BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039112
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 123/434 (28%), Positives = 211/434 (48%), Gaps = 34/434 (7%)
Query: 38 GDTLYLSNLDDIIGARVFTPTIYFYRXXXXXXXXXXXXRPVFEILRQALADILVPYYPLS 97
G L+ SN+D ++ TP++YFYR ++L+ AL+ LVP+YP++
Sbjct: 21 GRNLWNSNVDLVV-PNFHTPSVYFYRPTGSSNFFDA------KVLKDALSRALVPFYPMA 73
Query: 98 ARLRENHNGKLEVFFGPDQGALMVEARSETVLAELGDLAVPNPAWAPLIYKFPNEEPYKI 157
RL+ + +G++E+ +G L VEA S+ V+ + GD A P LI + I
Sbjct: 74 GRLKRDEDGRIEIECN-GEGVLFVEAESDGVVDDFGDFA-PTLELRRLIPAVDYSQ--GI 129
Query: 158 LDMPLVIAQVTVFSCGGFSLGLRLCHCICDGFGAMQFLSAWAATAKAGRLVVNPQPCWER 217
L++ QVT F CGG SLG+ + H DGF + F+++W+ A+ L V P +R
Sbjct: 130 SSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARG--LDVTLPPFIDR 187
Query: 218 EFFRPRXXXXXXXXXXEY-----MRIDEGSNLTMTLWQAKPIQKCYRISRKFQAHLKNLA 272
R R EY +++ + + ++ + ++++R+ + LK +
Sbjct: 188 TLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSVPETA--VSIFKLTREQISALKAKS 245
Query: 273 QPDDN-FPCTSFDAMAAHIWRSWVRAIDVQPPNYKLRLTFSVNARQKLKNPPLKDGFYGN 331
+ D N +S++ +A H+WR +A ++ + +L + + R +L+ P L G++GN
Sbjct: 246 KEDGNTISYSSYEMLAGHVWRCACKARGLE-VDQGTKLYIATDGRARLR-PSLPPGYFGN 303
Query: 332 VVCVACAMSSVNELVNGQLKYTTRLVREARLGVSEDYLRSTVDFVEVERPRRLEFGG--- 388
V+ A ++ +L + Y + +A + DYLRS +D++E++ + G
Sbjct: 304 VIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHT 363
Query: 389 ----KLTITQWTRFSIYESADFGWGRPIYAGPIDLTPTPQVCVFLPEGEADPNGNMVVCI 444
L IT W R I++ ADFGWGRPI+ GP + + LP D G+M V I
Sbjct: 364 FKCPNLGITSWVRLPIHD-ADFGWGRPIFMGPGGIA-YEGLSFILPSPTND--GSMSVAI 419
Query: 445 CLPESATEKFIEFL 458
L + F FL
Sbjct: 420 SLQGEHMKLFQSFL 433
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 164 bits (416), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 123/432 (28%), Positives = 206/432 (47%), Gaps = 30/432 (6%)
Query: 38 GDTLYLSNLDDIIGARVFTPTIYFYRXXXXXXXXXXXXRPVFEILRQALADILVPYYPLS 97
G L+ SN+D ++ TP++YFYR ++L+ AL+ LVP+YP++
Sbjct: 24 GRNLWNSNVDLVV-PNFHTPSVYFYRPTGSSNFFDA------KVLKDALSRALVPFYPMA 76
Query: 98 ARLRENHNGKLEVFFGPDQGALMVEARSETVLAELGDLAVPNPAWAPLIYKFPNEEPYKI 157
RL+ + +G++E+ +G L VEA S+ V+ + GD A P LI + I
Sbjct: 77 GRLKRDEDGRIEIECN-GEGVLFVEAESDGVVDDFGDFA-PTLELRRLIPAVDYSQ--GI 132
Query: 158 LDMPLVIAQVTVFSCGGFSLGLRLCHCICDGFGAMQFLSAWAATAKAGRLVVNPQPCWER 217
L++ QVT F CGG SLG+ + H DGF + F+++W+ A+ L V P +R
Sbjct: 133 SSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARG--LDVTLPPFIDR 190
Query: 218 EFFRPRXXXXXXXXXXEYM---RIDEGSNLTMTLWQAKPIQKCYRISRKFQAHLKNLAQP 274
R R EY + + + ++++R+ + LK ++
Sbjct: 191 TLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKSKE 250
Query: 275 DDN-FPCTSFDAMAAHIWRSWVRAIDVQPPNYKLRLTFSVNARQKLKNPPLKDGFYGNVV 333
D N +S++ +A H+WR +A ++ + +L + + R +L+ P L G++GNV+
Sbjct: 251 DGNTISYSSYEMLAGHVWRCACKARGLE-VDQGTKLYIATDGRARLR-PSLPPGYFGNVI 308
Query: 334 CVACAMSSVNELVNGQLKYTTRLVREARLGVSEDYLRSTVDFVEVERPRRLEFGG----- 388
A ++ +L + Y + +A + DYLRS +D++E++ + G
Sbjct: 309 FTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFK 368
Query: 389 --KLTITQWTRFSIYESADFGWGRPIYAGPIDLTPTPQVCVFLPEGEADPNGNMVVCICL 446
L IT W R I++ ADFGWGRPI+ GP + + LP D G+M V I L
Sbjct: 369 XPNLGITSWVRLPIHD-ADFGWGRPIFMGPGGIA-YEGLSFILPSPTND--GSMSVAISL 424
Query: 447 PESATEKFIEFL 458
+ F FL
Sbjct: 425 QGEHMKLFQSFL 436
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 122/432 (28%), Positives = 205/432 (47%), Gaps = 30/432 (6%)
Query: 38 GDTLYLSNLDDIIGARVFTPTIYFYRXXXXXXXXXXXXRPVFEILRQALADILVPYYPLS 97
G L+ SN+D ++ TP++YFYR ++L+ AL+ LVP+YP++
Sbjct: 24 GRNLWNSNVDLVV-PNFHTPSVYFYRPTGSSNFFDA------KVLKDALSRALVPFYPMA 76
Query: 98 ARLRENHNGKLEVFFGPDQGALMVEARSETVLAELGDLAVPNPAWAPLIYKFPNEEPYKI 157
RL+ + +G++E+ +G L VEA S+ V+ + GD A P LI + I
Sbjct: 77 GRLKRDEDGRIEIECN-GEGVLFVEAESDGVVDDFGDFA-PTLELRRLIPAVDYSQ--GI 132
Query: 158 LDMPLVIAQVTVFSCGGFSLGLRLCHCICDGFGAMQFLSAWAATAKAGRLVVNPQPCWER 217
L++ QVT F GG SLG+ + H DGF + F+++W+ A+ L V P +R
Sbjct: 133 SSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMARG--LDVTLPPFIDR 190
Query: 218 EFFRPRXXXXXXXXXXEYM---RIDEGSNLTMTLWQAKPIQKCYRISRKFQAHLKNLAQP 274
R R EY + + + ++++R+ + LK ++
Sbjct: 191 TLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKSKE 250
Query: 275 DDN-FPCTSFDAMAAHIWRSWVRAIDVQPPNYKLRLTFSVNARQKLKNPPLKDGFYGNVV 333
D N +S++ +A H+WR +A ++ + +L + + R +L+ P L G++GNV+
Sbjct: 251 DGNTISYSSYEMLAGHVWRCACKARGLE-VDQGTKLYIATDGRARLR-PSLPPGYFGNVI 308
Query: 334 CVACAMSSVNELVNGQLKYTTRLVREARLGVSEDYLRSTVDFVEVERPRRLEFGG----- 388
A ++ +L + Y + +A + DYLRS +D++E++ + G
Sbjct: 309 FTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFK 368
Query: 389 --KLTITQWTRFSIYESADFGWGRPIYAGPIDLTPTPQVCVFLPEGEADPNGNMVVCICL 446
L IT W R I++ ADFGWGRPI+ GP + + LP D G+M V I L
Sbjct: 369 XPNLGITSWVRLPIHD-ADFGWGRPIFMGPGGIA-YEGLSFILPSPTND--GSMSVAISL 424
Query: 447 PESATEKFIEFL 458
+ F FL
Sbjct: 425 QGEHMKLFQSFL 436
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 147/350 (42%), Gaps = 58/350 (16%)
Query: 82 LRQALADILVPYYPLSARLRENHNGKLEVFFGPDQGALMVEARSETVLA-------ELGD 134
L+Q+L+ +L +YPL+ R+ N + D G VEAR + L+ EL
Sbjct: 63 LKQSLSKVLTHFYPLAGRINVNSSVDCN-----DSGVPFVEARVQAQLSQAIQNVVELEK 117
Query: 135 LAVPNPAWAPLIYKFPNEEPYKILDMPLVIAQVTVFSCGGFSLGLRLCHCICDGFGAMQF 194
L P+ A +P + D+PL + +++ F CGG ++G+ L H I D F
Sbjct: 118 LDQYLPSAA-----YPGGKIEVNEDVPLAV-KISFFECGGTAIGVNLSHKIADVLSLATF 171
Query: 195 LSAWAATAKAGRLVVNPQPCWEREFFRPRXXXXXXXXXXEYMRIDEGSNLTMTLWQAKPI 254
L+AW AT + +V P F P + DE + ++ + I
Sbjct: 172 LNAWTATCRGETEIVLPNFDLAARHFPP-----VDNTPSPELVPDENVVMKRFVFDKEKI 226
Query: 255 QKCYRISRKFQAHLKNLAQPDDNFPCTSFDAMAAHIWRSWVRAIDVQPPNYKLRLTF--- 311
+ + QA + A + NF + + A+IW+ IDV Y + F
Sbjct: 227 G-----ALRAQA---SSASEEKNF--SRVQLVVAYIWK---HVIDVTRAKYGAKNKFVVV 273
Query: 312 -SVNARQKLKNPPLKDGFYGNVVCVACAMSSVN------ELVNGQLKYTTRLVREARLGV 364
+VN R ++ NPPL GN+ + A +L+ G L+ + +
Sbjct: 274 QAVNLRSRM-NPPLPHYAMGNIATLLFAAVDAEWDKDFPDLI-GPLRTSLEKTEDDH--- 328
Query: 365 SEDYLRSTVDFVEVERPRRLEFGGKLTITQWTRFSIYESADFGWGRPIYA 414
+ + L+ E+E P+ L L+ T W R Y+ DFGWG+P+ A
Sbjct: 329 NHELLKGMTCLYELE-PQEL-----LSFTSWCRLGFYD-LDFGWGKPLSA 371
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 136/322 (42%), Gaps = 41/322 (12%)
Query: 158 LDMPLVIAQVTVFSCGGFSLGLRLCHCICDGFGAMQFLSAWAATAKAGR-----LVVNPQ 212
+ +PL QVT+F G ++G+ HC+ D FL AW + A++G L +
Sbjct: 145 IKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTR 204
Query: 213 PCWEREFFRPRXXXXXXXXXXEYMRIDEGSNLTMTLWQAKPIQK---CYRISRKFQAHLK 269
P ++R P + +++ + +T A P K + ++R LK
Sbjct: 205 PLYDRIIKYP----MLDEAYLKRAKVESFNEDYVTQSLAGPSDKLRATFILTRAVINQLK 260
Query: 270 N--LAQPDDNFPCTSFDAMAAHIWRSWVRAIDVQPPNYKLRL-TFSVNARQKLKNPPLKD 326
+ LAQ +SF A+IW ++ N KL+L F ++ R ++K PP+
Sbjct: 261 DRVLAQLPTLEYVSSFTVACAYIWSCIAKS-----RNDKLQLFGFPIDRRARMK-PPIPT 314
Query: 327 GFYGNVVCVACAMSSVNELVNGQLKYTT----------RLVREARLGVSEDYLRSTVDFV 376
++GN V A++ N L+ G+ + T + + + + GV +D + S D V
Sbjct: 315 AYFGNCVGGCAAIAKTNLLI-GKEGFITAAKLIGENLHKTLTDYKDGVLKDDMESFNDLV 373
Query: 377 EVERPRRLEFGGKLTITQWTRFSIYESADFGWGRPIYAGPIDLTPTPQVCVFLPEGEADP 436
P + + ++ + Y+ DFGWG+P + + + + +
Sbjct: 374 SEGMPTTMTW-----VSGTPKLRFYD-MDFGWGKPKKLETVSIDHNGAISI---NSCKES 424
Query: 437 NGNMVVCICLPESATEKFIEFL 458
N ++ + +C+ + E F+
Sbjct: 425 NEDLEIGVCISATQMEDFVHIF 446
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 132/318 (41%), Gaps = 33/318 (10%)
Query: 158 LDMPLVIAQVTVFSCGGFSLGLRLCHCICDGFGAMQFLSAWAATAKAGR-----LVVNPQ 212
+ +PL QVT+F G ++G+ HC+ D FL AW + A++G L +
Sbjct: 145 IKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTR 204
Query: 213 PCWEREFFRPRXXXXXXXXXXEYMRIDEGSNLTMTLWQAKPIQK---CYRISRKFQAHLK 269
P ++R P + +++ + +T A P K + ++R LK
Sbjct: 205 PLYDRIIKYPX----LDEAYLKRAKVESFNEDYVTQSLAGPSDKLRATFILTRAVINQLK 260
Query: 270 N--LAQPDDNFPCTSFDAMAAHIWRSWVRAIDVQPPNYKLRL-TFSVNARQKLKNPPLKD 326
+ LAQ +SF A+IW ++ N KL+L F ++ R + K PP+
Sbjct: 261 DRVLAQLPTLEYVSSFTVACAYIWSCIAKS-----RNDKLQLFGFPIDRRARXK-PPIPT 314
Query: 327 GFYGNVVCVACAMSSVNELVNGQLKYTT--RLVREARLGVSEDYLRSTVDFVEVERPRRL 384
++GN V A++ N L+ G+ + T +L+ E DY + V + E L
Sbjct: 315 AYFGNCVGGCAAIAKTNLLI-GKEGFITAAKLIGENLHKTLTDY-KDGVLKDDXESFNDL 372
Query: 385 EFGGKLTITQWT----RFSIYESADFGWGRPIYAGPIDLTPTPQVCVFLPEGEADPNGNM 440
G T W + Y+ DFGWG+P + + + + + N ++
Sbjct: 373 VSEGXPTTXTWVSGTPKLRFYD-XDFGWGKPKKLETVSIDHNGAISI---NSCKESNEDL 428
Query: 441 VVCICLPESATEKFIEFL 458
+ +C+ + E F+
Sbjct: 429 EIGVCISATQXEDFVHIF 446
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 111/268 (41%), Gaps = 27/268 (10%)
Query: 161 PLVIAQVTVFSCGGFSLGLRLCHCICDGFGAMQFLSAWAATAKAG---RLVVNP-QPCWE 216
P++ QVT+F G S+G H DG ++F+ AWA K G + + N P ++
Sbjct: 143 PVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYD 202
Query: 217 REFFRPRXXXXXXXXXXEYMRIDEGSNLTMTLWQAKPIQKCYRISRKFQAHLKNLA---Q 273
R + E + + + ++ + I+R LKNL +
Sbjct: 203 RSVIK-DPNGVGXSIWNEXKKYKHXXKXSDVVTPPDKVRGTFIITRHDIGKLKNLVLTRR 261
Query: 274 PDDNFPCTSFDAMAAHIWRSWVRA-------IDVQPPNYKLRLTFSVNARQKLKNPPLKD 326
P TSF A++W +++ ID + + + R + NPPL
Sbjct: 262 PKLTH-VTSFTVTCAYVWTCIIKSEAATGEEIDENGXEF---FGCAADCRAQF-NPPLPP 316
Query: 327 GFYGNVVCVACAMSSVNELVNGQ-LKYTTRLVREA--RLGVSEDYLRSTVDFVEVERPRR 383
++GN + A + +L + L+ EA + E+++ S F E ++
Sbjct: 317 SYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRXKDEEWILSGSWFKEYDK--- 373
Query: 384 LEFGGKLTITQWTRFSIYESADFGWGRP 411
++ L++ + +Y +ADFGWGRP
Sbjct: 374 VDAKRSLSVAGSPKLDLY-AADFGWGRP 400
>pdb|2Y3H|A Chain A, E63q Mutant Of Cupriavidus Metallidurans Ch34 Cnrxs
pdb|2Y3H|B Chain B, E63q Mutant Of Cupriavidus Metallidurans Ch34 Cnrxs
pdb|2Y3H|C Chain C, E63q Mutant Of Cupriavidus Metallidurans Ch34 Cnrxs
pdb|2Y3H|D Chain D, E63q Mutant Of Cupriavidus Metallidurans Ch34 Cnrxs
Length = 118
Score = 28.9 bits (63), Expect = 5.9, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 86 LADILVPYYPLSARLRENHNGKLEVFFGPDQGALMVEARSETVLAELGDLAVPNPAWAP 144
L +IL PL A RE K + F Q +E R +L D NPAW+P
Sbjct: 11 LHEILHEAVPLDANEREILELKQDAF---AQRRREIETRLRAANGKLADAIAKNPAWSP 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,819,267
Number of Sequences: 62578
Number of extensions: 555514
Number of successful extensions: 1129
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1094
Number of HSP's gapped (non-prelim): 13
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)