BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039114
         (632 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4A37|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa
 pdb|4A37|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa
 pdb|4A38|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aureginosa In
           Complex With L-Benzylsuccinic Acid
 pdb|4A38|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aureginosa In
           Complex With L-Benzylsuccinic Acid
 pdb|4A39|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa In
           Complex With  (2-Guanidinoethylmercapto)succinic Acid
 pdb|4A39|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa In
           Complex With  (2-Guanidinoethylmercapto)succinic Acid
          Length = 388

 Score = 29.6 bits (65), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 465 PDDTQVKDSLRDAVLRLIKRINPDLFVHG 493
           PDDT+++  L  A L L+  +NPD   HG
Sbjct: 200 PDDTEMQRLLEKADLYLVPNMNPDGAFHG 228


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,032,035
Number of Sequences: 62578
Number of extensions: 716020
Number of successful extensions: 1393
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1392
Number of HSP's gapped (non-prelim): 2
length of query: 632
length of database: 14,973,337
effective HSP length: 105
effective length of query: 527
effective length of database: 8,402,647
effective search space: 4428194969
effective search space used: 4428194969
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)