Query 039109
Match_columns 233
No_of_seqs 228 out of 1061
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 10:25:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8i_A Protein DDI1 homolog 1; 99.9 6.9E-24 2.4E-28 165.5 9.8 125 89-214 21-145 (148)
2 2i1a_A DNA damage-inducible pr 99.8 3.9E-20 1.3E-24 144.1 12.4 121 89-214 23-144 (148)
3 3slz_A GAG-Pro-POL polyprotein 99.1 1.3E-10 4.5E-15 88.0 5.4 111 86-206 16-127 (132)
4 1fmb_A EIAV protease; hydrolas 99.0 1.3E-09 4.3E-14 79.4 9.1 97 92-194 8-104 (104)
5 3ec0_A Protease; HIV-2, inhibi 98.7 1.8E-07 6.2E-12 67.1 10.2 91 93-194 9-99 (99)
6 2hs1_A HIV-1 protease; ultra-h 98.6 5.6E-07 1.9E-11 64.6 11.2 91 93-194 9-99 (99)
7 3ka2_A [L-Ala51;Gly51']HIV-1 p 98.2 1.6E-05 5.5E-10 64.1 11.3 93 92-195 8-100 (203)
8 2hah_A Protease, retropepsin; 98.2 6.4E-06 2.2E-10 60.8 8.1 86 97-189 18-112 (116)
9 3sqf_A Protease; folded monome 97.7 5.1E-05 1.8E-09 55.5 5.0 97 94-198 11-111 (114)
10 3ka2_A [L-Ala51;Gly51']HIV-1 p 97.6 0.00053 1.8E-08 55.2 11.0 92 92-194 112-203 (203)
11 2rsp_A RSV protease; hydrolase 97.0 0.00094 3.2E-08 49.6 5.3 86 98-190 26-120 (124)
12 2pma_A Uncharacterized protein 96.7 0.00069 2.3E-08 51.8 2.7 94 101-196 17-139 (146)
13 3liy_A Protease; hydrolase, hy 95.6 0.028 9.7E-07 40.8 6.2 90 94-189 12-111 (116)
14 2apr_A Rhizopuspepsin; hydrola 95.4 0.061 2.1E-06 45.9 8.8 93 102-203 211-322 (325)
15 3qvc_A Histo-aspartic protease 95.0 0.14 4.6E-06 46.1 10.0 102 97-203 322-447 (451)
16 1izd_A Aspartic proteinase; su 94.7 0.074 2.5E-06 45.4 7.2 99 101-203 206-321 (323)
17 1yg9_A Aspartic protease BLA G 94.5 0.12 4E-06 44.2 8.1 94 104-203 214-327 (330)
18 1am5_A Pepsin, acid proteinase 94.5 0.11 3.6E-06 44.3 7.6 93 104-203 209-322 (324)
19 4aa9_A Chymosin; hydrolase, as 94.4 0.13 4.3E-06 43.7 8.0 95 103-203 207-318 (320)
20 3cms_A Chymosin B; hydrolase, 94.3 0.18 6E-06 42.9 8.6 94 104-203 211-321 (323)
21 1bxo_A Protein (penicillopepsi 94.2 0.14 4.7E-06 43.7 7.7 98 102-203 206-321 (323)
22 1ibq_A Aspergillopepsin; aspar 94.0 0.18 6E-06 43.0 8.1 98 102-203 207-323 (325)
23 1lya_B Cathepsin D; lysosomal 94.0 0.14 4.7E-06 41.6 7.1 95 103-203 120-239 (241)
24 1dpj_A Proteinase A; proteinas 94.0 0.24 8.3E-06 42.1 8.8 94 104-203 213-327 (329)
25 3c9x_A Trichoderma reesei aspa 93.9 0.29 9.8E-06 41.7 9.1 98 102-203 212-328 (329)
26 1miq_A Plasmepsin; aspartic pr 93.7 0.24 8.2E-06 43.2 8.5 102 97-203 247-372 (375)
27 3fv3_A SAPP1P-secreted asparti 93.7 0.14 4.7E-06 43.8 6.8 98 104-203 215-327 (339)
28 3k1w_A Renin; protease, altern 93.5 0.13 4.5E-06 43.9 6.4 95 103-203 220-338 (341)
29 1oew_A Endothiapepsin; hydrola 93.5 0.38 1.3E-05 41.0 9.2 98 102-203 211-328 (329)
30 1tzs_A Cathepsin E; hydrolase, 93.4 0.26 8.8E-06 42.4 8.1 95 104-204 223-341 (351)
31 2bju_A Plasmepsin II; aspartic 93.4 0.35 1.2E-05 43.5 9.2 95 103-203 332-448 (453)
32 2x0b_A Renin; hydrolase-hormon 93.0 0.29 9.9E-06 42.9 7.8 94 103-203 263-381 (383)
33 1wkr_A Polyporopepsin; hydrola 92.6 0.14 4.6E-06 43.9 5.1 95 104-203 207-331 (340)
34 1mpp_A Pepsin; hydrolase(acid 92.4 0.35 1.2E-05 41.7 7.5 95 104-203 231-353 (361)
35 1j71_A Candidapepsin, aspartic 92.2 0.42 1.4E-05 40.8 7.7 91 104-203 213-322 (334)
36 3aup_A SBG7S, BG, basic 7S glo 92.1 0.28 9.7E-06 43.0 6.7 95 106-201 262-382 (403)
37 1htr_B Gastricsin; aspartyl pr 91.9 0.24 8.2E-06 42.2 5.8 95 103-203 211-327 (329)
38 2jys_A Protease/reverse transc 91.6 1 3.6E-05 31.3 7.6 84 95-188 10-97 (107)
39 3pvk_A Candidapepsin-2; hydrol 91.5 1.3 4.5E-05 37.5 10.1 95 104-203 213-329 (342)
40 3psg_A Pepsinogen; hydrolase(a 91.2 0.56 1.9E-05 40.8 7.5 95 103-203 253-368 (370)
41 2qzx_A Candidapepsin-5; aspart 90.9 0.3 1E-05 41.7 5.4 96 104-203 213-329 (342)
42 1bxo_A Protein (penicillopepsi 87.3 1.2 4.1E-05 37.7 6.5 91 92-184 16-127 (323)
43 1ibq_A Aspergillopepsin; aspar 87.3 1.5 5.1E-05 37.1 7.1 91 92-184 15-126 (325)
44 3lpj_A Beta-secretase 1; alzhe 87.0 0.32 1.1E-05 43.5 2.8 28 175-203 391-418 (455)
45 3qvc_A Histo-aspartic protease 86.6 0.59 2E-05 41.9 4.4 89 92-183 138-251 (451)
46 2bju_A Plasmepsin II; aspartic 86.4 1.6 5.4E-05 39.1 7.0 90 91-183 138-252 (453)
47 1izd_A Aspartic proteinase; su 85.7 1.5 5.1E-05 37.1 6.2 91 92-184 16-127 (323)
48 1t6e_X Xylanase inhibitor; two 85.0 1.2 4E-05 38.8 5.3 27 176-203 345-371 (381)
49 2ewy_A Beta-secretase 2; BACE2 85.0 0.56 1.9E-05 40.7 3.3 28 175-203 326-353 (383)
50 1wkr_A Polyporopepsin; hydrola 84.9 1.7 5.9E-05 36.9 6.3 88 92-184 13-110 (340)
51 2x0b_A Renin; hydrolase-hormon 84.8 3.6 0.00012 35.8 8.4 90 92-184 62-176 (383)
52 1yg9_A Aspartic protease BLA G 83.8 2 6.9E-05 36.4 6.2 88 93-183 19-128 (330)
53 3vf3_A Beta-secretase 1; struc 82.9 0.45 1.5E-05 41.6 1.8 28 175-203 345-372 (402)
54 3c9x_A Trichoderma reesei aspa 82.4 3.6 0.00012 34.8 7.2 91 92-184 16-131 (329)
55 1tzs_A Cathepsin E; hydrolase, 82.1 2.4 8.3E-05 36.2 6.1 88 93-183 25-136 (351)
56 3cms_A Chymosin B; hydrolase, 81.6 5.8 0.0002 33.3 8.3 89 92-183 15-127 (323)
57 1miq_A Plasmepsin; aspartic pr 80.6 1.3 4.4E-05 38.5 3.8 88 93-183 64-176 (375)
58 1oew_A Endothiapepsin; hydrola 79.7 3.7 0.00013 34.7 6.4 91 92-184 16-130 (329)
59 3vla_A EDGP; extracellular, in 79.1 2 7E-05 37.8 4.7 26 177-203 372-397 (413)
60 3k1w_A Renin; protease, altern 79.1 9.4 0.00032 32.1 8.8 89 92-183 19-132 (341)
61 3psg_A Pepsinogen; hydrolase(a 78.9 3.5 0.00012 35.6 6.1 89 92-183 57-169 (370)
62 2qp8_A Beta-secretase 1; BACE1 78.6 1.2 4.1E-05 38.8 3.0 28 175-203 338-365 (395)
63 1mpp_A Pepsin; hydrolase(acid 78.4 3.2 0.00011 35.5 5.6 90 91-183 18-137 (361)
64 1dpj_A Proteinase A; proteinas 77.9 3.3 0.00011 34.9 5.5 89 92-183 14-126 (329)
65 4aa9_A Chymosin; hydrolase, as 77.0 8.2 0.00028 32.2 7.7 88 93-183 13-124 (320)
66 1lya_A Cathepsin D; lysosomal 76.9 2.9 9.9E-05 29.0 4.1 28 92-119 14-43 (97)
67 1am5_A Pepsin, acid proteinase 75.1 9.4 0.00032 32.0 7.6 89 92-183 13-125 (324)
68 1qdm_A Prophytepsin; aspartic 73.6 9.7 0.00033 34.1 7.7 89 92-183 53-166 (478)
69 1qdm_A Prophytepsin; aspartic 68.3 16 0.00054 32.8 7.8 53 150-203 402-476 (478)
70 3lpj_A Beta-secretase 1; alzhe 68.0 9.1 0.00031 33.9 6.1 90 92-184 75-186 (455)
71 1b5f_B Protein (cardosin A); h 64.3 13 0.00045 24.6 5.1 28 175-203 58-85 (87)
72 2io1_B Small ubiquitin-related 63.6 32 0.0011 23.4 7.0 65 87-155 2-67 (94)
73 1b5f_A Protein (cardosin A); h 49.3 15 0.00052 29.3 3.9 89 92-183 14-127 (239)
74 2apr_A Rhizopuspepsin; hydrola 47.9 15 0.0005 30.8 3.7 92 91-184 15-128 (325)
75 1wh3_A 59 kDa 2'-5'-oligoadeny 46.0 39 0.0013 22.0 5.0 44 86-129 1-45 (87)
76 2dzi_A Ubiquitin-like protein 45.7 36 0.0012 21.7 4.7 44 87-130 2-46 (81)
77 2qzx_A Candidapepsin-5; aspart 42.9 19 0.00065 30.3 3.6 91 92-184 13-129 (342)
78 1j71_A Candidapepsin, aspartic 42.3 20 0.00067 30.1 3.6 91 92-184 13-129 (334)
79 1wgg_A Ubiquitin carboxyl-term 42.3 62 0.0021 21.9 5.6 45 87-131 2-47 (96)
80 1vd2_A Protein kinase C, IOTA 42.2 78 0.0027 21.5 6.1 55 89-145 3-59 (89)
81 3fv3_A SAPP1P-secreted asparti 41.0 21 0.00072 29.9 3.6 92 92-185 13-124 (339)
82 2qp8_A Beta-secretase 1; BACE1 40.1 24 0.00081 30.4 3.9 90 92-184 22-133 (395)
83 1b5f_A Protein (cardosin A); h 39.1 24 0.00081 28.1 3.5 24 103-126 210-233 (239)
84 3aup_A SBG7S, BG, basic 7S glo 38.6 28 0.00096 30.0 4.1 29 91-119 21-51 (403)
85 2ewy_A Beta-secretase 2; BACE2 38.5 26 0.00089 29.9 3.9 89 92-183 14-124 (383)
86 1m3w_A H10H24; four-helix bund 38.5 19 0.00065 18.9 1.8 12 3-14 11-22 (32)
87 3pvk_A Candidapepsin-2; hydrol 38.3 25 0.00084 29.4 3.6 90 92-183 13-128 (342)
88 1htr_B Gastricsin; aspartyl pr 37.1 26 0.0009 29.2 3.6 89 92-183 13-125 (329)
89 1v5t_A 8430435I17RIK protein; 35.7 28 0.00094 23.3 2.9 43 88-130 3-46 (90)
90 3vf3_A Beta-secretase 1; struc 35.6 34 0.0012 29.4 4.2 91 91-184 28-140 (402)
91 1v86_A DNA segment, CHR 7, way 33.8 98 0.0033 20.7 5.6 41 90-130 15-55 (95)
92 3v6c_B Ubiquitin; structural g 32.9 70 0.0024 21.0 4.7 44 87-130 12-56 (91)
93 1wxv_A BAG-family molecular ch 32.5 77 0.0026 20.8 4.8 44 86-129 1-49 (92)
94 1l6x_B Minimized B-domain of p 29.5 29 0.001 19.1 1.7 29 5-35 5-33 (34)
95 3dbh_I NEDD8; cell cycle, acti 28.2 1E+02 0.0035 19.7 4.8 41 90-130 10-51 (88)
96 4eew_A Large proline-rich prot 26.7 1.1E+02 0.0038 19.7 4.8 41 89-129 14-55 (88)
97 4dwf_A HLA-B-associated transc 26.5 1.2E+02 0.0041 19.6 4.9 40 90-129 3-43 (90)
98 1dee_G Immunoglobulin G bindin 25.5 33 0.0011 21.0 1.6 30 6-37 6-35 (54)
99 1wx8_A Riken cDNA 4931431F19; 24.1 1.3E+02 0.0046 19.7 4.9 42 89-130 14-55 (96)
100 2dzm_A FAS-associated factor 1 23.2 1.8E+02 0.0063 19.8 5.5 41 91-131 8-48 (100)
101 3vla_A EDGP; extracellular, in 22.8 73 0.0025 27.6 4.0 29 90-118 19-49 (413)
102 1wy8_A NP95-like ring finger p 21.1 1.7E+02 0.0059 18.7 4.9 43 87-129 2-47 (89)
No 1
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=99.90 E-value=6.9e-24 Score=165.49 Aligned_cols=125 Identities=17% Similarity=0.191 Sum_probs=102.9
Q ss_pred cCCeEEEEEeeCCeeEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCceeccCCceeceeEeecceeEEEEEE
Q 039109 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFY 168 (233)
Q Consensus 89 ~~~t~~v~~~i~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~~~~~~~~~~~~~~~i~g~~~~~~~~ 168 (233)
..+.+++.+.|||+++.+||||||++||||.++|+++|++......+.......+...+.+.+..+++++++..+.++|.
T Consensus 21 ~~~~l~v~~~Ing~~v~~LVDTGAs~s~Is~~~A~rlGL~~~~~~~~~~~a~g~G~~~~~g~v~~~~I~Ig~~~~~~~~~ 100 (148)
T 3s8i_A 21 QVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIEGDFLQCSFS 100 (148)
T ss_dssp -CCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHTTCGGGEEGGGCEECCC---CEEEEEEEEEEEEETTEEEEEEEE
T ss_pred ccCEEEEEEEECCEEEEEEEeCCCCcEeeCHHHHHHcCCccccCcceeEEEEcCCccEEEEEEEEEEEEECCEEEEEEEE
Confidence 35689999999999999999999999999999999999986422223333222223445677888899999999999999
Q ss_pred EeecCCCccccchhHHhhhCCeEEEccccEEEEEeCCeEEEEEecC
Q 039109 169 LLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGAT 214 (233)
Q Consensus 169 Vl~l~~~d~ILG~dwL~~~~~i~id~~~~~~~f~~~g~~v~l~g~~ 214 (233)
|++...+|+|||||||.+++. .|||++++|+|...++.+.+.+..
T Consensus 101 Vle~~~~d~LLGmD~L~~~~~-~ID~~~~~L~l~~~~~~~pfl~~~ 145 (148)
T 3s8i_A 101 ILEDQPMDMLLGLDMLRRHQC-SIDLKKNVLVIGTTGTQTYFLPEG 145 (148)
T ss_dssp EETTCSSSEEECHHHHHHTTC-EEETTTTEEECTTTCCEEECCCGG
T ss_pred EeCCCCcCeeccHHHHHhCCE-EEEcCCCEEEEccCCeEEeecCcc
Confidence 999999999999999999998 599999999998877888776654
No 2
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.9e-20 Score=144.11 Aligned_cols=121 Identities=16% Similarity=0.231 Sum_probs=95.1
Q ss_pred cCCeEEEEEeeCCeeEEEEEcCCCccccccHHHHHHhCCccCCCceeE-EEEcCCceeccCCceeceeEeecceeEEEEE
Q 039109 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLS-VVVANGEKLTSPGRCKGVQLQLQGTQIEAYF 167 (233)
Q Consensus 89 ~~~t~~v~~~i~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~-v~~a~G~~~~~~~~~~~~~~~i~g~~~~~~~ 167 (233)
..+.+.+++.|||+++.+||||||++++|++++|+++|++......+. ...+.|+. ...+.+...++.+++..+.++|
T Consensus 23 ~~~~~~v~v~InG~~~~~LvDTGAs~s~is~~~a~~lgl~~~~~~~~~~~a~g~g~~-~~~~~~~~~~i~ig~~~~~~~~ 101 (148)
T 2i1a_A 23 QVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTG-KIIGRIHQAQVKIETQYIPCSF 101 (148)
T ss_dssp CCCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHHTGGGGCBCCCC------------CEEEEEEEEEETTEEEEEEE
T ss_pred ccceEEEEEEECCEEEEEEEECCCCccccCHHHHHHcCCCccCCcceEEEEecCCCc-ccccEEEEEEEEECCEEeceeE
Confidence 457889999999999999999999999999999999999765443333 11222322 2345566678999999999999
Q ss_pred EEeecCCCccccchhHHhhhCCeEEEccccEEEEEeCCeEEEEEecC
Q 039109 168 YLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTKDGHQVTLRGAT 214 (233)
Q Consensus 168 ~Vl~l~~~d~ILG~dwL~~~~~i~id~~~~~~~f~~~g~~v~l~g~~ 214 (233)
.|++ .++|+|||||||++++. .|||+++++.|. ++++.+....
T Consensus 102 ~vl~-~~~d~iLG~d~L~~~~~-~ID~~~~~l~l~--~~~~~f~~~~ 144 (148)
T 2i1a_A 102 TVLD-TDIDVLIGLDMLKRHLA-CVDLKENVLRIA--EVETSFLSEA 144 (148)
T ss_dssp EEEC-SSCSEEECHHHHHHTTC-EEETTTTEEEET--TEEEECCCTT
T ss_pred EEec-CCCCeEecHHHHhhCCE-EEECCCCEEEEc--cEEEecCChh
Confidence 9999 78999999999999998 699999999996 4666665544
No 3
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=99.07 E-value=1.3e-10 Score=87.98 Aligned_cols=111 Identities=18% Similarity=0.192 Sum_probs=77.0
Q ss_pred ccccCCeEEEEEeeCCeeEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCceeccCCceeceeEeecceeEEE
Q 039109 86 RVQSPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEA 165 (233)
Q Consensus 86 g~~~~~t~~v~~~i~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~~~~~~~~~~~~~~~i~g~~~~~ 165 (233)
|..+.+...+.++|||+++.+|+||||+.+.++..-+. . ..++..+..++|... ......+.+.++++....
T Consensus 16 ~~d~~~RP~v~i~I~G~~~~~LlDTGAd~tVl~~~~~p-----~-~~~p~~I~GiGG~i~--vr~~~~i~IeI~g~~~~~ 87 (132)
T 3slz_A 16 GQEPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGP-----L-SDKSAWVQGATGGKR--YRWTTDRKVHLATGKVTH 87 (132)
T ss_dssp --CCCCSSEEEEEETTEEEEEEECTTCSSCEECSCCCS-----E-EEEEEEEECSSCEEE--EEEECCEEEEETTEEEEE
T ss_pred CCCccCCCEEEEEECCEEEEEEEeCCCCeEEEccccCC-----C-CCCceEEEccCCEEE--EEEEeeeEEEECCeeecc
Confidence 44455566778999999999999999999999875443 1 124567777888654 222334678999998887
Q ss_pred EEEEeecCCCccccchhHHhhhCCeEEEcc-ccEEEEEeCCe
Q 039109 166 YFYLLSLEGCDAVLGAQWLCTLGSILWDFD-KMEMQFTKDGH 206 (233)
Q Consensus 166 ~~~Vl~l~~~d~ILG~dwL~~~~~i~id~~-~~~~~f~~~g~ 206 (233)
.+.|++-. ..-|||+|||.+++. .+||. ...+....+++
T Consensus 88 ~~lV~~~t-PvnLLGrd~Ltqlg~-tL~fp~~g~~~~~~~~~ 127 (132)
T 3slz_A 88 SFLHVPDC-PYPLLGRDLLTKLKA-QIHFEGSGAQVVGPMGQ 127 (132)
T ss_dssp CCEECTTS-SSCEECHHHHHHHTC-EEEEETTEEEEECTTSC
T ss_pred eEEEECCC-CccEECHhhHhhCCc-EEECCCCCceeeccCCc
Confidence 77665332 346899999999999 58886 33343333444
No 4
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=99.03 E-value=1.3e-09 Score=79.38 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=77.1
Q ss_pred eEEEEEeeCCeeEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCceeccCCceeceeEeecceeEEEEEEEee
Q 039109 92 TMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLS 171 (233)
Q Consensus 92 t~~v~~~i~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~~~~~~~~~~~~~~~i~g~~~~~~~~Vl~ 171 (233)
...+..+|+|+++.+|+||||..++|+.+...+++++....++ +...+.|+.+... ...+.+++.|+.....+.|-|
T Consensus 8 RP~v~v~I~Gq~~e~LLDTGAD~TVl~~~~w~~i~lp~~~w~p-~~i~GiGG~i~v~--~~~i~i~i~g~~~~gtvlv~~ 84 (104)
T 1fmb_A 8 RPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQG-TGIGGVGGNVETF--STPVTIKKKGRHIKTRMLVAD 84 (104)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCCCEEC-CCEEETTEEECCE--EEEEEEEETTEEEEEEEEEES
T ss_pred CCEEEEEECCEEEEEEeccCCCcEEEccccCcccCCCCccCCc-cEEEeCCCeEEee--EeeeEEEECCeEEEEEEEECC
Confidence 4456789999999999999999999999999999988652233 3345667777665 678999999999888877755
Q ss_pred cCCCccccchhHHhhhCCeEEEc
Q 039109 172 LEGCDAVLGAQWLCTLGSILWDF 194 (233)
Q Consensus 172 l~~~d~ILG~dwL~~~~~i~id~ 194 (233)
...=|||.|||.+.+. .+||
T Consensus 85 --tp~niiGRd~L~qlg~-tLnf 104 (104)
T 1fmb_A 85 --IPVTILGRDILQDLGA-KLVL 104 (104)
T ss_dssp --CSSCEECHHHHHHTTC-CCCC
T ss_pred --CCCCEecHhHHhhcCc-EEeC
Confidence 3345899999999998 4665
No 5
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=98.68 E-value=1.8e-07 Score=67.08 Aligned_cols=91 Identities=15% Similarity=0.237 Sum_probs=67.9
Q ss_pred EEEEEeeCCeeEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCceeccCCceeceeEeecceeEEEEEEEeec
Q 039109 93 MRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSL 172 (233)
Q Consensus 93 ~~v~~~i~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~~~~~~~~~~~~~~~i~g~~~~~~~~Vl~l 172 (233)
-.+..+|+|+.+.+|+||||.++.|+ ...+|.. .+| ++..+.|+.+.... ..++.+++.|+.....+.|-|
T Consensus 9 P~vti~I~Gq~~e~LLDTGAD~TVl~-----~~~~Pg~-w~p-k~igGiGG~i~v~q-y~~i~iei~g~~~~gtvlV~~- 79 (99)
T 3ec0_A 9 PVVTAYIEGQPVEVLLDTGADDSIVA-----GIELGNN-YSP-KIVGGIGGFINTKE-YKNVEIEVLNKKVRATIMTGD- 79 (99)
T ss_dssp CEEEEEETTEEEEEEECTTCSSCEES-----SCCCCSC-CEE-EEEEETTEEEEEEE-EEEEEEEETTEEEEEEEEEEC-
T ss_pred CeEEEEECCEEEEEEEecCCCceEEc-----CcccCCC-CCc-eEEEecCCcEeeeE-EeeEEEEECCeEEEEEEEeCC-
Confidence 35668999999999999999999996 3444432 223 25667787776654 457899999999888887733
Q ss_pred CCCccccchhHHhhhCCeEEEc
Q 039109 173 EGCDAVLGAQWLCTLGSILWDF 194 (233)
Q Consensus 173 ~~~d~ILG~dwL~~~~~i~id~ 194 (233)
... =|+|.|+|.+.|. .++|
T Consensus 80 tPv-niiGRnlLtqlG~-tLnf 99 (99)
T 3ec0_A 80 TPI-NIFGRNILTALGM-SLNL 99 (99)
T ss_dssp CSS-CEECHHHHHHHTC-EEEC
T ss_pred CCc-CeeehhhHhhcCc-EEeC
Confidence 222 4799999999998 6775
No 6
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=98.62 E-value=5.6e-07 Score=64.63 Aligned_cols=91 Identities=12% Similarity=0.214 Sum_probs=67.7
Q ss_pred EEEEEeeCCeeEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCceeccCCceeceeEeecceeEEEEEEEeec
Q 039109 93 MRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSL 172 (233)
Q Consensus 93 ~~v~~~i~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~~~~~~~~~~~~~~~i~g~~~~~~~~Vl~l 172 (233)
..+..+|+|+.+.+|+||||.+++++. ..++.. .+| +...+.|+.+... ...++.+++.|+.....++|-|.
T Consensus 9 P~vtvkI~Gq~~eaLLDTGAD~TVl~~-----~~~p~~-wkp-k~igGiGG~i~v~-qy~qi~iei~g~~~~gtvlV~~t 80 (99)
T 2hs1_A 9 PLVTIKIGGQLKEALLDTGADDTIIEE-----MSLPGR-WKP-KMIGGIGGFIKVR-QYDQIIIEIAGHKAIGTVLVGPT 80 (99)
T ss_dssp CEEEEEETTEEEEEEECTTCSSEEESC-----CSSCCC-CEE-EEEEETTEEEEEE-EEEEEEEEETTEEEEEEEEESCC
T ss_pred CEEEEEECCEEEEEEeccCCCcEEEec-----ccCCCC-CCC-cEEEeCCCcEeee-EeccEEEEEeCCEEEEEEEeCCC
Confidence 356789999999999999999999995 344422 223 3455667766554 45578999999998888887443
Q ss_pred CCCccccchhHHhhhCCeEEEc
Q 039109 173 EGCDAVLGAQWLCTLGSILWDF 194 (233)
Q Consensus 173 ~~~d~ILG~dwL~~~~~i~id~ 194 (233)
. . =|+|.|||.+.|. .+||
T Consensus 81 P-v-niiGRd~Ltqlg~-tLnf 99 (99)
T 2hs1_A 81 P-V-NIIGRNLLTQIGA-TLNF 99 (99)
T ss_dssp S-S-CEECHHHHTTTTC-EEEC
T ss_pred c-c-CchhHhHHHHcCC-EEeC
Confidence 2 3 3899999999998 5775
No 7
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=98.20 E-value=1.6e-05 Score=64.11 Aligned_cols=93 Identities=11% Similarity=0.149 Sum_probs=69.3
Q ss_pred eEEEEEeeCCeeEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCceeccCCceeceeEeecceeEEEEEEEee
Q 039109 92 TMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLS 171 (233)
Q Consensus 92 t~~v~~~i~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~~~~~~~~~~~~~~~i~g~~~~~~~~Vl~ 171 (233)
...+..+|+|+++.+|+||||.++.+. ..+|+. ..+|. ...+-|+.+... ....+++++.|+.....+.|-|
T Consensus 8 RP~vtv~I~Gq~~e~LLDTGAD~TVl~-----~~~lpg-~w~pk-~igGIGG~i~vr-qy~~i~iei~g~~~~gtvlVg~ 79 (203)
T 3ka2_A 8 RPLVTIRIGGQLKEALLDTGADDTVIE-----ELNLPG-XWKPK-LIGGIAGFIKVR-QYDQIPVEIXGHKAIGTVLVGP 79 (203)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEC-----SCCCSS-CEEEE-EEEETTEEEEEE-EEEEEEEEETTEEEEEEEEESC
T ss_pred CCeEEEEECCEEEEEEEecCCCceEEe-----cccCCC-CCCce-EEEEccCcEEEE-EEcceeEEEcCeEEEEEEeeCC
Confidence 346678999999999999999999998 355553 22333 345667655543 3447899999999887777744
Q ss_pred cCCCccccchhHHhhhCCeEEEcc
Q 039109 172 LEGCDAVLGAQWLCTLGSILWDFD 195 (233)
Q Consensus 172 l~~~d~ILG~dwL~~~~~i~id~~ 195 (233)
...=|+|.|.|.+++. .+||.
T Consensus 80 --tPvnIiGRd~LtqlG~-tLnf~ 100 (203)
T 3ka2_A 80 --TPVNIIGRNLLTQIGX-TLNFX 100 (203)
T ss_dssp --CSSCEECHHHHTTTTC-EEEGG
T ss_pred --CCcCccchhhhhhcCc-eEEec
Confidence 2344899999999999 79998
No 8
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=98.19 E-value=6.4e-06 Score=60.76 Aligned_cols=86 Identities=14% Similarity=0.173 Sum_probs=61.7
Q ss_pred EeeCCeeEEEEEcCCCccccccHHHHHHhCC---ccCCCceeEEEEcCCceeccCCceeceeEeeccee-----EEEEEE
Q 039109 97 SSISKASLTILIDSGSTHNFLHHKFAKITGL---KSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQ-----IEAYFY 168 (233)
Q Consensus 97 ~~i~~~~~~~LiDSGAt~nfIs~~~a~~l~l---~~~~~~~~~v~~a~G~~~~~~~~~~~~~~~i~g~~-----~~~~~~ 168 (233)
.+|+|+.+.+|+||||..++|+. ..+ +.. .++.....+.|+.+... ...++.+++.++. ....+.
T Consensus 18 ikI~Gq~~eaLLDTGAD~TVi~~-----~~~~~~p~~-wkpk~~igGiGG~i~v~-qy~qv~iei~g~~~~~~~~~gtvl 90 (116)
T 2hah_A 18 IFVNGYPIKFLLDTGADITVLNR-----RDFQVKNSI-ENGRQMIGGIGGFIRGT-NYINVHLEIRDENYKTQCIFGNVC 90 (116)
T ss_dssp EEETTEEEEEEECTTCSSCEEEG-----GGCCCTTCE-EEEEEEEEETTEEEEEE-EEEEEEEEECCTTSCCEEEEEEEE
T ss_pred EEECCEEEEEEecCCCCcEEEcc-----cccccCCCC-CCCceEEecCCCceeee-EEccEEEEEeCCCCCcceeEEEEE
Confidence 99999999999999999999995 233 211 12333255667766554 4557888899887 777788
Q ss_pred Eee-cCCCccccchhHHhhhCC
Q 039109 169 LLS-LEGCDAVLGAQWLCTLGS 189 (233)
Q Consensus 169 Vl~-l~~~d~ILG~dwL~~~~~ 189 (233)
|.| ...-==|+|.|+|.+.|.
T Consensus 91 V~p~tP~~vniiGRd~Ltqlg~ 112 (116)
T 2hah_A 91 VLEDNSTPVNILGRDNMIKFNI 112 (116)
T ss_dssp EETTCCCSSEEECHHHHTTTTC
T ss_pred ECCCCCccccEecHHHHhHcCC
Confidence 877 331124899999999987
No 9
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=97.67 E-value=5.1e-05 Score=55.54 Aligned_cols=97 Identities=9% Similarity=0.041 Sum_probs=57.0
Q ss_pred EEEEeeCCeeEEEEEcCCCccccccHHHHHHhCCccC--CCceeEEEEcCCceeccCCceecee-Ee-ecceeEEEEEEE
Q 039109 94 RLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSE--PGCLLSVVVANGEKLTSPGRCKGVQ-LQ-LQGTQIEAYFYL 169 (233)
Q Consensus 94 ~v~~~i~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~--~~~~~~v~~a~G~~~~~~~~~~~~~-~~-i~g~~~~~~~~V 169 (233)
.+..+|+|+.+.+|+||||..+.|+. ..||-. +..+.+...+-|+.+.... ...+. +. +.|+.-....+|
T Consensus 11 ~vti~I~Gq~~eaLLDTGADdTVi~~-----~~lpg~W~p~~~~k~igGIGG~i~v~q-y~~~~~~~~i~g~k~i~tvlV 84 (114)
T 3sqf_A 11 SLTLWLDDKMFTGLINTGADVTIIKL-----EDWPPNWPITDTLTNLRGIGQSNNPKQ-SSKYLTWRDKENNSGLIKPFV 84 (114)
T ss_dssp EEEEEETTEEEEEEECTTCSSCEEEG-----GGSCTTSCEEECCCCCTTCCGGGCCEE-ESSCEEEECTTCCEEEECCEE
T ss_pred eEEEEECCEEEEEEEccCCCceEEec-----ccCCCCcccCcCceEEEeccceEEEEE-eccceEEEecCCCEEEEEEEE
Confidence 45589999999999999999999984 444422 1111123344566555443 22333 33 778876655566
Q ss_pred eecCCCccccchhHHhhhCCeEEEccccE
Q 039109 170 LSLEGCDAVLGAQWLCTLGSILWDFDKME 198 (233)
Q Consensus 170 l~l~~~d~ILG~dwL~~~~~i~id~~~~~ 198 (233)
.+-...+ |+|.|-|.+.|. .++|.+..
T Consensus 85 ~~ptPvN-IiGRn~LtqlG~-tLnfp~~~ 111 (114)
T 3sqf_A 85 IPNLPVN-LWGRDLLSQMKI-MMASPNDI 111 (114)
T ss_dssp ETTCSSC-EECHHHHTTSCC---------
T ss_pred CCCCccc-EEchhhHhhcCc-EEECCCcc
Confidence 6322333 689999999998 68776544
No 10
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=97.64 E-value=0.00053 Score=55.20 Aligned_cols=92 Identities=12% Similarity=0.174 Sum_probs=66.8
Q ss_pred eEEEEEeeCCeeEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCceeccCCceeceeEeecceeEEEEEEEee
Q 039109 92 TMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLS 171 (233)
Q Consensus 92 t~~v~~~i~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~~~~~~~~~~~~~~~i~g~~~~~~~~Vl~ 171 (233)
...+..+|+|+.+.+|+||||.++.++ ...++-. .+|. ...+-|+.+.... ..++.+++.|+.....+.|-|
T Consensus 112 rP~~~iki~Gq~~e~LlDTGAD~TVl~-----~~~lpg~-w~pk-~igGiGg~i~v~q-y~~i~iei~g~~~~~tvlVgp 183 (203)
T 3ka2_A 112 RPLVTIRIGGQLKEALLDTGADDTVIE-----ELNLPGX-WKPK-LIGGIGGFIKVRQ-YDQIPVEIXGHKAIGTVLVGP 183 (203)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEC-----SCCCCSC-CEEE-EEEETTEEEEEEE-EEEEEEEETTEEEEEEEEESC
T ss_pred CCcEEEEECCEEEeeeecccCCceeee-----cccCCCC-CCce-EEeeccceEEEEE-eccEEEEECCeEEEEEEEECC
Confidence 345778999999999999999999995 3444421 2233 3456676655433 356889999998888887755
Q ss_pred cCCCccccchhHHhhhCCeEEEc
Q 039109 172 LEGCDAVLGAQWLCTLGSILWDF 194 (233)
Q Consensus 172 l~~~d~ILG~dwL~~~~~i~id~ 194 (233)
. .. =|+|.|.|.++|. +++|
T Consensus 184 t-Pv-niiGRn~LtqlG~-tl~f 203 (203)
T 3ka2_A 184 T-PV-NIIGRNLLTQIGX-TLNF 203 (203)
T ss_dssp C-SS-CEECHHHHGGGTC-EEEC
T ss_pred C-Cc-CeechhhHHHhCC-eeeC
Confidence 3 22 3789999999998 6765
No 11
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=97.02 E-value=0.00094 Score=49.62 Aligned_cols=86 Identities=16% Similarity=0.218 Sum_probs=51.5
Q ss_pred eeCCeeEEEEEcCCCccccccHHHHHHhCCccCCC----ceeEEEEcCCceeccCCcee-ceeEeecce--eEEEEEEEe
Q 039109 98 SISKASLTILIDSGSTHNFLHHKFAKITGLKSEPG----CLLSVVVANGEKLTSPGRCK-GVQLQLQGT--QIEAYFYLL 170 (233)
Q Consensus 98 ~i~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~----~~~~v~~a~G~~~~~~~~~~-~~~~~i~g~--~~~~~~~Vl 170 (233)
+|+|+.+.+|+||||.+++++. ..++..-. ....+. +-|+.+.... .. .+.+++.|+ .....+.|.
T Consensus 26 ~i~gq~~eaLLDTGAD~TVl~~-----~~lP~~W~k~~~~~~~ig-GIGG~i~v~q-y~~~i~iei~g~~g~~~~tvlV~ 98 (124)
T 2rsp_A 26 KQRSVYITALLDSGADITIISE-----EDWPTDWPVMEAANPQIH-GIGGGIPMRK-SRDMIELGVINRDGSLERPLLLF 98 (124)
T ss_dssp SCSEEEEEEEECTTCSSCEEET-----TTSCTTSCEEECC----------CCCEEE-ESSCEEEEEECTTSCBCCCEEEC
T ss_pred cCCCEEEEEEecCCCCcEEEec-----ccCCCcceeeccccceee-ecCceEeeEE-eCCceEEEEeCCCCcEEEEEEEC
Confidence 4899999999999999999985 33432211 000132 3344443332 33 677778776 454556676
Q ss_pred ecCC-C-ccccchhHHhhhCCe
Q 039109 171 SLEG-C-DAVLGAQWLCTLGSI 190 (233)
Q Consensus 171 ~l~~-~-d~ILG~dwL~~~~~i 190 (233)
|... . -=|+|.|.|.+.|..
T Consensus 99 P~~~~tPvnIiGRdlLtqlG~t 120 (124)
T 2rsp_A 99 PAVAMVRGSILGRDCLQGLGLR 120 (124)
T ss_dssp CEEESCSSEEECHHHHHHTTCE
T ss_pred cCCCCCceeEECHhHHhhCCcE
Confidence 6311 1 238999999999984
No 12
>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3
Probab=96.75 E-value=0.00069 Score=51.82 Aligned_cols=94 Identities=13% Similarity=0.061 Sum_probs=59.0
Q ss_pred CeeEEEEEcCCCccccccHHHHHHhC----------CccC---------CCceeEEEEcCCce--------eccCCceec
Q 039109 101 KASLTILIDSGSTHNFLHHKFAKITG----------LKSE---------PGCLLSVVVANGEK--------LTSPGRCKG 153 (233)
Q Consensus 101 ~~~~~~LiDSGAt~nfIs~~~a~~l~----------l~~~---------~~~~~~v~~a~G~~--------~~~~~~~~~ 153 (233)
|.++.|=|||||..|-|+..-++.+. +... ......|+..+|.. ... -..-.
T Consensus 17 g~~~~AKiDTGA~TSSLhA~dI~~Ferdg~~wVrF~~~~~~~~~~~e~pv~~~~~Ik~s~g~~~~~~~~~~~e~-R~VV~ 95 (146)
T 2pma_A 17 NLTLSAKLDTGAKSASLHAVNITEIEKKGIPYLRFTVPTKTGDYSFEGEYVGKVKIKVRSSETNPGLLRTTPIK-RPVVL 95 (146)
T ss_dssp TEEEEEEECTTCSSEEEECEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEEEEEC---------------CCE-EEEEE
T ss_pred CCEEEEEecCCcCcceecceeEEEeeeCCCcEEEEEEecCCCCceEEEEeEEEEEEecCCCccccccccCCccc-ccEEE
Confidence 55688999999999988876554221 1000 01222344445541 111 12236
Q ss_pred eeEeecceeEEEEEEEeecC--CCccccchhHHhhhCCeEEEccc
Q 039109 154 VQLQLQGTQIEAYFYLLSLE--GCDAVLGAQWLCTLGSILWDFDK 196 (233)
Q Consensus 154 ~~~~i~g~~~~~~~~Vl~l~--~~d~ILG~dwL~~~~~i~id~~~ 196 (233)
..+.+++....+.|.+.+-. .|.++||.+||+..+. .+|-..
T Consensus 96 ~~i~lG~~~~~ie~tLtdRs~m~ypmLLGR~~L~~~~~-lVD~s~ 139 (146)
T 2pma_A 96 LNIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNG-AVDPAL 139 (146)
T ss_dssp EEEEETTEEEEEEEEEECCCCCSCSEEECHHHHHHTTE-EEETTC
T ss_pred EEEEECCEEEEEEEEEcCCCcCCCCEEechhHHhhCCE-EECCch
Confidence 78899999999999999865 5999999999988776 487654
No 13
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=95.65 E-value=0.028 Score=40.82 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=54.0
Q ss_pred EEEEeeC-----CeeEEEEEcCCCccccccHHHHHHhCCccC-CCceeEEEEcCCceeccCCceeceeEeecc----eeE
Q 039109 94 RLQSSIS-----KASLTILIDSGSTHNFLHHKFAKITGLKSE-PGCLLSVVVANGEKLTSPGRCKGVQLQLQG----TQI 163 (233)
Q Consensus 94 ~v~~~i~-----~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~-~~~~~~v~~a~G~~~~~~~~~~~~~~~i~g----~~~ 163 (233)
.+..+|+ |+.+.+|+||||..+.+.. ..++.. ...+.++..+-|+... ......+++.+-. .+.
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~-----~~lPg~Wkp~~tkiiGGiGg~~~-~~qs~~~pv~i~lpfr~~pv 85 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPI-----ALFSSNTPLKNTSVLGAGGQTQD-HFKLTSLPVLIRLPFRTTPI 85 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEG-----GGSCTTCCEEECCEEETTEEESS-SEEEESSCEEEECTTCCSCE
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEec-----ccCCCCCcccccceEeeccccee-eeEecCCCeEEEeccCCcce
Confidence 4567788 9999999999999999874 444432 1111145555555433 2333445555443 223
Q ss_pred EEEEEEeecCCCccccchhHHhhhCC
Q 039109 164 EAYFYLLSLEGCDAVLGAQWLCTLGS 189 (233)
Q Consensus 164 ~~~~~Vl~l~~~d~ILG~dwL~~~~~ 189 (233)
......++..+.=-|+|.|-|++.+.
T Consensus 86 ~l~~~lv~~~~~w~iigRd~l~q~q~ 111 (116)
T 3liy_A 86 VLTSCLVDTKNNWAIIGRDALQQCQG 111 (116)
T ss_dssp EESSCEEETTSCCCEECHHHHHHTTC
T ss_pred eeceEEEcCCCceeEechhHHhhhcc
Confidence 33333333333446899999999876
No 14
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=95.44 E-value=0.061 Score=45.95 Aligned_cols=93 Identities=15% Similarity=0.180 Sum_probs=59.9
Q ss_pred eeEEEEEcCCCccccccHH----HHHHhCCccCCCceeEEEEcCCceeccCCc-eeceeEeecceeEEEE----------
Q 039109 102 ASLTILIDSGSTHNFLHHK----FAKITGLKSEPGCLLSVVVANGEKLTSPGR-CKGVQLQLQGTQIEAY---------- 166 (233)
Q Consensus 102 ~~~~~LiDSGAt~nfIs~~----~a~~l~l~~~~~~~~~v~~a~G~~~~~~~~-~~~~~~~i~g~~~~~~---------- 166 (233)
....++||||++..++.+. +++.+.-..... .+-.+.|... .+.+.+.++|..+.+.
T Consensus 211 ~~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~--------g~~~~~C~~~~~p~i~f~f~g~~~~ip~~~~~~~~~~ 282 (325)
T 2apr_A 211 SSFDGILDTGTTLLILPNNIAASVARAYGASDNGD--------GTYTISCDTSAFKPLVFSINGASFQVSPDSLVFEEFQ 282 (325)
T ss_dssp CCEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSS--------SCEEECSCGGGCCCEEEEETTEEEEECGGGGEEEEET
T ss_pred CCceEEEecCCccEECCHHHHHHHHHHHhcccCCC--------CeEEEECCCCCCCcEEEEECCEEEEECHHHEEEcCCC
Confidence 3568999999999999999 777665432211 1112234332 4566666665444321
Q ss_pred --EE--EeecCCCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 167 --FY--LLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 167 --~~--Vl~l~~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+. +.+..+-..|||..||+.+-.+ .|+.+++|-|..
T Consensus 283 ~~C~~~i~~~~~~~~iLG~~fl~~~y~v-fD~~~~~igfA~ 322 (325)
T 2apr_A 283 GQCIAGFGYGNWGFAIIGDTFLKNNYVV-FNQGVPEVQIAP 322 (325)
T ss_dssp TEEEESEEEESSSSEEECHHHHTTEEEE-EETTTTEEEEEE
T ss_pred CeEEEEEEcCCCCCEEECHHHhcceEEE-EECCCCEEEEEe
Confidence 11 1222233579999999999874 999999999875
No 15
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=94.99 E-value=0.14 Score=46.14 Aligned_cols=102 Identities=11% Similarity=0.098 Sum_probs=68.0
Q ss_pred EeeCC---eeEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCc-eeccC-CceeceeEeecceeEEEEE----
Q 039109 97 SSISK---ASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE-KLTSP-GRCKGVQLQLQGTQIEAYF---- 167 (233)
Q Consensus 97 ~~i~~---~~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~-~~~~~-~~~~~~~~~i~g~~~~~~~---- 167 (233)
..+++ ....++||||++..++....+..+.-...... ...+|. .+.|. ...+.+.+.++|..+.+..
T Consensus 322 I~Vgg~~~~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~----~~~~g~y~v~C~~~~~P~itf~fgg~~i~lp~~~yi 397 (451)
T 3qvc_A 322 VHFGNVSSKKANVILDSATSVITVPTEFFNQFVESASVFK----VPFLSLYVTTCGNTKLPTLEYRSPNKVYTLEPKQYL 397 (451)
T ss_dssp EEETTEEEEEEEEEECTTBSSEEECHHHHHHHHTTTTCEE----CTTSSCEEEETTCTTCCCEEEEETTEEEEECHHHHE
T ss_pred EEECCccCCCceEEEeCCCccccCCHHHHHHHHHHcCCee----cCCCCeEEeeCCcCcCCcEEEEECCEEEEEcHHHhe
Confidence 44555 46789999999999999999988754432110 001222 23444 3456788888887766431
Q ss_pred -------------EEeecC--CCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 168 -------------YLLSLE--GCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 168 -------------~Vl~l~--~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
.+.+.. +...|||..||+.+-.+ .|+.++++-|..
T Consensus 398 ~~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~YvV-fD~~n~rIGfA~ 447 (451)
T 3qvc_A 398 EPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTV-YDYDNHTVGFAL 447 (451)
T ss_dssp EECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEEE-EETTTTEEEEEE
T ss_pred eecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEEE-EECCCCEEEEEE
Confidence 112222 23479999999999884 999999998875
No 16
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=94.72 E-value=0.074 Score=45.38 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=65.3
Q ss_pred CeeEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCc-eeccCCceeceeEeecceeEEEE-------------
Q 039109 101 KASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE-KLTSPGRCKGVQLQLQGTQIEAY------------- 166 (233)
Q Consensus 101 ~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~-~~~~~~~~~~~~~~i~g~~~~~~------------- 166 (233)
.....++||||++..++....++.+.-...... ....+|. .+.|....+.+.+.++|..+.+.
T Consensus 206 ~~~~~aiiDSGTs~~~lp~~~~~~i~~~i~ga~---~~~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~ 282 (323)
T 1izd_A 206 SDSITGIADTGTTLLLLDDSIVDAYYEQVNGAS---YDSSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVGNGQ 282 (323)
T ss_dssp CCCEEEEECTTCCSEEECHHHHHHHHTTSTTCE---EETTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEEEECSTTE
T ss_pred CCCceEEEeCCCcceeCCHHHHHHHHHhCCCcE---EcCcCCEEEEECCCCCceEEEEECCEEEecCHHHeEEecCCCCe
Confidence 456789999999999999999988754331110 0111222 23455455678888888766542
Q ss_pred EE--EeecC-CCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 167 FY--LLSLE-GCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 167 ~~--Vl~l~-~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+. +.+.. +-..|||..||+.+-.+ .|+.+++|-|..
T Consensus 283 C~~~i~~~~~~~~~IlG~~fl~~~y~v-fD~~~~riGfA~ 321 (323)
T 1izd_A 283 TFGGIQSNSGIGFSIFGDVFLKSQYVV-FDASGPRLGFAA 321 (323)
T ss_dssp EEESEEECTTTSSEEECHHHHTTEEEE-EETTTTEEEEEE
T ss_pred EEEEEEcCCCCCcEEEChHHhcCEEEE-EECCCCEEEEee
Confidence 11 12222 23579999999999874 999999998864
No 17
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=94.54 E-value=0.12 Score=44.24 Aligned_cols=94 Identities=12% Similarity=0.138 Sum_probs=63.9
Q ss_pred EEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCC--c--eeccCC--ceeceeEeecceeEEEE-----------
Q 039109 104 LTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANG--E--KLTSPG--RCKGVQLQLQGTQIEAY----------- 166 (233)
Q Consensus 104 ~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G--~--~~~~~~--~~~~~~~~i~g~~~~~~----------- 166 (233)
..++||||++..++.+..++.+.-..... . ..+| . .+.|.. ..+.+.+.++|..+.+.
T Consensus 214 ~~aiiDSGTs~~~lP~~~~~~l~~~~~~~-~----~~~g~~~~~~~~C~~~~~~p~i~f~fgg~~~~l~~~~y~~~~~~~ 288 (330)
T 1yg9_A 214 TQAIIDTSKAIIVGPKAYVNPINEAIGCV-V----EKTTTRRICKLDCSKIPSLPDVTFVINGRNFNISSQYYIQQNGNL 288 (330)
T ss_dssp CEEEECTTCSSEEEEHHHHHHHHHHHTCE-E----EECSSCEEEEECGGGGGGSCCEEEEETTEEEEECHHHHEEEETTE
T ss_pred cEEEEecCCccccCCHHHHHHHHHHhCCc-c----cCCCceEEEEEECCCccccCcEEEEECCEEEEECHHHhcccCCCc
Confidence 57999999999999998888764333211 1 1234 1 344543 35678888888777643
Q ss_pred EE--EeecC-CCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 167 FY--LLSLE-GCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 167 ~~--Vl~l~-~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+. +.+.. +-..|||..||+.+-.+ .|+.+++|-|..
T Consensus 289 C~~~i~~~~~~~~~ilG~~fl~~~y~v-fD~~~~riGfA~ 327 (330)
T 1yg9_A 289 CYSGFQPCGHSDHFFIGDFFVDHYYSE-FNWENKTMGFGR 327 (330)
T ss_dssp EEESEEEETTCSSEEECHHHHTTEEEE-EETTTTEEEEEE
T ss_pred EEEEEEeCCCCCeEEecHHHhhheEEE-EECCCCEEEEEE
Confidence 11 22322 33589999999999874 999999998875
No 18
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=94.49 E-value=0.11 Score=44.32 Aligned_cols=93 Identities=13% Similarity=0.102 Sum_probs=61.9
Q ss_pred EEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCc-eeccCC--ceeceeEeecceeEEEE-----------EE-
Q 039109 104 LTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE-KLTSPG--RCKGVQLQLQGTQIEAY-----------FY- 168 (233)
Q Consensus 104 ~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~-~~~~~~--~~~~~~~~i~g~~~~~~-----------~~- 168 (233)
..++||||++..++....++.+.-..... ..+|. .+.|.. ..+.+.+.++|..+.+. +.
T Consensus 209 ~~aiiDSGTt~~~lp~~~~~~l~~~~~~~------~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~~~C~~ 282 (324)
T 1am5_A 209 CQAIVDTGTSKIVAPVSALANIMKDIGAS------ENQGEMMGNCASVQSLPDITFTINGVKQPLPPSAYIEGDQAFCTS 282 (324)
T ss_dssp EEEEECTTCSSEEECTTTHHHHHHHHTCE------ECCCCEECCTTSSSSSCCEEEEETTEEEEECHHHHEEESSSCEEE
T ss_pred ceEEEecCCccEECCHHHHHHHHHHhCCc------ccCCcEEEeCCCcccCCcEEEEECCEEEEECHHHhcccCCCeEEE
Confidence 67999999999999888777653222111 12332 234432 34677888888766542 11
Q ss_pred -Eeec-----CCCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 169 -LLSL-----EGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 169 -Vl~l-----~~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+.+. .+...|||..||+.+-.+ .|+.++++-|..
T Consensus 283 ~~~~~~~~~~~~~~~ilG~~fl~~~y~v-fD~~~~~igfa~ 322 (324)
T 1am5_A 283 GLGSSGVPSNTSELWIFGDVFLRNYYTI-YDRTNNKVGFAP 322 (324)
T ss_dssp CEEECCSCCSSSCEEEECHHHHHHEEEE-EETTTTEEEEEE
T ss_pred EEEECccCCCCCCcEEEChHHhccEEEE-EECCCCEEEEEE
Confidence 2232 134579999999999874 999999998864
No 19
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=94.44 E-value=0.13 Score=43.67 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=62.1
Q ss_pred eEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCc-eeccCC--ceeceeEeecceeEEEE-----------EE
Q 039109 103 SLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE-KLTSPG--RCKGVQLQLQGTQIEAY-----------FY 168 (233)
Q Consensus 103 ~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~-~~~~~~--~~~~~~~~i~g~~~~~~-----------~~ 168 (233)
...++||||++..++....++.+.-..... ...+|. .+.|.. ..+.+.+.++|..+.+. +.
T Consensus 207 ~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~-----~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~C~ 281 (320)
T 4aa9_A 207 GCQAILDTGTSVLFGPSSDILKIQMAIGAT-----ENRYGEFDVNCGNLRSMPTVVFEINGRDYPLSPSAYTSKDQGFCT 281 (320)
T ss_dssp CEEEEECTTCSSEEEEHHHHHHHHHHTTCE-----ECTTSCEEECGGGGGGCCCEEEEETTEEEEECHHHHEEEETTEEE
T ss_pred CcEEEEECCCCcEECCHHHHHHHHHHhCCc-----ccCCCcEEEeCCCCCcCceEEEEECCEEEEECHHHhccCCCCeEE
Confidence 457999999999999988887764332111 012232 223432 34567888888766543 11
Q ss_pred --Eeec-CCCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 169 --LLSL-EGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 169 --Vl~l-~~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+.+. .+-..|||..||+.+-.+ .|+.++++-|..
T Consensus 282 ~~i~~~~~~~~~ilG~~fl~~~y~v-fD~~~~~igfA~ 318 (320)
T 4aa9_A 282 SGFQGDNNSELWILGDVFIREYYSV-FDRANNRVGLAK 318 (320)
T ss_dssp ESEEEETTCCCEEECHHHHTTEEEE-EETTTTEEEEEE
T ss_pred EEEEcCCCCCcEEEChHHhcceEEE-EECCCCEEEEEe
Confidence 2222 123489999999999874 999999998864
No 20
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=94.31 E-value=0.18 Score=42.95 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=61.5
Q ss_pred EEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCce-eccC--CceeceeEeecceeEEEE-----------EE-
Q 039109 104 LTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEK-LTSP--GRCKGVQLQLQGTQIEAY-----------FY- 168 (233)
Q Consensus 104 ~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~~-~~~~--~~~~~~~~~i~g~~~~~~-----------~~- 168 (233)
..++||||++..++....++.+.-..... + ..+|.. +.|. ...+.+.+.++|..+.+. +.
T Consensus 211 ~~aiiDSGTt~~~lP~~~~~~l~~~~~~~-~----~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~~~C~~ 285 (323)
T 3cms_A 211 CQAILDTGTSKLVGPSSDILNIQQAIGAT-Q----NQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQDQGFCTS 285 (323)
T ss_dssp EEEEECTTCCSEEECHHHHHHHHHHHTCE-E----ETTTEEEECTTCTTTSCCEEEEETTEEEEECHHHHEEEETTEEEE
T ss_pred cEEEEecCCccEeCCHHHHHHHHHHhCCe-e----cCCCcEEEECCCCccCceEEEEECCEEEEECHHHhccCCCCEEEE
Confidence 47999999999999988877664332211 0 122322 2343 234678888888766542 21
Q ss_pred -Eeec-CCCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 169 -LLSL-EGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 169 -Vl~l-~~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+.+. .+-..|||..||+.+-.+ .|+.+++|-|..
T Consensus 286 ~i~~~~~~~~~iLG~~fl~~~y~v-fD~~~~~igfA~ 321 (323)
T 3cms_A 286 GFQSENHSQKWILGDVFIREYYSV-FDRANNLVGLAK 321 (323)
T ss_dssp SEEEC---CCEEECHHHHTTEEEE-EETTTTEEEEEE
T ss_pred EEEeCCCCCcEEECHHHhhceEEE-EECCCCEEEEEE
Confidence 2232 234589999999999874 999999998864
No 21
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=94.20 E-value=0.14 Score=43.66 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=64.9
Q ss_pred eeEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCc-eeccCCceeceeEeecceeEEEE--------------
Q 039109 102 ASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE-KLTSPGRCKGVQLQLQGTQIEAY-------------- 166 (233)
Q Consensus 102 ~~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~-~~~~~~~~~~~~~~i~g~~~~~~-------------- 166 (233)
....++||||++..++.+..++.+.-...... ....+|. .+.|....+.+.+.++|..+.+.
T Consensus 206 ~~~~aiiDSGTs~~~lP~~~~~~l~~~i~~a~---~~~~~g~~~~~C~~~~P~i~f~fgg~~~~l~~~~~~~~~~~~~~~ 282 (323)
T 1bxo_A 206 DGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQ---QDSNAGGYVFDCSTNLPDFSVSISGYTATVPGSLINYGPSGDGST 282 (323)
T ss_dssp EEEEEEECTTCSSEEECHHHHHHHHTTSTTCE---EETTTTEEEECTTCCCCCEEEEETTEEEEECHHHHEEEECSSSSC
T ss_pred CCceEEEeCCCCceeCCHHHHHHHHHhCCCce---EcCcCCEEEEECCCCCceEEEEECCEEEEECHHHeEEeccCCCCe
Confidence 45789999999999999999988754431110 0112232 24455555678888888766532
Q ss_pred EE--EeecC-CCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 167 FY--LLSLE-GCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 167 ~~--Vl~l~-~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+. +.+.. +-..|||..||+.+-.+ .|+.+++|-|..
T Consensus 283 C~~~i~~~~~~~~~ILG~~fl~~~y~v-fD~~~~riGfA~ 321 (323)
T 1bxo_A 283 CLGGIQSNSGIGFSIFGDIFLKSQYVV-FDSDGPQLGFAP 321 (323)
T ss_dssp EEESEEECTTCSSEEECHHHHTTEEEE-EETTTTEEEEEE
T ss_pred EEEEEECCCCCCcEEEChHHHcCEEEE-EECCCCEEEEec
Confidence 11 11221 23479999999999874 999999998864
No 22
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=94.04 E-value=0.18 Score=43.01 Aligned_cols=98 Identities=11% Similarity=0.119 Sum_probs=63.3
Q ss_pred eeEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCC-ceeccCCceeceeEeecceeEEEE--------------
Q 039109 102 ASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANG-EKLTSPGRCKGVQLQLQGTQIEAY-------------- 166 (233)
Q Consensus 102 ~~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G-~~~~~~~~~~~~~~~i~g~~~~~~-------------- 166 (233)
....++||||++..++.+..++.+.-....... ...+| -.+.|....+.+.+.++|..+.+.
T Consensus 207 ~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~~---~~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~~ 283 (325)
T 1ibq_A 207 SGFSAIADTGTTLILLDDEIVSAYYEQVSGAQE---SYEAGGYVFSCSTDLPDFTVVIGDYKAVVPGKYINYAPVSTGSS 283 (325)
T ss_dssp CCEEEEECTTCCSEEECHHHHHHHHTTSTTCBC---CSSSSSCEEETTCCCCCEEEEETTEEEEECHHHHEEEESSTTCS
T ss_pred CCceEEEeCCCCcEeCCHHHHHHHHHhCCCceE---cCcCCeEEEEcCCCCCcEEEEECCEEEEECHHHhcccccCCCCC
Confidence 457899999999999999998887544311100 00112 123455455677778877665432
Q ss_pred -EE--EeecC-CCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 167 -FY--LLSLE-GCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 167 -~~--Vl~l~-~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+. +.+.. +-..|||..||+.+-.+ .|+.+++|-|..
T Consensus 284 ~C~~~i~~~~~~~~~iLG~~fl~~~y~v-fD~~~~~igfA~ 323 (325)
T 1ibq_A 284 TCYGGIQSNSGLGLSILGDVFLKSQYVV-FNSEGPKLGFAA 323 (325)
T ss_dssp EEEESEEECTTTCSEEECHHHHTTEEEE-EETTTTEEEEEE
T ss_pred eEEEEEEcCCCCCceEEChHHhcCEEEE-EECCCCEEEeee
Confidence 11 11221 23479999999999874 999999998864
No 23
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=94.02 E-value=0.14 Score=41.63 Aligned_cols=95 Identities=14% Similarity=0.196 Sum_probs=60.8
Q ss_pred eEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCc-eeccCC--ceeceeEeecceeEEEE-------------
Q 039109 103 SLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE-KLTSPG--RCKGVQLQLQGTQIEAY------------- 166 (233)
Q Consensus 103 ~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~-~~~~~~--~~~~~~~~i~g~~~~~~------------- 166 (233)
...+++|||++..++....++.+.-..... . ..+|. .+.|.. ..+.+.+.++|..+.+.
T Consensus 120 ~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~-~----~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~ 194 (241)
T 1lya_B 120 GCEAIVDTGTSLMVGPVDEVRELQKAIGAV-P----LIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGK 194 (241)
T ss_dssp CEEEEECTTCSSEEECHHHHHHHHHHHTCE-E----EETTEEEEEGGGGGGSCCEEEEETTEEEEECTTTSEEEETTTTS
T ss_pred CCEEEEECCCccccCCHHHHHHHHHHhCCe-e----ccCCcEEEECCCCccCCeEEEEECCEEEEECHHHhEEEccCCCC
Confidence 467999999999999998887764332111 0 11232 233432 24567777777655432
Q ss_pred --EE--Eeec-----CCCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 167 --FY--LLSL-----EGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 167 --~~--Vl~l-----~~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+. +.+. .+...|||..||+.+-.+ .|+.++++-|..
T Consensus 195 ~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~v-fD~~~~~igfA~ 239 (241)
T 1lya_B 195 TLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTV-FDRDNNRVGFAE 239 (241)
T ss_dssp SEEEESEEECCCCTTTCCCEEECHHHHTTEEEE-EETTTTEEEEEE
T ss_pred CeeEEEEEecccCCCCCCeEEechHHhcceEEE-EECCCCEEEEEE
Confidence 11 2222 134579999999999874 999999998864
No 24
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=93.97 E-value=0.24 Score=42.13 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=60.1
Q ss_pred EEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCce-eccCC--ceeceeEeecceeEEEE-----------EE-
Q 039109 104 LTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEK-LTSPG--RCKGVQLQLQGTQIEAY-----------FY- 168 (233)
Q Consensus 104 ~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~~-~~~~~--~~~~~~~~i~g~~~~~~-----------~~- 168 (233)
..++||||++..++....++.+.-..... ...+|.. +.|.. ..+.+.+.++|..+.+. +.
T Consensus 213 ~~aiiDSGTt~~~lP~~~~~~l~~~~~~~-----~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~~~C~~ 287 (329)
T 1dpj_A 213 HGAAIDTGTSLITLPSGLAEMINAEIGAK-----KGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVSGSCIS 287 (329)
T ss_dssp CEEEECTTCSCEEECHHHHHHHHHHHTCE-----ECTTSSEEECGGGGGGCCCEEEEETTEEEEECTTTSEEEETTEEEE
T ss_pred ccEEeeCCCCcEECCHHHHHHHHHHhCCc-----cCCCCeEEEECCCCCcCCcEEEEECCEEEEECHHHhEecCCCEEEE
Confidence 46999999999999998887764322111 1122322 23432 23567777777655432 11
Q ss_pred -Eeec-----CCCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 169 -LLSL-----EGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 169 -Vl~l-----~~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+.+. .+-..|||..||+.+-.+ .|+.+++|-|..
T Consensus 288 ~~~~~~~~~~~~~~~iLG~~fl~~~y~v-fD~~~~~igfA~ 327 (329)
T 1dpj_A 288 AITPMDFPEPVGPLAIVGDAFLRKYYSI-YDLGNNAVGLAK 327 (329)
T ss_dssp CEEECCCCTTTCSEEEECHHHHTTEEEE-EETTTTEEEEEE
T ss_pred EEEecccCCCCCCcEEEChHHhcceEEE-EECCCCEEEEEE
Confidence 2232 123579999999999874 999999998864
No 25
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=93.86 E-value=0.29 Score=41.73 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=63.1
Q ss_pred eeEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCce-eccCCceeceeEeecceeEEEE--------------
Q 039109 102 ASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEK-LTSPGRCKGVQLQLQGTQIEAY-------------- 166 (233)
Q Consensus 102 ~~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~~-~~~~~~~~~~~~~i~g~~~~~~-------------- 166 (233)
....++||||++..++...+++.+.-...... ....+|.. +.|....+.+.+.++|..+.+.
T Consensus 212 ~~~~aiiDSGTt~~~lp~~~~~~i~~~i~~a~---~~~~~~~~~~~C~~~~P~i~f~f~g~~~~ip~~~~~~~~~~~~~~ 288 (329)
T 3c9x_A 212 NSIDGIADTGTTLLLLDDNVVDAYYANVQSAQ---YDNQQEGVVFDCDEDLPSFSFGVGSSTITIPGDLLNLTPLEEGSS 288 (329)
T ss_dssp CCEEEEECTTCCSEEECHHHHHHHHTTCTTCE---EETTTTEEEEETTCCCCCEEEEETTEEEEECGGGGEEEESSTTCS
T ss_pred CCceEEEECCCCcEeCCHHHHHHHHHhCCCcE---EcCCCCEEEEECCCCCCcEEEEECCEEEEECHHHeeeeccCCCCC
Confidence 45789999999999999999887754432110 01112221 3455445677777777655432
Q ss_pred -EE--EeecC-CCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 167 -FY--LLSLE-GCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 167 -~~--Vl~l~-~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+. +.+.. .-..|||..||+.+-.+ .|+.+++|-|..
T Consensus 289 ~C~~~i~~~~~~~~~ILG~~fl~~~y~v-fD~~~~riGfA~ 328 (329)
T 3c9x_A 289 TCFGGLQSSSGIGINIFGDVALKAALVV-FDLGNERLGWAQ 328 (329)
T ss_dssp EEEESEEECTTTTSEEECHHHHTTEEEE-EETTTTEEEEEE
T ss_pred eEEEEEEcCCCCCcEEEChHHhccEEEE-EECCCCEEeEec
Confidence 11 11222 23479999999999874 999999998864
No 26
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=93.71 E-value=0.24 Score=43.21 Aligned_cols=102 Identities=15% Similarity=0.154 Sum_probs=63.9
Q ss_pred EeeCCe---eEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCc-eeccCC-ceeceeEeecceeEEEE-----
Q 039109 97 SSISKA---SLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE-KLTSPG-RCKGVQLQLQGTQIEAY----- 166 (233)
Q Consensus 97 ~~i~~~---~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~-~~~~~~-~~~~~~~~i~g~~~~~~----- 166 (233)
..++++ ...++||||++..++....+..+.-..... ....+|. .+.|.. ..+.+.+.++|..+.+.
T Consensus 247 i~v~g~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~----~~~~~g~~~~~C~~~~~P~i~f~f~g~~~~l~~~~yi 322 (375)
T 1miq_A 247 VHFGKQTMEKANVIVDSGTTTITAPSEFLNKFFANLNVI----KVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYM 322 (375)
T ss_dssp EEETTEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCE----ECTTSSCEEEETTCTTCCCEEEECSSCEEEECGGGSE
T ss_pred EEECCEEcccceEEecCCCccEEcCHHHHHHHHHHhCCc----ccCCCCeEEEECCCCCCCcEEEEECCEEEEECHHHhE
Confidence 556774 568999999999999988887653222110 0011221 123432 34566777776555431
Q ss_pred ----------E--EEeecC--CCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 167 ----------F--YLLSLE--GCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 167 ----------~--~Vl~l~--~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+ .+.+.. .-..|||..||+.+-.+ .|+.+.+|-|..
T Consensus 323 ~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvv-fD~~~~riGfA~ 372 (375)
T 1miq_A 323 NPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTV-FDYDKESVGFAI 372 (375)
T ss_dssp EESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEE-EETTTTEEEEEE
T ss_pred eeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEEEE-EECCCCEEEEEE
Confidence 1 122222 13579999999999874 999999998875
No 27
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=93.68 E-value=0.14 Score=43.79 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=58.9
Q ss_pred EEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCC-ceeccCC-ceeceeEeec-ceeEEEEE--EEeecC-----
Q 039109 104 LTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANG-EKLTSPG-RCKGVQLQLQ-GTQIEAYF--YLLSLE----- 173 (233)
Q Consensus 104 ~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G-~~~~~~~-~~~~~~~~i~-g~~~~~~~--~Vl~l~----- 173 (233)
..++||||++..++...+++.+.-....... ......| -.+.|.. ..+.+.+.++ |..+.+.. ++++..
T Consensus 215 ~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~-~~~~~~~~~~~~C~~~~~p~i~f~f~~g~~~~v~~~~~~~~~~~~~C~ 293 (339)
T 3fv3_A 215 DGALLDSGTTLTYFPSDFAAQLADKAGARLV-QVARDQYLYFIDCNTDTSGTTVFNFGNGAKITVPNTEYVYQNGDGTCL 293 (339)
T ss_dssp EEEEECTTBSSEEECHHHHHHHHHHHTCEEE-EEETTEEEEEECTTCCCCSEEEEEETTSCEEEEEGGGGEEECSSSCEE
T ss_pred ccEEEeCCCCCEecCHHHHHHHHHHcCCEEc-cccccCceEEEecCCCCCCcEEEEECCCCEEEECHHHheeeCCCCeEE
Confidence 4699999999999999888776433321100 0000111 1123332 2456677773 55554321 111110
Q ss_pred -----CCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 174 -----GCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 174 -----~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
.-..|||..||+.+-. ..|+.++++.|..
T Consensus 294 ~~i~~~~~~ilG~~fl~~~y~-vfD~~~~~igfA~ 327 (339)
T 3fv3_A 294 WGIQPSDDTILGDNFLRHAYL-LYNLDANTISIAQ 327 (339)
T ss_dssp ESEEECSSCEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred EEEEeCCcEEeChHHHhCEEE-EEECCCCEEEEEe
Confidence 1247999999999987 4999999999975
No 28
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=93.52 E-value=0.13 Score=43.90 Aligned_cols=95 Identities=12% Similarity=0.051 Sum_probs=61.8
Q ss_pred eEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCceeccCC--ceeceeEeecceeEEEEE-------------
Q 039109 103 SLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPG--RCKGVQLQLQGTQIEAYF------------- 167 (233)
Q Consensus 103 ~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~~~~~~~--~~~~~~~~i~g~~~~~~~------------- 167 (233)
...++||||++..++....++.+.-...... ..+|-.+.|.. ..+.+.+.++|..+.+..
T Consensus 220 ~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~-----~~~g~~~~C~~~~~~p~i~f~f~g~~~~l~~~~~~~~~~~~~~~ 294 (341)
T 3k1w_A 220 GCLALVDTGASYISGSTSSIEKLMEALGAKK-----RLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKK 294 (341)
T ss_dssp CEEEEECTTCSSEEECHHHHHHHHHHHTCEE-----CSSCEEEEGGGGGGCCCEEEEETTEEEEECHHHHBCCSCCCTTS
T ss_pred CCEEEEECCCChhcCCHHHHHHHHHHcCCee-----cCCCeEEeCCCCCcCCcEEEEECCEEEEECHHHheeEccCCCCC
Confidence 4689999999999999888777643221110 12232333432 345677888877665421
Q ss_pred ----EEeec-----CCCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 168 ----YLLSL-----EGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 168 ----~Vl~l-----~~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
.+.+. .+...|||..||+.+-.+ .|+.++++.|..
T Consensus 295 ~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~v-fD~~~~~igfA~ 338 (341)
T 3k1w_A 295 LCTLAIHAMDIPPPTGPTWALGATFIRKFYTE-FDRRNNRIGFAL 338 (341)
T ss_dssp EEEBSEEECCCCTTTCSCEEECHHHHTTEEEE-EETTTTEEEEEE
T ss_pred eEEeEEEecccCCCCCCeEEEChHHhcceEEE-EeCCCCEEEEEE
Confidence 11121 123579999999999874 999999998875
No 29
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=93.45 E-value=0.38 Score=40.96 Aligned_cols=98 Identities=11% Similarity=0.076 Sum_probs=63.6
Q ss_pred eeEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCc-eeccCCceeceeEeecceeEEEE--------------
Q 039109 102 ASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE-KLTSPGRCKGVQLQLQGTQIEAY-------------- 166 (233)
Q Consensus 102 ~~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~-~~~~~~~~~~~~~~i~g~~~~~~-------------- 166 (233)
....++||||++..++...+++.+.-...... ....+|. .+.|....+.+.+.++|..+.+.
T Consensus 211 ~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~a~---~~~~~g~~~~~C~~~~P~i~f~fgg~~~~ip~~~~~~~~~~~~~~ 287 (329)
T 1oew_A 211 TSIDGIADTGTTLLYLPATVVSAYWAQVSGAK---SSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYIDFGPISTGSS 287 (329)
T ss_dssp EEEEEEECTTCCSEEECHHHHHHHHTTSTTCE---EETTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEEEESSTTCS
T ss_pred CCceEEEeCCCCCEECCHHHHHHHHHhCCCcE---EcCCCCEEEEECCCCCCcEEEEECCEEEEECHHHeeeeecCCCCC
Confidence 35689999999999999999988754331110 0111222 24455455677888877665432
Q ss_pred -EE--EeecC-CCccccchhHHhhhCCeEEEc-cccEEEEEe
Q 039109 167 -FY--LLSLE-GCDAVLGAQWLCTLGSILWDF-DKMEMQFTK 203 (233)
Q Consensus 167 -~~--Vl~l~-~~d~ILG~dwL~~~~~i~id~-~~~~~~f~~ 203 (233)
+. +.+.. +-..|||..||+.+-.+ .|+ .+++|-|..
T Consensus 288 ~C~~~i~~~~~~~~~iLG~~fl~~~y~v-fD~~~~~riGfA~ 328 (329)
T 1oew_A 288 SCFGGIQSSAGIGINIFGDVALKAAFVV-FNGATTPTLGFAS 328 (329)
T ss_dssp EEEESEEESTTTSSEEECHHHHTTEEEE-EECSSSCEEEEEE
T ss_pred eEEEEEEeCCCCCceEEChHHhcCEEEE-EECCCCceEEEec
Confidence 11 11121 23479999999999874 999 999998864
No 30
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=93.44 E-value=0.26 Score=42.43 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=58.7
Q ss_pred EEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCceeccCC--ceeceeEeecceeEEEE---------------
Q 039109 104 LTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPG--RCKGVQLQLQGTQIEAY--------------- 166 (233)
Q Consensus 104 ~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~~~~~~~--~~~~~~~~i~g~~~~~~--------------- 166 (233)
..++||||++..++....++.+.-..... . ..+.-.+.|.. ..+.+.+.++|..+.+.
T Consensus 223 ~~aiiDSGTs~~~lP~~~~~~l~~~~~~~-~----~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~yi~~~~~~~~~~ 297 (351)
T 1tzs_A 223 CQAIVDTGTSLITGPSDKIKQLQNAIGAA-P----VDGEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQF 297 (351)
T ss_dssp EEEEECTTCSSEEECHHHHHHHHHHHTCE-E----CSSSEEECGGGGGGSCCEEEEETTEEEEECTTTSEECC-----CC
T ss_pred ceEEeccCCcceeCCHHHHHHHHHHhCCc-c----cCCeEEEeCCCCccCCcEEEEECCEEEEECHHHhEeeccCCCCCe
Confidence 57999999999999988887663222111 0 00111123332 23456666666555421
Q ss_pred EE--Eeec-----CCCccccchhHHhhhCCeEEEccccEEEEEeC
Q 039109 167 FY--LLSL-----EGCDAVLGAQWLCTLGSILWDFDKMEMQFTKD 204 (233)
Q Consensus 167 ~~--Vl~l-----~~~d~ILG~dwL~~~~~i~id~~~~~~~f~~~ 204 (233)
+. +.+. .+...|||..||+.+-.+ .|+.++++-|...
T Consensus 298 C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~v-fD~~~~rigfA~~ 341 (351)
T 1tzs_A 298 CSSGFQGLDIHPPAGPLWILGDVFIRQFYSV-FDRGNNRVGLAPA 341 (351)
T ss_dssp EEESEEECCCCTTTCSCEEECHHHHHHEEEE-EETTTTEEEEEEB
T ss_pred EEEEEEECCCCCCCCCeEEEChHHhhheEEE-EECCCCEEEEEEC
Confidence 11 2222 134579999999999874 9999999999753
No 31
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=93.37 E-value=0.35 Score=43.45 Aligned_cols=95 Identities=11% Similarity=0.117 Sum_probs=64.7
Q ss_pred eEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCC--ceeccCC-ceeceeEeecceeEEEE-------------
Q 039109 103 SLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANG--EKLTSPG-RCKGVQLQLQGTQIEAY------------- 166 (233)
Q Consensus 103 ~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G--~~~~~~~-~~~~~~~~i~g~~~~~~------------- 166 (233)
...++||||++..++....++.+.-..... ...+| -.+.|.. ..+.+.+.++|..+.+.
T Consensus 332 ~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~-----~~~~g~~~~v~C~~~~~P~itf~fgg~~~~l~~~~yi~~~~~~g~ 406 (453)
T 2bju_A 332 KANCIVDSGTSAITVPTDFLNKMLQNLDVI-----KVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGP 406 (453)
T ss_dssp EEEEEECTTCCSEEECHHHHHHHTTTSSCE-----ECTTSSCEEEETTCTTCCCEEEECSSCEEEECHHHHEEECTTTST
T ss_pred cccEEEcCCCCeEecCHHHHHHHHHHhCCc-----ccCCCceEEEecCCCCCCcEEEEECCEEEEECHHHhEeecccCCC
Confidence 467999999999999999999886444321 12333 2234443 45677888888666532
Q ss_pred --EE--EeecC--CCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 167 --FY--LLSLE--GCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 167 --~~--Vl~l~--~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+. +.+.. .-..|||..||+.+-.+ .|+.+.+|-|..
T Consensus 407 ~~C~~~~~~~~~~~~~~ILGd~Flr~~yvV-FD~~n~rIGfA~ 448 (453)
T 2bju_A 407 GLCMLNIIGLDFPVPTFILGDPFMRKYFTV-FDYDNHSVGIAL 448 (453)
T ss_dssp TEEEECEEECCCSSCEEEECHHHHHHEEEE-EETTTTEEEEEE
T ss_pred ceEEEEEEeCCCCCCCEEECHHHhhcEEEE-EECCCCEEEEEE
Confidence 11 22222 12579999999999874 999999999875
No 32
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=92.99 E-value=0.29 Score=42.93 Aligned_cols=94 Identities=12% Similarity=0.070 Sum_probs=61.9
Q ss_pred eEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCce-eccCC--ceeceeEeecceeEEEE-------------
Q 039109 103 SLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEK-LTSPG--RCKGVQLQLQGTQIEAY------------- 166 (233)
Q Consensus 103 ~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~~-~~~~~--~~~~~~~~i~g~~~~~~------------- 166 (233)
...++||||++..++....++.+.-..... + .+|.. +.|.. ..+.+.+.++|..+.+.
T Consensus 263 ~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~-~-----~~g~~~v~C~~~~~~P~i~f~~~g~~~~l~~~~yi~~~~~~~~ 336 (383)
T 2x0b_A 263 GCLALVDTGASYISGSTSSIEKLMEALGAK-K-----RLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSK 336 (383)
T ss_dssp CEEEEECTTCSSEEECHHHHHHHHHHHTCE-E-----CSSCEEEEGGGTTTCCCEEEEETTEEEEECHHHHBCCCCCCTT
T ss_pred CcEEEEcCCCceEEcCHHHHHHHHHHhCCc-c-----cCCcEEEeccccccCceEEEEECCEEEEECHHHhEeeccCCCC
Confidence 468999999999999988887664332111 0 23322 33432 34677888888766532
Q ss_pred --EE--Eeec-----CCCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 167 --FY--LLSL-----EGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 167 --~~--Vl~l-----~~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+. +.+. .+...|||..||+.+-.+ .|+.+++|-|..
T Consensus 337 ~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~v-fD~~~~rIGfA~ 381 (383)
T 2x0b_A 337 KLCTLAIHAMDIPPPTGPTWALGATFIRKFYTE-FDRRNNRIGFAL 381 (383)
T ss_dssp SEEEBSEEECCCCTTTCSCEEECHHHHTTEEEE-EETTTTEEEEEE
T ss_pred CeEEEEEEecccCCCCCCcEEEChHHhcceEEE-EECCCCEEeEEE
Confidence 11 2222 133579999999999874 999999998864
No 33
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=92.63 E-value=0.14 Score=43.93 Aligned_cols=95 Identities=16% Similarity=0.219 Sum_probs=57.5
Q ss_pred EEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCC-ceeccC--CceeceeEeecceeEEEE--------------
Q 039109 104 LTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANG-EKLTSP--GRCKGVQLQLQGTQIEAY-------------- 166 (233)
Q Consensus 104 ~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G-~~~~~~--~~~~~~~~~i~g~~~~~~-------------- 166 (233)
..++||||++..++....++.+.-..... .....| -.+.|. ...+.+.+.++|..+.+.
T Consensus 207 ~~aiiDSGTt~~~lP~~~~~~l~~~~~a~----~~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~i~~~~yi~~~~~~~~~ 282 (340)
T 1wkr_A 207 TAGIVDTGTTLTLIASDAFAKYKKATGAV----ADNNTGLLRLTTAQYANLQSLFFTIGGQTFELTANAQIWPRNLNTAI 282 (340)
T ss_dssp EEEEECTTBCSEEECHHHHHHHHHHHTCE----ECTTTSSEEECHHHHHTCCCEEEEETTEEEEECTGGGBCCGGGGGGG
T ss_pred CeEEEeCCcccccCCHHHHHHHHHhhCCE----EcCCCCeEEeeccccccCCcEEEEECCEEEEEcHHHhcccccccccc
Confidence 47999999999999998888762211110 000011 112232 123455666666555431
Q ss_pred --------EEEeecC-----CCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 167 --------FYLLSLE-----GCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 167 --------~~Vl~l~-----~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+.+.++. +...|||..||+.+-.+ .|+.+++|-|..
T Consensus 283 g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~v-fD~~~~~igfA~ 331 (340)
T 1wkr_A 283 GGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSV-YDTTNKRLGLAT 331 (340)
T ss_dssp TCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEE-EETTTTEEEEEE
T ss_pred CCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEE-EeCCCCeEEEEe
Confidence 1122322 23479999999999874 999999999875
No 34
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=92.39 E-value=0.35 Score=41.70 Aligned_cols=95 Identities=18% Similarity=0.272 Sum_probs=58.1
Q ss_pred EEEE-EcCCCccccccHHHHHHhCCccCCCceeEEEEcCCce-eccCC--ce-eceeEee--c-----ceeEEEE-----
Q 039109 104 LTIL-IDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEK-LTSPG--RC-KGVQLQL--Q-----GTQIEAY----- 166 (233)
Q Consensus 104 ~~~L-iDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~~-~~~~~--~~-~~~~~~i--~-----g~~~~~~----- 166 (233)
..++ ||||++..++...+++.+.-......+ ..+|.. +.|.. .. +.+.+.+ + |..+.+.
T Consensus 231 ~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~~~----~~~g~~~~~C~~~~~~~p~i~f~f~~g~~~~~g~~~~i~~~~y~ 306 (361)
T 1mpp_A 231 AQAFTIDTGTNFFIAPSSFAEKVVKAALPDAT----ESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDVSVPISKML 306 (361)
T ss_dssp EEEEEEETTCCSEEEEHHHHHHHHHHHCTTCE----EETTEEEEEHHHHTTCCCEEEEEEECTTCSSCEEEEEEEGGGGE
T ss_pred CEEEEECCCCCceeCCHHHHHHHHHHhCCccc----CCCCcEEEECCCcccCCCcEEEEEEcCCcCCCCeEEEECHHHhE
Confidence 4688 999999999998888765322221100 112211 22321 23 5566666 5 4444321
Q ss_pred -----------EEEeecCCCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 167 -----------FYLLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 167 -----------~~Vl~l~~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+.+.+..+-..|||..||+.+-.+ .|+.+++|-|..
T Consensus 307 ~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~yvv-fD~~~~~igfa~ 353 (361)
T 1mpp_A 307 LPVDKSGETCMFIVLPDGGNQFIVGNLFLRFFVNV-YDFGKNRIGFAP 353 (361)
T ss_dssp EECSSSSCEEEESEEEESSSCCEEEHHHHTTEEEE-EETTTTEEEEEE
T ss_pred EecCCCCCeeEEEEEeCCCCCEEEChHHhccEEEE-EECCCCEEEEEE
Confidence 112232344689999999999874 999999999875
No 35
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=92.20 E-value=0.42 Score=40.75 Aligned_cols=91 Identities=15% Similarity=0.232 Sum_probs=56.7
Q ss_pred EEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCC-ce--eccCCceeceeEee-cceeEEEE-------------
Q 039109 104 LTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANG-EK--LTSPGRCKGVQLQL-QGTQIEAY------------- 166 (233)
Q Consensus 104 ~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G-~~--~~~~~~~~~~~~~i-~g~~~~~~------------- 166 (233)
..++||||++..++....++.+.-..... . . ..+ .. ..|.. .+.+.+.+ +|..+.+.
T Consensus 213 ~~~iiDSGTt~~~lP~~~~~~l~~~~~~~--~--~-~~~~~~~~~~C~~-~p~i~f~f~~g~~~~i~~~~y~~~~~~~~~ 286 (334)
T 1j71_A 213 ADVVLDSGTTITYFSQSTADKFARIVGAT--W--D-SRNEIYRLPSCDL-SGDAVFNFDQGVKITVPLSELILKDSDSSI 286 (334)
T ss_dssp EEEEECTTCSSEEECHHHHHHHHHHHTCE--E--E-TTTTEEECSSSCC-CSEEEEEESTTCEEEEEGGGGEEECSSSSC
T ss_pred ccEEEeCCCCcEecCHHHHHHHHHHcCCc--c--c-CCCceEEEEcCCC-CCceEEEEcCCcEEEECHHHheeecCCCCe
Confidence 46899999999999998887663222111 0 0 111 11 23322 44566666 45544432
Q ss_pred EE--EeecCCCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 167 FY--LLSLEGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 167 ~~--Vl~l~~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+. +.+ .-..|||..||+.+-.+ .|+.++++-|..
T Consensus 287 C~~~i~~--~~~~iLG~~fl~~~y~v-fD~~~~~igfA~ 322 (334)
T 1j71_A 287 CYFGISR--NDANILGDNFLRRAYIV-YDLDDKTISLAQ 322 (334)
T ss_dssp EEESEEE--CTTCEECHHHHTTEEEE-EETTTTEEEEEE
T ss_pred eEEEEeE--CCCcEEChHhhccEEEE-EECCCCEEEEEe
Confidence 11 111 12579999999999874 999999999975
No 36
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=92.13 E-value=0.28 Score=43.04 Aligned_cols=95 Identities=16% Similarity=0.103 Sum_probs=54.8
Q ss_pred EEEcCCCccccccHHHHHHhCCccCC-Cce-eEEE-E-cCCceeccCC--ceeceeEeecce---eEEEE----------
Q 039109 106 ILIDSGSTHNFLHHKFAKITGLKSEP-GCL-LSVV-V-ANGEKLTSPG--RCKGVQLQLQGT---QIEAY---------- 166 (233)
Q Consensus 106 ~LiDSGAt~nfIs~~~a~~l~l~~~~-~~~-~~v~-~-a~G~~~~~~~--~~~~~~~~i~g~---~~~~~---------- 166 (233)
++||||++..++.+.+++.+.-.... ... ..+. . ..+-...|.. ..+.+.+.++|. .+.+.
T Consensus 262 aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~~c~~~~~~P~i~f~f~g~~~~~~~l~~~~y~~~~~~ 341 (403)
T 3aup_A 262 TMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQP 341 (403)
T ss_dssp EEECSSCSSEEECHHHHHHHHHHHHHTSCGGGEECCCTTCSCEECGGGCCCCCCEEEEESSTTCCEEEECHHHHEEEC--
T ss_pred EEEECCCccEEeCHHHHHHHHHHHHHHhccccccCCCCCCCceEECCCcCcCCcEEEEEcCCCceEEEEcccceEEEcCC
Confidence 89999999999998887765322210 000 0000 0 0111222221 245566666663 44321
Q ss_pred ---E-EEeecCC---CccccchhHHhhhCCeEEEccccEEEE
Q 039109 167 ---F-YLLSLEG---CDAVLGAQWLCTLGSILWDFDKMEMQF 201 (233)
Q Consensus 167 ---~-~Vl~l~~---~d~ILG~dwL~~~~~i~id~~~~~~~f 201 (233)
+ -+.+... -..|||..||+.+-.+ .|+.+++|-|
T Consensus 342 ~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvv-fD~~~~rIGf 382 (403)
T 3aup_A 342 GVTCLGVMNGGMQPRAEITLGARQLEENLVV-FDLARSRVGF 382 (403)
T ss_dssp -CEEECEEECCSCCSSSEEECHHHHTTSCEE-EETTTTEEEE
T ss_pred CeEEEEEEcCCCCCCCcEEEChHHhcCeEEE-EECCCCEEEE
Confidence 1 1222221 2469999999999884 9999999988
No 37
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=91.94 E-value=0.24 Score=42.17 Aligned_cols=95 Identities=12% Similarity=0.169 Sum_probs=61.6
Q ss_pred eEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCc-eeccCC--ceeceeEeecceeEEEE-----------EE
Q 039109 103 SLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE-KLTSPG--RCKGVQLQLQGTQIEAY-----------FY 168 (233)
Q Consensus 103 ~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~-~~~~~~--~~~~~~~~i~g~~~~~~-----------~~ 168 (233)
...++||||++..++....++.+.-...... ..+|. .+.|.. ..+.+.+.++|..+.+. +.
T Consensus 211 ~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~-----~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~g~C~ 285 (329)
T 1htr_B 211 GCQAIVDTGTSLLTVPQQYMSALLQATGAQE-----DEYGQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYILSNNGYCT 285 (329)
T ss_dssp CEEEEECTTCCSEEEEGGGHHHHHHHHTCEE-----CTTSCEEECGGGGGGSCCEEEEETTEEEEECHHHHEEECSSCEE
T ss_pred CceEEEecCCccEECCHHHHHHHHHHhCCee-----cCCCeEEEeCCCcccCCcEEEEECCEEEEECHHHhcccCCCEEE
Confidence 4679999999999999888876643221110 12232 233432 34567888888766532 11
Q ss_pred --EeecC-----CC-ccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 169 --LLSLE-----GC-DAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 169 --Vl~l~-----~~-d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+.+.. +. ..|||..||+.+-. ..|+.++++-|..
T Consensus 286 ~~~~~~~~~~~~~~~~~iLG~~fl~~~yv-vfD~~~~~igfa~ 327 (329)
T 1htr_B 286 VGVEPTYLSSQNGQPLWILGDVFLRSYYS-VYDLGNNRVGFAT 327 (329)
T ss_dssp ESEEEECCCCTTSSCEEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred EEEEECCCCCCCCCceEEEChHHhccEEE-EEECCCCEEEEEe
Confidence 22321 22 58999999999987 4999999998864
No 38
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=91.64 E-value=1 Score=31.29 Aligned_cols=84 Identities=23% Similarity=0.319 Sum_probs=59.3
Q ss_pred EEEeeCCeeEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCceeccCCceeceeEeecceeEEEEEEEeecCC
Q 039109 95 LQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIEAYFYLLSLEG 174 (233)
Q Consensus 95 v~~~i~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~~~~~~~~~~~~~~~i~g~~~~~~~~Vl~l~~ 174 (233)
+.+.|.|..+...-||||+.++|-+.|... -.+-....+++..|..... .-=++++++|+...+.+.--|+.
T Consensus 10 L~vEiKg~kLkg~WDsGA~ITCiP~~fL~~----E~PI~~~~I~TIHG~k~q~---vYYl~fKv~GRKveaEVi~sp~d- 81 (107)
T 2jys_A 10 LEAEIKGTKLKAHWDSGATITCVPEAFLED----ERPIQTMLIKTIHGEKQQD---VYYLTFKVQGRKVEAEVLASPYD- 81 (107)
T ss_dssp EEEEETTEEEEEEECTTCSSEEEEGGGTTT----CCCSEEEEEECSSCEEEEE---EEEEEEEESSCEEEEEEEEESSS-
T ss_pred eeEEEeCcEEEEEecCCCeEEEcchHHhcc----cccccceEEEEecCceece---EEEEEEEEcCeEEEEEEecCccc-
Confidence 678899999999999999999999888642 1244566777788876443 22368999999877666554432
Q ss_pred Ccccc----chhHHhhhC
Q 039109 175 CDAVL----GAQWLCTLG 188 (233)
Q Consensus 175 ~d~IL----G~dwL~~~~ 188 (233)
-|| -.+|+....
T Consensus 82 --Yvli~P~DiPW~~~~p 97 (107)
T 2jys_A 82 --YILLNPSDVPWLMKKP 97 (107)
T ss_dssp --SEEECTTTCHHHHSCC
T ss_pred --EEEEcCcCccccccCc
Confidence 221 358988753
No 39
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=91.54 E-value=1.3 Score=37.53 Aligned_cols=95 Identities=19% Similarity=0.282 Sum_probs=57.1
Q ss_pred EEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCC---ceeccCCceeceeEeec-ceeEEEEE--EEee------
Q 039109 104 LTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANG---EKLTSPGRCKGVQLQLQ-GTQIEAYF--YLLS------ 171 (233)
Q Consensus 104 ~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G---~~~~~~~~~~~~~~~i~-g~~~~~~~--~Vl~------ 171 (233)
..++||||++..++...+++.+.-...... .....| -...|.. .+.+.+.++ |..+.+.. ++++
T Consensus 213 ~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~---~~~~~~~~~~~~~C~~-~p~i~f~f~~g~~~~vp~~~~~~~~~~~~g 288 (342)
T 3pvk_A 213 VDVLLDSGTTITYLQQDLADQIIKAFNGKL---TQDSNGNSFYEVDCNL-SGDVVFNFSKNAKISVPASEFAASLQGDDG 288 (342)
T ss_dssp EEEEECTTCSSEEECHHHHHHHHHHTTCEE---EECTTSCEEEEECSCC-CSEEEEEESTTCEEEEEGGGGEEC------
T ss_pred ceEEEeCCCCCeecCHHHHHHHHHHcCCee---cccCCCceEEEEecCC-CCceEEEECCCCEEEEcHHHheeeccccCC
Confidence 679999999999999998887643332110 001112 1223332 245566665 44333220 1111
Q ss_pred ---------c-CCCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 172 ---------L-EGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 172 ---------l-~~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+ ..-..|||..||+.+-. ..|+.++++.|..
T Consensus 289 ~~~~~C~~~i~~~~~~ilG~~fl~~~y~-vfD~~~~~igfA~ 329 (342)
T 3pvk_A 289 QPYDKCQLLFDVNDANILGDNFLRSAYI-VYDLDDNEISLAQ 329 (342)
T ss_dssp ----CEEESEEECTTCEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred CcCCeeEEEEeeCCCeEeCHHHHhcEEE-EEECCCCEEEEEe
Confidence 1 01246999999999987 4999999999975
No 40
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=91.21 E-value=0.56 Score=40.76 Aligned_cols=95 Identities=11% Similarity=0.131 Sum_probs=62.0
Q ss_pred eEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCc-eeccCC--ceeceeEeecceeEEEEE-----------E
Q 039109 103 SLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGE-KLTSPG--RCKGVQLQLQGTQIEAYF-----------Y 168 (233)
Q Consensus 103 ~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~-~~~~~~--~~~~~~~~i~g~~~~~~~-----------~ 168 (233)
...++||||++..++....+..+.-...... ..+|. .+.|.. ..+.+.+.++|..+.+.. .
T Consensus 253 ~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~-----~~~g~~~v~C~~~~~lP~i~f~~~g~~~~l~~~~yi~~~~~~C~ 327 (370)
T 3psg_A 253 GCQAIVDTGTSLLTGPTSAIANIQSDIGASE-----NSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDDSCT 327 (370)
T ss_dssp CEEEEECTTCCSEEEEHHHHHHHHHHTTCEE-----CTTCCEECCGGGGGGCCCEEEEETTEEEEECHHHHEEECSSCEE
T ss_pred CceEEEcCCCCcEECCHHHHHHHHHHhCCcc-----cCCCcEEEECCCcccCCcEEEEECCEEEEECHHHhcccCCCEEE
Confidence 4579999999999999888877643321110 12332 233432 345678888887766431 1
Q ss_pred --EeecC-----CCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 169 --LLSLE-----GCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 169 --Vl~l~-----~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+.+.. +.-.|||..||+.+-.+ .|+.++++-|..
T Consensus 328 ~~~~~~~~~~~~~~~~ILG~~Fl~~~y~v-fD~~~~riGfA~ 368 (370)
T 3psg_A 328 SGFEGMDVPTSSGELWILGDVFIRQYYTV-FDRANNKVGLAP 368 (370)
T ss_dssp ESEEEECCCTTSCCEEEECHHHHTTEEEE-EETTTTEEEEEE
T ss_pred EEEEeCCCCCCCCCcEEeChHHhcceEEE-EECCCCEEEEEE
Confidence 11211 11379999999999874 999999998864
No 41
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=90.88 E-value=0.3 Score=41.73 Aligned_cols=96 Identities=16% Similarity=0.279 Sum_probs=57.1
Q ss_pred EEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCC-c-eeccCCceeceeEee-cceeEEEEE--EEee-------
Q 039109 104 LTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANG-E-KLTSPGRCKGVQLQL-QGTQIEAYF--YLLS------- 171 (233)
Q Consensus 104 ~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G-~-~~~~~~~~~~~~~~i-~g~~~~~~~--~Vl~------- 171 (233)
..++||||++..++....++.+.-....... .....+ . .+.|.. .+.+.+.+ +|..+.+.. ++++
T Consensus 213 ~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~--~~~~~~~~~~~~C~~-~p~i~f~f~~g~~~~i~~~~~~~~~~~~~~~ 289 (342)
T 2qzx_A 213 TNVLLDSGTTISYFTRSIVRNILYAIGAQMK--FDSAGNKVYVADCKT-SGTIDFQFGNNLKISVPVSEFLFQTYYTSGK 289 (342)
T ss_dssp EEEEECTTCSSEEECHHHHHHHHHHHTCEEE--ECTTSCEEEEECTTC-CCEEEEEETTTEEEEEEGGGGEECCBCTTSC
T ss_pred cCEEEeCCCCCEEcCHHHHHHHHHHhCCeee--eccCCCcEEEEECCC-CCcEEEEECCCcEEEEcHHHhcccccccCCC
Confidence 4689999999999999888766322211100 000011 1 123322 45566666 455554320 1111
Q ss_pred --------c-CCCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 172 --------L-EGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 172 --------l-~~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
+ ..-..|||..||+.+-. ..|+.++++.|..
T Consensus 290 ~~~~C~~~i~~~~~~iLG~~fl~~~y~-vfD~~~~~igfA~ 329 (342)
T 2qzx_A 290 PFPKCEVRIRESEDNILGDNFLRSAYV-VYNLDDKKISMAP 329 (342)
T ss_dssp BCSSEEESEEECSSCEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred CCCccEEEEecCCCcEeChHhhhcEEE-EEECCCCEEEEEe
Confidence 0 01257999999999987 4999999999975
No 42
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=87.31 E-value=1.2 Score=37.69 Aligned_cols=91 Identities=15% Similarity=0.216 Sum_probs=53.8
Q ss_pred eEEEEEeeCCeeEEEEEcCCCccccccHHHHHHh---CCcc-C--------CCceeEEEEcCCceeccCCceeceeEeec
Q 039109 92 TMRLQSSISKASLTILIDSGSTHNFLHHKFAKIT---GLKS-E--------PGCLLSVVVANGEKLTSPGRCKGVQLQLQ 159 (233)
Q Consensus 92 t~~v~~~i~~~~~~~LiDSGAt~nfIs~~~a~~l---~l~~-~--------~~~~~~v~~a~G~~~~~~~~~~~~~~~i~ 159 (233)
...+...|+.+++.+++||||+..++...-+... +.+. . ...++.+..++|... .|..-.=.+.++
T Consensus 16 ~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs~~--~G~~~~D~v~ig 93 (323)
T 1bxo_A 16 EYITPVTIGGTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELSGYTWSISYGDGSSA--SGNVFTDSVTVG 93 (323)
T ss_dssp CEEEEEEETTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHCEEEEEEEEEEECTTSCEE--EEEEEEEEEEET
T ss_pred EEEEEEEECCEEEEEEEeCCCcceEEecCCCCchhccCCCCCCcccCCcccCCCeEEEEeCCCCeE--EEEEEEEEEEEC
Confidence 4567788889999999999999988754322111 1110 0 123456666777532 233333356777
Q ss_pred ceeEE-EEEEEeec--------CCCccccchhHH
Q 039109 160 GTQIE-AYFYLLSL--------EGCDAVLGAQWL 184 (233)
Q Consensus 160 g~~~~-~~~~Vl~l--------~~~d~ILG~dwL 184 (233)
+.... ..|-+... ...|.|||+.+-
T Consensus 94 ~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~ 127 (323)
T 1bxo_A 94 GVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFS 127 (323)
T ss_dssp TEEEEEEEEEEEEEECHHHHTCTTCSEEEECSCG
T ss_pred CEEECcEEEEEEEecCcccccCCCCceEEEeCcc
Confidence 75543 33443331 357999998774
No 43
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=87.25 E-value=1.5 Score=37.10 Aligned_cols=91 Identities=15% Similarity=0.217 Sum_probs=53.3
Q ss_pred eEEEEEeeCCeeEEEEEcCCCccccccHHHHHHh---CCcc-C--------CCceeEEEEcCCceeccCCceeceeEeec
Q 039109 92 TMRLQSSISKASLTILIDSGSTHNFLHHKFAKIT---GLKS-E--------PGCLLSVVVANGEKLTSPGRCKGVQLQLQ 159 (233)
Q Consensus 92 t~~v~~~i~~~~~~~LiDSGAt~nfIs~~~a~~l---~l~~-~--------~~~~~~v~~a~G~~~~~~~~~~~~~~~i~ 159 (233)
...+...|+.+++.+++||||+..++...-+... +.+. . ...++.+..++|.... |..-.=.+.++
T Consensus 15 ~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs~~~--G~~~~D~v~ig 92 (325)
T 1ibq_A 15 EYLTPVTVGKSTLHLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSSATKLSGYSWDISYGDGSSAS--GDVYRDTVTVG 92 (325)
T ss_dssp CEEEEEEEBTEEEEEEEETTCCCEEEECTTSCHHHHTTSCCCBCCSSCEECTTCBEEEECSSSCEEE--EEEEEEEEEET
T ss_pred EEEEEEEECCEEEEEEEeCCCccceEeeCCCCccccCCCCCCCchhcCCccCCCEEEEEeCCCCEEE--EEEEEeEEEEC
Confidence 4566777889999999999999988754322111 1110 1 1235566666665322 33333356677
Q ss_pred ceeEE-EEEEEeec--------CCCccccchhHH
Q 039109 160 GTQIE-AYFYLLSL--------EGCDAVLGAQWL 184 (233)
Q Consensus 160 g~~~~-~~~~Vl~l--------~~~d~ILG~dwL 184 (233)
+.... ..|-+... ...|.|||+.+-
T Consensus 93 ~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~ 126 (325)
T 1ibq_A 93 GVTTNKQAVEAASKISSEFVQDTANDGLLGLAFS 126 (325)
T ss_dssp TEEEEEEEEEEEEEECHHHHTSTTCCEEEECSCG
T ss_pred CEEEcceEEEEEEecCccccccCCCceEEEeCcc
Confidence 75544 33433331 367999998763
No 44
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=87.02 E-value=0.32 Score=43.47 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=24.9
Q ss_pred CccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 175 CDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 175 ~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
-..|||..||+.+-.+ .|+.+++|-|..
T Consensus 391 ~~~ILG~~fl~~~yvv-fD~~~~rIGfA~ 418 (455)
T 3lpj_A 391 TGTVMGAVIMEGFYVV-FDRARKRIGFAV 418 (455)
T ss_dssp SCEEECHHHHTTEEEE-EETTTTEEEEEE
T ss_pred CcEEEChHHhCCeEEE-EECCCCEEEEEe
Confidence 4579999999999884 999999999975
No 45
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=86.65 E-value=0.59 Score=41.91 Aligned_cols=89 Identities=11% Similarity=0.170 Sum_probs=55.1
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHHHHH-----HhC-CccC-------CCceeEEEEcCCceeccCCceeceeE
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHKFAK-----ITG-LKSE-------PGCLLSVVVANGEKLTSPGRCKGVQL 156 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~a~-----~l~-l~~~-------~~~~~~v~~a~G~~~~~~~~~~~~~~ 156 (233)
...+...|+ .+++.+++||||+..++...-+. ..+ .... ...++.+..++|. ..|..-.=.+
T Consensus 138 ~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~~~ydps~SsT~~~~~~~f~i~YgdGs---~~G~~~~Dtv 214 (451)
T 3qvc_A 138 LSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKDDTPVKLTSKAGT---ISGIFSKDLV 214 (451)
T ss_dssp EEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEECSSEE---EEEEEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCCCCCCCCCCcccccCCCEEEEEECCCE---EEEEEEEEEE
Confidence 367777888 78999999999999888653221 111 0000 1134566667665 2344434467
Q ss_pred eecceeEEEEEEEeec----------CCCccccchhH
Q 039109 157 QLQGTQIEAYFYLLSL----------EGCDAVLGAQW 183 (233)
Q Consensus 157 ~i~g~~~~~~~~Vl~l----------~~~d~ILG~dw 183 (233)
.+++......|-+... ...|.|||+.+
T Consensus 215 ~igg~~v~~~Fg~a~~t~~~~~~f~~~~~dGILGLg~ 251 (451)
T 3qvc_A 215 TIGKLSVPYKFIEMTEIVGFEPFYSESDVDGVFGLGW 251 (451)
T ss_dssp EETTEEEEEEEEEEEEEEECTTHHHHSCCCEEEECSS
T ss_pred EECCEEEEEEEEEEEeccccCCCccCCCCCEEEecCC
Confidence 7788766655555433 34799999975
No 46
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=86.37 E-value=1.6 Score=39.14 Aligned_cols=90 Identities=16% Similarity=0.259 Sum_probs=55.4
Q ss_pred CeEEEEEeeC--CeeEEEEEcCCCccccccHHHHHHhCCc------cCC-------CceeEEEEcCCceeccCCceecee
Q 039109 91 QTMRLQSSIS--KASLTILIDSGSTHNFLHHKFAKITGLK------SEP-------GCLLSVVVANGEKLTSPGRCKGVQ 155 (233)
Q Consensus 91 ~t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~a~~l~l~------~~~-------~~~~~v~~a~G~~~~~~~~~~~~~ 155 (233)
....+...|+ .+++.+++||||+..++...-+....+. ... ..++.+..++|. . .|..-.=.
T Consensus 138 ~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~~~ydps~SsT~~~~~~~~~i~YgdGs-~--~G~~~~Dt 214 (453)
T 2bju_A 138 IMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGT-V--SGFFSKDL 214 (453)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEEEEEEEEECSSSE-E--EEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCCCcCCCccCCceeECCcEEEEEcCCCC-e--EEEEEEEE
Confidence 3566777787 8999999999999998754322111111 000 124667777776 2 34444446
Q ss_pred EeecceeEEEEEEEeec----------CCCccccchhH
Q 039109 156 LQLQGTQIEAYFYLLSL----------EGCDAVLGAQW 183 (233)
Q Consensus 156 ~~i~g~~~~~~~~Vl~l----------~~~d~ILG~dw 183 (233)
+.+++......|-+... ...|.|||+.+
T Consensus 215 v~ig~~~v~~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~ 252 (453)
T 2bju_A 215 VTVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGW 252 (453)
T ss_dssp EEETTEEEEEEEEEEEECGGGTTHHHHSSCCEEEECSC
T ss_pred EEEeCcEEEEEEEEEEEecccCccccccCCceeEeccC
Confidence 77787665544544432 24799999876
No 47
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=85.71 E-value=1.5 Score=37.14 Aligned_cols=91 Identities=16% Similarity=0.256 Sum_probs=53.1
Q ss_pred eEEEEEeeCCeeEEEEEcCCCccccccHHHHHHh---CCcc-CC--------CceeEEEEcCCceeccCCceeceeEeec
Q 039109 92 TMRLQSSISKASLTILIDSGSTHNFLHHKFAKIT---GLKS-EP--------GCLLSVVVANGEKLTSPGRCKGVQLQLQ 159 (233)
Q Consensus 92 t~~v~~~i~~~~~~~LiDSGAt~nfIs~~~a~~l---~l~~-~~--------~~~~~v~~a~G~~~~~~~~~~~~~~~i~ 159 (233)
...+...|+.+++.+++||||+..++...-+... +.+. .+ ..++.+..++|... .|..-.=.+.++
T Consensus 16 ~Y~~~i~iG~q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs~~--~G~~~~D~v~ig 93 (323)
T 1izd_A 16 EYITQVTVGDDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSAQKIDGATWSISYGDGSSA--SGDVYKDKVTVG 93 (323)
T ss_dssp CEEEEEEETTEEEEEEEETTCCCEEECBTTSCHHHHTTCCCBCCCTTCEEEEEEEEEEECTTSCEE--EEEEEEEEEEET
T ss_pred EEEEEEEECCEEEEEEEcCCCcceEEecCCCCcccccCCCCCCccccCCccCCCeEEEEcCCCCeE--EEEEEEEEEEEC
Confidence 4567778889999999999999988754322111 1111 11 12345555666532 233333356777
Q ss_pred ceeEE-EEEEEeec--------CCCccccchhHH
Q 039109 160 GTQIE-AYFYLLSL--------EGCDAVLGAQWL 184 (233)
Q Consensus 160 g~~~~-~~~~Vl~l--------~~~d~ILG~dwL 184 (233)
+.... ..|-+... ...|.|||+.+-
T Consensus 94 ~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~ 127 (323)
T 1izd_A 94 GVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFS 127 (323)
T ss_dssp TEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCG
T ss_pred CEEECceEEEEEEeccccccccCCCceEEecCcc
Confidence 76544 34444432 357999998774
No 48
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=84.98 E-value=1.2 Score=38.75 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=24.0
Q ss_pred ccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 176 DAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 176 d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
-.|||..||+.+-. ..|..+++|-|..
T Consensus 345 ~~ILGd~fl~~~yv-vfD~~~~riGfA~ 371 (381)
T 1t6e_X 345 AVILGGAQMEDFVL-DFDMEKKRLGFSR 371 (381)
T ss_dssp SEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred eEEEChHHhCCcEE-EEECCCCEEEEec
Confidence 37999999999987 4999999999975
No 49
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=84.97 E-value=0.56 Score=40.66 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=24.9
Q ss_pred CccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 175 CDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 175 ~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
-..|||..||+.+-.+ .|+.+++|-|..
T Consensus 326 ~~~ILG~~fl~~~yvv-fD~~~~rIGfA~ 353 (383)
T 2ewy_A 326 NALVIGATVMEGFYVI-FDRAQKRVGFAA 353 (383)
T ss_dssp SCEEECHHHHTTEEEE-EETTTTEEEEEE
T ss_pred CcEEEChHHhCCeeEE-EECCCCeEEEEe
Confidence 3579999999999874 999999999985
No 50
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=84.95 E-value=1.7 Score=36.90 Aligned_cols=88 Identities=20% Similarity=0.294 Sum_probs=53.0
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHHHHHHhCCccC---CCceeEEEEcCCceeccCCceeceeEeecceeEE-E
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHKFAKITGLKSE---PGCLLSVVVANGEKLTSPGRCKGVQLQLQGTQIE-A 165 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~---~~~~~~v~~a~G~~~~~~~~~~~~~~~i~g~~~~-~ 165 (233)
...+...|+ .+++.+++||||+..++... ....-... ...++.+..++|. . .|..-.=.+.+++.... .
T Consensus 13 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~--~~y~~s~Ss~~~~~~~~i~Yg~Gs-~--~G~~~~Dtv~~g~~~v~~~ 87 (340)
T 1wkr_A 13 DYVVNVGVGSPATTYSLLVDTGSSNTWLGAD--KSYVKTSTSSATSDKVSVTYGSGS-F--SGTEYTDTVTLGSLTIPKQ 87 (340)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCCEECSS--SCCCCCTTCEEEEEEEEEECSSCE-E--EEEEEEEEEEETTEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCChhheecCC--CccCCcCCccccCceEEEEECCcE-E--EEEEEEEEEEECCEEEcce
Confidence 466777887 88999999999999988532 11110000 1235667777775 2 24444446677775433 3
Q ss_pred EEEEee----cCCCccccchhHH
Q 039109 166 YFYLLS----LEGCDAVLGAQWL 184 (233)
Q Consensus 166 ~~~Vl~----l~~~d~ILG~dwL 184 (233)
.|-+.. ....|.|||+.+-
T Consensus 88 ~fg~~~~~~~~~~~~GilGLg~~ 110 (340)
T 1wkr_A 88 SIGVASRDSGFDGVDGILGVGPV 110 (340)
T ss_dssp EEEEEEEEESCTTCSEEEECSCG
T ss_pred EEEEEEccCCCcCCCcEEECCcc
Confidence 333332 2358999998763
No 51
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=84.76 E-value=3.6 Score=35.80 Aligned_cols=90 Identities=14% Similarity=0.262 Sum_probs=54.6
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHHHH-------HHhC-CccCC-------CceeEEEEcCCceeccCCceece
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHKFA-------KITG-LKSEP-------GCLLSVVVANGEKLTSPGRCKGV 154 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~a-------~~l~-l~~~~-------~~~~~v~~a~G~~~~~~~~~~~~ 154 (233)
.......|+ .+++.+++||||+..++...-+ ...+ ..... ..++.+..++|. + .|..-.=
T Consensus 62 ~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~D 138 (383)
T 2x0b_A 62 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT-V--SGFLSQD 138 (383)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE-E--EEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCCCCCCCCCCCcEEECCcEEEEEcCCcc-E--EEEEEee
Confidence 456667777 6899999999999988754322 1111 11110 124667777775 2 3444444
Q ss_pred eEeecceeEEEEEEEeec--------CCCccccchhHH
Q 039109 155 QLQLQGTQIEAYFYLLSL--------EGCDAVLGAQWL 184 (233)
Q Consensus 155 ~~~i~g~~~~~~~~Vl~l--------~~~d~ILG~dwL 184 (233)
.+.+++......|-+... ..+|.|||+.|-
T Consensus 139 tv~ig~~~v~~~Fg~a~~~~g~~f~~~~~dGIlGLg~~ 176 (383)
T 2x0b_A 139 IITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGFI 176 (383)
T ss_dssp EEEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSCG
T ss_pred EEEEcCceEEEEEEEEEecCCcccccCCCceEeccCCC
Confidence 677787665544444432 257999998763
No 52
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=83.79 E-value=2 Score=36.40 Aligned_cols=88 Identities=15% Similarity=0.059 Sum_probs=50.2
Q ss_pred EEEEEeeCCeeEEEEEcCCCccccccHHHHHHhCC-----c-cCCC--------ceeEEEEcCCceeccCCceeceeEee
Q 039109 93 MRLQSSISKASLTILIDSGSTHNFLHHKFAKITGL-----K-SEPG--------CLLSVVVANGEKLTSPGRCKGVQLQL 158 (233)
Q Consensus 93 ~~v~~~i~~~~~~~LiDSGAt~nfIs~~~a~~l~l-----~-~~~~--------~~~~v~~a~G~~~~~~~~~~~~~~~i 158 (233)
..+...|+.+++.+++||||+..++...-+....+ + -.+. .++.+..++|.. .|..-.=.+.+
T Consensus 19 Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~ST~~~~~~~~~i~Yg~Gs~---~G~~~~Dtv~i 95 (330)
T 1yg9_A 19 YAGITKIGNQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISDGNVQVKFFDTGSA---VGRGIEDSLTI 95 (330)
T ss_dssp SEEEEEETTEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSCEEEEEEEEEEEETTTEEE---EEEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCCceEECCCEEEEEECCceE---EEEEEEEEEEE
Confidence 45567788999999999999998876432221111 0 0111 124444455532 33333345677
Q ss_pred cceeEE-EEEEEeec-------CCCccccchhH
Q 039109 159 QGTQIE-AYFYLLSL-------EGCDAVLGAQW 183 (233)
Q Consensus 159 ~g~~~~-~~~~Vl~l-------~~~d~ILG~dw 183 (233)
++.... ..|-+... ...|.|||+.+
T Consensus 96 g~~~~~~~~fg~~~~~~~~f~~~~~~GilGLg~ 128 (330)
T 1yg9_A 96 SQLTTSQQDIVLADELSQEVCILSADVVVGIAA 128 (330)
T ss_dssp TTEEEEEEEEEEEEEECTHHHHTTCSEEEECSC
T ss_pred CCEEEcCeEEEEEEEcccccccccCceEEEcCc
Confidence 776544 34443332 24799999876
No 53
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=82.87 E-value=0.45 Score=41.61 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=24.8
Q ss_pred CccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 175 CDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 175 ~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
-..|||..||+.+-.+ .|+.+++|-|..
T Consensus 345 ~~~ILG~~fl~~~yvv-fD~~~~rIGfA~ 372 (402)
T 3vf3_A 345 TGTVMGAVIMEGFYVV-FDRARKRIGFAV 372 (402)
T ss_dssp SCEEECHHHHTTEEEE-EEGGGTEEEEEE
T ss_pred CcEEEChHHhCCeEEE-EECCCCEEEEEe
Confidence 4579999999999884 999999999975
No 54
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=82.36 E-value=3.6 Score=34.79 Aligned_cols=91 Identities=13% Similarity=0.166 Sum_probs=53.4
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHHHHHHh-----C-CccC--------CCceeEEEEcCCceeccCCceecee
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHKFAKIT-----G-LKSE--------PGCLLSVVVANGEKLTSPGRCKGVQ 155 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~a~~l-----~-l~~~--------~~~~~~v~~a~G~~~~~~~~~~~~~ 155 (233)
...+...|+ .+++.+++||||+..++...-+... + .... ...++.+..++|.... |..-.=.
T Consensus 16 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs~~~--G~~~~D~ 93 (329)
T 3c9x_A 16 EYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATGHAIYTPSKSSTSKKVSGASWSISYGDGSSSS--GDVYTDK 93 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCGGGCTTCEECTTCBEEEECTTSCEEE--EEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCCccccCCCCcCCcccCcCceEcCCCeEEEEeCCCCcEE--EEEEEEE
Confidence 455677787 8999999999999988754322111 1 1000 1235677777775332 3333335
Q ss_pred EeecceeEE-EEEEEeec--------CCCccccchhHH
Q 039109 156 LQLQGTQIE-AYFYLLSL--------EGCDAVLGAQWL 184 (233)
Q Consensus 156 ~~i~g~~~~-~~~~Vl~l--------~~~d~ILG~dwL 184 (233)
+.+++.... ..|-+... ...|.|||+.+-
T Consensus 94 v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~ 131 (329)
T 3c9x_A 94 VTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAFD 131 (329)
T ss_dssp EEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCG
T ss_pred EEECCEEEcceEEEEEEecCccccccCCCceeEEeCcc
Confidence 667775543 33433331 367999998774
No 55
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=82.05 E-value=2.4 Score=36.18 Aligned_cols=88 Identities=20% Similarity=0.344 Sum_probs=52.2
Q ss_pred EEEEEeeC--CeeEEEEEcCCCccccccHHHHH-----HhC-Ccc-------CCCceeEEEEcCCceeccCCceeceeEe
Q 039109 93 MRLQSSIS--KASLTILIDSGSTHNFLHHKFAK-----ITG-LKS-------EPGCLLSVVVANGEKLTSPGRCKGVQLQ 157 (233)
Q Consensus 93 ~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~a~-----~l~-l~~-------~~~~~~~v~~a~G~~~~~~~~~~~~~~~ 157 (233)
..+...|+ .+++.+++||||+..++...-+. ..+ ... ....++.+..++|. . .|..-.=.+.
T Consensus 25 Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~D~v~ 101 (351)
T 1tzs_A 25 YFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQPGQSFSIQYGTGS-L--SGIIGADQVS 101 (351)
T ss_dssp CCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCBCCSCEEEEESSSCE-E--EEEEEEEEEE
T ss_pred EEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCCCCcCCcccCcceEECCCEEEEEeCCCC-e--EEEEEEeEEE
Confidence 45566676 68999999999999988543221 111 000 01235677777775 2 3444444677
Q ss_pred ecceeEE-EEEEEeec--------CCCccccchhH
Q 039109 158 LQGTQIE-AYFYLLSL--------EGCDAVLGAQW 183 (233)
Q Consensus 158 i~g~~~~-~~~~Vl~l--------~~~d~ILG~dw 183 (233)
+++.... ..|-+..- ..+|.|||+.+
T Consensus 102 ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 136 (351)
T 1tzs_A 102 VEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGY 136 (351)
T ss_dssp ETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred ECCeEECCeEEEEEEeccccccccCCCceEEecCC
Confidence 7776554 34444321 24789999865
No 56
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=81.63 E-value=5.8 Score=33.32 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=52.7
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHHH-----HHHhCC-ccCC-------CceeEEEEcCCceeccCCceeceeE
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHKF-----AKITGL-KSEP-------GCLLSVVVANGEKLTSPGRCKGVQL 156 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~-----a~~l~l-~~~~-------~~~~~v~~a~G~~~~~~~~~~~~~~ 156 (233)
...+...|+ .+++.+++||||+..++...- +...+. .... ..++.+..++|. . .|..-.=.+
T Consensus 15 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~D~v 91 (323)
T 3cms_A 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGS-M--QGILGYDTV 91 (323)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE-E--EEEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccCCCCCCCccCCCeEECCcEEEEEeCCCC-e--EEEEEEEEE
Confidence 456677777 689999999999998875322 221111 1100 124667777775 2 344444467
Q ss_pred eecceeEE-EEEEEeec--------CCCccccchhH
Q 039109 157 QLQGTQIE-AYFYLLSL--------EGCDAVLGAQW 183 (233)
Q Consensus 157 ~i~g~~~~-~~~~Vl~l--------~~~d~ILG~dw 183 (233)
.+++.... ..|-+... ...|.|||+.+
T Consensus 92 ~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 127 (323)
T 3cms_A 92 TVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAY 127 (323)
T ss_dssp EETTEEEEEEEEEEEEECCSHHHHHSSCSEEEECSC
T ss_pred EECCeEEeccEEEEEEecccccccccCCceEEecCc
Confidence 77776544 34444332 25799999865
No 57
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=80.59 E-value=1.3 Score=38.49 Aligned_cols=88 Identities=17% Similarity=0.306 Sum_probs=52.5
Q ss_pred EEEEEeeC--CeeEEEEEcCCCccccccHHHHH-----HhC-CccCC-------CceeEEEEcCCceeccCCceeceeEe
Q 039109 93 MRLQSSIS--KASLTILIDSGSTHNFLHHKFAK-----ITG-LKSEP-------GCLLSVVVANGEKLTSPGRCKGVQLQ 157 (233)
Q Consensus 93 ~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~a~-----~l~-l~~~~-------~~~~~v~~a~G~~~~~~~~~~~~~~~ 157 (233)
..+...|+ .+++.+++||||+..++...-+. ..+ ..... ..++.+..++|. . .|..-.=.+.
T Consensus 64 Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~Dtv~ 140 (375)
T 1miq_A 64 FYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGT-V--KGFFSKDLVT 140 (375)
T ss_dssp EECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEE-E--EEEEEEEEEE
T ss_pred EEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccCCCcCCCccCCceEECCcEEEEEeCCCe-E--EEEEEEEEEE
Confidence 44555666 78899999999999887543221 111 00000 124567777775 2 3444444677
Q ss_pred ecceeEEEEEEEeec----------CCCccccchhH
Q 039109 158 LQGTQIEAYFYLLSL----------EGCDAVLGAQW 183 (233)
Q Consensus 158 i~g~~~~~~~~Vl~l----------~~~d~ILG~dw 183 (233)
+++......|-+... ..+|.|||+.|
T Consensus 141 ig~~~v~~~Fg~~~~~~~~~~~f~~~~~dGilGLg~ 176 (375)
T 1miq_A 141 LGHLSMPYKFIEVTDTDDLEPIYSSVEFDGILGLGW 176 (375)
T ss_dssp ETTEEEEEEEEEEEECGGGTTHHHHSCCCEEEECSS
T ss_pred EcCceECcEEEEEEeccccccccccCCCceEEeCCC
Confidence 777665544444433 46899999876
No 58
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=79.65 E-value=3.7 Score=34.69 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=52.6
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHHHHHHhCC--cc-CC----------CceeEEEEcCCceeccCCceeceeE
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHKFAKITGL--KS-EP----------GCLLSVVVANGEKLTSPGRCKGVQL 156 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~a~~l~l--~~-~~----------~~~~~v~~a~G~~~~~~~~~~~~~~ 156 (233)
...+...|+ .+++.+++||||+..++...-+....+ +. .+ ...+.+..++|... .|..-.=.+
T Consensus 16 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs~~--~G~~~~D~v 93 (329)
T 1oew_A 16 AYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIYTPSKSTTAKLLSGATWSISYGDGSSS--SGDVYTDTV 93 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCGGGC-CCCBCGGGCTTCEEEEEEEEEEECTTSCEE--EEEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEECCCCCCeEEecCCCCccccccCccCCccCccceecCCCeEEEEeCCCCcE--EEEEEEEEE
Confidence 456677787 899999999999998875432221110 00 00 12355666666532 233333356
Q ss_pred eecceeEE-EEEEEeec--------CCCccccchhHH
Q 039109 157 QLQGTQIE-AYFYLLSL--------EGCDAVLGAQWL 184 (233)
Q Consensus 157 ~i~g~~~~-~~~~Vl~l--------~~~d~ILG~dwL 184 (233)
.+++.... ..|-+... ...|.|||+.+-
T Consensus 94 ~~g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~ 130 (329)
T 1oew_A 94 SVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFS 130 (329)
T ss_dssp EETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCG
T ss_pred EECCEEEeeeEEEEEEecCccccccCCCceEEEeccc
Confidence 67775543 33433331 367999998764
No 59
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=79.10 E-value=2 Score=37.78 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=23.1
Q ss_pred cccchhHHhhhCCeEEEccccEEEEEe
Q 039109 177 AVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 177 ~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
.|||..||+.+-. ..|..++++-|..
T Consensus 372 ~IlGd~fl~~~~v-vfD~~~~riGfa~ 397 (413)
T 3vla_A 372 IVIGGHQLEDNLV-QFDLATSRVGFSG 397 (413)
T ss_dssp EEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred eeEehhhhcCeEE-EEECCCCEEEEEE
Confidence 5999999999987 4999999999874
No 60
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=79.09 E-value=9.4 Score=32.10 Aligned_cols=89 Identities=16% Similarity=0.261 Sum_probs=53.5
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHHH-------HHHhCC-ccC-------CCceeEEEEcCCceeccCCceece
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHKF-------AKITGL-KSE-------PGCLLSVVVANGEKLTSPGRCKGV 154 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~-------a~~l~l-~~~-------~~~~~~v~~a~G~~~~~~~~~~~~ 154 (233)
...+...|+ .+++.+++||||+..++...- +...+. ... ....+.+..++|. . .|..-.=
T Consensus 19 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs-~--~G~~~~D 95 (341)
T 3k1w_A 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT-V--SGFLSQD 95 (341)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE-E--EEEEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCCCCCCCCcCcCeeECCCEEEEEECCcE-E--EEEEEEE
Confidence 456677777 589999999999998885321 111111 110 1234667777775 2 3444444
Q ss_pred eEeecceeEEEEEEEeec--------CCCccccchhH
Q 039109 155 QLQLQGTQIEAYFYLLSL--------EGCDAVLGAQW 183 (233)
Q Consensus 155 ~~~i~g~~~~~~~~Vl~l--------~~~d~ILG~dw 183 (233)
.+.+++......|-+... ..+|.|||+.+
T Consensus 96 ~v~ig~~~v~~~fg~~~~~~~~~~~~~~~~GilGLg~ 132 (341)
T 3k1w_A 96 IITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGF 132 (341)
T ss_dssp EEEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred EEEECCceeeEEEEEEEEccccccccCCcceEEECCc
Confidence 677787666444444432 23689999875
No 61
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=78.89 E-value=3.5 Score=35.63 Aligned_cols=89 Identities=18% Similarity=0.252 Sum_probs=53.5
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHHHHHHhCCc------cC-------CCceeEEEEcCCceeccCCceeceeE
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHKFAKITGLK------SE-------PGCLLSVVVANGEKLTSPGRCKGVQL 156 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~a~~l~l~------~~-------~~~~~~v~~a~G~~~~~~~~~~~~~~ 156 (233)
.......|+ .+++.+++||||+..++....+....+. .. ....+.+..++|. + .|..-.=.+
T Consensus 57 ~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~Dtv 133 (370)
T 3psg_A 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGS-M--TGILGYDTV 133 (370)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCE-E--EEEEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCCCCCCCccCcCcEECCcEEEEEeCCce-E--EEEEEEEEE
Confidence 356667777 5899999999999888864322211111 00 0134566677775 2 344444467
Q ss_pred eecceeEE-EEEEEeec--------CCCccccchhH
Q 039109 157 QLQGTQIE-AYFYLLSL--------EGCDAVLGAQW 183 (233)
Q Consensus 157 ~i~g~~~~-~~~~Vl~l--------~~~d~ILG~dw 183 (233)
.+++.... ..|-+... ..+|.|||+.+
T Consensus 134 ~ig~~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~ 169 (370)
T 3psg_A 134 QVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAY 169 (370)
T ss_dssp EETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred eeCCcccCCeEEEEEEeecccccccCCccceeccCC
Confidence 78886655 44544432 23799999975
No 62
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=78.60 E-value=1.2 Score=38.76 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=24.7
Q ss_pred CccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 175 CDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 175 ~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
...|||..||+.+-.+ .|+.+++|-|..
T Consensus 338 ~~~ILG~~fl~~~yvv-fD~~~~rIGfA~ 365 (395)
T 2qp8_A 338 TGTVMGAVIMEGFYVV-FDRARKRIGFAV 365 (395)
T ss_dssp SCEEECHHHHTTEEEE-EETTTTEEEEEE
T ss_pred CcEEEChHHhCCeeEE-EECCCCEEEEEe
Confidence 4589999999999874 999999999975
No 63
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=78.40 E-value=3.2 Score=35.52 Aligned_cols=90 Identities=19% Similarity=0.313 Sum_probs=53.2
Q ss_pred CeEEEEEeeC--CeeEEEEEcCCCccccccHHHHH-HhCCccC----C---------CceeEEEEcCCceeccCCceece
Q 039109 91 QTMRLQSSIS--KASLTILIDSGSTHNFLHHKFAK-ITGLKSE----P---------GCLLSVVVANGEKLTSPGRCKGV 154 (233)
Q Consensus 91 ~t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~a~-~l~l~~~----~---------~~~~~v~~a~G~~~~~~~~~~~~ 154 (233)
....+...|+ .+++.+++||||+..++...-+. ...+... + ...+.+..++|. . .|..-.=
T Consensus 18 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~D 94 (361)
T 1mpp_A 18 EEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGTGG-A--NGIYFRD 94 (361)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEEEEEEEECSSCE-E--EEEEEEE
T ss_pred CEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCCCCcCCCccCCceEecCCeEEEEECCce-E--EEEEEEE
Confidence 3566777888 89999999999999988544322 1111100 0 124566667765 2 3444444
Q ss_pred eEeecceeEE-EEEEEeec-------------CCCccccchhH
Q 039109 155 QLQLQGTQIE-AYFYLLSL-------------EGCDAVLGAQW 183 (233)
Q Consensus 155 ~~~i~g~~~~-~~~~Vl~l-------------~~~d~ILG~dw 183 (233)
.+.+++.... ..|-+... ...|.|||+.+
T Consensus 95 ~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg~ 137 (361)
T 1mpp_A 95 SITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAY 137 (361)
T ss_dssp EEEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSC
T ss_pred EEEECCEEEeceEEEEEEeccCccccccccccCCCCCEEEeCC
Confidence 5677775543 33433321 24799999865
No 64
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=77.90 E-value=3.3 Score=34.93 Aligned_cols=89 Identities=16% Similarity=0.275 Sum_probs=52.5
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHHH-----HHHhC-CccCC-------CceeEEEEcCCceeccCCceeceeE
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHKF-----AKITG-LKSEP-------GCLLSVVVANGEKLTSPGRCKGVQL 156 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~-----a~~l~-l~~~~-------~~~~~v~~a~G~~~~~~~~~~~~~~ 156 (233)
...+...|+ .+++.+++||||+..++...- +...+ ..... ..++.+..++|. . .|..-.=.+
T Consensus 14 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~D~v 90 (329)
T 1dpj_A 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTGS-L--EGYISQDTL 90 (329)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE-E--EEEEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCCcCcCCcccCcCeEECCcEEEEEECCce-E--EEEEEEEEE
Confidence 456677787 789999999999998875321 11111 11100 134667777772 2 344444466
Q ss_pred eecceeEE-EEEEEeec--------CCCccccchhH
Q 039109 157 QLQGTQIE-AYFYLLSL--------EGCDAVLGAQW 183 (233)
Q Consensus 157 ~i~g~~~~-~~~~Vl~l--------~~~d~ILG~dw 183 (233)
.+++.... ..|-+... ...|.|||+.+
T Consensus 91 ~ig~~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~ 126 (329)
T 1dpj_A 91 SIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGY 126 (329)
T ss_dssp EETTEEEEEEEEEEEEECCHHHHTTCSCSEEEECSC
T ss_pred EECCeEECCeEEEEEEecCccccccCCcceEEEeCC
Confidence 77776544 34443321 25799999876
No 65
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=76.96 E-value=8.2 Score=32.17 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=52.2
Q ss_pred EEEEEeeC--CeeEEEEEcCCCccccccHHH-----HHHhCCc-cCC-------CceeEEEEcCCceeccCCceeceeEe
Q 039109 93 MRLQSSIS--KASLTILIDSGSTHNFLHHKF-----AKITGLK-SEP-------GCLLSVVVANGEKLTSPGRCKGVQLQ 157 (233)
Q Consensus 93 ~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~-----a~~l~l~-~~~-------~~~~~v~~a~G~~~~~~~~~~~~~~~ 157 (233)
..+...|+ .+++.+++||||+..++...- +...+.- ... ...+.+..++|. . .|..-.=.+.
T Consensus 13 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs-~--~G~~~~D~v~ 89 (320)
T 4aa9_A 13 YFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLGKPLSIHYGTGS-M--EGFLGYDTVT 89 (320)
T ss_dssp CEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE-E--EEEEEEEEEE
T ss_pred EEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCCCCCCCCCCcCeEcCCcEEEEEECCcE-E--EEEEEEEEEE
Confidence 45566676 689999999999998885421 2211111 110 134667777775 2 3444444677
Q ss_pred ecceeEE-EEEEEeec--------CCCccccchhH
Q 039109 158 LQGTQIE-AYFYLLSL--------EGCDAVLGAQW 183 (233)
Q Consensus 158 i~g~~~~-~~~~Vl~l--------~~~d~ILG~dw 183 (233)
+++.... ..|-+... ...|.|||+.+
T Consensus 90 ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 124 (320)
T 4aa9_A 90 VSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAY 124 (320)
T ss_dssp ETTEEEEEEEEEEEEECCSHHHHSCCCSEEEECSC
T ss_pred ECCEeecCeEEEEEEEcccccccccCcccEEecCc
Confidence 7876554 34444432 23689999875
No 66
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=76.92 E-value=2.9 Score=28.98 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=22.9
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccH
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHH 119 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~ 119 (233)
...+...|+ .+++.+++||||+..+|..
T Consensus 14 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 43 (97)
T 1lya_A 14 QYYGEIGIGTPPQCFTVVFDTGSSNLWVPS 43 (97)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred eEEEEEEECCCCeEEEEEEeCCCCceEEeE
Confidence 456677787 7899999999999988754
No 67
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=75.08 E-value=9.4 Score=31.96 Aligned_cols=89 Identities=16% Similarity=0.193 Sum_probs=51.9
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHHH-----HHHhC-CccCC-------CceeEEEEcCCceeccCCceeceeE
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHKF-----AKITG-LKSEP-------GCLLSVVVANGEKLTSPGRCKGVQL 156 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~-----a~~l~-l~~~~-------~~~~~v~~a~G~~~~~~~~~~~~~~ 156 (233)
...+...|+ .+++.+++||||+..++...- +...+ ..... ...+.+..++|.. .|..-.=.+
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~---~G~~~~D~v 89 (324)
T 1am5_A 13 EYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVETGKTVDLTYGTGGM---RGILGQDTV 89 (324)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEE---EEEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccccCCCcCCCccCCCeEeCCcEEEEEECCCCe---EEEEEECce
Confidence 455667777 689999999999998875432 11111 11110 1245666677753 344434466
Q ss_pred eecceeEE-EEEEEeec--------CCCccccchhH
Q 039109 157 QLQGTQIE-AYFYLLSL--------EGCDAVLGAQW 183 (233)
Q Consensus 157 ~i~g~~~~-~~~~Vl~l--------~~~d~ILG~dw 183 (233)
.+++.... ..|-+... ...|.|||+.+
T Consensus 90 ~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 125 (324)
T 1am5_A 90 SVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAY 125 (324)
T ss_dssp ESSSSCEEEEEEEEEEECCSTTTTTCSSSEEEECSC
T ss_pred eECCcEEcccEEEEEEecccccccCCCCceEEecCC
Confidence 77776544 34444331 24799999876
No 68
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=73.56 E-value=9.7 Score=34.13 Aligned_cols=89 Identities=13% Similarity=0.236 Sum_probs=52.7
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHHHH------HHhC-Ccc-------CCCceeEEEEcCCceeccCCceecee
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHKFA------KITG-LKS-------EPGCLLSVVVANGEKLTSPGRCKGVQ 155 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~a------~~l~-l~~-------~~~~~~~v~~a~G~~~~~~~~~~~~~ 155 (233)
.......|+ .+++.+++||||+..++...-+ ...+ ... ....++.+..++|. . .|..-.=.
T Consensus 53 ~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~Dt 129 (478)
T 1qdm_A 53 QYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGS-I--AGYFSEDS 129 (478)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGGSCCBCGGGCTTCBCCCCEEEEEETTEE-E--EEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCccccCCCCCCcccCCCeeeCCcEEEEEcCCCC-e--EEEEEEEE
Confidence 456677787 7899999999999988843211 1111 000 01235677777775 2 34444446
Q ss_pred EeecceeEE-EEEEEeec--------CCCccccchhH
Q 039109 156 LQLQGTQIE-AYFYLLSL--------EGCDAVLGAQW 183 (233)
Q Consensus 156 ~~i~g~~~~-~~~~Vl~l--------~~~d~ILG~dw 183 (233)
+.+++.... ..|-+... ..+|.|||+.|
T Consensus 130 v~ig~~~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~ 166 (478)
T 1qdm_A 130 VTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGF 166 (478)
T ss_dssp EEETTEEEEEEEEEEEEECCBSHHHHCSSSEEEECSC
T ss_pred EEECCeEECCEEEEEEEecCCcccccccccceecccc
Confidence 777776543 33433321 24699999876
No 69
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=68.32 E-value=16 Score=32.75 Aligned_cols=53 Identities=15% Similarity=0.396 Sum_probs=36.8
Q ss_pred ceeceeEeecceeEEEE---------------EE--Eeec-----CCCccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 150 RCKGVQLQLQGTQIEAY---------------FY--LLSL-----EGCDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 150 ~~~~~~~~i~g~~~~~~---------------~~--Vl~l-----~~~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
..+.+.+.++|..|... +. +..+ .+...|||-.||+.+-. ..|+.+++|-|..
T Consensus 402 ~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~-vfD~~~~rIGfA~ 476 (478)
T 1qdm_A 402 SMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHT-VFDYGKLRIGFAK 476 (478)
T ss_dssp TCCCEEEEETTEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEE-EEETTTTEEEEEE
T ss_pred ccccEEEEECCEEEEEChHHhEEEccCCCCCeEEEEEEeccCCCCCCCcEEECHHHhccEEE-EEECCCCEEEEEe
Confidence 35678888888776642 11 1111 12347999999999987 4999999998864
No 70
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=67.98 E-value=9.1 Score=33.85 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=50.8
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHHHHHHhCCccC---------CCceeEEEEcCCceeccCCceeceeEeecc
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHKFAKITGLKSE---------PGCLLSVVVANGEKLTSPGRCKGVQLQLQG 160 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~---------~~~~~~v~~a~G~~~~~~~~~~~~~~~i~g 160 (233)
...+...|+ .+++.+++||||+..++...-+...+-.-. ....+.+..++|.. .|..-.=.+.+++
T Consensus 75 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~cc~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~---~G~~~~Dtv~ig~ 151 (455)
T 3lpj_A 75 GYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKW---EGELGTDLVSIPH 151 (455)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEE---EEEEEEEEEECTT
T ss_pred EEEEEEEECCCCeEEEEEEcCCCcceEEecccccccCCcccCCCCCCcccCCccEEEEeCCeEE---EEEEEEEEEEECC
Confidence 567788888 799999999999998885332111000000 12345667777763 3433333556652
Q ss_pred ---eeEEEEEEEee--------cCCCccccchhHH
Q 039109 161 ---TQIEAYFYLLS--------LEGCDAVLGAQWL 184 (233)
Q Consensus 161 ---~~~~~~~~Vl~--------l~~~d~ILG~dwL 184 (233)
..+...|.... ...+|.|||+.|-
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~ 186 (455)
T 3lpj_A 152 GPNVTVRANIAAITESDKFFINGSNWEGILGLAYA 186 (455)
T ss_dssp SCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCG
T ss_pred CcceeeEEEEEEEEccCcccccCCCcceEEEeCcc
Confidence 22222232221 1347999998863
No 71
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=64.33 E-value=13 Score=24.63 Aligned_cols=28 Identities=14% Similarity=0.387 Sum_probs=23.8
Q ss_pred CccccchhHHhhhCCeEEEccccEEEEEe
Q 039109 175 CDAVLGAQWLCTLGSILWDFDKMEMQFTK 203 (233)
Q Consensus 175 ~d~ILG~dwL~~~~~i~id~~~~~~~f~~ 203 (233)
...|||..||+.+-.+ .|+.+.++-|..
T Consensus 58 ~~~ILGd~Fl~~~y~v-fD~~~~riGfA~ 85 (87)
T 1b5f_B 58 PLWILGDVFMRPYHTV-FDYGNLLVGFAE 85 (87)
T ss_dssp BEEEECHHHHTTEEEE-EETTTTEEEEEE
T ss_pred CeEEechHHhccEEEE-EECCCCEEEEEE
Confidence 3579999999999874 999999998864
No 72
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=63.59 E-value=32 Score=23.43 Aligned_cols=65 Identities=9% Similarity=0.163 Sum_probs=44.1
Q ss_pred cccCCeEEEEEe-eCCeeEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcCCceeccCCceecee
Q 039109 87 VQSPQTMRLQSS-ISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVANGEKLTSPGRCKGVQ 155 (233)
Q Consensus 87 ~~~~~t~~v~~~-i~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~G~~~~~~~~~~~~~ 155 (233)
+..+..|.+.++ .+|+++.+-|..-.+..-+-..++++.+++. ..++... +|..+.-..-..++.
T Consensus 2 s~~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~---~~~rf~F-dG~~l~~~~Tp~dl~ 67 (94)
T 2io1_B 2 SHMNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM---RQIRFRF-DGQPINETDTPAQLE 67 (94)
T ss_dssp ----CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCG---GGEEEEE-TTEECCTTCCTTTTT
T ss_pred CCCCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCc---ccEEEEE-CCEEcCCCCCHHHcC
Confidence 445567777777 4778899999999999999999999999874 3444443 577765544333443
No 73
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=49.30 E-value=15 Score=29.31 Aligned_cols=89 Identities=15% Similarity=0.264 Sum_probs=50.3
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHHH------HHHhCC-ccCC-------CceeEEEEcCCceeccCCceecee
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHKF------AKITGL-KSEP-------GCLLSVVVANGEKLTSPGRCKGVQ 155 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~------a~~l~l-~~~~-------~~~~~v~~a~G~~~~~~~~~~~~~ 155 (233)
...+...|+ .+++.+++||||+..++...- +...+. .... ..++.+..++|. . .+..-.=.
T Consensus 14 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~--~G~~~~D~ 90 (239)
T 1b5f_A 14 SYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKENGTFGAIIYGTGS-I--TGFFSQDS 90 (239)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE-E--EEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCCCCCCCCccCCCeeeCCcEEEEEECCCc-E--EEEEEEEE
Confidence 456677787 789999999999998874221 211111 1100 124566667765 2 34443445
Q ss_pred EeecceeEE-EEEEEee--------cCCCccccchhH
Q 039109 156 LQLQGTQIE-AYFYLLS--------LEGCDAVLGAQW 183 (233)
Q Consensus 156 ~~i~g~~~~-~~~~Vl~--------l~~~d~ILG~dw 183 (233)
+.+++.... ..|-... ...+|.|||+.+
T Consensus 91 v~~g~~~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~ 127 (239)
T 1b5f_A 91 VTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLSF 127 (239)
T ss_dssp EEETTEEEEEEEEEEEEEECHHHHTTCSCCEEEECSC
T ss_pred EEECCcEEccEEEEEEEeccCccccccCcceEEecCc
Confidence 667765443 2232221 125799999865
No 74
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=47.85 E-value=15 Score=30.82 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=52.3
Q ss_pred CeEEEEEeeC--CeeEEEEEcCCCccccccHHHHHHh--CCcc-CC---------CceeEEEEcCCceeccCCceeceeE
Q 039109 91 QTMRLQSSIS--KASLTILIDSGSTHNFLHHKFAKIT--GLKS-EP---------GCLLSVVVANGEKLTSPGRCKGVQL 156 (233)
Q Consensus 91 ~t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~a~~l--~l~~-~~---------~~~~~v~~a~G~~~~~~~~~~~~~~ 156 (233)
....+...|+ ++++.+++||||+..++...-+... +.+. .+ ..++.+..++|.... |..-.=.+
T Consensus 15 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~~--G~~~~D~v 92 (325)
T 2apr_A 15 IEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTKYDPNQSSTYQADGRTWSISYGDGSSAS--GILAKDNV 92 (325)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSCCTTSCCBCGGGCTTCEEEEEEEEEECTTSCEEE--EEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCchHhcCCCCCCcccCCCeeeCCCEEEEEECCCCCEE--EEEEEEEE
Confidence 3456777888 8999999999999988764322111 0000 01 124566666665332 33333356
Q ss_pred eecceeEE-EEEEEeec-------CCCccccchhHH
Q 039109 157 QLQGTQIE-AYFYLLSL-------EGCDAVLGAQWL 184 (233)
Q Consensus 157 ~i~g~~~~-~~~~Vl~l-------~~~d~ILG~dwL 184 (233)
.+++.... ..|-+... ...|.|||+.+-
T Consensus 93 ~~g~~~v~~~~fg~~~~~~~~f~~~~~~GilGLg~~ 128 (325)
T 2apr_A 93 NLGGLLIKGQTIELAKREAASFASGPNDGLLGLGFD 128 (325)
T ss_dssp EETTEEEEEEEEEEEEEECHHHHTSSCSEEEECSCG
T ss_pred EECCEEECcEEEEEEeccCcccccCCCceEEEeCCc
Confidence 66765543 33333321 128999998764
No 75
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=45.98 E-value=39 Score=21.95 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=35.6
Q ss_pred ccccCCeEEEEEee-CCeeEEEEEcCCCccccccHHHHHHhCCcc
Q 039109 86 RVQSPQTMRLQSSI-SKASLTILIDSGSTHNFLHHKFAKITGLKS 129 (233)
Q Consensus 86 g~~~~~t~~v~~~i-~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~ 129 (233)
|...+.+|.+.++. +++.+.+=++.-+|..-+-..++++.+++.
T Consensus 1 ~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~ 45 (87)
T 1wh3_A 1 GSSGSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPK 45 (87)
T ss_dssp CCCCSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCT
T ss_pred CCCCCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCCh
Confidence 44566788888885 688888889988888889999999988764
No 76
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.71 E-value=36 Score=21.67 Aligned_cols=44 Identities=7% Similarity=0.098 Sum_probs=34.6
Q ss_pred cccCCeEEEEEe-eCCeeEEEEEcCCCccccccHHHHHHhCCccC
Q 039109 87 VQSPQTMRLQSS-ISKASLTILIDSGSTHNFLHHKFAKITGLKSE 130 (233)
Q Consensus 87 ~~~~~t~~v~~~-i~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~ 130 (233)
...+.+|.+.++ .+|+.+.+-++.-+|..-+-..++++.+++..
T Consensus 2 ~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~ 46 (81)
T 2dzi_A 2 SSGSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVR 46 (81)
T ss_dssp CCSSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTT
T ss_pred CCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 345667888777 46778888889889998899999999888753
No 77
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=42.88 E-value=19 Score=30.28 Aligned_cols=91 Identities=14% Similarity=0.291 Sum_probs=52.5
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHH---H-----------HHHhCC-ccCC-------CceeEEEEcCCceecc
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHK---F-----------AKITGL-KSEP-------GCLLSVVVANGEKLTS 147 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~---~-----------a~~l~l-~~~~-------~~~~~v~~a~G~~~~~ 147 (233)
...+...|+ .+++.+++||||+..++... + +...+. .... ...+.+..++|...
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~-- 90 (342)
T 2qzx_A 13 TYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNLNTRFDIKYGDGSYA-- 90 (342)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECTTSCEE--
T ss_pred EEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCcccCCCcEEEEeCCCCeE--
Confidence 456677787 89999999999999988422 1 111111 1100 12456666777533
Q ss_pred CCceeceeEeecceeEE-EEEEEee-cCCCccccchhHH
Q 039109 148 PGRCKGVQLQLQGTQIE-AYFYLLS-LEGCDAVLGAQWL 184 (233)
Q Consensus 148 ~~~~~~~~~~i~g~~~~-~~~~Vl~-l~~~d~ILG~dwL 184 (233)
.|..-.=.+.+++.... ..|-+.. ....|.|||+.+-
T Consensus 91 ~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~GilGLg~~ 129 (342)
T 2qzx_A 91 KGKLYKDTVGIGGVSVRDQLFANVWSTSARKGILGIGFQ 129 (342)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEECSCG
T ss_pred EEEEEEEEEEECCEEecceEEEEEEecCCCcCEEEEccc
Confidence 23333335667775543 3344333 3478999998763
No 78
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=42.35 E-value=20 Score=30.11 Aligned_cols=91 Identities=14% Similarity=0.212 Sum_probs=52.6
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHH---H-----------HHHhC-CccCC-------CceeEEEEcCCceecc
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHK---F-----------AKITG-LKSEP-------GCLLSVVVANGEKLTS 147 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~---~-----------a~~l~-l~~~~-------~~~~~v~~a~G~~~~~ 147 (233)
...+...|+ .+++.+++||||+..++... + +...+ ..... ..++.+..++|....
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~~- 91 (334)
T 1j71_A 13 SYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLNQDFSIEYGDLTSSQ- 91 (334)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEEEEEEEEBTTSCEEE-
T ss_pred EEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccCCCceEEEECCCCEEE-
Confidence 456677787 89999999999999988422 1 11111 10000 124566677775332
Q ss_pred CCceeceeEeecceeEE-EEEEEee-cCCCccccchhHH
Q 039109 148 PGRCKGVQLQLQGTQIE-AYFYLLS-LEGCDAVLGAQWL 184 (233)
Q Consensus 148 ~~~~~~~~~~i~g~~~~-~~~~Vl~-l~~~d~ILG~dwL 184 (233)
|..-.=.+.+++.... ..|-+.. ....|.|||+.+-
T Consensus 92 -G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~GilGLg~~ 129 (334)
T 1j71_A 92 -GSFYKDTVGFGGISIKNQQFADVTTTSVDQGIMGIGFT 129 (334)
T ss_dssp -EEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSCG
T ss_pred -EEEEEEEEEECCEEEccEEEEEEEecCCCccEEEEcCC
Confidence 3333335667775543 3343333 3478999998763
No 79
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=42.28 E-value=62 Score=21.86 Aligned_cols=45 Identities=7% Similarity=0.178 Sum_probs=37.2
Q ss_pred cccCCeEEEEEeeCCeeE-EEEEcCCCccccccHHHHHHhCCccCC
Q 039109 87 VQSPQTMRLQSSISKASL-TILIDSGSTHNFLHHKFAKITGLKSEP 131 (233)
Q Consensus 87 ~~~~~t~~v~~~i~~~~~-~~LiDSGAt~nfIs~~~a~~l~l~~~~ 131 (233)
.+...+|.+.++.+++.+ .+=+|..+|..-+-..++...|++...
T Consensus 2 ~~~~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~ 47 (96)
T 1wgg_A 2 SSGSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPAR 47 (96)
T ss_dssp CSCCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTT
T ss_pred CCCCcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHH
Confidence 345567889998889888 588999999999999999999988643
No 80
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=42.17 E-value=78 Score=21.45 Aligned_cols=55 Identities=7% Similarity=0.123 Sum_probs=42.6
Q ss_pred cCCeEEEEEeeCCeeEEEEEcCCCccccccHHHHHHhCCccCCCceeEEEEcC--Ccee
Q 039109 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEPGCLLSVVVAN--GEKL 145 (233)
Q Consensus 89 ~~~t~~v~~~i~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~~~~~~~v~~a~--G~~~ 145 (233)
+.+.+++++..+|.-..+-+++..+..-+..++..++++. ...++.++..| |..+
T Consensus 3 ~~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~--~~~~f~lky~DEeGD~i 59 (89)
T 1vd2_A 3 LGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFD--NEQLFTMKWIDEEGDPC 59 (89)
T ss_dssp CSSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCC--SSCCEEEEECCSSSCCE
T ss_pred CCCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCC--CCCeEEEEEECCCCCcc
Confidence 3567999999999988889999777766788888888865 45678888775 4443
No 81
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=40.99 E-value=21 Score=29.86 Aligned_cols=92 Identities=17% Similarity=0.294 Sum_probs=54.6
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHH---H-----HHHhCC-ccC-------CCceeEEEEcCCceeccCCceec
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHK---F-----AKITGL-KSE-------PGCLLSVVVANGEKLTSPGRCKG 153 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~---~-----a~~l~l-~~~-------~~~~~~v~~a~G~~~~~~~~~~~ 153 (233)
...+...|+ .+++.+++||||+..++... + +...+. ... ....+.+..++|... .|..-.
T Consensus 13 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~--~G~~~~ 90 (339)
T 3fv3_A 13 SYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAAFTIRYGDGSTS--QGTWGK 90 (339)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTTTCCBCGGGCTTCEEEEEEEEEECTTSCEE--EEEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCCCCcCCCccCcceeeCCceEEEEECCCceE--EEEEEE
Confidence 466677787 78999999999999988532 1 111111 000 023456667777433 233334
Q ss_pred eeEeecceeEE-EEEEEee-cCCCccccchhHHh
Q 039109 154 VQLQLQGTQIE-AYFYLLS-LEGCDAVLGAQWLC 185 (233)
Q Consensus 154 ~~~~i~g~~~~-~~~~Vl~-l~~~d~ILG~dwL~ 185 (233)
=.+.+++.... ..|-+.. ..+.|.|||+.+-.
T Consensus 91 D~v~~g~~~v~~~~fg~~~~~~~~~GilGLg~~~ 124 (339)
T 3fv3_A 91 DTVTINGVSITGQQIADVTQTSVDQGILGIGYTS 124 (339)
T ss_dssp EEEEETTEEEEEEEEEEEEEESSSSCEEECSCGG
T ss_pred EEEEECCEEECceEEEEEEecCCCceeEEecCcc
Confidence 46777776654 4444443 35689999987643
No 82
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=40.09 E-value=24 Score=30.37 Aligned_cols=90 Identities=14% Similarity=0.198 Sum_probs=50.2
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHHHHHHhC--CccC-------CCceeEEEEcCCceeccCCceeceeEeec-
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHKFAKITG--LKSE-------PGCLLSVVVANGEKLTSPGRCKGVQLQLQ- 159 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~a~~l~--l~~~-------~~~~~~v~~a~G~~~~~~~~~~~~~~~i~- 159 (233)
...+...|+ .+++.+++||||+..++...-+...+ .... ...++.+..++|.. .|..-.=.+.++
T Consensus 22 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~---~G~~~~Dtv~ig~ 98 (395)
T 2qp8_A 22 GYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKW---EGELGTDLVSIPH 98 (395)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEE---EEEEEEEEEECTT
T ss_pred eEEEEEEecCCCceEEEEEecCCCceEEECCCCccccCCcCcccCCCceeCCceEEEEECCcEE---EEEEEeEEEEECC
Confidence 466778888 89999999999999988543221110 0000 01346667777753 243333345665
Q ss_pred ce--eEEEEEEEee--------cCCCccccchhHH
Q 039109 160 GT--QIEAYFYLLS--------LEGCDAVLGAQWL 184 (233)
Q Consensus 160 g~--~~~~~~~Vl~--------l~~~d~ILG~dwL 184 (233)
+. .+...|.... ....|.|||+.+-
T Consensus 99 g~~~~~~~~~~~~~~~~~~f~~~~~~dGIlGLg~~ 133 (395)
T 2qp8_A 99 GPNVTVRANIAAITESDKFFINGSNWEGILGLAYA 133 (395)
T ss_dssp SCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCG
T ss_pred CCCceEEEEEEEEEccCcccccccCccceEEcCch
Confidence 32 2222222221 1347999998763
No 83
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=39.10 E-value=24 Score=28.12 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccccccHHHHHHhC
Q 039109 103 SLTILIDSGSTHNFLHHKFAKITG 126 (233)
Q Consensus 103 ~~~~LiDSGAt~nfIs~~~a~~l~ 126 (233)
...++||||++..++...+++.+.
T Consensus 210 ~~~aiiDTGTt~~~lP~~~~~~i~ 233 (239)
T 1b5f_A 210 GCQAFADSGTSLLSGPTAIVTQIN 233 (239)
T ss_dssp CEEEEECTTCSSEEECHHHHHHHH
T ss_pred CCEEEEecCcchhhCCHHHHHHHH
Confidence 357999999999999999887763
No 84
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=38.58 E-value=28 Score=30.04 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=23.6
Q ss_pred CeEEEEEeeC--CeeEEEEEcCCCccccccH
Q 039109 91 QTMRLQSSIS--KASLTILIDSGSTHNFLHH 119 (233)
Q Consensus 91 ~t~~v~~~i~--~~~~~~LiDSGAt~nfIs~ 119 (233)
....+...|+ .+++.+++||||+..++.-
T Consensus 21 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 51 (403)
T 3aup_A 21 GLHWANLQKRTPLMQVPVLVDLNGNHLWVNC 51 (403)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCSSEEEEC
T ss_pred ceEEEEEECCCCCceeEEEEECCCCceeECC
Confidence 4566777787 7899999999999988753
No 85
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=38.55 E-value=26 Score=29.89 Aligned_cols=89 Identities=18% Similarity=0.174 Sum_probs=49.1
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHHHHHHhCCc--cC-------CCceeEEEEcCCceeccCCceeceeEeecc
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHKFAKITGLK--SE-------PGCLLSVVVANGEKLTSPGRCKGVQLQLQG 160 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~a~~l~l~--~~-------~~~~~~v~~a~G~~~~~~~~~~~~~~~i~g 160 (233)
...+...|+ .+++.+++||||+..++...-+...+-. .. ...++.+..++|.. .|..-.=.+.+++
T Consensus 14 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~---~G~~~~Dtv~i~~ 90 (383)
T 2ewy_A 14 GYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYIDTYFDTERSSTYRSKGFDVTVKYTQGSW---TGFVGEDLVTIPK 90 (383)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEECSCBTTBSCCCCGGGCTTCEEEEEEEEEECSSCEE---EEEEEEEEEEETT
T ss_pred cEEEEEEecCCCceEEEEEecCCCceEEecCCCCccccCcccccCccceeCCceEEEEECCcEE---EEEEEEEEEEECC
Confidence 466777887 7999999999999998853322111100 00 01246667777752 2433333556653
Q ss_pred e---eEEEEEEEe--ec------CCCccccchhH
Q 039109 161 T---QIEAYFYLL--SL------EGCDAVLGAQW 183 (233)
Q Consensus 161 ~---~~~~~~~Vl--~l------~~~d~ILG~dw 183 (233)
. .+...|... +. ...|.|||+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~ 124 (383)
T 2ewy_A 91 GFNTSFLVNIATIFESENFFLPGIKWNGILGLAY 124 (383)
T ss_dssp TEEEEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred CccceeEEEEEEEEeecceeeccCcCceEEecCc
Confidence 2 111222221 11 24699999876
No 86
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=38.46 E-value=19 Score=18.91 Aligned_cols=12 Identities=42% Similarity=0.797 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHH
Q 039109 3 SEYQTRFERLLA 14 (233)
Q Consensus 3 ~eY~~~Fe~L~~ 14 (233)
+||+.+||+|..
T Consensus 11 eeflkkfeellk 22 (32)
T 1m3w_A 11 EEFLKKFEELLK 22 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 689999999875
No 87
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=38.32 E-value=25 Score=29.44 Aligned_cols=90 Identities=16% Similarity=0.266 Sum_probs=53.3
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHH--------------HHHHhCCc-cCC-------CceeEEEEcCCceecc
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHK--------------FAKITGLK-SEP-------GCLLSVVVANGEKLTS 147 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~--------------~a~~l~l~-~~~-------~~~~~v~~a~G~~~~~ 147 (233)
...+...|+ .+++.+++||||+..++... .+...+.- ... ..++.+..++|...
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~-- 90 (342)
T 3pvk_A 13 TYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFKIGYGDGSSS-- 90 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECSSSCEE--
T ss_pred EEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCCCCcCCCccCcceeecCCeEEEEecCCCeE--
Confidence 456677777 78999999999999988321 12211111 100 12456666777532
Q ss_pred CCceeceeEeecceeEE-EEEEEee-cCCCccccchhH
Q 039109 148 PGRCKGVQLQLQGTQIE-AYFYLLS-LEGCDAVLGAQW 183 (233)
Q Consensus 148 ~~~~~~~~~~i~g~~~~-~~~~Vl~-l~~~d~ILG~dw 183 (233)
.|..-.=.+.+++.... ..|-+.. ....|.|||+.+
T Consensus 91 ~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~GilGLg~ 128 (342)
T 3pvk_A 91 QGTLYKDTVGFGGVSIKNQVLADVDSTSIDQGILGVGY 128 (342)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSC
T ss_pred EEEEEEEEEEECCEEecceEEEEEEccCCCccEEEecC
Confidence 23333345677776554 4454443 346899999875
No 88
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=37.13 E-value=26 Score=29.17 Aligned_cols=89 Identities=19% Similarity=0.266 Sum_probs=52.7
Q ss_pred eEEEEEeeC--CeeEEEEEcCCCccccccHHH-----HHHhC-CccCC-------CceeEEEEcCCceeccCCceeceeE
Q 039109 92 TMRLQSSIS--KASLTILIDSGSTHNFLHHKF-----AKITG-LKSEP-------GCLLSVVVANGEKLTSPGRCKGVQL 156 (233)
Q Consensus 92 t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~-----a~~l~-l~~~~-------~~~~~v~~a~G~~~~~~~~~~~~~~ 156 (233)
...+...|+ .+++.+++||||+..++...- +...+ ..... ..++.+..++|.. .|..-.=.+
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~---~G~~~~D~v 89 (329)
T 1htr_B 13 AYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYSTNGQTFSLQYGSGSL---TGFFGYDTL 89 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEE---EEEEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCCCCcCCCccCCCeEECCcEEEEEeCCCCe---EEEEEeeeE
Confidence 456667777 689999999999998875422 11111 11100 1245667777652 344444467
Q ss_pred eecceeEE-EEEEEeec--------CCCccccchhH
Q 039109 157 QLQGTQIE-AYFYLLSL--------EGCDAVLGAQW 183 (233)
Q Consensus 157 ~i~g~~~~-~~~~Vl~l--------~~~d~ILG~dw 183 (233)
.+++.... ..|-+... ...|.|||+.+
T Consensus 90 ~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 125 (329)
T 1htr_B 90 TVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAY 125 (329)
T ss_dssp EETTEEEEEEEEEEESSCSSGGGGGCSCCEEEECCC
T ss_pred EEcceEECceEEEEEEEccccccccCCCceEEecCC
Confidence 77776554 44544432 24789999865
No 89
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=35.70 E-value=28 Score=23.27 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=34.0
Q ss_pred ccCCeEEEEEeeCCeeEEE-EEcCCCccccccHHHHHHhCCccC
Q 039109 88 QSPQTMRLQSSISKASLTI-LIDSGSTHNFLHHKFAKITGLKSE 130 (233)
Q Consensus 88 ~~~~t~~v~~~i~~~~~~~-LiDSGAt~nfIs~~~a~~l~l~~~ 130 (233)
+...+|.+.++.+++.+.+ =++..+|..-+-..++++.+++..
T Consensus 3 ~~~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~ 46 (90)
T 1v5t_A 3 SGSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPE 46 (90)
T ss_dssp CCCCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTT
T ss_pred CCCceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHH
Confidence 3445677778888888876 688888988899999999998753
No 90
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=35.61 E-value=34 Score=29.37 Aligned_cols=91 Identities=14% Similarity=0.169 Sum_probs=51.1
Q ss_pred CeEEEEEeeC--CeeEEEEEcCCCccccccHHHHHHhCC--ccC-------CCceeEEEEcCCceeccCCceeceeEeec
Q 039109 91 QTMRLQSSIS--KASLTILIDSGSTHNFLHHKFAKITGL--KSE-------PGCLLSVVVANGEKLTSPGRCKGVQLQLQ 159 (233)
Q Consensus 91 ~t~~v~~~i~--~~~~~~LiDSGAt~nfIs~~~a~~l~l--~~~-------~~~~~~v~~a~G~~~~~~~~~~~~~~~i~ 159 (233)
....+...|+ .+++.+++||||+..++...-+...+- ... ....+.+..++|.. .|..-.=.+.++
T Consensus 28 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~---~G~~~~D~v~ig 104 (402)
T 3vf3_A 28 QGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKW---EGELGTDLVSIP 104 (402)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEE---EEEEEEEEEECT
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCCceEEccCCCCcccCCcCcccCcccccCCCEEEEEECcEEE---EEEEEEEEEEEC
Confidence 3577788888 799999999999998884321111000 000 12345667777753 344433456665
Q ss_pred c-e--eEEEEEEEee--------cCCCccccchhHH
Q 039109 160 G-T--QIEAYFYLLS--------LEGCDAVLGAQWL 184 (233)
Q Consensus 160 g-~--~~~~~~~Vl~--------l~~~d~ILG~dwL 184 (233)
+ . .+...+.+.. ...+|.|||+.+-
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~ 140 (402)
T 3vf3_A 105 HGPNVTVRANIAAITESDKFFINGSNWEGILGLAYA 140 (402)
T ss_dssp TSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCG
T ss_pred CccccceeeeEEEEEccccccccCCCccceEEcCch
Confidence 2 2 2222222221 1347999998863
No 91
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.80 E-value=98 Score=20.69 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=34.8
Q ss_pred CCeEEEEEeeCCeeEEEEEcCCCccccccHHHHHHhCCccC
Q 039109 90 PQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSE 130 (233)
Q Consensus 90 ~~t~~v~~~i~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~ 130 (233)
..+|.+.++.+++.+.+=+|..+|..-+-..++...+++..
T Consensus 15 ~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~ 55 (95)
T 1v86_A 15 KELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPA 55 (95)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCST
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 34677888888988888999999999999999999998854
No 92
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=32.94 E-value=70 Score=21.01 Aligned_cols=44 Identities=11% Similarity=0.275 Sum_probs=36.0
Q ss_pred cccCCeEEEEEe-eCCeeEEEEEcCCCccccccHHHHHHhCCccC
Q 039109 87 VQSPQTMRLQSS-ISKASLTILIDSGSTHNFLHHKFAKITGLKSE 130 (233)
Q Consensus 87 ~~~~~t~~v~~~-i~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~ 130 (233)
...+..|.+.++ .+|+.+.+-++..+|..-+-..++++.|++..
T Consensus 12 ~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 56 (91)
T 3v6c_B 12 LVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPD 56 (91)
T ss_dssp CCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChh
Confidence 344567888887 57888888999999999999999999998753
No 93
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=32.49 E-value=77 Score=20.84 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=34.3
Q ss_pred ccccCCeEEEEEeeCCeeEEEEEcCC-----CccccccHHHHHHhCCcc
Q 039109 86 RVQSPQTMRLQSSISKASLTILIDSG-----STHNFLHHKFAKITGLKS 129 (233)
Q Consensus 86 g~~~~~t~~v~~~i~~~~~~~LiDSG-----At~nfIs~~~a~~l~l~~ 129 (233)
|.+...+|++.++..++...+=++.. +|..=+-..++...+++.
T Consensus 1 ~~~~~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~ 49 (92)
T 1wxv_A 1 GSSGSSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQ 49 (92)
T ss_dssp CCCCCSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCT
T ss_pred CCCCCCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCH
Confidence 34456678888888888887788875 788888888998888774
No 94
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=29.48 E-value=29 Score=19.11 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHhhcCCchh
Q 039109 5 YQTRFERLLARAGHLTDKQEAECFISGLKDG 35 (233)
Q Consensus 5 Y~~~Fe~L~~~~~~l~~~~~~~~F~~GL~~~ 35 (233)
=+..|=++.+ +++|+|++. .-||.-|+++
T Consensus 5 qQnaFYevLh-~~nLtEeQr-n~yI~slkdd 33 (34)
T 1l6x_B 5 CQRRFYEALH-DPNLNEEQR-NAKIKSIRDD 33 (34)
T ss_dssp HHHHHHHHHH-CTTCCHHHH-HHHHHHHHHC
T ss_pred HHHHHHHHHc-CCCCCHHHH-HhHHHHHhcc
Confidence 3567877776 699999987 5577777765
No 95
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=28.15 E-value=1e+02 Score=19.75 Aligned_cols=41 Identities=10% Similarity=0.237 Sum_probs=33.9
Q ss_pred CCeEEEEEe-eCCeeEEEEEcCCCccccccHHHHHHhCCccC
Q 039109 90 PQTMRLQSS-ISKASLTILIDSGSTHNFLHHKFAKITGLKSE 130 (233)
Q Consensus 90 ~~t~~v~~~-i~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~ 130 (233)
..+|.+.++ .+|+.+.+-++.-+|..-+-..++.+.++++.
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~ 51 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQ 51 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHH
Confidence 456777777 47888888999999999999999999998753
No 96
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=26.69 E-value=1.1e+02 Score=19.70 Aligned_cols=41 Identities=10% Similarity=0.205 Sum_probs=34.0
Q ss_pred cCCeEEEEEee-CCeeEEEEEcCCCccccccHHHHHHhCCcc
Q 039109 89 SPQTMRLQSSI-SKASLTILIDSGSTHNFLHHKFAKITGLKS 129 (233)
Q Consensus 89 ~~~t~~v~~~i-~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~ 129 (233)
.+..|.+.++. +|+.+.+-++.-+|..-+-..++.+.++++
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 55 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS 55 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCG
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 45678888886 688888889999999999999999998875
No 97
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=26.55 E-value=1.2e+02 Score=19.64 Aligned_cols=40 Identities=10% Similarity=0.209 Sum_probs=33.5
Q ss_pred CCeEEEEEee-CCeeEEEEEcCCCccccccHHHHHHhCCcc
Q 039109 90 PQTMRLQSSI-SKASLTILIDSGSTHNFLHHKFAKITGLKS 129 (233)
Q Consensus 90 ~~t~~v~~~i-~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~ 129 (233)
+.+|.+.++. +|+.+.+-|+.-.|..-+-..+..+.+++.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 43 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS 43 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCG
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 4678888876 688888889999999989999999998765
No 98
>1dee_G Immunoglobulin G binding protein A; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=25.50 E-value=33 Score=21.00 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCCChHHHHHHhhcCCchhhh
Q 039109 6 QTRFERLLARAGHLTDKQEAECFISGLKDGLR 37 (233)
Q Consensus 6 ~~~Fe~L~~~~~~l~~~~~~~~F~~GL~~~ir 37 (233)
...|=++.+ +++++|+.. .-|+.+|+++=+
T Consensus 6 Q~aFYeil~-lp~lte~qr-ng~i~slkddPs 35 (54)
T 1dee_G 6 QSAFYEILN-MPNLNEAQR-NGFIQSLKDDPS 35 (54)
T ss_dssp HHHHHHHHH-CSSSCHHHH-HHHHHHHHHCGG
T ss_pred HHHHHHHHc-CCCcchhhh-cccccccccCcc
Confidence 456777777 699999998 779999987644
No 99
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.15 E-value=1.3e+02 Score=19.72 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=34.7
Q ss_pred cCCeEEEEEeeCCeeEEEEEcCCCccccccHHHHHHhCCccC
Q 039109 89 SPQTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSE 130 (233)
Q Consensus 89 ~~~t~~v~~~i~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~ 130 (233)
.+.+|.+.++..++.+.+=++...|..-+-..++++.+++..
T Consensus 14 ~~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~ 55 (96)
T 1wx8_A 14 SSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNAD 55 (96)
T ss_dssp CSCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTT
T ss_pred CCCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHH
Confidence 456788888777888888899999999999999999988754
No 100
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.19 E-value=1.8e+02 Score=19.81 Aligned_cols=41 Identities=2% Similarity=0.130 Sum_probs=35.7
Q ss_pred CeEEEEEeeCCeeEEEEEcCCCccccccHHHHHHhCCccCC
Q 039109 91 QTMRLQSSISKASLTILIDSGSTHNFLHHKFAKITGLKSEP 131 (233)
Q Consensus 91 ~t~~v~~~i~~~~~~~LiDSGAt~nfIs~~~a~~l~l~~~~ 131 (233)
..+.+..+.+|+.+.+=+|..+|..=+-..+..+.|.|+..
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~ 48 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSK 48 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTT
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhH
Confidence 46778888999999999999999999999999999998653
No 101
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=22.77 E-value=73 Score=27.63 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=22.0
Q ss_pred CCeEEEEEeeCC--eeEEEEEcCCCcccccc
Q 039109 90 PQTMRLQSSISK--ASLTILIDSGSTHNFLH 118 (233)
Q Consensus 90 ~~t~~v~~~i~~--~~~~~LiDSGAt~nfIs 118 (233)
.....+...|+. +++.+++||||+..++.
T Consensus 19 ~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~ 49 (413)
T 3vla_A 19 TLQYVTTINQRTPLVSENLVVDLGGRFLWVD 49 (413)
T ss_dssp TCCEEEEEEETTTTEEEEEEEETTCSSEEEE
T ss_pred CCeEEEEEEcCCCCcceEEEEeCCChhhhcc
Confidence 344566667765 78999999999987774
No 102
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=21.13 E-value=1.7e+02 Score=18.71 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=32.9
Q ss_pred cccCCeEEEEEee-CC-eeEEEE-EcCCCccccccHHHHHHhCCcc
Q 039109 87 VQSPQTMRLQSSI-SK-ASLTIL-IDSGSTHNFLHHKFAKITGLKS 129 (233)
Q Consensus 87 ~~~~~t~~v~~~i-~~-~~~~~L-iDSGAt~nfIs~~~a~~l~l~~ 129 (233)
.....+|.+.++. +| +.+.+- ++.-+|..-+-..++.+.+++.
T Consensus 2 ~~~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~ 47 (89)
T 1wy8_A 2 SSGSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRP 47 (89)
T ss_dssp CCCSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCT
T ss_pred CCCCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcCh
Confidence 3455678888875 56 567663 8988999889999999988774
Done!