTLRG 212
D+ + E+ F G +VTL G
Sbjct: 1684 EVDWKEQELSFIHGGVKVTLFG 1705
>gi|208609065|dbj|BAG72154.1| hypothetical protein [Lotus japonicus]
Length = 1558
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 75/137 (54%)
Query: 79 ISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVV 138
+SL++ R+ S ++ +++ I + ILID G+T NF+ + V
Sbjct: 411 LSLNSKERLTSNRSFKVKGKIGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVE 470
Query: 139 VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKME 198
V NG K + G CK ++L++QG I +F++L L G + VLG WL +LG+I +F ++
Sbjct: 471 VGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELI 530
Query: 199 MQFTKDGHQVTLRGATT 215
+Q+ G ++ L+G +
Sbjct: 531 IQWVSQGQKMVLQGEPS 547
>gi|78183243|emb|CAJ00274.1| hypothetical protein [Lotus japonicus]
Length = 1508
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 78 AISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCL--L 135
+ISL AL MRL + K + +LID+GSTHNF++ K GL S+ CL +
Sbjct: 363 SISLDALDGDSEYPMMRLTGWLGKKRIFVLIDTGSTHNFINQKLCH-EGL-SKIKCLQPV 420
Query: 136 SVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFD 195
+ VA+G + G C+G+ ++QG + L CD +LG QWL G I WDF
Sbjct: 421 KITVADGGIIQGTGWCEGISWKMQGYTFTDNAIAIPLSSCDLILGMQWLRQRGKISWDFT 480
Query: 196 KMEMQFTKDGHQVTLRGATTSELKAI 221
+ M+F V L+ E K +
Sbjct: 481 NLIMEFAVGTEMVRLQAMEEKENKLV 506
>gi|147802351|emb|CAN77123.1| hypothetical protein VITISV_013625 [Vitis vinifera]
Length = 439
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 65/128 (50%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P T+R+ + LT+LID +THNF+ GL + VVVAN E +
Sbjct: 271 NPPTLRVLGRLKNKYLTVLIDDNNTHNFIDQIVVSRFGLLVVREKKIQVVVANQEWIECM 330
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
G+ G+ L +Q + A +Y+L + C VLG QWL TLGSI D+ + M F G +
Sbjct: 331 GQFLGLTLIIQEIPVTADYYILPMAACQVVLGVQWLETLGSIESDYKALTMSFKLGGARH 390
Query: 209 TLRGATTS 216
T G S
Sbjct: 391 TFHGVDGS 398
>gi|18855070|gb|AAL79762.1|AC096687_26 putative polyprotein [Oryza sativa Japonica Group]
gi|108711868|gb|ABF99663.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1087
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 21/216 (9%)
Query: 13 LARAGHLTDKQEAE--CFISGLKDGLRTDVQKYTFGHKCKK-----LFLIEAEE-----G 60
L +A L + + A+ CF G KY GH C K L +E +E
Sbjct: 330 LWKAQQLKEYRRAQGLCFKCG---------DKYIPGHVCSKQETPQLKAMELQEEAIVLT 380
Query: 61 DEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHK 120
DE + ++++++ +SLHALA ++L++ S L +L+DSGS+H+F++
Sbjct: 381 DELLDAVTGLELSEDSANLSLHALAGTSHTNIVQLRALSSNQVLIVLVDSGSSHSFINSA 440
Query: 121 FAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLG 180
L SEP SV VANGE L + +QG Q +L + G D VLG
Sbjct: 441 LCHRLHLLSEPIPPTSVRVANGEVLVCDAKISQFDWWVQGHQFSFPVRVLPMGGYDLVLG 500
Query: 181 AQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTS 216
WL + D+ +QF+ G + L+G +S
Sbjct: 501 MDWLTQYSPMTCDWAAKWLQFSYQGSLIKLQGIQSS 536
>gi|15042811|gb|AAK82434.1|AC091247_1 putative polyprotein, 5'-partial [Oryza sativa Japonica Group]
Length = 799
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 21/216 (9%)
Query: 13 LARAGHLTDKQEAE--CFISGLKDGLRTDVQKYTFGHKCKK-----LFLIEAEE-----G 60
L +A L + + A+ CF G KY GH C K L +E +E
Sbjct: 42 LWKAQQLKEYRRAQGLCFKCG---------DKYIPGHVCSKQETPQLKAMELQEEAIVLT 92
Query: 61 DEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHK 120
DE + ++++++ +SLHALA ++L++ S L +L+DSGS+H+F++
Sbjct: 93 DELLDAVTGLELSEDSANLSLHALAGTSHTNIVQLRALSSNQVLIVLVDSGSSHSFINSA 152
Query: 121 FAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLG 180
L SEP SV VANGE L + +QG Q +L + G D VLG
Sbjct: 153 LCHRLHLLSEPIPPTSVRVANGEVLVCDAKISQFDWWVQGHQFSFPVRVLPMGGYDLVLG 212
Query: 181 AQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTS 216
WL + D+ +QF+ G + L+G +S
Sbjct: 213 MDWLTQYSPMTCDWAAKWLQFSYQGSLIKLQGIQSS 248
>gi|147840922|emb|CAN73185.1| hypothetical protein VITISV_028246 [Vitis vinifera]
Length = 674
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 82/188 (43%), Gaps = 22/188 (11%)
Query: 4 EYQTRFERLLARAGHLTDKQEAECFISGLK----DGLRTDVQKYTFGHKCKKLFLIEAEE 59
EYQ FERL R T K F+ LK DG+R + + +E
Sbjct: 328 EYQKEFERLGNRVQGWTQKALVGTFMGRLKSEIADGIRIN----------------QTKE 371
Query: 60 GDEPKEHEKEKDV--TQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFL 117
D E + KD Q +S+HAL SP+TMR+ ++I + LID+G THNFL
Sbjct: 372 YDVVDEKLQMKDTLGDQVKLEVSIHALTSWASPRTMRVAAAIGSQHMIALIDNGFTHNFL 431
Query: 118 HHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDA 177
K A+ L P ++ VA+ E+L G + VQ+ LQG Y L L D
Sbjct: 432 SEKVARFLRLLMVPTKSFAIHVASSERLLCQGHFEKVQMNLQGITFSFTLYSLPLTRLDM 491
Query: 178 VLGAQWLC 185
G C
Sbjct: 492 KNGTWRFC 499
>gi|218200076|gb|EEC82503.1| hypothetical protein OsI_26980 [Oryza sativa Indica Group]
Length = 471
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 1/152 (0%)
Query: 69 EKDVTQ-ETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGL 127
E+D Q E ISL+AL+ T+RL++ + L +L+DSGS+H+FL + FA++ GL
Sbjct: 18 EEDSDQDENCHISLNALSGANHVNTIRLRALVQNKVLLLLVDSGSSHSFLDYNFAQLLGL 77
Query: 128 KSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTL 187
+ +P V VANG+ + QG ++ L G DA+LG WL
Sbjct: 78 QLQPIAPFLVKVANGDCIPCQFVVPQFTWWFQGRTFTYDMRVVPLGGHDAILGMDWLAQW 137
Query: 188 GSILWDFDKMEMQFTKDGHQVTLRGATTSELK 219
G + ++ K ++F G V L+G S K
Sbjct: 138 GDMSCNWAKKTLKFMYQGTWVELQGVPDSPSK 169
>gi|208609055|dbj|BAG72150.1| hypothetical protein [Lotus japonicus]
Length = 1558
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 74/137 (54%)
Query: 79 ISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVV 138
+SL++ + S ++ +++ I + ILID G+T NF+ + V
Sbjct: 411 LSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVE 470
Query: 139 VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKME 198
V NG K + G CK ++L++QG I +F++L L G + VLG WL +LG+I +F ++
Sbjct: 471 VGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELI 530
Query: 199 MQFTKDGHQVTLRGATT 215
+Q+ G ++ L+G +
Sbjct: 531 IQWVSQGQKMVLQGEPS 547
>gi|208609057|dbj|BAG72151.1| hypothetical protein [Lotus japonicus]
Length = 1558
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 74/137 (54%)
Query: 79 ISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVV 138
+SL++ + S ++ +++ I + ILID G+T NF+ + V
Sbjct: 411 LSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVE 470
Query: 139 VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKME 198
V NG K + G CK ++L++QG I +F++L L G + VLG WL +LG+I +F ++
Sbjct: 471 VGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELI 530
Query: 199 MQFTKDGHQVTLRGATT 215
+Q+ G ++ L+G +
Sbjct: 531 IQWVSQGQKMVLQGEPS 547
>gi|208609051|dbj|BAG72148.1| hypothetical protein [Lotus japonicus]
gi|208609062|dbj|BAG72153.1| hypothetical protein [Lotus japonicus]
Length = 1558
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 74/137 (54%)
Query: 79 ISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVV 138
+SL++ + S ++ +++ I + ILID G+T NF+ + V
Sbjct: 411 LSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVE 470
Query: 139 VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKME 198
V NG K + G CK ++L++QG I +F++L L G + VLG WL +LG+I +F ++
Sbjct: 471 VGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELI 530
Query: 199 MQFTKDGHQVTLRGATT 215
+Q+ G ++ L+G +
Sbjct: 531 IQWVSQGQKMVLQGEPS 547
>gi|124359710|gb|ABN06064.1| RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc
finger, CCHC-type; Peptidase aspartic, active site;
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 1297
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Query: 90 PQTMRLQSSISKASLTILIDSGSTHNFLHHKFA-KITGLKSEPGCLLSVVVANGEKLTSP 148
PQ+++L I + + +L+DSG+THNF+ + K+ + C+ S+ + +G +
Sbjct: 176 PQSIKLMGVIKEVPVVVLVDSGATHNFISQQLVHKMNWAVVDTPCM-SIKLGDGSYSKTK 234
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
G C+G+++ + +E L L G D VLG +WL TLG ++ +++K M F + V
Sbjct: 235 GTCEGLEVDVGDVHLEIDAQLFDLGGVDMVLGIEWLRTLGDMIVNWNKQTMSFWHNKKWV 294
Query: 209 TLRGATT 215
T++G T
Sbjct: 295 TVKGMDT 301
>gi|218199564|gb|EEC81991.1| hypothetical protein OsI_25921 [Oryza sativa Indica Group]
Length = 426
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 97/219 (44%), Gaps = 25/219 (11%)
Query: 5 YQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQKYTFGHKCKK---LFLIE----- 56
++ RF+ L A + ECF G +KY GHKC K L ++E
Sbjct: 148 WEERFDSLKA-----ARRARGECFKCG---------EKYGPGHKCPKSVQLHVLEELLEV 193
Query: 57 --AEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTH 114
A+EG+ E E E + E +S A+ +T+RLQ + + +L+DSGS
Sbjct: 194 FLAQEGNSHNEEETE-GTSDEELVLSECAMLGTTGKRTIRLQGLLQNQEILVLVDSGSFS 252
Query: 115 NFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEG 174
NFL + L ++ V +A+G K+ ++ QG +LSL
Sbjct: 253 NFLSEQLVSKLQLPTQTSAPSQVTIADGGKILCNQVVANLEWWCQGHTFSTDLKVLSLGS 312
Query: 175 CDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGA 213
D +LG +WL + D+ + +M FT G+++TL G
Sbjct: 313 YDMILGMEWLEDFSPMWIDWKRKKMTFTYAGNRITLVGV 351
>gi|21397270|gb|AAM51834.1|AC105730_8 Putative plant disease resistance polyprotein [Oryza sativa
Japonica Group]
gi|108706267|gb|ABF94062.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 624
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 22/222 (9%)
Query: 13 LARAGHLTDKQEAE--CFISGLKDGLRTDVQKYTFGHKCKKLFLIEAEEGDEPKEHE--- 67
L +A L D + A+ CF G KYT H+C I+A + +E +
Sbjct: 119 LWKAKQLKDYRRAQGLCFKCG---------DKYTPEHRCAVGGQIKAMQLEEVLTDDILD 169
Query: 68 ----KEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAK 123
E+ +E ISL+AL +RL++ + L +L+DSGS+HNF+ + FA+
Sbjct: 170 VVIAAEQSDDEEDCHISLNALTGAYLLTAIRLRALVHSKVLLLLVDSGSSHNFIDYNFAQ 229
Query: 124 ITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQW 183
+ GL +P V VANG+ L G +QG +++L G DA+LG W
Sbjct: 230 MLGLPLKPIPSTLVKVANGDCLPCQYVVPGFFWWIQGHTFTYDMRVVTLGGHDAILGMDW 289
Query: 184 LCTLGSILWDFDKMEMQFTKDGHQVTLRG----ATTSELKAI 221
L G + + ++F G ++L+G A SE+ A+
Sbjct: 290 LEQWGEMSCHWANKTLKFQYQGSWISLQGVQDAAVPSEIAAV 331
>gi|124360394|gb|ABN08407.1| Peptidase aspartic, active site [Medicago truncatula]
Length = 435
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%)
Query: 91 QTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGR 150
Q +R Q + + + +L+DSG+ NF+ + A GL+ + + + +G + + G
Sbjct: 137 QCIRFQGKVREIPVLMLVDSGANKNFMSRRLALALGLRITETPVRRIRLGDGHVVPTLGE 196
Query: 151 CKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
C GV + +QG + E L L G D VLG WL +G D+ + +M+F G + +
Sbjct: 197 CHGVIISVQGVEWEIDVMLFELRGYDLVLGMAWLTQIGCTCIDWVEKKMRFDYQGEWIEI 256
Query: 211 RGATTSELKAIEG 223
RG T E ++
Sbjct: 257 RGIRTRECTPLQN 269
>gi|124360392|gb|ABN08405.1| Peptidase aspartic, active site [Medicago truncatula]
Length = 435
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%)
Query: 91 QTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGR 150
Q +R Q + + + +L+DSG+ NF+ + A GL+ + + + +G + + G
Sbjct: 137 QCIRFQGKVREIPVLMLVDSGANKNFMSRRLALALGLRITETPVRRIRLGDGHVVPTLGE 196
Query: 151 CKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
C GV + +QG + E L L G D VLG WL +G D+ + +M+F G + +
Sbjct: 197 CHGVIISVQGVEWEIDVMLFELRGYDLVLGMAWLTQIGCTCIDWVEKKMRFDYQGEWIEI 256
Query: 211 RGATTSELKAIEG 223
RG T E ++
Sbjct: 257 RGIRTRECTPLQN 269
>gi|208609049|dbj|BAG72147.1| hypothetical protein [Lotus japonicus]
gi|208609053|dbj|BAG72149.1| hypothetical protein [Lotus japonicus]
Length = 1520
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 74/137 (54%)
Query: 79 ISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVV 138
+SL++ + S ++ +++ I + ILID G+T NF+ + V
Sbjct: 373 LSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATINFISQDLVVELEIPVIATSEYVVE 432
Query: 139 VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKME 198
V NG K + G CK ++L++QG I +F++L L G + VLG WL +LG+I +F ++
Sbjct: 433 VGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELI 492
Query: 199 MQFTKDGHQVTLRGATT 215
+Q+ G ++ L+G +
Sbjct: 493 IQWVSQGQKMVLQGEPS 509
>gi|62733109|gb|AAX95226.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1513
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 114/264 (43%), Gaps = 39/264 (14%)
Query: 1 MVSEYQTRFERL--LARAGH--LTDKQEAECFISGLKDGLRTDVQKYTFGHKCKKLFLIE 56
+V Y +FE L R H L ++ CFI GL+ ++ D + + GH+CK +
Sbjct: 323 IVEHYIDKFEEYMDLVRRDHPYLQEQYLNSCFIGGLRSDIKHD-EAWFPGHQCKVKKALN 381
Query: 57 AEE------------GDEPKEHEKEKDVTQETP---------AISLHALARVQSPQTMRL 95
A G E K EK + T+ P +S +A+ P T +
Sbjct: 382 ALLLEEEEYEGTEEVGREKKAQEKVLEETEHAPEEIDQEELMYVSQNAMQGATRPDTFSV 441
Query: 96 QSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLL------SVVVANGEKLTSPG 149
I+ L+DSGS F+ ++A ++++ C L VVVA G +L S
Sbjct: 442 IIQINGRRAVGLVDSGSPSTFMDQEYA----IRND--CPLVSTDSKKVVVAGGGELKSEV 495
Query: 150 RCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVT 209
+ + Q+QG F L+ L+G D +LGA W+ I D K E+ TK +T
Sbjct: 496 QVPDILYQIQGETFSNKFNLIPLKGYDIILGADWIYKYSPITLDLKKRELGITKGEKVIT 555
Query: 210 LRGAT-TSELKAIEGDTIQKTLRK 232
L+ T T + ++ + K +RK
Sbjct: 556 LQDFTNTGKHLLVDSSKVDKIIRK 579
>gi|297608672|ref|NP_001061948.2| Os08g0451600 [Oryza sativa Japonica Group]
gi|215768264|dbj|BAH00493.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255678494|dbj|BAF23862.2| Os08g0451600 [Oryza sativa Japonica Group]
Length = 707
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 96/213 (45%), Gaps = 18/213 (8%)
Query: 13 LARAGHLTDKQEAE--CFISGLKDGLRTDVQKYTFGHKC------KKLFLIEAEEGDEPK 64
L +A L D + A CF G KY+ H+C K + + E D
Sbjct: 73 LWKARQLRDYRRANGLCFKCG---------DKYSPEHQCALGGQIKAMQVTEVIPDDLLN 123
Query: 65 EHEKEKDVTQ-ETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAK 123
E+D Q E ISL++L+ T+RL++ + L +L+DSGS+H+FL + FA+
Sbjct: 124 AVTAEEDSDQDENCHISLNSLSGASHVNTIRLRALVQNKVLLLLVDSGSSHSFLDYNFAQ 183
Query: 124 ITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQW 183
+ GL+ +P V VANG+ + QG ++ L G DA+LG W
Sbjct: 184 LLGLQLQPIAPSLVKVANGDCIHCQFMVPQFTWWFQGRTFTYDMRVVPLGGHDAILGMDW 243
Query: 184 LCTLGSILWDFDKMEMQFTKDGHQVTLRGATTS 216
L G + ++ ++F G V L+G S
Sbjct: 244 LAQWGDMSCNWANKTLKFMYQGTWVELQGVPDS 276
>gi|449526146|ref|XP_004170075.1| PREDICTED: uncharacterized protein LOC101232562, partial [Cucumis
sativus]
Length = 497
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 74/139 (53%)
Query: 74 QETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGC 133
Q +S++++ R+ +P TM+++ + + +L+D G+THNF+ + + ++
Sbjct: 42 QTVVELSINSVVRLSNPGTMKVKGKLLGKEIIVLVDCGATHNFISESLVEELQISTKSTT 101
Query: 134 LLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWD 193
V++ +G + G C+ +++ + ++ F L L DA+LG QWL +LG D
Sbjct: 102 NFGVILGSGTAIKGKGVCEAIEMIIGEWRVIDDFLPLELGSVDAILGMQWLYSLGITEVD 161
Query: 194 FDKMEMQFTKDGHQVTLRG 212
+ + + FT G ++ +RG
Sbjct: 162 WKNLILTFTHHGEKIVIRG 180
>gi|449523988|ref|XP_004169005.1| PREDICTED: uncharacterized protein LOC101225033 [Cucumis sativus]
Length = 307
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 96/196 (48%), Gaps = 27/196 (13%)
Query: 11 RLLARAGHLTDKQEAECFISGLKDGLRTDVQKYTFGHKCK-------KLFLI-------E 56
R L+ A + +++ CF+ +KY+ HKCK ++ L+
Sbjct: 87 RRLSDAEFQSRREKGLCFLCN---------EKYSHDHKCKAKEQRELRMILVTKEGEEFN 137
Query: 57 AEEGDEPKEHE-KEKDVTQETPAI---SLHALARVQSPQTMRLQSSISKASLTILIDSGS 112
EEG ++ E +V +E+ A+ S++++ + +P+TM++ + + IL+D G+
Sbjct: 138 IEEGGGNEQSELNTIEVVEESHAVVELSINSVVGLSNPRTMKVNGWLQGKEVIILVDRGA 197
Query: 113 THNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSL 172
THN + K K L ++ +V++ +G + G C+ V+L + ++ F L L
Sbjct: 198 THNLISEKLVKELQLNTKDTSNYAVILGSGTTIKGKGVCEAVELMIGDWRVIDEFLPLEL 257
Query: 173 EGCDAVLGAQWLCTLG 188
G D +LG QWL +LG
Sbjct: 258 GGVDVILGMQWLYSLG 273
>gi|147786921|emb|CAN64438.1| hypothetical protein VITISV_011230 [Vitis vinifera]
Length = 361
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 42 KYTFGHKCK--KLFLIEAEEGDEPKEHEKEKDVTQET-PAISLHALARVQSPQTMRLQSS 98
K T GH+CK +L L+E D+ + KE + + P ISLHAL + +TMR+ +
Sbjct: 242 KSTSGHRCKGPQLLLLEGNINDDSEGDTKEAEADLPSDPEISLHALTGWTATKTMRVTAK 301
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I + +LIDSGSTHNF+ K A + L P V VANG+ L GR + + L
Sbjct: 302 IGTHDIVVLIDSGSTHNFISDKVAALLHLPVVPTAPFHVRVANGQPLKCQGRFDNIHILL 361
>gi|57863925|gb|AAS55774.2| putative polyprotein [Oryza sativa Japonica Group]
Length = 2108
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 29/235 (12%)
Query: 13 LARAGHLTDKQEAECFISGLKDGLRTD------VQKYTFGHKC---------KKLFLIEA 57
L R +L+DK +S L+ R +K++ HKC ++LF +
Sbjct: 1079 LNRGTNLSDK------VSALRSFRRAQGLCYLCAEKWSPTHKCSGTVQLHAVQELFALFP 1132
Query: 58 EEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFL 117
+ +E + +D A+S+HA+ S T+RLQ I ++ +L+DSGS +F+
Sbjct: 1133 DNANEDQASISSEDSDSSLLAMSVHAVQGTDSQSTIRLQGKIQGLNILMLVDSGSLASFI 1192
Query: 118 HHKFA-KITGLK--SEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEG 174
+ A ++TG++ + P LSV VANG+ L + + G + F +++L G
Sbjct: 1193 SDQLADRLTGVQFLAHP---LSVKVANGQVLHCQKEMPSAEWFVSGQKFLTTFKVVALGG 1249
Query: 175 CDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG--ATTSELKAIEGDTIQ 227
DA+LG WL + D+ + T GH+V LRG + TS+ I +Q
Sbjct: 1250 YDAILGMDWLTKYSPMQIDWQLKSIHLTVMGHEVLLRGVQSDTSDCALISSQHLQ 1304
>gi|28209489|gb|AAO37507.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1155
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 22/222 (9%)
Query: 13 LARAGHLTDKQEAE--CFISGLKDGLRTDVQKYTFGHKCKKLFLIEAEEGDEPKEHE--- 67
L +A L D + A+ CF G KYT H+C I+A + +E +
Sbjct: 313 LWKAKQLKDYRRAQGLCFKCG---------DKYTPEHRCAVGGQIKAMKLEEVLTDDILD 363
Query: 68 ----KEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAK 123
E+ +E ISL+A P + L++ + L +L+DSGS+H+F+ + FA
Sbjct: 364 AVIAAEQSDDEEDCHISLNAFTGAHLPTAIHLRALVHSKVLLLLVDSGSSHSFIDYNFAH 423
Query: 124 ITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQW 183
+ GL +P V VANG+ L +QG +++LEG DA+LG W
Sbjct: 424 MLGLPLKPIPSTLVKVANGDCLPCQYVVPSFSWWIQGHTFTYDMRVVTLEGHDAILGMDW 483
Query: 184 LCTLGSILWDFDKMEMQFTKDGHQVTLRG----ATTSELKAI 221
L G + + ++F G ++L+G A SE+ A+
Sbjct: 484 LEQWGEMSCHWANKTLKFQYQGSWISLQGVQDAAVPSEIAAV 525
>gi|31432119|gb|AAP53789.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1611
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 75/148 (50%)
Query: 67 EKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITG 126
E+ ++V +E +IS A+ + P T + ++ L+DSGST F+ KFA +
Sbjct: 483 EQTENVQEELMSISQSAVYGLTRPDTFSVMIKVNGKKAVGLVDSGSTTTFMDSKFAIKSQ 542
Query: 127 LKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCT 186
E + V+VA G +L S G++ ++QG F LLSLE D +LGA W+
Sbjct: 543 CTLENTKMRKVIVAGGGELKSELIVPGMEYEIQGESFTNSFNLLSLERYDIILGADWIFK 602
Query: 187 LGSILWDFDKMEMQFTKDGHQVTLRGAT 214
I D K EM+ TK G ++ ++ T
Sbjct: 603 YSPITLDLRKREMKITKGGRELEIQDFT 630
>gi|449511951|ref|XP_004164098.1| PREDICTED: uncharacterized protein LOC101232566 [Cucumis sativus]
Length = 707
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 78/145 (53%), Gaps = 3/145 (2%)
Query: 71 DVTQETPAI---SLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGL 127
+V QE A+ S++++ + +P+TM+++ + + +LID +THNF+ + +
Sbjct: 386 EVIQEEHAVVELSINSVVGLSNPRTMKVKGKLLGRQIIVLIDCEATHNFIREGLVEELQI 445
Query: 128 KSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTL 187
++ V++ +G + G C+ +++ + ++ F L L G DA+LG QWL +L
Sbjct: 446 STKSTTNYGVILGSGTAIKGKGVCEAIEMMIGEWRVIDDFLPLELGGVDAILGMQWLYSL 505
Query: 188 GSILWDFDKMEMQFTKDGHQVTLRG 212
G D+ + + FT G +V +RG
Sbjct: 506 GITEVDWKNLILTFTHHGEKVVIRG 530
>gi|449526327|ref|XP_004170165.1| PREDICTED: uncharacterized protein LOC101232744 [Cucumis sativus]
Length = 426
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Query: 46 GHKCKK-------LFLIEAEEGDEPKEHEKEKDVTQETPAIS------LHALARVQSPQT 92
GHKCK +F+++ ++ +E + + E + I ++++ + + T
Sbjct: 94 GHKCKAKELRELWMFVVKTDDIEEDEYEQSELKAMELQGEIGGVVELCINSMVGLTNLGT 153
Query: 93 MRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCK 152
M+++ I + +L+D G+THNF+ K + ++ ++ +G + G C+
Sbjct: 154 MKIRGVIEGKEVIVLVDCGATHNFISDKLVMTLHIPTKDTSNYGEILGSGTTIKGKGVCE 213
Query: 153 GVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
V+L L G + A F L L G D +LG QWL +LG D+ + M F + +V + G
Sbjct: 214 QVKLSLNGWTVTADFLPLELGGVDMILGMQWLYSLGVTEVDWKNLVMSFVHNNKKVVIIG 273
>gi|449524806|ref|XP_004169412.1| PREDICTED: uncharacterized protein LOC101228221 [Cucumis sativus]
Length = 703
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 1/157 (0%)
Query: 56 EAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHN 115
E ++ E E E E+ + E +SLH+L SP+T++++ I + +L+D G+ HN
Sbjct: 281 EIDKVAEETEDENEQ-INTEIANLSLHSLVGFSSPKTIKIKGEIRNCEVVVLVDGGAIHN 339
Query: 116 FLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGC 175
F+ + K + E VV+ G + + G CK V L + I F L L
Sbjct: 340 FISEEVVKELKIPVETLDAYGVVLGTGGVVRATGMCKSVNLTIVNLSITHDFLPLPLGSA 399
Query: 176 DAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
D LG WL TLG +++++ EM+F+ V L+G
Sbjct: 400 DVNLGVTWLETLGKVIFNYKLSEMEFSLGEFLVILQG 436
>gi|449504804|ref|XP_004162299.1| PREDICTED: uncharacterized protein LOC101228789 [Cucumis sativus]
Length = 250
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 8/142 (5%)
Query: 92 TMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRC 151
TM+++ I + +L+D G+THNF+ K L ++ V++ +G + G C
Sbjct: 26 TMKIRGEIQGKEVIVLVDCGATHNFISDKLVATLQLPTKDTSNYGVILGSGTAIKGKGVC 85
Query: 152 KGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDK-MEMQFTKDGHQVTL 210
+ V+L L G I F L L G D +LG QWL +LG D+ K +E++ T+ G Q
Sbjct: 86 EQVKLNLNGWMITTDFLPLELGGVDVILGMQWLYSLGVTEVDWKKALEIRITEIGPQ--- 142
Query: 211 RGATTSELKAIEGDTIQKTLRK 232
T E + + +Q LR+
Sbjct: 143 ----TGEGPMVVPERVQGVLRQ 160
>gi|307136175|gb|ADN34016.1| ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]
Length = 1185
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 88/179 (49%), Gaps = 7/179 (3%)
Query: 41 QKYTFGHKCK----KLFLIEAEEGD-EPKEHEKEKDVTQETPAI--SLHALARVQSPQTM 93
+ ++ GH+CK KL ++ + D E E + + + + P + SL ++ + +P T
Sbjct: 311 KPFSKGHRCKNRELKLCVVADDLIDTEMSEEDNDGGMVEIGPIVELSLSSVVGLTAPGTS 370
Query: 94 RLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKG 153
+++ + + ++ID G+THNF+ + + + + V++ +G+ + G C G
Sbjct: 371 KIKGKVEDREVVVMIDCGATHNFISLRLVEEMQIATTETTQYGVIMGSGKAVQGKGMCTG 430
Query: 154 VQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
V + L G + F L L D VLG QWL G++ D+ + M F +V LRG
Sbjct: 431 VVVGLPGLTVVEDFLPLELGHLDMVLGMQWLPKQGAMTVDWRNLAMTFAVRDVKVMLRG 489
>gi|52353389|gb|AAU43957.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1263
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 111/235 (47%), Gaps = 29/235 (12%)
Query: 13 LARAGHLTDKQEAECFISGLKDGLRTD------VQKYTFGHKC---------KKLFLIEA 57
L R +L+DK +S L+ R +K++ HKC ++LF +
Sbjct: 379 LNRGTNLSDK------VSALRSFRRAQGLCYLCAEKWSPTHKCSGTVQLHAVQELFALFP 432
Query: 58 EEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFL 117
+ +E + +D A+S+HA+ S T+RLQ I ++ +L+DSGS+ +F+
Sbjct: 433 DNVNEDQAGISSEDSDSSLLAMSVHAVQGTDSQSTIRLQGKIQGLNILMLVDSGSSASFV 492
Query: 118 HHKFA-KITGLK--SEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEG 174
+ A ++TG++ + P LSV VANG+ L + + G + F +++L G
Sbjct: 493 SDQLADRLTGVQFLAHP---LSVKVANGQVLHCQKEMPSAEWFVSGQKFLTTFKVVALGG 549
Query: 175 CDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG--ATTSELKAIEGDTIQ 227
DA+LG WL + D+ + GH+V LRG + TS+ I +Q
Sbjct: 550 YDAILGMDWLTKYSPMHIDWQLKSIHLIVMGHEVLLRGVQSNTSDCALISSQHLQ 604
>gi|224123438|ref|XP_002330315.1| predicted protein [Populus trichocarpa]
gi|222871350|gb|EEF08481.1| predicted protein [Populus trichocarpa]
Length = 528
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 20/201 (9%)
Query: 22 KQEAECFISGLKDGLRTDVQKYTFGHKC--KKLFLIEAEEGDEPKEHEKEKDVTQETP-- 77
K+ +CF G KYT GH+C K L +IE E +E +E ++ D+ Q+
Sbjct: 334 KRLGQCFKCG---------DKYTPGHRCNTKGLHMIERVEEEEDEEVKELDDIMQDKCKE 384
Query: 78 -------AISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSE 130
+SL+ALA + T+R++ + L I I SGSTH+F+ +
Sbjct: 385 RRLIDEFGLSLNALAENDTCNTIRIKGNCQGRDLIIFIVSGSTHSFIDEGTITELNVAKS 444
Query: 131 PGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSI 190
LL+V VANG + + G +QG + +A +L L+ D +LG WL +
Sbjct: 445 KTMLLAVTVANGTVMLCEMQSPGFTWFMQGYEFKANLRVLKLDRHDIMLGVDWLKQYSPV 504
Query: 191 LWDFDKMEMQFTKDGHQVTLR 211
L+DF K+ + K + L+
Sbjct: 505 LFDFIKLRLSLKKSDRMIELK 525
>gi|10122034|gb|AAG13423.1|AC051634_4 putative plant disease resistance polyprotein [Oryza sativa
Japonica Group]
Length = 894
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 19/228 (8%)
Query: 13 LARAGHLTDKQEAE--CFISGLKDGLRTDVQKYTFGHKCKKLFLIEAEEGDEPKEHE--- 67
L +A L D + A+ CF G KYT H+C I+A + +E +
Sbjct: 313 LWKAKQLKDYRRAQGLCFKCG---------DKYTPEHRCAVGGQIKAMQLEEVLTDDILD 363
Query: 68 ----KEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAK 123
E+ +E ISL+AL P + L++ + L +L+D GS+H+F+ + FA+
Sbjct: 364 AVIAAEQSDDEEDCHISLNALTGAHLPTAILLRALVHSKVLLLLVDYGSSHSFIDYNFAQ 423
Query: 124 ITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQW 183
+ GL +P V VANG+ L G +QG +++L DA+LG W
Sbjct: 424 MLGLPLKPIPSTLVKVANGDCLPCQYVVPGFSWWIQGHTFTYDMRVVTLGVHDAILGMDW 483
Query: 184 LCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKA-IEGDTIQKTL 230
L G + + ++F G ++L+G + + + I D +Q +
Sbjct: 484 LEQWGEMSCHWANKTLKFQYQGSWISLQGVQDAAVPSEIAADDVQHVI 531
>gi|449450213|ref|XP_004142858.1| PREDICTED: uncharacterized protein LOC101220049 [Cucumis sativus]
Length = 250
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 8/142 (5%)
Query: 92 TMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRC 151
TM+++ I + +L+D G+T NF+ K L ++ V++ +G + G C
Sbjct: 26 TMKIRGEIQGKEVIVLVDCGATQNFISDKLVATLQLPTKDTSNYGVILGSGTAIKGKGVC 85
Query: 152 KGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDK-MEMQFTKDGHQVTL 210
+ V+L L G I F L L G D +LG QWL +LG D+ K +E++ T+ G Q
Sbjct: 86 EQVKLNLNGWMITTDFLPLELGGVDVILGMQWLYSLGVTEVDWKKALEIRITEIGPQ--- 142
Query: 211 RGATTSELKAIEGDTIQKTLRK 232
T E + + +Q LR+
Sbjct: 143 ----TGEGPMVVPERVQGVLRQ 160
>gi|359372828|gb|AEV42261.1| hypothetical protein [Beta vulgaris]
Length = 1396
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 14/163 (8%)
Query: 42 KYTFGHKCKKLFLI-------------EAEEGDEPKEHEKEKDVTQETPAISLHALARVQ 88
K++ GH+CKK + E E +P+ T P ISL+++
Sbjct: 314 KWSVGHRCKKELSVLLSCKEDEEIEYGELENAPQPEIPNTHIAETFVNPEISLNSVMGFS 373
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+T++L+ +I ++ ++ID G+THNF+ + + V + G+++
Sbjct: 374 NPKTLKLRGTIYGEAVIVMIDPGATHNFVSIHTVERLNIPVSHAKGFEVSLGTGQEVRGT 433
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
G C V L +QG +E + L D ++G QWL LG+++
Sbjct: 434 GECLAVPLMVQGV-MENFLPPPPLGNSDVIMGIQWLEKLGTMV 475
>gi|57834110|emb|CAE04775.3| OSJNBa0079C19.16 [Oryza sativa Japonica Group]
Length = 1002
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 27/237 (11%)
Query: 6 QTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQKYTFGHKCK---KLFLIEAEEGDE 62
+TR ++LLA + K CF SG +++ HKC +L ++E E +
Sbjct: 661 RTREDKLLALKSYRRSK--GLCFKSG---------ERWGKDHKCAASIQLHVVE-ELLNA 708
Query: 63 PKEHEKEKDVTQETP--------AISLHALARVQSPQTMRLQSSISKASLTILIDSGSTH 114
+ + +E+ + + P +IS +L + S ++RL+ + L +L+DSGSTH
Sbjct: 709 LQFNTEEEKFSGDIPETADDALMSISYQSLNGIDSSTSIRLRGWVQGTELLMLVDSGSTH 768
Query: 115 NFLHHKF-AKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLE 173
+F+ + + GLK P L V +A+G +L+ +QG + F LL L
Sbjct: 769 SFVDERIGSTFIGLKHLPQP-LKVQIADGGQLSCSQVIPKCDWWIQGHNFSSDFRLLPLG 827
Query: 174 GCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGAT--TSELKAIEGDTIQK 228
DA+LG WL + +++ ++F+ G V L+G T TS+ I G+ +Q+
Sbjct: 828 SYDAILGMDWLQQFSPMQIEWNHKWLEFSHLGKVVKLQGITPQTSQCATISGEQLQE 884
>gi|38345213|emb|CAD40196.2| OSJNBb0043H09.2 [Oryza sativa Japonica Group]
Length = 1409
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 27/237 (11%)
Query: 6 QTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQKYTFGHKCK---KLFLIEAEEGDE 62
+TR ++LLA + K CF SG +++ HKC +L ++E E +
Sbjct: 346 RTREDKLLALKSYRRSK--GLCFKSG---------ERWGKDHKCAASIQLHVVE-ELLNA 393
Query: 63 PKEHEKEKDVTQETP--------AISLHALARVQSPQTMRLQSSISKASLTILIDSGSTH 114
+ + +E+ + + P +IS +L + S ++RL+ + L +L+DSGSTH
Sbjct: 394 LQFNTEEEKFSGDIPETADDALMSISYQSLNGIDSSTSIRLRGWVQGTELLMLVDSGSTH 453
Query: 115 NFLHHKF-AKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLE 173
+F+ + + GLK P L V +A+G +L+ +QG + F LL L
Sbjct: 454 SFVDERIGSTFIGLKHLPQP-LKVQIADGGQLSCSQVIPKCDWWIQGHNFSSDFRLLPLG 512
Query: 174 GCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGAT--TSELKAIEGDTIQK 228
DA+LG WL + +++ ++F+ G V L+G T TS+ I G+ +Q+
Sbjct: 513 SYDAILGMDWLQQFSPMQIEWNHKWLEFSHLGKVVKLQGITPQTSQCATISGEQLQE 569
>gi|38346427|emb|CAD40214.2| OSJNBa0019J05.12 [Oryza sativa Japonica Group]
Length = 1817
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 12/165 (7%)
Query: 55 IEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTH 114
+E +G++ E D+ AIS A+ +SP + RL+ + L +L+DSGSTH
Sbjct: 563 VEVSDGEQFLHCEDTSDLM----AISQQAIWGTESPNSFRLRGWVQGTELLMLVDSGSTH 618
Query: 115 NFLHH----KFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLL 170
+F+ K A + L+S+ LSV +A+GE L+ + +QG F LL
Sbjct: 619 SFMEESIGLKLAGVKPLRSK----LSVKLADGETLSCSYEVTNCRWWMQGHNFINNFRLL 674
Query: 171 SLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATT 215
+L G D +LG WL + ++ M T G V L+G +
Sbjct: 675 NLGGYDIILGMDWLEQFSPMQVNWVDKWMDITISGQPVRLQGIVS 719
>gi|449479800|ref|XP_004155711.1| PREDICTED: uncharacterized protein LOC101230021 [Cucumis sativus]
Length = 1480
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 72/134 (53%), Gaps = 3/134 (2%)
Query: 71 DVTQETPAI---SLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGL 127
+V QE A+ S++++ + +P TM+++ + + +LID G+THNF+ + +
Sbjct: 1195 EVIQEEHAVVELSINSVVGLSNPGTMKVKGKLLGREIIVLIDCGATHNFISESLVEELQI 1254
Query: 128 KSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTL 187
++ V++ +G + G C+ +++ + ++ F LL L G DA+LG QWL +L
Sbjct: 1255 STKSTTNYGVILGSGTAIKGKGVCEAIEMMIGEWRVIDDFLLLELGGVDAILGMQWLYSL 1314
Query: 188 GSILWDFDKMEMQF 201
G D+ + + F
Sbjct: 1315 GITEVDWKNLILTF 1328
>gi|147799941|emb|CAN70500.1| hypothetical protein VITISV_020483 [Vitis vinifera]
Length = 672
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 5/174 (2%)
Query: 41 QKYTFGHKCKK-LFLIEAEEGDEPKEHEK-EKDVTQETPAI--SLHALARVQSPQTMRLQ 96
++++ GH+CKK L ++ E +E + + +T+ A+ SL+ + + + +TM+++
Sbjct: 89 KEFSPGHRCKKELRVLPVHENEEDNQFDSGATPLTELKDAVELSLNXMVGLTTSRTMKIK 148
Query: 97 SSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQL 156
+I IL+D G TH+FL + L VV+ G + CKGV +
Sbjct: 149 GTIGSNEXIILVDYGVTHDFLFLDLVQRLALPLTTTTSYGVVMGIGISMKGKSICKGVCI 208
Query: 157 QLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
+QG + F L L D +LG WL TLG + +++ + ++ K G V L
Sbjct: 209 SMQGLIVVEDFVPLELGSTDVILGMPWLGTLGDVEVNWNMLTIKI-KIGKVVIL 261
>gi|38568037|emb|CAD40411.3| OSJNBa0065J03.7 [Oryza sativa Japonica Group]
Length = 1414
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 11/222 (4%)
Query: 2 VSEYQTRFE----RLLARAGHLTDKQEAECFISGLKDGLRTDV-----QKYTFGHKCKKL 52
V+EY RF+ +LLA LT + F+ GLKD +R V ++ G +
Sbjct: 233 VTEYVERFDSLMHQLLAYDNALTPRYFLTKFVDGLKDDIRGAVMLQRPEEILEGSRKPSY 292
Query: 53 FLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGS 112
+ ++ + V ++PA + ++ +R++ I L +LIDSGS
Sbjct: 293 RKSDGTNFNKVFSRPTQPTVWPKSPAQTTGDDRKLIESGKIRVKGLIQGTKLLMLIDSGS 352
Query: 113 THNFLHHKFAK-ITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLS 171
+H+FL + + G+ S P + V VA+GE L + LQG F LLS
Sbjct: 353 SHSFLDENIVQTMQGVTSLPQPV-KVKVASGEVLICDKQLPDYAWWLQGRCYRTNFKLLS 411
Query: 172 LEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGA 213
L G DA+LG WL LG + + + +++ +G V ++G
Sbjct: 412 LPGYDAILGIDWLQGLGVMRIIWVQKWLEYEINGSPVRIQGV 453
>gi|6466937|gb|AAF13073.1|AC011621_1 putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1661
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 14/181 (7%)
Query: 46 GHKCKK-----LFLIEAEEGDEPKEHEKEKDVTQET----PA-----ISLHALARVQSPQ 91
GHKCK L + E E + P E + +T+E PA ++L +L Q
Sbjct: 452 GHKCKPQKLKGLAITEEVEEESPLIEELNEPLTEEEGDPEPAEGFKVMTLSSLNDESQEQ 511
Query: 92 TMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRC 151
+M+++ I + +L+DSG+T NF+ + G V V G + S G+C
Sbjct: 512 SMKMRGYIGNTKVVLLVDSGATCNFISEALVREKGWLVTQTRSFGVKVGGGRIIKSSGKC 571
Query: 152 KGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLR 211
+ L++QG + +YL L D VLG WL LG ++ + + + V+L
Sbjct: 572 VDIPLEVQGIEFVQDYYLFDLGDLDLVLGFSWLAGLGETRANWRDLRISWQIGRTWVSLY 631
Query: 212 G 212
G
Sbjct: 632 G 632
>gi|449531517|ref|XP_004172732.1| PREDICTED: uncharacterized protein LOC101232451 [Cucumis sativus]
Length = 392
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 69/134 (51%)
Query: 79 ISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVV 138
+S++++ + + TM+++ I + +LID G+TH+F+ L V+
Sbjct: 40 LSINSVVGLSNSGTMKVKGKIQGTEVVVLIDCGATHSFIVDNLVTSLKLPLTETSNCGVI 99
Query: 139 VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKME 198
+ +G + G C V++ + +I F L LEG D +L QWL +LG +++ K+
Sbjct: 100 LGSGAAVKGKGICGQVEVMVGEWKIVDSFLPLELEGVDVILDMQWLHSLGVTEFNWRKLV 159
Query: 199 MQFTKDGHQVTLRG 212
M F +G +V +RG
Sbjct: 160 MTFQHEGKKVVIRG 173
>gi|225016150|gb|ACN78974.1| retrotransposon protein [Glycine max]
gi|225016158|gb|ACN78981.1| retrotransposon protein [Glycine max]
Length = 1261
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 42/199 (21%)
Query: 41 QKYTFGHKCKK---LFLIEAEE----GDEPKEHEKEKDVTQET-PA-ISLHALARVQSPQ 91
+KY+ GHKC LF+ E EE D +QET PA ISLHAL+ +P+
Sbjct: 386 EKYSRGHKCTPSLFLFVTEDEECLQDSDSNPSSPTALVASQETSPAQISLHALSGHGAPE 445
Query: 92 TMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRC 151
T L+ + L V V NGE+L C
Sbjct: 446 TF---------------------------------LQPQTTSTLRVTVGNGEELQCNQVC 472
Query: 152 KGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLR 211
V + +Q F++L + G D VLG QWL +LG +L D+ + M+F + + L+
Sbjct: 473 PEVAVHIQAHTFLVDFHILPICGADVVLGVQWLKSLGPVLTDYATLTMKFIYNDKLIELK 532
Query: 212 GATTSELKAIEGDTIQKTL 230
G + + I +++ +
Sbjct: 533 GDRDANIDQISPSQLRRLM 551
>gi|38344156|emb|CAD41876.2| OSJNBa0041A02.23 [Oryza sativa Japonica Group]
Length = 1373
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 100/239 (41%), Gaps = 44/239 (18%)
Query: 2 VSEYQTRFERLLARA----GHLTDKQEAECFISGLKDGLRTDVQKYTFGHKCKKLFLI-- 55
V Y +FE +A +L + CFI GL+ ++ D HKC+ +I
Sbjct: 381 VMHYIDKFEDSVALVKRDHPYLIEYYILSCFIGGLRADIKHD-------HKCRTGKVIHM 433
Query: 56 ------------------EAEEGDEP-KEHEKEKDVTQETPAISLHALARVQSPQTMRLQ 96
E E P +KE D ++ IS HA+ T L
Sbjct: 434 MEEVEDEEEESGSPEENQEGEYQTAPGSPAKKEDDNEEQLMQISTHAIQGTYGINTFSLI 493
Query: 97 SSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLL------SVVVANGEKLTSPGR 150
+ + + L+DSGST+ F++++FA L+S GC + V+VA G L S +
Sbjct: 494 TYVKGRKVVALVDSGSTNTFMNYEFA----LRS--GCEIIEFDHNRVMVAGGGILNSTAK 547
Query: 151 CKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVT 209
+ +Q ++QG F L+ L+G D VLGA W+ I D + + T G +
Sbjct: 548 TEVIQYKVQGYLFGKAFQLIPLKGYDIVLGADWIYEHSPINLDLKQRTLTVTYKGQNIN 606
>gi|222636869|gb|EEE67001.1| hypothetical protein OsJ_23913 [Oryza sativa Japonica Group]
Length = 877
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%)
Query: 135 LSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDF 194
L V+ANG++L SPG C+ + L + G + L L D +LG QWL TLG ILWDF
Sbjct: 665 LRFVMANGDRLVSPGLCRNLALNIDGEAFSVDCFALDLCAVDIILGMQWLQTLGPILWDF 724
Query: 195 DKMEMQFTKDGHQV 208
M M + ++
Sbjct: 725 KNMRMAIWRSTREI 738
>gi|78708062|gb|ABB47037.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1347
Score = 68.2 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 58/211 (27%), Positives = 82/211 (38%), Gaps = 50/211 (23%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQKYTFGHKCKKLFLIEAEEGD 61
V +Y RF LL R G+L++ Q+ E D
Sbjct: 203 VDDYAERFLDLLTRTGYLSEDQQLG--------------------------------EDD 230
Query: 62 EPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKF 121
+ ++ T ISLHA V++ M + + + L LIDSG H FL
Sbjct: 231 TDNDSATDQADAAATLRISLHAATGVRASDAMHITAHLGDTDLYTLIDSGLMHTFLSQDT 290
Query: 122 AKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGA 181
A G +P L+V VANG+K+ PG + LQ+ G + Y+L+L G D
Sbjct: 291 AARVGRAPQPRMGLNVTVANGDKVACPGVFPDMPLQIAGEEFATDVYVLTLGGYDL---- 346
Query: 182 QWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
DF + M F H+VTL G
Sbjct: 347 -----------DFTVLTMSFW---HRVTLHG 363
>gi|224114898|ref|XP_002332257.1| predicted protein [Populus trichocarpa]
gi|222832022|gb|EEE70499.1| predicted protein [Populus trichocarpa]
Length = 389
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 81/170 (47%), Gaps = 16/170 (9%)
Query: 22 KQEAECFISGLKDGLRTDVQKYTFGHKC--KKLFLIEAEEGDEPKEHEKEKDVTQETPAI 79
K+ +CF G KY GH+C K L +IE EG E +E + +D Q T I
Sbjct: 223 KKLGQCFKCG---------DKYMPGHRCNSKGLHMIEGVEGGEDEEIGEFEDNMQGTDQI 273
Query: 80 -----SLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCL 134
SL+ALA + T+R++ + +L ILIDSGSTH+F++ K + L
Sbjct: 274 DEYGLSLNALADNDTYNTIRIKGNCQGQNLIILIDSGSTHSFINESTIKALNATTSKTTL 333
Query: 135 LSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
L+V VANG + C + + ++ +L L D VLG WL
Sbjct: 334 LAVTVANGNVMLCEKHCPAFTWFMHNYEFKSNLRVLELGRHDLVLGVDWL 383
>gi|108862641|gb|ABG22014.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1422
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 1/157 (0%)
Query: 58 EEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFL 117
EE D+ + E EK +E +SL+AL P T + I+ LIDSGST F+
Sbjct: 384 EENDDMADTE-EKGKEEELMFVSLNALQGTSRPDTFLVIILINGRKAVGLIDSGSTSTFM 442
Query: 118 HHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDA 177
+FA + + + VVVA G +L S + +Q +QG Q F L+ L+G D
Sbjct: 443 DQEFAIKSQCPLKNSEVKKVVVARGGELRSEVQVPEIQYVIQGEQFSNPFNLIPLKGYDI 502
Query: 178 VLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGAT 214
+LGA W+ +I K ++ T G ++ L+ T
Sbjct: 503 ILGADWIFQYSAITLYLKKRILEITTGGKKLILQDFT 539
>gi|326497069|dbj|BAK02119.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 268
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%)
Query: 78 AISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSV 137
++S HAL+ ++P T+RL++ + + LIDSGSTH+F+ FA + +SV
Sbjct: 34 SLSPHALSGEEAPSTIRLRAQVGDQVMLFLIDSGSTHSFVSKAFATRLSVPMVTLPAVSV 93
Query: 138 VVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKM 197
+AN ++L + + Q+ G +L L D VLG WL + + +
Sbjct: 94 HMANSQRLRCDSMVQQLTWQVPGHTFHTDLRVLELGAYDGVLGMDWLSRHSPMNCHWLEK 153
Query: 198 EMQFTKDGHQVTLRGATTSELKAI 221
+ F +G V L+G +S+L I
Sbjct: 154 TISFQTEGKVVQLQGIRSSDLPPI 177
>gi|224108127|ref|XP_002333429.1| predicted protein [Populus trichocarpa]
gi|222836623|gb|EEE75016.1| predicted protein [Populus trichocarpa]
Length = 389
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 81/170 (47%), Gaps = 16/170 (9%)
Query: 22 KQEAECFISGLKDGLRTDVQKYTFGHKC--KKLFLIEAEEGDEPKEHEKEKDVTQETPAI 79
K+ +CF G KY GH+C K L +IE EG E +E + +D Q T I
Sbjct: 223 KKLGQCFKCG---------DKYMPGHRCNSKGLHMIEGVEGGEDEEIGEFEDNMQGTDQI 273
Query: 80 -----SLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCL 134
SL+ALA + T+R++ + +L ILIDSGSTH+F++ K + L
Sbjct: 274 DEYGLSLNALADNDTYNTIRIKGNCQGQNLIILIDSGSTHSFINESTIKALNATTSKTTL 333
Query: 135 LSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
L+V VANG + C + + ++ +L L D VLG WL
Sbjct: 334 LAVTVANGNVMLCETHCPAFTWFMHSYEFKSNLRVLELGRHDLVLGVDWL 383
>gi|116309548|emb|CAH66611.1| H0211A12.14 [Oryza sativa Indica Group]
Length = 486
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 57/171 (33%)
Query: 41 QKYTFGHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSP--QTMRLQSS 98
+K+T GH+CK+LF + A D+ + P ISL+A+A V+ P +TM+L +
Sbjct: 283 EKFTPGHRCKRLFWLYAPSADD--NETNPPNAEDGDPGISLYAMAGVRLPGSETMQLHIT 340
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I+ L L+DSGSTHNF++ A ++P LLS C G++
Sbjct: 341 INGKRLVALLDSGSTHNFINADVA------TDPSMLLS-------------PCHGLR--- 378
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVT 209
I+WDF K+++ T+ G Q+T
Sbjct: 379 -------------------------------IIWDFTKLQLTLTRAGCQIT 398
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQ 41
V++YQ +F LL+RAG L + Q+ E F +GL+ LR DV+
Sbjct: 140 VADYQEKFMSLLSRAGPLMEVQKIELFTAGLQGKLRIDVE 179
>gi|38346279|emb|CAE03982.2| OSJNBa0033H08.10 [Oryza sativa Japonica Group]
Length = 637
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 57/171 (33%)
Query: 41 QKYTFGHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSP--QTMRLQSS 98
+K+T GH+CK+LF + A D+ + P ISL+A+A V+ P +TM+L +
Sbjct: 434 EKFTPGHRCKRLFWLYAPSADD--NETNPPNAEDGDPGISLYAMAGVRLPGSETMQLHIT 491
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I+ L L+DSGSTHNF++ A ++P LLS C G++
Sbjct: 492 INGKRLVALLDSGSTHNFINADVA------TDPSMLLSP-------------CHGLR--- 529
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVT 209
I+WDF K+++ T+ G Q+T
Sbjct: 530 -------------------------------IIWDFTKLQLTLTRAGCQIT 549
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQ 41
V++YQ +F LL+RAG L + Q+ E F +GL+ LR DV+
Sbjct: 291 VADYQEKFMSLLSRAGPLMEVQKIELFTAGLQGKLRIDVE 330
>gi|218199463|gb|EEC81890.1| hypothetical protein OsI_25707 [Oryza sativa Indica Group]
Length = 839
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%)
Query: 135 LSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDF 194
L VVANG++L SPG C+ + L + + L L D +LG QWL TLG ILWDF
Sbjct: 627 LRFVVANGDRLVSPGLCRNLTLNIDDEAFSVDCFALDLCAVDIILGMQWLQTLGPILWDF 686
Query: 195 DKMEMQFTKDGHQV 208
M M + ++
Sbjct: 687 KNMRMAIWRSTRKI 700
>gi|147810501|emb|CAN60890.1| hypothetical protein VITISV_011880 [Vitis vinifera]
Length = 1378
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 7/132 (5%)
Query: 41 QKYTFGHKCKK--LFLIEAE---EGDEPKEHEKEKDVTQETPAI--SLHALARVQSPQTM 93
+K+T GHKCK+ L++++ + +G+ P+ + + + + +E I SL+AL + QTM
Sbjct: 378 EKFTPGHKCKRKQLYVMQIQVETDGEGPEGNLQMEGLGKEDEQIQLSLNALMSNEDSQTM 437
Query: 94 RLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKG 153
L + SL +LIDSGS+HNFL K AK + + V VANG++L C
Sbjct: 438 TLNGNYKGRSLFVLIDSGSSHNFLSSKVAKRVDCCWQKARGIRVTVANGQELHCTALCSD 497
Query: 154 VQLQLQGTQIEA 165
+ ++QG + A
Sbjct: 498 FRWRMQGQEFIA 509
>gi|255555239|ref|XP_002518656.1| conserved hypothetical protein [Ricinus communis]
gi|223542037|gb|EEF43581.1| conserved hypothetical protein [Ricinus communis]
Length = 177
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 56 EAEEGDEPKEH--EKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGST 113
E ++ P++H +E D E +S HAL +S T+ ++ + + L++SGST
Sbjct: 16 EHQDDTLPQDHIIPEEDD---EFINVSYHALGAHKSLNTVVVKGLVENQHVLNLLNSGST 72
Query: 114 HNFLHHKFA---KITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLL 170
H+FLH++ +++ P C V G KL S +C + ++ F LL
Sbjct: 73 HSFLHNRVVEKLNCNLVQATPFC---VSTGGGNKLISNQKCLNFEWKMNNLSFSFNFRLL 129
Query: 171 SLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203
+++ D VLGA W+ + + +DF K ++ F
Sbjct: 130 NIDEYDLVLGADWMRSFNHVYFDFCKNKLPFIN 162
>gi|62733754|gb|AAX95863.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1126
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 5/210 (2%)
Query: 4 EYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQKYTFGHKCKKLFLIEAEEGDEP 63
+++ RFE L A + + + ECF G K G K H ++L + + ++
Sbjct: 359 KWEDRFESLKA-----SRRAKGECFKCGEKWGPNHKCPKSVQLHVLEELLEVLQIQENQE 413
Query: 64 KEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAK 123
+ E + + E +S A++ +T+RLQ I + ILIDSGS+ +F+
Sbjct: 414 AGQDCESEGSDEELVVSECAVSGTMGKRTVRLQGLIQNQEVLILIDSGSSSSFVAQHLVD 473
Query: 124 ITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQW 183
L VV+A+G L V QG + +L L G D +LG W
Sbjct: 474 SLSLAVLETAPAQVVIADGGVLQCNKVATKVDWWCQGHSFTSDLKVLQLGGYDVILGMDW 533
Query: 184 LCTLGSILWDFDKMEMQFTKDGHQVTLRGA 213
L + ++ + +++FT G ++TL G
Sbjct: 534 LEHFSPMWINWQRKKLRFTYQGKRITLTGV 563
>gi|18568269|gb|AAL76001.1|AF466646_9 putative gag-pol polyprotein [Zea mays]
Length = 2396
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 86/201 (42%), Gaps = 16/201 (7%)
Query: 41 QKYTFGHKCK---KLFLIEAEEGDEPKEHEKEKDVTQETPA-------ISLHALARVQSP 90
+K+ GHKC +L +E E E D++ PA IS A
Sbjct: 393 EKWNPGHKCAATAQLHAMEEVWSLLVDEEVPESDLSPPEPAPEQLFVTISKSAWTGSTGR 452
Query: 91 QTMRLQSSISKASLTILIDSGSTHNFLHHKF-AKITGLKSEPGCLLSVVVANGEKLTSPG 149
QT++L SI L ILIDSGS+H FL+ + + G+ S L V VANG +T
Sbjct: 453 QTLKLNGSIQNHPLLILIDSGSSHTFLNDQLRPHLQGVTSM-ASTLQVQVANGAMVTCHY 511
Query: 150 RCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVT 209
+ Q Q+Q + L L D V+G WL + + D+ + + G V
Sbjct: 512 KLLQAQWQIQNCSFTSDVSFLPLPYYDMVVGMDWLESFSPMRVDWAQKWLIIPYQGSSVL 571
Query: 210 LRGATTSELKAIEGDTIQKTL 230
L+G T + DT+ + L
Sbjct: 572 LQGNTA----GVPADTVIELL 588
>gi|284434534|gb|ADB85289.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 397
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
Query: 65 EHEKEKDVTQETPAISLHALARVQS-PQTMRLQSSISKASLTILIDSGSTHNFLHHKFAK 123
EH+K++ V Q IS+HA+ S T L I +T L+DSGS+ F++ K
Sbjct: 159 EHQKKETVLQ----ISMHAVQGTSSVSNTFTLTLKIGGVKVTALVDSGSSATFVNPKLVT 214
Query: 124 ITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQW 183
+ + V++A+ + S C+G + ++QG + + +L L G + GA W
Sbjct: 215 KIPCEIVNHTAIRVMIADRRLMGSDTLCQGCKYEIQGEKFSSDMRVLPLRGYHVIFGADW 274
Query: 184 LCTLGSILWDFDKMEMQFTKDG-HQVTLRGATTSELKAI 221
+CT I + E TK G Q+T + T + +I
Sbjct: 275 ICTHNPIGLNLRAREFSITKHGVKQITFKDETQPDQNSI 313
>gi|32489310|emb|CAE03706.1| OSJNBa0060B20.14 [Oryza sativa Japonica Group]
Length = 3200
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Query: 78 AISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFA-KITGLKSEPGCLLS 136
AIS+ A+ +S ++RL+ + + +L+DSGSTH+F+ H+ K+TG+KS
Sbjct: 1821 AISIQAINGTESNHSIRLRGWLQGIEVLMLVDSGSTHSFVDHQLGLKLTGVKSM-ASPAR 1879
Query: 137 VVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDK 196
V VA+G L QG ++ F LLSL D +LG WL + D+ +
Sbjct: 1880 VKVADGGHLNCSLYVNNCDWLTQGIHFKSNFRLLSLGTYDVILGMDWLEQFSPMKVDWVQ 1939
Query: 197 MEMQFTKDGHQVTLRGATTSELKAI 221
++F G V L+ + KA+
Sbjct: 1940 KWLEFQFQGSTVRLQDSLLPGSKAV 1964
>gi|147837833|emb|CAN62821.1| hypothetical protein VITISV_013041 [Vitis vinifera]
Length = 1357
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 41 QKYTFGHKCKK--LFLIEAE---EGDEPKEHEKEKDVTQETPAI--SLHALARVQSPQTM 93
+K+T GHKCK+ L++++ + +G+ P+ + + + + +E I SL+AL + QTM
Sbjct: 286 EKFTPGHKCKRKQLYVMQIQVETDGEGPEGNLQMEGLGEEDEQIQLSLNALMSNEDSQTM 345
Query: 94 RLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKG 153
L + SL +LIDSGS+HNFL K AK + + V VANG +L C
Sbjct: 346 TLNGNYKGRSLFVLIDSGSSHNFLSSKVAKRVDCCWQKARGIRVTVANGHELHCTALCSD 405
Query: 154 VQLQLQGTQIEA 165
+ ++QG + A
Sbjct: 406 FRWRMQGQEFIA 417
>gi|110289660|gb|AAP55181.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1459
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 67 EKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHH----KFA 122
E+E D + +IS A+ +S +++RL + L +LIDSGSTH+F+ K
Sbjct: 589 EQEIDEVGDLMSISQQAVWGTESSRSIRLIGWVQGTELLMLIDSGSTHSFMDETVGSKMV 648
Query: 123 KITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQ 182
++ L+ LSV +A+G L + +QG + F LL+L G D +LG
Sbjct: 649 GVSPLRKP----LSVQLADGGSLLCSHEIANCKWWMQGHSFSSNFRLLNLGGYDIILGMD 704
Query: 183 WLCTLGSILWDFDKMEMQFTKDGHQVTLRGAT--TSELKAIEGDTIQKTLRK 232
WL + D+ + M+ + V L+G T T+ AI + RK
Sbjct: 705 WLEQFSPMQVDWSQKWMEIQVNNQPVRLQGITSQTNSCNAISAEQCLGMARK 756
>gi|147867132|emb|CAN82647.1| hypothetical protein VITISV_005196 [Vitis vinifera]
Length = 456
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 78/163 (47%), Gaps = 23/163 (14%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQKYTF--GHK----CKKLF-- 53
+ +YQ FE+L R T + F+ GLK + +Q + GH C+ +
Sbjct: 102 LRDYQREFEKLSNRVRGWTQRALVGTFMGGLKAEISDGIQMFLLLEGHVGTMVCEDIIDQ 161
Query: 54 --LIEAEEGD--EPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILID 109
L E + GD E +E E E + I LHAL R P+TM + + + + +L+D
Sbjct: 162 PTLEEDQGGDIGEVQEPELESE-------IKLHALTRWTGPRTMCIIARMGPHEVVVLVD 214
Query: 110 SGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCK 152
SGSTHNF+ + + L SV+VANGEKL RC+
Sbjct: 215 SGSTHNFISDRLENMPRLPIIHMEAFSVLVANGEKL----RCQ 253
>gi|108864085|gb|ABA91843.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1411
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 13/178 (7%)
Query: 62 EPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKF 121
E EH E+ +E +S +A+ P T + I+ L+DSGS F+ ++
Sbjct: 306 EETEHAPEEIDQEELMYVSQNAMQGATRPDTFSVIIQINGRRAVGLVDSGSPSTFMDQEY 365
Query: 122 AKITGLKSEPGCLL------SVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGC 175
A ++++ C L VVVA G +L S + + Q+QG F L+ L+G
Sbjct: 366 A----IRND--CPLVSTDSKKVVVAGGGELKSEVQVPDILYQIQGETFSNKFNLIPLKGY 419
Query: 176 DAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGAT-TSELKAIEGDTIQKTLRK 232
D +LGA W+ I D K E+ TK +TL+ T T + ++ + K +RK
Sbjct: 420 DIILGADWIYKYSPITLDLKKRELGITKGEKVITLQDFTNTGKHLLVDSSKVDKIIRK 477
>gi|108862706|gb|ABA98602.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2202
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 15/190 (7%)
Query: 41 QKYTFGHKC---------KKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQ 91
+K++ HKC +++F + + + + E ++S+HA+ + Q
Sbjct: 688 EKWSLSHKCSSSVQLNAVQEVFALLQQNDSDSGDSSGEDTEPHSLFSLSVHAIQGTTTAQ 747
Query: 92 TMR----LQSSISKASLTILIDSGSTHNFLH-HKFAKITGLKSEPGCLLSVVVANGEKLT 146
TMR LQ I + IL+DSGS+ +F+ +++ L P V VANG+ L+
Sbjct: 748 TMRQTMRLQGIIQGYDILILVDSGSSCSFISLSVMPQLSNLIQLP-VSFQVKVANGQMLS 806
Query: 147 SPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGH 206
V +QG + +L L+ D +LG WL + D+ + ++FT DG
Sbjct: 807 CETELANVSWSVQGHHFCSALKVLPLQSYDMILGMDWLERYSPMDIDWQQKTIRFTLDGQ 866
Query: 207 QVTLRGATTS 216
+TL G S
Sbjct: 867 LITLCGVVPS 876
>gi|147855151|emb|CAN81740.1| hypothetical protein VITISV_009674 [Vitis vinifera]
Length = 771
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 52/106 (49%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+TM++ + I + ILIDS STHN + + + L P V V+NGE L
Sbjct: 95 TPKTMQVATKIGAQDVIILIDSESTHNLISERLTNLLRLLVVPMKTFIVRVSNGEHLRCQ 154
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDF 194
G+ + VQ+ LQGT Y L L G D VLG L W F
Sbjct: 155 GQFEEVQVDLQGTSFSLTLYSLPLIGLDVVLGFNGSSYLALWNWRF 200
>gi|10140673|gb|AAG13508.1|AC068924_13 putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1608
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 96/223 (43%), Gaps = 31/223 (13%)
Query: 27 CFISGLKDGLRTDVQKYTFGHKCKKLF-------LIEAEEGDEPKEH-------EKEKDV 72
CF+ G +K+ HKC LI A + D P+E+ E E+D
Sbjct: 372 CFVCG---------EKWGRDHKCATTVQLHVVEELINALKTD-PEENCNSEGAPESEEDS 421
Query: 73 TQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKF-AKITGLKSEP 131
AIS AL S +++RL+ + L +L+DSGSTH+F+ K A++ GL+ +
Sbjct: 422 LM---AISFQALNGTDSSKSIRLRGWVQNTELLMLVDSGSTHSFIDAKLGAQLCGLQ-KL 477
Query: 132 GCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ V VA+G +L QG + F LL L DA+LG WL +
Sbjct: 478 NQAIKVQVADGSQLFCDSFLPNCSWWSQGHSFTSDFRLLPLGSYDAILGMDWLEQFSPMQ 537
Query: 192 WDFDKMEMQFTKDGHQVTLRG--ATTSELKAIEGDTIQKTLRK 232
D+ + F G V L+G S I D +Q +K
Sbjct: 538 VDWVHKWIAFQHHGQAVQLQGIHPQLSTCFPISNDQLQGMSKK 580
>gi|147807720|emb|CAN66553.1| hypothetical protein VITISV_018166 [Vitis vinifera]
Length = 1448
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%)
Query: 93 MRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCK 152
M+++ I + IL+DSG+THNFL + + L V++ G + G C+
Sbjct: 1 MKIKGMIGSKEVIILVDSGATHNFLSLELVQQLALPLTTTTSYEVMMGTGISVKGKGICR 60
Query: 153 GVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
GV + +QG + F L L D +LG WL TLG + ++ + M+ + L+G
Sbjct: 61 GVCISMQGLTVVEDFLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVIVLKG 120
>gi|449456255|ref|XP_004145865.1| PREDICTED: enzymatic polyprotein-like [Cucumis sativus]
Length = 818
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 26/179 (14%)
Query: 41 QKYTFGHKCKK------LFLIEAEEGDEPKEHEKEKDVTQETPAISLHALA-RVQSPQTM 93
+KY GH+CK + LI EE D +E + E + ++ I L+ L + +P +
Sbjct: 325 EKYAPGHRCKGREKRELMLLILNEEEDHKREEDTEDEASE---VIELNHLELNMDNPIEL 381
Query: 94 RLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKG 153
RL + ++ S T H L +PG V + N + G CK
Sbjct: 382 RLITGVT---------SKGTMKLKGH-------LSIDPGTRFGVTIGNDNQCEGSGICKR 425
Query: 154 VQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
V+++L+ I A F + L D VLG QWL T G++ + + M F Q+ LRG
Sbjct: 426 VKVKLKELTIVADFLAVELGTVDLVLGMQWLDTTGTMKVHWPSLTMTFWAKDKQIVLRG 484
>gi|77551042|gb|ABA93839.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 852
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 11/159 (6%)
Query: 78 AISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFA-KITGLKS--EPGCL 134
A+S+HA+ + S T RL I + IL+DSGS+ +FL FA ++ G++ P
Sbjct: 316 ALSIHAIQGIVSSSTKRLHGKIQGRDVLILVDSGSSTSFLSVAFADQLEGVQPLRRP--- 372
Query: 135 LSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDF 194
LSV VANGE L QG F ++++ G DA+LG WL + D+
Sbjct: 373 LSVKVANGEMLRCLTELPNTVWSAQGFGFCTTFKVITMGGYDAILGMDWLTQHSPMDIDW 432
Query: 195 DKMEMQFTKDGHQ-----VTLRGATTSELKAIEGDTIQK 228
++ T HQ + LR + E++ D +QK
Sbjct: 433 QAKTIRLTLGTHQEQLVALKLRNSVEDEIERQVKDKLQK 471
>gi|323134589|gb|ADX31265.1| unknown [Triticum aestivum]
Length = 1231
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 14/186 (7%)
Query: 41 QKYTFGHKCKK----------LFLIEAEEG-DEPKEHEKEKDVTQETPAISLHALARVQS 89
+++ GH+C L L++A++G + + ++DV IS A +
Sbjct: 399 ERWGQGHQCGPTVQLHVVEELLELLQADQGVPVVPDPDSDEDVLM---CISKGATTGQTT 455
Query: 90 PQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPG 149
P+T+RL I + IL+DSGS+H+FL L + ++V +A+G L+ G
Sbjct: 456 PRTVRLLGQIGGQEMLILVDSGSSHSFLSDTVVARLQLPIQAMSTVAVKIADGGTLSCSG 515
Query: 150 RCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVT 209
+ + QG + +L+L D ++G WL + G + D+ ++ F G Q+
Sbjct: 516 VVPECRWKTQGHEFVTDLRVLALGCYDMIVGMDWLESCGPMWIDWSAKQLIFNHGGQQIQ 575
Query: 210 LRGATT 215
L G T
Sbjct: 576 LAGVQT 581
>gi|357130317|ref|XP_003566796.1| PREDICTED: retrotransposon-derived protein PEG10-like [Brachypodium
distachyon]
Length = 717
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 11/164 (6%)
Query: 41 QKYTFGHKC--------KKLFLIEAEEGDEPKEHEKEKDVTQETPA-ISLHALARVQSPQ 91
+K+ GH+C K + ++E + + +D+ ET +SL+A++ P
Sbjct: 344 EKFIPGHQCAIVPAPQIKAVQVVELLSDEVLDAIAQGEDMDDETDMHLSLNAVSGADHPD 403
Query: 92 TMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRC 151
T+RL+ + L +LIDSGS+H+F+ P L +V VANG L +
Sbjct: 404 TIRLRCLVGNKVLIMLIDSGSSHSFIDSHLLTSLNYSVVPIPLTAVKVANGAVLQCDSKV 463
Query: 152 KGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL--WD 193
G+ +Q + F ++ L DA+LG WL G++ WD
Sbjct: 464 SGLTWWVQHHTFQYDFRVVQLGEYDAILGMDWLKQWGAMACHWD 507
>gi|15230067|ref|NP_189618.1| aspartyl protease-like protein [Arabidopsis thaliana]
gi|332644083|gb|AEE77604.1| aspartyl protease-like protein [Arabidopsis thaliana]
Length = 421
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 104/229 (45%), Gaps = 23/229 (10%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQK----------------YTF 45
V +Y+ RFE L R+ L + E F+ GL+ L+T V++ +
Sbjct: 18 VRDYRERFEALCLRSVTLPGQGFEEMFLQGLQPSLQTAVRELKPNGINSYQSRQAELMSL 77
Query: 46 GHKCKKLFLIEAEEG--DEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKAS 103
KL +++ ++G +E +E E++ ++ + L R + MR I
Sbjct: 78 TLVQAKLDVVKKKKGVINELEELEQDSYTLRQGMEQLVIDLTR---NKGMRFYGFILDHK 134
Query: 104 LTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQI 163
+ + IDSG+T NF+ + A L + SV++ + + S G C G++L +Q +I
Sbjct: 135 VVVAIDSGATDNFILVELAFSLKLPTSITNQASVLLGQRQCIQSVGTCLGIRLWVQEVEI 194
Query: 164 EAYFYLLSLE--GCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
F LL L D +LG +WL LG + ++ + F+ + +TL
Sbjct: 195 TENFLLLDLAKTDVDVILGYEWLSKLGETMVNWQNQDFSFSHNQQWITL 243
>gi|307136196|gb|ADN34034.1| gypsy/ty3 element polyprotein [Cucumis melo subsp. melo]
Length = 473
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%)
Query: 66 HEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKIT 125
HE E +SL+ + + +P T +++ + + I++D G+THNF+ K +
Sbjct: 332 HEGEMVEVSPMVELSLNFVVGLTAPGTFKIKGRVEDREIVIMVDCGATHNFISLKLVESL 391
Query: 126 GLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
L V++ + + + CKG+ + L I F L L D VLG QWL
Sbjct: 392 NLPMAAITNYGVIMGSEKAVQGREMCKGITVGLPVITIVEDFLPLELGNLDMVLGMQWLQ 451
Query: 186 TLGSILWDFDKMEMQFT 202
G++ D+ + M F
Sbjct: 452 KQGAMTVDWKALTMNFV 468
>gi|357143961|ref|XP_003573116.1| PREDICTED: uncharacterized protein LOC100827899 [Brachypodium
distachyon]
Length = 1665
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 22/199 (11%)
Query: 26 ECFISGLKDGLRTDVQKYTFGHKCK---KLFLIE--------AEEGDEPKEHEKEKDVTQ 74
ECF G KY GHKC L ++E + E D E E E +
Sbjct: 552 ECFKCG---------DKYQPGHKCAASVPLHMVEELLEVLQVSTESD--TEQENEDSDSD 600
Query: 75 ETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCL 134
+S+ A + + ++MRLQ + + ILIDSGS +F+ L+ +P
Sbjct: 601 SLMHLSICATSGTSNKKSMRLQGVMEGKQVLILIDSGSNGSFISQAAVAAIKLQVQPVPA 660
Query: 135 LSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDF 194
+ V VANG K++ QG + + +L D +LG WL G + D+
Sbjct: 661 VVVTVANGGKVSCDSAVPNATWTCQGHTFNSTLRVFNLPHYDMILGMDWLEACGKMWIDW 720
Query: 195 DKMEMQFTKDGHQVTLRGA 213
K ++F +G ++TLRG
Sbjct: 721 PKKVLRFWHNGVRITLRGV 739
>gi|218186024|gb|EEC68451.1| hypothetical protein OsI_36669 [Oryza sativa Indica Group]
Length = 554
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 100/220 (45%), Gaps = 28/220 (12%)
Query: 4 EYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQKYTFGHKCKKLF-------LIE 56
+++ R++ L A + ECF G +K+ GHKC+K L+E
Sbjct: 338 KWEERYDSLNA-----ARRARGECFKCG---------EKFGPGHKCQKAVQLHVLDELLE 383
Query: 57 AEE-GDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHN 115
+ DEP + E+ + E +S +AL + +T+RLQ I + ILIDSGS+ +
Sbjct: 384 VFQFSDEPGQVEESS--SDEELLLSENALFGTEGKRTIRLQGLIGNQQVLILIDSGSSSS 441
Query: 116 FLHHKFAKITGL--KSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLE 173
F+ L S P L V++ +G KL + V+ QG + F +L L
Sbjct: 442 FMASHLVDRLHLVPNSIPSAL--VMIVDGGKLFCDEMAEQVEWWCQGNTFSSNFKILGLG 499
Query: 174 GCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGA 213
G D +LG WL + + + ++FT G +TL+G
Sbjct: 500 GYDLILGMDWLEAHSPMWIHWGRKTVRFTHSGKDITLQGV 539
>gi|224133300|ref|XP_002321533.1| predicted protein [Populus trichocarpa]
gi|222868529|gb|EEF05660.1| predicted protein [Populus trichocarpa]
Length = 224
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Query: 63 PKEHEKEKDVTQETPAIS-LHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKF 121
P EK++ V + S H + + + MR+++ + ++ LID GSTH F+ K
Sbjct: 95 PVLKEKKRRVGFVSSVTSGFHVMIGNPNLRIMRVRAKVGNLTIIPLIDIGSTHYFVPSKM 154
Query: 122 AKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGA 181
K G++ + V V + ++ S G + ++Q + +L L G D VLG
Sbjct: 155 TKRMGIEISAQRFMRVKVVDDTEINSEGEYADFKFKIQRNHFVSQAIVLPLGGYDVVLGI 214
Query: 182 QWLCTLGSIL 191
QWL LGSIL
Sbjct: 215 QWLQELGSIL 224
>gi|108864659|gb|ABA95357.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2811
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 89/187 (47%), Gaps = 20/187 (10%)
Query: 41 QKYTFGHKC---------KKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQ 91
+K++ HKC ++LF + A + E E++ D T AISL A+ S
Sbjct: 1752 EKWSPTHKCSGSVQLHAVQELFSVLAADV---SEGEQDADSTSSLMAISLQAIQGTVSAH 1808
Query: 92 TMRLQSSISKASLTILIDSGSTHNFLHH-KFAKITGLKSEPGCLLSVV---VANGEKLTS 147
T+RLQ SI + IL+DSGS+ +FL +TG+KS LL+ V VANG L+
Sbjct: 1809 TLRLQGSIQGFDVLILVDSGSSCSFLSSVVLPHLTGVKS----LLTPVQVKVANGAVLSC 1864
Query: 148 PGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQ 207
+ ++QG Q F LL L+ D +LG WL + ++ +QF
Sbjct: 1865 TSELPAAKWEVQGHQFSTDFKLLPLDNYDMILGMDWLEKYSPMDINWQAKTIQFGLHDKS 1924
Query: 208 VTLRGAT 214
V L+G
Sbjct: 1925 VELKGVV 1931
>gi|356551468|ref|XP_003544097.1| PREDICTED: uncharacterized protein LOC100808479 [Glycine max]
Length = 600
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%)
Query: 138 VVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKM 197
+V NG +L C V + +QG F+++SL G D VLG QWL +LG IL ++ +
Sbjct: 1 MVRNGNELDCLHLCNNVSIHVQGHVFIVDFHVMSLTGADLVLGVQWLKSLGLILKNYSDL 60
Query: 198 EMQFTKDGHQVTLRGATTSELKAIEGDTIQKTLRKN 233
MQF G + L+G +L + +Q+ N
Sbjct: 61 TMQFFHTGRVIQLQGNRDGDLDSFNTKQLQQMATMN 96
>gi|77553274|gb|ABA96070.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 373
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 50 KKLFLIEAEEGDEPKEHEKEKDVTQETPA-ISLHALARVQSPQTMRLQSSISKASLTILI 108
K LFL+ D+ + + + T T +SLHA+A V+ TM++ ++ +L L+
Sbjct: 250 KHLFLLNLATPDDNNDDDSTPEETGGTNTHVSLHAIAGVRFNDTMQVHINMGGTNLLALL 309
Query: 109 DSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPG 149
DSG THNF+ A +T LK P + V+VANGE ++ PG
Sbjct: 310 DSGFTHNFVSTAAASLTKLKLLPNGKMQVMVANGEYVSCPG 350
>gi|110289541|gb|AAP54937.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1477
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 91/206 (44%), Gaps = 28/206 (13%)
Query: 27 CFISGLKDGLRTDVQKYTFGHKCKKLF-------LIEAEEGDEPKEHEKEKDVTQE---T 76
CF G +++ HKC L+E +GD ++ E +E
Sbjct: 357 CFTCG---------ERWGRDHKCATAVQLHVVQELLEVLQGDSGEDSPTESSPEREDIIV 407
Query: 77 PAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAK-ITGLK--SEPGC 133
AIS AL +S ++RL+ I L +LIDSGS+H+F+ K K ++G+K ++P
Sbjct: 408 MAISQQALNGTESRNSIRLRGWIQGTELLMLIDSGSSHSFIDEKIGKSMSGVKLLTKP-- 465
Query: 134 LLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL--CTLGSIL 191
L V +A+G +L QG F L+ L G D +LG WL + I
Sbjct: 466 -LKVQIADGGELVCSQVIPNCSWWTQGHNFSNDFKLIPLGGYDIILGMDWLEQYSPMKIY 524
Query: 192 WDFDKMEMQFTKDGHQVT-LRGATTS 216
W +E Q+ +V + +TTS
Sbjct: 525 WVNKWVEFQYQNQWLRVLGISSSTTS 550
>gi|18378609|gb|AAL68642.1|AF458766_1 polyprotein [Oryza sativa Japonica Group]
Length = 677
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAK-ITGLKSEPGCLLSVVVANGEKLTS 147
S + R++ I L +LIDSGS+H+FL + + G+ S P + V VA+GE L
Sbjct: 29 STHSFRVKGLIQGTKLLMLIDSGSSHSFLDENIVQTMQGVTSLPQPV-KVKVASGEVLIC 87
Query: 148 PGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQ 207
+ LQG F LLSL G DA+LG WL LG + + + +++ +G
Sbjct: 88 DKQLPDYAWWLQGRCYRTNFKLLSLPGYDAILGIDWLQGLGVMRIIWVQKWLEYEINGSP 147
Query: 208 VTLRGA 213
V ++G
Sbjct: 148 VRIQGV 153
>gi|116310275|emb|CAH67280.1| OSIGBa0111L12.7 [Oryza sativa Indica Group]
Length = 940
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 21/229 (9%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQKYTFGHKCKKLF-------L 54
++ + ++RL A + K CF+ G +K+ HKC L
Sbjct: 215 LNNHSREYDRLSALKSYRRSK--GLCFVCG---------EKWGRDHKCASSIQLHVVQEL 263
Query: 55 IEAEEGDEPKEHEKEKDVTQET-PAISLHALARVQSPQTMRLQSSISKASLTILIDSGST 113
++ +G E + +T AIS A+ S ++RL+ + + +LIDSGST
Sbjct: 264 LDVLQGSSQSEQAVSEPPESDTLMAISQQAINVTDSNHSIRLRGWVQGIEILMLIDSGST 323
Query: 114 HNFLHHKFA-KITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSL 172
H+F++ + K++G+K+ P V VA+G LT QG ++ F LL L
Sbjct: 324 HSFVYQQIGLKLSGVKAMP-VPARVKVADGGFLTCSLHIIECDWLTQGIHFKSNFRLLPL 382
Query: 173 EGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKAI 221
+ +L WL + D+ ++F + V L+G +S L +
Sbjct: 383 GAYNVILEMDWLERFSPMRVDWVHKWLEFQLNDSMVRLQGTLSSTLSCL 431
>gi|90399077|emb|CAJ86299.1| H0124B04.16 [Oryza sativa Indica Group]
Length = 1265
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 9/171 (5%)
Query: 47 HKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTI 106
H ++LF + A + + E++ D T AISL A+ S T+RLQ SI + I
Sbjct: 402 HAVQELFSVLAAD---VSDGEQDADSTSSLMAISLQAIQGTVSAHTLRLQGSIQGFDVLI 458
Query: 107 LIDSGSTHNFLHH-KFAKITGLKS--EPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQI 163
L+DSGS+ +FL +TG+KS P + V VANG L + ++QG Q
Sbjct: 459 LVDSGSSCSFLSSVVLPHLTGVKSLLTP---IQVKVANGTVLYCTSELPAAKWEVQGHQF 515
Query: 164 EAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGAT 214
F LL L+ D +LG WL + ++ +QF V L+G
Sbjct: 516 STNFKLLPLDNYDMILGMDWLEKYSPMDINWQAKTIQFCLHDKSVELKGVV 566
>gi|38345562|emb|CAE03436.2| OSJNBa0032F06.19 [Oryza sativa Japonica Group]
Length = 1575
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 18/186 (9%)
Query: 41 QKYTFGHKC---------KKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQ 91
+K++ HKC ++LF + A + + E++ D T AISL A+ S
Sbjct: 438 EKWSPTHKCSGPVQLHAVQELFSVLAADVSD---GEQDADSTSSLMAISLQAIQGTVSAH 494
Query: 92 TMRLQSSISKASLTILIDSGSTHNFLHH-KFAKITGLKS--EPGCLLSVVVANGEKLTSP 148
T+RLQ SI + IL+DSGS+ +FL +TG+KS P + V VANG L
Sbjct: 495 TLRLQGSIQGFDVLILVDSGSSCSFLSSVVLPHLTGVKSLLTP---IQVKVANGTVLYCT 551
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ ++QG Q F LL L+ D +LG WL + ++ +QF V
Sbjct: 552 SELPAAKWEVQGHQFSTNFKLLPLDNYDMILGMDWLEKYSPMDINWQAKTIQFCLHDKSV 611
Query: 209 TLRGAT 214
L+G
Sbjct: 612 ELKGVV 617
>gi|116308903|emb|CAH66035.1| H0515C11.11 [Oryza sativa Indica Group]
Length = 499
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 35/172 (20%)
Query: 41 QKYTFGHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSIS 100
+K+ HKC +LF IE +E + D + P +SL+AL+ V TMRL +
Sbjct: 334 EKFVRDHKCARLFHIEYDETASDDDAAPAGDADTDEPRVSLNALSGVDGANTMRLPCARI 393
Query: 101 KASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQG 160
AS + +V + + + L + G
Sbjct: 394 SASW-----------------------------WPTAIVWRAQAFAA------ICLTIDG 418
Query: 161 TQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
+ ++L + D +LG +WL +LG ILW+F M M + +VTL G
Sbjct: 419 ERFHVDCFVLEVYAIDIILGTEWLRSLGPILWNFRNMRMAIWRGTREVTLYG 470
>gi|116309424|emb|CAH66499.1| H0321H01.8 [Oryza sativa Indica Group]
Length = 1602
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 2/156 (1%)
Query: 58 EEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFL 117
E +PK + E +IS A+ +S +T++L+ I L +L+DSGSTH+F+
Sbjct: 387 ESESDPKSEDTEDSQHGTLLSISQQAVWGTESSRTIKLRGWIQDMELLMLVDSGSTHSFI 446
Query: 118 HHKFA-KITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCD 176
+ + ++ G+ L+V +A+G + +QG Q F +L L D
Sbjct: 447 DSEVSLRLPGVHKL-QTPLTVRIADGGTMKCTHEISSCNWWMQGNQFCNSFRVLPLGNYD 505
Query: 177 AVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
+LG WL + D+ M+F G V L+G
Sbjct: 506 IILGMDWLELFSPMQVDWANKWMEFLYQGKLVRLQG 541
>gi|147770556|emb|CAN71306.1| hypothetical protein VITISV_018194 [Vitis vinifera]
Length = 279
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 31/36 (86%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLR 37
+ +YQT+FERLLA A LT++QEAECFISGL DGLR
Sbjct: 42 IFDYQTQFERLLAWADTLTNRQEAECFISGLNDGLR 77
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 124 ITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAY 166
I+GL G + +VVAN E+L+SPGRC GV+L LQG IE +
Sbjct: 69 ISGLND--GLRMILVVANEERLSSPGRCNGVKLSLQGIPIEVW 109
>gi|284434698|gb|ADB85398.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1348
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 78/197 (39%), Gaps = 22/197 (11%)
Query: 28 FISGLKDGLRTDVQKYTFGHKCKK-----LFLIEAEEGDEPK-EHEKEKDVTQE------ 75
FI G+ R K+ GH+CK+ L + E EE P E E + T E
Sbjct: 157 FIPGI---CRYCGDKWFLGHRCKQYQQVNLMVSETEETAHPNVETEDDPPDTNECTVEET 213
Query: 76 -TPAISLHALARVQSPQ------TMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLK 128
P +H Q+ Q T ++ I L+DSGSTH F+ +FA T +
Sbjct: 214 DPPEQLMHMQVSSQAVQGYSRFTTYTVEVKIGGRRGIALLDSGSTHTFMDLRFATKTTCR 273
Query: 129 SEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLG 188
L+ V VA G + + V+ + G F +L L+ D VLG W+
Sbjct: 274 IMCNNLMKVTVAGGGSILTGSHVPEVKYSINGQVFCNSFKILKLKNYDMVLGCDWMYQHS 333
Query: 189 SILWDFDKMEMQFTKDG 205
I D + KDG
Sbjct: 334 PINIDLKTRRLTIMKDG 350
>gi|18958673|gb|AAL82656.1|AC092387_4 retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|20270059|gb|AAM18147.1|AC092172_7 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1338
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/167 (26%), Positives = 65/167 (38%), Gaps = 32/167 (19%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQKYTFGHKCKKLFLIEAEEGD 61
V +Y RF LL R G+L++ Q+ E D
Sbjct: 203 VDDYAERFLDLLTRTGYLSEDQQLG--------------------------------EDD 230
Query: 62 EPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKF 121
+ ++ T ISLHA V++ M + + + L LIDSG H FL
Sbjct: 231 TDNDSATDQADAAATLRISLHAATGVRASDAMHITAHLGDTDLYTLIDSGLMHTFLSQDT 290
Query: 122 AKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFY 168
A G +P L+V VANG+K+ PG + LQ+ G + Y
Sbjct: 291 AARVGRAPQPRMGLNVTVANGDKVACPGVFPDMPLQIAGEEFATDVY 337
>gi|53981172|gb|AAV24812.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1475
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 3/162 (1%)
Query: 73 TQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPG 132
T+E IS A+ P T + I+ + L+DSGST F+ +A +
Sbjct: 350 TEELMYISQTAVQGTSRPDTFSVLIKINGRTAVGLVDSGSTTTFMDQDYALRNYYPLKNT 409
Query: 133 CLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILW 192
VVVA G +L + + ++QG F LL L+G D +LGA W+ I
Sbjct: 410 DTKKVVVAGGGELKTDVMVPDISYEIQGECFTNQFKLLPLKGYDIILGADWIYNYSPISL 469
Query: 193 DFDKMEMQFTKDGHQVTLRGATTSELK--AIEGDTIQKTLRK 232
D + + TK G++V L T K I G ++K L+K
Sbjct: 470 DLKQRILGITK-GNKVILLQDFTKPNKHFQISGKRLEKMLKK 510
>gi|297604112|ref|NP_001055003.2| Os05g0241900 [Oryza sativa Japonica Group]
gi|255676164|dbj|BAF16917.2| Os05g0241900 [Oryza sativa Japonica Group]
Length = 578
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 3/162 (1%)
Query: 73 TQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPG 132
T+E IS A+ P T + I+ + L+DSGST F+ +A +
Sbjct: 350 TEELMYISQTAVQGTSRPDTFSVLIKINGRTAVGLVDSGSTTTFMDQDYALRNYYPLKNT 409
Query: 133 CLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILW 192
VVVA G +L + + ++QG F LL L+G D +LGA W+ I
Sbjct: 410 DTKKVVVAGGGELKTDVMVPDISYEIQGECFTNQFKLLPLKGYDIILGADWIYNYSPISL 469
Query: 193 DFDKMEMQFTKDGHQVTLRGATTSELK--AIEGDTIQKTLRK 232
D + + TK G++V L T K I G ++K L+K
Sbjct: 470 DLKQRILGITK-GNKVILLQDFTKPNKHFQISGKRLEKMLKK 510
>gi|38344579|emb|CAE05537.2| OSJNBa0053B21.11 [Oryza sativa Japonica Group]
Length = 1251
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%)
Query: 107 LIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAY 166
L+DSGST++F+++ FA +G + ++VA G ++S + + + +QG E
Sbjct: 331 LVDSGSTNSFMNYDFAIKSGCEILEAGNRRILVAGGGMISSSTKTEQLSYTVQGHPFERV 390
Query: 167 FYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
F L+ L+G D +LGA W+ I D + + T G QV
Sbjct: 391 FQLIPLKGFDVILGADWIYDHSPISLDLKQRVLWVTCKGQQV 432
>gi|32492359|emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa Japonica Group]
Length = 1586
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 66/153 (43%)
Query: 62 EPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKF 121
E +E + + +E +S +A+ P T + I+ L+DSGST F+ +
Sbjct: 456 EKEEAPPDDENQEELMFVSHNAVYGTTRPDTFSVIIQINGRRAVGLVDSGSTSTFMDQDY 515
Query: 122 AKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGA 181
A VVVA G +L S + + Q+QG F ++ L+G D +LGA
Sbjct: 516 AVRNHCPLVSTDAKKVVVAGGGELKSEVQVPELVYQIQGETFSNKFNIIPLKGYDVILGA 575
Query: 182 QWLCTLGSILWDFDKMEMQFTKDGHQVTLRGAT 214
W+ I D K E+ TK V ++ T
Sbjct: 576 DWIYKYSPITLDLKKRELGITKGEKTVVIQDFT 608
>gi|91805527|gb|ABE65492.1| hypothetical protein At3g29750 [Arabidopsis thaliana]
Length = 259
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 93 MRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCK 152
MR I + + IDSG+T NF+ + A L + SV++ + + S G C
Sbjct: 50 MRFYGFILDHKVVVAIDSGATDNFILVELAFSLKLPTSITNQASVLLGQRQCIQSVGTCL 109
Query: 153 GVQLQLQGTQIEAYFYLLSLE--GCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
G++L +Q +I F LL L D +LG +WL LG + ++ + F+ + +TL
Sbjct: 110 GIRLWVQEVEITENFLLLDLAKTDVDVILGYEWLSKLGETMVNWQNQDFSFSHNQQWITL 169
>gi|116830535|gb|ABK28225.1| unknown [Arabidopsis thaliana]
Length = 260
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 93 MRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCK 152
MR I + + IDSG+T NF+ + A L + SV++ + + S G C
Sbjct: 50 MRFYGFILDHKVVVAIDSGATDNFILVELAFSLKLPTSITNQASVLLGQRQCIQSVGTCL 109
Query: 153 GVQLQLQGTQIEAYFYLLSLE--GCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
G++L +Q +I F LL L D +LG +WL LG + ++ + F+ + +TL
Sbjct: 110 GIRLWVQEVEITENFLLLDLAKTDVDVILGYEWLSKLGETMVNWQNQDFSFSHNQQWITL 169
>gi|255576772|ref|XP_002529273.1| conserved hypothetical protein [Ricinus communis]
gi|223531262|gb|EEF33105.1| conserved hypothetical protein [Ricinus communis]
Length = 278
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 79 ISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITG---LKSEPGCLL 135
+S+HA + S T++++SSI ++ IL+DS STH+FL K AK G +K+ P L
Sbjct: 174 LSMHATSGSASSNTLKIKSSIGGKTIMILVDSRSTHSFLDVKVAKDVGSHIVKAPP---L 230
Query: 136 SVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEG 174
++ VAN + S GRC+ + +QG +L L G
Sbjct: 231 NITVANSLCMWSRGRCEKLTWDMQGHHFCFNIRVLELGG 269
>gi|108862626|gb|ABA98029.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1541
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEP-GCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ E C L V + + L S R V+++
Sbjct: 590 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQAL-SLQRSPSVRIE 648
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
+QG A LL + D +LG WL ++ ++ + DG VT+ ++
Sbjct: 649 IQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSES 708
Query: 218 LKAI 221
L++I
Sbjct: 709 LRSI 712
>gi|449464816|ref|XP_004150125.1| PREDICTED: uncharacterized protein LOC101220785 [Cucumis sativus]
Length = 2047
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 7/164 (4%)
Query: 41 QKYTFGHKCK----KLFLIEAEEGDEPKEH-EKEKDVTQETPAI--SLHALARVQSPQTM 93
+ ++ G +CK +L+L+ + D E E E + + +P + SL+++ + +P T
Sbjct: 706 EPFSKGQRCKNKELRLYLVANDLEDTKMEDVENENAMVEVSPVVELSLNSVVGLTAPSTF 765
Query: 94 RLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKG 153
+++ ++ + I++D G+THNF+ + L V++ + + + G CKG
Sbjct: 766 KVKGTVEDREIIIMVDCGATHNFISLMRVEKLKLPMAETTNYDVIMGSRKAVQGRGMCKG 825
Query: 154 VQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKM 197
+ + L I F L L D VL W L DF M
Sbjct: 826 ITVGLPVLTIIEDFLPLELGNLDMVLVKTWQLDDQGFLVDFRAM 869
>gi|62734395|gb|AAX96504.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550471|gb|ABA93268.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1506
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 27/143 (18%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGR-------C 151
+ LT+L DSG+TH+F+ AK LK+E +++ ++ SPG C
Sbjct: 411 VHSIPLTVLFDSGATHSFMSTLKAKQLDLKTE-------FLSDAMRIQSPGSTMVTKLLC 463
Query: 152 KGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL-------------CTLGSILWDFDKME 198
KGV+L + G + +A LL G + +LG WL TL S F +
Sbjct: 464 KGVELIIDGVKFKANLILLDTLGLNVILGMDWLTKHEGTIDCAHRTVTLRSTDGQFVRFT 523
Query: 199 MQFTKDGHQVTLRGATTSELKAI 221
+ T +Q +++ + ELK++
Sbjct: 524 FEQTSTSNQPSIQSLSIPELKSV 546
>gi|449502909|ref|XP_004161777.1| PREDICTED: uncharacterized protein LOC101232599 [Cucumis sativus]
Length = 446
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 20/153 (13%)
Query: 41 QKYTFGHKCK-------KLFLIEAEEGDEP------------KEHEKEKDVTQETPAISL 81
+KY GHKCK ++F++ A++ +E K E + D+ E + +
Sbjct: 295 EKYYSGHKCKAKEIRELRMFVVRADDVEEEIIEEDEYDLKGLKTMELQNDLG-EVVELCI 353
Query: 82 HALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVAN 141
+++ + +P TM+++ +I + +L+D G+THNF+ + L S+ V++ +
Sbjct: 354 NSVVGLTNPGTMKIRGTIQSKEVVVLVDCGATHNFISDRLVMTLKLPSKDTSNYGVILGS 413
Query: 142 GEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEG 174
G + C+ V+L L G + F L EG
Sbjct: 414 GTTIKGKRVCEKVELDLNGWTVMENFLPLDWEG 446
>gi|77554705|gb|ABA97501.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 595
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA+ G++ E +V + S R V++++
Sbjct: 372 VNSVPATVLFDSGATHSFLSMSFARNHGMEVEDLRRPLMVSTPSNQALSSQRSPSVRIEI 431
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ + L
Sbjct: 432 QGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGQVVTVYALPSEPL 491
Query: 219 KA 220
++
Sbjct: 492 RS 493
>gi|41469587|gb|AAS07330.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108710255|gb|ABF98050.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1294
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ E +V + S R V+++
Sbjct: 328 PVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSSQRSPSVRIE 387
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
+QG A LL + D +LG WL ++ ++ + DG VT+ T+
Sbjct: 388 IQGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGQVVTVHALTSEP 447
Query: 218 LKA 220
L++
Sbjct: 448 LRS 450
>gi|116308831|emb|CAH65969.1| H0820C10.2 [Oryza sativa Indica Group]
Length = 1685
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ E +V + S R V+++
Sbjct: 581 PVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVKIE 640
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
+QG A LL + D +LG WL S++ ++ + DG VT+ +T
Sbjct: 641 IQGVPFLANLILLKSKDLDVILGMDWLARHKSVIDCANRKVTLTSHDGRVVTVHAMSTES 700
Query: 218 LKA 220
L++
Sbjct: 701 LRS 703
>gi|147809918|emb|CAN71623.1| hypothetical protein VITISV_025787 [Vitis vinifera]
Length = 569
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 41 QKYTFGHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSIS 100
+KYT GHKCKKLF IE EE E E++ +ET AISLHALA VQSPQTMR+ S I
Sbjct: 181 EKYTMGHKCKKLFFIELEEE---NEEAIEEEYVEETLAISLHALAGVQSPQTMRIHSQIG 237
Query: 101 KASLTI 106
+ +
Sbjct: 238 SGPICV 243
>gi|77552304|gb|ABA95101.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1651
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 36/188 (19%)
Query: 2 VSEYQTRFERLLARAGHLTD--KQEAECFISGLKDGLRTDVQKY---TFGHKCKKLFLIE 56
V+EY +RF +L A D K++ F+ G+ GLR + + TF H K L+E
Sbjct: 543 VNEYLSRFNKLARYAPEEVDFDKKKIRKFLKGIAVGLRIQLIAHDFPTFQHMVNKALLLE 602
Query: 57 AEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNF 116
+ +E++K K T + P G++H+F
Sbjct: 603 DARKEATEEYKKRKS-THQAPLFR------------------------------GASHSF 631
Query: 117 LHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCD 176
+ F K G K++ + V+ + G + + C V L ++G A +L +G D
Sbjct: 632 ISQAFVKRNGWKTQNLQVPMVIHSPGRDIRADKLCPKVDLVIEGVSFAAKPIVLDSQGLD 691
Query: 177 AVLGAQWL 184
+LG WL
Sbjct: 692 VILGMDWL 699
>gi|449466919|ref|XP_004151173.1| PREDICTED: uncharacterized protein LOC101214111 [Cucumis sativus]
Length = 503
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 44/188 (23%)
Query: 41 QKYTFGHKCK-------KLFLIEAEE--GDEPKEHEKEKDVTQ-------ETPAISLHAL 84
+KY+ GH+CK LF++ EE GD+ ++V + ET I L +
Sbjct: 193 EKYSPGHRCKVREKREPMLFILNEEESNGDDSSSEGVAEEVIELNQLDLAETTEIELRTI 252
Query: 85 ARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEK 144
S TM+L+ + K + G V + + +
Sbjct: 253 TNFTSKGTMKLKGKV----------------------------KGKRGTQFVVTIGDDTR 284
Query: 145 LTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD 204
G CK V+L+LQ I A F + L D VLG QWL T+G++ + + M F
Sbjct: 285 CKGRGVCKRVELRLQELTIIADFLAVELGNVDLVLGMQWLDTIGTMKVHWPSLTMTFLAK 344
Query: 205 GHQVTLRG 212
++ L+G
Sbjct: 345 DKKIVLKG 352
>gi|54287530|gb|AAV31274.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54287634|gb|AAV31378.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1400
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 58/123 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ T+L DSG+TH+FL FA G++ E +V + S R V+++
Sbjct: 369 SVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 428
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
+QG A LL + D +LG WL ++ ++ + DG VT+ ++
Sbjct: 429 IQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLISNDGRVVTVHALSSES 488
Query: 218 LKA 220
L++
Sbjct: 489 LRS 491
>gi|31432273|gb|AAP53928.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1364
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ TIL DSG+TH+F+ KF + GL+ E L V G TS
Sbjct: 394 APEVVLGTFPVNSIPATILFDSGATHSFISKKFVGMHGLRKEELSTLMRVYTLGNSSTSV 453
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
V +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 454 SFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCVNRTVTLTNEKGETV 513
Query: 209 TL-------RGATTSELKA-IEGDTIQKTLRK 232
RG + ++++ I DT++K LRK
Sbjct: 514 VYKSPDSPKRGVSLNQIETEIPVDTVEKNLRK 545
>gi|147790727|emb|CAN70128.1| hypothetical protein VITISV_002403 [Vitis vinifera]
Length = 770
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 42 KYTFGHKCK--KLFLIEA----------EEGDEPKEHEKEKDVTQETPAISLHALARVQS 89
K+T GH+C+ +L L+E E DE + D+ + P ISLH L
Sbjct: 224 KFTVGHRCQGPQLLLLEGHTKTNEIMCEEVVDENSIENQHADLIE--PKISLHVLTGWSI 281
Query: 90 PQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGL 127
P+TMR+++ I + +LID STHNFL K +I L
Sbjct: 282 PRTMRIKAQIGHHEIKVLIDRRSTHNFLSAKMVEILQL 319
>gi|77556045|gb|ABA98841.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1470
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 392 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 451
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 452 QGVPFRANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTVHALSSESL 511
Query: 219 KA 220
++
Sbjct: 512 RS 513
>gi|38346992|emb|CAD40278.2| OSJNBb0062H02.17 [Oryza sativa Japonica Group]
gi|38347666|emb|CAE05600.2| OSJNBa0054D14.1 [Oryza sativa Japonica Group]
Length = 1629
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 10/184 (5%)
Query: 41 QKYTFGHKCKKLFLIEAEEGDEPKEHEKEKD--------VTQETPAISLHALARVQSPQT 92
+K++ HKC + A + HE +D V Q A+SL A+ ++
Sbjct: 418 EKWSPTHKCSNTVQLHAVQELFTVLHESVEDGLSTTDHVVEQTLMAVSLQAVQGTETGGC 477
Query: 93 MRLQSSISKASLTILIDSGSTHNFLHHKFA-KITGLKSEPGCLLSVVVANGEKLTSPGRC 151
MR+ I + IL+DSGS+ +F+ + A + G+ +P + V+VA G KL
Sbjct: 478 MRMLGQIQGKEILILVDSGSSASFISKRVASSLMGVLEQP-VHVQVMVAGGAKLHCCSEI 536
Query: 152 KGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLR 211
+ +QG +L L D +LG WL + D+ + G Q+ L
Sbjct: 537 LNCEWTIQGHVFFTNLKVLELNNYDMILGMDWLMQHSPMTVDWTTKSLIIAYAGTQIQLY 596
Query: 212 GATT 215
G +
Sbjct: 597 GVRS 600
>gi|62733144|gb|AAX95261.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|62733825|gb|AAX95934.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550593|gb|ABA93390.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1398
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V A + S R V++++
Sbjct: 341 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSAPSNQALSLQRSPSVRIEI 400
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 401 QGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTVHALSSESL 460
Query: 219 KA 220
++
Sbjct: 461 RS 462
>gi|77554637|gb|ABA97433.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1672
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + SI+ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 584 APEVVLGTFSINSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 643
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 644 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 703
Query: 209 TLR-------GATTSELKA-IEGDTIQKTLRK 232
+ G + ++++A I DT++K LRK
Sbjct: 704 VYKSLVSPKQGVSLNQIEAEIPVDTVEKNLRK 735
>gi|62734186|gb|AAX96295.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77548986|gb|ABA91783.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1760
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E L V G TS
Sbjct: 647 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTLMRVHTPGNSSTSV 706
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 707 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 766
Query: 209 TLR-------GATTSELKA-IEGDTIQKTLRK 232
+ G + ++++A I DT++K LRK
Sbjct: 767 VYKSPDSPKQGVSLNQIEAEIPVDTVEKKLRK 798
>gi|116317768|emb|CAH65747.1| OSIGBa0102B11.1 [Oryza sativa Indica Group]
Length = 1601
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL +FA G++ E +V + S R V+++
Sbjct: 617 PVNSVPATVLFDSGATHSFLSMRFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 676
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
++G A LL + D +LG WL ++ ++ + DG VT+ +T
Sbjct: 677 IKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTIHAMSTES 736
Query: 218 LKA 220
L++
Sbjct: 737 LRS 739
>gi|22857578|gb|AAN09852.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1715
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEP-GCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ E C L V + + L S R V+++
Sbjct: 612 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQAL-SLQRSPSVRIE 670
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
+QG A LL + D +LG WL ++ ++ + DG VT+ ++
Sbjct: 671 IQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSES 730
Query: 218 LKA 220
L++
Sbjct: 731 LRS 733
>gi|449530792|ref|XP_004172376.1| PREDICTED: uncharacterized protein LOC101223371 [Cucumis sativus]
Length = 943
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 81 LHALARVQSPQTMRLQSSISKASLTILIDSGS-----THNFLHHKFAKITGLKSEPGCLL 135
L+A+ VQ QT+ +S S+ L + G+ +NF+ + + ++
Sbjct: 388 LNAVEVVQEEQTV---VELSINSVVGLSNPGTMKIAEPYNFISESLVEELHINTKSTTNY 444
Query: 136 SVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFD 195
V++ +G + C+ +++ L ++ F L L G DA+LG QWL +LG D+
Sbjct: 445 GVILGSGTAIKGKRVCEAIEMVLGKWRVVDDFLPLELGGVDAILGMQWLYSLGITEVDWK 504
Query: 196 KMEMQFTKDGHQVTLRG 212
+ + FT D +V +RG
Sbjct: 505 NLILTFTHDEEKVVMRG 521
>gi|190688735|gb|ACE86398.1| putative retroelement protein [Sorghum bicolor]
Length = 249
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 1 MVSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQKYTFGHKCKKLFLIEAEEG 60
MV E+ F+ +LA ++ +Q+AE F+ GL + + D Y LF +
Sbjct: 135 MVEEFAGYFQAVLAHTQDISTRQKAELFVGGLPNHIGVDSSDYI----DDDLFTATEDAA 190
Query: 61 DEPKEHE--KEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFL 117
D E V +S++ALA + + TM L +I+ L L+D+GSTH FL
Sbjct: 191 DATVESPMAPPDGVAARALVVSVYALAGIHTYHTMLLAITINGECLLALLDTGSTHTFL 249
>gi|77551679|gb|ABA94476.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 940
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%)
Query: 68 KEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGL 127
+E +V E IS A+ ++ T+RLQ + + +L+DSGSTH+F+ G
Sbjct: 381 EETEVNGEVCQISKEAMLETETSGTLRLQGLMQHHQIMLLVDSGSTHSFVSAALDDKLGG 440
Query: 128 KSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTL 187
K + V +A+G L +QG +L L D +LG WL
Sbjct: 441 KQRAVPAIKVRIADGGILHCNKEIVDCLWLVQGESFLTSLKVLPLGNYDVILGMDWLEQH 500
Query: 188 GSILWDFDKMEMQFTKDGHQVTLRGATTS 216
+ D+ +QF + ++ L+G T +
Sbjct: 501 SPMKVDWRAKTLQFHYNQKEICLKGVTAN 529
>gi|110288769|gb|ABG65971.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1475
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEP-GCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ E C L V + + L S R V+++
Sbjct: 372 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQAL-SLQRSPSVRIE 430
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
+QG A LL + D +LG WL ++ ++ + DG VT+ ++
Sbjct: 431 IQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSES 490
Query: 218 LKA 220
L++
Sbjct: 491 LRS 493
>gi|38347240|emb|CAE05433.2| OSJNBa0059H15.4 [Oryza sativa Japonica Group]
Length = 407
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 29/142 (20%)
Query: 78 AISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLH----HKFAKITGLKSEPGC 133
A+SL A++ +S + R++ I + +LIDSGS+H+FL HKF + L+
Sbjct: 70 ALSLQAISGTESATSFRIKGCIQGTEVLMLIDSGSSHSFLDTQVAHKFQGVQPLQK---- 125
Query: 134 LLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWD 193
+LSV +G F LLSL D +LG WL TLG++ D
Sbjct: 126 VLSV---------------------KGVGFHTDFKLLSLGVYDVILGMDWLVTLGTMNID 164
Query: 194 FDKMEMQFTKDGHQVTLRGATT 215
+ M++ + ++G T
Sbjct: 165 WAAKWMEYQLGNKTIRIQGIQT 186
>gi|77554454|gb|ABA97250.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1429
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGL-KSEPGCLLSVVVANGEKLTS 147
+P+ + ++ T+L DSG+TH+F+ KF + GL + EP + V G TS
Sbjct: 376 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREEPSTPMRVHTP-GNSSTS 434
Query: 148 PGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQ 207
+ +++Q + A LL + D +LG WL ++ ++ + G
Sbjct: 435 VQFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGET 494
Query: 208 VTLR-------GATTSELKA-IEGDTIQKTLRK 232
V + G + ++++A I DT++K LRK
Sbjct: 495 VVYKSLVSPKQGVSLNQIEAEIPVDTVEKNLRK 527
>gi|77552523|gb|ABA95320.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 584
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%)
Query: 65 EHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKI 124
E K++ +E ++S A + P T + I+ LIDSGST F+ H+FA
Sbjct: 467 EAPKQEGAHEELMSVSFSAASGTTRPDTFSVLIMINGKQAVGLIDSGSTGTFMTHEFAVK 526
Query: 125 TGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGA 181
+ V+VA G +L S V ++QG + F L++L+G D +LGA
Sbjct: 527 CKCPIATSTIKKVIVAGGGELKSNLVVPEVAYKIQGVKFVNAFSLITLKGYDVILGA 583
>gi|77557165|gb|ABA99961.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1619
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 15/186 (8%)
Query: 41 QKYTFGHKCKK------------LFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQ 88
+K++ HKC LFL E + E + + +T+E AISL A+ +
Sbjct: 407 EKWSPNHKCASSVQLNVVQELLCLFL-EEDSHVESENAGQNGSLTRELMAISLQAVQGTE 465
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAK-ITGLKSEPGCLLSVVVANGEKLTS 147
TMR+ + L +L+DSGS+ +F+ + A+ +TG++ LSV VANGE L
Sbjct: 466 PDGTMRMLGQLQGKELLVLVDSGSSVSFISSQIAEGLTGIQPL-SRRLSVRVANGETLCC 524
Query: 148 PGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQ 207
+ Q+QG + + +L + D +LG WL + D+ + + G
Sbjct: 525 GAIIPNCEWQVQGHKFQTTLRVLPITSYDMILGMDWLMKHSPMSVDWSLKTITLSLQGTT 584
Query: 208 VTLRGA 213
VTL+G
Sbjct: 585 VTLQGV 590
>gi|77550665|gb|ABA93462.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1687
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 606 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 665
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++QG+ A LL + + +LG WL ++ ++ + G V
Sbjct: 666 QFSPSITIEIQGSPFLANLILLESKDLNVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 725
Query: 209 TL-------RGATTSELKA-IEGDTIQKTLRK 232
RG + ++++A I DT++K LR+
Sbjct: 726 VYESPDAPKRGVSLNQIEAEIPVDTVEKNLRE 757
>gi|242117586|dbj|BAH80069.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1475
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ E +V + S R V+++
Sbjct: 371 PVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 430
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
+QG A LL + D +LG WL ++ ++ + DG VT+ +T
Sbjct: 431 IQGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGQVVTVHALSTES 490
Query: 218 LKA 220
L++
Sbjct: 491 LRS 493
>gi|57834137|emb|CAE05578.3| OSJNBa0032N05.6 [Oryza sativa Japonica Group]
Length = 1528
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 83 ALARVQSPQTMRLQS-SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVAN 141
A A Q M L + ++ T+L DSG+TH+FL FA G++ E +V
Sbjct: 473 AAAEAQDAPDMILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTP 532
Query: 142 GEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQF 201
G + S R V+++++G A LL + D +LG WL ++ ++
Sbjct: 533 GNQALSLQRSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLT 592
Query: 202 TKDGHQVTLRGATTSELKA 220
+ DG VT+ ++ L++
Sbjct: 593 SNDGRVVTVNALSSESLRS 611
>gi|110288626|gb|ABB46774.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1695
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEP-GCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ E C L V + + L S R V+++
Sbjct: 592 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQAL-SLQRSPSVRIE 650
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
+QG A LL + D +LG WL ++ ++ + DG VT+ ++
Sbjct: 651 IQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSEF 710
Query: 218 LKA 220
L++
Sbjct: 711 LRS 713
>gi|20177640|gb|AAM14695.1|AC097446_24 Putative polyprotein [Oryza sativa Japonica Group]
Length = 1680
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEP-GCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ E C L V + + L S R V+++
Sbjct: 577 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQAL-SLQRSPSVRIE 635
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
+QG A LL + D +LG WL ++ ++ + DG VT+ ++
Sbjct: 636 IQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSEF 695
Query: 218 LKA 220
L++
Sbjct: 696 LRS 698
>gi|440577377|emb|CCI55401.1| PH01B015M02.2 [Phyllostachys edulis]
Length = 1655
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%)
Query: 47 HKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTI 106
H ++++ + + EP E E AIS+ A+ +SP+T+RL+ + + I
Sbjct: 346 HLVQEMWELVQDPNLEPTPSEGGTSQGNEVLAISVAAVKGGESPKTVRLKGIVQGMEVLI 405
Query: 107 LIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQI 163
LIDSGSTH+F+ A K E ++V +A+G LTS Q+QG +
Sbjct: 406 LIDSGSTHSFVGEALANKLKGKHESFRRVNVTIADGGTLTSTKEFPDCYWQVQGVKF 462
>gi|449479939|ref|XP_004155753.1| PREDICTED: enzymatic polyprotein-like [Cucumis sativus]
Length = 426
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%)
Query: 135 LSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDF 194
V + +G L G CK V+++L +I A F + L D VLG QWLCT G + +
Sbjct: 121 FGVTIGDGTALEGKGVCKRVEVKLPELKIVADFLAIKLGRIDVVLGMQWLCTTGFMGVHW 180
Query: 195 DKMEMQFTKDGHQVTLRGATTSELKAIEGDTIQKT 229
M M F QV L+G + TI KT
Sbjct: 181 PTMTMTFMAGTTQVILKGDPSITKTECSLKTISKT 215
>gi|449455495|ref|XP_004145488.1| PREDICTED: uncharacterized protein LOC101209704 [Cucumis sativus]
Length = 1503
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 127 LKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCT 186
L +PG V + NG + G CK V+++L+ I A F + L D VLG QWL +
Sbjct: 665 LSIDPGTRFGVTIGNGNQCEGSGICKRVKVKLKELTIVADFLAVELGTVDLVLGMQWLDS 724
Query: 187 LGSILWDFDKMEMQFTKDGHQVTLRG 212
G++ + + M F G ++ L+G
Sbjct: 725 TGTMKVHWPSLTMTFWMKGRRIILKG 750
>gi|259490591|ref|NP_001159320.1| uncharacterized protein LOC100304412 [Zea mays]
gi|223943397|gb|ACN25782.1| unknown [Zea mays]
Length = 725
Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 17/157 (10%)
Query: 41 QKYTFGHKCKKLF----------LIEAEEGDEPKEHEKEKDVTQETP---AISLHALARV 87
+K+ GH C L+ G++ HE+ T E P AIS A+
Sbjct: 405 EKWHRGHTCNATVQLHALQEVWELLSENSGEDSSIHEQ----TLEEPIIMAISAEAVTGS 460
Query: 88 QSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTS 147
+ ++MR S+ + IL+DSGSTH+F++ + + V VANG L+
Sbjct: 461 SAKRSMRFLGSMLGKDILILVDSGSTHSFINQSTVQHHTIVPVAATPFRVQVANGGLLSC 520
Query: 148 PGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
+QG + +L L D +LG WL
Sbjct: 521 DKMIPHAVWSIQGCEFSQDLRVLPLPKFDLILGMDWL 557
>gi|116309029|emb|CAH66143.1| OSIGBa0114M03.1 [Oryza sativa Indica Group]
Length = 1571
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G+K E +V + S R V++++
Sbjct: 563 VNSVPATVLFDSGATHSFLSMSFAGNHGMKVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 622
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 623 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKITLTSNDGRVVTVHALSSEFL 682
Query: 219 KA 220
++
Sbjct: 683 RS 684
>gi|77549283|gb|ABA92080.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1529
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 569 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPMMVSTPSNQALSLQRSPSVRIEI 628
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 629 QGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTVYALSSESL 688
Query: 219 KA 220
++
Sbjct: 689 RS 690
>gi|288819264|gb|ADC55379.1| gag-pol polyprotein [Oryza brachyantha]
Length = 1393
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ TIL DSG+TH+F+ KF + GLK E V G + S
Sbjct: 387 APEVILGTFPVNSVPATILFDSGATHSFISRKFVGMLGLKREKLRDPMRVNTPGHSMFSD 446
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
V +++QGT A LL + D +LG WL
Sbjct: 447 LYSPVVPIEIQGTPFLANLILLESKDLDVILGMDWL 482
>gi|293331925|ref|NP_001168083.1| uncharacterized protein LOC100381817 [Zea mays]
gi|223945897|gb|ACN27032.1| unknown [Zea mays]
Length = 117
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 79 ISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFA-KITGLK--SEPGCLL 135
+S+ A++R+ P+T L I ++ I++DS S+H+FL K A ++ G+ S P +
Sbjct: 3 VSVAAVSRMPGPRTFCLGGIIHHQAVRIMVDSDSSHSFLKTKLATQLQGIVPLSVP---I 59
Query: 136 SVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
V VANG +L C +Q F +L + DA+LG WL
Sbjct: 60 VVQVANGARLQCSAHCPATAWSVQEFTFSTDFKILDVFSYDAILGIDWL 108
>gi|255559780|ref|XP_002520909.1| conserved hypothetical protein [Ricinus communis]
gi|223539875|gb|EEF41454.1| conserved hypothetical protein [Ricinus communis]
Length = 150
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 87 VQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLT 146
+++PQ+M+++ S+ L +LIDS STHNF+ + + + V+VANGE++
Sbjct: 63 IRAPQSMQVKGSVGGWPLLVLIDSRSTHNFVDEALEEQLRAPVDQWDIPQVLVANGERVC 122
Query: 147 SPGRCKGVQLQL--QGTQIEAYFYLLSL 172
+ + K QLQL Q IE YL+ +
Sbjct: 123 NLDKWKKSQLQLGNQKFNIEYLCYLVWI 150
>gi|108862342|gb|ABA96234.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1407
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 304 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 363
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ +K + DG VT+ ++ L
Sbjct: 364 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANKKVTLTSYDGRVVTVHALSSESL 423
Query: 219 KA 220
++
Sbjct: 424 RS 425
>gi|242117488|dbj|BAH79971.1| hypothetical protein [Oryza sativa Indica Group]
Length = 1477
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 83 ALARVQSPQTMRLQS-SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVAN 141
A A Q M L + ++ T+L DSG+TH+FL FA G++ E +V
Sbjct: 357 AAAEAQDAPDMILGTFPVNSVPATVLFDSGATHSFLSLSFAGNHGMEVEDLRRPLMVSTP 416
Query: 142 GEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQF 201
+ S R V++++QG A LL + D +LG WL ++ +K
Sbjct: 417 SNQALSLQRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLTRHKGVIDCANKKVTLT 476
Query: 202 TKDGHQVTLRGATTSELKA 220
+ DG VT++ ++ L++
Sbjct: 477 SNDGRVVTVQALSSESLRS 495
>gi|6598587|gb|AAF18642.1|AC006228_13 F5J5.15 [Arabidopsis thaliana]
Length = 1617
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 73/292 (25%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAEC--FISGLKDGLRTDVQKYTFGHKCKKLFL-IEAE 58
V EY F+RLL AG + +A+ F+ GL+ LR V + + KK+ +
Sbjct: 265 VREYGREFKRLLVYAGRGMEDDQAQMRRFLRGLRPDLRRQVVAVSPSVQPKKIQQQVAPS 324
Query: 59 EGDEPKEHEKEK---------------------DVTQET-----PAIS------------ 80
+G +P + +K K D Q T PA+
Sbjct: 325 KGGKPAQVQKRKWDHPFRAGQGGRAGCFSCENLDHKQMTVALVQPAVQHRAQVQQGVQQN 384
Query: 81 ----LHALARVQSPQTMRLQSSISKASLT----------------ILIDSGSTHNFLHHK 120
H +A T + S+ ++A + +L DSG++H F+ +
Sbjct: 385 VQQLAHIVAAPHGYTTREIGSTSNRAIIGFLAYKVCVGTLLVGGHVLFDSGASHCFITPE 444
Query: 121 FAKITGLKSEPGCLLSVV-VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVL 179
A ++ EPG V +A G+ LT GR KGV +Q++ + A + + DA+L
Sbjct: 445 SASRDNIRGEPGEQFGAVKIAGGQFLTVLGRAKGVNIQIEEESMPADLIINPVVLYDAIL 504
Query: 180 GAQWL--------CTLGSILWDFDKMEMQFT-KDGHQVTLRGATTSELKAIE 222
G WL C G + F++ E + ++ + LRG S++ ++
Sbjct: 505 GMDWLDHYRVHLDCHRGRV--SFERPEGRSAGRENDREGLRGLPVSDIWVVQ 554
>gi|62733140|gb|AAX95257.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550597|gb|ABA93394.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1214
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 626 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 685
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 686 QGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTVHALSSESL 745
Query: 219 KA 220
++
Sbjct: 746 RS 747
>gi|62733632|gb|AAX95749.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|110288789|gb|AAP52632.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1608
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 581 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 640
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ +K + DG VT+ ++ L
Sbjct: 641 QGVPFLANLILLESKDLDVILGMDWLAKHKGVIDCANKKVTLTSYDGRVVTVHALSSESL 700
Query: 219 KA 220
++
Sbjct: 701 RS 702
>gi|29244670|gb|AAO73263.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108709213|gb|ABF97008.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1652
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 549 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPMMVSTPSNQALSLQRSPSVRIEI 608
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 609 QGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTVYALSSESL 668
Query: 219 KA 220
++
Sbjct: 669 RS 670
>gi|32489966|emb|CAE05583.1| OSJNBa0032N05.11 [Oryza sativa Japonica Group]
Length = 1412
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 370 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 429
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ +K + DG VT+ ++ L
Sbjct: 430 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANKKVTLTSYDGRVVTVHALSSESL 489
Query: 219 KA 220
++
Sbjct: 490 RS 491
>gi|147767990|emb|CAN67159.1| hypothetical protein VITISV_039497 [Vitis vinifera]
Length = 711
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 20/123 (16%)
Query: 110 SGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYL 169
SGSTHNF+ K A + L P +V VANG L GR + V + LQ
Sbjct: 212 SGSTHNFISEKVADMLHLPVVPTKPFTVKVANGTPLKCQGRFEHVHVILQ---------- 261
Query: 170 LSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKAIEGDTIQKT 229
G QWL LG ++ ++ K+ M F + L+G T ++ + K
Sbjct: 262 ----------GVQWLEQLGIVVCNWKKLTMVFQWENQTHKLQGTNTQIIQVASLKVVSKE 311
Query: 230 LRK 232
LR+
Sbjct: 312 LRQ 314
>gi|77555470|gb|ABA98266.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1473
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 370 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 429
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ +K + DG VT+ ++ L
Sbjct: 430 QGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCANKKVTLNSYDGRVVTVHALSSESL 489
Query: 219 KA 220
++
Sbjct: 490 RS 491
>gi|7682782|gb|AAF67363.1| Hypothetical protein T32B20.f [Arabidopsis thaliana]
Length = 1504
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 106 ILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVV-VANGEKLTSPGRCKGVQLQLQGTQIE 164
+L DSG++H F+ + A ++ +PG L V VA G+ L R KGV +Q+ G +
Sbjct: 454 VLFDSGASHCFITPESASRGNIRGDPGEQLGAVKVAGGQFLAVLERAKGVDIQIAGESMP 513
Query: 165 AYFYLLSLEGCDAVLGAQWL 184
A+ + +E D +LG WL
Sbjct: 514 AHLIISPVELYDVILGMDWL 533
>gi|38344461|emb|CAE04932.2| OSJNBa0017P10.9 [Oryza sativa Japonica Group]
Length = 1752
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 650 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 709
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 710 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 769
Query: 219 KA 220
++
Sbjct: 770 RS 771
>gi|77551120|gb|ABA93917.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1091
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 10/105 (9%)
Query: 47 HKCKKLF-LIEAEEGD--EPKE-HEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKA 102
H ++LF L + +E + P+E HE+E + AISL A+ R++S TMRL S+
Sbjct: 285 HSVQELFALFQHQESELLAPEEQHEQESQLM----AISLQAIQRIESAGTMRLLGSLQGK 340
Query: 103 SLTILIDSGSTHNFLHHKFA-KITGLKSEPGCLLSVVVANGEKLT 146
+ IL+DSGS+ NF+ K A + TGL+ + +SV VANG L+
Sbjct: 341 EVLILVDSGSSANFMSSKMADQQTGLQ-QLQSTVSVQVANGGVLS 384
>gi|39545598|emb|CAE02842.3| OSJNBa0014F04.8 [Oryza sativa Japonica Group]
Length = 1429
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 595 VNSVPATVLFDSGATHSFLSMSFAGNHGMEIEDLRRPLMVSTPSNQALSLKRSPSVRIEI 654
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 655 QGVSFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 714
Query: 219 KA 220
++
Sbjct: 715 RS 716
>gi|77555395|gb|ABA98191.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1412
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V ++ S R V++++
Sbjct: 369 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSDQALSLQRSPSVRIEI 428
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 429 QGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSESL 488
Query: 219 KA 220
++
Sbjct: 489 RS 490
>gi|62734515|gb|AAX96624.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550173|gb|ABA92970.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1509
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 93/236 (39%), Gaps = 53/236 (22%)
Query: 2 VSEYQTRFERLLARAGHL--TDKQEAECFISGLKDGLRTDVQKY---TFGHKCKKLFLIE 56
++EY ++F +L A TD ++ F+ G+ G+R + + TF H K L+E
Sbjct: 367 INEYLSQFNKLARYAPKEVDTDNKKIRKFLKGIAVGMRLQLLAHDFPTFQHMINKALLLE 426
Query: 57 AEEGDEPKEHEKEKDVTQ----------------------ETPAISL---HALARVQS-- 89
+ +E++K K Q TPA +L ++ AR Q
Sbjct: 427 DARKESAEEYKKRKSNHQGNSSRGAPRPRYGHANGSTARTPTPAAALSRPNSQARGQGSR 486
Query: 90 ---------------------PQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLK 128
P + S++ +L DSG++H+F+ F K G K
Sbjct: 487 ASNNFGRGRMNHIQAETAQDVPDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWK 546
Query: 129 SEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + +V + G + + C V L+++ A +L + D +LG WL
Sbjct: 547 TQNLHVPMIVHSPGRNIRATQICPEVNLRIEEVDFLAKPIVLDSQSLDIILGMDWL 602
>gi|38344597|emb|CAD39969.2| OSJNBa0072D08.2 [Oryza sativa Japonica Group]
Length = 1712
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 609 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 668
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 669 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 728
Query: 219 KA 220
++
Sbjct: 729 RS 730
>gi|39546223|emb|CAE04472.3| OSJNBa0029L02.13 [Oryza sativa Japonica Group]
Length = 1158
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL+ E V G T
Sbjct: 62 APEVVLGTFPVNSFPATVLFDSGATHSFISKKFVGMHGLRKEELSTPMRVHTPGNSSTLV 121
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
V +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 122 SFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGEAV 181
Query: 209 TLR-------GATTSELKA-IEGDTIQKTLRK 232
+ G + ++++A I DT++K LRK
Sbjct: 182 VYKSLVSPKQGVSLNQIEAEIPVDTVEKNLRK 213
>gi|108708504|gb|ABF96299.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1822
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 719 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 778
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ +K + DG VT+ ++ L
Sbjct: 779 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANKKVTLTSYDGRVVTVHALSSESL 838
Query: 219 KA 220
++
Sbjct: 839 RS 840
>gi|34015295|gb|AAQ56486.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2032
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 1003 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 1062
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 1063 QGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTITSNDGRVVTVHALSSEPL 1122
Query: 219 KA 220
++
Sbjct: 1123 RS 1124
>gi|108862586|gb|ABG22001.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1751
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 648 VNSVHATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 707
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 708 QGIPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTVHALSSETL 767
Query: 219 KA 220
++
Sbjct: 768 RS 769
>gi|77551562|gb|ABA94359.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1505
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 673 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 732
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ +++ L
Sbjct: 733 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSASL 792
Query: 219 KA 220
++
Sbjct: 793 RS 794
>gi|38346698|emb|CAE02183.2| OSJNBa0080E14.14 [Oryza sativa Japonica Group]
Length = 806
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 367 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLHRSPSVRIEI 426
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 427 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVYALSSESL 486
Query: 219 KA 220
++
Sbjct: 487 RS 488
>gi|108862189|gb|ABA96448.2| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
gi|215767578|dbj|BAG99806.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 649
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 104 LTILIDSGSTHNFLHHKFA-KITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQ 162
L +L+DSGSTH+F+ + K++G++ L+ V +A+G ++ + +QG Q
Sbjct: 3 LLMLVDSGSTHSFIDKEVGLKLSGIQKLKQPLI-VRIADGGTMSCTHEITNCKWWMQGYQ 61
Query: 163 IEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELK 219
F +L L D +LG WL ++ + D+ M+F G + ++G ++ ++
Sbjct: 62 FCNNFRMLPLGNYDIILGMDWLESISPMQVDWANKWMEFNHQGASIRVQGLLSTPVQ 118
>gi|49387854|dbj|BAD26519.1| hypothetical protein [Oryza sativa Japonica Group]
gi|50251633|dbj|BAD29636.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 214
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 47 HKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTI 106
H K + IE ++G P +++V ISL AL + Q M L ++ ++
Sbjct: 92 HGTKGAYWIEVDDGGCPSTPTDDEEV-----QISLVALVGICVTQMMLLPVVVNGETMVA 146
Query: 107 LIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGT 161
L+D+GS H FL A+ G++ P + V+VAN +K+ C G +L L+ T
Sbjct: 147 LVDTGSRHTFLSDDVARRLGVQHTPLLDIKVIVANSDKVP----CAGRRLDLRVT 197
>gi|22539088|gb|AAN01260.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431346|gb|AAP53141.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1683
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 645 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 704
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 705 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSESL 764
Query: 219 KA 220
++
Sbjct: 765 RS 766
>gi|449474333|ref|XP_004154142.1| PREDICTED: enzymatic polyprotein-like, partial [Cucumis sativus]
Length = 566
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 26/179 (14%)
Query: 41 QKYTFGHKCKK------LFLIEAEEGDEPKEHEKEKDVTQETPAISLHALA-RVQSPQTM 93
+KY+ GH+CK + LI EE D +E + E + ++ I L+ L + +P +
Sbjct: 124 EKYSPGHRCKGREKRELMLLILNEEEDHKREEDAEDEASE---VIELNHLELNMDNPIEL 180
Query: 94 RLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKG 153
RL + ++ S T H L + G V + NG + G CK
Sbjct: 181 RLITGVT---------SKRTKKLKGH-------LSIDLGTRFGVTIGNGNQCEGSGICKR 224
Query: 154 VQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
V+++L+ I A F + L D VLG QWL + G++ + + M F G ++ L+G
Sbjct: 225 VKVKLKELTIVADFLAVELGTVDLVLGMQWLDSTGTMKVHWPSLTMTFWTKGRRIILKG 283
>gi|108863002|gb|ABA99486.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1595
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEP-GCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L D G+TH+FL FA G++ E C L V + + L S R V+++
Sbjct: 594 VNSVPATVLFDFGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQAL-SLQRSPSVRIE 652
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
+QG A LL + D +LG WL ++ ++ + DG VT+ ++
Sbjct: 653 IQGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTVHALSSEF 712
Query: 218 LKA 220
L++
Sbjct: 713 LRS 715
>gi|3810595|gb|AAC69377.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1328
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 106 ILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVV-VANGEKLTSPGRCKGVQLQLQGTQIE 164
+L DSG++H F+ + A ++ +PG L V VA G+ + GR KGV +Q+ G +
Sbjct: 315 VLFDSGASHCFITPESASRGNIRGDPGEQLGAVKVAGGQFVAVLGRTKGVDIQIAGESMP 374
Query: 165 AYFYLLSLEGCDAVLGAQWL 184
A + +E D +LG WL
Sbjct: 375 ADLIISPVELYDVILGMDWL 394
>gi|20042994|gb|AAM08802.1|AC090486_12 putative retroelement [Oryza sativa Japonica Group]
gi|31431155|gb|AAP52977.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1594
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V ++ S R V++++
Sbjct: 632 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQVLSLRRSPSVRIEI 691
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
QG A LL + D +LG WL ++ ++ + DG VT+
Sbjct: 692 QGVPFLANLILLESKDLDVILGMDWLARYKGVINCANRKVTLTSNDGRVVTV 743
>gi|77556423|gb|ABA99219.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2360
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 370 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 429
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 430 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSESL 489
Query: 219 KA 220
++
Sbjct: 490 RS 491
>gi|21672026|gb|AAM74388.1|AC119149_3 Putative retroelement [Oryza sativa Japonica Group]
Length = 1458
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ TIL DSG+TH+F+ KF + GL+ E V G TS
Sbjct: 388 APEVVLGTFPVNSIPATILFDSGATHSFISKKFVGMHGLRKEELSTPMRVHTPGNSSTSV 447
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
V +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 448 SFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 507
Query: 209 TLR-------GATTSELKA-IEGDTIQKTLRK 232
+ G + ++++A I DT++K LRK
Sbjct: 508 VYKSPDSPKQGVSLNQIEAEIPVDTVEKNLRK 539
>gi|19881569|gb|AAM00970.1|AC021892_34 Putative retroelement [Oryza sativa Japonica Group]
gi|78708151|gb|ABB47126.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1425
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ TIL DSG+TH+F+ KF + GL+ E V G TS
Sbjct: 355 APEVVLGTFPVNSIPATILFDSGATHSFISKKFVGMHGLRKEELSTPMRVHTPGNSSTSV 414
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
V +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 415 SFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 474
Query: 209 TLR-------GATTSELKA-IEGDTIQKTLRK 232
+ G + ++++A I DT++K LRK
Sbjct: 475 VYKSPDSPKQGVSLNQIEAEIPVDTVEKNLRK 506
>gi|110289425|gb|AAP54660.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 768
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 19/153 (12%)
Query: 13 LARAGHLTDKQEAE--CFISGLKDGLRTDVQKYTFGHKCKKLFLIEAEEGDEPKEHE--- 67
L +A L D + A+ CF G KYT H+C I+A + +E +
Sbjct: 313 LWKAKQLKDYRRAQGLCFKCG---------DKYTPEHRCAVGGQIKAMQLEEVLTDDILD 363
Query: 68 ----KEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAK 123
E+ +E ISL+AL P + L++ + L +L+D GS+H+F+ + FA+
Sbjct: 364 AVIAAEQSDDEEDCHISLNALTGAHLPTAILLRALVHSKVLLLLVDYGSSHSFIDYNFAQ 423
Query: 124 ITGLKSEPGCLLSVVVANGEKLT-SPGRCKGVQ 155
+ GL +P V VANG+ L P R +Q
Sbjct: 424 MLGLPLKPIPSTLVKVANGDCLPCQPYRYSPLQ 456
>gi|108862183|gb|ABA96440.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1652
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ TIL DSG+TH+F+ KF + GL+ E V G TS
Sbjct: 640 TPEVVLGTFPVNSIPATILFDSGATHSFISKKFVGMHGLRKEELSTPMRVHTPGNSSTSV 699
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
V +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 700 SFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 759
Query: 209 TL-------RGATTSELKA-IEGDTIQKTLRK 232
RG + ++++ I DT++K LRK
Sbjct: 760 VYKSPDSPKRGVSLNQIETKIPEDTVEKNLRK 791
>gi|215707240|dbj|BAG93700.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 535
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 13/185 (7%)
Query: 40 VQKYTFGHKC---------KKLFLIEAEEGDEP---KEHEKEKDVTQETPAISLHALARV 87
+K++ HKC ++LF + E DE E+ D +Q AIS+HA+
Sbjct: 338 AEKWSPTHKCANTVQLHAVQELFSVLHEACDEAVCNPENSVLSD-SQVLMAISVHAVQGS 396
Query: 88 QSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTS 147
++ MR+ I + IL+DSGST +F+ + A+ S+ L V VA+G L
Sbjct: 397 EASGCMRMLGQIQGKDVFILVDSGSTASFISARVAEGLSELSQIATNLQVKVADGATLHC 456
Query: 148 PGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQ 207
+ QG + +L L D +LG WL + ++ +
Sbjct: 457 QSEIPACEWSTQGQKFCTTLKILPLGNYDMILGMDWLMQHSPMTVNWVTKSLTIEGRNPV 516
Query: 208 VTLRG 212
VTL+G
Sbjct: 517 VTLQG 521
>gi|147791940|emb|CAN72445.1| hypothetical protein VITISV_026551 [Vitis vinifera]
Length = 721
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 26/33 (78%)
Query: 9 FERLLARAGHLTDKQEAECFISGLKDGLRTDVQ 41
ERLLARA L DKQEAEC IS LKDGLR DV+
Sbjct: 141 LERLLARADTLIDKQEAECLISRLKDGLRXDVR 173
>gi|22725934|gb|AAN04944.1| Putative polyprotein [Oryza sativa Japonica Group]
Length = 1078
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 588 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 647
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 648 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 707
Query: 219 KA 220
++
Sbjct: 708 RS 709
>gi|77549254|gb|ABA92051.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1777
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF ++ GL E V G TS
Sbjct: 650 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVRMHGLIREELSTPMRVHTPGNSSTSV 709
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ D + T + +
Sbjct: 710 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCASRTVTLTNEKGET 768
Query: 209 TLRGATTSELKA---------IEGDTIQKTLRK 232
+ + S K I DT++K LRK
Sbjct: 769 VVYKSLVSPKKGVSLNQIETEIPVDTVEKNLRK 801
>gi|38567947|emb|CAE04776.3| OSJNBb0115I21.3 [Oryza sativa Japonica Group]
Length = 1779
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 676 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 735
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 736 QGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSESL 795
Query: 219 KA 220
++
Sbjct: 796 RS 797
>gi|18425261|gb|AAL69439.1|AC098565_21 Putative polyprotein [Oryza sativa]
Length = 1181
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 394 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 453
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + + A LL + D +LG WL ++ D + T + +
Sbjct: 454 QFSPSITIEIQRSPVLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGET 512
Query: 209 TLRGATTSELKA---------IEGDTIQKTLRK 232
+ + S K I DT++K LRK
Sbjct: 513 VVYKSLVSPKKGVSLNQIETEIPVDTVEKNLRK 545
>gi|77555575|gb|ABA98371.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 452
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ E +V ++ S R V+++
Sbjct: 139 PVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSDQALSLQRSPSVRIE 198
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
++G A LL + D +LG WL ++ ++ + DG VT+ ++
Sbjct: 199 IKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSES 258
Query: 218 LKA 220
L++
Sbjct: 259 LRS 261
>gi|23266283|gb|AAN16322.1| putative polyprotein [Oryza sativa Japonica Group]
gi|31430814|gb|AAP52680.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1796
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL+ E V G TS
Sbjct: 669 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTPGNSSTSV 728
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
V +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 729 SFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 788
Query: 209 TLR-------GATTSELKA-IEGDTIQKTLRK 232
+ G + ++++A I DT++K LRK
Sbjct: 789 VYKSLVSPKQGVSLNQIEAEIPVDTVEKNLRK 820
>gi|77554821|gb|ABA97617.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1243
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 394 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 453
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
+ +++Q + A LL + D +LG WL ++ D + T + G
Sbjct: 454 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCSNRTVTLTNEKGET 512
Query: 208 VTLR-------GATTSELKA-IEGDTIQKTLRK 232
V + G + ++++A I DT++K LRK
Sbjct: 513 VVYKSPDSPKQGISLNQIEAEIPVDTVEKNLRK 545
>gi|449462405|ref|XP_004148931.1| PREDICTED: uncharacterized protein LOC101213941 [Cucumis sativus]
Length = 902
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 26/179 (14%)
Query: 41 QKYTFGHKCKK------LFLIEAEEGDEPKEHEKEKDVTQETPAISLHALA-RVQSPQTM 93
+KY+ GH+CK + LI EE D +E + E + ++ I L+ L + +P +
Sbjct: 317 EKYSPGHRCKGREKRELMLLILNEEEDHKREEDAEDEASE---VIELNHLELNMDNPIEL 373
Query: 94 RLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKG 153
RL + ++ S T H L + G V + NG + G CK
Sbjct: 374 RLITGVT---------SKRTKKLKGH-------LSIDLGTRFGVTIGNGNQCEGSGICKR 417
Query: 154 VQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
V+++L+ I A F + L D VLG QWL + G++ + + M F G ++ L+G
Sbjct: 418 VKVKLKELTIVADFLAVELGTVDLVLGMQWLDSTGTMKVHWPSLTMTFWTKGRRIILKG 476
>gi|38347263|emb|CAE05310.2| OSJNBa0056L23.8 [Oryza sativa Japonica Group]
Length = 1472
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I+ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 369 INSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPWMVSTPSNQALSLQRSPSVRIEI 428
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
+G A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 429 KGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 488
Query: 219 KA 220
++
Sbjct: 489 RS 490
>gi|15217260|gb|AAK92604.1|AC078944_15 Putative retroelement [Oryza sativa Japonica Group]
Length = 1571
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
T+L DSG+TH+FL FA G+K E +V + S R V+++++G
Sbjct: 654 TVLFDSGATHSFLSMSFAGNHGMKVEDLRRPLMVSTPSNQALSLQRSPSVRIEIKGVPFL 713
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKA 220
A LL + D +LG WL ++ ++ + DG VT+ ++ L++
Sbjct: 714 ANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESLRS 769
>gi|22138474|gb|AAM93458.1| putative polyprotein [Oryza sativa Japonica Group]
gi|31430677|gb|AAP52558.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1406
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 303 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 362
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 363 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSESL 422
Query: 219 KA 220
++
Sbjct: 423 RS 424
>gi|77552307|gb|ABA95104.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1709
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 747 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVKIEI 806
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 807 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSESL 866
Query: 219 KA 220
++
Sbjct: 867 RS 868
>gi|54291836|gb|AAV32204.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1142
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL+ E V G TS
Sbjct: 168 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLRKEELSTPMRVHTPGNSSTSV 227
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
V +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 228 SFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 287
Query: 209 TLR-------GATTSELKA-IEGDTIQKTLRK 232
+ G + ++++A I DT++K LRK
Sbjct: 288 VYKSLVSPKQGVSLNQIEAEIPVDTVEKNLRK 319
>gi|297724521|ref|NP_001174624.1| Os06g0170800 [Oryza sativa Japonica Group]
gi|215766712|dbj|BAG98940.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676759|dbj|BAH93352.1| Os06g0170800 [Oryza sativa Japonica Group]
Length = 263
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 69/141 (48%), Gaps = 8/141 (5%)
Query: 78 AISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHH-KFAKITGLKSEPGCLLS 136
AISL A+ S T+RLQ SI + IL+DSGS+ +FL +TG+KS LL+
Sbjct: 2 AISLQAIQGTVSAHTLRLQGSIQGFDVLILVDSGSSCSFLSSVVLPHLTGVKS----LLT 57
Query: 137 VV---VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWD 193
V VANG L+ + ++QG Q F LL L+ D +LG WL + +
Sbjct: 58 PVQVKVANGAVLSCTSELPAAKWEVQGHQFSTDFKLLPLDNYDMILGMDWLEKYSPMDIN 117
Query: 194 FDKMEMQFTKDGHQVTLRGAT 214
+ +QF V L+G
Sbjct: 118 WQAKTIQFGLLDKSVELKGVV 138
>gi|110288865|gb|ABB47143.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1020
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 588 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 647
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 648 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 707
Query: 219 KA 220
++
Sbjct: 708 RS 709
>gi|24414261|gb|AAN59764.1| Putative retroelement [Oryza sativa Japonica Group]
gi|108706657|gb|ABF94452.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1021
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 5/156 (3%)
Query: 61 DEPKEHEKEKDVTQETP---AISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFL 117
D P + + E+ + P AIS+ A+ ++ MR+ I + IL+DSGST +FL
Sbjct: 471 DIPDQEQLEQLEEYDNPDLIAISVQAIHGSETVGCMRMLGYIQGKEVLILVDSGSTTSFL 530
Query: 118 HHKFA-KITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCD 176
+ A K+TG+ V VANG L QG F +L L D
Sbjct: 531 SSQIAQKLTGVTPLVAA-TRVKVANGTILNCVASVPNCDWMTQGWVFCTTFKVLDLGSYD 589
Query: 177 AVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
+LG WL + D+ + + T VTL+G
Sbjct: 590 MILGMDWLMDHSPMQVDWIQKTLTITWRQQSVTLQG 625
>gi|77554975|gb|ABA97771.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2174
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 1071 VNSVPATVLFDSGATHSFLSTSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 1130
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 1131 QGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSESL 1190
Query: 219 KA 220
++
Sbjct: 1191 RS 1192
>gi|147861322|emb|CAN83996.1| hypothetical protein VITISV_031193 [Vitis vinifera]
Length = 499
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 22/138 (15%)
Query: 84 LARVQSP----QTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVV 139
LA+++ P +TMR+ + + L +LIDSGSTHNF++ + A++ L P +V V
Sbjct: 61 LAKLEFPKYSARTMRVSAKVGPHELIVLIDSGSTHNFINERIAELLQLPMVPIEPFNVKV 120
Query: 140 ANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGC-DAVLGA-------QWLCTLGSIL 191
ANG+ P +C+ + L I+ F + +++ D + GA ++ LG
Sbjct: 121 ANGD----PLKCQ--ERALNAVTIKDRFLIPTVDDMPDELYGAFEILRHHKFFIKLGKCA 174
Query: 192 WDFDKMEMQFTKDGHQVT 209
FD+ E+++ G+ VT
Sbjct: 175 --FDQQEVEYL--GYVVT 188
>gi|110288660|gb|ABB46832.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1662
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G+K E +V + S R V++++
Sbjct: 640 VNLVPATVLFDSGATHSFLSMSFAGNHGMKVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 699
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
+G A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 700 KGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 759
Query: 219 KA 220
++
Sbjct: 760 RS 761
>gi|62733790|gb|AAX95899.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549663|gb|ABA92460.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1686
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG TH+FL FA G++ E +V + S R V++++
Sbjct: 621 VNSVPATVLFDSGGTHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 680
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
QG A LL + D +LG WL ++ D ++ T +G +V A +SE
Sbjct: 681 QGVPFLANLILLESKDLDVILGMDWLARHKGVI-DCANRKVTLTSNGGRVVTVHALSSE 738
>gi|449475049|ref|XP_004154359.1| PREDICTED: uncharacterized protein LOC101211870, partial [Cucumis
sativus]
Length = 674
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 70/143 (48%), Gaps = 18/143 (12%)
Query: 41 QKYTFGHKCK-------KLFLIEAEEGDEPKE----HEKEKDVTQETPA-------ISLH 82
+KY GHKCK ++F+I A+ +E +E+ + T E + + ++
Sbjct: 90 EKYYSGHKCKAKEIRELQMFVIRADNVEEEIIEEDVYEQRELCTMELKSEIEGVVELCIN 149
Query: 83 ALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANG 142
++ + +P M+++ I + +LID G+THNF+ K + L ++ V+ +G
Sbjct: 150 SVVGLTNPGAMKVRGKIQGREVIVLIDCGATHNFISDKLVLMLKLNTKDTSNYGVIFGSG 209
Query: 143 EKLTSPGRCKGVQLQLQGTQIEA 165
+ G C+ V++ L G +EA
Sbjct: 210 TAIKGRGICEKVEVDLDGRALEA 232
>gi|226407|prf||1510387A retrotransposon del1-46
Length = 1443
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEP-GCLLSVVVANGEKLTSPGRCKGVQL 156
SI + +LID+GSTH+F+ + K+ + +P G +LSV+ G CKG +
Sbjct: 340 SIFSSLCHVLIDTGSTHSFITPRIIKMLEIPVQPLGYILSVISPIGTSTFVNQVCKGCMI 399
Query: 157 QLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDK 196
+ ++ +L LE D +LG WL +L F K
Sbjct: 400 TIGNQELTVDLIILDLEDPDILLGMDWLAAYHVVLDCFSK 439
>gi|77550774|gb|ABA93571.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1383
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S RC V++++
Sbjct: 371 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRCPSVKIEI 430
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
Q A LL + D +LG WL ++ ++ + DG VT+
Sbjct: 431 QKVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTV 482
>gi|22725909|gb|AAN04919.1| Putative polyprotein [Oryza sativa Japonica Group]
gi|31430212|gb|AAP52158.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1719
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 641 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 700
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + + A LL + D +LG WL ++ ++ + G V
Sbjct: 701 QFSPSITIEIQRSPVLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 760
Query: 209 TL-------RGATTSELKA-IEGDTIQKTLRK 232
+G + ++++ I DT++K LRK
Sbjct: 761 VYKSLVSPKKGVSLNQIETEIPVDTVEKNLRK 792
>gi|147765520|emb|CAN60437.1| hypothetical protein VITISV_035177 [Vitis vinifera]
Length = 818
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 132 GCLLSV-VVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSI 190
G LL + V GE G C+GVQL LQG +I L L G D +LG QWL TLG I
Sbjct: 259 GVLLKIGVSVKGE-----GVCRGVQLLLQGVKIVEDVMPLDLGGSDFILGMQWLETLGKI 313
Query: 191 LWDFDKMEMQFTKDGHQVTLRG 212
++ + M F +TL+G
Sbjct: 314 KFNCKTLTMWFKVGESTMTLQG 335
>gi|78708216|gb|ABB47191.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1443
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ E +V ++ S R V+++
Sbjct: 339 PVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSDQALSLQRSPSVRIE 398
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
++G A LL + D +LG WL ++ ++ + DG VT+ ++
Sbjct: 399 IKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSES 458
Query: 218 LKA 220
L++
Sbjct: 459 LRS 461
>gi|32487926|emb|CAE05274.1| OSJNBb0014D23.8 [Oryza sativa Japonica Group]
Length = 1545
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 25/148 (16%)
Query: 83 ALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFA-KITGLKSEPGCLLSVVVAN 141
AL+ +SP + RL+ + + +L+DSGS+H+F+ + + ++ G++ P
Sbjct: 21 ALSGTESPISFRLRGWVQGVEVLMLVDSGSSHSFIDNSLSQQLQGVQQLPKS-------- 72
Query: 142 GEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQF 201
+ ++G ++ F L L D +LG WL LG + D+ F
Sbjct: 73 --------------VSVKGHVFQSEFKFLPLGTYDVILGMDWLMQLGPMNVDWTAKWRMF 118
Query: 202 TKDGHQVTLRG--ATTSELKAIEGDTIQ 227
K G +V L G A T+ +I G+ +Q
Sbjct: 119 QKAGKRVKLLGIQAQTNSCLSITGEQLQ 146
>gi|77556709|gb|ABA99505.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1307
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 345 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSMQRSPSVRIEI 404
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 405 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 464
Query: 219 KA 220
++
Sbjct: 465 RS 466
>gi|62733811|gb|AAX95920.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|62734057|gb|AAX96166.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550628|gb|ABA93425.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 919
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 338 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSLSVRIEI 397
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 398 QGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTVHALSSESL 457
Query: 219 KA 220
++
Sbjct: 458 RS 459
>gi|62734324|gb|AAX96433.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550058|gb|ABA92855.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1636
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 533 VNSVPTTVLFDSGATHSFLSMSFAGNHGMEVEDLIRPLMVSTPSNQALSLQRSPSVRIEI 592
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
Q A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 593 QEVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTVHALSSESL 652
Query: 219 KA 220
++
Sbjct: 653 RS 654
>gi|50300548|gb|AAT73689.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1516
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG++H+F+ +FA + GL + V G + +
Sbjct: 389 APEVVLGTFPVNSYPATVLFDSGASHSFISKRFAGMHGLSVVELKIPMQVHTPGNDMRTA 448
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
C V ++++ + + LL + D +LG WL ++ D + T D G +
Sbjct: 449 HYCPSVTIEIKRSPFLSNLILLESKDLDVILGMDWLTRNKGVI-DCASRTITLTNDKGEK 507
Query: 208 VTLRGATTSE------LKAIEG--DTIQKTLRK 232
+T R + + AIEG +T++K+ RK
Sbjct: 508 ITFRSPVSQKSVASLNQAAIEGQTETVEKSPRK 540
>gi|62733030|gb|AAX95147.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549641|gb|ABA92438.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1535
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ E +V A + R V+++
Sbjct: 367 PVNSVPATVLFDSGATHSFLSMSFAGNHGMEIEDLRRPLMVSAPSNQALLSQRSPSVRIE 426
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
+QG A LL D +LG WL ++ D ++ T + QV A SE
Sbjct: 427 IQGVPFLANLILLESNDLDVILGMDWLARYKGVI-DCTNRKVTLTSNDGQVVTVHALPSE 485
>gi|38347247|emb|CAD39360.2| OSJNBa0059H15.11 [Oryza sativa Japonica Group]
Length = 585
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 328 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPMMVSTPSNQALSLQRSPSVRIEI 387
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
+G A LL + D +LG WL ++ D ++ T +G +V A +SE
Sbjct: 388 KGVPFLANLILLESKDLDVILGMDWLARHKGVI-DCANRKVTLTSNGGRVVTVHALSSE 445
>gi|29788873|gb|AAP03419.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 652
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 69 EKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLK 128
+D +ET ISLHA V+ M + + A L L DSGSTH FL A
Sbjct: 154 SQDEPRETLRISLHAATGVRGSDAMHIMVRLGDADLYALTDSGSTHMFLSQDAATRVDRA 213
Query: 129 SEPGCLLSVVVANGEKLTS--------PGRC 151
+P L+V VANG+K TS P RC
Sbjct: 214 LQPRIGLNVTVANGDKATSGRVLWRAHPRRC 244
>gi|57834025|emb|CAI44621.1| B1168G10.5 [Oryza sativa Japonica Group]
Length = 1456
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG++H+FL FA G++ E +V + S R V++++
Sbjct: 610 VNLVPATVLFDSGASHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 669
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 670 QGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTVHALSSESL 729
Query: 219 KA 220
++
Sbjct: 730 RS 731
>gi|31431236|gb|AAP53044.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1094
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ E +V ++ S R V+++
Sbjct: 369 PVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSDQALSLQRSPSVRIE 428
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
++G A LL + D +LG WL ++ ++ + DG VT+ ++
Sbjct: 429 IKGVPFLANLILLESKDFDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSES 488
Query: 218 LKA 220
L++
Sbjct: 489 LRS 491
>gi|90265088|emb|CAH67760.1| H0124E07.7 [Oryza sativa Indica Group]
Length = 1430
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 369 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLHRSPSVRIEI 428
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 429 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKITLTSNDGRVVTVHALSSEFL 488
Query: 219 KA 220
++
Sbjct: 489 RS 490
>gi|90265167|emb|CAH67735.1| H0522A01.6 [Oryza sativa Indica Group]
gi|116310748|emb|CAH67543.1| H0425E08.11 [Oryza sativa Indica Group]
Length = 1475
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ E +V + S R V+++
Sbjct: 371 PVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPAVRIE 430
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
++G A LL + D +LG WL ++ ++ + DG VT++ ++
Sbjct: 431 IKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVQALSSES 490
Query: 218 LK 219
L+
Sbjct: 491 LR 492
>gi|449445212|ref|XP_004140367.1| PREDICTED: uncharacterized protein LOC101210426 [Cucumis sativus]
Length = 497
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 47/106 (44%)
Query: 124 ITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQW 183
I GL + V + +G L G CK V+++L +I A F + L D VLG QW
Sbjct: 187 ILGLHQKEKTKFGVTIGDGTALEGKGVCKRVEVKLPELKIVADFLAIKLGRIDVVLGMQW 246
Query: 184 LCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKAIEGDTIQKT 229
L T G + + M M F QV L+G + TI KT
Sbjct: 247 LSTTGFMGVHWPTMTMTFMAGTTQVILKGDPSITKTECSLKTISKT 292
>gi|4680179|gb|AAD27547.1|AF111709_1 polyprotein [Oryza sativa Indica Group]
Length = 1521
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL+ E V G TS
Sbjct: 394 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKEELRTPMRVHTPGNSSTSV 453
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
V +++Q + A LL + D +LG WL ++ D + T + +
Sbjct: 454 SFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGET 512
Query: 209 TL--------RGATTSELKA-IEGDTIQKTLRK 232
+ +GA+ ++++A I DT++K LRK
Sbjct: 513 VVHKSLVSPKQGASLNQIEAEIPVDTMEKNLRK 545
>gi|77554505|gb|ABA97301.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1447
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 369 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 428
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
+G A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 429 KGVPFLANLILLEPKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 488
Query: 219 KA 220
++
Sbjct: 489 RS 490
>gi|18657020|gb|AAL78107.1|AC093568_17 Putative polyprotein [Oryza sativa]
gi|21321760|gb|AAM47295.1|AC122146_14 Putative polyprotein [Oryza sativa Japonica Group]
gi|31430576|gb|AAP52470.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1819
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 692 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 751
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL +G D +LG WL ++ D + T + +
Sbjct: 752 QFSPSITIEIQRSPFLANLILLDSKGLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGET 810
Query: 209 TLRGATTSELKA---------IEGDTIQKTLRK 232
+ + S K I DT++K RK
Sbjct: 811 VVYKSLVSPRKGVSLNQIETEIPVDTVEKNSRK 843
>gi|357438009|ref|XP_003589280.1| B3 domain-containing protein REM16 [Medicago truncatula]
gi|355478328|gb|AES59531.1| B3 domain-containing protein REM16 [Medicago truncatula]
Length = 423
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 14/100 (14%)
Query: 91 QTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGR 150
QT++L+ + + +L+DSG+THNF+ K L + +AN K S G
Sbjct: 290 QTIKLRGRVEGVPVLLLVDSGATHNFISKK--------------LVIELANMYKTRSTGE 335
Query: 151 CKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSI 190
K V +++ ++E + L+ D VLG WL ++G +
Sbjct: 336 RKQVMVEMGKLKLEIGALVFDLDKVDIVLGTTWLNSIGEL 375
>gi|38567897|emb|CAE03652.2| OSJNBa0060N03.17 [Oryza sativa Japonica Group]
Length = 1634
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL F G++ E +V + S R V++++
Sbjct: 607 VNSVPATVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 666
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ +K + DG VT+ ++ L
Sbjct: 667 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANKKVTLTSYDGRVVTVHALSSESL 726
Query: 219 KA 220
++
Sbjct: 727 RS 728
>gi|77555389|gb|ABA98185.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1699
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 596 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 655
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 656 QGVPFLANLILLESKDLDVILGMDWLAKHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 715
Query: 219 KA 220
+
Sbjct: 716 RP 717
>gi|78708045|gb|ABB47020.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 989
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ E +V + S R V+++
Sbjct: 163 PVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 222
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
++G A LL + D +LG WL ++ ++ + DG VT+ ++
Sbjct: 223 IKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRRVTLTSNDGRVVTVHALSSES 282
Query: 218 LKA 220
L++
Sbjct: 283 LRS 285
>gi|55168164|gb|AAV44031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|55733814|gb|AAV59321.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1505
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG++H+F+ +FA GL + V G + +
Sbjct: 378 APEVVLGTFPVNSYPATVLFDSGASHSFISKRFAGTHGLSVVELKIPMQVHTPGNDMRTA 437
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
C V ++++ + + LL + D +LG WL ++ D + T D G +
Sbjct: 438 HYCPSVTIEIKRSPFLSNLILLESKDLDVILGMDWLTRNKGVI-DCASRTITLTNDKGEK 496
Query: 208 VTLRGA----TTSELK--AIEG--DTIQKTLRK 232
+T R + + LK AIEG +T++K+ RK
Sbjct: 497 ITFRSPASQKSVASLKQAAIEGQTETVEKSSRK 529
>gi|77552331|gb|ABA95128.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1309
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Query: 78 AISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSV 137
A + A+ +P+ + ++ T+L DSG++H+F+ +FA GL +
Sbjct: 261 ANHVSAMEAQAAPEVVLGTFPVNSYPATVLFDSGASHSFISKRFAGTHGLSVVELKIPMQ 320
Query: 138 VVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKM 197
V G + + C V ++++ + + LL + D VLG WL ++ D
Sbjct: 321 VHTPGNDMRTAHYCPSVTIEIRRSPFLSNLILLESKDLDVVLGMDWLTRNKGVI-DCASR 379
Query: 198 EMQFTKD-GHQVTLRGATTSE------LKAIEG--DTIQKTLRK 232
+ T D G ++T R + + AIEG +T++K+ RK
Sbjct: 380 TITLTNDKGEKITFRSPASQKSVASLNQAAIEGQTETVEKSPRK 423
>gi|50511449|gb|AAT77372.1| putative polyprotein [Oryza sativa Japonica Group]
gi|51854392|gb|AAU10772.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1501
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG++H+F+ +FA GL + V G + +
Sbjct: 374 APEVVLGTFPVNSYPATVLFDSGASHSFISKRFAGTHGLSVVELKIPMKVHTPGNDMRTA 433
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
C V ++++ + + LL + D +LG WL ++ D + T D G +
Sbjct: 434 HYCPSVTIEIKRSPFLSNLILLESKDLDVILGMDWLTRNKGVI-DCASRTITLTNDKGEK 492
Query: 208 VTLRGATTSE------LKAIEG--DTIQKTLRK 232
VT R + + AIEG +T++K+ RK
Sbjct: 493 VTFRSPASQKSVASLNQAAIEGQTETVEKSPRK 525
>gi|50878348|gb|AAT85123.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1495
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG++H+F+ +FA+ GL + V G + +
Sbjct: 389 APEVVLGTFPVNSYPATVLFDSGASHSFISKRFARTHGLSVVELKIPMQVHTPGNDMRTA 448
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
C V ++++ + + LL + D +LG WL ++ D + T D G +
Sbjct: 449 HYCPSVTIEIKRSPFLSNLILLESKDLDVILGMNWLTRNKGVI-DCASRTITLTNDKGEK 507
Query: 208 VTLRGATTSE------LKAIEG--DTIQKTLRK 232
+T R + + AIEG +T++K+ +K
Sbjct: 508 ITFRSPASQKSVASLNQAAIEGQTETVEKSPKK 540
>gi|108708778|gb|ABF96573.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1481
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 19/153 (12%)
Query: 13 LARAGHLTDKQEAE--CFISGLKDGLRTDVQKYTFGHKCKKLFLIEAEEGDEPKEHE--- 67
L +A L D + A+ CF G KYT H+C I+A + +E +
Sbjct: 767 LWKAKQLKDYRRAQGLCFKCG---------DKYTPEHRCAVGGQIKAMKLEEVLTDDILD 817
Query: 68 ----KEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAK 123
E+ +E ISL+A P + L++ + L +L+DSGS+H+F+ + FA
Sbjct: 818 AVIAAEQSDDEEDCHISLNAFTGAHLPTAIHLRALVHSKVLLLLVDSGSSHSFIDYNFAH 877
Query: 124 ITGLKSEPGCLLSVVVANGEKLT-SPGRCKGVQ 155
+ GL +P V VANG+ L P R +Q
Sbjct: 878 MLGLPLKPIPSTLVKVANGDCLPCQPYRYSPLQ 910
>gi|46485886|gb|AAS98511.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1678
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 575 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 634
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 635 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSEFL 694
Query: 219 KA 220
++
Sbjct: 695 RS 696
>gi|110288892|gb|ABG66013.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1683
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 605 VNLVPATMLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 664
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 665 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 724
Query: 219 KA 220
++
Sbjct: 725 RS 726
>gi|116308998|emb|CAH66117.1| OSIGBa0146N20.2 [Oryza sativa Indica Group]
Length = 1521
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 394 APKVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 453
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL +G D +LG WL ++ D + T + +
Sbjct: 454 QFSPSITIEIQRSPFLANLILLDSKGLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGET 512
Query: 209 TLRGATTSELKA---------IEGDTIQKTLRK 232
+ + S K I DT++K RK
Sbjct: 513 VVYKSLVSPRKGVSLNQIETEIPVDTVEKNSRK 545
>gi|110288617|gb|AAP52162.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1730
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 729 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPYVRIEI 788
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 789 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSEFL 848
Query: 219 KA 220
++
Sbjct: 849 RS 850
>gi|16905211|gb|AAL31081.1|AC091749_10 putative polyprotein [Oryza sativa Japonica Group]
gi|22655733|gb|AAN04150.1| Putative polyprotein [Oryza sativa Japonica Group]
Length = 1416
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 338 VNLVPATMLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 397
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 398 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 457
Query: 219 KA 220
++
Sbjct: 458 RS 459
>gi|108862475|gb|ABA97082.2| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 637
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ TIL+DSG+TH+F+ KF ++ GL+ E TS V +++
Sbjct: 439 VNSIPATILLDSGATHSFISKKFVRVHGLRKEELSTPMRFHTPWNSSTSVSYNPSVVIEI 498
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATT 215
Q +Q A LL + D +LG WL I+ ++M + G + + +
Sbjct: 499 QISQFLANLILLESKDLDVILGKDWLTKFKGIIDCANRMVTLVNEKGETIVYKSPAS 555
>gi|22725913|gb|AAN04923.1| Putative retroelement [Oryza sativa Japonica Group]
Length = 1729
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 729 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPYVRIEI 788
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 789 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSEFL 848
Query: 219 KA 220
++
Sbjct: 849 RS 850
>gi|38344348|emb|CAD40170.2| OSJNBa0061A09.9 [Oryza sativa Japonica Group]
Length = 1653
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G +S
Sbjct: 592 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGVHGLIREELSTPMRVHTPGNSSSSV 651
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++QG+ A LL + D +LG WL ++ ++ + G V
Sbjct: 652 QFSPSITIEIQGSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 711
Query: 209 TL-------RGATTSELKA-IEGDTIQKTLRK 232
+GA+ ++++ I DT +K LRK
Sbjct: 712 VYKSLVSPKKGASLNQIETEIPVDTEEKNLRK 743
>gi|34015262|gb|AAQ56454.1| putative polyprotein [Oryza sativa Japonica Group]
gi|34015280|gb|AAQ56471.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1735
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ E +V + S R V+++
Sbjct: 631 PVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRHPLMVSTPSNQALSLQRSPSVRIE 690
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
++G A LL + D +LG WL ++ ++ + DG VT+ ++
Sbjct: 691 IKGVPFVANLILLESKDLDVILGMDWLARHRGVIDCANRKVTLTSNDGRVVTVHALSSES 750
Query: 218 LKA 220
L++
Sbjct: 751 LRS 753
>gi|20177617|gb|AAM14672.1|AC097446_1 Putative polyprotein [Oryza sativa Japonica Group]
Length = 1342
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 342 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPYVRIEI 401
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 402 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSEFL 461
Query: 219 KA 220
++
Sbjct: 462 RS 463
>gi|77554007|gb|ABA96803.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1500
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 394 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 453
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ D + T + +
Sbjct: 454 QFSPSITIEIQMSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCASRTVTLTNEKGET 512
Query: 209 TLRGATTSELKA---------IEGDTIQKTLRK 232
+ + S K I DT++K LRK
Sbjct: 513 VVYKSLVSPRKGVSLNQIETEIRVDTVEKNLRK 545
>gi|38346366|emb|CAE04203.2| OSJNBa0011E07.12 [Oryza sativa Japonica Group]
Length = 1473
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V ++ S R V++++
Sbjct: 370 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSDQTLSLQRSPSVRIEI 429
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
+G A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 430 KGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRRVTLTSNDGRVVTVHALSSEFL 489
Query: 219 KA 220
++
Sbjct: 490 RS 491
>gi|108862750|gb|ABA98741.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1678
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 601 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 660
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++
Sbjct: 661 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSESF 720
Query: 219 KA 220
++
Sbjct: 721 RS 722
>gi|18997227|gb|AAL83344.1|AC074282_11 Putative polyprotein [Oryza sativa Japonica Group]
gi|20042905|gb|AAM08733.1|AC116601_26 Putative polyprotein [Oryza sativa Japonica Group]
gi|31429938|gb|AAP51922.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1443
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ E +V + S R V+++
Sbjct: 339 PVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRHPLMVSTPSNQALSLQRSPSVRIE 398
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
++G A LL + D +LG WL ++ ++ + DG VT+ ++
Sbjct: 399 IKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSES 458
Query: 218 LKA 220
L++
Sbjct: 459 LRS 461
>gi|77555076|gb|ABA97872.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 923
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ E +V + S R V+++
Sbjct: 188 PVNSVPATVLFDSGATHSFLSMSFAGNHGMEIEDLRHPLMVSTLSNQALSSQRSPSVRIE 247
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
+QG A LL + D +LG WL ++ ++ + DG VT+
Sbjct: 248 IQGVPFLANLILLESKHLDVILGMDWLARYKGVIDCANRKVTLTSNDGQVVTVHALPFEP 307
Query: 218 LKA 220
L++
Sbjct: 308 LRS 310
>gi|77554740|gb|ABA97536.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1516
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG++H+F+ +FA GL + V G + +
Sbjct: 389 APEVVLGTFPVNSYPATVLFDSGASHSFISKRFAGTHGLSVVELKIPMQVHTPGNDMRTA 448
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
C V ++++ + + LL + D +LG WL ++ D + T D G +
Sbjct: 449 HYCPSVTIEIKRSPFLSNLILLESKDLDVILGMDWLTRNKGVI-DCASRTITLTNDKGEK 507
Query: 208 VTLRGATTSE------LKAIEG--DTIQKTLRK 232
+T R + + AIEG +T++K+ RK
Sbjct: 508 ITFRSPASQKSVASLNQAAIEGQTETVEKSPRK 540
>gi|116309091|emb|CAH66198.1| OSIGBa0148D14.4 [Oryza sativa Indica Group]
Length = 1516
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG++H+F+ +FA GL + V G + +
Sbjct: 389 APEVVLGTFPVNSYPATVLFDSGASHSFISKRFAGTHGLSVVELKIPMQVHTPGNDMRTA 448
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
C V ++++ + + LL + D +LG WL ++ D + T D G +
Sbjct: 449 HYCPSVTIEIKRSPFLSNLILLESKDLDVILGMDWLTRNKGVI-DCASRTITLTNDKGEK 507
Query: 208 VTLRGATTSE------LKAIEG--DTIQKTLRK 232
+T R + + AIEG +T++K+ RK
Sbjct: 508 ITFRSPASQKSVASLNQAAIEGQTETVEKSPRK 540
>gi|53981942|gb|AAV25060.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53982137|gb|AAV25233.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1765
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 650 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 709
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ D + T + +
Sbjct: 710 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCASRTVTLTNEKGET 768
Query: 209 TLRGATTSELKA---------IEGDTIQKTLRK 232
+ + S K I DT++K LRK
Sbjct: 769 VVYKSLVSPRKGVSLNQIETEIPVDTVEKNLRK 801
>gi|21741612|emb|CAD40943.1| OSJNBa0027G07.15 [Oryza sativa Japonica Group]
Length = 999
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 141 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPNNQALSLQRSPSVRIEI 200
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
+G A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 201 KGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 260
Query: 219 KA 220
++
Sbjct: 261 RS 262
>gi|15217216|gb|AAK92560.1|AC051624_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431025|gb|AAP52863.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1714
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 587 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 646
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ D + T + +
Sbjct: 647 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCASRTVTLTNEKGET 705
Query: 209 TLRGATTSELKA---------IEGDTIQKTLRK 232
+ + S K I DT++K LRK
Sbjct: 706 VVYKSLVSPKKGVSLNQIETEIPVDTVEKNLRK 738
>gi|77551642|gb|ABA94439.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1267
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL+ E V G TS
Sbjct: 394 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTPGNSSTSV 453
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
V +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 454 SFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 513
Query: 209 TLR-------GATTSELKA-IEGDTIQKTLRK 232
+ G + ++++A I DT++K L+K
Sbjct: 514 VYKSPDSPKQGVSLNQIEAEIPVDTVEKNLKK 545
>gi|20042987|gb|AAM08795.1|AC090486_5 Putative retroelement [Oryza sativa Japonica Group]
gi|31431148|gb|AAP52970.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1785
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 658 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 717
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ D + T + +
Sbjct: 718 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCASRTVTLTNEKGET 776
Query: 209 TLRGATTSELKA---------IEGDTIQKTLRK 232
+ + S K I DT++K LRK
Sbjct: 777 VVYKSLVSPKKGVSLNQIETEIPVDTVEKNLRK 809
>gi|38344008|emb|CAE03176.2| OSJNBa0070O11.7 [Oryza sativa Japonica Group]
Length = 1501
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG++H+F+ +FA GL + V G + +
Sbjct: 374 APEVVLGTFPVNSYPATVLFDSGASHSFISKRFAGTHGLSIVELKIPMQVHTPGNDMRTA 433
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
C V ++++ + + LL + D +LG WL ++ D + T D G +
Sbjct: 434 HYCPSVTIEIKRSPFLSNLILLESKDLDVILGMDWLTRNKGVI-DCASRTITLTNDKGEK 492
Query: 208 VTLRGATTSEL------KAIEG--DTIQKTLRK 232
+T R + + AIEG +T++K+ RK
Sbjct: 493 ITFRSPASQKPVASLNQAAIEGQTETVEKSPRK 525
>gi|38347555|emb|CAD39386.2| OSJNBb0016B03.11 [Oryza sativa Japonica Group]
Length = 1374
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL + ++ L+ L V + + L S R V+++
Sbjct: 371 PVNSVPATVLFDSGATHSFLLNHGMEVEDLRRP----LMVSTPSNQAL-SLQRSPSVRIE 425
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
+QG A LL + D +LG WL ++ ++ +KDG VT+ ++
Sbjct: 426 IQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLISKDGRVVTVHAMSSES 485
Query: 218 LKA 220
L++
Sbjct: 486 LRS 488
>gi|15217244|gb|AAK92588.1|AC074354_22 Putative retroelement [Oryza sativa Japonica Group]
gi|19881702|gb|AAM01103.1|AC098682_7 Putative retroelement [Oryza sativa Japonica Group]
gi|31431123|gb|AAP52945.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1777
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 650 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 709
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ D + T + +
Sbjct: 710 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCASRTVTLTNEKGET 768
Query: 209 TLRGATTSELKA---------IEGDTIQKTLRK 232
+ + S K I DT++K LRK
Sbjct: 769 VVYKSLVSPKKGVSLNQIETEIPVDTVEKNLRK 801
>gi|53981934|gb|AAV25052.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1777
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 650 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 709
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ D + T + +
Sbjct: 710 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCASRTVTLTNEKGET 768
Query: 209 TLRGATTSELKA---------IEGDTIQKTLRK 232
+ + S K I DT++K LRK
Sbjct: 769 VVYKSLVSPKKGVSLNQIETEIPVDTVEKNLRK 801
>gi|53981935|gb|AAV25053.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1777
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 650 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 709
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ D + T + +
Sbjct: 710 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCASRTVTLTNEKGET 768
Query: 209 TLRGATTSELKA---------IEGDTIQKTLRK 232
+ + S K I DT++K LRK
Sbjct: 769 VVYKSLVSPKKGVSLNQIETEIPVDTVEKNLRK 801
>gi|62734341|gb|AAX96450.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549773|gb|ABA92570.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1723
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL+ E V G TS
Sbjct: 596 APEVVLGTFPVNSIPTTVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTPGNSSTSV 655
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
V +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 656 SFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 715
Query: 209 TLR-------GATTSELKA-IEGDTIQKTLRK 232
+ G + ++++A I DT++K L+K
Sbjct: 716 VYKSPDSPKQGVSLNQIEAEIPVDTVEKNLKK 747
>gi|110288674|gb|ABB46871.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1446
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ +L DSG+TH+F+ KF + GL E V G TS
Sbjct: 394 APEVVLGTFPVNSIPAIVLFDSGATHSFISKKFVGMHGLIREKLSTPMRVHTPGNSSTSV 453
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 454 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGKTV 513
Query: 209 TLR-------GATTSELKA-IEGDTIQKTLRK 232
+ G + ++++A I DT++K LRK
Sbjct: 514 VYKSPDSPKQGVSLNQIEAEIPVDTVEKNLRK 545
>gi|77555354|gb|ABA98150.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1480
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ +L DSG++H+F+ F KI G K++ + +V + G + + C V L+
Sbjct: 476 SVNSVPAIVLFDSGASHSFISQAFVKINGWKTQNLRVPMIVHSPGRNIRATQICPEVNLR 535
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ A +L + D +LG WL
Sbjct: 536 IEEVDFLAKPIVLDSQSLDIILGMDWLA 563
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 2 VSEYQTRFERLLARAGHL--TDKQEAECFISGLKDGLRTDVQKY---TFGHKCKKLFLIE 56
V+EY + F +L A TDK++ F+ G+ G+R + + TF H K L+E
Sbjct: 245 VNEYLSMFNKLARYAPEEVDTDKKKIRKFLKGIAVGMRLQLLAHDFPTFQHMINKALLLE 304
Query: 57 AEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKAS 103
+ +E++K K Q P+ + R + Q M+ S+++A+
Sbjct: 305 DARKEATEEYKKRKSNHQGNPS---RGVPRPRYGQPMQYHQSVTQAN 348
>gi|38344420|emb|CAE02386.2| OSJNBb0080H08.12 [Oryza sativa Japonica Group]
Length = 1666
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 624 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 683
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
+G A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 684 KGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSESL 743
Query: 219 KA 220
++
Sbjct: 744 RS 745
>gi|62733086|gb|AAX95203.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 1566
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 701 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 760
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ D + T + +
Sbjct: 761 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGET 819
Query: 209 TLRGATTSELKA---------IEGDTIQKTLRK 232
+ + S K I DT++K LRK
Sbjct: 820 VVYKSLVSPKKGVSLNQIETEIPVDTVEKNLRK 852
>gi|23266289|gb|AAN16328.1| putative polyprotein [Oryza sativa Japonica Group]
gi|31430803|gb|AAP52669.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1263
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
T+L DSG+TH+FL F G++ E +V + S R V++++QG
Sbjct: 616 TVLFDSGATHSFLSMSFGGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 675
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKA 220
A LL + D +LG WL ++ ++ + DG VT+ ++ L++
Sbjct: 676 ANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESLRS 731
>gi|62734491|gb|AAX96600.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 1530
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 471 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 530
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
Q A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 531 QEVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTVHALSSESL 590
Query: 219 KA 220
++
Sbjct: 591 RS 592
>gi|58533058|emb|CAI44662.1| OSJNBa0061C06.18 [Oryza sativa Japonica Group]
Length = 1522
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 629 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 688
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + + +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 689 QGVPFLANLILLESKDLNVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSEFL 748
Query: 219 KA 220
++
Sbjct: 749 RS 750
>gi|108864175|gb|ABG22421.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1572
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 701 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 760
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ D + T + +
Sbjct: 761 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGET 819
Query: 209 TLRGATTSELKA---------IEGDTIQKTLRK 232
+ + S K I DT++K LRK
Sbjct: 820 VVYKSLVSPKKGVSLNQIETEIPVDTVEKNLRK 852
>gi|50878352|gb|AAT85127.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1524
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 397 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 456
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG+ A LL + D +LG WL
Sbjct: 457 HYCPSVTVEIQGSIFPANLILLESKDLDVILGMDWL 492
>gi|38346696|emb|CAE02181.2| OSJNBa0080E14.12 [Oryza sativa Japonica Group]
Length = 1476
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P + + ++ T+L SG+TH+FL FA G++ E +V + S
Sbjct: 363 APDVILCKFLVNLVPATVLFASGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSL 422
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
R V++++QG A LL + D +LG WL ++ ++ + DG V
Sbjct: 423 QRSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVV 482
Query: 209 TLRGATTSELKA 220
T+ ++ L++
Sbjct: 483 TIHALSSESLRS 494
>gi|13129465|gb|AAK13123.1|AC080019_15 Similar to Transposon MAGGYgagandpolgenehomologues [Oryza sativa
Japonica Group]
Length = 2157
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DS +TH+FL FA G++ E +V + S R V+++
Sbjct: 833 PVNSVPATVLFDSSATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 892
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
+QG A LL + D +LG WL ++ ++ + DG VT+ ++
Sbjct: 893 IQGVPFLANLILLESKDLDVILGMDWLAKHKGVIDCANRKVTLISNDGRVVTVHALSSEF 952
Query: 218 LKA 220
L++
Sbjct: 953 LRS 955
>gi|110289020|gb|ABB47439.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1326
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DS +TH+FL FA G++ E +V + S R V+++
Sbjct: 369 PVNSVPATVLFDSSATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 428
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
+QG A LL + D +LG WL ++ ++ + DG VT+ ++
Sbjct: 429 IQGVPFLANLILLESKDLDVILGMDWLAKHKGVIDCANRKVTLISNDGRVVTVHALSSEF 488
Query: 218 LKA 220
L++
Sbjct: 489 LRS 491
>gi|19881618|gb|AAM01019.1|AC090488_19 Putative retroelement [Oryza sativa Japonica Group]
Length = 1475
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ +L DSG+TH+F+ KF + GL E V G TS
Sbjct: 394 APEVVLGTFPVNSIPAIVLFDSGATHSFISKKFVGMHGLIREKLSTPMRVHTPGNSSTSV 453
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 454 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGKTV 513
Query: 209 TLR-------GATTSELKA-IEGDTIQKTLRK 232
+ G + ++++A I DT++K LRK
Sbjct: 514 VYKSPDSPKQGVSLNQIEAEIPVDTVEKNLRK 545
>gi|108864417|gb|ABA93974.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1343
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 397 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 456
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG+ A LL + D +LG WL
Sbjct: 457 HYCPSVTVEIQGSIFPANLILLESKDLDVILGMDWL 492
>gi|48843822|gb|AAT47081.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1524
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 397 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 456
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG+ A LL + D +LG WL
Sbjct: 457 HYCPSVTVEIQGSIFPANLILLESKDLDVILGMDWL 492
>gi|77552427|gb|ABA95224.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1570
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 650 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 709
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ D + T + +
Sbjct: 710 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCASRTVTLTNEKGET 768
Query: 209 TLRGATTSELKA---------IEGDTIQKTLRK 232
+ + S K I DT++K LRK
Sbjct: 769 VVYKSLVSPKKGVSLNQIETEIPVDTVEKNLRK 801
>gi|18657010|gb|AAL78097.1|AC093568_7 Putative polyprotein [Oryza sativa]
gi|31430586|gb|AAP52480.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1473
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 370 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 429
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
+G A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 430 KGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSESL 489
Query: 219 KA 220
++
Sbjct: 490 RS 491
>gi|90265159|emb|CAH67785.1| H0201G08.12 [Oryza sativa Indica Group]
Length = 861
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG++H+F+ +FA GL + V G + +
Sbjct: 138 APKVVLGTFPVNSYPATVLFDSGASHSFISKRFAGTHGLSVVELKIPMQVHTPGNDMRTA 197
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
C V ++++ + + LL + D +LG WL ++ D + T D G +
Sbjct: 198 HYCPSVTIEIKRSPFLSNLILLESKDLDVILGMDWLTRNKGVI-DCASRTITLTNDKGEK 256
Query: 208 VTLRGATTSE------LKAIEG--DTIQKTLRK 232
+T R + + AIEG +T++K+ RK
Sbjct: 257 ITFRSPASQKSVASLNQAAIEGQTETVEKSPRK 289
>gi|116309775|emb|CAH66816.1| OSIGBa0093K19.3 [Oryza sativa Indica Group]
Length = 575
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 141 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 200
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
+G A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 201 KGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 260
Query: 219 KA 220
++
Sbjct: 261 RS 262
>gi|62733279|gb|AAX95396.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
[Oryza sativa Japonica Group]
gi|77550170|gb|ABA92967.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1569
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 510 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 569
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
Q A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 570 QEVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTVHALSSESL 629
Query: 219 KA 220
++
Sbjct: 630 RS 631
>gi|39545597|emb|CAE02841.3| OSJNBa0014F04.7 [Oryza sativa Japonica Group]
Length = 1625
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+F+ FA G++ E +V + S R V++++
Sbjct: 680 VNSVPATVLFDSGATHSFVSMSFAGNDGMEVEDLRRHLMVSTPSNQALSLQRSPFVRIEI 739
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 740 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 799
Query: 219 KA 220
++
Sbjct: 800 RS 801
>gi|110289210|gb|ABG66123.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1291
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL+ + V G TS
Sbjct: 377 APEVVLGTFPVNSVPATVLFDSGATHSFISKKFVGMYGLRKKELSTPMKVHTPGNSSTSV 436
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
V +++Q + A F LL + D +LG WL ++ D+ + T + +
Sbjct: 437 SYSPSVLIEIQRSPFLANFILLESKDLDVILGMDWLTKFKGVI-DYANHTVTLTNEKGET 495
Query: 209 TLRGATTSELKAIEGDTIQ 227
+ ++ S + I + I+
Sbjct: 496 VVYKSSVSPKQGISLNQIK 514
>gi|77555413|gb|ABA98209.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 911
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 2/130 (1%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ M ++ T+L DSG++++F+ KFA GL + V G+ + +
Sbjct: 238 APEVMLGTFPVNSHPATVLFDSGASYSFISKKFAGTHGLSVVELKIPMRVHTPGDDMNTA 297
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
C + ++++ +Q + LL + D +LG WL ++ D+ + T D G +
Sbjct: 298 HYCPSMSIEIKRSQFLSNLILLESKDLDVILGMDWLTRHKGVI-DYASRTITLTNDKGEK 356
Query: 208 VTLRGATTSE 217
+T + E
Sbjct: 357 ITFLSPVSQE 366
>gi|255563340|ref|XP_002522673.1| conserved hypothetical protein [Ricinus communis]
gi|223538149|gb|EEF39760.1| conserved hypothetical protein [Ricinus communis]
Length = 162
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 2 VSEYQTRFERL----LARAGHLTDKQEAECFISGLKDGLRTDVQKYTFGHKCKKLFLIEA 57
V EYQ + + L + L + FISGL LR V+ + + ++E
Sbjct: 46 VEEYQEKLKDLKSFMMKYHAWLDESYYVSSFISGLSKELRPMVKIFKLSDLHQAYEVVEM 105
Query: 58 EEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNF 116
E E +EK V ISLHA+ S T++++ ++ + ILIDSGSTH+F
Sbjct: 106 ERA----EFNEEKIVKDGNVEISLHAIKGSGSMNTLKIKGMVNGKDILILIDSGSTHSF 160
>gi|77552225|gb|ABA95022.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1473
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
T+L DSG+TH+FL FA G++ E +V + S R V+++++G
Sbjct: 376 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIKGVPFL 435
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKA 220
A LL + D +LG WL ++ ++ + DG VT+ ++ L++
Sbjct: 436 ANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGQVVTVHALSSESLRS 491
>gi|19225021|gb|AAL86497.1|AC099040_1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1722
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG TH+FL FA G++ E +V + S R V++++
Sbjct: 619 VNSVPTTVLFDSGVTHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 678
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
+G A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 679 KGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 738
Query: 219 KA 220
++
Sbjct: 739 RS 740
>gi|110288811|gb|AAP52698.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1713
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG TH+FL FA G++ E +V + S R V++++
Sbjct: 610 VNSVPTTVLFDSGVTHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 669
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
+G A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 670 KGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 729
Query: 219 KA 220
++
Sbjct: 730 RS 731
>gi|22758322|gb|AAN05526.1| polyprotein [Oryza sativa Japonica Group]
Length = 1471
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL+ + V G TS
Sbjct: 557 APEVVLGTFPVNSVPATVLFDSGATHSFISKKFVGMYGLRKKELSTPMKVHTPGNSSTSV 616
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
V +++Q + A F LL + D +LG WL ++ D+ + T + +
Sbjct: 617 SYSPSVLIEIQRSPFLANFILLESKDLDVILGMDWLTKFKGVI-DYANHTVTLTNEKGET 675
Query: 209 TLRGATTSELKAIEGDTIQ 227
+ ++ S + I + I+
Sbjct: 676 VVYKSSVSPKQGISLNQIK 694
>gi|38343985|emb|CAD40451.2| OSJNBa0041M21.9 [Oryza sativa Japonica Group]
gi|38343993|emb|CAD40358.2| OSJNBa0093P23.4 [Oryza sativa Japonica Group]
Length = 1543
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL F G++ E +V + S R V++++
Sbjct: 444 VNSVPATVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 503
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ D ++ T + QV A +SE
Sbjct: 504 QGIPFLANLILLESKDLDVILGMDWLARHKGVI-DCANRKVTLTSNDGQVVTVHALSSEF 562
>gi|53981941|gb|AAV25059.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53982136|gb|AAV25232.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1777
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 650 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFLGMHGLIREELSTPMRVHTPGNSSTSV 709
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ D + T + +
Sbjct: 710 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCASRTVTLTNEKGET 768
Query: 209 TLRGATTSELKA---------IEGDTIQKTLRK 232
+ + S K I DT++K LRK
Sbjct: 769 VVYKSLVSPRKGVSLNQIETEIPVDTVEKNLRK 801
>gi|116308971|emb|CAH66095.1| OSIGBa0114I04.2 [Oryza sativa Indica Group]
Length = 1361
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ E +V + S R V+++
Sbjct: 369 PVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 428
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
+QG A LL + D +LG WL ++ ++ + DG VT+
Sbjct: 429 IQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTV 481
>gi|255571683|ref|XP_002526785.1| conserved hypothetical protein [Ricinus communis]
gi|223533861|gb|EEF35591.1| conserved hypothetical protein [Ricinus communis]
Length = 102
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Query: 41 QKYTFGHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSIS 100
+K+ H+CKKLF +E +E + E PAISLHA+ +Q+ QTM+++ I+
Sbjct: 15 EKFEIRHRCKKLFWLEV--------LAEEDEPDDEEPAISLHAIFDIQTTQTMQVEGIIN 66
Query: 101 KASLTILIDSGSTHNFLH 118
L +LIDSGST F++
Sbjct: 67 GFPLLVLIDSGSTPRFVN 84
>gi|147769575|emb|CAN76938.1| hypothetical protein VITISV_025425 [Vitis vinifera]
Length = 446
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQ 41
V EYQ++FE+LL+R G L Q+ CFI GL + +R DVQ
Sbjct: 248 VREYQSQFEKLLSRVGKLNQSQQVACFIGGLNEDVRIDVQ 287
>gi|116309169|emb|CAH66267.1| OSIGBa0136B09.3 [Oryza sativa Indica Group]
Length = 1469
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL F G++ E +V + S R V++++
Sbjct: 370 VNSVPATVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 429
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ D ++ T + QV A +SE
Sbjct: 430 QGIPFLANLILLESKDLDVILGMDWLARHKGVI-DCANRKVTLTSNDGQVVTVHALSSEF 488
>gi|34015342|gb|AAQ56531.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1289
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ E +V + S R V+++
Sbjct: 369 PVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRHPLMVSTPRNQALSLQRSPSVRIE 428
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
++G A LL + D +LG WL ++ ++ + DG VT+ ++
Sbjct: 429 IKGVPFLANLILLESKDLDVILGMDWLARHRGVIDCANRKVTLTSNDGRVVTVHALSSES 488
Query: 218 LKA 220
L++
Sbjct: 489 LRS 491
>gi|38344376|emb|CAD41428.2| OSJNBb0032E06.10 [Oryza sativa Japonica Group]
Length = 2120
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + G E V G TS
Sbjct: 634 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGFIREELSTPMRVHTPGNSSTSV 693
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 694 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 753
Query: 209 TLR-------GATTSELKA-IEGDTIQKTLRK 232
+ G + ++++A I DT+++ LRK
Sbjct: 754 VYKSPDSPKQGVSLNQIEAEIPVDTVERNLRK 785
>gi|77554722|gb|ABA97518.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1524
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL+ E V G TS
Sbjct: 583 APEVILGTFPVNSIPATVLFDSGATHSFISMKFVGMHGLRKEELSTPMRVHTPGNSSTSV 642
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
V +++Q + A LL + D +LG WL ++
Sbjct: 643 SFIPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI 685
>gi|54287534|gb|AAV31278.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1727
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
T+L DSG+TH+FL FA G++ E +V + S R V+++++G
Sbjct: 555 TVLFDSGATHSFLSMSFAGNHGMEVEDLRHPLMVSTPSNQALSLQRSPSVRIEIKGVPFL 614
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKA 220
A LL + D +LG WL ++ ++ + DG VT+ ++ L++
Sbjct: 615 ANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESLRS 670
>gi|116309867|emb|CAH66904.1| H0823A09.5 [Oryza sativa Indica Group]
Length = 1716
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+F+ KF + GL E V G TS + ++
Sbjct: 667 PVNSIPATVLFDSGATHSFISTKFVGMHGLIREELSTPMRVHTPGNSSTSVQFSPSITIE 726
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL------- 210
+Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 727 IQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETVVYKSLVSPK 786
Query: 211 RGATTSELKA-IEGDTIQKTLRK 232
+G + ++++ I DT++K LRK
Sbjct: 787 KGVSLNQIETEIPVDTVEKNLRK 809
>gi|116308982|emb|CAH66104.1| OSIGBa0101K10.3 [Oryza sativa Indica Group]
Length = 1521
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL + V G TS
Sbjct: 394 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLMRKELSTPMRVHTPGNSSTSV 453
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ D + T + +
Sbjct: 454 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGET 512
Query: 209 TLRGATTSELKA---------IEGDTIQKTLRK 232
+ + S K I DT++K LRK
Sbjct: 513 VVYKSLVSPRKGVSLNQIETEIPVDTVEKNLRK 545
>gi|21672035|gb|AAM74397.1|AC119149_12 Putative retroelement [Oryza sativa Japonica Group]
Length = 1512
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 348 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 407
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 408 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 467
Query: 209 TL-------RGATTSELKA-IEGDTIQKTLRK 232
+G + ++++A I DT++K RK
Sbjct: 468 VYKSLVSPKKGVSLNQIEAEIPVDTVEKNSRK 499
>gi|77555408|gb|ABA98204.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1521
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 394 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 453
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 454 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 513
Query: 209 TL-------RGATTSELKA-IEGDTIQKTLRK 232
+GA+ ++++ I DT +K LRK
Sbjct: 514 VYKSLVSPKKGASLNQIETEIPVDTEEKNLRK 545
>gi|21741068|emb|CAD41692.1| OSJNBb0015D13.7 [Oryza sativa Japonica Group]
Length = 1516
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG++H+F+ +FA GL + V G + +
Sbjct: 389 APEVVLGTFPVNSYPATVLFDSGASHSFISKRFAGTHGLSVVELKIPMQVHTPGNDMRTA 448
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
C V ++++ + + LL + D +LG WL ++ D + T D G +
Sbjct: 449 HYCPSVTIEIKRSPFLSNLILLESKDLDVILGMDWLTRNKGVI-DCASRTITLTNDKGGK 507
Query: 208 VTLRGATTSE------LKAIEG--DTIQKTLRK 232
+T R + + AIEG +T++K+ RK
Sbjct: 508 ITFRSPASQKSVASLNQAAIEGQTETVEKSPRK 540
>gi|77555816|gb|ABA98612.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1775
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 702 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 761
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 762 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 821
Query: 209 TL-------RGATTSELKA-IEGDTIQKTLRK 232
+GA+ ++++ I DT +K LRK
Sbjct: 822 VYKSLVSPKKGASLNQIETEIPVDTEEKNLRK 853
>gi|38569190|emb|CAE02978.3| OSJNBa0086B14.15 [Oryza sativa Japonica Group]
Length = 1516
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG++H+F+ +FA GL + V G + +
Sbjct: 389 APEVVLGTFPVNSYPATVLFDSGASHSFISKRFAGTHGLSVVELKIPMQVHTPGNDMRTA 448
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
C V ++++ + + LL + D +LG WL ++ D + T D G +
Sbjct: 449 HYCPSVTIEIKRSPFLSNLILLESKDLDVILGMDWLTRNKGVI-DCASRTITLTNDKGEK 507
Query: 208 VTLRGA----TTSELK--AIEG--DTIQKTLRK 232
+T R + + L AIEG +T++K+ RK
Sbjct: 508 ITFRSPALQKSVASLNQAAIEGQTETVEKSPRK 540
>gi|62733387|gb|AAX95504.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|62734599|gb|AAX96708.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550234|gb|ABA93031.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 504
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 329 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 388
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
Q A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 389 QEVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTVHALSSESL 448
Query: 219 KA 220
++
Sbjct: 449 RS 450
>gi|77556354|gb|ABA99150.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1082
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 163 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 222
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 223 HYCPSVTIEIQGLIFPANLILLESKDLDVILGMDWL 258
>gi|77551464|gb|ABA94261.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1369
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Query: 78 AISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAK-ITGLKSEPGCLLS 136
AIS+HA+ + +MR+ I + IL+DSGST +F+ K A + G++ P +
Sbjct: 350 AISVHAMRGSEHRGSMRMLGQIQGKEILILVDSGSTASFISKKLAAGLVGVQGLP-TKVQ 408
Query: 137 VVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
V VA+G L + + QG F +L+L D +LG WL
Sbjct: 409 VKVADGAVLHCQSVIQNCEWVSQGHMFCTDFKVLALGNYDVILGMDWL 456
>gi|38346551|emb|CAE02128.2| OSJNBa0035M09.12 [Oryza sativa Japonica Group]
Length = 1435
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 394 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 453
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 454 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 513
Query: 209 TL-------RGATTSELKA-IEGDTIQKTLRK 232
+GA+ ++++ I DT +K LRK
Sbjct: 514 VYKSLVSPKKGASLNQIETKIPVDTEEKNLRK 545
>gi|27552560|gb|AAO19383.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108710558|gb|ABF98353.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1770
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 651 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPCNQALSLQRSPSVRIEI 710
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
QG A LL + D +LG WL ++ D ++ T + QV A +SE
Sbjct: 711 QGVPFLANLILLESKDLDVILGMDWLARYKGVI-DCANRKVTLTSNEGQVVTVYALSSE 768
>gi|116309026|emb|CAH66141.1| H0616A11.5 [Oryza sativa Indica Group]
Length = 1421
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF ++ L E V G TS
Sbjct: 394 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVRMHWLIREELSTPMRVHTPGNSSTSV 453
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 454 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 513
Query: 209 TLR-------GATTSELKA-IEGDTIQKTLRK 232
+ G + ++++A I DT++K L+K
Sbjct: 514 VYKSLVSPKQGVSLNQIEAEIPVDTVEKNLKK 545
>gi|38568032|emb|CAD40406.3| OSJNBa0065J03.2 [Oryza sativa Japonica Group]
Length = 1629
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 91 QTMRLQSSISKASLTILIDSGSTHNFLHHKF-AKITGLKSEPGCLLSVVVANGEKLTSPG 149
Q L+ + + +LIDSGSTH+F+ +K+ GL + +V +A+G +
Sbjct: 493 QQALLRGWVQGTEILMLIDSGSTHSFIDESIGSKLVGLIPLSRSV-TVKIADGGTMKCTQ 551
Query: 150 RCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVT 209
+ G + QG ++ F LL+L DA+LG WL + D+ ++ DG V
Sbjct: 552 QILGCRWWTQGHYFKSDFKLLNLGSYDAILGMDWLEQFSPMQVDWVNKWLEVVIDGQPVR 611
Query: 210 L 210
L
Sbjct: 612 L 612
>gi|116311087|emb|CAH68016.1| H0807C06-H0308C08.3 [Oryza sativa Indica Group]
Length = 1521
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 394 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHIPGNSSTSV 453
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ D + T +
Sbjct: 454 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNGKGET 512
Query: 209 TLRGATTSELKA---------IEGDTIQKTLRK 232
+ + S K I DT++K LRK
Sbjct: 513 VVYKSLVSPRKGVSLNQIETEIPVDTVEKNLRK 545
>gi|31126663|gb|AAP44586.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108709242|gb|ABF97037.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1436
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 371 VNSVPATVLFDSGATHSFLSMGFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 430
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
QG A LL + D +LG WL ++ ++ DG VT+
Sbjct: 431 QGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTNNDGRVVTV 482
>gi|53981359|gb|AAV24913.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1850
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL+ E V G TS
Sbjct: 626 APEVVLGTFPVNSIPATVLFDSGATHSFVSKKFVGMHGLRKEELSTPMRVHTPGNSSTSV 685
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
V +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 686 SFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 745
Query: 209 TLR-------GATTSELKA-IEGDTIQKTLRK 232
+ G + ++++ I DT++K LRK
Sbjct: 746 VYKSPDSPKQGVSLNQIETEIPVDTVEKNLRK 777
>gi|32488367|emb|CAE02926.1| OSJNBb0108J11.19 [Oryza sativa Japonica Group]
gi|32489278|emb|CAE04619.1| OSJNBa0028I23.1 [Oryza sativa Japonica Group]
Length = 1516
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG++H+F+ +FA GL + V G + +
Sbjct: 389 APEVVLGTFPVNSYPATVLFDSGASHSFISKRFAGTHGLSVVELKIPMQVHTLGNDMRTA 448
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
C V ++++ + + LL + D +LG WL ++ D + T D G +
Sbjct: 449 HYCPSVTIEIKRSPFLSNLILLESKDLDVILGMDWLTRNKGVI-DCASRTITLTNDKGEK 507
Query: 208 VTLRGATTSE------LKAIEG--DTIQKTLRK 232
+T R + + AIEG +T++K+ RK
Sbjct: 508 ITFRSPASQKSVASLNQAAIEGQTETVEKSPRK 540
>gi|54291804|gb|AAV32173.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1632
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+F+ KF + GL E V G TS ++
Sbjct: 691 PVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSVQFSPSRTIE 750
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLR------ 211
+Q + A LL + D +LG WL ++ ++ + G V +
Sbjct: 751 IQRSTFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETVVYKSPDSPK 810
Query: 212 -GATTSELKA-IEGDTIQKTLRK 232
G + ++++A I DT++K LRK
Sbjct: 811 QGVSLNQIEAEIPVDTVEKNLRK 833
>gi|78708144|gb|ABB47119.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1522
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 431 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 490
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ D + T + +
Sbjct: 491 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGET 549
Query: 209 TL--------RGATTSELKA-IEGDTIQKTLRK 232
+ +G + ++++A I DT++K RK
Sbjct: 550 VVYKSLVSPKKGVSLNQIEAEIPVDTVEKNSRK 582
>gi|50838904|gb|AAT81665.1| putative retrotransposon protein [Oryza sativa Japonica Group]
gi|108709836|gb|ABF97631.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2784
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 1358 VNSVPATVLYDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSSQALSLQRSPSVRIEI 1417
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
+G A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 1418 KGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSEFL 1477
Query: 219 KA 220
++
Sbjct: 1478 RS 1479
>gi|77555464|gb|ABA98260.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1360
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 428 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVNTPGGGMTTT 487
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 488 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 523
>gi|116308877|emb|CAH66012.1| OSIGBa0093M15.2 [Oryza sativa Indica Group]
Length = 1352
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 327 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRHPLMVSTPSNQALSLQRSPSVRIEI 386
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
+G A LL + D +LG WL ++ D ++ T + +V + A +SE
Sbjct: 387 KGVPFLANLILLESKDIDVILGMDWLARYKGVI-DCANRKVTLTSNDGRVVIVHALSSE 444
>gi|77555297|gb|ABA98093.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1424
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+F+ FA G++ E +V + S R V++++
Sbjct: 367 VNLVPATVLFDSGATHSFISMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 426
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
+G A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 427 KGVSFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 486
Query: 219 KA 220
++
Sbjct: 487 RS 488
>gi|77555436|gb|ABA98232.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1522
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 395 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 454
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 455 HYCPAVTVEIQGLIFPANLILLESKDLDVILGMDWL 490
>gi|110288739|gb|AAP52510.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1416
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 372 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 431
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
C V +++QG A LL + D +LG WL
Sbjct: 432 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWLA 468
>gi|77556355|gb|ABA99151.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 836
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 269 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 328
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 329 HYCPSVTIEIQGLIFPANLILLESKDLDVILGMDWL 364
>gi|22725995|gb|AAN04995.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 1413
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 369 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 428
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
C V +++QG A LL + D +LG WL
Sbjct: 429 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWLA 465
>gi|28273360|gb|AAO38446.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|62733520|gb|AAX95637.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
[Oryza sativa Japonica Group]
gi|108710593|gb|ABF98388.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1229
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 102 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 161
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
C V +++QG A LL + D +LG WL
Sbjct: 162 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWLA 198
>gi|39545594|emb|CAE02838.3| OSJNBa0014F04.4 [Oryza sativa Japonica Group]
Length = 532
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DS +TH+ + +F + GL++E C V G TS
Sbjct: 62 TPEVVLGTFPVNSIPATVLFDSSATHSLISKRFVGMHGLRNEELCTPMRVHTPGNSSTSV 121
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ V +++Q + A LL E D +LG WL ++ D + FTK+ +
Sbjct: 122 SYSRSVLIEIQRSPFLANLILLESEDLDIILGMDWLTKFKGVI-DCANRTVTFTKEKGET 180
Query: 209 TLRGATTSELKAIEGDTIQ 227
+ + S + I + I+
Sbjct: 181 VVYKSPVSPNQGIPLNQIE 199
>gi|38345904|emb|CAE03548.2| OSJNBa0060D06.14 [Oryza sativa Japonica Group]
Length = 1458
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 397 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 456
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
C V +++QG A LL + D +LG WL
Sbjct: 457 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWLA 493
>gi|77554980|gb|ABA97776.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1406
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 447 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 506
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 507 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 542
>gi|38344617|emb|CAE02516.2| OSJNBb0003A12.3 [Oryza sativa Japonica Group]
gi|38347085|emb|CAE05109.2| OSJNBa0001M07.5 [Oryza sativa Japonica Group]
Length = 1471
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 344 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 403
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 404 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 439
>gi|116309457|emb|CAH66529.1| H0502B11.9 [Oryza sativa Indica Group]
Length = 1450
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 323 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 382
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 383 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 418
>gi|108864168|gb|ABA92247.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1378
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V+++
Sbjct: 601 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEN 660
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
+G A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 661 KGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 720
Query: 219 KA 220
++
Sbjct: 721 RS 722
>gi|13129427|gb|AAK13085.1|AC078839_1 Similar to Sorghum bicolor 22 kDakafirinclusterpolyprotein [Oryza
sativa Japonica Group]
Length = 1484
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 370 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 429
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 430 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 465
>gi|50080333|gb|AAT69667.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1524
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 397 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 456
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
C V +++QG A LL + D +LG WL
Sbjct: 457 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWLA 493
>gi|50080316|gb|AAT69650.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1458
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 397 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 456
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 457 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 492
>gi|108709591|gb|ABF97386.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1200
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 283 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 342
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 343 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 378
>gi|15128451|dbj|BAB62635.1| putative polyprotein [Oryza sativa Japonica Group]
gi|20804440|dbj|BAB92137.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353682|gb|AAU44248.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1524
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 397 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 456
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 457 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 492
>gi|110288888|gb|AAP53008.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1595
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 468 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 527
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 528 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 563
>gi|108862521|gb|ABA97778.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1557
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 468 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 527
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 528 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 563
>gi|37991885|gb|AAR06331.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1184
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 283 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 342
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 343 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 378
>gi|110289611|gb|AAP55099.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1565
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 438 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 497
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 498 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 533
>gi|19225016|gb|AAL86492.1|AC077693_31 putative polyprotein [Oryza sativa Japonica Group]
Length = 1524
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 397 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 456
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 457 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 492
>gi|38605881|emb|CAD40007.3| OSJNBb0052B05.10 [Oryza sativa Japonica Group]
Length = 1963
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 978 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 1037
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
Q A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 1038 QEVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 1097
Query: 219 KA 220
+
Sbjct: 1098 RP 1099
>gi|16905208|gb|AAL31078.1|AC091749_7 putative polyprotein [Oryza sativa Japonica Group]
Length = 1524
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 397 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 456
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 457 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 492
>gi|51038165|gb|AAT93968.1| putative polyprotein [Oryza sativa Japonica Group]
gi|51038205|gb|AAT94008.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1500
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 373 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 432
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 433 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 468
>gi|55733831|gb|AAV59338.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1238
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 111 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 170
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 171 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 206
>gi|78708482|gb|ABB47457.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1461
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 370 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 429
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 430 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 465
>gi|77555411|gb|ABA98207.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1562
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 435 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 494
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 495 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 530
>gi|62733354|gb|AAX95471.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|108864031|gb|ABG22378.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1441
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 398 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 457
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 458 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 493
>gi|116308939|emb|CAH66066.1| OSIGBa0092O07.1 [Oryza sativa Indica Group]
gi|116309115|emb|CAH66220.1| OSIGBa0157N01.6 [Oryza sativa Indica Group]
Length = 1445
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG++H+F+ +FA GL + V G +
Sbjct: 389 APEVVLGTFPVNSYPATVLFDSGASHSFISKRFAGAHGLSVVELKIPMQVHTPGNDMRIA 448
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
C V ++++ + + LL + D +LG WL ++ D + T D G +
Sbjct: 449 HYCPSVTIEIKRSPFLSNLILLESKDLDVILGMDWLTRHKGVI-DCASRTITLTNDKGEK 507
Query: 208 VTLRGATTSE------LKAIEG--DTIQKTLRK 232
+T R + + AIEG +T++K+ RK
Sbjct: 508 ITFRSPVSQKSVASLNQAAIEGQTETVEKSPRK 540
>gi|77554249|gb|ABA97045.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1474
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S V++++
Sbjct: 371 VNLVPATVLFDSGATHSFLSMSFAGNDGMEVEDLRRHLMVSTPSNQALSLQHSPSVRIEI 430
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 431 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTIHALSSESL 490
Query: 219 KA 220
+
Sbjct: 491 RP 492
>gi|62733353|gb|AAX95470.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|108864030|gb|ABA91610.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1441
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 398 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 457
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 458 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 493
>gi|50838937|gb|AAT81698.1| putative retrotransposon protein, 5'-partial [Oryza sativa Japonica
Group]
Length = 1633
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 207 VNSVPATVLYDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSSQALSLQRSPSVRIEI 266
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
+G A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 267 KGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSEFL 326
Query: 219 KA 220
++
Sbjct: 327 RS 328
>gi|4539660|gb|AAD22153.1|AF061282_6 polyprotein [Sorghum bicolor]
Length = 1484
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%)
Query: 88 QSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTS 147
+ P+ M SI+ T+L DSG++H F+ F ++ L +V + G +
Sbjct: 380 EGPEIMMGTFSINSIPATVLFDSGASHTFISQAFVRVHSLPLVAMNTPMLVNSPGGTIPV 439
Query: 148 PGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
RC L L+G ++ G D +LG W+
Sbjct: 440 SLRCPSASLSLRGVDFPISPMVMRTSGIDVILGLDWM 476
>gi|255574763|ref|XP_002528289.1| hypothetical protein RCOM_0456620 [Ricinus communis]
gi|223532289|gb|EEF34091.1| hypothetical protein RCOM_0456620 [Ricinus communis]
Length = 247
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 15/125 (12%)
Query: 41 QKYTFGHKCKK--LFLIEA----EEGDEP---KEHEKEKDVTQETPAISLHALARVQ--S 89
+++ GH+CKK L+++ E G EP + H D+ + P ISL+A+ V+ +
Sbjct: 122 ERFVLGHQCKKKQLYMVIVQDIMENGKEPLGEQIHWDNFDLEETAPTISLYAMRGVEDLA 181
Query: 90 PQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCL--LSVVVANGEKLTS 147
QT++L + + ++ ILI S +TH FL I GL + + + +ANG++++
Sbjct: 182 YQTIKLIGNCRRKAIHILIGSVNTHKFLDRGL--IKGLSCSLKLIDPVQITIANGQEVSC 239
Query: 148 PGRCK 152
C+
Sbjct: 240 THMCE 244
>gi|38346421|emb|CAD40208.2| OSJNBa0019J05.6 [Oryza sativa Japonica Group]
Length = 1616
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA ++ E +V + S R V++++
Sbjct: 513 VNSVPATVLFDSGATHSFLSMSFAGNHEMEVEDLRRPLMVSTPSNQALSLQRSPSVKIEI 572
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 573 QGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSSESL 632
Query: 219 KA 220
++
Sbjct: 633 RS 634
>gi|4263052|gb|AAD15321.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7270688|emb|CAB77850.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 839
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 43/230 (18%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAEC--FISGLKDGLRTDVQKYTFGHKCKKLFLIEAEE 59
V EY +F RLL AG + +A+ F+ GL+ LR + + K L+E
Sbjct: 250 VREYDRKFNRLLVYAGRGMEDDQAQMRRFLRGLRPNLRVRCRVSQYATKAA---LVETAA 306
Query: 60 GDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHH 119
E + ++ V +PA+ P+ + Q I+ ++ +S S N
Sbjct: 307 ---EVEEDLQRQVVGVSPAVQ---------PKKTQQQHCIA----SLPPESASRGN---- 346
Query: 120 KFAKITGLKSEPGCLLSVV-VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAV 178
++ +PG L V VA G+ L G KGV +Q+ G + A + +E D +
Sbjct: 347 -------IRGDPGEQLGAVKVAGGQFLAVLGGAKGVDIQIAGESLPADLIISHVELYDVI 399
Query: 179 LGAQWL--------CTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKA 220
LG WL C G + F++ E ++ + LRG ++ A
Sbjct: 400 LGMDWLDHYRVHLDCHRGRV--SFERPEGSAGRENDREGLRGLPGDDIYA 447
>gi|19881742|gb|AAM01143.1|AC108884_25 Putative retroelement [Oryza sativa Japonica Group]
gi|21263216|gb|AAM44893.1|AC122144_16 Putative retroelement [Oryza sativa Japonica Group]
gi|31431896|gb|AAP53608.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1245
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH F+ KF + GL+ E V A G TS
Sbjct: 199 APEVVLGTFPVNSIPATVLFDSGATHLFISKKFVGMHGLRKEELSTPMRVHAPGNSSTSV 258
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
V +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 259 SFSPSVLIEIQRSPFLANLILLKSKDLDVILGMDWLTQFKGVIDCANRTVTLTNEKGETV 318
Query: 209 TLRGATTSE----LKAIEGD----TIQKTLRK 232
+ + + L IE + T++K LRK
Sbjct: 319 VYKSPDSPKQGVSLNQIEAEIPVVTVEKNLRK 350
>gi|116309023|emb|CAH66138.1| H0616A11.2 [Oryza sativa Indica Group]
Length = 1510
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 383 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 442
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ ++ G V
Sbjct: 443 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNGKGETV 502
Query: 209 TLR-------GATTSELKA-IEGDTIQKTLRK 232
R G + ++++ I DT++K RK
Sbjct: 503 VYRSLVSPRKGVSLNQIETEIPVDTVEKNSRK 534
>gi|50872410|gb|AAT85010.1| polyprotein [Oryza sativa Japonica Group]
gi|108708868|gb|ABF96663.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1760
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+ H+F+ KF + G E V G TS
Sbjct: 633 APEVVLGTFPVNSIPATVLFDSGAMHSFISKKFVGMHGFIREELSTPMRVHTPGNSSTSV 692
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 693 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFRGVIDCANRTVTLTNEKGETV 752
Query: 209 TLRGATTSE----LKAIEG----DTIQKTLRK 232
+ + E L IE DT+++ LRK
Sbjct: 753 VYKSPDSPEQGVSLNQIEAEIPVDTVERNLRK 784
>gi|13699784|gb|AAK38383.1|AC079028_7 hypothetical protein [Arabidopsis thaliana]
Length = 712
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 106 ILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVV-VANGEKLTSPGRCKGVQLQLQGTQIE 164
+L DSG+TH+F+ + + EP +VV A G+ + G+ G+ + ++G ++
Sbjct: 278 VLFDSGATHSFVSPRMIGKGKFQKEPRMDPTVVNAAGGQAMIPEGQVCGIPVSIKGIEMP 337
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKAI 221
++ LE + +LG WL + L + + +++F ++G ++ +G + K +
Sbjct: 338 VDLIIIPLEKHEVILGMDWLGKYKATL-NCHRGKVRFEREGGKLEFQGIRPASGKLV 393
>gi|77555011|gb|ABA97807.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1188
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 333 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 392
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
+G A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 393 KGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSEFL 452
Query: 219 KA 220
++
Sbjct: 453 RS 454
>gi|356503071|ref|XP_003520335.1| PREDICTED: uncharacterized protein LOC100785238 [Glycine max]
Length = 498
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 79 ISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVV 138
+SLHAL+ + T+R+ +++ + IL+D GSTHNF+ + + L ++ L+ +
Sbjct: 176 LSLHALSGHPASATLRITGTVNGHEVVILVDGGSTHNFVQDRMVRFLNLAAQSTPRLTFM 235
Query: 139 VANGEKL-------TSPGRCKGV 154
V NG ++ TSP K V
Sbjct: 236 VGNGSEIRCDQCGKTSPSHYKVV 258
>gi|38344560|emb|CAD39902.2| OSJNBa0065B15.6 [Oryza sativa Japonica Group]
Length = 1467
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+ L FA G++ E VV + S R V++++
Sbjct: 532 VNSVPATVLFDSGATHSLLSMSFAGNHGMEVEDLRRPLVVSTPSNQALSLQRSPSVRIEI 591
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
Q A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 592 QEVPFLANLILLESKDPDVILGMDWLARYKGVIDCANRKVTLTSDDGRVVTVHALSSESL 651
Query: 219 KA 220
+
Sbjct: 652 RP 653
>gi|255573330|ref|XP_002527592.1| conserved hypothetical protein [Ricinus communis]
gi|223533031|gb|EEF34794.1| conserved hypothetical protein [Ricinus communis]
Length = 94
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 35/109 (32%)
Query: 41 QKYTFGHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSIS 100
+K+ GH CK+L +E E +E P ISLHA+AR Q+ QTM+ + IS
Sbjct: 15 EKFEIGHNCKQLLWLEVIENEEVD------------PQISLHAIARTQNHQTMQFRGWIS 62
Query: 101 KASLTILIDSGSTHNFLHHKFAKITGLKSEPG-CLLSVVVANGEKLTSP 148
A + S G L V +ANG+KL+SP
Sbjct: 63 NAPAS----------------------NSNRGKANLRVTMANGDKLSSP 89
>gi|21672038|gb|AAM74400.1|AC119149_15 Putative retroelement [Oryza sativa Japonica Group]
Length = 1300
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF GL+ E V G TS
Sbjct: 650 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGRYGLRKEELSTPMRVHTPGNSSTSV 709
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
V +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 710 SFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 769
Query: 209 TL-------RGATTSELKA-IEGDTIQKTLRK 232
+G + ++++ I DT++K LRK
Sbjct: 770 VYKSLVSPKKGVSLNQIETEIPVDTVEKNLRK 801
>gi|108862764|gb|ABA98792.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1631
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 59/132 (44%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+ L FA G++ E ++ + S
Sbjct: 639 APEVILGMFPVNSVPATVLFDSGTTHSILSMSFAGNHGMEIEDLRRPLMISTPSNQALSS 698
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
R V++++QG A LL + + +LG WL ++ ++ + DG V
Sbjct: 699 QRSPSVRIEIQGVPFLANLILLESKYLEVILGMDWLARYKGVIDCANRKVTLTSNDGQVV 758
Query: 209 TLRGATTSELKA 220
T+ + L++
Sbjct: 759 TVHALPSEPLRS 770
>gi|108707286|gb|ABF95081.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1329
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG++H+F+ +FA GL + V G + +
Sbjct: 389 APEVVLGTFPVNSYPATVLFDSGASHSFISKRFAGTHGLSVVELKIPMQVHTPGNDMRAA 448
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
C V ++++ + + LL + D VLG WL ++ D + T D G +
Sbjct: 449 HYCPSVTIEIKRSPFLSNLILLESKDLDVVLGMDWLTRNKGVI-DCASRTITLTNDKGEK 507
Query: 208 VTLRGATTSE------LKAIEG--DTIQKTLRK 232
+T + + AIEG +T++K+ RK
Sbjct: 508 ITFHSPASQKSVASLNQAAIEGQTETVEKSPRK 540
>gi|116309635|emb|CAH66687.1| OSIGBa0097A15.2 [Oryza sativa Indica Group]
Length = 1560
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L +SG+TH+FL FA G++ E +V + S R V++++
Sbjct: 495 VNSVPATVLFNSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 554
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
QG A LL + D +LG WL ++ ++ + DG VT+
Sbjct: 555 QGVPFLANLILLESKDLDVILGMDWLARYKGMIDCANRKVTLTSNDGRVVTV 606
>gi|15217199|gb|AAK92543.1|AC051624_1 Putative retroelement [Oryza sativa Japonica Group]
gi|31431042|gb|AAP52880.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1773
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF GL+ E V G TS
Sbjct: 650 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGRYGLRKEELSTPMRVHTPGNSSTSV 709
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
V +++Q + A LL + D +LG WL ++ D + T + +
Sbjct: 710 SFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCANRTVTLTNEKGET 768
Query: 209 TLRGATTSELKA---------IEGDTIQKTLRK 232
+ + S K I DT++K LRK
Sbjct: 769 VVYKSLVSPKKGVSLNQIETEIPVDTVEKNLRK 801
>gi|38346588|emb|CAE04652.2| OSJNBa0061G20.8 [Oryza sativa Japonica Group]
Length = 1598
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L +SG+TH+FL FA G++ E +V + S R V++++
Sbjct: 495 VNSVPATVLFNSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 554
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
QG A LL + D +LG WL ++ ++ + DG VT+
Sbjct: 555 QGVPFLANLILLESKDLDVILGMDWLARYKGMIDCANRKVTLTSNDGRVVTV 606
>gi|38347241|emb|CAD39354.2| OSJNBa0059H15.5 [Oryza sativa Japonica Group]
Length = 1466
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + + IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 435 APEVILGTFPVDSTPAKILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 494
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 495 HYCPSVTVEIQGMIFPANLILLESKDLDVILGMDWL 530
>gi|108706173|gb|ABF93968.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2453
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 23/174 (13%)
Query: 22 KQEAECFISGLKDGLRTDVQKYTFGHKCKKLF-------LIEA-EEGDEPKEHEKEKDVT 73
K + CF G +++ HKC L+EA +E D+P + +
Sbjct: 2289 KSKGLCFTCG---------ERWGRDHKCASTVQLHVMEELLEALQEDDDPVGDDIVAEAE 2339
Query: 74 QETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFA-KITGLK--SE 130
A+S A+A V+S +++R++ + L +L+DSGSTH+F+ + A K+ G++ S
Sbjct: 2340 GTLMAVSSQAIAGVESSKSIRVRGWVQGLELLMLVDSGSTHSFIDEQVARKLAGIQTLSH 2399
Query: 131 PGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
P + + +A+G + +QG F +L + WL
Sbjct: 2400 P---VQIKIADGGTMQCDRSIPNCNWWIQGCSFRTEFRVLLSRALIPRVAGPWL 2450
>gi|110288688|gb|ABB46921.2| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1068
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C V ++
Sbjct: 603 PVNSIPATVLFDSGATHSFLSKSFATKHGMEVVSLGRPLLVNTPGNQVFSTRYCPSVTIE 662
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++G + LL + D +LG WL
Sbjct: 663 IEGVPFPSSLILLESKDLDVILGMDWL 689
>gi|62733026|gb|AAX95143.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549637|gb|ABA92434.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1847
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL F G++ E +V + S R V++++
Sbjct: 809 VNSVPATVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 868
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
Q A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 869 QEVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRNVTLTSNDGRVVTVHALSSESL 928
Query: 219 KA 220
+
Sbjct: 929 RP 930
>gi|62733821|gb|AAX95930.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550638|gb|ABA93435.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1169
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ IL DSG+TH+F+ +FA GL + V G +T+ C V ++
Sbjct: 472 PVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVE 531
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
+QG A LL + D +LG WL
Sbjct: 532 IQGLIFPANLILLESKDLDVILGMDWL 558
>gi|15451606|gb|AAK98730.1|AC090485_9 Putative mutator-like transposase [Oryza sativa Japonica Group]
Length = 2421
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 23/174 (13%)
Query: 22 KQEAECFISGLKDGLRTDVQKYTFGHKCKKLF-------LIEA-EEGDEPKEHEKEKDVT 73
K + CF G +++ HKC L+EA +E D+P + +
Sbjct: 2257 KSKGLCFTCG---------ERWGRDHKCASTVQLHVMEELLEALQEDDDPVGDDIVAEAE 2307
Query: 74 QETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFA-KITGLK--SE 130
A+S A+A V+S +++R++ + L +L+DSGSTH+F+ + A K+ G++ S
Sbjct: 2308 GTLMAVSSQAIAGVESSKSIRVRGWVQGLELLMLVDSGSTHSFIDEQVARKLAGIQTLSH 2367
Query: 131 PGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
P + + +A+G + +QG F +L + WL
Sbjct: 2368 P---VQIKIADGGTMQCDRSIPNCNWWIQGCSFRTEFRVLLSRALIPRVAGPWL 2418
>gi|3319351|gb|AAC26240.1| contains similarity to reverse transcriptases (PFam: rvt.hmm,
score: 116.22) [Arabidopsis thaliana]
Length = 1322
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 97/245 (39%), Gaps = 36/245 (14%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAEC--FISGLKDGLRTDVQKYTFGHKCKKLFLIE-AE 58
V EY F RLLA AG + +A+ F+ GL+ LR + + K L+E A
Sbjct: 226 VREYDREFNRLLAYAGRGMEDDQAQMRKFLRGLRTDLRVRCRVSQYATKAA---LVETAA 282
Query: 59 EGDEPKEHEKEKDVTQETPAISLHALARVQSP--------QTMRLQSSISKASLTILIDS 110
E +E + ++ V +PA+ + +P + R S+A
Sbjct: 283 EVEE----DLQRQVVGVSPAVQPKKTQQQMTPSKGGKPATEQKRKWDHPSRAGQGCRAGC 338
Query: 111 GSTHNFLHHKFAKITGLKSEPGCL-------LSVVVANGEKLTSPGRCKGVQLQLQGTQI 163
S + L HK A T C L V VA G+ L GR KGV +Q+ G +
Sbjct: 339 FSCGS-LDHKVADCTQRAETRECYHCRERGYLHVKVAGGQVLAVLGRAKGVDIQIAGESM 397
Query: 164 EAYFYLLSLEGCDAVLGAQWL--------CTLGSILWDFDKMEMQFTKDGHQVTLRGATT 215
A + +E D +LG WL C G + F++ E + G + T
Sbjct: 398 PADLIISLVELYDVILGMDWLDHYRVHLDCHRGRV--SFERPEGRLVYQGVRPTSGSLVI 455
Query: 216 SELKA 220
S L+A
Sbjct: 456 SALQA 460
>gi|58532040|emb|CAE05093.3| OSJNBa0009K15.13 [Oryza sativa Japonica Group]
Length = 1480
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 532 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDIRRPLLVSTPSNQALSLQRSPSVRIEI 591
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLC 185
QG A LL + D +LG WL
Sbjct: 592 QGVPFLANLILLESKDLDVILGMDWLA 618
>gi|77555748|gb|ABA98544.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1112
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + I+ T+L DSG+TH+F+ KF I GL+ E V G T
Sbjct: 100 APEVVLGTFPINSVPATVLFDSGATHSFISKKFVGIHGLRKEELSTPMRVHTPGNSSTLV 159
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
V +++ ++ A LL + D +LG W+ ++
Sbjct: 160 SYSPSVLIEIHRSRFLANLILLESKDLDVILGMDWMTKFKGVI 202
>gi|19881768|gb|AAM01169.1|AC113336_21 Putative retroelement [Oryza sativa Japonica Group]
Length = 1449
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C V ++
Sbjct: 345 PVNSIPATVLFDSGATHSFLSKSFATKHGMEVVSLGRPLLVNTPGNQVFSTRYCPSVTIE 404
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++G + LL + D +LG WL
Sbjct: 405 IEGVPFPSSLILLESKDLDVILGMDWL 431
>gi|116310873|emb|CAH67814.1| OSIGBa0138H21-OSIGBa0138E01.5 [Oryza sativa Indica Group]
Length = 1777
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF GL+ E V G TS
Sbjct: 650 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGRYGLRKEELSTPMRVHTPGNSSTSV 709
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
V +++Q + A LL + D +LG WL ++ D + T + +
Sbjct: 710 SFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCASRTVTLTNEKGET 768
Query: 209 TLRGATTSELKA---------IEGDTIQKTLRK 232
+ + S K I DT++K LRK
Sbjct: 769 VVYKSLVSPKKGVSLNQIETEIPVDTVEKNLRK 801
>gi|38344464|emb|CAE04935.2| OSJNBa0017P10.12 [Oryza sativa Japonica Group]
gi|38567639|emb|CAE75877.1| B1234D02.1 [Oryza sativa Japonica Group]
Length = 1742
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ +L DSG+TH+FL F G++ E +V + S R V++++
Sbjct: 639 VNSVPAIVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 698
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 699 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVPALSSESL 758
Query: 219 KA 220
++
Sbjct: 759 RS 760
>gi|62733260|gb|AAX95377.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|62733997|gb|AAX96106.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550108|gb|ABA92905.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1261
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + I+ T+L DSG+TH+F+ KF + GL+ E L V G TS
Sbjct: 374 APEVVLGTFPINSIPTTVLFDSGATHSFISKKFVGMHGLRKEEISTLMRVHTPGNSSTSI 433
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
V +++ ++ A LL + D +LG WL ++
Sbjct: 434 SYSPSVLIEIHRSRFLANLILLESKDLDVILGMDWLTKFKGVI 476
>gi|110739791|dbj|BAF01802.1| hypothetical protein [Arabidopsis thaliana]
Length = 576
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 97/245 (39%), Gaps = 36/245 (14%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAEC--FISGLKDGLRTDVQKYTFGHKCKKLFLIE-AE 58
V EY F RLLA AG + +A+ F+ GL+ LR + + K L+E A
Sbjct: 70 VREYDREFNRLLAYAGRGMEDDQAQMRKFLRGLRTDLRVRCRVSQYATKAA---LVETAA 126
Query: 59 EGDEPKEHEKEKDVTQETPAISLHALARVQSP--------QTMRLQSSISKASLTILIDS 110
E +E + ++ V +PA+ + +P + R S+A
Sbjct: 127 EVEE----DLQRQVVGVSPAVQPKKTQQQMTPSKGGKPATEQKRKWDHPSRAGQGCRAGC 182
Query: 111 GSTHNFLHHKFAKITGLKSEPGCL-------LSVVVANGEKLTSPGRCKGVQLQLQGTQI 163
S + L HK A T C L V VA G+ L GR KGV +Q+ G +
Sbjct: 183 FSCGS-LDHKVADCTQRAETRECYHCRERGYLHVKVAGGQVLAVLGRAKGVDIQIAGESM 241
Query: 164 EAYFYLLSLEGCDAVLGAQWL--------CTLGSILWDFDKMEMQFTKDGHQVTLRGATT 215
A + +E D +LG WL C G + F++ E + G + T
Sbjct: 242 PADLIISLVELYDVILGMDWLDHYRVHLDCHRGRV--SFERPEGRLVYQGVRPTSGSLVI 299
Query: 216 SELKA 220
S L+A
Sbjct: 300 SALQA 304
>gi|77553655|gb|ABA96451.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1351
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 380 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGVHGLIREELSTPMRVHTPGNSSTSV 439
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ +++Q + A LL + D +LG WL ++
Sbjct: 440 QFSPSITIEIQKSPFLANLILLDSKDLDVILGMDWLTKFKGVI 482
>gi|77555641|gb|ABA98437.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1825
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 698 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 757
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 758 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 817
Query: 209 TL-------RGATTSELKA-IEGDTIQKTLRK 232
+GA+ ++++ I D +K LRK
Sbjct: 818 VYKSLVSPKKGASLNQIETEIPMDAEEKNLRK 849
>gi|110289463|gb|AAP54732.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1663
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ A +L DSG++H+F+ F K G K++ + +V + G + + C V L+
Sbjct: 765 SVNSAPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRDIRATKICSEVNLR 824
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ A +L + D +LG WL
Sbjct: 825 IEEVDFLAKPIVLDSQSLDIILGMDWLA 852
>gi|20143546|gb|AAM12303.1|AC091680_4 putative polyprotein [Oryza sativa Japonica Group]
Length = 1658
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ A +L DSG++H+F+ F K G K++ + +V + G + + C V L+
Sbjct: 760 SVNSAPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRDIRATKICSEVNLR 819
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ A +L + D +LG WL
Sbjct: 820 IEEVDFLAKPIVLDSQSLDIILGMDWLA 847
>gi|54287641|gb|AAV31385.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1493
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 398 APEVILGTFPVNSTLAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 457
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 458 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 493
>gi|77553211|gb|ABA96007.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1197
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + S++ T+L DSG+TH+F+ KF + GL+ E V G TS
Sbjct: 285 APEVVLGTFSVNSVPATVLFDSGATHSFISKKFVGMHGLRKEKLSTPMRVHTPGNSSTSV 344
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
V +++Q + A LL + D +LG WL ++
Sbjct: 345 SYSPSVLIEIQISPFLANLILLESKDLDVILGMDWLTKFKGVI 387
>gi|62733803|gb|AAX95912.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549676|gb|ABA92473.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1337
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 370 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 429
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
Q A LL + D +LG WL ++ ++ + DG VT+
Sbjct: 430 QEVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTV 481
>gi|449443978|ref|XP_004139752.1| PREDICTED: uncharacterized protein LOC101213746 [Cucumis sativus]
Length = 431
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 24/151 (15%)
Query: 79 ISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVV 138
+S++++ + +P TM+L+ I + + I+IDSG+TH+F+ F L V+
Sbjct: 34 LSINSIVGLSNPGTMKLKGKIKERKVVIIIDSGATHSFIAKNFVTTLSLPMTETSNYGVI 93
Query: 139 VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKME 198
+ +G + + KG++ ++ T WL LG +D +
Sbjct: 94 LGSGVAV----KGKGIRSNVEVT--------------------GWLHKLGMTEFDMKNLV 129
Query: 199 MQFTKDGHQVTLRGATTSELKAIEGDTIQKT 229
M F G ++ ++G + + +I KT
Sbjct: 130 MTFRHGGRKIEIKGDPSVTKTQVSLKSIIKT 160
>gi|38346261|emb|CAE02083.2| OSJNBa0074B10.11 [Oryza sativa Japonica Group]
Length = 1243
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 100 APEVVLRTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMWVHTPGNSSTSV 159
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ +++Q + A LL + D +LG WL ++
Sbjct: 160 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI 202
>gi|116310126|emb|CAH67143.1| OSIGBa0130P02.7 [Oryza sativa Indica Group]
Length = 1741
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA ++ E ++ + S R V++++
Sbjct: 638 VNSVPATVLFDSGATHSFLSMSFAGNHEMEVEDLRRPLMISTPSNQALSLQRSPSVRIEI 697
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
QG A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 698 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSEFL 757
Query: 219 KA 220
++
Sbjct: 758 RS 759
>gi|449504808|ref|XP_004162300.1| PREDICTED: uncharacterized protein LOC101229007 [Cucumis sativus]
Length = 746
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 68/144 (47%), Gaps = 18/144 (12%)
Query: 41 QKYTFGHKCK-------KLFLIEAE--------EGDEPKEHEKEKDVT---QETPAISLH 82
+KY+ HKCK ++ ++ E E + +E +VT Q +S++
Sbjct: 259 EKYSHDHKCKAKEYRELRMLVVMGENVEYEIIEEDNTEQEELNTIEVTGDEQTVVELSIN 318
Query: 83 ALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANG 142
++ + +P TM+++ I + +LID G+THNF+ + + ++ V++ +G
Sbjct: 319 SVVGLSNPGTMKVKGKIQGREVIVLIDCGATHNFISEGLVEELQINTKITSNYGVILGSG 378
Query: 143 EKLTSPGRCKGVQLQLQGTQIEAY 166
+ G C+ +++ + +E +
Sbjct: 379 TAIKGKGICEAIEIWCNRSGLEEF 402
>gi|77554734|gb|ABA97530.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 567
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KFA + GL+ E V G TS
Sbjct: 294 APEVILGTFPVNTIPATVLFDSGATHSFISKKFAGVHGLRKEELSTPMRVHTPGNSSTSV 353
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
V +++Q + A LL + D +LG WL ++
Sbjct: 354 SYSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI 396
>gi|77554563|gb|ABA97359.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 795
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 111 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 170
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
C + +++QG A LL + D +LG WL ++
Sbjct: 171 HYCPSMTVEIQGLIFPANLILLESKDLDVILGMDWLTRYRGVI 213
>gi|116309193|emb|CAH66288.1| OSIGBa0161P06.5 [Oryza sativa Indica Group]
Length = 1471
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF GL E + G TS
Sbjct: 344 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGKHGLIREELSTPMRIHTPGNSSTSV 403
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 404 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 463
Query: 209 TL-------RGATTSELKA-IEGDTIQKTLRK 232
+G + ++++ I DT++K LRK
Sbjct: 464 GYKSLVSPKKGVSLNQIETEIPVDTVEKNLRK 495
>gi|4325361|gb|AAD17358.1| contains similarity to reverse transcriptase (Pfam: PF00078,
Score=137.6, E=2.3e-37, N=1) and CCHC-type zinc fingers
(Pfam: PF00098, Score=18.3, E=0.024, N=2) [Arabidopsis
thaliana]
Length = 901
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 106 ILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVV-VANGEKLTSPGRCKGVQLQLQGTQIE 164
+L DSG++H F+ + A ++ +PG V V G+ L GR KGV +Q++G +
Sbjct: 228 VLFDSGASHCFITFESASRGNIRGDPGEQFGAVKVDGGQFLAVLGRAKGVDIQIEGESMP 287
Query: 165 AYFYLLSLEGCDAVLGAQWL 184
A + +E D +L WL
Sbjct: 288 ADLIISPVELYDVILRMDWL 307
>gi|15217306|gb|AAK92650.1|AC079634_11 Putative retroelement [Oryza sativa Japonica Group]
gi|31431383|gb|AAP53171.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1109
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 230 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLVREELSTPMRVHTPGNSSTSV 289
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ +++Q + A LL + D +LG WL ++
Sbjct: 290 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI 332
>gi|356537579|ref|XP_003537304.1| PREDICTED: uncharacterized protein LOC100816964 [Glycine max]
Length = 751
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 79 ISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVV 138
+S +AL TM+ S+I+ + IL+DSGS+ NFL + A L EP V+
Sbjct: 367 LSYNALKGSSDLGTMKFSSTINGMVVQILLDSGSSDNFLQPRIANCLKLPIEPASNFQVL 426
Query: 139 VANGEKLTSPG 149
V NG L + G
Sbjct: 427 VGNGNSLVAEG 437
>gi|90186404|gb|ABD91504.1| putative polyprotein [Oryza sativa Indica Group]
Length = 932
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 285 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGVHGLIREELSTPIRVHTPGNSSTSV 344
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ +++Q + A LL + D +LG WL ++
Sbjct: 345 QFSPSITIEIQRSPFLANLILLDSKDLDVILGMDWLTKFKGVI 387
>gi|51854302|gb|AAU10683.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1638
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ TIL DSG+TH+F+ KF + GL E V G TS
Sbjct: 564 APEVVLGTFPVNSIPATILFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 623
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ +++Q + A LL + D +LG WL ++
Sbjct: 624 QFSPSITIEIQRSPFLANLILLGSKDLDVILGMDWLTKFKGVI 666
>gi|240255473|ref|NP_189700.4| aspartyl protease family protein [Arabidopsis thaliana]
gi|332644137|gb|AEE77658.1| aspartyl protease family protein [Arabidopsis thaliana]
Length = 603
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 93 MRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCK 152
MR IS + ++IDSG+T+NF+ + A + L + SV++ + + + G C
Sbjct: 284 MRFYGFISCHKVVVVIDSGATNNFISDELALVLKLPTSTTNQASVLLGQRQCIQTIGTCF 343
Query: 153 GVQLQLQGTQIEAYFYLLSL--EGCDAVLGA--------QWLCTL 187
G+ L +Q +I F LL L D +LG QWL L
Sbjct: 344 GINLLVQEVEINENFLLLDLTKTDVDVILGYGGSQNLERQWLIWL 388
>gi|11994678|dbj|BAB02916.1| unnamed protein product [Arabidopsis thaliana]
Length = 546
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 93 MRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCK 152
MR IS + ++IDSG+T+NF+ + A + L + SV++ + + + G C
Sbjct: 227 MRFYGFISCHKVVVVIDSGATNNFISDELALVLKLPTSTTNQASVLLGQRQCIQTIGTCF 286
Query: 153 GVQLQLQGTQIEAYFYLLSL--EGCDAVLG--------AQWLCTL 187
G+ L +Q +I F LL L D +LG QWL L
Sbjct: 287 GINLLVQEVEINENFLLLDLTKTDVDVILGYGGSQNLERQWLIWL 331
>gi|116310689|emb|CAH67488.1| H0306B06.3 [Oryza sativa Indica Group]
Length = 1510
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 394 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 453
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 454 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 513
Query: 209 TLRGATTSE----LKAIEG----DTIQKTLRK 232
+ + + L IE DT +K LRK
Sbjct: 514 VYKSLVSPKKGVSLNQIETEILVDTGEKNLRK 545
>gi|116317830|emb|CAH65865.1| OSIGBa0132I10.1 [Oryza sativa Indica Group]
Length = 1670
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
T+L DSG+TH+FL FA G++ E +V + S R V+++++G
Sbjct: 600 TVLFDSGATHSFLSVSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIKGVPFL 659
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKA 220
A LL + D +LG WL + ++ + DG VT+ ++ L++
Sbjct: 660 ANLILLESKDLDVILGMDWLARHKGVTDCANRKVTLTSNDGRVVTVHAMSSEFLRS 715
>gi|62954893|gb|AAY23262.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77548962|gb|ABA91759.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1416
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P + S++ +L DSG++H+F+ F K G K++ + +V + G + +
Sbjct: 398 APDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRAT 457
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
C V L+++ A +L + D +LG WL
Sbjct: 458 QICPEVNLRIEEVDFLAKPIVLDSQSLDIILGMDWLA 494
>gi|62732706|gb|AAX94825.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550391|gb|ABA93188.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 574
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ IL DSG+TH+F+ +FA GL + V G +T+ C V ++
Sbjct: 371 PVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPLVTVE 430
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
+QG A LL + D +LG WL
Sbjct: 431 IQGLIFPANLILLESKDLDVILGMDWL 457
>gi|77553813|gb|ABA96609.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1556
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P + S++ +L DSG++H+F+ F K G K++ + +V + G + +
Sbjct: 467 APDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRAT 526
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
C V L+++ A +L + D +LG WL
Sbjct: 527 QICPEVNLRIEEVDFLAKPIVLDSQSLDIILGMDWLA 563
>gi|32489661|emb|CAE04240.1| OSJNBa0089N06.1 [Oryza sativa Japonica Group]
gi|57834090|emb|CAE04759.2| OSJNBb0060E08.22 [Oryza sativa Japonica Group]
Length = 1851
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ +L DSG++H+F+ F K G K++ + +V + G + + C V L+
Sbjct: 755 SVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRATQICPEVNLR 814
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ A +L + D +LG WL
Sbjct: 815 IEEVNFLAKPIVLDSQSLDIILGMDWLA 842
>gi|108708773|gb|ABF96568.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1548
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ FA GL + V G +T+
Sbjct: 435 APEVILGTFPVNSTPAVILFDSGATHSFISKLFAGAHGLSLVKLKIPMRVHTPGGGMTTT 494
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 495 HYCPAVTVEIQGLIFPANLILLESKDLDVILGMDWL 530
>gi|28209485|gb|AAO37503.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 1079
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ FA GL + V G +T+
Sbjct: 397 APEVILGTFPVNSTPAVILFDSGATHSFISKLFAGAHGLSLVKLKIPMRVHTPGGGMTTT 456
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 457 HYCPAVTVEIQGLIFPANLILLESKDLDVILGMDWL 492
>gi|39546203|emb|CAE04628.3| OSJNBa0028I23.10 [Oryza sativa Japonica Group]
Length = 1462
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 397 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 456
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG LL + D +LG WL
Sbjct: 457 HYCPSVTVEIQGLIFPTNLILLESKDLDVILGMDWL 492
>gi|108862184|gb|ABA96442.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1539
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+F+ KFA GL + V G + + C + +++
Sbjct: 456 VNSYPATVLFDSGATHSFISKKFAGTHGLSVVELKIPMRVHTPGNDMNTAHYCPSMTIEI 515
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQVTLRGATT 215
+ + + LL + D +LG WL ++ D + T D G ++T R +
Sbjct: 516 KRSPFLSNLILLESKDLDVILGMDWLTRHKGVI-DCASRTITLTNDKGEKITFRSPVS 572
>gi|53981183|gb|AAV24823.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1374
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 285 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSV 344
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ +++Q + A LL + D +LG WL ++
Sbjct: 345 QFSPSITIEIQRSPFLANLILLDSKDLDVILGMDWLTKFKGVI 387
>gi|307136318|gb|ADN34141.1| ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]
Length = 1359
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 106 ILIDSGSTHNFLHHKFAKITGLKSEP-GCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
+L DSG +H+F+ F L+ EP +LSV GE + S + K Q+++ G IE
Sbjct: 295 VLFDSGFSHSFISSAFVLHARLEVEPLHHVLSVSTPFGECMLSKEKVKACQIEIAGHVIE 354
Query: 165 AYFYLLSLEGCDAVLGAQWLC 185
+L + D +LG WL
Sbjct: 355 VTLLVLDMLDFDVILGMDWLA 375
>gi|77551772|gb|ABA94569.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1777
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF GL+ E V G TS
Sbjct: 650 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGRYGLRKEELSTPMRVHTPGNSSTSV 709
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
V +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 710 SFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV 769
Query: 209 TLR-------GATTSELKA-IEGDTIQKTLRK 232
+ G + ++++ + DT++K LRK
Sbjct: 770 VYKTLAPPKQGVSLNQVEMEVPVDTVEKNLRK 801
>gi|147782338|emb|CAN69569.1| hypothetical protein VITISV_023011 [Vitis vinifera]
Length = 611
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 32/39 (82%)
Query: 195 DKMEMQFTKDGHQVTLRGATTSELKAIEGDTIQKTLRKN 233
+KM+MQFT +V L+G+T+SEL+A+E DTI +TLR++
Sbjct: 183 EKMQMQFTIARRKVLLQGSTSSELRALESDTISRTLRQS 221
>gi|5042447|gb|AAD38284.1|AC007789_10 putative polyprotein [Oryza sativa Japonica Group]
Length = 1220
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+ H+F++ KF + GL E V G TS
Sbjct: 394 APEVVLGTFPVNSIPATVLFDSGAMHSFIYKKFVGMHGLIREELSTPMRVHTPGNSSTSV 453
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
V +++Q + A LL + D +LG WL ++
Sbjct: 454 QFSPSVTIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI 496
>gi|110289096|gb|ABG66083.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1093
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P + S++ +L DSG++H+F+ F K G K++ + +V + G + +
Sbjct: 68 APDVVMGMFSVNSIPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRAT 127
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
C V L+++ A +L + D +LG WL
Sbjct: 128 QICPEVNLRIEEVDFLAKPIVLDSQSLDIILGMDWLA 164
>gi|108862469|gb|ABA97418.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1807
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P + S++ +L DSG++H+F+ F K G K++ + +V + G + +
Sbjct: 702 APDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRAT 761
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
C V L+++ A +L + D +LG WL
Sbjct: 762 QICPEVNLRIEEVDFLAKPIVLDSQSLDIILGMDWLA 798
>gi|55168121|gb|AAV43988.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1594
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 532 VNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 591
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
Q A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 592 QEVPFLANLILLESKDLDVILGMDWLDRHKGVIDCANRKVTLTSNDGRVVTVHALSSESL 651
Query: 219 KA 220
+
Sbjct: 652 RP 653
>gi|46391139|gb|AAS90666.1| putative polyprotein [Oryza sativa Japonica Group]
gi|55733908|gb|AAV59415.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1649
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ +L DSG++H+F+ F K G K++ + +V + G + + C V L+
Sbjct: 623 SVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRATQICPEVNLR 682
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ A +L + D +LG WL
Sbjct: 683 IEEVDFLAKPIVLDSQSLDIILGMDWLA 710
>gi|108710148|gb|ABF97943.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1202
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+F+ +F I GL E V G TS V ++
Sbjct: 652 PVNSVPATVLFDSGATHSFISKQFVGIHGLIREKLSTPMRVHTPGNSSTSVQFSPSVTIE 711
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+Q + A LL + D +LG WL ++
Sbjct: 712 IQRSPFLANLILLESKDLDVILGMDWLTKFKGVI 745
>gi|222628386|gb|EEE60518.1| hypothetical protein OsJ_13847 [Oryza sativa Japonica Group]
Length = 218
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 41 QKYTFGHK--CKKLFLIE-AEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQS 97
+ Y+ GH CK LFL++ A + DE E + ET I LHA+ V+ M L
Sbjct: 113 ETYSRGHNKVCKCLFLLDLAYDDDEEDEGDTTPAADPETLRIFLHAVTCVRPSNAMHLSI 172
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE 143
+ A+L L+D GSTHNFL + A L L V VANG+
Sbjct: 173 RLGDATLHALVDMGSTHNFLSQESAARVRLPLIQRAGLHVTVANGD 218
>gi|116309657|emb|CAH66707.1| OSIGBa0147J19.11 [Oryza sativa Indica Group]
Length = 1851
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ +L DSG++H+F+ F K G K++ + +V + G + + C V L+
Sbjct: 755 SVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRATQICPEVNLR 814
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ A +L + D +LG WL
Sbjct: 815 IEEVDFLAKPIVLDSQSLDIILGMDWLA 842
>gi|62734156|gb|AAX96265.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550571|gb|ABA93368.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA GL + V G +T+
Sbjct: 372 APEVILGTFPVNSTPAKILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 431
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C + +++QG A LL + D +LG WL
Sbjct: 432 HYCPSMTVEIQGLIFPANLILLESKDLDVILGMDWL 467
>gi|29244623|gb|AAO73216.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|31712104|gb|AAP68408.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1185
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+F+ +F I GL E V G TS V ++
Sbjct: 652 PVNSVPATVLFDSGATHSFISKQFVGIHGLIREKLSTPMRVHTPGNSSTSVQFSPSVTIE 711
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+Q + A LL + D +LG WL ++
Sbjct: 712 IQRSPFLANLILLESKDLDVILGMDWLTKFKGVI 745
>gi|90399274|emb|CAJ86189.1| H0306F03.2 [Oryza sativa Indica Group]
Length = 1135
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P + S++ +L DSG++H+F+ F K G K++ + +V + G + +
Sbjct: 130 APDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRAT 189
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V L+++ A +L + D +LG WL
Sbjct: 190 QICPEVNLRIEEVDFLAKPIVLDSQSLDIILGMDWL 225
>gi|90265261|emb|CAD79706.2| H0302E05.9 [Oryza sativa Indica Group]
Length = 1820
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ +L DSG++H+F+ F K G K++ + +V + G + + C V L+
Sbjct: 755 SVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRATQICPEVNLR 814
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ A +L + D +LG WL
Sbjct: 815 IEEVDFLAKPIVLDSQSLDIILGMDWLA 842
>gi|116310101|emb|CAH67121.1| H0502G05.12 [Oryza sativa Indica Group]
Length = 1877
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ +L DSG++H+F+ F K G K++ + +V + G + + C V L+
Sbjct: 781 SVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRATQICPEVNLR 840
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ A +L + D +LG WL
Sbjct: 841 IEEVDFLAKPIVLDSQSLDIILGMDWLA 868
>gi|108862640|gb|ABA98065.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1686
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P + S++ +L DSG++H+F+ F K G K++ + +V + G + +
Sbjct: 609 APDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRAT 668
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
C V L+++ A +L + D +LG WL
Sbjct: 669 QICPEVNLRIEEVDFLAKPIVLDSQSMDIILGMDWLA 705
>gi|90265203|emb|CAH67719.1| H0613A10.2 [Oryza sativa Indica Group]
Length = 1809
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ +L DSG++H+F+ F K G K++ + +V + G + + C V L+
Sbjct: 755 SVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRATQICPEVNLR 814
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ A +L + D +LG WL
Sbjct: 815 IEEVDFLAKPIVLDSQSLDIILGMDWLA 842
>gi|77552426|gb|ABA95223.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1874
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 972 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 1031
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLC 185
+G A LL + D +LG WL
Sbjct: 1032 KGVPFLANLILLESKDLDVILGMDWLA 1058
>gi|77556838|gb|ABA99634.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1851
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ +L DSG++H+F+ F K G K++ + +V + G + + C V L+
Sbjct: 755 SVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRATQICPEVNLR 814
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ A +L + D +LG WL
Sbjct: 815 IEEVDFLAKPIVLDSQSLDIILGMDWLA 842
>gi|38345510|emb|CAE01794.2| OSJNBa0039K24.13 [Oryza sativa Japonica Group]
Length = 1851
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ +L DSG++H+F+ F K G K++ + +V + G + + C V L+
Sbjct: 755 SVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRATQICPEVNLR 814
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ A +L + D +LG WL
Sbjct: 815 IEEVDFLAKPIVLDSQSLDIILGMDWLA 842
>gi|77552465|gb|ABA95262.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1481
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P + S++ +L DSG++H+F+ F K G K++ + +V + G + +
Sbjct: 398 APDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRAT 457
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
C V L+++ A +L + D +LG WL
Sbjct: 458 QICPEVNLRIKEVDFLAKPIVLDSQSLDIILGMDWLA 494
>gi|14018099|gb|AAK52162.1|AC084831_16 putative polyprotein [Oryza sativa Japonica Group]
gi|108709291|gb|ABF97086.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1461
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 8/152 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + L E V G TS
Sbjct: 394 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHLLIREELSTPMRVHTPGNSSTSV 453
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ +++Q + A LL + D +LG WL ++ ++ + G V
Sbjct: 454 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLINEKGETV 513
Query: 209 TL-------RGATTSELKA-IEGDTIQKTLRK 232
+G + ++++A I DT++K RK
Sbjct: 514 VYKSLVSPKKGVSLNQIEAEIPVDTVEKNSRK 545
>gi|15217334|gb|AAK92672.1|AC090714_5 putative polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ +L DSG++H+F+ F K G K++ + +V + G + + C V L+
Sbjct: 383 SVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRATQICPEVNLR 442
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ A +L + D +LG WL
Sbjct: 443 IEEVDFLAKPIVLDSQSLDIILGMDWLA 470
>gi|62701928|gb|AAX93001.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77548823|gb|ABA91620.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1761
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P + S++ +L DSG++H+F+ F K G K++ + +V + G + +
Sbjct: 680 APDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRAT 739
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
C V L+++ A +L + D +LG WL
Sbjct: 740 QICPEVNLRIEEVDFLAKPIVLDSQSLDIILGMDWLA 776
>gi|359496850|ref|XP_003635354.1| PREDICTED: uncharacterized protein LOC100854728 [Vitis vinifera]
Length = 2807
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 166 YFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
Y ++L +EG D VLG QWL LG + D+ + M+F +G + L G
Sbjct: 411 YLFILPIEGPDVVLGIQWLQQLGRVAHDYAALSMEFCWEGRPIILHG 457
>gi|116309082|emb|CAH66190.1| OSIGBa0144J05.2 [Oryza sativa Indica Group]
Length = 1827
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL+ + V G TS
Sbjct: 700 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKDELSTPMRVRTPGNSSTSV 759
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
V +++Q + A LL + D +LG WL ++ D + T + G
Sbjct: 760 SFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCASRTVTLTNEKGET 818
Query: 208 VTLR-------GATTSELKA-IEGDTIQKTLRK 232
V + G + ++++ I DT+ K LRK
Sbjct: 819 VVYKSPDSPKQGVSLNQIETEIPVDTVGKNLRK 851
>gi|116309100|emb|CAH66206.1| OSIGBa0096F13.1 [Oryza sativa Indica Group]
Length = 1827
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL+ + V G TS
Sbjct: 700 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKDELSTPMRVRTPGNSSTSV 759
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
V +++Q + A LL + D +LG WL ++ D + T + G
Sbjct: 760 SFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCASRTVTLTNEKGET 818
Query: 208 VTLR-------GATTSELKA-IEGDTIQKTLRK 232
V + G + ++++ I DT+ K LRK
Sbjct: 819 VVYKSPDSPKQGVSLNQIETEIPVDTVGKNLRK 851
>gi|21742760|emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa Japonica Group]
Length = 1827
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL+ + V G TS
Sbjct: 700 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKDELSTPMRVRTPGNSSTSV 759
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
V +++Q + A LL + D +LG WL ++ D + T + G
Sbjct: 760 SFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI-DCASRTVTLTNEKGET 818
Query: 208 VTLR-------GATTSELKA-IEGDTIQKTLRK 232
V + G + ++++ I DT+ K LRK
Sbjct: 819 VVYKSPDSPKQGVSLNQIETEIPVDTVGKNLRK 851
>gi|77554298|gb|ABA97094.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 676
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T++ DSG+TH+F+ KF + GL E V G TS
Sbjct: 168 APEVVLGTFPVNSIPATVIFDSGATHSFISKKFVGMHGLVREELSTPMRVHTPGNSSTSV 227
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ +++Q + A LL + D +LG WL ++
Sbjct: 228 QFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI 270
>gi|31432239|gb|AAP53894.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1829
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ +L DSG++H+F+ F K G K++ + +V + G + + C V L+
Sbjct: 755 SVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRATQICPEVNLR 814
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ A +L + D +LG WL
Sbjct: 815 IEEVDFLAKPIVLDSQSLDIILGMDWLA 842
>gi|38346425|emb|CAD40212.2| OSJNBa0019J05.10 [Oryza sativa Japonica Group]
Length = 1525
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+ + +FA GL + V G +T+
Sbjct: 398 APEVILGTFPVNSTPAVILFDSGATHSLISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 457
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 458 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 493
>gi|21672017|gb|AAM74379.1|AC116603_15 Putative retroelement [Oryza sativa Japonica Group]
Length = 987
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ TIL DSG+TH+F+ +FA L + V G +T+
Sbjct: 263 APEVILGAYPVNSIPATILFDSGATHSFISKRFAGAHRLYLVKLKIPMRVHTPGGGMTTT 322
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 323 HYCPSVTVEIQGLIFPANLILLESKDLDIILGMDWL 358
>gi|9294235|dbj|BAB02137.1| unnamed protein product [Arabidopsis thaliana]
Length = 529
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 27/204 (13%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQKY----TFGHKCKKLFLIEA 57
V EY+ RFE + L + E FI GLK L+ V+++ G +L EA
Sbjct: 198 VREYRERFEAICLGLVTLPGQHLEEIFIQGLKPTLQDAVRRFKSNGIVGMMNLAQWLEEA 257
Query: 58 EEGDEPKEHEKEKDVTQETPAIS-LHALARVQSPQT------------MRLQSSISKASL 104
E D + V+ I L + VQ Q ++ SIS +
Sbjct: 258 SENDNGTGGDTRAPVSGYRAGIEELMCMTMVQGNQEVFSTCGLMKNKELKFFGSISGHHV 317
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
++ IDSG+T+NF+ A L + L+SV++ +G + S +C G+ GT I
Sbjct: 318 SVRIDSGATNNFMPKDLAIHFKLPGKETNLVSVLLGHGLHIKSKEKCMGI----GGTSIN 373
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLG 188
++S G +W+ T+G
Sbjct: 374 WEKNIMSFN-----HGNKWV-TIG 391
>gi|297735014|emb|CBI17376.3| unnamed protein product [Vitis vinifera]
Length = 1567
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Query: 104 LTILIDSGSTHNFLHHKFAKITGLKSE-PGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQ 162
+ +L D+G+TH+F+ A GLKSE LL + G CKG + L
Sbjct: 429 VRVLFDTGATHSFISASCANALGLKSERVENLLLIESPMGTNSRVDRICKGCVITLADRA 488
Query: 163 IEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFT-KDGHQVTLRGATTSELKAI 221
+ +L + G D +LG WL +++ D + + F +G +V G L
Sbjct: 489 LNVDLRILDMTGYDVILGMDWLAVYRAVI-DCHRRRIIFCLPEGFEVCFVGGKCVSLPFS 547
Query: 222 EGDT-IQKTLRK 232
+ D Q LRK
Sbjct: 548 QSDPCYQYVLRK 559
>gi|110288861|gb|ABB47133.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1577
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+ DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 564 VNLVPATVPFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 623
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
QG A LL + D +LG WL ++ ++ + DG VT+
Sbjct: 624 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSDDGRVVTV 675
>gi|38347459|emb|CAD40090.2| OSJNBb0012A12.12 [Oryza sativa Japonica Group]
Length = 1581
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 478 VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 537
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
Q A LL + D +LG WL ++ ++ DG VT+
Sbjct: 538 QEVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTNNDGRVVTV 589
>gi|62733023|gb|AAX95140.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549634|gb|ABA92431.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1313
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG++H+F+ +FA+ GL + V G + +
Sbjct: 291 APKVVLGTFPVNSYPATVLFDSGASHSFISKRFARTHGLSVVELKIPMQVHTPGNDMRTA 350
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
C V ++++ + + LL + D +LG WL ++ D + T D G +
Sbjct: 351 HYCPSVTIEIKRSPFLSNLVLLESKDLDVILGMDWLTRNKGVI-DCASRTITLTNDRGEK 409
Query: 208 VTL------RGATTSELKAIEG--DTIQKTLRK 232
+T + + AI G +T++K+ RK
Sbjct: 410 ITFLSPASQKSVASLNQAAIVGQTETVEKSPRK 442
>gi|21671877|gb|AAM74239.1|AC074355_1 Putative retroelement [Oryza sativa Japonica Group]
Length = 1065
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 78 AISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAK-ITGLKS-EPGCLL 135
+IS+ A+ ++ MR+ + + IL+DSGST +F+ K A+ + G+ + EP +
Sbjct: 461 SISVQAINGFETVGCMRMLGYVQGKEVLILVDSGSTASFISSKIAQTLQGVVTLEPP--V 518
Query: 136 SVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFD 195
V VANG LT + QG +L+L D +LG WL + D+
Sbjct: 519 QVKVANGSILTCLTSVPRCEWMTQGWVFYTDLKVLNLGSYDMILGMDWLMAHSPMQVDWV 578
Query: 196 KMEMQFTKDGHQVTLRG 212
+ + +TL+G
Sbjct: 579 NKLLTVSWRKESITLQG 595
>gi|77552000|gb|ABA94797.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1784
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ +L DSG++H+F+ F K G K++ + +V + G + + C V L+
Sbjct: 754 SVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRAIQICPEVNLR 813
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ A +L + D +LG WL
Sbjct: 814 IEEVDFLAKPIVLDSQSLDIILGMDWLA 841
>gi|356551381|ref|XP_003544054.1| PREDICTED: uncharacterized protein LOC100808652 [Glycine max]
Length = 463
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 47 HKC-----KKLFLIEAE----EGD----EPKEHEKEKDVTQETPAISLHALARVQSPQTM 93
HKC + L L E E EG+ E + + E+++ E S+ L + +TM
Sbjct: 328 HKCPERALRVLILGEGEALNDEGEIMAMEAVQPDSEEEI--EVECKSMGVLGSMGEHRTM 385
Query: 94 RLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKG 153
+++ I + +LIDSG++HNF+ + GL + + +G K+ S G C G
Sbjct: 386 KIEGKIENVDVLVLIDSGASHNFISPQVTTALGLTITASVAKHIKLGDGHKVVSEGVCYG 445
Query: 154 VQLQLQGTQIEAYFYLL 170
+ L+ T + + LL
Sbjct: 446 LNLREFATGSTSNWDLL 462
>gi|4544430|gb|AAD22339.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1411
Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 55/192 (28%), Positives = 78/192 (40%), Gaps = 20/192 (10%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAEC--FISGLKDGLRTDVQKYTFGHKCKKLFLIEAEE 59
V EY F RLLA AG + +A+ F+ GL+ LR VQ + K + A E
Sbjct: 232 VREYDREFNRLLAYAGRGMEDDQAQMRRFLRGLRPDLR--VQCRVSQYATKAALVETAAE 289
Query: 60 GDEPKEHEKEKDVTQETPAISLHALARVQSPQT--MRLQSSISKASLTILIDSGSTHNF- 116
+E + ++ V +PA+ + +P Q K G +
Sbjct: 290 VEE----DLQRQVVGVSPAVQTKNTQQQVTPSKGGKPAQGQKRKWDHPSRAGQGGRAGYF 345
Query: 117 ----LHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSL 172
L H A T E G L V VA G+ L GR KGV +Q+ G + A + +
Sbjct: 346 SCGSLDHTVADCT----ERG-HLHVKVAGGQFLAVLGRAKGVDIQIAGESMPADLIISPV 400
Query: 173 EGCDAVLGAQWL 184
E D +LG WL
Sbjct: 401 ELYDVILGMDWL 412
>gi|110289018|gb|ABB47435.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1755
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL+ E V G TS
Sbjct: 628 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTPGNSSTSV 687
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
V +++Q A LL + D +LG WL ++
Sbjct: 688 SFSPSVLIEIQRLPFLANLILLESKDLDVILGMDWLTKFNGVI 730
>gi|38347143|emb|CAE02432.2| OSJNBa0039G19.3 [Oryza sativa Japonica Group]
Length = 1472
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ TIL DSG+TH+F+ KF + GL E V G TS + ++
Sbjct: 385 PVNSIPATILFDSGATHSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSVQFSPSITIE 444
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL------- 210
+Q + A LL + D + G WL ++ ++ + G V
Sbjct: 445 IQRSPFLANLILLESKDLDVIHGMDWLTKFKGVIDCANRTVTLTNEKGETVVYKSLVSPK 504
Query: 211 RGATTSELKA-IEGDTIQKTLRK 232
RG + ++++ I DT++K L K
Sbjct: 505 RGVSLNQIETEIPVDTVEKNLGK 527
>gi|147795669|emb|CAN69982.1| hypothetical protein VITISV_027150 [Vitis vinifera]
Length = 1495
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Query: 104 LTILIDSGSTHNFLHHKFAKITGLKSEP-GCLLSVVVANGEKLTSPGRCKGVQLQLQGTQ 162
+ +L D+G+TH+F+ A GLKSE LL + G CKG + L
Sbjct: 445 VRVLFDTGATHSFISASCANALGLKSERVENLLLIESPMGTNSRVDRICKGCVITLADRA 504
Query: 163 IEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQF-TKDGHQVTLRGATTSELKAI 221
+ +L + G D +LG WL +++ D + + F +G +V G L
Sbjct: 505 LNVDLRILDMTGYDVILGMDWLAVYRAVI-DCHRRRIIFCLPEGFEVCFVGGKCVSLPFS 563
Query: 222 EGDT-IQKTLRK 232
+ D Q LRK
Sbjct: 564 QSDPCYQYVLRK 575
>gi|19881623|gb|AAM01024.1|AC090488_24 Putative retroelement [Oryza sativa Japonica Group]
Length = 954
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 78 AISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAK-ITGLKS-EPGCLL 135
+IS+ A+ ++ MR+ + + IL+DSGST +F+ K A+ + G+ + EP +
Sbjct: 397 SISVQAINGFETVGCMRMLGYVQGKEVLILVDSGSTASFISSKIAQTLQGVVTLEPP--V 454
Query: 136 SVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFD 195
V VANG LT + QG +L+L D +LG WL + D+
Sbjct: 455 QVKVANGSILTCLTSVPRCEWMTQGWVFYTDLKVLNLGSYDMILGMDWLMAHSPMQVDWV 514
Query: 196 KMEMQFTKDGHQVTLRG 212
+ + +TL+G
Sbjct: 515 NKLLTVSWRKESITLQG 531
>gi|38346260|emb|CAE02082.2| OSJNBa0074B10.10 [Oryza sativa Japonica Group]
Length = 720
Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 50/106 (47%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
T+L DSG+TH+FL FA G++ E +V + S R V++++QG
Sbjct: 325 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGIPFL 384
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
A LL + D +LG WL ++ ++ + DG VT+
Sbjct: 385 ANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTV 430
>gi|116309223|emb|CAH66314.1| OSIGBa0115J08.1 [Oryza sativa Indica Group]
gi|116309615|emb|CAH66670.1| OSIGBa0110B10.7 [Oryza sativa Indica Group]
Length = 1603
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P + S++ +L DSG++H+F+ F K G K++ + +V++ G + +
Sbjct: 606 APDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVLSPGRNIRAT 665
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCT-LGSILWDFDKMEMQFT---KD 204
C V +++ A +L + D +LG WL G I D+ E T
Sbjct: 666 RICPEVNHRIEEVDFLAKPIVLDSQSLDIILGMDWLAKHKGQI----DRAEKSITLQGPG 721
Query: 205 GHQVTLRGATTSELKAI 221
G QV T + ++I
Sbjct: 722 GKQVRFTSNTPTASRSI 738
>gi|38347655|emb|CAE05045.2| OSJNBa0049H08.6 [Oryza sativa Japonica Group]
Length = 1523
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P + S++ +L DSG++H+F+ F K G K++ + +V++ G + +
Sbjct: 606 APDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVLSPGRNIRAT 665
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCT-LGSILWDFDKMEMQFT---KD 204
C V +++ A +L + D +LG WL G I D+ E T
Sbjct: 666 RICPEVNHRIEEVDFLAKPIVLDSQSLDIILGMDWLAKHKGQI----DRAEKSITLQGPG 721
Query: 205 GHQVTLRGATTSELKAI 221
G QV T + ++I
Sbjct: 722 GKQVRFTSNTPTASRSI 738
>gi|62734517|gb|AAX96626.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550171|gb|ABA92968.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1045
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V +G +++S C + ++
Sbjct: 262 PVNTIPTTVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTSGNQVSSTQYCPSITIE 321
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ + LL + D +LG WL
Sbjct: 322 IEEIPFPSTLILLESKDLDVILGMDWLI 349
>gi|55168106|gb|AAV43974.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1568
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C V ++
Sbjct: 538 PVNSIPATVLFDSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIE 597
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 598 IEEVPFPSSLILLECKDLDVILGMDWL 624
>gi|18652528|gb|AAL77161.1|AC091732_12 Putative polyprotein [Oryza sativa Japonica Group]
Length = 1731
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL+ E V G TS
Sbjct: 604 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTPGNSSTSV 663
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
V +++Q A LL + D +LG WL ++
Sbjct: 664 SFSPSVLIEIQRLPFLANLILLESKDLDVILGMDWLTKFNGVI 706
>gi|146749389|gb|ABQ44355.1| polyprotein [Zea mays]
Length = 1476
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S+ IL DSG++H+F+ KF+ L ++V G K+ + + V +Q
Sbjct: 373 SVYNQPALILFDSGASHSFISQKFSANCKLPFSHSKGSFMIVTPGGKIATNQLNQSVPIQ 432
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWD 193
L ++ +L LE D +LGA W+ TL ++ D
Sbjct: 433 LGSHIVKTTLLVLGLENVDIILGANWM-TLHQVVLD 467
>gi|21740440|emb|CAD41625.1| OSJNBa0091D06.10 [Oryza sativa Japonica Group]
Length = 1831
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ +L DSG++++F+ F K G K++ L +V + G + + C V L+
Sbjct: 757 SVNSVPAIVLFDSGASYSFISQAFVKRNGWKTQNLRLPMIVHSPGRNIRATQVCPEVNLR 816
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ A +L + D +LG WL
Sbjct: 817 IEEVDFLAKPIVLDSQSLDIILGMDWLA 844
>gi|77551972|gb|ABA94769.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1747
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ +L DSG++H+F+ F K G K++ + +V + G + + C V L+
Sbjct: 672 SVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRATQICLEVNLR 731
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ A +L + D +LG WL
Sbjct: 732 IEEVDFLAKPIVLDSQSLDIILGMDWLA 759
>gi|32480101|emb|CAE01992.1| OSJNBb0033G08.8 [Oryza sativa Japonica Group]
Length = 368
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 46 GHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLT 105
G++ KL E + + KE+ + + +E +SLHALA S T++L++ + +
Sbjct: 184 GNEKPKLARGELWKAQQLKEYRRAQ---EEDFNLSLHALAGTCSSATVQLRALVGNQVIL 240
Query: 106 ILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE 143
I +DSGS+H+F++ L + +SV VANGE
Sbjct: 241 IFVDSGSSHSFVNSDLCAKLQLPTTATLPISVKVANGE 278
>gi|19881555|gb|AAM00956.1|AC021892_20 Putative polyprotein [Oryza sativa Japonica Group]
Length = 1167
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+ DSG+TH+FL FA G++ E +V + S R V++++
Sbjct: 111 VNLVPATVPFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 170
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
QG A LL + D +LG WL ++ ++ + DG VT+
Sbjct: 171 QGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSDDGRVVTV 222
>gi|34015248|gb|AAQ56440.1| putative polyprotein [Oryza sativa Japonica Group]
gi|34015300|gb|AAQ56491.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1222
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG++H+F+ + A GL +L V G + +
Sbjct: 205 APEVVLGTFPVNSFPATVLFDSGASHSFISKRIAGTHGLSVVELKILMRVHTPGNDMNTT 264
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
C V ++++ + + LL + D +LG WL ++ D + T D G +
Sbjct: 265 HYCPSVTIEIKRSPFLSNLILLESKDLDVILGMDWLTRHKGVI-DCASRTITLTNDKGEK 323
Query: 208 VTLRGAT 214
+T R
Sbjct: 324 ITFRSPV 330
>gi|38567682|emb|CAE75972.1| B1160F02.3 [Oryza sativa Japonica Group]
Length = 1430
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Query: 82 HALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVAN 141
HA A ++P+ + ++ +L D G+TH+F+ KF ++ GL E V
Sbjct: 543 HASAE-EAPEVVLGTFPVNSIPTIVLFDYGATHSFISKKFVRMHGLVREELSTPMWVHTP 601
Query: 142 GEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
G TS + +++Q + A LL + D +LG WL ++
Sbjct: 602 GNSSTSVQFSPSITIEIQRSSFLANLILLESKDLDVILGMDWLTKFKGVI 651
>gi|90265087|emb|CAH67759.1| H0124E07.6 [Oryza sativa Indica Group]
Length = 368
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 46 GHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLT 105
G++ KL E + + KE+ + + +E +SLHALA S T++L++ + +
Sbjct: 184 GNEKPKLARGELWKAQQLKEYRRAQ---EEDFNLSLHALAGTCSSATVQLRALVGNQVIL 240
Query: 106 ILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE 143
I +DSGS+H+F++ L + +SV VANGE
Sbjct: 241 IFVDSGSSHSFVNSDLCAKLQLPTTATLPISVKVANGE 278
>gi|242117542|dbj|BAH80025.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1727
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G +++S C V ++
Sbjct: 623 PVNSIPATVLFDSGATHSFLSKSFATKHGMEVVSLGRPLLVNTPGNQVSSTRYCPSVTIE 682
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 683 IEEVLFPSSLILLESKDLDVILGMDWL 709
>gi|108709317|gb|ABF97112.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 566
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + I+ T+L DSG+TH+F+ KF + GL E V G TS
Sbjct: 250 APEVVLGTFPINSIPATVLFDSGATHSFISKKFIGMHGLIREELSTPMRVHTLGNSSTSV 309
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ +++Q + A L + D +LG WL ++
Sbjct: 310 QFSPSITIEIQRSPFLANLILFESKDLDVILGMDWLTKFKGVI 352
>gi|38345968|emb|CAE04051.2| OSJNBb0062B06.9 [Oryza sativa Japonica Group]
Length = 1680
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P + S++ +L DSG++H+F+ F K G K++ + +V + G + +
Sbjct: 742 APDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSLGRNIRAT 801
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
C V L+++ A +L + D +LG WL
Sbjct: 802 QICPEVNLKIEEVDFLAKPIVLDSQSLDIILGMDWLA 838
>gi|31415958|gb|AAP50978.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108710193|gb|ABF97988.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1564
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL F G++ E +V + S R V++++
Sbjct: 512 VNSVPATVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEI 571
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
Q A LL + D +LG WL ++ D ++ T + QV +
Sbjct: 572 QEVTFLANLILLESKDLDVILGMDWLARYKGVI-DCANRKVTLTSNDGQVVI 622
>gi|297613085|ref|NP_001066669.2| Os12g0428300 [Oryza sativa Japonica Group]
gi|255670262|dbj|BAF29688.2| Os12g0428300 [Oryza sativa Japonica Group]
Length = 545
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 21/117 (17%)
Query: 13 LARAGHLTDKQEAE--CFISGLKDGLRTDVQKYTFGHKCKK--------LFLIEAEE--G 60
L +A L + + A+ CF G +KY GH C K L + E E
Sbjct: 336 LWKAQQLKEYRRAQGLCFKCG---------EKYAPGHVCAKQEGVQLKALHVQEESEVLS 386
Query: 61 DEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFL 117
DE + DV+ ++ ++SLHA+A T++L++ + + IL+DSGSTH+F+
Sbjct: 387 DEVLDAITALDVSSDSISLSLHAMAGTCPSHTVQLRALVQNQVIIILVDSGSTHSFI 443
>gi|116311106|emb|CAH68033.1| OSIGBa0139N19-OSIGBa0137L10.2 [Oryza sativa Indica Group]
Length = 1680
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P + S++ +L DSG++H+F+ F K G K++ + +V + G + +
Sbjct: 742 APDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSLGRNIRAT 801
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
C V L+++ A +L + D +LG WL
Sbjct: 802 QICPEVNLKIEEVDFLAKPIVLDSQSLDIILGMDWLA 838
>gi|20177638|gb|AAM14693.1|AC097446_22 Putative polyprotein [Oryza sativa Japonica Group]
gi|110288622|gb|ABB46770.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1630
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C V ++
Sbjct: 602 PVNSIPATVLFDSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIE 661
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 662 IEEVPFPSSLILLESKDLDVILGMDWL 688
>gi|62734016|gb|AAX96125.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77550700|gb|ABA93497.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1448
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 20/192 (10%)
Query: 29 ISGLKDGLRTDVQKYTFG------HKC-KKLFLIEAEEGDEPKEHEKEKDVTQETPAISL 81
IS LK R+ +T G HKC + + L EE E + E+E++ P S
Sbjct: 308 ISALKSYRRSKGLCFTCGKRWSKDHKCAQSVQLHVVEELLEAFQSEEEENFVIPVPDSSP 367
Query: 82 HALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVAN 141
+ T+ L + SL + S H+ ++ GL S+P + V V +
Sbjct: 368 EETTLM----TISLHACNGTISLHACNRTDSNHSL------RVKGLLSKP---VKVRVVD 414
Query: 142 GEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQF 201
G L + LQG ++ F LL L G DA+LG WL LG + D+ +++
Sbjct: 415 GGLLQCDKQLPDCSWWLQGRYYKSNFKLLPLNGYDAILGMDWLAGLGVMKIDWMHKWLEY 474
Query: 202 TKDGHQVTLRGA 213
G + ++G
Sbjct: 475 QDKGQLIRIQGV 486
>gi|32489198|emb|CAE04383.1| OSJNBa0027G07.25 [Oryza sativa Japonica Group]
gi|38347092|emb|CAE02564.2| OSJNBa0006M15.7 [Oryza sativa Japonica Group]
Length = 1807
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 5/148 (3%)
Query: 45 FGHKCKKLFLIEAEEGD-EPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKAS 103
F KC K ++G P+ + KDV Q + A + +P + I
Sbjct: 672 FADKCPK---PRRQQGQAPPRPNNGGKDVIQGR-VNHVTAEDVLTTPDVIVGTFLIHSIP 727
Query: 104 LTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQI 163
TIL DSG++H+F+ F L E ++ GE +T+ V +++QG
Sbjct: 728 ATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGEVMTAKYYSPAVPIEIQGIPF 787
Query: 164 EAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL D +LG WL ++
Sbjct: 788 PSDLILLDTRNLDVILGMNWLAQFQGVV 815
>gi|62733129|gb|AAX95246.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550683|gb|ABA93480.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1311
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEP-GCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L+DSG++H+F+ A + P C L + E T G C V+++
Sbjct: 273 VNSVPATVLLDSGASHSFVSRSCASQHQFPTIPLKCSLLIQTPGSEMRTQTG-CPRVKIE 331
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
++G + A +L D +LG WL + ++L
Sbjct: 332 IEGVEFFANLIMLDTPQLDVILGMDWLHSSKAVL 365
>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1280
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 91 QTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGR 150
TM++ + + +L+DSG+THNF+ K GL P + + +G ++ S G
Sbjct: 1010 NTMKIGGKLENIDVVVLVDSGATHNFISAKLTSALGLTITPMAARKIKLGDGHEVLSQGV 1069
Query: 151 CKG 153
CKG
Sbjct: 1070 CKG 1072
>gi|116309001|emb|CAH66120.1| OSIGBa0146N20.5 [Oryza sativa Indica Group]
Length = 1481
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C V ++
Sbjct: 377 PVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIE 436
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 437 IEEVPFPSSLILLESKDLDVILGMDWL 463
>gi|242117543|dbj|BAH80026.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1666
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C V ++
Sbjct: 600 PVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIE 659
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 660 IEEVPFPSSLILLESKDLDVILGMDWL 686
>gi|108708179|gb|ABF95974.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1643
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C V ++
Sbjct: 629 PVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIE 688
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 689 IEEVPFPSSLILLESKDLDVILGMDWL 715
>gi|116317795|emb|CAH65834.1| OSIGBa0124C14.1 [Oryza sativa Indica Group]
Length = 1481
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C V ++
Sbjct: 377 PVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTRYCPSVTIE 436
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 437 IEEVPFPSSLILLESKDLDVILGMDWL 463
>gi|116309189|emb|CAH66284.1| OSIGBa0161P06.1 [Oryza sativa Indica Group]
Length = 1665
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C V ++
Sbjct: 561 PVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIE 620
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 621 IEEVPFPSSLILLESKDLDVILGMDWL 647
>gi|116309024|emb|CAH66139.1| H0616A11.3 [Oryza sativa Indica Group]
Length = 1451
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C V ++
Sbjct: 377 PVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTRYCPSVTIE 436
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 437 IEEVPFPSSLILLESKDLDVILGMDWL 463
>gi|110288697|gb|ABB46940.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1244
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C V ++
Sbjct: 660 PVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIE 719
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 720 IEEVPFPSSLILLESKDLDVILGMDWL 746
>gi|77551437|gb|ABA94234.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1214
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ +L DSG++H+F+ F K G K++ + +V + G + + C V L+
Sbjct: 139 SVNSIPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRATQICPEVNLR 198
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
+ A +L + D +LG WL
Sbjct: 199 TEEVDFLAKPIVLDSQNLDIILGMDWL 225
>gi|116317875|emb|CAH65904.1| H0207B04.5 [Oryza sativa Indica Group]
Length = 1481
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C V ++
Sbjct: 377 PVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIE 436
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 437 IEEVPFPSSLILLESKDLDVILGMDWL 463
>gi|37991871|gb|AAR06317.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1233
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ TIL DS +TH+F+ +FA GL + V G +T+
Sbjct: 379 APEVILGTFPVNSTPATILFDSSATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 438
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +L WL
Sbjct: 439 HYCPSVTVEIQGLIFPANLILLESKDLDVILRMDWL 474
>gi|108706366|gb|ABF94161.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1217
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 139 VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKME 198
+A+G L + LQG ++ F LL L G DA+LG WL LG + D+++
Sbjct: 624 IADGGLLQCEKQLPDCAWWLQGRCYKSNFKLLPLSGYDAILGMDWLVGLGVMKIDWEQKW 683
Query: 199 MQFTKDGHQVTLRG--ATTSELKAIEGDTIQ 227
+++ +G V ++G + E I GD ++
Sbjct: 684 LEYLDNGFPVKIQGVQSKVDECHLISGDQLK 714
>gi|21671935|gb|AAM74297.1|AC083944_15 Putative retroelement [Oryza sativa Japonica Group]
Length = 974
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C V ++
Sbjct: 377 PVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIE 436
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 437 IEEVPFPSSLILLESKDLDVILGMDWL 463
>gi|54633397|gb|AAV35799.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|108709586|gb|ABF97381.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1238
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ TIL DS +TH+F+ +FA GL + V G +T+
Sbjct: 379 APEVILGTFPVNSTPATILFDSSATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTT 438
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +L WL
Sbjct: 439 HYCPSVTVEIQGLIFPANLILLESKDLDVILRMDWL 474
>gi|62733379|gb|AAX95496.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|62734607|gb|AAX96716.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550242|gb|ABA93039.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 592
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL+ + V G TS
Sbjct: 229 APEVVLGTFPVNSVPATVLFDSGATHSFISKKFVGMYGLRKKELSTPMKVHTPGNSSTSV 288
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
V +++Q + A LL + D +LG WL ++
Sbjct: 289 SYSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVI 331
>gi|147769429|emb|CAN61575.1| hypothetical protein VITISV_014037 [Vitis vinifera]
Length = 503
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 106 ILIDSGSTHNFLHHKFAKITGLKSEP-GCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
+L D+G+TH+F+ A +GLKSE LL + G CKG + L +
Sbjct: 341 VLFDTGATHSFISISCANASGLKSERVENLLLIESPMGTNSKVDRICKGCVITLVDIALN 400
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+L + G D +LG WL +I+
Sbjct: 401 VDLRILDMTGYDVILGMDWLAVYRAII 427
>gi|77551190|gb|ABA93987.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1485
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 11/174 (6%)
Query: 41 QKYTFGHKC---------KKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQ 91
+K++ HKC +++F + + + E ++S+HA+ + Q
Sbjct: 410 EKWSPSHKCSGSVQLNAVQEVFALLQQNDSDSGNSSGEDAEPHSLFSLSVHAIQGTTTAQ 469
Query: 92 TMRLQSSISKASLTILIDSGSTHNFLHHK-FAKITGLKSEPGCLLSVVVANGEKLTSPGR 150
TM LQ I + IL+DSGS+ +F+ +++ L P V VANG+ L+
Sbjct: 470 TMCLQGIIQGYDILILVDSGSSCSFISSSVMPQLSNLIQLP-VSFQVKVANGQMLSCETE 528
Query: 151 CKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD 204
V +QG + +L L+ D +LG WL + D+ + ++FT D
Sbjct: 529 LANVSWSVQGHHFCSALKVLPLQSYDMILGMDWLERYSPMDIDWQQKTIRFTLD 582
>gi|222629798|gb|EEE61930.1| hypothetical protein OsJ_16672 [Oryza sativa Japonica Group]
Length = 348
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 135 LSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDF 194
+ V VANGE L + C +Q + + F +L + G D + G W+ + +
Sbjct: 203 IPVKVANGEILYTRAHCPQHAYHIQEEEFASTFRVLEIRGYDIIFGCDWIHQFSPVSLNL 262
Query: 195 DKMEMQFTKDGHQVTL 210
E+ +KDGH + L
Sbjct: 263 KTKELTMSKDGHTLVL 278
>gi|55733883|gb|AAV59390.1| hypothetical protein [Oryza sativa Japonica Group]
gi|57900672|gb|AAW57797.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1253
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA G + V +T+
Sbjct: 272 APEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGFSLVKLKIPMRVHTPRGGMTTT 331
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V +++QG A LL + D +LG WL
Sbjct: 332 HYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWL 367
>gi|77553944|gb|ABA96740.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1234
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%)
Query: 106 ILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEA 165
+L DSG+TH+FL FA G++ E +V + S R V+++++G A
Sbjct: 302 VLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIKGVLFLA 361
Query: 166 YFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKA 220
LL + D +LG WL ++ ++ + DG V + ++ L++
Sbjct: 362 NLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSHDGRVVIVHALSSESLRS 416
>gi|108862645|gb|ABA98103.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 896
Score = 45.1 bits (105), Expect = 0.025, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Query: 83 ALARVQ-SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVAN 141
A A+ Q +P + ++ T+L DSG+TH+FL FA G++ +V
Sbjct: 232 AAAKAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTP 291
Query: 142 GEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQF 201
G +++S C + ++++ + LL + D +LG WL I+ DF ++
Sbjct: 292 GNQVSSTQYCPSITIEIEEITFPSTLMLLESKDLDVILGMDWLIRHRGII-DFANHKVTI 350
Query: 202 TKDGHQ 207
T Q
Sbjct: 351 TSSNGQ 356
>gi|90265093|emb|CAH67706.1| H0512B01.1 [Oryza sativa Indica Group]
Length = 1454
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G + S C V ++
Sbjct: 377 PVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSFGRPLLVNTPGNQAFSTRYCPSVTIE 436
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 437 IEEVPFPSSLILLESKDLDVILGMDWL 463
>gi|284434667|gb|ADB85376.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 839
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ A T+L DSG++H+F+ A LK +V + G +L++ C V++ +
Sbjct: 249 VNSAPATVLFDSGASHSFVSQISAAKHPLKVSTLKTALLVPSPGSELSTNQSCPQVKMII 308
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+G + A +++ + D +LG W +IL
Sbjct: 309 EGVEFLANLVIINTKSLDVILGMDWFTDHQAIL 341
>gi|147816473|emb|CAN64046.1| hypothetical protein VITISV_040537 [Vitis vinifera]
Length = 1259
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 28/114 (24%)
Query: 41 QKYTFGHKCK--KLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSS 98
++YT GHKC+ +L L+E E G E E E+ + ++ P ISL+ALA +TMR+
Sbjct: 289 ERYTPGHKCRQPQLLLMEGESGWE--SSEMEEPLVEQEPEISLYALAGWSESRTMRIYXQ 346
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCK 152
I + H + + P L V VANG +P +C+
Sbjct: 347 IGQ------------HQLVASRLV--------PPGLFPVRVANG----TPMQCR 376
>gi|116309194|emb|CAH66289.1| OSIGBa0161P06.6 [Oryza sativa Indica Group]
Length = 1433
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V + G + S C V ++
Sbjct: 377 PVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNSPGNQAFSTQYCPSVTIE 436
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 437 IEEVPFPSSLILLESKDLDVILGMDWL 463
>gi|147839856|emb|CAN77191.1| hypothetical protein VITISV_006389 [Vitis vinifera]
Length = 1387
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 104 LTILIDSGSTHNFLHHKFAKITGLKSEP-GCLLSVVVANGEKLTSPGRCKGVQLQLQGTQ 162
+ +L D+G+TH+F+ A GLKSE LL + G CKG + L
Sbjct: 369 VRVLFDTGATHSFISASCANALGLKSERVENLLLIESPMGTNSRVDRICKGCVITLANRA 428
Query: 163 IEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ +L + G D +LG WL +++
Sbjct: 429 LNVDLRILDMTGYDVILGMDWLAVYRAVI 457
>gi|78708471|gb|ABB47446.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1705
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL+ E V G TS
Sbjct: 654 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTPGNSSTSV 713
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
V +++Q A LL + D +LG WL ++
Sbjct: 714 SFSPSVLIEIQRLPFLANLILLESKYLDVILGMDWLTKFKGVI 756
>gi|34015152|gb|AAQ56348.1| putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1316
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ S T+L DSG+TH+F+ KF + GL E V TS
Sbjct: 519 APEVVLGTFPVNSISATVLFDSGATHSFISKKFVGVHGLIREELSTPMRVHTPENSSTSV 578
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
V ++++ + A LL + D +LG WL ++
Sbjct: 579 QFSPSVTIEIRRSPFLANLILLESKDLDVILGMDWLTKFKGVI 621
>gi|18092337|gb|AAL59229.1|AF448416_9 gag-pol [Zea mays]
Length = 1470
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ ++L DSG++H+F+ F + + P + + + G + + C V +++
Sbjct: 370 VNSIPASVLFDSGASHSFITASFVEKHNIPKYPLKRILHISSPGGDMKATHSCPHVNIKI 429
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWL--------CTLGSIL 191
QG +L G D +LG WL C G+I+
Sbjct: 430 QGIDFTVDPVVLGSNGIDVILGCNWLKSCDGVIRCANGTIM 470
>gi|217073570|gb|ACJ85145.1| unknown [Medicago truncatula]
gi|388517775|gb|AFK46949.1| unknown [Medicago truncatula]
Length = 185
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 83 ALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANG 142
L + TM++ + + +L+DSG+THNF+ K GL P + + +G
Sbjct: 71 VLGSMGEYNTMKIGGKLENIDVVVLVDSGATHNFISAKLTSALGLTITPMAARKIKLGDG 130
Query: 143 EKLTSPGRCKG 153
++ S G CKG
Sbjct: 131 HEVLSQGVCKG 141
>gi|77555610|gb|ABA98406.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1611
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 2/128 (1%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG++H+F+ +FA GL + V G + +
Sbjct: 502 APEVVLGTFPVNSYPATVLFDSGASHSFISKRFAGTHGLSVVELKIPMQVHTPGNDMRTS 561
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD-GHQ 207
C V ++++ + + LL + D +LG WL ++ D + D G +
Sbjct: 562 HYCPSVTIEIKRSPFLSNLILLESKDLDVILGMDWLTRNKGVI-DCASRTITLNNDKGEK 620
Query: 208 VTLRGATT 215
+T R +
Sbjct: 621 ITFRSPAS 628
>gi|54291835|gb|AAV32203.1| unknown protein [Oryza sativa Japonica Group]
Length = 434
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 104 LTILIDSGSTHNFLHHKFA-KITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQ 162
+ IL+DSGS+ +FL+ A + ++ +P +SV VANG L Q QG
Sbjct: 10 ILILVDSGSSVSFLNSTIADNLKNVQRKPQ-QISVQVANGNILHCTSAITNCQWSTQGYV 68
Query: 163 IEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATT 215
+LSL D +LG WL + ++ ++ + G + L+G +
Sbjct: 69 FNTTLRVLSLNSYDLILGMDWLTEHSPMTVNWATKQLTVSLKGQFILLQGINS 121
>gi|116309187|emb|CAH66283.1| OSIGBa0116O04.5 [Oryza sativa Indica Group]
Length = 1477
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C V ++
Sbjct: 587 PVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIE 646
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 647 IEEVLFPSSLILLESKDLDVILGMDWL 673
>gi|116309037|emb|CAH66150.1| OSIGBa0097I11.2 [Oryza sativa Indica Group]
Length = 1527
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C V ++
Sbjct: 637 PVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIE 696
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 697 IEEVLFPSSLILLESKDLDVILGMDWL 723
>gi|116309038|emb|CAH66151.1| OSIGBa0097I11.3 [Oryza sativa Indica Group]
Length = 1477
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C V ++
Sbjct: 587 PVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIE 646
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 647 IEEVLFPSSLILLESKDLDVILGMDWL 673
>gi|50582700|gb|AAT78770.1| putative retrotransposon gag protein [Oryza sativa Japonica Group]
gi|108709720|gb|ABF97515.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 748
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 13/184 (7%)
Query: 41 QKYTFGHKCKKLFLIEAEEG-----DEPKEHEKEKDVTQETPA------ISLHALARVQS 89
+K++ HKC + A + +P++ + E+PA +SL AL V+S
Sbjct: 435 KKWSHNHKCANSVQLHAVQEVFAHLQDPQDSVSADILDVESPARSELMVVSLLALQGVES 494
Query: 90 PQTMRLQSSISKASLTILIDSGSTHNFLHHKFAK-ITGLKSEPGCLLSVVVANGEKLTSP 148
TMR+ + + IL+DSGS+ +F+ K A ++GL S P L V VA+G L
Sbjct: 495 VGTMRILGYVQGFEVLILVDSGSSVSFISSKLATGLSGLHSLP-TPLKVQVASGGVLHCD 553
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQV 208
+ QG +L L D +LG WL T + D+ + + +
Sbjct: 554 SIVTQCEWFTQGYTFRTDLRVLPLTSFDMILGIDWLATHSPMTVDWCNRVLTISAHRQSI 613
Query: 209 TLRG 212
TL G
Sbjct: 614 TLCG 617
>gi|116308880|emb|CAH66015.1| OSIGBa0093M15.5 [Oryza sativa Indica Group]
Length = 986
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C V ++
Sbjct: 377 PVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTRYCPSVTIE 436
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 437 IEEVLFPSSLILLESKDLDVILGMDWL 463
>gi|116309186|emb|CAH66282.1| OSIGBa0116O04.4 [Oryza sativa Indica Group]
Length = 1527
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C V ++
Sbjct: 637 PVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIE 696
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 697 IEEVLFPSSLILLESKDLDVILGMDWL 723
>gi|116309157|emb|CAH66257.1| OSIGBa0139I12.6 [Oryza sativa Indica Group]
Length = 1443
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C V ++
Sbjct: 339 PVNSIPATVLFDSGATHSFLSKSFASKHGIEVVSLGRPLLVNTPGNQVFSTQYCPSVTIE 398
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 399 IEEVLFPSSLILLESKDLDVILGMDWL 425
>gi|242081169|ref|XP_002445353.1| hypothetical protein SORBIDRAFT_07g011900 [Sorghum bicolor]
gi|241941703|gb|EES14848.1| hypothetical protein SORBIDRAFT_07g011900 [Sorghum bicolor]
Length = 1488
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAK-----ITGLKSEPGCLLSVVVANGEKLTSPGRCKG 153
+++ +L DSG++H+F+ FA + L S C + A G ++ + +
Sbjct: 320 VNQHPTVVLFDSGASHSFMSQTFASKHGQHVIDLDSGKFC----ISAAGNQIATNQVVRD 375
Query: 154 VQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
VQ+ ++G A +L G D +LG +W+ G ++
Sbjct: 376 VQIAIEGRNYSANLVILPGLGIDVILGMKWMSDHGVLI 413
>gi|147807472|emb|CAN66189.1| hypothetical protein VITISV_006047 [Vitis vinifera]
Length = 1573
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 104 LTILIDSGSTHNFLHHKFAKITGLKSEP-GCLLSVVVANGEKLTSPGRCKGVQLQLQGTQ 162
+ +L D+G+TH+F+ A GLKSE LL + G CKG + L
Sbjct: 530 VRVLFDTGATHSFISASCANALGLKSERVENLLLIESPMGTNSRVDRICKGCVITLADRA 589
Query: 163 IEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ +L + G D +LG WL +++
Sbjct: 590 LNVDLRILDMTGYDVILGMDWLAVYRAVI 618
>gi|116309152|emb|CAH66252.1| OSIGBa0139I12.1 [Oryza sativa Indica Group]
Length = 1585
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ T+L DSG+TH+FL FA G++ +V G ++ S C ++
Sbjct: 592 SVNSIPATMLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQVFSTQYCPSATIE 651
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
++ + LL + D +LG WL I+
Sbjct: 652 IEEVPFPSSLILLESKDLDVILGMDWLSRHRGII 685
>gi|108706119|gb|ABF93914.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1776
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ +L D G++H+F+ F K G K++ + +V + G + + C V L+
Sbjct: 680 SVNSVPAIVLFDLGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRATQICPEVNLR 739
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ A +L + D +LG WL
Sbjct: 740 IEEVDFLAKPIVLDSQSLDIILGMDWLA 767
>gi|77555030|gb|ABA97826.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1177
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF I GL E V G TS
Sbjct: 100 APEVVLGTFPVNSIPTTVLFDSGATHSFIGKKFVGIHGLIREELSTPMRVHTLGNSSTSV 159
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ +++Q + A LL + D LG WL ++
Sbjct: 160 QFSPSITIEIQRSPFLANLILLESKDLDINLGMDWLTKFKGVI 202
>gi|18652524|gb|AAL77157.1|AC091732_8 Putative polyprotein [Oryza sativa Japonica Group]
gi|31431769|gb|AAP53495.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1839
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L+ E ++ G +T+ V +++
Sbjct: 736 IHSIPATILFDSGASHSFISVPFVGRNQLRVERLRNPLLITTPGGVMTAKYYSPAVPIEI 795
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 796 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 828
>gi|55168098|gb|AAV43966.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1684
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P + S++ +L DSG++H+F+ F K G K++ + +V + + +
Sbjct: 685 TPDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPWRNIRAT 744
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
C V L+++ A +L + D +LG WL
Sbjct: 745 QICPEVNLRIEEVDFLAKPIVLDSQSLDIILGMDWLA 781
>gi|108708187|gb|ABF95982.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1724
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 8/135 (5%)
Query: 106 ILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEA 165
+L DSG+TH+F+ KF GL+ E V TS V +++Q + A
Sbjct: 677 VLFDSGATHSFISKKFVGRYGLRKEELSTPMRVHTPRNSSTSVSFSPSVLIEIQRSPFLA 736
Query: 166 YFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLR-------GATTSEL 218
LL + D +LG WL ++ ++ + G V + G + +++
Sbjct: 737 NLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETVVYKSPDSPKQGVSLNQI 796
Query: 219 KA-IEGDTIQKTLRK 232
+A I DT++K LRK
Sbjct: 797 EAEIPVDTVEKNLRK 811
>gi|38345756|emb|CAE03484.2| OSJNBa0065O17.9 [Oryza sativa Japonica Group]
Length = 1851
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ +L DSG++H+ + F K G K++ + ++ + G + + C V L+
Sbjct: 755 SVNSVPAIVLFDSGASHSIISQAFVKRNGWKTQNLRVPMIIHSPGRNIRATQICPEVNLR 814
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ A +L + D +LG WL
Sbjct: 815 IEEVNFLAKPIVLDSQSLDIILGMDWLA 842
>gi|38347272|emb|CAE05319.2| OSJNBa0056L23.17 [Oryza sativa Japonica Group]
Length = 963
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ +V G ++ S C V +++
Sbjct: 542 VNSIPATVLFDSGATHSFLSKSFASNHGIEVISLGRPLLVNTPGNQVFSTQYCPSVTIEI 601
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWL 184
+ + LL + D +LG WL
Sbjct: 602 EEVLFPSSLILLESKDLDVILGMDWL 627
>gi|222618930|gb|EEE55062.1| hypothetical protein OsJ_02776 [Oryza sativa Japonica Group]
Length = 692
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 41 QKYTFGHKCKKLFLIEA-----EEGDEPKEHEKEKDVTQETPAISLHALARVQSPQ 91
+KY GH+CKK F+IE + GDE + +T + P+I LHALA + +P+
Sbjct: 454 EKYVAGHRCKKSFVIEVISFPEDTGDEEDSTPEAHAITLDEPSIFLHALAGISAPK 509
>gi|62734481|gb|AAX96590.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550403|gb|ABA93200.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1640
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 83 ALARVQ-SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVAN 141
A+A Q +P + ++ +L DSG+TH+FL FA G++ +V
Sbjct: 674 AVAEAQNAPDVVLGTFPVNSIPAFVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTP 733
Query: 142 GEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
G +++S C V ++++ + LL + D +LG WL
Sbjct: 734 GNQVSSTQYCPSVTIEIEEIPFPSSLILLESKDLDVILGMDWL 776
>gi|242075268|ref|XP_002447570.1| hypothetical protein SORBIDRAFT_06g004067 [Sorghum bicolor]
gi|241938753|gb|EES11898.1| hypothetical protein SORBIDRAFT_06g004067 [Sorghum bicolor]
Length = 908
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 72/190 (37%), Gaps = 7/190 (3%)
Query: 2 VSEYQTRFERLLARAGHLT--DKQEAECFISGLKDGLRTDVQKYTF----GHKCKKLFLI 55
V+EY FE+L A + D + F+ GL LR + T+ + + L
Sbjct: 164 VAEYHDTFEQLARYAPNEVREDADKQRLFMKGLYYELRLQLAGNTYPTFQALVNRAIVLD 223
Query: 56 EAEEGDEPKEHEKEKDVTQETPAISLHALARVQSP-QTMRLQSSISKASLTILIDSGSTH 114
+G + K + P ++ A VQ + M SI+ TIL DSG++H
Sbjct: 224 NMRKGQDKKRRMLAQSSGSNNPKVNNMAAETVQEGLEIMMGTFSINSIPATILFDSGASH 283
Query: 115 NFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEG 174
F+ F + + +V + G + C L L+ ++ G
Sbjct: 284 TFISQAFVRDHSIPLVAMITHMLVNSPGGTIPVSYCCPSASLSLRRVDFPISPMVMRTSG 343
Query: 175 CDAVLGAQWL 184
D +LG W+
Sbjct: 344 IDMILGLDWM 353
>gi|116311090|emb|CAH68019.1| H0807C06-H0308C08.6 [Oryza sativa Indica Group]
Length = 1260
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C ++
Sbjct: 239 PVNSIPATVLFDSGATHSFLSKSFASNLGMEVVSLGRPLLVNTPGNQVFSTQYCPSATIE 298
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 299 IEEVPFPSSLNLLESKDLDVILGMDWL 325
>gi|108864565|gb|ABA94541.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1347
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 25/173 (14%)
Query: 22 KQEAECFISGLKDGLRTDVQKYTFGHKCKKLF-------LIEAEE-GDEPKEHEKEKDVT 73
+ ECF G +K+ GHKC K L+E + DEP + E+ +
Sbjct: 348 RARGECFKCG---------EKFGPGHKCPKAVQLHVLDELLEVFQFSDEPGQVEESS--S 396
Query: 74 QETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGL--KSEP 131
E +S +AL + +T+ LQ I + + ILIDSGS+ +F+ L S P
Sbjct: 397 DEELLLSENALFGTEGKRTIWLQGLIQQ--VLILIDSGSSSSFMASHLVDRLHLVPNSIP 454
Query: 132 GCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
L V++ +G KL + V+ QG + F +L L G D +LG WL
Sbjct: 455 SAL--VMIIDGGKLFCDEMAEQVEWWCQGNTFSSNFKILGLGGYDLILGMDWL 505
>gi|77555016|gb|ABA97812.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1702
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C ++
Sbjct: 598 PVNSIPATVLFDSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPGNQVFSTQYCPSATIE 657
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 658 IEEVPFPSSLILLESKDLDVILGMDWL 684
>gi|19881606|gb|AAM01007.1|AC090488_7 Putative retroelement [Oryza sativa Japonica Group]
Length = 1496
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA ++ E +V + S R +++++
Sbjct: 563 VNSVPATVLFDSGATHSFLSMSFAGNHRMEVEDLRRPLMVSTPSNQALSLQRSPSIRIEI 622
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
Q A LL + D +LG WL ++ ++ + DG VT+
Sbjct: 623 QEVPFLANLTLLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTV 674
>gi|77555521|gb|ABA98317.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 583
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ +F I G++ E V G T+
Sbjct: 404 APEVVLGTFPVNSIPATVLFDSGATHSFISKRFLGIHGVRKEELSTPMRVHTPGNSSTTV 463
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
V +++ +Q A LL + +LG WL ++
Sbjct: 464 SYSPSVLIEIHKSQFLANLILLESKDLHVILGMDWLTKFKGVI 506
>gi|22655778|gb|AAN04195.1| Putative retroelement [Oryza sativa Japonica Group]
Length = 1523
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA ++ E +V + S R +++++
Sbjct: 592 VNSVPATVLFDSGATHSFLSMSFAGNHRMEVEDLRRPLMVSTPSNQALSLQRSPSIRIEI 651
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
Q A LL + D +LG WL ++ ++ + DG VT+
Sbjct: 652 QEVPFLANLTLLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTV 703
>gi|38347308|emb|CAE02303.2| OSJNBa0042F21.10 [Oryza sativa Japonica Group]
Length = 2388
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 1390 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKNYSPAVPIEI 1449
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 1450 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 1482
>gi|77555766|gb|ABA98562.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1824
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
S++ +L DSG++H+F+ F K G K++ + +V + + + C V L+
Sbjct: 772 SVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPRSNIRATQICPEVNLR 831
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
++ A +L + D +LG WL
Sbjct: 832 IEEVDFLAKPIVLDSQSLDIILGMDWLA 859
>gi|110288673|gb|ABG65937.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1251
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA ++ E +V + S R +++++
Sbjct: 320 VNSVPATVLFDSGATHSFLSMSFAGNHRMEVEDLRRPLMVSTPSNQALSLQRSPSIRIEI 379
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
Q A LL + D +LG WL ++ ++ + DG VT+
Sbjct: 380 QEVPFLANLTLLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTV 431
>gi|108862573|gb|ABA97909.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1613
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F++ F L E ++ G +T+ V +++
Sbjct: 531 IHSIPATILFDSGASHSFIYVPFVGRNRLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 590
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 591 QGIPFPSDLILLDTKNLDVILGINWLAQFQGVV 623
>gi|38347301|emb|CAE02296.2| OSJNBa0042F21.3 [Oryza sativa Japonica Group]
gi|38347573|emb|CAE05006.2| OSJNBb0093G06.14 [Oryza sativa Japonica Group]
Length = 1529
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 647 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLIITTPGGVMTAKYYSPAVPIEI 706
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 707 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 739
>gi|38344564|emb|CAD39906.2| OSJNBa0065B15.10 [Oryza sativa Japonica Group]
Length = 1500
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 5/148 (3%)
Query: 45 FGHKCKKLFLIEAEEGD-EPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKAS 103
F KC K ++G P+ + KDVT+ + A + +P + I
Sbjct: 459 FADKCPK---PRRQQGQAPPRPNNGGKDVTRGR-VNHVTAEDMLTTPDVIVGTFLIHSIP 514
Query: 104 LTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQI 163
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 515 ATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPF 574
Query: 164 EAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 575 PSDLILLDTKNLDVILGMNWLAQFQGVV 602
>gi|38346259|emb|CAE02081.2| OSJNBa0074B10.9 [Oryza sativa Japonica Group]
Length = 1659
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C ++
Sbjct: 571 PVNSIPATVLFDSGATHSFLSKSFASNHGMEVVSLGRSLLVNTPGNQVFSTQYCPSATIE 630
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 631 IEEVPFPSSLILLESKDLDVILGMDWL 657
>gi|21742535|emb|CAD40160.1| OSJNBb0069N01.2 [Oryza sativa Japonica Group]
gi|38344505|emb|CAE05184.2| OSJNBa0013A04.21 [Oryza sativa Japonica Group]
Length = 1717
Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 3/147 (2%)
Query: 45 FGHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASL 104
F KC K + + P+ + KDV ++ + A + +P + I
Sbjct: 597 FADKCPKPRRQQGQP--PPRSNNGGKDVIRDR-VNHVTAEDVLTTPDVIVGTFLIHSIPA 653
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 654 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 713
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL I+
Sbjct: 714 SDLILLDTKNLDVILGMNWLAQFQGIV 740
>gi|38346256|emb|CAE02078.2| OSJNBa0074B10.6 [Oryza sativa Japonica Group]
Length = 1447
Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ +V G ++ S C +++
Sbjct: 374 VNSIPATVLFDSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPGNQVFSTQYCPSATIEI 433
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWL 184
+ + LL + D +LG WL
Sbjct: 434 EEVPFPSSLILLESKDLDVILGMDWL 459
>gi|116317882|emb|CAH65910.1| OSIGBa0102O13.1 [Oryza sativa Indica Group]
Length = 1332
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ +L DSG+TH+FL FA G++ +V G + S C V ++
Sbjct: 357 PVNSIPAIVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQAFSTRYCPSVTIE 416
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL-CTLGSI 190
++ + LL + D +LG WL C G I
Sbjct: 417 IEEVPFPSSLILLESKDLDVILGMDWLTCHRGVI 450
>gi|38567989|emb|CAE04032.2| OSJNBb0068N06.8 [Oryza sativa Japonica Group]
Length = 947
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 5/148 (3%)
Query: 45 FGHKCKKLFLIEAEEGD-EPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKAS 103
F KC K ++G P+ + KDVT+ + A +++P + I
Sbjct: 202 FADKCPK---PRRQQGQAPPRPNNGGKDVTRGR-VNHVTAEDVLRTPDIIVGTFLIHSIP 257
Query: 104 LTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQI 163
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 258 ATILFDSGASHSFISVPFMGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIAF 317
Query: 164 EAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 318 PSDLILLDTKNLDVILGMNWLAQFQGVV 345
>gi|116308918|emb|CAH66048.1| OSIGBa0131F24.2 [Oryza sativa Indica Group]
Length = 1437
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ ++L DSG+TH+FL FA G++ +V G +++S C +++
Sbjct: 334 VNSIPASVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQVSSTQYCPSATIEI 393
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWL 184
+ + LL + D +LG WL
Sbjct: 394 EEVPFPSSLILLESKDLDVILGMDWL 419
>gi|110289019|gb|ABB47436.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1504
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 401 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 460
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D VLG WL ++
Sbjct: 461 QGIPFPSDLILLDTKNLDVVLGMNWLAQFQGVV 493
>gi|21671891|gb|AAM74253.1|AC074355_15 Putative retroelement [Oryza sativa Japonica Group]
gi|31430430|gb|AAP52347.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1140
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C ++
Sbjct: 239 PVNSIPATVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQVFSTQYCPSATIE 298
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 299 IEEVPFPSSLILLESKDLDVILGMDWL 325
>gi|58532059|emb|CAD40391.3| OSJNBa0004L19.10 [Oryza sativa Japonica Group]
Length = 515
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 216 IHSIPATILFDSGASHSFMSVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 275
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 276 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 308
>gi|78707944|gb|ABB46919.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1778
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G + S C V ++
Sbjct: 674 PVNSIPATVLFDSGATHSFLSKSFAIKHGMEVVSLGRPLLVNTPGNQAFSTRYCPSVTIE 733
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 734 IEEVPFPSSLILLESKDLDVILGMDWL 760
>gi|294892660|ref|XP_002774170.1| gag/pol/env polyprotein, putative [Perkinsus marinus ATCC 50983]
gi|239879387|gb|EER05986.1| gag/pol/env polyprotein, putative [Perkinsus marinus ATCC 50983]
Length = 2179
Score = 43.1 bits (100), Expect = 0.082, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 88 QSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTS 147
Q+ T+ L S ++ T L+DSG+ N++ H+ A G K P C S +ANG +
Sbjct: 742 QAGPTLTLYPSGGQSPFTALLDSGAVRNYVGHEMAAARGWKISP-CSTSAKLANGAIVKL 800
Query: 148 PGRCKGVQLQLQGTQIEAYFYLL----SLEGCDA---VLGAQWLCTL 187
G + V + G E F++L + G DA +LG + +C L
Sbjct: 801 SGTTE-VTVHRDGRDYELQFFVLPGSGASTGVDASTCILGVRSMCAL 846
>gi|38344419|emb|CAE02385.2| OSJNBb0080H08.11 [Oryza sativa Japonica Group]
Length = 1809
Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 3/147 (2%)
Query: 45 FGHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASL 104
F KC KL + + P+ + KDV + + A + +P + I
Sbjct: 668 FADKCPKLRRQQGQA--PPRSNNGGKDVIRGR-VNHVTAEDVLTTPDVIVGTFLIHSIPA 724
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 725 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 784
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 785 SDLILLDTKSLDVILGMNWLAQFQGVV 811
>gi|116308973|emb|CAH66097.1| OSIGBa0114I04.4 [Oryza sativa Indica Group]
Length = 1455
Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+F+ FA G++ +V G ++ S C ++
Sbjct: 379 PVNSIPATVLFDSGATHSFMSKSFASNHGMEVVSLGRPLLVNTPGNQVFSTQYCPSATIE 438
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 439 IEEVPFPSSLILLESKDLDVILGMDWL 465
>gi|108708202|gb|ABF95997.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1764
Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F + L E ++ G +T+ V +++
Sbjct: 661 IHSIPATILFDSGASHSFISVPFVGKSQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 720
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 721 QGIPFSSDLILLDTKNLDVILGMNWLAQFQGVV 753
>gi|77551535|gb|ABA94332.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1668
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 666 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPMLITTPGGVMTAKFYSPAVPIEI 725
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 726 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 758
>gi|116309666|emb|CAH66715.1| OSIGBa0118P15.5 [Oryza sativa Indica Group]
Length = 1434
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 30/144 (20%)
Query: 67 EKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITG 126
+KE D ++ IS HA+ T L + + L+DSGST+ F++++FA
Sbjct: 465 KKEDDNEEQLMQISTHAIQGTYGINTFSLITYVKGRKAVALVDSGSTNTFMNYEFA---- 520
Query: 127 LKSEPGCLL------SVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLG 180
L+S GC + V+VA G L S + + +Q ++QG Y + + G
Sbjct: 521 LRS--GCEIIEFDHNRVMVAGGGILNSTAKTEVIQYKVQG-----YLFDYTAPG------ 567
Query: 181 AQWLCTLGSILWDFDKMEMQFTKD 204
G +L F+KM K+
Sbjct: 568 -------GKVLIKFEKMNKMLDKN 584
>gi|449470397|ref|XP_004152903.1| PREDICTED: uncharacterized protein LOC101208187 [Cucumis sativus]
Length = 1969
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 137 VVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDK 196
+++ +G+ + G CKG + L I F L L D VLG WL G++ D+ +
Sbjct: 950 IIMGSGKAVQGKGMCKGATVGLPVLTIVEDFLPLELGNLDMVLGMMWLRKQGAMTVDWKE 1009
Query: 197 MEMQFTKDGHQVTLRG 212
+ M F ++ L+G
Sbjct: 1010 LAMTFVVGDSKIVLKG 1025
>gi|52353559|gb|AAU44125.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1474
Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 40/94 (42%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
I TIL DSG++H+F+ F L E ++ G +T+ V ++
Sbjct: 370 PIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 429
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+QG + LL + D +LG WL ++
Sbjct: 430 IQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 463
>gi|21743214|emb|CAD40069.1| OSJNBa0085C10.22 [Oryza sativa Japonica Group]
Length = 1639
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 601 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGDMTAKYYSPAVPIEIQGIPFP 660
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 661 SDLILLDTKNLDVILGMNWLAQFQGVV 687
>gi|255583783|ref|XP_002532644.1| conserved hypothetical protein [Ricinus communis]
gi|223527635|gb|EEF29747.1| conserved hypothetical protein [Ricinus communis]
Length = 462
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 16/116 (13%)
Query: 42 KYTFGHKC--KKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSI 99
+Y GH+C K L ++ G +E + + ++E P T ++ I
Sbjct: 356 RYDPGHRCPNKSLKILCVINGSSEEEEMTKVEQSKEIP--------------TEEVRGKI 401
Query: 100 SKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQ 155
+ +LIDSG++ NF+ + GL P V + NG+++ S G CK V
Sbjct: 402 KSRDIIMLIDSGASRNFISEALLEKIGLTRLPTKSFKVQMGNGDEIDSTGVCKSVN 457
>gi|77554995|gb|ABA97791.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1791
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 729 IHSIPATILFDSGASHSFISMPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 788
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 789 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 821
>gi|32489382|emb|CAE04228.1| OSJNBa0011F23.1 [Oryza sativa Japonica Group]
Length = 1787
Score = 43.1 bits (100), Expect = 0.094, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 46/96 (47%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P + S++ +L DSG++H+F+ F K G K++ + +V + G + +
Sbjct: 746 APDVVMGMFSVNSIPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRAT 805
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V L+++ A +L + D +LG WL
Sbjct: 806 QVCPEVNLRIEEVDFLAKPIVLDSQSLDIILGMDWL 841
>gi|77554515|gb|ABA97311.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1475
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 399 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 458
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 459 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 491
>gi|38344459|emb|CAE04930.2| OSJNBa0017P10.7 [Oryza sativa Japonica Group]
gi|38345444|emb|CAE03296.2| OSJNBb0046P18.12 [Oryza sativa Japonica Group]
Length = 1469
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 366 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 425
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 426 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 458
>gi|77554522|gb|ABA97318.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1398
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 319 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 378
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 379 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 411
>gi|77553962|gb|ABA96758.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1786
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 683 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSSAVPIEI 742
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 743 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVM 775
>gi|77549436|gb|ABA92233.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1483
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 83 ALARVQS-PQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVAN 141
A A QS P + ++ T+L DSG+TH+FL FA G++ +V
Sbjct: 363 AAAEAQSAPDVILGTFPVNSIPATVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTL 422
Query: 142 GEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
G ++ S C ++++ + LL + D +LG WL
Sbjct: 423 GNQVFSTQYCPSATIEIEEVPFPSSLILLESKDLDVILGMDWL 465
>gi|18542904|gb|AAL75746.1|AC091724_19 Putative polyprotein [Oryza sativa Japonica Group]
gi|31430267|gb|AAP52207.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1322
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P + S++ +L DSG++H+F+ F K G K++ + +V + G + +
Sbjct: 345 APDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRAT 404
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
V L+++ A +L + D +LG WL
Sbjct: 405 QIYPEVNLRIEEVDFLAKPIVLDSQSLDIILGMDWLA 441
>gi|38346850|emb|CAD39932.2| OSJNBa0091C12.10 [Oryza sativa Japonica Group]
Length = 1461
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 358 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 417
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 418 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 450
>gi|32492194|emb|CAE03534.1| OSJNBa0061C06.22 [Oryza sativa Japonica Group]
gi|39545591|emb|CAE02835.3| OSJNBa0014F04.1 [Oryza sativa Japonica Group]
Length = 1450
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 341 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTLGGVMTAKYYSPAVPIEI 400
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGA----- 213
QG + LL + D +LG WL ++ D+ + + + Q + A
Sbjct: 401 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV-DYARCTVTLYRGPEQPVVFFAPPTSV 459
Query: 214 TTSELKAIE 222
++SEL IE
Sbjct: 460 SSSELHQIE 468
>gi|14018097|gb|AAK52160.1|AC084831_14 putative polyprotein [Oryza sativa Japonica Group]
gi|108709292|gb|ABF97087.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1475
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 402 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 461
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 462 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 494
>gi|19881755|gb|AAM01156.1|AC113336_8 Putative retroelement [Oryza sativa Japonica Group]
gi|31430462|gb|AAP52371.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1784
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 681 IHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 740
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 741 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 773
>gi|108708196|gb|ABF95991.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1748
Score = 43.1 bits (100), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 645 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 704
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 705 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 737
>gi|449522383|ref|XP_004168206.1| PREDICTED: uncharacterized protein LOC101227928 [Cucumis sativus]
Length = 690
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 33/146 (22%)
Query: 8 RFERLLARAGHLTDKQEAECFISGL------------KDGLRTDVQKYTF----GHKCK- 50
RFE+++A HLT++ E F +GL K R DV G +CK
Sbjct: 508 RFEKMMALVSHLTNEVLLETFFTGLEPMIKVPCRRQSKGKRRADVSWMRISKAGGTRCKA 567
Query: 51 ------KLFLI-----EAEEGD--EPKEHEK-EKDVTQETPA--ISLHALARVQSPQTMR 94
++F++ E E D EP+E E E + A SL+ + S T++
Sbjct: 568 KKLQSMRMFVVDENGSEVEIFDDMEPREEETIELQIAGVVDAAEFSLNLVMGFSSSGTLK 627
Query: 95 LQSSISKASLTILIDSGSTHNFLHHK 120
++ I + + ID +THNF+ H+
Sbjct: 628 MKGIIENREVIVFIDCRATHNFIAHR 653
>gi|77551176|gb|ABA93973.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 714
Score = 43.1 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 46/96 (47%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P + S++ +L DSG++H+F+ F K G K++ + +V + G + +
Sbjct: 446 APDVVMGMFSVNSEPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRAT 505
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V L+++ A +L + D +LG WL
Sbjct: 506 QICPEVNLRIEEVDFLAKPIVLDSQSLDIILGMDWL 541
>gi|58532065|emb|CAE05987.3| OSJNBa0004L19.16 [Oryza sativa Japonica Group]
Length = 1731
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 662 IHSIPATILFDSGASHSFMSVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 721
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 722 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 754
>gi|116317844|emb|CAH65877.1| OSIGBa0160I04.3 [Oryza sativa Indica Group]
Length = 1786
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 683 IHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 742
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 743 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 775
>gi|38568042|emb|CAE05353.3| OSJNBa0065J03.12 [Oryza sativa Japonica Group]
Length = 1599
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 652 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 711
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 712 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 744
>gi|62734409|gb|AAX96518.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550068|gb|ABA92865.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 938
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DS +TH+F+ KF + GL+ E V G TS
Sbjct: 62 APEVVLGTFPVNSIPATVLFDSDATHSFISKKFVGVHGLRKEELSTPMRVHTPGNSSTSV 121
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
V +++Q ++ LL + D +LG WL ++
Sbjct: 122 SYSPSVLIEIQISRFLPNLILLESKDLDVILGMDWLTKFKGVI 164
>gi|242117532|dbj|BAH80015.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1480
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 377 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 436
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 437 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 469
>gi|51091547|dbj|BAD36284.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1620
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 524 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 583
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 584 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 616
>gi|116308878|emb|CAH66013.1| OSIGBa0093M15.3 [Oryza sativa Indica Group]
Length = 1317
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G ++ S C ++
Sbjct: 377 PVNSIPATVLFDSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPGNQVFSTQYCPSATIE 436
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 437 IEEVLFPSSLILLESKDLDVILGIDWL 463
>gi|20177619|gb|AAM14674.1|AC097446_3 Putative polyprotein [Oryza sativa Japonica Group]
gi|22725914|gb|AAN04924.1| Putative polyprotein [Oryza sativa Japonica Group]
gi|110288618|gb|ABB46768.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1433
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 401 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGVVMTAKYYSPAVPIEI 460
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 461 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 493
>gi|32487330|emb|CAE05905.1| OSJNBa0061C08.12 [Oryza sativa Japonica Group]
Length = 1971
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 630 IHSIPATILFDSGASHSFISVPFMGRNQLGVERIRNPLLITTPGGVMTAKYNSPAVPIEI 689
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 690 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 722
>gi|32487701|emb|CAE05378.1| OSJNBa0022F16.2 [Oryza sativa Japonica Group]
gi|38346701|emb|CAE02186.2| OSJNBa0080E14.17 [Oryza sativa Japonica Group]
Length = 1494
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 679 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 738
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 739 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 771
>gi|116310099|emb|CAH67119.1| H0502G05.10 [Oryza sativa Indica Group]
Length = 1826
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 723 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYIPAVPIEI 782
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 783 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 815
>gi|57863932|gb|AAS90688.2| putative polyprotein [Oryza sativa Japonica Group]
Length = 1789
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 686 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 745
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 746 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 778
>gi|78708033|gb|ABB47008.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1804
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F + L E ++ G +T+ V +++QG
Sbjct: 707 TILFDSGASHSFISVPFVGKSQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 766
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 767 SDLILLDTKNLDVILGMNWLAQFQGVV 793
>gi|54291802|gb|AAV32171.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1310
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 82 HALARVQS-PQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVA 140
H A Q+ P + ++ ++L DSG+TH+FL FA G++ +V
Sbjct: 300 HVAAEAQNAPDVVLGTFPVNSIPASVLFDSGATHSFLSKSFASNHGMEFISLGRPLLVNT 359
Query: 141 NGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
G ++ S C ++++ + LL + D +LG WL
Sbjct: 360 PGNQVFSTQYCPSATIEIEEVPFPSSLILLESKDLDVILGMDWL 403
>gi|54287545|gb|AAV31289.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1721
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 5/148 (3%)
Query: 45 FGHKCKKLFLIEAEEGD-EPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKAS 103
F KC K ++G P+ + KDV Q + A + +P + I
Sbjct: 601 FADKCPK---PRRQQGQAPPRSNNGGKDVIQGR-VNHVTAEDVLTTPDVIVGTFLIHSIP 656
Query: 104 LTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQI 163
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 657 ATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPF 716
Query: 164 EAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 717 PSDLILLDTKNLDVILGMNWLAQFQGVV 744
>gi|86371679|gb|ABC94893.1| polyprotein [Oryza australiensis]
Length = 1469
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
SI+ + +L DSG++H+F+ + +K L +V + G +T P C V ++
Sbjct: 370 SINSTLVKVLFDSGASHSFISSQVSKQHHLHQVALKRPMLVHSPGGDITVPHACINVPIR 429
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
++ + +LS + D +LG WL I+
Sbjct: 430 IRDVVFLSNLMVLSPQTIDVILGMDWLTKNNGII 463
>gi|54287623|gb|AAV31367.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1611
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F++ F L E ++ G +T+ V +++
Sbjct: 631 IHSIPATILFDSGASHSFIYVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPVVPIEI 690
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 691 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 723
>gi|52353549|gb|AAU44115.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1717
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL F G++ +V G ++ S C ++
Sbjct: 637 PVNSIPATVLFDSGATHSFLSKSFTSNHGMEVISLERPLLVNTPGNQVFSTQYCPSATIE 696
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL-CTLGSI 190
++ + LL + D +LG WL C G I
Sbjct: 697 IEEVPFPSSLILLESKDLDVILGMDWLSCHRGVI 730
>gi|50300539|gb|AAT73680.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1499
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 402 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 461
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 462 SDLILLDTKNLDVILGMNWLAQFQGVV 488
>gi|38347567|emb|CAE05000.2| OSJNBb0093G06.8 [Oryza sativa Japonica Group]
Length = 1770
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 667 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 726
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 727 QGIPFSSDLILLDTKNLDVILGMNWLAQFQGVV 759
>gi|78708468|gb|ABB47443.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1494
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 401 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 460
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 461 QGIPFPSDLILLGTKNLDVILGMNWLAQFQGVV 493
>gi|77555355|gb|ABA98151.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1281
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ ++L DSG+TH+FL FA G++ +V G +++S C ++
Sbjct: 377 PVNSIPASMLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNPPGNQVSSTQYCPSATIE 436
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 437 IEKVPFPSSLILLESKDLDIILGMDWL 463
>gi|22138463|gb|AAM93447.1| putative polyprotein [Oryza sativa Japonica Group]
gi|78708018|gb|ABB46993.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1499
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 402 TILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 461
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 462 SDLILLDTKNLDVILGMNWLAQFQGVV 488
>gi|38347461|emb|CAD40088.2| OSJNBb0012A12.14 [Oryza sativa Japonica Group]
Length = 1075
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 435 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 494
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 495 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 527
>gi|121501699|gb|ABM55240.1| retrotransposon protein [Beta vulgaris]
Length = 1501
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
SI+ + L DSG+T++F+ K GL LSV + GE + K + L+
Sbjct: 367 SINSVFVKTLFDSGATYSFISPSVLKSLGLVEHESIDLSVSIPTGEVVKCTKLFKNLPLK 426
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
+ G+ + +L D +LG WL
Sbjct: 427 IGGSVFPSELIEFNLGDLDVILGMNWL 453
>gi|57834100|emb|CAE04765.3| OSJNBa0079C19.6 [Oryza sativa Japonica Group]
Length = 1998
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 657 IHSIPATILFDSGASHSFISVPFMGRNQLGVERIRNPLLITTPGGVMTAKYNSPAVPIEI 716
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 717 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 749
>gi|50300512|gb|AAT73655.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1747
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 673 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 732
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 733 SDLILLDTKNLDVILGMNWLAQFQGVV 759
>gi|13129460|gb|AAK13118.1|AC080019_10 Polyprotein [Oryza sativa Japonica Group]
Length = 1781
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 688 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 747
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 748 QGIPFPSDLILLGTKNLDVILGMNWLAQFQGVV 780
>gi|77554650|gb|ABA97446.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1847
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 744 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 803
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 804 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 836
>gi|77555063|gb|ABA97859.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1806
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 718 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 777
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 778 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 810
>gi|18425251|gb|AAL69429.1|AC098565_11 Putative polyprotein [Oryza sativa]
gi|31430202|gb|AAP52148.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1788
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 719 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 778
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 779 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 811
>gi|116311093|emb|CAH68022.1| H0807C06-H0308C08.9 [Oryza sativa Indica Group]
Length = 1804
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 729 IHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 788
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 789 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 821
>gi|50300513|gb|AAT73656.1| unknown protein, similar to polyprotein [Oryza sativa Japonica
Group]
Length = 917
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F++ F L E ++ G +T+ V +++
Sbjct: 631 IHSIPATILFDSGASHSFIYVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPVVPIEI 690
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 691 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 723
>gi|21740445|emb|CAD41630.1| OSJNBa0091D06.6 [Oryza sativa Japonica Group]
Length = 1799
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 696 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYIPAVPIEI 755
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 756 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 788
>gi|55168124|gb|AAV43991.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1499
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 417 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 476
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 477 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 509
>gi|50300545|gb|AAT73686.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1498
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 401 TILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 460
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 461 SDLILLDTKNLDVILGMNWLAQFQGVV 487
>gi|77555643|gb|ABA98439.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1777
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 692 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 751
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 752 SDLILLDTKNLDVILGMNWLAQFQGVV 778
>gi|242041743|ref|XP_002468266.1| hypothetical protein SORBIDRAFT_01g042706 [Sorghum bicolor]
gi|241922120|gb|EER95264.1| hypothetical protein SORBIDRAFT_01g042706 [Sorghum bicolor]
Length = 655
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 1 MVSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQ 41
V+EYQ RF+ LLARAG L + Q + F GL L DV+
Sbjct: 548 FVAEYQDRFQALLARAGRLDESQRVQLFTGGLLPPLSIDVR 588
>gi|116308884|emb|CAH66018.1| OSIGBa0105N24.2 [Oryza sativa Indica Group]
Length = 1608
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
T+L DSG+TH+FL FA G++ +V G ++ S C ++++
Sbjct: 553 TVLFDSGATHSFLSKSFASNQGMEVISLGRPLLVNTPGNQVFSTQYCPSATIEIEEVPFP 612
Query: 165 AYFYLLSLEGCDAVLGAQWL 184
+ LL + D +LG WL
Sbjct: 613 SSLILLESKDRDVILGMDWL 632
>gi|62733085|gb|AAX95202.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549495|gb|ABA92292.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1795
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 698 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 757
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 758 SDLILLDTKNLDVILGMNWLAQFQGVV 784
>gi|58532064|emb|CAD40396.3| OSJNBa0004L19.15 [Oryza sativa Japonica Group]
Length = 1821
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 718 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 777
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 778 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 810
>gi|38347259|emb|CAE05306.2| OSJNBa0056L23.4 [Oryza sativa Japonica Group]
Length = 1785
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 688 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 747
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 748 SDLILLDTKNLDVILGMNWLAQFQGVV 774
>gi|108862685|gb|ABA98546.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1800
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 729 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 788
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKAIE 222
+ LL + D +LG WL ++ D + + + Q + A + +K+ E
Sbjct: 789 SDLILLDTKNLDVILGMNWLAQFQGVV-DCARRTVTLYRGPEQPVVFFAPPTSIKSSE 845
>gi|108862284|gb|ABA96071.2| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
gi|215767385|dbj|BAG99613.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 282
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 41 QKYTFGHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPA-------ISLHALARVQSP--Q 91
+KY G C+K F+IE + E E + T ISLHALA +++
Sbjct: 107 EKYVSGQHCEKSFIIEVISFPDDTEGEDDPPPAANTILADAGKLLISLHALAGIRALMFN 166
Query: 92 TMRLQSSISKASLTILIDSGSTHNFLHHKFAKI 124
T+++ + + L+DSGS HNFL A +
Sbjct: 167 TIKVCACVGTVDYLALLDSGSMHNFLSETVAHV 199
>gi|62734325|gb|AAX96434.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550057|gb|ABA92854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1409
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 405 IHSIPATILFDSGASHSFISVPFMGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 464
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 465 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 497
>gi|77554997|gb|ABA97793.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1435
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 409 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTTKYYSPAVPIEIQGIPFP 468
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 469 SDLILLDTKNLDVILGMNWLAQFQGVV 495
>gi|116317857|emb|CAH65888.1| OSIGBa0096I22.1 [Oryza sativa Indica Group]
Length = 1635
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 645 TILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 704
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 705 SDLILLDTKNLDVILGMNWLAQFQGVV 731
>gi|53981184|gb|AAV24824.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1661
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 583 TILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 642
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 643 SDLILLDTKNLDVILGMNWLAQFQGVV 669
>gi|50300503|gb|AAT73646.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1764
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 667 TILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 726
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 727 SDLILLDTKNLDVILGMNWLAQFQGVV 753
>gi|38347553|emb|CAD39388.2| OSJNBb0016B03.9 [Oryza sativa Japonica Group]
Length = 1092
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 61 IHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 120
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 121 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 153
>gi|22725911|gb|AAN04921.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31430214|gb|AAP52160.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1786
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 689 TILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 748
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 749 SDLILLDTKNLDVILGMNWLAQFQGVV 775
>gi|57834136|emb|CAE05577.3| OSJNBa0032N05.5 [Oryza sativa Japonica Group]
Length = 1790
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 693 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 752
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 753 SDLILLDTKNLDVILGMNWLAQFQGVV 779
>gi|54287528|gb|AAV31272.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54287632|gb|AAV31376.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1784
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 687 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 746
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 747 SDLILLDTKNLDVILGMNWLAQFQGVV 773
>gi|77556493|gb|ABA99289.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1805
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 708 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 767
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 768 SDLILLDTKNLDVILGMNWLAQFQGVV 794
>gi|50300553|gb|AAT73694.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1778
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 690 TILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 749
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 750 SDLILLDTKNLDVILGMNWLAQFQGVV 776
>gi|58531955|emb|CAE03064.2| OSJNBa0089E12.2 [Oryza sativa Japonica Group]
Length = 1764
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 667 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 726
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 727 SDLILLDTKNLDVILGMNWLAQFQGVV 753
>gi|38344634|emb|CAE05067.2| OSJNBa0094P09.6 [Oryza sativa Japonica Group]
Length = 1803
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 706 TILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 765
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 766 SDLILLDTKNLDVILGMNWLAQFQGVV 792
>gi|77552428|gb|ABA95225.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1795
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 698 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 757
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 758 SDLILLDTKNLDVILGMNWLAQFQGVV 784
>gi|22711558|gb|AAM01161.2|AC113336_13 Putative retroelement [Oryza sativa Japonica Group]
gi|78707943|gb|ABB46918.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1661
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G + S C V ++
Sbjct: 689 PVNSIPATVLFDSGATHSFLCKSFAIKHGMEVVSLGRPLLVNTPGNQAFSTRYCPSVTIE 748
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 749 IEEVPFPSSLILLESKDLDVILGMDWL 775
>gi|13992680|gb|AAK51574.1|AC022352_10 Putative retroelement [Oryza sativa Japonica Group]
gi|31431004|gb|AAP52842.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1810
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 713 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 772
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 773 SDLILLDTKNLDVILGMNWLAQFQGVV 799
>gi|22725935|gb|AAN04945.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431096|gb|AAP52927.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1825
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 728 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 787
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 788 SDLILLDTKNLDVILGMNWLAQFQGVV 814
>gi|70720828|emb|CAI44646.2| OSJNBa0057M08.21 [Oryza sativa Japonica Group]
Length = 1202
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 606 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 665
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 666 SDLILLDTKNLDVILGMNWLAQFQGVV 692
>gi|108708200|gb|ABF95995.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1804
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 707 TILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 766
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 767 SDLILLDTKNLDVILGMNWLAQFQGVV 793
>gi|78708035|gb|ABB47010.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1796
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 699 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 758
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 759 SDLILLDTKNLDVILGMNWLAQFQGVV 785
>gi|90265089|emb|CAH67761.1| H0124E07.8 [Oryza sativa Indica Group]
Length = 1427
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 461 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 520
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 521 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 553
>gi|58532066|emb|CAI44654.1| OSJNBa0004L19.17 [Oryza sativa Japonica Group]
Length = 1370
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 714 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 773
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 774 SDLILLDTKNLDVILGMNWLAQFQGVV 800
>gi|58532097|emb|CAD40058.3| OSJNBa0085C10.10 [Oryza sativa Japonica Group]
Length = 1785
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 688 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 747
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 748 SDLILLDTKNLDVILGMNWLAQFQGVV 774
>gi|78708041|gb|ABB47016.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1849
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 752 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 811
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 812 SDLILLDTKNLDVILGMNWLAQFQGVV 838
>gi|77555686|gb|ABA98482.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1803
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 706 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 765
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 766 SDLILLDTKNLDVILGMNWLAQFQGVV 792
>gi|77551513|gb|ABA94310.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1762
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%)
Query: 104 LTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQI 163
+ +L DSG+TH+FL F G++ E +V + S R +++++Q
Sbjct: 753 ILVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSIRIEIQEVPF 812
Query: 164 EAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
A LL + D +LG WL ++ ++ + + DG VT+
Sbjct: 813 LANLILLESKDLDIILGMDWLARYKGMIDCANRKVILTSNDGRVVTV 859
>gi|54287622|gb|AAV31366.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1826
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 752 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 811
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 812 SDLILLDTKNLDVILGMNWLAQFQGVV 838
>gi|53981932|gb|AAV25050.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1804
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 707 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 766
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 767 SDLILLDTKNLDVILGMNWLAQFQGVV 793
>gi|90265240|emb|CAH67693.1| H0624F09.1 [Oryza sativa Indica Group]
gi|90399167|emb|CAJ86096.1| H0818H01.18 [Oryza sativa Indica Group]
Length = 1805
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 708 TILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 767
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 768 SDLILLDTKNLDVILGMNWLAQFQGVV 794
>gi|55168118|gb|AAV43985.1| putative polyprotein [Oryza sativa Japonica Group]
gi|55168194|gb|AAV44060.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1772
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 682 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 741
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 742 SDLILLDTKNLDVILGMNWLAQFQGVV 768
>gi|52353726|gb|AAU44292.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1816
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 719 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 778
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 779 SDLILLDTKNLDVILGMNWLAQFQGVV 805
>gi|77556441|gb|ABA99237.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1790
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 693 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 752
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 753 SDLILLDTKNLDVILGMNWLAQFQGVV 779
>gi|108707966|gb|ABF95761.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1269
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA ++ E +V + S R V++++
Sbjct: 333 VNLVPATVLFDSGATHSFLSMSFAGNHVMEVEDLRRPLMVNTPSNQALSLQRSPSVRIEI 392
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSEL 218
+ A LL + D +LG WL ++ ++ + DG VT+ ++ L
Sbjct: 393 LRSLFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSDDGRVVTIHALSSESL 452
Query: 219 KA 220
++
Sbjct: 453 RS 454
>gi|108862403|gb|ABA97246.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1225
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL+DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 163 IHSIPATILLDSGASHSFISVPFMGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 222
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 223 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 255
>gi|108708189|gb|ABF95984.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1804
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 707 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 766
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 767 SDLILLDTKNLDVILGMNWLAQFQGVV 793
>gi|108708199|gb|ABF95994.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1534
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 437 TILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAQYYSPAVPIEIQGIPFP 496
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 497 SDLILLDTKNLDVILGMNWLAQFQGVV 523
>gi|32489197|emb|CAE04382.1| OSJNBa0027G07.24 [Oryza sativa Japonica Group]
gi|38347091|emb|CAE02563.2| OSJNBa0006M15.6 [Oryza sativa Japonica Group]
Length = 1635
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 664 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 723
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 724 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 756
>gi|22539073|gb|AAN01245.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431331|gb|AAP53126.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1785
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 688 TILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 747
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 748 SDLILLDTKNLDVILGMNWLAQFQGVV 774
>gi|22725933|gb|AAN04943.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431094|gb|AAP52925.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1803
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 706 TILFDSGASHSFISVSFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 765
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 766 SDLILLDTKNLDVILGMNWLAQFQGVV 792
>gi|50897320|gb|AAT85771.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108709111|gb|ABF96906.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1169
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 80 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 139
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 140 QGIPFPSDLILLDTKNLDVILGMNWLAQFQCVV 172
>gi|78708125|gb|ABB47100.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1821
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 724 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 783
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 784 SDLILLDTKNLDVILGMNWLAQFQGVV 810
>gi|77555397|gb|ABA98193.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1759
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 694 TILFDSGASHSFISVSFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 753
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 754 SDLILLDTKNLDVILGMNWLAQFQGVV 780
>gi|20043037|gb|AAM08845.1|AC113337_9 Putative retroelement [Oryza sativa Japonica Group]
Length = 1728
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 702 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 761
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 762 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 794
>gi|110288682|gb|AAP52358.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1707
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 681 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 740
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 741 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 773
>gi|54287627|gb|AAV31371.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1820
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 723 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 782
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 783 SDLILLDTKNLDVILGMNWLAQFQGVV 809
>gi|21741597|emb|CAD39713.1| OSJNBa0052P16.18 [Oryza sativa Japonica Group]
Length = 1804
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 707 TILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 766
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 767 SDLILLDTKNLDVILGMNWLAQFQGVV 793
>gi|77556043|gb|ABA98839.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1756
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 706 TILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 765
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 766 SDLILLDTKNLDVILGMNWLAQFQGVV 792
>gi|48926660|gb|AAT47449.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1943
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 693 TILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 752
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 753 SDLILLDTKNLDVILGMNWLAQFQGVV 779
>gi|21743213|emb|CAD40068.1| OSJNBa0085C10.21 [Oryza sativa Japonica Group]
Length = 1825
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 728 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 787
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 788 SDLILLDTKNLDVILGMNWLAQFQGVV 814
>gi|62734591|gb|AAX96700.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550164|gb|ABA92961.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1071
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 88 QSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTS 147
+P + ++ S T+L DSG+TH+F FA G++ VV+ G + +
Sbjct: 462 NAPDVVLGMFPVNSISATVLFDSGATHSFFSKSFAGNHGME---------VVSLGRPIIA 512
Query: 148 PGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL-CTLGSI 190
V ++++G + LL E D +LG WL C G I
Sbjct: 513 ---NTPVFIEIEGISFPSSLILLESEEFDVILGMDWLTCHRGVI 553
>gi|20177631|gb|AAM14686.1|AC097446_15 Putative polyprotein [Oryza sativa Japonica Group]
gi|31430230|gb|AAP52176.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1859
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 815 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYFSPAVPIEI 874
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 875 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 907
>gi|38344714|emb|CAE05256.2| OSJNBb0115I09.18 [Oryza sativa Japonica Group]
Length = 1134
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 175 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 234
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 235 QGIPFPSDLILLDSKNLDVILGMNWLAQFQGVV 267
>gi|110288804|gb|ABG65986.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1840
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 743 TILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 802
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 803 SDLILLDTKNLDVILGMNWLAQFQGVV 829
>gi|77555127|gb|ABA97923.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1758
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 695 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 754
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 755 SDLILLDTKNLDVILGMNWLAQFQGVV 781
>gi|116311097|emb|CAH68025.1| OSIGBa0136O08-OSIGBa0153H12.3 [Oryza sativa Indica Group]
Length = 1826
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 729 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 788
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 789 SDLILLDTKNLDVILGMNWLAQFQGVV 815
>gi|77549443|gb|ABA92240.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1319
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+FL FA G++ +V G + S C ++
Sbjct: 377 PVNSIPATVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQAFSTQYCPSATIE 436
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 437 IEEVPFPSSLILLESKDLDVILGMDWL 463
>gi|20503033|gb|AAM22721.1|AC092388_5 putative polyprotein [Oryza sativa Japonica Group]
gi|31431879|gb|AAP53591.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1784
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 719 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 778
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 779 QGIPFPSDLILLDSKNLDVILGMNWLAQFQGVV 811
>gi|110288767|gb|AAP52585.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1797
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 700 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 759
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 760 SDLILLDTKNLDVILGMNWLAQFQGVV 786
>gi|13992691|gb|AAK51585.1|AC022352_21 Putative retroelement [Oryza sativa Japonica Group]
Length = 1862
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 765 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 824
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 825 SDLILLDTKNLDVILGMNWLAQFQGVV 851
>gi|22857594|gb|AAN09868.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1802
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 705 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 764
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 765 SDLILLDTKNLDVILGMNWLAQFQGVV 791
>gi|62732761|gb|AAX94880.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549451|gb|ABA92248.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1849
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 752 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 811
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 812 SDLILLDTKNLDVILGMNWLAQFQGVV 838
>gi|147798060|emb|CAN62942.1| hypothetical protein VITISV_034196 [Vitis vinifera]
Length = 945
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 106 ILIDSGSTHNFLHHKFAKITGLKSE-PGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
+L D+G+TH+F+ A GLK E LL + G CKG + L ++
Sbjct: 169 VLFDTGATHSFISASCANTLGLKMEMVENLLLIXSPMGTNSRXDRICKGCVITLXNRALK 228
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+L + G D +LG WL +++
Sbjct: 229 VDLRILDMIGYDVILGMDWLTVYRALI 255
>gi|77555576|gb|ABA98372.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1800
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 703 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 762
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 763 SDLILLDTKNLDVILGMNWLAQFQGVV 789
>gi|62733127|gb|AAX95244.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|62734031|gb|AAX96140.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550685|gb|ABA93482.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1567
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 9/150 (6%)
Query: 45 FGHKCKKLFLIEAEEGD-EPKEHEKEKDVTQETPAISLHALAR--VQSPQTMRLQSSISK 101
F KC K ++G P+ + KDV + H +A + +P + I
Sbjct: 710 FADKCPK---PRRQQGQAPPRSNNGGKDVIR---GRVNHVMAEDVLTTPDVIFGTFPIHS 763
Query: 102 ASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGT 161
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 764 IPATILFDSGASHSFMSVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSHAVPIEIQGI 823
Query: 162 QIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 824 PFLSDLILLDTKNLDVILGMNWLAQFQGVV 853
>gi|108864166|gb|ABA92236.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1636
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 719 IHSIPATILFDSGASHSFISVTFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 778
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 779 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 811
>gi|54291803|gb|AAV32172.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1820
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V + +QG +
Sbjct: 723 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIDIQGIPLP 782
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 783 SDLILLDTKNLDVILGMNWLAQFQGVV 809
>gi|77555003|gb|ABA97799.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1757
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V + +
Sbjct: 719 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPMDI 778
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 779 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 811
>gi|50897341|gb|AAT85792.1| reverse transcriptase (RNA-dependent DNA polymerase) family protein
[Oryza sativa Japonica Group]
gi|108709088|gb|ABF96883.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1708
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 683 IYSIPATILFDSGASHSFISVPFVGRIQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 742
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 743 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 775
>gi|110289632|gb|ABG66286.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1759
Score = 42.0 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 45/96 (46%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P + S++ +L DSG++H+F+ F K G K++ + +V G + +
Sbjct: 654 APDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHFPGRNIRAT 713
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C V L+++ A +L + D +LG WL
Sbjct: 714 QICPEVNLRIEEVDFLAKPIVLDSQSLDIILGMDWL 749
>gi|18425257|gb|AAL69435.1|AC098565_17 Putative polyprotein [Oryza sativa]
gi|22725905|gb|AAN04915.1| Putative polyprotein [Oryza sativa Japonica Group]
gi|31430208|gb|AAP52154.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1156
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 324 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 383
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG +WL ++
Sbjct: 384 QGILFPSDLILLDTKNLDVILGMKWLAQFQGVV 416
>gi|38346257|emb|CAE02079.2| OSJNBa0074B10.7 [Oryza sativa Japonica Group]
Length = 1287
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 307 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAMYYSPAVPIEIQGIPFP 366
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 367 SDLILLDTKNLDVILGMNWLAQFQGVV 393
>gi|409039290|gb|EKM48932.1| hypothetical protein PHACADRAFT_202215 [Phanerochaete carnosa
HHB-10118-sp]
Length = 252
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 27/115 (23%)
Query: 91 QTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGR 150
+TMR+ I+ ILID+GST + + F K GLK P L+SP
Sbjct: 88 KTMRVYLKINNFEAYILIDTGSTIDTVSPDFTKFAGLKPFP-------------LSSPIT 134
Query: 151 ----CKGVQLQLQ----------GTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
C G+QL++ YF + SL+ D ++G Q + +G +L
Sbjct: 135 LQLGCSGLQLKVNYGVWLPIPIGSAMYNFYFDVASLDHYDLIIGTQIMQDVGMVL 189
>gi|78708466|gb|ABB47441.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1802
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 733 IHSIPATILFDSGASHSFISVPFMGRNQLGIERLRNPLLITTPGGVMTAKYYSPAVPIEI 792
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 793 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 825
>gi|50878387|gb|AAT85162.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1152
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 730 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 789
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 790 SDLILLDTKNLDVILGMNWLAQFQGVV 816
>gi|13129464|gb|AAK13122.1|AC080019_14 Polyprotein [Oryza sativa Japonica Group]
Length = 2017
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 973 IHSIPATILFDSGASHSFISVPFMGRNQLGIERLRNPLLITTPGGVMTAKYYSPAVPIEI 1032
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 1033 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGVV 1065
>gi|8778789|gb|AAF79797.1|AC020646_20 T32E20.30 [Arabidopsis thaliana]
Length = 1397
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 149 GRCKGVQLQL-----QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203
G C V + L Q ++ +F L L D +LG WL TLG ++++ E+ F
Sbjct: 404 GLCDKVTMTLPVGCGQELELTTHFITLDLGPVDVILGIAWLRTLGDCKVNWERHELSFLY 463
Query: 204 DGHQVTLRG 212
G VTLRG
Sbjct: 464 HGRTVTLRG 472
>gi|294945884|ref|XP_002784873.1| retrovirus polyprotein, putative [Perkinsus marinus ATCC 50983]
gi|239898118|gb|EER16669.1| retrovirus polyprotein, putative [Perkinsus marinus ATCC 50983]
Length = 1592
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 14/139 (10%)
Query: 87 VQSP-QTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKL 145
VQ P T+ L+ + L LID+G+ +N++ A+ GL+ P L +A L
Sbjct: 544 VQKPGPTIFLRHDTCPSPLRCLIDTGAFYNYIPSALAEKFGLELRP---LDEDMAPYVIL 600
Query: 146 TSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL-WDFDKMEMQFTK- 203
GR + G+ I F +L E C A+LG +C +G L + D + + K
Sbjct: 601 ADQGRAMLLGKVKLGSTI---FRVLRSEACHAILGVVSMCEMGITLSFKTDGVRGRLVKV 657
Query: 204 -----DGHQVTLRGATTSE 217
DGHQ+ L A+ +
Sbjct: 658 SIKKPDGHQIQLTAASAGD 676
>gi|38344635|emb|CAE05068.2| OSJNBa0094P09.7 [Oryza sativa Japonica Group]
Length = 1804
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 707 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGILFP 766
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 767 SDLILLDTKNLDVILGMNWLAQFQGVV 793
>gi|38567665|emb|CAE75948.1| B1159F04.11 [Oryza sativa Japonica Group]
Length = 1679
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 3/147 (2%)
Query: 45 FGHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASL 104
F KC K + + P+ + KDVT+ + A + +P + I
Sbjct: 653 FADKCPKPRRQQGQA--PPRSNNGGKDVTRGR-VNHVTAEDVLTTPDVIVGTFLIHSVPA 709
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
T L DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 710 TTLFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 769
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 770 SDLILLDTKNLDVILGMNWLAQFQGVV 796
>gi|38347631|emb|CAE05227.2| OSJNBa0011K22.9 [Oryza sativa Japonica Group]
Length = 1699
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 3/147 (2%)
Query: 45 FGHKCKKLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASL 104
F KC K + + P+ + KDVT+ + A + +P + I
Sbjct: 673 FADKCPKPRRQQGQA--PPRSNNGGKDVTRGR-VNHVTAEDVLTTPDVIVGTFLIHSVPA 729
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
T L DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 730 TTLFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 789
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 790 SDLILLDTKNLDVILGMNWLAQFQGVV 816
>gi|13129458|gb|AAK13116.1|AC080019_8 polyprotein [Oryza sativa Japonica Group]
Length = 2162
Score = 41.6 bits (96), Expect = 0.24, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 46/103 (44%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ T+L DSG+TH+F+ KF + GL+ E V G TS
Sbjct: 988 APEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTPGNSSTSV 1047
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
V +++Q A LL + D +LG WL ++
Sbjct: 1048 SFSPSVLIEIQRLPFLANLILLESKYLDVILGMDWLTKFKGVI 1090
>gi|58532079|emb|CAE04985.3| OSJNBa0057M08.11 [Oryza sativa Japonica Group]
Length = 1664
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLK-SEPGCLLSVVVANGEKLTSPGRCKGVQL 156
++ T+L DSG+ H+FL FA G++ E L V + + L+S R V++
Sbjct: 866 PVNSVPATVLFDSGAMHSFLSMSFAGNQGMEVKELRRPLMVSTPSNQALSS-QRSPSVRI 924
Query: 157 QLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
++QG A LL + D +LG C G ++
Sbjct: 925 EIQGVPFLANLILLESKDLDVILGMD--CNDGRVV 957
>gi|20451036|gb|AAM22007.1|AC093178_2 Putative polyprotein [Oryza sativa Japonica Group]
gi|31430824|gb|AAP52683.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1229
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 725 TILFDSGASHSFVSVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 784
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 785 SDLILLDTKNLDVILGMNWLAQFQVVV 811
>gi|326672934|ref|XP_003199760.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1427
Score = 41.6 bits (96), Expect = 0.25, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 77 PAISLHAL-ARVQSPQTMR--LQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGC 133
P++S+ + +P T + L + S S T LIDSGS NF+ H + L++E
Sbjct: 275 PSVSVFSFDIEKMNPLTTKVLLTTQSSSVSATALIDSGSAGNFISHSLCRQLHLRTEAST 334
Query: 134 LLSVVVANGEKLTSPGR----CKGVQLQLQGTQIEAYFYLLSLEGC--DAVLGAQWLCTL 187
+ + + S R C+ V LQ+ E +L+ LEG D +LG WL
Sbjct: 335 HIYQIQPITNNIKSQARIHRKCEPVSLQIGWLHKEDIQFLV-LEGATMDIILGRPWLVKH 393
Query: 188 GSIL 191
IL
Sbjct: 394 DPIL 397
>gi|21672037|gb|AAM74399.1|AC119149_14 Putative retroelement [Oryza sativa Japonica Group]
gi|31431043|gb|AAP52881.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1821
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 724 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPTVPIEIQGIPFP 783
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 784 SDLILLDTKNLDVILGMNWLAQFQGVV 810
>gi|62734416|gb|AAX96525.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550230|gb|ABA93027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1506
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%)
Query: 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSP 148
+P+ + ++ IL DSG+TH+F+ +FA L + V +T+
Sbjct: 491 APEVILGTFPVNSTPTVILFDSGATHSFISKRFAGAHELSLVKLKIPMRVHTPRGGMTTT 550
Query: 149 GRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
C + +++QG A LL + D +LG WL
Sbjct: 551 HYCPSMTVEIQGLIFPANLILLESKDLDVILGMDWL 586
>gi|147828587|emb|CAN59996.1| hypothetical protein VITISV_020887 [Vitis vinifera]
Length = 701
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 106 ILIDSGSTHNFLHHKFAKITGLKSE-PGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
+L D+G+TH+F+ A GLK+E LL + G CKG + L +
Sbjct: 11 VLFDTGATHSFISASCANALGLKTERVENLLLIESPMGMNXRVDRICKGCVITLADRALN 70
Query: 165 AYFYLLSLEGCDAVLGAQWL 184
+L + G D +LG WL
Sbjct: 71 VDLRILDMXGYDVILGMDWL 90
>gi|242117516|dbj|BAH79999.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1374
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 409 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 468
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ L+ + D +LG WL ++
Sbjct: 469 SDLILVDTKNLDVILGMNWLAQFQGVV 495
>gi|110288765|gb|ABG65969.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1502
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E + G +T+ V +++QG
Sbjct: 405 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLTTTPGGVMTAKYYSPAVPIEIQGIPFP 464
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 465 SDLILLDTKNLDVILGMNWLAQFQGVV 491
>gi|326670751|ref|XP_003199285.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1427
Score = 41.2 bits (95), Expect = 0.30, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 77 PAISLHAL-ARVQSPQTMR--LQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGC 133
P++S+ + +P T + L + S S T LIDSGS NF+ H + L++E
Sbjct: 275 PSVSVFSFDIEKMNPLTTKVLLTTHSSSVSATALIDSGSAGNFISHSLCRQLHLRTEAST 334
Query: 134 LLSVVVANGEKLTSPGR----CKGVQLQLQGTQIEAYFYLLSLEGC--DAVLGAQWLCTL 187
+ + + S R C+ V LQ+ E +L+ LEG D +LG WL
Sbjct: 335 HIYQIQPITNNIKSQARIHRKCEPVNLQIGWLHKEDIQFLV-LEGATMDIILGRPWLVKH 393
Query: 188 GSIL 191
IL
Sbjct: 394 DPIL 397
>gi|18652523|gb|AAL77156.1|AC091732_7 Putative polyprotein [Oryza sativa Japonica Group]
gi|21672107|gb|AAM74469.1|AC124213_27 Putative retroelement [Oryza sativa Japonica Group]
gi|31431768|gb|AAP53494.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 999
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 150 RCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVT 209
+CK VQ QG F +L+L G D +LG +W IL D+ K + FT +VT
Sbjct: 359 KCKEVQTT-QGQTFVTDFKILALGGYDMILGMEWPEAFSPILVDWQKKTLNFTYQQQRVT 417
Query: 210 LRG 212
L G
Sbjct: 418 LTG 420
>gi|326674339|ref|XP_003200115.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1427
Score = 41.2 bits (95), Expect = 0.31, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 77 PAISLHAL-ARVQSPQTMR--LQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGC 133
P++S+ + +P T + L + S S T LIDSGS NF+ H + L++E
Sbjct: 275 PSVSVFSFDIEKMNPLTTKVLLTTHSSSVSATALIDSGSAGNFISHSLCRQLHLRTEAST 334
Query: 134 LLSVVVANGEKLTSPGR----CKGVQLQLQGTQIEAYFYLLSLEGC--DAVLGAQWLCTL 187
+ + + S R C+ V LQ+ E +L+ LEG D +LG WL
Sbjct: 335 HIYQIQPITNNIKSQARIHRKCEPVSLQIGWLHKEDIQFLV-LEGATMDIILGRPWLVKH 393
Query: 188 GSIL 191
IL
Sbjct: 394 DPIL 397
>gi|326681142|ref|XP_003201727.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like, partial [Danio rerio]
Length = 1317
Score = 41.2 bits (95), Expect = 0.32, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 77 PAISLHAL-ARVQSPQTMR--LQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGC 133
P++S+ + +P T + L + S S T LIDSGS NF+ H + L++E
Sbjct: 206 PSVSVFSFDIEKMNPLTTKVLLTTHSSSVSATALIDSGSAGNFISHSLCRQLHLRTEAST 265
Query: 134 LLSVVVANGEKLTSPGR----CKGVQLQLQGTQIEAYFYLLSLEGC--DAVLGAQWLCTL 187
+ + + S R C+ V LQ+ E +L+ LEG D +LG WL
Sbjct: 266 HIYQIQPITNNIKSQARIHRKCEPVSLQIGWLHKEDIQFLV-LEGATMDIILGRPWLVKH 324
Query: 188 GSIL 191
IL
Sbjct: 325 DPIL 328
>gi|54287531|gb|AAV31275.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54287635|gb|AAV31379.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1417
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H F+ F L E ++ G +T+ V +++QG
Sbjct: 175 TILFDSGASHWFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 234
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 235 SDLILLDTKNLDVILGMNWLAQFQGVV 261
>gi|21743218|emb|CAD40073.1| OSJNBa0085C10.26 [Oryza sativa Japonica Group]
Length = 561
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ T+L DSG+TH+F+ KF + GL+ E V G TS + ++
Sbjct: 294 PVNSVPSTVLFDSGATHSFISKKFVGMHGLRKEELSTPMRVHTPGNSSTSVSYSPSMLIE 353
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+Q + A L + D +LG WL ++
Sbjct: 354 IQRSPFLANLILHESKDQDVILGMDWLTKFKGVI 387
>gi|22857586|gb|AAN09860.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1820
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E + G +T+ V +++QG
Sbjct: 723 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLTTTPGGVMTAKYYSPAVPIEIQGIPFP 782
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 783 SDLILLDTKNLDVILGMNWLAQFQGVV 809
>gi|359372825|gb|AEV42258.1| hypothetical protein [Beta vulgaris]
Length = 1553
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
SI+ + +L DSG++ +F+ H + L + +V+ +GE + R V L+
Sbjct: 400 SINSTPVKVLFDSGASLSFIAHATVRNLTLVESESISMPIVIPSGETVNCSKRFLKVPLK 459
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCT-LGSILWDFDKMEMQFTKDGHQVTLR 211
+ + +L D +LG WL + I D K+E++ G +V+ R
Sbjct: 460 IGEGYFPSDLIEFNLSNLDIILGMDWLGKYMARIDCDAQKVELK-DPSGKRVSYR 513
>gi|77555314|gb|ABA98110.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1226
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ ++L DSG+TH+FL FA G++ +V G ++ S C ++
Sbjct: 375 PVNSIPASVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTLGNQVFSTQYCPSATIE 434
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWL 184
++ + LL + D +LG WL
Sbjct: 435 IEEVPFPSSLILLESKDLDVILGMDWL 461
>gi|108862564|gb|ABA97616.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1423
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 701 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPTVPIEI 760
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG + LL + D +LG WL ++
Sbjct: 761 QGIPFPSDLILLDTKNLDVILGMNWLAQFQGLV 793
>gi|270356908|gb|ACZ80693.1| putative retrotransposon nucleocapsid protein [Filobasidiella
depauperata]
Length = 1481
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 84 LARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKF---AKITGLKSEPGCLLSVVVA 140
+ ++++P+ M ++ + + +IDSG+T+NF++ F IT ++ E L V+
Sbjct: 271 IQKMENPKQMTMEYNKERYETFAMIDSGATNNFINSSFLDKTNITKIQKEHPVTLQVIDG 330
Query: 141 NGEK------LTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLG-SILWD 193
K +T+P + + QG F + S+ +LG WL SI W
Sbjct: 331 RPIKSGAVTHMTAP-----ISMTAQGHSETISFDITSIGAYPIILGIPWLTKHNPSISWA 385
Query: 194 FDKMEM 199
K+E
Sbjct: 386 TKKLEF 391
>gi|255577860|ref|XP_002529803.1| conserved hypothetical protein [Ricinus communis]
gi|223530714|gb|EEF32585.1| conserved hypothetical protein [Ricinus communis]
Length = 82
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%)
Query: 74 QETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGC 133
QE+ ISLHAL +P ++++ + K SL ILIDSG+T ++L A K+
Sbjct: 8 QESNHISLHALEGKVTPTILKIKETAGKQSLLILIDSGNTRSYLATLIASEMKCKTITAS 67
Query: 134 LLSVVVANGEKLTS 147
+ V +G KL S
Sbjct: 68 PIIVASTSGHKLVS 81
>gi|62733376|gb|AAX95493.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|62734610|gb|AAX96719.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550245|gb|ABA93042.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1497
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 612 IHSIPATILFDSGASHSFISVPFMGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 671
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
QG LL D +LG WL ++
Sbjct: 672 QGIPFPLDLILLDTNNLDVILGMNWLAQFQGVV 704
>gi|338808432|gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexicana]
Length = 1604
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 19/126 (15%)
Query: 69 EKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLK 128
E + QETP + + T + S I++ +L D+G+TH+F+ + + L
Sbjct: 484 EAEAVQETPDMIVG---------TFPVDSHIAE----VLFDTGATHSFITASWVEAHNL- 529
Query: 129 SEPGCLLSVVV---ANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
P +S + + G ++ + C V ++++G A ++ +G D +LG WL
Sbjct: 530 --PITTMSTPIQIDSAGGRIRADSICLNVSVEIRGIAFPANLIVMGTQGIDVILGMNWLD 587
Query: 186 TLGSIL 191
+++
Sbjct: 588 KYQAVI 593
>gi|108862432|gb|ABA97314.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1219
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 93 MRLQSSISKASLTILIDSGSTHNFLHHKFAK-ITGLKS-EPGCLLSVVVANGEKLTSPGR 150
MR+ + + IL+DSGST +F+ K A+ + G+ + EP + V VANG LT
Sbjct: 398 MRMLGYVQGKEVLILVDSGSTTSFITSKIAQTLQGVVTLEPP--VQVKVANGSILTCLSS 455
Query: 151 CKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
+ QG +L+L D +LG WL
Sbjct: 456 VLRCEWMTQGWVFYTDLKVLNLGSYDIILGMDWL 489
>gi|77555928|gb|ABA98724.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1269
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 67 EKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFA-KIT 125
EK + E IS A+ +S T+RLQ I + + +L+DSGSTH+F+ + A KI
Sbjct: 388 EKASETVSEVCQISKEAMLGTESSGTLRLQGLIQQYEIMMLVDSGSTHSFISEEMASKIR 447
Query: 126 G 126
G
Sbjct: 448 G 448
>gi|326673785|ref|XP_003199991.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1427
Score = 40.8 bits (94), Expect = 0.47, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 77 PAISLHALA-RVQSPQTMR--LQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGC 133
P++S+ + +P T + L + S S T LIDSGS NF+ H + L++E
Sbjct: 275 PSVSVFSFDFEKMNPLTTKVLLTTHSSSVSATALIDSGSAGNFISHSLCRQFHLRTEAST 334
Query: 134 LLSVVVANGEKLTSPGR----CKGVQLQLQGTQIEAYFYLLSLEGC--DAVLGAQWLCTL 187
+ + + S R C+ V LQ+ E +L+ LEG D +LG WL
Sbjct: 335 HIYQIQPITNNIKSQARIHRKCEPVSLQIGWLHKEDIQFLV-LEGATMDIILGRPWLVKH 393
Query: 188 GSIL 191
IL
Sbjct: 394 DPIL 397
>gi|1764013|emb|CAB06047.1| COS41.3 [Ciona intestinalis]
Length = 1209
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%)
Query: 103 SLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQ 162
S+ +L+DSG++ NFL+ K A L+ E + + NG T+ GR L
Sbjct: 310 SIKVLLDSGASDNFLNKKVAHRLNLRVEKSSAVIGMATNGLSATTQGRASASISLLGRDY 369
Query: 163 IEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFD 195
F +L D +LG ++C +++ +
Sbjct: 370 TNVPFQVLDGLCADIILGHNFMCRHSEVIFKMN 402
>gi|34015085|gb|AAQ56283.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1234
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
I TIL DSG++H+F+ F L E ++ G +T+ V +++
Sbjct: 184 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPVVPIEI 243
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWLC 185
QG + LL + D +LG WL
Sbjct: 244 QGIPFPSDLILLDTKNLDVILGMNWLA 270
>gi|87162498|gb|ABD28293.1| RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger,
CCHC-type; Peptidase aspartic, active site;
Retrotransposon gag protein [Medicago truncatula]
Length = 912
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 2/129 (1%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLK-SEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
IS L +ID+G+TH F+ GL S+ + V +T+ C L
Sbjct: 332 ISNTPLVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLS 391
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
+ G E L L G D +LG WL +L + + F+ + +T +
Sbjct: 392 MFGRDFEMDLVCLPLSGMDVILGMNWL-EYNHVLINCFSKSVHFSSVEEESGAEFLSTKQ 450
Query: 218 LKAIEGDTI 226
LK +E D I
Sbjct: 451 LKQLERDGI 459
>gi|54287551|gb|AAV31295.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1374
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ +V G + S C + +
Sbjct: 382 VNSIPATVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQAFSTQYCPSATIGI 441
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWL 184
+ + LL + D +LG WL
Sbjct: 442 EEDPFPSSLILLESKDLDVILGMDWL 467
>gi|50878466|gb|AAT85240.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1472
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQL 158
++ T+L DSG+TH+FL FA G++ +V G + S C + +
Sbjct: 382 VNSIPATVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQAFSTQYCPSATIGI 441
Query: 159 QGTQIEAYFYLLSLEGCDAVLGAQWL 184
+ + LL + D +LG WL
Sbjct: 442 EEDPFPSSLILLESKDLDVILGMDWL 467
>gi|358382901|gb|EHK20571.1| hypothetical protein TRIVIDRAFT_49174 [Trichoderma virens Gv29-8]
Length = 377
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 94 RLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGC--LLSVVVANGEKLTSPGRC 151
RL+ ++ T L D+GS FL+ +FA+ GL + L+ V +A+G + G
Sbjct: 160 RLRGYLNGHLATALPDTGSDAMFLNGEFARKLGLDIDSNVRNLVEVELADGSTTMTSGIV 219
Query: 152 KGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
+ VQ ++ T ++ FY+L D +L +L
Sbjct: 220 RDVQWKVGKTTVQCNFYVLEDLCADIILSNTYL 252
>gi|226507669|ref|NP_001140639.1| uncharacterized protein LOC100272714 [Zea mays]
gi|194700296|gb|ACF84232.1| unknown [Zea mays]
Length = 459
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 100 SKASLTILIDSGSTHNFLHHKF---AKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQL 156
+K +L + I SGS F++ A+++ + P +ANGE LTS +
Sbjct: 328 NKVTLLLSIHSGSPTCFINKNLVARARLSAVSCPPA---RFTLANGESLTSDLLVPQLAW 384
Query: 157 QLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRG 212
G +L L DA+LG WL + + D+ + F G +VTL+G
Sbjct: 385 CANGHTFHTDMRVLDLGPYDAILGYDWLKSHSPMECDWANKVLVFHDAGVEVTLKG 440
>gi|449492766|ref|XP_004159094.1| PREDICTED: uncharacterized protein LOC101231524 [Cucumis sativus]
Length = 993
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 127 LKSEPGCLLSVVVANGEKLTSPGRCK-GVQLQLQGTQIEAYFYLLS-LEGCDAVLGAQWL 184
+K EPG LS+ G LT+P G L G Y L G D +LG QWL
Sbjct: 349 IKKEPGIELSLNSVVG--LTNPVEIALGGNFSLWGQGHFGVGYCCERLGGVDIILGMQWL 406
Query: 185 CTLGSILWDFDKMEMQFTKDGHQVTLRG 212
TLG D+ K+ + F ++ V +RG
Sbjct: 407 HTLGVTEVDWRKLTLTFIQNEKNVVIRG 434
>gi|357470935|ref|XP_003605752.1| Pol polyprotein [Medicago truncatula]
gi|355506807|gb|AES87949.1| Pol polyprotein [Medicago truncatula]
Length = 745
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 2/129 (1%)
Query: 99 ISKASLTILIDSGSTHNFLHHKFAKITGLK-SEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
I+ L +ID+G+TH F+ GL S+ + V +T+ C L
Sbjct: 343 INNTPLVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLS 402
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSE 217
+ G E L L G D +LG WL +L + + F+ + +T +
Sbjct: 403 MFGRDFEMDLVCLPLSGMDVILGMNWL-EYNHVLINCFSKSVHFSSVEEESGAEFLSTKQ 461
Query: 218 LKAIEGDTI 226
LK +E D I
Sbjct: 462 LKQLERDGI 470
>gi|19881710|gb|AAM01111.1|AC098682_15 putative retroelement [Oryza sativa Japonica Group]
Length = 1043
Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 139 VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKME 198
+A+G ++ KGV+ QG+ +L+L G D +LG +WL + D+ + +
Sbjct: 300 IADGGRMQCNSCVKGVEWWCQGSSFVTDLKVLALGGYDIILGMEWLEQFSPMWIDWKRKK 359
Query: 199 MQFTKDGHQVTLRGA 213
+F +VTL G
Sbjct: 360 RRFNLQDKRVTLTGV 374
>gi|425766248|gb|EKV04872.1| hypothetical protein PDIG_86730 [Penicillium digitatum PHI26]
Length = 1465
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 94 RLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKG 153
R S+ + + +L+D G++H F+ + AK G K + L V + NG+ L + G
Sbjct: 19 RPASAGNPIACRMLLDCGASHTFVSLETAKRLGGKWDKRKSLPVSLPNGDTLYTQG-TTN 77
Query: 154 VQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
V ++L G + +EG D VLG +LC
Sbjct: 78 VVIRLGGWTGMKVVGAVDVEGYDVVLGNDFLC 109
>gi|62732819|gb|AAX94938.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550206|gb|ABA93003.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1436
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAK-----ITGLKSEPGCLLSVVVANGEKLTSPGRCK 152
SI+ + +L DSG++H+F+ K ++ + GL+ +V + G ++T C
Sbjct: 371 SINSTPVKVLFDSGASHSFISRKASQKHNLTLVGLRKP-----MIVHSPGGEITVSHACI 425
Query: 153 GVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
V ++L+ + +L + D +LG WL
Sbjct: 426 DVPIRLRDVVFPSNLLVLIPQTLDVILGMDWL 457
>gi|22725944|gb|AAN04954.1| Putative retroelement [Oryza sativa Japonica Group]
gi|78708171|gb|ABB47146.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 813
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 139 VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKME 198
+A+G ++ KGV+ QG+ +L+L G D +LG +WL + D+ + +
Sbjct: 274 IADGGRMQCNSCVKGVEWWCQGSSFVTDLKVLALGGYDIILGMEWLEQFSPMWIDWKRKK 333
Query: 199 MQFTKDGHQVTLRGA 213
+F +VTL G
Sbjct: 334 RRFNLQDKRVTLTGV 348
>gi|224143665|ref|XP_002336067.1| predicted protein [Populus trichocarpa]
gi|222869875|gb|EEF07006.1| predicted protein [Populus trichocarpa]
Length = 262
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDVQKY 43
V+ YQ++FE L R L D+ FISGLKD ++T+V +
Sbjct: 176 VAAYQSQFENLAQRIDGLLDRFLTRTFISGLKDDIKTNVNSF 217
>gi|54287629|gb|AAV31373.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2408
Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
++L DSG+TH+FL FA G++ +V G ++ S C ++++
Sbjct: 384 SVLFDSGATHSFLSKSFASNYGMEVISLGRHLLVNTPGNQVFSTQYCPSATIEIEEVPFP 443
Query: 165 AYFYLLSLEGCDAVLGAQWL 184
+ LL + D +LG WL
Sbjct: 444 SSLILLESKDLDVILGMDWL 463
>gi|56155209|gb|AAV80394.1| polyprotein [Hordeum vulgare subsp. vulgare]
Length = 1486
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 106 ILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEA 165
+L DSG++H+FL + FA + + +V+ G ++S V +++ A
Sbjct: 395 VLFDSGASHSFLSYPFAAKNDIHLQELARSFDIVSPGMLMSSRWFAPDVSIKMDNYAFLA 454
Query: 166 YFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGA 213
Y+L D +LG WL + + D + E++ T V + A
Sbjct: 455 SPYVLGKSDIDLILGMDWLAMNKASI-DCEAKEVKMTHSSEDVIIFAA 501
>gi|242826075|ref|XP_002488568.1| retrovirus polyprotein, putative [Talaromyces stipitatus ATCC
10500]
gi|218712386|gb|EED11812.1| retrovirus polyprotein, putative [Talaromyces stipitatus ATCC
10500]
Length = 1757
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 8/143 (5%)
Query: 93 MRLQSSISKASLTILIDSGSTHNFLHHKF-AKITGLKSEPGCLLSVVVANGEKLTSPG-- 149
++ ++I + + I+IDSG+T N++ + K+ L + + + NGEKL+ G
Sbjct: 577 FKITANILGSDVRIMIDSGATGNYMDPRTQEKLQILGRKKPTPIPLTGLNGEKLSEEGIT 636
Query: 150 -RCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGS-ILWDFDKMEMQFTKDGHQ 207
+ + + G F + L D +LG WL I WD + + + G
Sbjct: 637 DETGWLAMSIDGHLEMINFDIAKLGRDDVILGIPWLRKHNPEIQWDKGHLHLTRCRCGTT 696
Query: 208 VTLRGATTSELKAIEGDTIQKTL 230
T++ + T+E + I+ IQ+T+
Sbjct: 697 RTIKASETTESQEID---IQETM 716
>gi|242117582|dbj|BAH80065.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 821
Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 37/80 (46%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
T+ DSG+TH+FL FA G++ +V G ++ S C ++++
Sbjct: 175 TVFFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQVFSTQYCPSATIEIEEVLFP 234
Query: 165 AYFYLLSLEGCDAVLGAQWL 184
+ LL + D +LG WL
Sbjct: 235 SSLILLESKDLDVILGMDWL 254
>gi|147779107|emb|CAN73467.1| hypothetical protein VITISV_043900 [Vitis vinifera]
Length = 1593
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 12/95 (12%)
Query: 41 QKYTFGHKCK--KLFLIEAEEGDEPKEHEKEKDVTQETPAISLHALARVQSPQ--TMRLQ 96
++YT GHKC+ +L L+E E G E E E+ + ++ P ISL+ALA + P + RL
Sbjct: 289 ERYTPGHKCRQPQLLLMEGESGWE--ASEMEEPLVEQEPEISLYALAVRKWPPCYSSRL- 345
Query: 97 SSISKASLTILIDSGSTHNFLHHKFAKITGLKSEP 131
+ + + +G+ + ++ TGL++ P
Sbjct: 346 --VPPGLFPVRVANGTP---MQCRWKYETGLRTTP 375
>gi|34015354|gb|AAQ56543.1| putative gag-protein [Oryza sativa Japonica Group]
Length = 835
Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 9/150 (6%)
Query: 45 FGHKCKKLFLIEAEEGDEP-KEHEKEKDVTQETPAISLHALAR--VQSPQTMRLQSSISK 101
F KC K ++G P + + KDVT+ H A + +P + I
Sbjct: 600 FADKCPK---PRCQQGQAPPRLNNGGKDVTRSRVN---HVTAEDVLTTPDIIVGTFLIHS 653
Query: 102 ASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGT 161
TIL DSG++H+F++ F L E ++ G +T+ V +++QG
Sbjct: 654 IPATILFDSGASHSFIYVPFVGRNQLGVERIRNPLLITTPGGVMTAKYYSPTVPIEIQGI 713
Query: 162 QIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 714 PFPSDLILLDTKNLDVILGMNWLAQFQGVV 743
>gi|425773079|gb|EKV11451.1| hypothetical protein PDIG_49840 [Penicillium digitatum PHI26]
Length = 1105
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 94 RLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKG 153
R S+ + + +L+D G++H F+ + AK G K + L V + NG+ L + G
Sbjct: 19 RPASAGNPIACRMLLDCGASHTFVSLETAKRLGGKWDKRKSLPVSLPNGDTLYTQG-TTN 77
Query: 154 VQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
V ++L G + +EG D VLG +LC
Sbjct: 78 VVIRLGGWTGMKVVGAVDVEGYDVVLGNDFLC 109
>gi|242210562|ref|XP_002471123.1| predicted protein [Postia placenta Mad-698-R]
gi|220729812|gb|EED83680.1| predicted protein [Postia placenta Mad-698-R]
Length = 865
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 95 LQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEP-GCLLSVVVANGEKLTSPGRCKG 153
L+ +T LI+SGS N + + + +G+ + G S+ NG+ + G C+
Sbjct: 724 LEGKFGSEQVTFLINSGSELNLITRRVWEQSGVDMDSDGSRWSLKGINGDPVPLLGCCRD 783
Query: 154 VQLQLQGTQIEAYFYLLSLE--GCDAVLGAQWL 184
+++ G + +F++ + E D +LG WL
Sbjct: 784 ASVEIDGWHFDHHFFVSTREFGNYDGILGQPWL 816
>gi|425767573|gb|EKV06142.1| hypothetical protein PDIG_79200 [Penicillium digitatum PHI26]
Length = 1414
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 94 RLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKG 153
R S+ + + +L+D G++H F+ + AK G K + L V + NG+ L + G
Sbjct: 19 RPASAGNPIACRMLLDCGASHTFVSLETAKRLGGKWDKRKSLPVSLPNGDTLYTQG-TMN 77
Query: 154 VQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
V ++L G + +EG D VLG +LC
Sbjct: 78 VVIRLGGWTGMKVVGAVDVEGYDVVLGNDFLC 109
>gi|77554349|gb|ABA97145.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1288
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 73/185 (39%), Gaps = 41/185 (22%)
Query: 2 VSEYQTRFERLLARAGH--LTDKQEAECFISGLKDGLRTDVQKYTFGHKCKKLFLIEAEE 59
V EY F RL A TD ++ E F+SGL D L + +
Sbjct: 199 VIEYLHEFNRLARYAPEDVRTDAEKQEKFMSGLDDELTNQLISRDY-------------- 244
Query: 60 GDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHH 119
E E +K + QE ++ A+ +P+ + ++ IL DSG+TH+F+
Sbjct: 245 --EDFEKLVDKAIRQEEQCNKMNQEAQ-SAPEVILGTFPVNSTPAVILFDSGATHSFISK 301
Query: 120 KFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVL 179
+FA G LS+V KL P R + G A LL + D +L
Sbjct: 302 RFAGAHG--------LSLV-----KLKIPMR-----VHTPG----ANLILLESKDLDVIL 339
Query: 180 GAQWL 184
G WL
Sbjct: 340 GMDWL 344
>gi|147792776|emb|CAN62233.1| hypothetical protein VITISV_010121 [Vitis vinifera]
Length = 1797
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 92 TMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLK-SEPGCLLSVVVANGEKLTSPGR 150
T+R+ + ++ +LID GSTH+F+ FA + GL + L V G+ + +
Sbjct: 793 TLRIHTLFAR----VLIDLGSTHSFVSVSFAGLLGLPVASMDFDLIVATPVGDSVVASRM 848
Query: 151 CKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCT 186
+ + + ++ LL L+ D +LG WL +
Sbjct: 849 LRNCIVMIGYREMPIDLVLLDLQDFDVILGMDWLAS 884
Score = 36.6 bits (83), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 97/229 (42%), Gaps = 22/229 (9%)
Query: 2 VSEYQTRFERLLARAGHL--TDKQEAECFISGLKDGLRTDVQKYTFGHKCKKLFLIEAEE 59
+++Y+ +F L + L T+K++A F GLK L+ + G + + E
Sbjct: 3 MAQYEAKFTELSCFSPQLIATEKEKALKFQDGLKPYLKNKISILKLGVYSEVVDSDLIAE 62
Query: 60 GDEPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHH 119
D + H+ + + + H T+R+ + ++ +LID GSTH+F+
Sbjct: 63 KDNEELHQYREQQRKRNRSDGAHG--------TLRIHTLFAR----VLIDPGSTHSFVSV 110
Query: 120 KFAKITGLK-SEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAV 178
FA + GL + L V G+ + + + + + ++ LL L+ D +
Sbjct: 111 SFAGLLGLPVASMDFDLIVATPVGDFVVASRMLRNCIVMIGYREMLVDLVLLDLQDFDVI 170
Query: 179 LGAQWLCTLGSILWDFDKM-------EMQFTKDGHQVTLRGATTSELKA 220
LG WL + + + F+K + +F+ +G V S L+A
Sbjct: 171 LGMDWLTSYHASIDCFEKRVTFSIPGQPKFSFEGKHVDRPLRMISALRA 219
>gi|77554116|gb|ABA96912.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 382
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 23/107 (21%)
Query: 27 CFISGLKDGLRTDVQKYTFGHKCKK---LFLIEAEEGDEPKEHEKEKDVTQETP------ 77
CF G ++++ HKC + L ++E E +E + + + + P
Sbjct: 248 CFTHG---------ERWSKDHKCAQTVQLHVVELEAFQLEEETDSLETILESNPEENNLM 298
Query: 78 AISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNF-----LHH 119
IS+HA S ++R++ I L +LI+SGSTH+F +HH
Sbjct: 299 TISVHAWNGTDSAHSLRVKGLIQGTELLMLINSGSTHSFVDEQMIHH 345
>gi|77551789|gb|ABA94586.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1710
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAK-----ITGLKSEPGCLLSVVVANGEKLTSPGRCK 152
SI+ + +L DSG++H+F+ K ++ + GL+ +V + G ++T C
Sbjct: 749 SINSTPVKVLFDSGASHSFISLKASQKHNLTLVGLRKP-----MIVHSPGGEITMSHACI 803
Query: 153 GVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLC 185
V ++L+ + +L + D +LG WL
Sbjct: 804 DVPIRLRDVVFPSNLMVLIPQTLDVILGMDWLA 836
>gi|34015131|gb|AAQ56328.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 964
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 105 TILIDSGSTHNFLHHKFA---KITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGT 161
++L DSG+TH+F+ FA K+ + P +V + ++ + + ++ +QG
Sbjct: 281 SVLFDSGATHSFVTKGFASDHKLPISRLHPPL---IVTSPDSEIIAEFISRDTKIAIQGV 337
Query: 162 QIEAYFYLLSLEGCDAVLGAQWL 184
+ A +L +G D +LG W+
Sbjct: 338 EFTAELTILHTKGLDVILGMDWM 360
>gi|357448513|ref|XP_003594532.1| Zinc finger protein GIS2 [Medicago truncatula]
gi|355483580|gb|AES64783.1| Zinc finger protein GIS2 [Medicago truncatula]
Length = 499
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 17/173 (9%)
Query: 18 HLTDKQEAECFISG-----LKDGLRTDVQKYTFGHKCKKLFLIEAEEGDEPKEHEKEKDV 72
++ K+ +CF G L D +D+ + CK EEG + ++ K V
Sbjct: 280 NVCPKEVEKCFWCGKKGHTLADCKHSDIVCF----NCK-------EEGHIGSQSKQPKRV 328
Query: 73 TQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGL-KSEP 131
+L + +R I+ L +ID+G+TH F+ A GL S+
Sbjct: 329 PTTGRVFALAGTQTENEDRLIRGTCYINNTLLVAIIDTGATHCFIAFDCASTLGLVMSDM 388
Query: 132 GCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
+ V +T+ C L + G E L L G D +LG WL
Sbjct: 389 NGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWL 441
>gi|34015139|gb|AAQ56336.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 674
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%)
Query: 135 LSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDF 194
L V VANG L + ++QG F +L L D +LG WL + D+
Sbjct: 400 LQVRVANGSILQCESELPNAKWEVQGNTFHTTFKVLPLNNYDVILGMDWLEQHSPMDIDW 459
Query: 195 DKMEMQFTKDGHQVTLRGATT 215
K + +G V L G ++
Sbjct: 460 QKKTLSLQGNGGLVQLLGVSS 480
>gi|38345527|emb|CAD41297.2| OSJNBa0020J04.2 [Oryza sativa Japonica Group]
Length = 1537
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAK-----ITGLKSEPGCLLSVVVANGEKLTSPGRCK 152
SI+ + +L DSG++H+F+ K ++ + GL+ +V + G ++T C
Sbjct: 306 SINSTPVKVLFDSGASHSFISLKASQKHNLTLVGLRKP-----MIVHSPGGEITVSHACI 360
Query: 153 GVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
V ++L+ + +L + D +LG WL
Sbjct: 361 DVPIRLRDVVFPSNLMILIPQTLDVILGMDWL 392
>gi|38344099|emb|CAD39395.2| OSJNBb0089K24.5 [Oryza sativa Japonica Group]
Length = 1365
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%)
Query: 111 GSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLL 170
G+TH+F+ F ++ E ++ G +L + V +++QG A LL
Sbjct: 353 GATHSFISRDFVAKHQIRVEDLSKPMIISTPGSQLPAKLFSPSVTIEIQGVTFLANLILL 412
Query: 171 SLEGCDAVLGAQWLCTLGSIL 191
S + D +LG WL I+
Sbjct: 413 SSKNLDVILGMNWLTKHSGII 433
>gi|326670755|ref|XP_003199286.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1375
Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 96 QSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGR----C 151
Q +++A T LIDSGS NF+ H + L++E + + + S R C
Sbjct: 247 QRRLTRA--TALIDSGSAGNFISHSLCRQLHLRTEASTHIYQIQPITNNIKSQARIHRKC 304
Query: 152 KGVQLQLQGTQIEAYFYLLSLEGC--DAVLGAQWLCTLGSIL 191
+ V LQ+ E +L+ LEG D +LG WL IL
Sbjct: 305 EPVSLQIGWLHKEDIQFLV-LEGATMDIILGRPWLVKHDPIL 345
>gi|449463685|ref|XP_004149562.1| PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial-like
[Cucumis sativus]
Length = 787
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 71 DVTQETPAI---SLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGL 127
+V QE A+ S++++ + +P TM+++ + + +LID G+THNF+ + +
Sbjct: 324 EVIQEEQAVVELSINSVVGLSNPGTMKVKGKLLGKEIIVLIDCGATHNFISESLVEELQI 383
Query: 128 KSEPGCLLSVVVANGEKLTSPG 149
++ V++ +G + G
Sbjct: 384 STKSTTNYGVILGSGTAIKGKG 405
>gi|326670757|ref|XP_003199287.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1404
Score = 38.1 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 96 QSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGR----C 151
Q +++A T LIDSGS NF+ H + L++E + + + S R C
Sbjct: 247 QRRLTRA--TALIDSGSAGNFISHSLCRQLHLRTEASTHIYQIQPITNNIKSQARIHRKC 304
Query: 152 KGVQLQLQGTQIEAYFYLLSLEGC--DAVLGAQWLCTLGSIL 191
+ V LQ+ E +L+ LEG D +LG WL IL
Sbjct: 305 EPVSLQIGWLHKEDIQFLV-LEGATMDIILGRPWLVKHDPIL 345
>gi|224142047|ref|XP_002324370.1| predicted protein [Populus trichocarpa]
gi|222865804|gb|EEF02935.1| predicted protein [Populus trichocarpa]
Length = 95
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 2 VSEYQTRFERLLARAGHLTDKQEAECFISGLKDGLRTDV 40
V Y+T+FE LL R L+D CF+ GLK+ +R V
Sbjct: 13 VELYKTQFEMLLNRVRGLSDSHRLNCFLGGLKEEMRVGV 51
>gi|54291789|gb|AAV32158.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1131
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
++ +L DSG+TH+FL FA G++ +V G +++S C V ++
Sbjct: 350 PVNSIPAYVLFDSGATHSFLSKIFASDHGMEVISLGRPLLVNTLGNQVSSTQYCTSVTIE 409
Query: 158 LQGTQIEAYFYLLSLEG--CDAVLGAQWL 184
++ +I L+SLE D +LG WL
Sbjct: 410 IE--EIPFLSSLISLESKDLDVILGMDWL 436
>gi|38344636|emb|CAE05069.2| OSJNBa0094P09.8 [Oryza sativa Japonica Group]
Length = 954
Score = 38.1 bits (87), Expect = 3.0, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 691 TILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAEYYSPAVPIEIQGIPFP 750
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL+ + D +LG WL ++
Sbjct: 751 SDLILLNTKNLDVILGMNWLAQFQGVV 777
>gi|407399651|gb|EKF28386.1| hypothetical protein MOQ_007867 [Trypanosoma cruzi marinkellei]
Length = 836
Score = 38.1 bits (87), Expect = 3.1, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 62 EPKEHEKEKDVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKF 121
EP KDV + HA +PQ I+ A L +++DS S +
Sbjct: 254 EPLRFFLAKDVGTLVEDVDRHAFTLSFTPQLEGRPGCITNAELVLVVDSHSCQSCEAMAN 313
Query: 122 AKITGLKSEP-GCLLSVVVANGEKLTSPGRCKGVQL-QLQGTQIEAY 166
+ G++ P L+VVV +K SP +C V L +Q Q+ A+
Sbjct: 314 GILVGMRGLPESVFLNVVVVGAKKDVSPWQCGAVSLCDVQLEQLSAF 360
>gi|147835239|emb|CAN67792.1| hypothetical protein VITISV_001313 [Vitis vinifera]
Length = 1414
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 81 LHALARVQSPQTMRL---QSSISKASLTILIDSGSTHNFLHHKFAKITGLK-SEPGCLLS 136
L A + ++PQ+ RL ++ ++ + L+D+G+THNF+ A+ L+ S+ G L
Sbjct: 421 LKAKSMFKTPQSKRLMYVEALVNGKATKALVDTGATHNFVAEDEARRLELQASKEGGWLK 480
Query: 137 VVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDF 194
V N S G +GV + + + F + ++ VLG +L + ++ F
Sbjct: 481 AV--NSAAKPSHGVARGVSMHIGSWEGRVDFTVAPMDDFKMVLGMDFLQKVKAVPLPF 536
>gi|19881536|gb|AAM00937.1|AC021892_1 Putative retroelement [Oryza sativa Japonica Group]
Length = 1052
Score = 38.1 bits (87), Expect = 3.2, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 706 TILFDSGASHSFISVSFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 765
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 766 SDLILLDTKNLDVILGMNWLAQFQGVV 792
>gi|147781636|emb|CAN75959.1| hypothetical protein VITISV_003125 [Vitis vinifera]
Length = 462
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 168 YLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
Y L L G D VLG QWL LG ++ ++ KM M+F + + T+
Sbjct: 17 YSLPLTGLDLVLGIQWLEQLGLVMCNWQKMTMEFQWEDQECTV 59
>gi|320031435|gb|EFW13399.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 666
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%)
Query: 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQ 157
+I++ L +LID+GS N L K+ ++ L E +++VV GE C V +Q
Sbjct: 202 TINQQELMVLIDTGSEINLLSQKYTEMLKLPMENKLQVTMVVQTGEVTPFYTFCDEVPVQ 261
Query: 158 LQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGS 189
+ F + +LG W + +
Sbjct: 262 IGDIVTHTPFLIFKRGDQQLILGRPWWVPVDT 293
>gi|38347260|emb|CAE05307.2| OSJNBa0056L23.5 [Oryza sativa Japonica Group]
Length = 927
Score = 37.7 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 688 TILFDSGASHSFISVPFVGSNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 747
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 748 SDLILLDTKNLDVILGMNWLAQFQGVV 774
>gi|224102399|ref|XP_002312663.1| predicted protein [Populus trichocarpa]
gi|222852483|gb|EEE90030.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 21/140 (15%)
Query: 106 ILIDSGSTHNFLHHKFA----KITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGT 161
+L D+G+TH+F+ FA K L P C V + + E + ++Q+QG
Sbjct: 450 VLFDTGATHSFVSSYFALRFTKQPILLESPLC---VAIPSDEVMFGEYVYVDCEVQVQGR 506
Query: 162 QIEAYFYLLSLEGCDAVLGAQWL--------CTLGSILWDFD-KMEMQFTKDGHQVTLRG 212
+ +L + G D +LG WL C ++++ D + E F DG
Sbjct: 507 NLLGDLVILEIVGFDVILGMDWLSRHHASVDCWNKTVIFKPDEETEFAFHGDG-----LS 561
Query: 213 ATTSELKAIEGDTIQKTLRK 232
+ +S L AI ++K K
Sbjct: 562 SPSSILSAITRRMVRKGWNK 581
>gi|19881766|gb|AAM01167.1|AC113336_19 Putative retroelement [Oryza sativa Japonica Group]
gi|110288687|gb|ABB46920.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 892
Score = 37.7 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 714 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 773
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 774 SDLILLDTKNLDVILGMNWLAQFQGVV 800
>gi|13992687|gb|AAK51581.1|AC022352_17 Putative retroelement [Oryza sativa Japonica Group]
Length = 959
Score = 37.7 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 655 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 714
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 715 SDLILLDTKNLDVILGMNWLAQFQGVV 741
>gi|110288855|gb|ABB47096.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 987
Score = 37.7 bits (86), Expect = 3.6, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 673 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 732
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 733 SDLILLDTKNLDVILGMNWLAQFQGVV 759
>gi|22539074|gb|AAN01246.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431332|gb|AAP53127.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1045
Score = 37.7 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 697 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 756
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 757 SDLILLDTKNLDVILGMNWLAQFQGVV 783
>gi|147867197|emb|CAN82051.1| hypothetical protein VITISV_042770 [Vitis vinifera]
Length = 429
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 173 EGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKAIEGDTIQKTLR 231
+G D VLG QWL LGS++ D+ ++ M+F + L G ++A + + K +R
Sbjct: 147 DGLDIVLGIQWLELLGSVVCDWRELTMEFMWENQTKKLVGIDGQHIQAASIEELTKEIR 205
>gi|449457221|ref|XP_004146347.1| PREDICTED: uncharacterized protein LOC101206063 [Cucumis sativus]
Length = 1115
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 107 LIDSGSTHNFLHHKFAKITGLK--SEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
+ D+G++HNF++ AK GLK +E G + +V N + G +GV +++ Q +
Sbjct: 450 MFDTGASHNFMNVNEAKRIGLKFTNEEGTVKAV---NSKAQAIKGVARGVTVKIGDWQGK 506
Query: 165 AYFYLLSLEGCDAVLG 180
F +L ++ D VLG
Sbjct: 507 LDFTVLPMDDFDIVLG 522
>gi|115474951|ref|NP_001061072.1| Os08g0164800 [Oryza sativa Japonica Group]
gi|113623041|dbj|BAF22986.1| Os08g0164800, partial [Oryza sativa Japonica Group]
Length = 620
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 167 FYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGATTSELKAIEGD-T 225
F L+ L+G + +LGA W+ T I D + E+ TK+ ++ L+ T +A G+
Sbjct: 7 FNLIPLKGYEIILGADWIFTHSPITLDLKQRELVITKEKQKIILQDFTKPGKRARVGEKK 66
Query: 226 IQKTLRK 232
+ K +RK
Sbjct: 67 MGKLIRK 73
>gi|108708192|gb|ABF95987.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1273
Score = 37.4 bits (85), Expect = 4.9, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
TIL DSG++H+F+ F L E ++ G +T+ V +++QG
Sbjct: 689 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFP 748
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSIL 191
+ LL + D +LG WL ++
Sbjct: 749 SDLILLDTKNLDVILGMNWLAQFQGVV 775
>gi|255561864|ref|XP_002521941.1| conserved hypothetical protein [Ricinus communis]
gi|223538866|gb|EEF40465.1| conserved hypothetical protein [Ricinus communis]
Length = 51
Score = 37.4 bits (85), Expect = 5.4, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 71 DVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNF 116
+V + IS+HA+ +S ++++Q ++ ++ IL+D GSTH F
Sbjct: 2 EVEDDDMEISMHAIEGRESANSLKIQGEVNGKTIVILVDGGSTHTF 47
>gi|357516397|ref|XP_003628487.1| Cellular nucleic acid-binding protein [Medicago truncatula]
gi|355522509|gb|AET02963.1| Cellular nucleic acid-binding protein [Medicago truncatula]
Length = 544
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 64/174 (36%), Gaps = 19/174 (10%)
Query: 18 HLTDKQEAECFISG-----LKDGLRTDVQKYTFGHKCKKLFLIEAEEGDEPKEHEKEKDV 72
++ K E +CF G L D R DV Y + EEG + + K V
Sbjct: 254 NVCTKDEKKCFRCGQKGHTLADCKRGDVVCYNYN-----------EEGHISSQCTQPKKV 302
Query: 73 TQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITG--LKSE 130
+L + +R + L +ID+G+TH F+ + A G L
Sbjct: 303 RTGGKVFALTGTQTTNEDRLIRGTCFFNSTPLIAIIDTGATHCFIAIECAYKLGLVLSYM 362
Query: 131 PGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWL 184
G ++ A G +T+ C L + G E L L G + + G WL
Sbjct: 363 KGEMVVETPAKG-LVTTSLVCLRCPLSMFGRDFEVDLVCLPLTGMNVIFGMNWL 415
>gi|334183277|ref|NP_001185213.1| aminoacyl-tRNA synthetase, class II-like domain containing protein
[Arabidopsis thaliana]
gi|332194864|gb|AEE32985.1| aminoacyl-tRNA synthetase, class II-like domain containing protein
[Arabidopsis thaliana]
Length = 154
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 139 VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDA--VLGAQWLCTLGSIL 191
+ +G+ + S G C G+ L +Q I + LL L DA +LG +WL LG +
Sbjct: 1 MGHGQHIESKGSCLGISLWIQEAAIVEDYLLLDLNKTDADVILGYKWLSKLGETM 55
>gi|195613064|gb|ACG28362.1| hypothetical protein [Zea mays]
Length = 428
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 44/106 (41%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE 164
T+L D +TH+F+ +FA G+ P + K+ C V +++ G
Sbjct: 307 TVLYDPRTTHSFISAQFATKYGIFKCPLRSRKTISTPEGKMLVNYICPKVSVKINGIDFS 366
Query: 165 AYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTL 210
A ++ G D +LG WL +++ +K T G + +
Sbjct: 367 ADLLVIESMGKDVILGKNWLQRTKAVIQHTEKTMCLETPSGETIVV 412
>gi|240254260|ref|NP_683428.4| aminoacyl-tRNA synthetase, class II-like domain containing protein
[Arabidopsis thaliana]
gi|332194863|gb|AEE32984.1| aminoacyl-tRNA synthetase, class II-like domain containing protein
[Arabidopsis thaliana]
Length = 131
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 139 VANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDA--VLGAQWLCTLGSILWDFDK 196
+ +G+ + S G C G+ L +Q I + LL L DA +LG +WL LG + + K
Sbjct: 1 MGHGQHIESKGSCLGISLWIQEAAIVEDYLLLDLNKTDADVILGYKWLSKLGETMIENTK 60
Query: 197 MEMQFTKDGHQVTLRG-ATTSE 217
F D +T+ A TS+
Sbjct: 61 ---TFYNDTSWITINNKADTSD 79
>gi|218185713|gb|EEC68140.1| hypothetical protein OsI_36060 [Oryza sativa Indica Group]
Length = 227
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 106 ILIDSGSTHNFLHHKFAKITGLKS----EPGCLLSVVVANGEKLTSPGRCKGVQLQLQGT 161
+L DSG+TH+F+ F + + + E C+ + + + L CK + + G
Sbjct: 120 VLFDSGATHSFISTNFVRKYTIPTSQLKERICIETPLDSQITNLI----CKLCPITIDGW 175
Query: 162 QIEAYFYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFT---KDGHQVTLRG 212
++ A L + D +LG WLC + + D E Q T D +Q+T G
Sbjct: 176 ELTADLIPLDMHDFDIILGMDWLCKNKA---NIDCHEKQITLKPWDQNQITYHG 226
>gi|38568043|emb|CAD40417.3| OSJNBa0065J03.13 [Oryza sativa Japonica Group]
Length = 759
Score = 37.0 bits (84), Expect = 7.2, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 106 ILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRC 151
+L DSG+TH+F+ KF + GL+ E LS VV+ + P C
Sbjct: 716 VLFDSGATHSFISKKFVGMHGLRKEE---LSTVVSQNDSKIHPQNC 758
>gi|77553383|gb|ABA96179.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 770
Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Query: 71 DVTQETPAISLHALARVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFA-KITGLKS 129
D+ QE L A Q + + S A++T +SGST++F+ + K+ G++
Sbjct: 140 DILQEDTEEILSAETATQKEDLIVMAISQQAANVT---ESGSTNSFIDEQVGMKMIGVE- 195
Query: 130 EPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEGCDAVLGAQWLCTLGS 189
E L V +A+G +L G +QG + F L+ L D +LG WL
Sbjct: 196 EFQHSLKVQIADGGQLICSKILPGCNWCMQGHSFKNDFKLIPLGSYDIILGMDWLQQHSP 255
Query: 190 ILWDFDKMEMQFTKDGHQVTLRG 212
+ D+ + ++F + L G
Sbjct: 256 MQIDWIQKWVEFQYQNQLIRLHG 278
>gi|113205363|gb|AAT66771.2| Putative polyprotein, identical [Solanum demissum]
Length = 1771
Score = 36.6 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 105 TILIDSGSTHNFLHHKFAKITGLKS----EPGCLLSVVVANGEKLTSPGRCKGVQLQLQG 160
T+L D GST +++ FA G++S EP + V GE L + + +QG
Sbjct: 664 TVLFDPGSTFSYVFVYFAPRLGMRSASLTEP---IHVSTPVGESLVVDQILRSCLVTIQG 720
Query: 161 TQIEAYFYLLSLEGCDAVLGAQWLCTLGSIL 191
LL + D +LG WL ++L
Sbjct: 721 CDTRVDLILLDMVDFDVILGMDWLSPYHAVL 751
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,399,525,283
Number of Sequences: 23463169
Number of extensions: 128058414
Number of successful extensions: 342327
Number of sequences better than 100.0: 927
Number of HSP's better than 100.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 520
Number of HSP's that attempted gapping in prelim test: 341132
Number of HSP's gapped (non-prelim): 1106
length of query: 233
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 95
effective length of database: 9,121,278,045
effective search space: 866521414275
effective search space used: 866521414275
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 74 (33.1 bits)