Citrus Sinensis ID: 039111

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-----
MLRKSEKTRIAFVMFASIFLVVMVVVATVSIGRRPNNGKSEVDVSSQSHDQVSASMKAIKTVCQPTDYQKQCVESLQTESGNTTDPKELIRAAFQVAKKHVAAAAKRSRTLKQLEKDPRASLALEDCNELMDEAIEDLQRSFEELGKSDRQARYKMGPMINNLKTWLSSTITYQETCLDGFENTTGEAGVKMREILKTSIELTINAIAMVSKISSILGNLDINREINLGSSHHRGLIENNAKVLGHGGIHVLEHGDLYPSWLGPRNRKLLGLIDQAQFKPDVVVAKDGSGNCTTINEALNFIPKKSNKTTTIYIKEGIYQEKVYLNRSMARVFMIGDGMYKTRITGNLNYVDGTPTMHTATVSVLGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDGSAFFQNCKIIVRKPLDNQHCIVTAQGRNVTHQPTAIVIQNSSIIADHVYWPVRNKIKSYLGRPWRIHSRTVIMETFIDDLIQPQGWLPWEGEFGIHTCFYAEYGNYGPGANKTGRVTWQGVKSIDRLEEAFEFTAGKFFDGDDWIKPRGVPYVSGFVTN
ccccccccEEEHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccccccHHHHHHccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHcccccccEEEEEEEcEEEEEEEEEccccccEEEEEcccccEEEEccccccccccccccEEEEEEEccEEEEccEEEEccccccccEEEEEEcccEEEEEccEEEEcccccccccccEEEEccEEEEEcEEEEccEEEEEEccEEEEEccccccccEEEccccccccccEEEEEEccEEEccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccEEEEEEcccccccccccccccccccccccHHHHcccccccEEcccccccccccccccccccc
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccEEEcccccccEccHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHcccHHHHccHHHccHHHccccccccccc
MLRKSEKTRIAFVMFASIFLVVMVVVATVsigrrpnngksevdvssqsHDQVSASMKAIKTvcqptdyqKQCVESlqtesgnttdpKELIRAAFQVAKKHVAAAAKRSRTLKQlekdpraslalEDCNELMDEAIEDLQRSFEELGKSDrqarykmgpmiNNLKTWLSSTITYQETcldgfenttgeAGVKMREILKTSIELTINAIAMVSKISSILgnldinreinlgsshhrgliennakvlghggihvlehgdlypswlgprnrkllglidqaqfkpdvvvakdgsgncttINEAlnfipkksnkttTIYIKEGIYQEKVYLNRSMARVFMIGDgmyktritgnlnyvdgtptmhTATVSVLGEffmaknigfensagpekHQAVALRVDADMSIfyncsmdgyqdTLYTHAKRQYYRDCTITGTidfifgdgsaffQNCKiivrkpldnqhcivtaqgrnvthqptAIVIQNssiiadhvYWPVRNKIksylgrpwrihsRTVIMETFIddliqpqgwlpwegefgihtcfyaeygnygpganktgrvtWQGVKSIDRLEEAFEftagkffdgddwikprgvpyvsgfvtn
mlrksektRIAFVMFASIFLVVMVVVATVSigrrpnngksevdvssqshDQVSASMKAIKTVCQPTDYQKQCVESLQtesgnttdpKELIRAAFQVAKKHVAAAAkrsrtlkqlekdprasLALEDCNELMDEAIEDLQRSFEELGKSDRQARYKMGPMINNLKTWLSSTITYQETCLDGFENTTGEAGVKMREILKTSIELTINAIAMVSKISSILGNLDINREINLGSSHHRGLIENNAKVLGHGGIHVLEHGDLYPSWLGPRNRKLLGLIDQAQFKPDVVVAKDGSGNCTTInealnfipkksnktTTIYIKEGIYQEKVYLNRSMARVFMIGDGMYKTRITGNLNYVDGTPTMHTATVSVLGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDGSAFFQNCKIIVRKPLDNQHCIVTaqgrnvthqpTAIVIQNssiiadhvyWPVRNKIksylgrpwrIHSRTVIMETFIDDLIQPQGWLPWEGEFGIHTCFYAEYGNYGPGANKTGRVTWQGVKSIDRLEEAFEFTagkffdgddwikprgvpyvsgfvtn
MLRKSEKTRIAFVMFASIFLVVMVVVATVSIGRRPNNGKsevdvssqshdqvsasMKAIKTVCQPTDYQKQCVESLQTESGNTTDPKELIRaafqvakkhvaaaakRSRTLKQLEKDPRASLALEDCNELMDEAIEDLQRSFEELGKSDRQARYKMGPMINNLKTWLSSTITYQETCLDGFENTTGEAGVKMREILKTSIELTINAIAMVSKISSILGNLDINREINLGSSHHRGLIENNAKVLGHGGIHVLEHGDLYPSWLGPRNRKLLGLIDQAQFKPDVVVAKDGSGNCTTINEALNFIPKKSNKTTTIYIKEGIYQEKVYLNRSMARVFMIGDGMYKTRITGNLNYVDGTPTMHTATVSVLGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDGSAFFQNCKIIVRKPLDNQHCIVTAQGRNVTHQPTAIVIQNSSIIADHVYWPVRNKIKSYLGRPWRIHSRTVIMETFIDDLIQPQGWLPWEGEFGIHTCFYAEYGNYGPGANKTGRVTWQGVKSIDRLEEAFEFTAGKFFDGDDWIKPRGVPYVSGFVTN
********RIAFVMFASIFLVVMVVVATVSIG**********************************************************RAAFQV*********************************************************YKMGPMINNLKTWLSSTITYQETCLDGFENTTGEAGVKMREILKTSIELTINAIAMVSKISSILGNLDINREINLGSSHHRGLIENNAKVLGHGGIHVLEHGDLYPSWLGPRNRKLLGLIDQAQFKPDVVVAKDGSGNCTTINEALNFIPKKSNKTTTIYIKEGIYQEKVYLNRSMARVFMIGDGMYKTRITGNLNYVDGTPTMHTATVSVLGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDGSAFFQNCKIIVRKPLDNQHCIVTAQGRNVTHQPTAIVIQNSSIIADHVYWPVRNKIKSYLGRPWRIHSRTVIMETFIDDLIQPQGWLPWEGEFGIHTCFYAEYGNYGPGANKTGRVTWQGVKSIDRLEEAFEFTAGKFFDGDDWIKPRGVPYVSGFV**
***********FVMFASIFLVVMVVVATVSIGR****************************VCQPTDYQKQCV***************LIRAAFQVAKKHVAAAA****************LALEDCNELMDEAIEDLQRSFEE*************PMINNLKTWLSSTITYQETCLDGFE******************ELTINAIAMVSKISSILGNL********************************EHGDLYPSWLGPRNRKLLGLIDQAQFKPDVVVAKDGSGNCTTINEALNFIPKKSNKTTTIYIKEGIYQEKVYLNRSMARVFMIGDGMYKTRITGNLNYVDGTPTMHTATVSVLGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDGSAFFQNCKIIVRKPLDNQHCIVTAQGRNVTHQPTAIVIQNSSIIADHVYWPVRNKIKSYLGRPWRIHSRTVIMETFIDDLIQPQGWLPWEGEFGIHTCFYAEYGNYGPGANKTGRVTWQGVKSIDRLEEAFEFTAGKFFDGDDWIKPRGVPYVSGFV**
MLRKSEKTRIAFVMFASIFLVVMVVVATVSIGRRPN*******************MKAIKTVCQPTDYQKQCVESLQTESGNTTDPKELIRAAFQV*************TLKQLEKDPRASLALEDCNELMDEAIEDLQRSFEELGKSDRQARYKMGPMINNLKTWLSSTITYQETCLDGFENTTGEAGVKMREILKTSIELTINAIAMVSKISSILGNLDINREINLGSSHHRGLIENNAKVLGHGGIHVLEHGDLYPSWLGPRNRKLLGLIDQAQFKPDVVVAKDGSGNCTTINEALNFIPKKSNKTTTIYIKEGIYQEKVYLNRSMARVFMIGDGMYKTRITGNLNYVDGTPTMHTATVSVLGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDGSAFFQNCKIIVRKPLDNQHCIVTAQGRNVTHQPTAIVIQNSSIIADHVYWPVRNKIKSYLGRPWRIHSRTVIMETFIDDLIQPQGWLPWEGEFGIHTCFYAEYGNYGPGANKTGRVTWQGVKSIDRLEEAFEFTAGKFFDGDDWIKPRGVPYVSGFVTN
**RKSEKTRIAFVMFASIFLVVMVVVATVSIGRRP******************ASMKAIKTVCQPTDYQKQCVESLQTESGNTTDPKELIRAAFQVAKKHVAAAAKRSRTLKQLEKDPRASLALEDCNELMDEAIEDLQRSFEELGKSDRQARYKMGPMINNLKTWLSSTITYQETCLDGFENTTGEAGVKMREILKTSIELTINAIAMVSKISSILGNLDIN**********************************YPSWLGPRNRKLLGLIDQAQFKPDVVVAKDGSGNCTTINEALNFIPKKSNKTTTIYIKEGIYQEKVYLNRSMARVFMIGDGMYKTRITGNLNYVDGTPTMHTATVSVLGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDGSAFFQNCKIIVRKPLDNQHCIVTAQGRNVTHQPTAIVIQNSSIIADHVYWPVRNKIKSYLGRPWRIHSRTVIMETFIDDLIQPQGWLPWEGEFGIHTCFYAEYGNYGPGANKTGRVTWQGVKSIDRLEEAFEFTAGKFFDGDDWIKPRGVPYVS*****
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLRKSEKTRIAFVMFASIFLVVMVVVATVSIGRRPNNGKSEVDVSSQSHDQVSASMKAIKTVCQPTDYQKQCVESLQTESGNTTDPKELIRAAFQVAKKHVAAAAKRSRTLKQLEKDPRASLAxxxxxxxxxxxxxxxxxxxxxLGKSDRQARYKMGPMINNLKTWLSSTITYQETCLDGFENTTGEAGVKMREILKTSIELTINAIAMVSKISSILGNLDINREINLGSSHHRGLIENNAKVLGHGGIHVLEHGDLYPSWLGPRNRKLLGLIDQAQFKPDVVVAKDGSGNCTTINEALNFIPKKSNKTTTIYIKEGIYQEKVYLNRSMARVFMIGDGMYKTRITGNLNYVDGTPTMHTATVSVLGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDGSAFFQNCKIIVRKPLDNQHCIVTAQGRNVTHQPTAIVIQNSSIIADHVYWPVRNKIKSYLGRPWRIHSRTVIMETFIDDLIQPQGWLPWEGEFGIHTCFYAEYGNYGPGANKTGRVTWQGVKSIDRLEEAFEFTAGKFFDGDDWIKPRGVPYVSGFVTN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query595 2.2.26 [Sep-21-2011]
Q8GX86 669 Probable pectinesterase/p yes no 0.931 0.828 0.476 1e-163
Q3E8Z8 732 Putative pectinesterase/p no no 0.924 0.751 0.477 1e-162
Q9FJ21571 Probable pectinesterase/p no no 0.941 0.980 0.439 1e-143
Q8GXA1568 Probable pectinesterase/p no no 0.875 0.917 0.416 1e-126
Q9SMY6609 Putative pectinesterase/p no no 0.857 0.837 0.418 1e-114
Q7Y201614 Probable pectinesterase/p no no 0.842 0.815 0.405 1e-109
Q9M9W7543 Putative pectinesterase/p no no 0.831 0.911 0.386 1e-109
Q42920447 Pectinesterase/pectineste N/A no 0.737 0.982 0.440 1e-109
Q9FF78564 Probable pectinesterase/p no no 0.902 0.952 0.390 1e-108
Q43143583 Pectinesterase/pectineste N/A no 0.929 0.948 0.375 1e-107
>sp|Q8GX86|PME21_ARATH Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2 Back     alignment and function desciption
 Score =  575 bits (1483), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 280/588 (47%), Positives = 390/588 (66%), Gaps = 34/588 (5%)

Query: 7   KTRIAFVMFASIFLVVMVVVATVSIGRRPNNGKSEVDVSSQSHDQVSASMKAIKTVCQPT 66
           K R   +  +S+ L+ MVV  TV +    ++G       S+   +V+AS+KA+K VC PT
Sbjct: 12  KRRYIVITISSVLLISMVVAVTVGVSLNKHDG------DSKGKAEVNASVKAVKDVCAPT 65

Query: 67  DYQKQCVESLQTESGNTTDPKELIRAAFQVAKKHVAAAAKRSRTLKQLEKDPRASLALED 126
           DY+K C ++L     NTTDP EL++ AF V  K +  AAK+S+T+ +L+KD R  +AL+ 
Sbjct: 66  DYRKTCEDTLIKNGKNTTDPMELVKTAFNVTMKQITDAAKKSQTIMELQKDSRTRMALDQ 125

Query: 127 CNELMDEAIEDLQRSFEELGKSDRQARYKMGPMINNLKTWLSSTITYQETCLDGFENTTG 186
           C ELMD A+++L  SFEELGK +    + +   + NL+ WLS+ I+++ETCL+GF+ T G
Sbjct: 126 CKELMDYALDELSNSFEELGKFEF---HLLDEALINLRIWLSAAISHEETCLEGFQGTQG 182

Query: 187 EAGVKMREILKTSIELTINAIAMVSKISSILGNLDINREINLGSSHHRGLIENNAKVLGH 246
            AG  M++ LKT+IELT N +A++S++S+ +G + I            GL  N+ ++L  
Sbjct: 183 NAGETMKKALKTAIELTHNGLAIISEMSNFVGQMQI-----------PGL--NSRRLLAE 229

Query: 247 GGIHVLEHGDLYPSWLGPRNRKLL-GLIDQAQFKPDVVVAKDGSGNCTTINEALNFIPKK 305
           G          +PSW+  R RKLL      +  KPD+VVA+DGSG   TINEAL F+PKK
Sbjct: 230 G----------FPSWVDQRGRKLLQAAAAYSDVKPDIVVAQDGSGQYKTINEALQFVPKK 279

Query: 306 SNKTTTIYIKEGIYQEKVYLNRSMARVFMIGDGMYKTRITGNLNYVDGTPTMHTATVSVL 365
            N T  ++IK G+Y+E V +N++M+ +  IGDG  KT I+GN NY DG  T  TATV+++
Sbjct: 280 RNTTFVVHIKAGLYKEYVQVNKTMSHLVFIGDGPDKTIISGNKNYKDGITTYRTATVAIV 339

Query: 366 GEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTI 425
           G +F+AKNIGFEN+AG  KHQAVA+RV +D SIF+NC  DGYQDTLYTH+ RQ++RDCTI
Sbjct: 340 GNYFIAKNIGFENTAGAIKHQAVAVRVQSDESIFFNCRFDGYQDTLYTHSHRQFFRDCTI 399

Query: 426 TGTIDFIFGDGSAFFQNCKIIVRKPLDNQHCIVTAQGRNVTHQPTAIVIQNSSIIADHVY 485
           +GTIDF+FGD +A FQNC ++VRKPL NQ C +TA GR    + T  V Q  +I  +  Y
Sbjct: 400 SGTIDFLFGDAAAVFQNCTLLVRKPLPNQACPITAHGRKDPRESTGFVFQGCTIAGEPDY 459

Query: 486 WPVRNKIKSYLGRPWRIHSRTVIMETFIDDLIQPQGWLPWEGEFGIHTCFYAEYGNYGPG 545
             V+   K+YLGRPW+ +SRT+IM TFI D +QPQGW PW G+FG+ T FY+E  N GPG
Sbjct: 460 LAVKETSKAYLGRPWKEYSRTIIMNTFIPDFVQPQGWQPWLGDFGLKTLFYSEVQNTGPG 519

Query: 546 ANKTGRVTWQGVKSIDRLEEAFEFTAGKFFDGDDWIKPRGVPYVSGFV 593
           +    RVTW G+K++   E+  +FT  ++  GDDWI  +GVPY +G +
Sbjct: 520 SALANRVTWAGIKTLSE-EDILKFTPAQYIQGDDWIPGKGVPYTTGLL 566
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q3E8Z8|PME28_ARATH Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1 Back     alignment and function description
>sp|Q9FJ21|PME58_ARATH Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXA1|PME23_ARATH Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3 Back     alignment and function description
>sp|Q9SMY6|PME45_ARATH Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1 Back     alignment and function description
>sp|Q7Y201|PME13_ARATH Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=2 Back     alignment and function description
>sp|Q9M9W7|PME22_ARATH Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1 Back     alignment and function description
>sp|Q42920|PME_MEDSA Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|Q9FF78|PME46_ARATH Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1 Back     alignment and function description
>sp|Q43143|PMEU1_SOLLC Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query595
296089718 769 unnamed protein product [Vitis vinifera] 0.952 0.737 0.546 0.0
255542792582 Pectinesterase precursor, putative [Rici 0.949 0.970 0.555 0.0
359487645 1700 PREDICTED: uncharacterized protein LOC10 0.952 0.333 0.546 0.0
224123842578 predicted protein [Populus trichocarpa] 0.947 0.975 0.535 0.0
359477243585 PREDICTED: putative pectinesterase/pecti 0.952 0.969 0.542 0.0
449435986583 PREDICTED: putative pectinesterase/pecti 0.942 0.962 0.536 1e-179
224123042577 predicted protein [Populus trichocarpa] 0.949 0.979 0.534 1e-179
224107068571 predicted protein [Populus trichocarpa] 0.939 0.978 0.547 1e-177
449433415573 PREDICTED: probable pectinesterase/pecti 0.957 0.994 0.518 1e-170
449503871570 PREDICTED: probable pectinesterase/pecti 0.954 0.996 0.521 1e-170
>gi|296089718|emb|CBI39537.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/591 (54%), Positives = 425/591 (71%), Gaps = 24/591 (4%)

Query: 4   KSEKTRIAFVMFASIFLVVMVVVATVSIGRRPNNGKSEVDVSSQSHDQVSASMKAIKTVC 63
           + +K ++A + F+SIFLV MV+    S+        S  D  +    ++S+SMKAI+ +C
Sbjct: 10  RGKKKKLAIIGFSSIFLVAMVIAVIASVS------SSSSDSGNAQKQEISSSMKAIQAIC 63

Query: 64  QPTDYQKQCVESLQTESGNTTDPKELIRAAFQVAKKHVAAAAKRSRTLKQLEKDPRASLA 123
           QPTDY+  CV SL +++GNTTDPK+L++AAF  A +H++AAAK S  L++L KDPRAS A
Sbjct: 64  QPTDYKDACVNSLTSKAGNTTDPKDLVQAAFASAMEHLSAAAKNSTLLQELNKDPRASQA 123

Query: 124 LEDCNELMDEAIEDLQRSFEELGKSDRQARYKMGPMINNLKTWLSSTITYQETCLDGFEN 183
           L++C +L++ AI+DL++SF ++G  D     KM  +I ++K WLS+ ITYQETCLDGFEN
Sbjct: 124 LQNCEDLVNYAIDDLKKSFNQVGDFDYS---KMDNIIADIKIWLSAVITYQETCLDGFEN 180

Query: 184 TTGEAGVKMREILKTSIELTINAIAMVSKISSILGNLDINREINLGSSHHRGLIENNAKV 243
           TTG+AG KMR+ILKTS+EL+ N +A+V ++SSIL NL       L + + R L ++ A  
Sbjct: 181 TTGDAGEKMRQILKTSMELSSNGLAIVGEVSSILSNL------QLANLNRRLLSDDPADP 234

Query: 244 LGHGGIHVLEHGDLYPSWLGPRNRKLLGLIDQAQFKPDVVVAKDGSGNCTTINEALNFIP 303
             H         D +P W     RKLL   + ++ KP++ VAKDGSG+  TINEA+  +P
Sbjct: 235 DNH-------IDDEFPYWSHSEGRKLLQ-ANVSELKPNLTVAKDGSGDFKTINEAIRQLP 286

Query: 304 KKSNKTTTIYIKEGIYQEKVYLNRSMARVFMIGDGMYKTRITGNLNYVDGTPTMHTATVS 363
           K SN+T  +YIK+GIY+E+V +N++   + M+GDG  KT+ITG+LN+VDGTPT  TATV+
Sbjct: 287 KFSNQTFILYIKKGIYEEQVQINKTFTNLMMVGDGPTKTKITGSLNFVDGTPTFKTATVA 346

Query: 364 VLGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDC 423
           VLG+ F+AK IGFENSAG  KHQAVALRV +D SIFYNC MDGYQDTLYTH KRQ+YRDC
Sbjct: 347 VLGDGFIAKGIGFENSAGAAKHQAVALRVQSDRSIFYNCQMDGYQDTLYTHTKRQFYRDC 406

Query: 424 TITGTIDFIFGDGSAFFQNCKIIVRKPLDNQHCIVTAQGRNVTHQPTAIVIQNSSIIADH 483
           TI+GTIDFIFGD +  FQNC  +VRKPLDNQ CIVTAQGR    QP+AI+IQNS+  AD 
Sbjct: 407 TISGTIDFIFGDAAVIFQNCTFVVRKPLDNQQCIVTAQGRKERRQPSAIIIQNSTFTADP 466

Query: 484 VYWPVRNKIKSYLGRPWRIHSRTVIMETFIDDLIQPQGWLPWEGEFGIHTCFYAEYGNYG 543
            Y+P RN++KSYLGRPW+  SRT+IME++I+DLIQP GWLPW G+F + TCFY E+ N G
Sbjct: 467 EYYPYRNELKSYLGRPWKEFSRTIIMESYIEDLIQPSGWLPWAGDFALRTCFYTEFRNRG 526

Query: 544 PGANKTGRVTWQGVKSIDRLEEAFEFTAGKFFDGDDWIKPRGVPYVSGFVT 594
           PGA    RV W+G+K+I +   A +F  G+F  GD WI   GVPY SG  T
Sbjct: 527 PGAKTHDRVKWRGIKTI-KPSHAIDFAPGRFLSGDRWIPSTGVPYNSGLFT 576

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255542792|ref|XP_002512459.1| Pectinesterase precursor, putative [Ricinus communis] gi|223548420|gb|EEF49911.1| Pectinesterase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359487645|ref|XP_002279164.2| PREDICTED: uncharacterized protein LOC100249393 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224123842|ref|XP_002330222.1| predicted protein [Populus trichocarpa] gi|222871678|gb|EEF08809.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359477243|ref|XP_003631952.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 28-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449435986|ref|XP_004135775.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 28-like [Cucumis sativus] gi|449485857|ref|XP_004157292.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 28-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224123042|ref|XP_002318979.1| predicted protein [Populus trichocarpa] gi|222857355|gb|EEE94902.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224107068|ref|XP_002314364.1| predicted protein [Populus trichocarpa] gi|222863404|gb|EEF00535.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449433415|ref|XP_004134493.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 21-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449503871|ref|XP_004162213.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 21-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query595
TAIR|locus:2078057 669 AT3G05610 [Arabidopsis thalian 0.563 0.500 0.543 1.4e-142
TAIR|locus:2129865701 AT4G15980 [Arabidopsis thalian 0.564 0.479 0.508 4.2e-115
TAIR|locus:2155884571 AT5G49180 [Arabidopsis thalian 0.749 0.781 0.472 9.4e-114
TAIR|locus:2083308568 AT3G06830 [Arabidopsis thalian 0.862 0.903 0.408 1.7e-105
TAIR|locus:2125959609 AT4G33230 [Arabidopsis thalian 0.561 0.548 0.501 7.3e-105
TAIR|locus:2143340 732 AT5G27870 [Arabidopsis thalian 0.803 0.653 0.446 6e-103
TAIR|locus:2078047543 AT3G05620 [Arabidopsis thalian 0.542 0.594 0.483 1.4e-99
TAIR|locus:2175319564 AT5G04960 [Arabidopsis thalian 0.536 0.565 0.493 1.3e-96
TAIR|locus:2091000592 PME3 "pectin methylesterase 3" 0.947 0.952 0.365 2.2e-96
TAIR|locus:2200076557 PMEPCRA "methylesterase PCR A" 0.556 0.594 0.487 6.9e-96
TAIR|locus:2078057 AT3G05610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1012 (361.3 bits), Expect = 1.4e-142, Sum P(2) = 1.4e-142
 Identities = 183/337 (54%), Positives = 240/337 (71%)

Query:   258 YPSWLGPRNRKLL-GLIDQAQFKPDVVVAKDGSGNCTTINEALNFIPKKSNKTTTIYIKE 316
             +PSW+  R RKLL      +  KPD+VVA+DGSG   TINEAL F+PKK N T  ++IK 
Sbjct:   231 FPSWVDQRGRKLLQAAAAYSDVKPDIVVAQDGSGQYKTINEALQFVPKKRNTTFVVHIKA 290

Query:   317 GIYQEKVYLNRSMARVFMIGDGMYKTRITGNLNYVDGTPTMHTATVSVLGEFFMAKNIGF 376
             G+Y+E V +N++M+ +  IGDG  KT I+GN NY DG  T  TATV+++G +F+AKNIGF
Sbjct:   291 GLYKEYVQVNKTMSHLVFIGDGPDKTIISGNKNYKDGITTYRTATVAIVGNYFIAKNIGF 350

Query:   377 ENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDG 436
             EN+AG  KHQAVA+RV +D SIF+NC  DGYQDTLYTH+ RQ++RDCTI+GTIDF+FGD 
Sbjct:   351 ENTAGAIKHQAVAVRVQSDESIFFNCRFDGYQDTLYTHSHRQFFRDCTISGTIDFLFGDA 410

Query:   437 SAFFQNCKIIVRKPLDNQHCIVTAQGRNVTHQPTAIVIQNSSIIADHVYWPVRNKIKSYL 496
             +A FQNC ++VRKPL NQ C +TA GR    + T  V Q  +I  +  Y  V+   K+YL
Sbjct:   411 AAVFQNCTLLVRKPLPNQACPITAHGRKDPRESTGFVFQGCTIAGEPDYLAVKETSKAYL 470

Query:   497 GRPWRIHSRTVIMETFIDDLIQPQGWLPWEGEFGIHTCFYAEYGNYGPGANKTGRVTWQG 556
             GRPW+ +SRT+IM TFI D +QPQGW PW G+FG+ T FY+E  N GPG+    RVTW G
Sbjct:   471 GRPWKEYSRTIIMNTFIPDFVQPQGWQPWLGDFGLKTLFYSEVQNTGPGSALANRVTWAG 530

Query:   557 VKSIDRLEEAFEFTAGKFFDGDDWIKPRGVPYVSGFV 593
             +K++   E+  +FT  ++  GDDWI  +GVPY +G +
Sbjct:   531 IKTLSE-EDILKFTPAQYIQGDDWIPGKGVPYTTGLL 566
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
GO:0009827 "plant-type cell wall modification" evidence=RCA
TAIR|locus:2129865 AT4G15980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155884 AT5G49180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083308 AT3G06830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125959 AT4G33230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143340 AT5G27870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078047 AT3G05620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175319 AT5G04960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091000 PME3 "pectin methylesterase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200076 PMEPCRA "methylesterase PCR A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GX86PME21_ARATH3, ., 1, ., 1, ., 1, 10.47610.93100.8281yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.824
3rd Layer3.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00022687001
RecName- Full=Pectinesterase; EC=3.1.1.11; (589 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query595
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 0.0
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 0.0
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 0.0
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 1e-180
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-172
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-167
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-145
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-145
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-141
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-138
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-136
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-133
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-132
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-131
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-127
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-120
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-118
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-117
PLN02197588 PLN02197, PLN02197, pectinesterase 1e-107
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-107
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-106
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-95
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-60
PLN02773317 PLN02773, PLN02773, pectinesterase 1e-58
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 3e-53
PLN02304379 PLN02304, PLN02304, probable pectinesterase 7e-53
PLN02432293 PLN02432, PLN02432, putative pectinesterase 1e-51
PLN02497331 PLN02497, PLN02497, probable pectinesterase 3e-51
PLN02671359 PLN02671, PLN02671, pectinesterase 9e-51
PLN02634359 PLN02634, PLN02634, probable pectinesterase 1e-46
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 6e-44
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 7e-40
PLN02176340 PLN02176, PLN02176, putative pectinesterase 9e-40
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 7e-38
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 9e-35
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 7e-20
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 2e-18
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  605 bits (1560), Expect = 0.0
 Identities = 280/590 (47%), Positives = 390/590 (66%), Gaps = 40/590 (6%)

Query: 7   KTRIAFVMFASIFLVVMVVVAT--VSIGRRPNNGKSEVDVSSQSHDQVSASMKAIKTVCQ 64
           K R   +  +S+ L+ MVV  T  VS+ +  N GK E+          + S+KAIK VC 
Sbjct: 12  KKRYVIISISSVLLISMVVAVTIGVSVNKSDNEGKGEI----------TTSVKAIKDVCA 61

Query: 65  PTDYQKQCVESLQTESGNTTDPKELIRAAFQVAKKHVAAAAKRSRTLKQLEKDPRASLAL 124
           PTDY++ C ++L+ ++ NT+DP EL++ AF    K ++  AK+S+T+ +L+KDPR  +AL
Sbjct: 62  PTDYKETCEDTLRKDAKNTSDPLELVKTAFNATMKQISDVAKKSQTMIELQKDPRTKMAL 121

Query: 125 EDCNELMDEAIEDLQRSFEELGKSDRQARYKMGPMINNLKTWLSSTITYQETCLDGFENT 184
           + C ELMD AI +L +SFEELGK +    +K+   +  L+ WLS+TI++++TCLDGF+ T
Sbjct: 122 DQCKELMDYAIGELSKSFEELGKFEF---HKVDEALIKLRIWLSATISHEQTCLDGFQGT 178

Query: 185 TGEAGVKMREILKTSIELTINAIAMVSKISSILGNLDINREINLGSSHHRGLIENNAKVL 244
            G AG  +++ LKT+++LT N +AMVS++S+ LG + I                N+ ++L
Sbjct: 179 QGNAGETIKKALKTAVQLTHNGLAMVSEMSNYLGQMQIPEM-------------NSRRLL 225

Query: 245 GHGGIHVLEHGDLYPSWLGPRNRKLLGLIDQAQFKPDVVVAKDGSGNCTTINEALNFIPK 304
                        +PSW+  R R+LL     ++ KPD+VVA+DGSG   TINEALNF+PK
Sbjct: 226 SQE----------FPSWMDQRARRLLN-APMSEVKPDIVVAQDGSGQYKTINEALNFVPK 274

Query: 305 KSNKTTTIYIKEGIYQEKVYLNRSMARVFMIGDGMYKTRITGNLNYVDGTPTMHTATVSV 364
           K N T  ++IK GIY+E V +NRSM  +  IGDG  KT I+G+ +Y DG  T  TATV++
Sbjct: 275 KKNTTFVVHIKAGIYKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAI 334

Query: 365 LGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCT 424
           +G+ F+AKNIGFEN+AG  KHQAVA+RV +D SIFYNC  DGYQDTLY H+ RQ+YRDCT
Sbjct: 335 VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCT 394

Query: 425 ITGTIDFIFGDGSAFFQNCKIIVRKPLDNQHCIVTAQGRNVTHQPTAIVIQNSSIIADHV 484
           I+GTIDF+FGD +A FQNC ++VRKPL NQ C +TA GR    + T  V+Q  +I+ +  
Sbjct: 395 ISGTIDFLFGDAAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEPD 454

Query: 485 YWPVRNKIKSYLGRPWRIHSRTVIMETFIDDLIQPQGWLPWEGEFGIHTCFYAEYGNYGP 544
           Y  V+   K+YLGRPW+ +SRT+IM TFI D + P+GW PW G+FG++T FY+E  N GP
Sbjct: 455 YLAVKETSKAYLGRPWKEYSRTIIMNTFIPDFVPPEGWQPWLGDFGLNTLFYSEVQNTGP 514

Query: 545 GANKTGRVTWQGVKSIDRLEEAFEFTAGKFFDGDDWIKPRGVPYVSGFVT 594
           GA  T RVTW G+K +   EE  +FT  ++  GD WI  +GVPY+ G   
Sbjct: 515 GAAITKRVTWPGIKKLSD-EEILKFTPAQYIQGDAWIPGKGVPYIPGLFA 563

Length = 670
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 595
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671359 pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02497331 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02773317 pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02480343 Probable pectinesterase 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.95
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.93
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.91
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.28
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.46
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.42
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.34
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.06
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 96.78
KOG1777 625 consensus Putative Zn-finger protein [General func 96.55
PRK10531422 acyl-CoA thioesterase; Provisional 96.22
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 95.95
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.94
PLN02773317 pectinesterase 95.94
PLN02682369 pectinesterase family protein 95.93
PLN02176340 putative pectinesterase 95.74
PLN02634359 probable pectinesterase 95.53
PLN02793443 Probable polygalacturonase 95.47
PLN02665366 pectinesterase family protein 95.4
PLN02480343 Probable pectinesterase 95.37
PLN02671359 pectinesterase 95.28
PLN02218431 polygalacturonase ADPG 95.09
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.08
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 94.96
PLN02304379 probable pectinesterase 94.9
PLN02497331 probable pectinesterase 94.88
PLN02197588 pectinesterase 94.84
PLN02432293 putative pectinesterase 94.84
PLN03010409 polygalacturonase 94.83
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.44
PLN03003456 Probable polygalacturonase At3g15720 94.35
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 94.2
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 94.06
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 94.06
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 94.03
PLN02314586 pectinesterase 94.02
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 94.01
PLN02313587 Pectinesterase/pectinesterase inhibitor 94.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 93.83
PLN02916502 pectinesterase family protein 93.8
PLN02506537 putative pectinesterase/pectinesterase inhibitor 93.78
PLN02416541 probable pectinesterase/pectinesterase inhibitor 93.76
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 93.74
PLN02170529 probable pectinesterase/pectinesterase inhibitor 93.47
PLN02301548 pectinesterase/pectinesterase inhibitor 93.46
PLN02468565 putative pectinesterase/pectinesterase inhibitor 93.14
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 93.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 92.99
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 92.45
smart00656190 Amb_all Amb_all domain. 92.24
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 90.82
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 89.34
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 88.9
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 88.82
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 87.98
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 84.78
PLN02155394 polygalacturonase 82.78
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 82.01
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=9.5e-154  Score=1278.40  Aligned_cols=554  Identities=49%  Similarity=0.903  Sum_probs=504.7

Q ss_pred             ccCCceehhhHHHHHHHHhheeeEEEeecCCCCCCCCccccCCCCccccchhHHHhcccCCCCChhhhHHHhcccCCCCC
Q 039111            5 SEKTRIAFVMFASIFLVVMVVVATVSIGRRPNNGKSEVDVSSQSHDQVSASMKAIKTVCQPTDYQKQCVESLQTESGNTT   84 (595)
Q Consensus         5 ~~~~~~~i~~~s~illv~~vi~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~C~~T~yp~~C~ssLs~~~~~~~   84 (595)
                      |++||++|++++++|||++||++++++..+.+++ .       +.....++.+.|+.+|+.|+||++|+++|++.+....
T Consensus        10 ~~~~~~~~~~~~~~llv~~v~~~~~~~~~~~~~~-~-------~~~~~~~~~~~Ikt~C~sT~YP~lC~sSLs~~~~~~~   81 (670)
T PLN02217         10 KRKKRYVIISISSVLLISMVVAVTIGVSVNKSDN-E-------GKGEITTSVKAIKDVCAPTDYKETCEDTLRKDAKNTS   81 (670)
T ss_pred             hccceeehHHHHHHHHHHHHHheeEEEeccccCC-C-------CccccchHHHHHHHHhcCCCCcHHHHHHhhhhcccCC
Confidence            3467999999999999999999988877654332 1       0112335667999999999999999999998764456


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccCcchhhHH
Q 039111           85 DPKELIRAAFQVAKKHVAAAAKRSRTLKQLEKDPRASLALEDCNELMDEAIEDLQRSFEELGKSDRQARYKMGPMINNLK  164 (595)
Q Consensus        85 dp~~li~~al~~t~~~~~~a~~~~~~l~~~~~d~~~k~AL~DC~el~~~Aid~L~~S~~~l~~~~~~~~~~~~~~~~Dl~  164 (595)
                      +|++|++++|+++++++.++...++.+....++++++.||+||+|||++++|+|++++++|...+..   .+....+||+
T Consensus        82 ~p~dLi~aaL~vTl~a~~~a~~~~s~L~~~~~~~r~k~AL~DClELlddAvDeL~~Sl~~L~~~~~~---~~~~~~dDvq  158 (670)
T PLN02217         82 DPLELVKTAFNATMKQISDVAKKSQTMIELQKDPRTKMALDQCKELMDYAIGELSKSFEELGKFEFH---KVDEALIKLR  158 (670)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccccchhHHH
Confidence            9999999999999999999998887554445789999999999999999999999999999854332   2345679999


Q ss_pred             HHHHHhhhhhhhhhhhccCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccccCccccccccCCCCCCCccccccccc
Q 039111          165 TWLSSTITYQETCLDGFENTTGEAGVKMREILKTSIELTINAIAMVSKISSILGNLDINREINLGSSHHRGLIENNAKVL  244 (595)
Q Consensus       165 TWLSAAlT~q~TClDGF~~~~~~~~~~l~~~l~~~~~L~SNaLAiv~~l~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~  244 (595)
                      ||||||||||+||+|||++.++.+++.|+..+.++.||+||+|||++++...+.++.++.      ..+|+|++      
T Consensus       159 TWLSAALTnQdTClDGF~~~~~~vk~~m~~~l~nvseLtSNALAmv~~lss~~~~~~~~~------~~~r~l~~------  226 (670)
T PLN02217        159 IWLSATISHEQTCLDGFQGTQGNAGETIKKALKTAVQLTHNGLAMVSEMSNYLGQMQIPE------MNSRRLLS------  226 (670)
T ss_pred             HHHHHHHhchhHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC------cccccccc------
Confidence            999999999999999998766678999999999999999999999999887666554421      13577775      


Q ss_pred             CCCCcccccCCCCCCccccccccccccccccCCCCCcEEEcCCCCCCcccHHHHHhhCcCCCCceEEEEEecceeEeEEE
Q 039111          245 GHGGIHVLEHGDLYPSWLGPRNRKLLGLIDQAQFKPDVVVAKDGSGNCTTINEALNFIPKKSNKTTTIYIKEGIYQEKVY  324 (595)
Q Consensus       245 ~~~~~~~~~~~~~~p~w~~~~~r~ll~~~~~~~~~~~~~Va~dgsg~f~TI~~Ai~a~p~~~~~~~~I~I~~G~Y~E~v~  324 (595)
                               ++  ||+|++.+|||||+... ..++++++|++||+|+|+|||+||+++|+++.+|++||||+|+|+|+|+
T Consensus       227 ---------~~--~P~W~~~~dRrlL~~~~-~~~~~~~vVa~dGsG~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY~E~V~  294 (670)
T PLN02217        227 ---------QE--FPSWMDQRARRLLNAPM-SEVKPDIVVAQDGSGQYKTINEALNFVPKKKNTTFVVHIKAGIYKEYVQ  294 (670)
T ss_pred             ---------cC--CCCCCChhhhhhhcCCc-ccCCccEEECCCCCCCccCHHHHHHhccccCCceEEEEEeCCceEEEEE
Confidence                     15  99999999999998754 4688999999999999999999999999999999999999999999999


Q ss_pred             EeeecceEEEEecCCCCeEEeCCccccCCCCCccceEEEEecccEEEEEEEEecCCCCCcCceeEEEecCCceEEEEeEE
Q 039111          325 LNRSMARVFMIGDGMYKTRITGNLNYVDGTPTMHTATVSVLGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSM  404 (595)
Q Consensus       325 i~~~~~~itl~G~g~~~tiI~~~~~~~~g~~t~~sat~~v~~~~f~~~~itf~Nt~g~~~~qAvAl~v~~d~~~f~~C~~  404 (595)
                      |+++|+||||+|+|+++|||+|++++.+|++||++|||.|.|++|+++||||+|++|+.+|||||||+.+|+++||||+|
T Consensus       295 I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f  374 (670)
T PLN02217        295 VNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKF  374 (670)
T ss_pred             EcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecceeeecCceeEeeccEEecccceeeCCcceEEEeeEEEEecCCCCcceEEEecCCCCCCCCeeEEEEccEEeecCC
Q 039111          405 DGYQDTLYTHAKRQYYRDCTITGTIDFIFGDGSAFFQNCKIIVRKPLDNQHCIVTAQGRNVTHQPTAIVIQNSSIIADHV  484 (595)
Q Consensus       405 ~g~QDTLy~~~~rq~y~~C~I~GtvDfIfG~a~avfq~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~v~~~c~i~~~~~  484 (595)
                      +|||||||+|++|||||+|+|+|+||||||+|++|||||+|++|+|+++|.|+||||||.++++++||||+||+|+++++
T Consensus       375 ~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~~  454 (670)
T PLN02217        375 DGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEPD  454 (670)
T ss_pred             eeccchhccCCCcEEEEeCEEEEeccEEecCceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecCcc
Confidence            99999999999999999999999999999999999999999999998889999999999999999999999999999998


Q ss_pred             CcccccccceeecCCCCCcceEEEEecccCCccCCCCCCCCCCCCCccccEEEEecccCCCCCCCCcccccCccCCCcHH
Q 039111          485 YWPVRNKIKSYLGRPWRIHSRTVIMETFIDDLIQPQGWLPWEGEFGIHTCFYAEYGNYGPGANKTGRVTWQGVKSIDRLE  564 (595)
Q Consensus       485 ~~~~~~~~~~yLGRpW~~~sr~v~~~s~~~~~I~p~Gw~~w~~~~~~~t~~~~Ey~n~Gpga~~~~Rv~w~g~~~l~~~~  564 (595)
                      +.+.+...++||||||++|+|||||+|+|+++|+|+||.+|++++.++|+||+||+|+|||+++++||+|+||++|++ +
T Consensus       455 ~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~I~P~GW~~W~~~~~~~t~~yaEY~n~GpGa~~s~Rv~W~g~~~lt~-~  533 (670)
T PLN02217        455 YLAVKETSKAYLGRPWKEYSRTIIMNTFIPDFVPPEGWQPWLGDFGLNTLFYSEVQNTGPGAAITKRVTWPGIKKLSD-E  533 (670)
T ss_pred             ccccccccceeeccCCCCCceEEEEecccCCeEcCcccCccCCCCCCCceEEEEeccccCCCCcCCCccccCcccCCH-H
Confidence            877766789999999999999999999999999999999999999999999999999999999999999999999998 8


Q ss_pred             HHccccccceecCCCCCCCCCCcccCCCCC
Q 039111          565 EAFEFTAGKFFDGDDWIKPRGVPYVSGFVT  594 (595)
Q Consensus       565 ~a~~~t~~~f~~g~~W~~~~~vp~~~gl~~  594 (595)
                      ||.+||+++||+|+.|+|.+||||.+||+.
T Consensus       534 eA~~ft~~~fi~g~~Wlp~~~~p~~~gl~~  563 (670)
T PLN02217        534 EILKFTPAQYIQGDAWIPGKGVPYIPGLFA  563 (670)
T ss_pred             HHHHhhHHhccCCCCCCCCCCCcccccccc
Confidence            999999999999999999999999999853

>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query595
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 8e-84
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 1e-81
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 6e-22
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 7e-22
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 5e-21
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 1e-19
3grh_A422 Crystal Structure Of Escherichia Coli Ybhc Length = 3e-04
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  308 bits (788), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 143/312 (45%), Positives = 200/312 (64%)
Query: 281 DVVVAKDGSGNCTTINEALNFIPKKSNKTTTIYIKEGIYQEKVYLNRSMARVFMIGDGMY 340
           + VVA+DG+G+  T+ EA+   P KS     IY+K G Y+E V +  +   + ++GDGMY
Sbjct: 4   NAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMY 63
Query: 341 KTRITGNLNYVDGTPTMHTATVSVLGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFY 400
            T ITG+LN VDG+ T  +AT++ +G+ F+ ++I  +N+AGP K QAVALRV ADMS+  
Sbjct: 64  ATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVIN 123
Query: 401 NCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDGSAFFQNCKIIVRKPLDNQHCIVTA 460
            C +D YQDTLY H++RQ+YRD  +TGT+DFIFG+ +  FQ C+++ RKP   Q  +VTA
Sbjct: 124 RCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTA 183
Query: 461 QGRNVTHQPTAIVIQNSSIIADHVYWPVRNKIKSYLGRPWRIHSRTVIMETFIDDLIQPQ 520
           QGR   +Q T   IQ  +IIA     PV  +  +YLGRPW+ +SRTV+ME+++  LI P 
Sbjct: 184 QGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPA 243
Query: 521 GWLPWEGEFGIHTCFYAEYGNYGPGANKTGRVTWQGVKSIDRLEEAFEFTAGKFFDGDDW 580
           GW  W+G+F + T +Y E+ N GPGA  + RV W G   I    +A  FT  K   G  W
Sbjct: 244 GWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSW 303
Query: 581 IKPRGVPYVSGF 592
           ++  GV YV G 
Sbjct: 304 LRSTGVAYVDGL 315
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure
>pdb|3GRH|A Chain A, Crystal Structure Of Escherichia Coli Ybhc Length = 422 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query595
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-163
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-162
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-121
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-121
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-103
1x91_A153 Invertase/pectin methylesterase inhibitor family p 5e-38
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 4e-35
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 4e-24
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-10
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  468 bits (1206), Expect = e-163
 Identities = 143/314 (45%), Positives = 200/314 (63%)

Query: 279 KPDVVVAKDGSGNCTTINEALNFIPKKSNKTTTIYIKEGIYQEKVYLNRSMARVFMIGDG 338
             + VVA+DG+G+  T+ EA+   P KS     IY+K G Y+E V +  +   + ++GDG
Sbjct: 2   IANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDG 61

Query: 339 MYKTRITGNLNYVDGTPTMHTATVSVLGEFFMAKNIGFENSAGPEKHQAVALRVDADMSI 398
           MY T ITG+LN VDG+ T  +AT++ +G+ F+ ++I  +N+AGP K QAVALRV ADMS+
Sbjct: 62  MYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSV 121

Query: 399 FYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDGSAFFQNCKIIVRKPLDNQHCIV 458
              C +D YQDTLY H++RQ+YRD  +TGT+DFIFG+ +  FQ C+++ RKP   Q  +V
Sbjct: 122 INRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMV 181

Query: 459 TAQGRNVTHQPTAIVIQNSSIIADHVYWPVRNKIKSYLGRPWRIHSRTVIMETFIDDLIQ 518
           TAQGR   +Q T   IQ  +IIA     PV  +  +YLGRPW+ +SRTV+ME+++  LI 
Sbjct: 182 TAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLIN 241

Query: 519 PQGWLPWEGEFGIHTCFYAEYGNYGPGANKTGRVTWQGVKSIDRLEEAFEFTAGKFFDGD 578
           P GW  W+G+F + T +Y E+ N GPGA  + RV W G   I    +A  FT  K   G 
Sbjct: 242 PAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGG 301

Query: 579 DWIKPRGVPYVSGF 592
            W++  GV YV G 
Sbjct: 302 SWLRSTGVAYVDGL 315
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query595
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.96
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.96
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.95
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.57
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.38
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.4
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.96
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.8
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.29
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.07
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 96.74
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 96.69
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 96.68
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 96.66
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 96.65
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.59
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.53
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.43
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.4
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 96.37
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 96.23
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.21
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 96.19
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.17
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 96.16
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.13
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.13
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.69
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.6
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.6
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.2
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.06
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 94.96
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 94.84
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 94.84
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 93.1
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 92.71
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 91.62
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 83.46
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 81.98
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=2.1e-98  Score=781.99  Aligned_cols=316  Identities=45%  Similarity=0.845  Sum_probs=304.4

Q ss_pred             CCcEEEcCCCCCCcccHHHHHhhCcCCCCceEEEEEecceeEeEEEEeeecceEEEEecCCCCeEEeCCccccCCCCCcc
Q 039111          279 KPDVVVAKDGSGNCTTINEALNFIPKKSNKTTTIYIKEGIYQEKVYLNRSMARVFMIGDGMYKTRITGNLNYVDGTPTMH  358 (595)
Q Consensus       279 ~~~~~Va~dgsg~f~TI~~Ai~a~p~~~~~~~~I~I~~G~Y~E~v~i~~~~~~itl~G~g~~~tiI~~~~~~~~g~~t~~  358 (595)
                      +++++|++||+|+|+|||+||+++|+++++|++|+|+||+|+|+|.|++.|+||||+|+|+++|+|+++.+..+|.+|++
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~   81 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFR   81 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGG
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccc
Confidence            57899999999999999999999999999999999999999999999998999999999999999999998889999999


Q ss_pred             ceEEEEecccEEEEEEEEecCCCCCcCceeEEEecCCceEEEEeEEEeecceeeecCceeEeeccEEecccceeeCCcce
Q 039111          359 TATVSVLGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDGSA  438 (595)
Q Consensus       359 sat~~v~~~~f~~~~itf~Nt~g~~~~qAvAl~v~~d~~~f~~C~~~g~QDTLy~~~~rq~y~~C~I~GtvDfIfG~a~a  438 (595)
                      ++||.|.+++|+++||||+|++|+.++|||||++.+|+++||||+|+|||||||+|++||||++|+|+|+||||||++++
T Consensus        82 satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~a  161 (317)
T 1xg2_A           82 SATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAV  161 (317)
T ss_dssp             GCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCEE
T ss_pred             eeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeEEEEecCCCCcceEEEecCCCCCCCCeeEEEEccEEeecCCCcccccccceeecCCCCCcceEEEEecccCCccC
Q 039111          439 FFQNCKIIVRKPLDNQHCIVTAQGRNVTHQPTAIVIQNSSIIADHVYWPVRNKIKSYLGRPWRIHSRTVIMETFIDDLIQ  518 (595)
Q Consensus       439 vfq~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~v~~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~s~~~~~I~  518 (595)
                      +||+|+|++++|+.++.++||||||+++++++||||+||+|++++++.++....++||||||++|||||||+|+|+++|+
T Consensus       162 vf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I~  241 (317)
T 1xg2_A          162 VFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLIN  241 (317)
T ss_dssp             EEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECTTBC
T ss_pred             EEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCCccc
Confidence            99999999999988889999999999999999999999999999987665556789999999999999999999999999


Q ss_pred             CCCCCCCCCCCCccccEEEEecccCCCCCCCCcccccCccCCCcHHHHccccccceecCCCCCCCCCCcccCCCCC
Q 039111          519 PQGWLPWEGEFGIHTCFYAEYGNYGPGANKTGRVTWQGVKSIDRLEEAFEFTAGKFFDGDDWIKPRGVPYVSGFVT  594 (595)
Q Consensus       519 p~Gw~~w~~~~~~~t~~~~Ey~n~Gpga~~~~Rv~w~g~~~l~~~~~a~~~t~~~f~~g~~W~~~~~vp~~~gl~~  594 (595)
                      |+||.+|+++++++|++|+||+|+|||+++++||+|+++|+|++.+||.+||+++||+|+.|+|.+||||.+||..
T Consensus       242 p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~~~  317 (317)
T 1xg2_A          242 PAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGLYD  317 (317)
T ss_dssp             TTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSSCC
T ss_pred             ccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCccccccccC
Confidence            9999999999999999999999999999999999999998886548999999999999999999999999999863
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 595
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-139
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 1e-89
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 8e-33
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 7e-25
d1ru4a_400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 1e-05
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  406 bits (1045), Expect = e-139
 Identities = 143/318 (44%), Positives = 200/318 (62%)

Query: 274 DQAQFKPDVVVAKDGSGNCTTINEALNFIPKKSNKTTTIYIKEGIYQEKVYLNRSMARVF 333
           + +   P+VVVA DGSG+  T++EA+   P+ S     I IK G+Y+E V + +    + 
Sbjct: 1   ESSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIM 60

Query: 334 MIGDGMYKTRITGNLNYVDGTPTMHTATVSVLGEFFMAKNIGFENSAGPEKHQAVALRVD 393
            +GDG   T IT + N  DG+ T ++ATV+ +G  F+A++I F+N+AG  KHQAVALRV 
Sbjct: 61  FLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVG 120

Query: 394 ADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDGSAFFQNCKIIVRKPLDN 453
           +D+S FY C +  YQD+LY H+ RQ++ +C I GT+DFIFG+ +   Q+C I  R+P   
Sbjct: 121 SDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSG 180

Query: 454 QHCIVTAQGRNVTHQPTAIVIQNSSIIADHVYWPVRNKIKSYLGRPWRIHSRTVIMETFI 513
           Q  +VTAQGR   +Q T IVIQ S I A     PV++   +YLGRPW+ +SRTV+M++ I
Sbjct: 181 QKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSI 240

Query: 514 DDLIQPQGWLPWEGEFGIHTCFYAEYGNYGPGANKTGRVTWQGVKSIDRLEEAFEFTAGK 573
            ++I P GW PW+G F + T +Y EY N G GA  +GRVTW+G K I    EA  FT G 
Sbjct: 241 TNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGS 300

Query: 574 FFDGDDWIKPRGVPYVSG 591
           F  G  W+K    P+  G
Sbjct: 301 FIAGGSWLKATTFPFSLG 318
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query595
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.94
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.94
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.85
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.58
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.63
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 96.47
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.42
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.03
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.02
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 95.55
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.54
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.45
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.27
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.02
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.32
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.08
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 93.52
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 91.63
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 91.54
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 89.89
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 84.82
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=9.9e-101  Score=794.59  Aligned_cols=315  Identities=45%  Similarity=0.829  Sum_probs=305.2

Q ss_pred             CCCCcEEEcCCCCCCcccHHHHHhhCcCCCCceEEEEEecceeEeEEEEeeecceEEEEecCCCCeEEeCCccccCCCCC
Q 039111          277 QFKPDVVVAKDGSGNCTTINEALNFIPKKSNKTTTIYIKEGIYQEKVYLNRSMARVFMIGDGMYKTRITGNLNYVDGTPT  356 (595)
Q Consensus       277 ~~~~~~~Va~dgsg~f~TI~~Ai~a~p~~~~~~~~I~I~~G~Y~E~v~i~~~~~~itl~G~g~~~tiI~~~~~~~~g~~t  356 (595)
                      .++|+++|++||+|+|+|||+||+++|.++++|++|+|+||+|+|+|.|+++|+||+|+|+|++.|+|+++.+..+|.+|
T Consensus         4 ~~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t   83 (319)
T d1gq8a_           4 TVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTT   83 (319)
T ss_dssp             SSCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCT
T ss_pred             cCCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCcc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             ccceEEEEecccEEEEEEEEecCCCCCcCceeEEEecCCceEEEEeEEEeecceeeecCceeEeeccEEecccceeeCCc
Q 039111          357 MHTATVSVLGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDG  436 (595)
Q Consensus       357 ~~sat~~v~~~~f~~~~itf~Nt~g~~~~qAvAl~v~~d~~~f~~C~~~g~QDTLy~~~~rq~y~~C~I~GtvDfIfG~a  436 (595)
                      +.++||.|.+++|+++||+|+|++|+.++|||||++.+|+++||+|+|+|||||||++++||||++|+|+|+||||||++
T Consensus        84 ~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~~  163 (319)
T d1gq8a_          84 FNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNA  163 (319)
T ss_dssp             GGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEESC
T ss_pred             ccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeeEEEEecCCCCcceEEEecCCCCCCCCeeEEEEccEEeecCCCcccccccceeecCCCCCcceEEEEecccCCc
Q 039111          437 SAFFQNCKIIVRKPLDNQHCIVTAQGRNVTHQPTAIVIQNSSIIADHVYWPVRNKIKSYLGRPWRIHSRTVIMETFIDDL  516 (595)
Q Consensus       437 ~avfq~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~v~~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~s~~~~~  516 (595)
                      +++||+|+|+++++..++.++||||+|+++.+++||||++|+|++++++.++....++||||||++|+||||++|+|+++
T Consensus       164 ~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~~~  243 (319)
T d1gq8a_         164 AVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNV  243 (319)
T ss_dssp             EEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECTT
T ss_pred             eeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecccccc
Confidence            99999999999998888899999999999999999999999999999887766678899999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCccccEEEEecccCCCCCCCCcccccCcc-CCCcHHHHccccccceecCCCCCCCCCCcccCCC
Q 039111          517 IQPQGWLPWEGEFGIHTCFYAEYGNYGPGANKTGRVTWQGVK-SIDRLEEAFEFTAGKFFDGDDWIKPRGVPYVSGF  592 (595)
Q Consensus       517 I~p~Gw~~w~~~~~~~t~~~~Ey~n~Gpga~~~~Rv~w~g~~-~l~~~~~a~~~t~~~f~~g~~W~~~~~vp~~~gl  592 (595)
                      |+|+||.+|++.+..+|++|+||+|+|||+++++||+|++++ +|++ +||.+||+++||+|+.|||.+||||.+||
T Consensus       244 I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~-~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         244 INPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSS-TEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             BCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCH-HHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             cccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCH-HHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            999999999998999999999999999999999999999986 4676 99999999999999999999999999997
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure