Query 039114
Match_columns 632
No_of_seqs 257 out of 707
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 06:25:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 3E-112 7E-117 910.1 40.2 370 254-625 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.1 0.037 8E-07 56.7 17.8 190 336-577 34-225 (247)
3 TIGR02752 MenG_heptapren 2-hep 96.0 0.58 1.3E-05 46.7 17.9 118 350-497 35-153 (231)
4 TIGR00740 methyltransferase, p 95.8 0.32 6.9E-06 49.2 15.3 105 360-492 53-158 (239)
5 PLN02233 ubiquinone biosynthes 94.6 2.9 6.3E-05 43.4 18.4 106 359-490 72-177 (261)
6 PRK14103 trans-aconitate 2-met 94.3 1.3 2.8E-05 45.4 14.7 114 351-502 20-133 (255)
7 PRK06202 hypothetical protein; 94.1 0.89 1.9E-05 45.8 13.0 144 322-493 22-165 (232)
8 TIGR02716 C20_methyl_CrtF C-20 93.9 0.87 1.9E-05 48.0 13.0 114 349-495 138-255 (306)
9 TIGR01934 MenG_MenH_UbiE ubiqu 92.8 10 0.00022 37.0 18.8 112 350-492 29-140 (223)
10 COG2226 UbiE Methylase involve 92.0 9 0.00019 39.9 16.8 158 334-527 24-186 (238)
11 PF13847 Methyltransf_31: Meth 90.7 1.3 2.7E-05 41.6 8.4 104 360-492 3-107 (152)
12 PF13489 Methyltransf_23: Meth 90.4 2.2 4.8E-05 39.3 9.6 97 358-497 20-118 (161)
13 PRK08317 hypothetical protein; 88.4 26 0.00057 34.2 16.8 111 352-492 11-121 (241)
14 PF01209 Ubie_methyltran: ubiE 87.0 3.8 8.2E-05 42.1 9.5 111 351-490 38-148 (233)
15 PTZ00098 phosphoethanolamine N 86.1 27 0.00059 36.3 15.4 114 347-492 39-153 (263)
16 PF13649 Methyltransf_25: Meth 86.1 1.9 4E-05 37.6 5.8 97 364-487 1-99 (101)
17 PRK00216 ubiE ubiquinone/menaq 86.0 37 0.00081 33.4 16.2 111 353-492 44-155 (239)
18 PRK01683 trans-aconitate 2-met 85.7 28 0.00061 35.4 15.0 111 349-495 20-130 (258)
19 COG2227 UbiG 2-polyprenyl-3-me 82.1 3.7 8E-05 42.9 6.8 100 360-492 59-158 (243)
20 PLN02396 hexaprenyldihydroxybe 81.9 33 0.00071 37.2 14.2 98 361-492 132-232 (322)
21 TIGR00477 tehB tellurite resis 81.8 11 0.00023 37.3 9.8 111 347-490 17-128 (195)
22 PLN02336 phosphoethanolamine N 81.4 38 0.00082 37.9 15.1 112 349-492 255-366 (475)
23 smart00138 MeTrc Methyltransfe 81.3 3.3 7.1E-05 43.3 6.2 43 358-400 97-141 (264)
24 PF08241 Methyltransf_11: Meth 81.3 5.7 0.00012 32.9 6.6 92 365-491 1-93 (95)
25 PRK11207 tellurite resistance 80.7 18 0.00038 35.9 10.9 110 349-491 19-130 (197)
26 PRK12335 tellurite resistance 79.4 16 0.00036 38.2 10.7 96 363-491 123-219 (287)
27 PF09243 Rsm22: Mitochondrial 77.9 13 0.00028 39.2 9.3 139 343-512 12-156 (274)
28 PLN02244 tocopherol O-methyltr 77.0 26 0.00056 37.9 11.6 99 360-491 118-219 (340)
29 PRK11036 putative S-adenosyl-L 75.9 44 0.00095 34.2 12.4 111 351-492 36-146 (255)
30 PRK05785 hypothetical protein; 75.4 38 0.00082 34.5 11.7 92 361-492 52-144 (226)
31 PF12847 Methyltransf_18: Meth 74.8 9 0.0002 33.3 6.2 103 363-492 4-108 (112)
32 PLN02336 phosphoethanolamine N 73.9 42 0.00091 37.6 12.7 113 350-493 27-140 (475)
33 PF00891 Methyltransf_2: O-met 72.9 30 0.00065 35.0 10.3 44 350-400 90-133 (241)
34 TIGR02072 BioC biotin biosynth 72.3 1E+02 0.0022 30.2 15.7 99 360-493 34-133 (240)
35 TIGR03438 probable methyltrans 71.8 46 0.001 35.3 11.8 109 362-493 65-176 (301)
36 PLN02585 magnesium protoporphy 69.9 32 0.00069 37.2 10.1 103 360-493 144-248 (315)
37 TIGR03439 methyl_EasF probable 69.0 47 0.001 36.1 11.2 150 351-521 69-234 (319)
38 PRK05134 bifunctional 3-demeth 67.8 1.4E+02 0.0029 29.9 15.7 102 358-492 46-148 (233)
39 PF02353 CMAS: Mycolic acid cy 67.7 31 0.00066 36.5 9.3 110 350-491 52-162 (273)
40 PRK10258 biotin biosynthesis p 65.4 1.6E+02 0.0035 29.8 14.5 43 348-399 30-72 (251)
41 COG2230 Cfa Cyclopropane fatty 64.4 74 0.0016 34.2 11.3 116 348-495 60-178 (283)
42 PRK15068 tRNA mo(5)U34 methylt 63.4 2.2E+02 0.0048 30.7 15.3 140 322-492 71-223 (322)
43 TIGR02081 metW methionine bios 62.5 95 0.0021 30.4 11.1 39 351-399 6-44 (194)
44 TIGR03587 Pse_Me-ase pseudamin 60.5 82 0.0018 31.6 10.4 99 363-496 46-144 (204)
45 TIGR02021 BchM-ChlM magnesium 59.7 80 0.0017 31.4 10.2 58 345-417 38-97 (219)
46 TIGR00138 gidB 16S rRNA methyl 58.7 86 0.0019 30.8 10.0 97 361-494 43-141 (181)
47 PF03291 Pox_MCEL: mRNA cappin 58.2 65 0.0014 35.1 9.9 136 343-497 41-189 (331)
48 PLN02490 MPBQ/MSBQ methyltrans 56.7 1.8E+02 0.004 31.9 13.0 99 360-492 113-212 (340)
49 PF03848 TehB: Tellurite resis 53.2 2.2E+02 0.0048 28.8 12.0 110 350-492 20-130 (192)
50 PRK00274 ksgA 16S ribosomal RN 52.7 47 0.001 34.7 7.5 56 336-400 13-73 (272)
51 PRK15001 SAM-dependent 23S rib 51.2 1.3E+02 0.0029 33.4 11.0 110 363-496 231-341 (378)
52 TIGR00091 tRNA (guanine-N(7)-) 47.1 86 0.0019 30.9 8.0 31 362-399 18-48 (194)
53 PRK11873 arsM arsenite S-adeno 46.3 2E+02 0.0044 29.5 10.9 98 362-491 79-179 (272)
54 TIGR00452 methyltransferase, p 46.2 1.9E+02 0.0041 31.4 11.0 41 351-399 112-152 (314)
55 PRK07580 Mg-protoporphyrin IX 45.7 1E+02 0.0023 30.4 8.4 99 360-493 63-163 (230)
56 COG4106 Tam Trans-aconitate me 45.4 50 0.0011 34.6 6.0 111 356-503 26-137 (257)
57 PRK11705 cyclopropane fatty ac 44.1 1.9E+02 0.0042 32.0 10.9 106 351-492 158-264 (383)
58 PRK09489 rsmC 16S ribosomal RN 44.0 3.4E+02 0.0073 29.7 12.6 105 363-496 199-304 (342)
59 PRK00107 gidB 16S rRNA methylt 41.0 3.8E+02 0.0081 26.7 12.0 97 361-494 46-144 (187)
60 PRK10909 rsmD 16S rRNA m(2)G96 40.5 2.8E+02 0.0061 27.9 10.6 106 362-499 55-163 (199)
61 PF13679 Methyltransf_32: Meth 40.1 56 0.0012 30.6 5.2 39 357-400 22-62 (141)
62 smart00650 rADc Ribosomal RNA 37.7 1.6E+02 0.0034 28.2 8.0 41 351-400 4-44 (169)
63 PRK06922 hypothetical protein; 37.5 2.1E+02 0.0045 34.5 10.2 108 362-491 420-533 (677)
64 smart00828 PKS_MT Methyltransf 37.0 2E+02 0.0043 28.4 8.9 99 363-492 2-101 (224)
65 PF13552 DUF4127: Protein of u 36.5 70 0.0015 36.8 6.2 63 459-524 77-147 (497)
66 COG1341 Predicted GTPase or GT 32.8 2.6E+02 0.0057 31.5 9.6 157 343-547 89-254 (398)
67 PRK11088 rrmA 23S rRNA methylt 31.3 1.9E+02 0.0042 29.9 8.0 70 325-400 52-121 (272)
68 cd00635 PLPDE_III_YBL036c_like 31.1 2.6E+02 0.0056 28.1 8.7 70 360-433 117-197 (222)
69 COG0075 Serine-pyruvate aminot 29.8 1.8E+02 0.004 32.5 7.8 154 413-579 91-290 (383)
70 COG2242 CobL Precorrin-6B meth 29.7 65 0.0014 32.6 4.0 51 355-421 29-82 (187)
71 TIGR01716 RGG_Cterm transcript 29.0 1.1E+02 0.0024 30.2 5.5 55 254-308 127-182 (220)
72 PRK00121 trmB tRNA (guanine-N( 27.5 5.8E+02 0.013 25.2 10.4 34 360-400 40-73 (202)
73 TIGR02129 hisA_euk phosphoribo 27.4 72 0.0016 33.7 4.0 26 357-386 50-75 (253)
74 COG2942 N-acyl-D-glucosamine 2 26.1 5.5E+02 0.012 29.0 10.6 90 326-434 178-285 (388)
75 TIGR02469 CbiT precorrin-6Y C5 25.7 1.9E+02 0.0041 25.1 5.9 31 363-400 22-52 (124)
76 PF07522 DRMBL: DNA repair met 25.5 2.8E+02 0.006 25.0 7.0 36 450-495 72-107 (110)
77 PF02527 GidB: rRNA small subu 25.1 1.2E+02 0.0027 30.2 5.1 59 363-439 51-109 (184)
78 PRK01544 bifunctional N5-gluta 25.0 1E+03 0.022 27.4 13.1 44 361-417 139-182 (506)
79 PF11020 DUF2610: Domain of un 24.9 81 0.0017 27.9 3.1 21 409-429 49-69 (82)
80 PLN02446 (5-phosphoribosyl)-5- 24.2 86 0.0019 33.3 3.9 27 357-384 55-81 (262)
81 PTZ00338 dimethyladenosine tra 23.7 2.7E+02 0.0058 29.8 7.5 40 352-400 28-67 (294)
82 PRK14896 ksgA 16S ribosomal RN 23.0 3.3E+02 0.0071 28.2 7.9 32 360-400 29-60 (258)
83 smart00857 Resolvase Resolvase 22.4 5.9E+02 0.013 23.2 8.8 76 410-492 17-101 (148)
84 PF07521 RMMBL: RNA-metabolisi 22.4 2.1E+02 0.0045 21.8 4.7 37 451-492 1-37 (43)
85 COG0357 GidB Predicted S-adeno 22.3 2.2E+02 0.0048 29.3 6.3 62 361-441 68-130 (215)
86 cd05296 GH4_P_beta_glucosidase 22.2 7.1E+02 0.015 28.1 10.8 53 376-435 14-68 (419)
87 TIGR01983 UbiG ubiquinone bios 22.0 7.5E+02 0.016 24.2 13.4 99 361-492 46-146 (224)
88 TIGR03180 UraD_2 OHCU decarbox 21.8 3.2E+02 0.0069 26.7 7.1 100 323-432 5-115 (158)
89 cd05197 GH4_glycoside_hydrolas 21.8 7.8E+02 0.017 27.8 11.1 58 376-441 14-73 (425)
90 PRK03646 dadX alanine racemase 21.8 1.1E+02 0.0025 33.4 4.4 55 360-421 117-176 (355)
91 COG1500 Predicted exosome subu 21.8 2.5E+02 0.0055 29.4 6.5 60 532-594 92-152 (234)
92 TIGR00755 ksgA dimethyladenosi 21.6 6E+02 0.013 26.0 9.4 40 351-399 20-59 (253)
93 KOG1165 Casein kinase (serine/ 21.2 53 0.0011 36.5 1.6 14 357-370 163-176 (449)
94 TIGR03534 RF_mod_PrmC protein- 20.9 3.1E+02 0.0067 27.4 7.0 32 361-399 88-119 (251)
95 TIGR02085 meth_trns_rumB 23S r 20.8 1.1E+03 0.024 25.9 11.8 97 363-494 236-333 (374)
96 cd06815 PLPDE_III_AR_like_1 Ty 20.7 5.7E+02 0.012 27.7 9.5 34 360-397 117-155 (353)
97 KOG1270 Methyltransferases [Co 20.0 2E+02 0.0043 31.0 5.5 100 364-494 93-196 (282)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=3e-112 Score=910.09 Aligned_cols=370 Identities=42% Similarity=0.714 Sum_probs=357.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCC---hHHHHHH
Q 039114 254 LSSLLTQCAQAAASNDQRVAIELSKQIRQHSSPDGDGTQRLAHYFANGLEARLSGTRTPYFSPAFISKTS---VADVLKA 330 (632)
Q Consensus 254 L~~LLl~CAqAVa~~d~~~A~~lL~~I~q~sSp~Gd~~QRLA~yFaeAL~aRL~gtg~~~y~~l~s~~~s---~~~~lkA 330 (632)
|++||++||+||++||...|+.+|++|++++||+||++||||+||++||.+||.+++++.|..+.....+ ..+.+.|
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999877554443 6789999
Q ss_pred HHHHHhcCcchhhhHHHhhHHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHH
Q 039114 331 YIVYISASPFRKASNFLTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERV 410 (632)
Q Consensus 331 y~~f~~~~Pf~kfa~f~ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~l 410 (632)
|++|+++|||+||+|||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||+.|.++ +.+.+
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~--~~~~l 158 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG--SADEL 158 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC--cHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887 67899
Q ss_pred HHHHHHHHHHHHhCCCcEEEEee-cccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCE
Q 039114 411 EETGHRLKKAAERCNVPFEYSAI-AQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDL 489 (632)
Q Consensus 411 eeTGrRL~~fA~~~gVpFeF~~I-a~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~V 489 (632)
++||+||.+||+++||||||++| ..+||++++++|++++||+|||||+|+||||.+++....+||+.||+.||+|+|+|
T Consensus 159 ~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v 238 (374)
T PF03514_consen 159 QETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV 238 (374)
T ss_pred HHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence 99999999999999999999996 58999999999999999999999999999999998888889999999999999999
Q ss_pred EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhHhHhhhhhccCCCccCCccchhhHHHH
Q 039114 490 FVHGVANGTYNSPFFVSRFKEAMFHFSALFDMLEATVPTEDQGRLIYEREVFGRHAMNVLACEGLERIDNPETYRQWQSR 569 (632)
Q Consensus 490 fv~~e~n~~~nsp~F~~RF~EAL~yYsAlFDsLda~~pr~~~eR~~iEr~~~greI~NvVAcEG~eRvER~E~~~qWq~R 569 (632)
||++|++++||+|+|++||.|||+||+|+|||||+++|+++++|..+|+.+||++|+|||||||.+|+||||++++|+.|
T Consensus 239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r 318 (374)
T PF03514_consen 239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRR 318 (374)
T ss_pred EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCccccCCHHHHHHHHHHHhhcCCCCcEEEecCCEEEEEECCceeEEEeeee
Q 039114 570 NLRAGFRQLPVDQELLRRVKKMVKMDYHKDFDVDENGQWMLQGWKGKILYALSFWK 625 (632)
Q Consensus 570 ~~rAGF~~lpLs~~~~~qak~ll~~~y~~~f~v~ed~~~LlLgWKgr~L~a~SaW~ 625 (632)
|.+|||+++||++.++.|||.+|+.++++||.|+++++||+|||||+||+++|+||
T Consensus 319 ~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 319 MRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred HHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 99999999999999999999999976668999999999999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.06 E-value=0.037 Score=56.67 Aligned_cols=190 Identities=14% Similarity=0.174 Sum_probs=96.3
Q ss_pred hcCcchhhhHHHhhHHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHH
Q 039114 336 SASPFRKASNFLTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGH 415 (632)
Q Consensus 336 ~~~Pf~kfa~f~ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGr 415 (632)
...|.....|-.++..+-..+. ..-+|+|+|-|.|.--..|.+.+. .|..++||||.. .+.++.+.+
T Consensus 34 ~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~~~l~~~~~-----~~~~~v~gvD~S------~~ml~~A~~ 100 (247)
T PRK15451 34 RSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAATLSVRRNIH-----HDNCKIIAIDNS------PAMIERCRR 100 (247)
T ss_pred hcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHHHHHHHhcC-----CCCCeEEEEeCC------HHHHHHHHH
Confidence 4466666665555543322222 235799999999953333322221 256899999963 345666666
Q ss_pred HHHHHHHhCCCcEEEEeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCE-EEEE
Q 039114 416 RLKKAAERCNVPFEYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDL-FVHG 493 (632)
Q Consensus 416 RL~~fA~~~gVpFeF~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~V-fv~~ 493 (632)
++..+.. .-.++|. ...++++.. ....+++ |.+.||++.++ .+..+|+.| +.|+|.- ++++
T Consensus 101 ~~~~~~~--~~~v~~~--~~d~~~~~~-----~~~D~vv--~~~~l~~l~~~------~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 101 HIDAYKA--PTPVDVI--EGDIRDIAI-----ENASMVV--LNFTLQFLEPS------ERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred HHHhcCC--CCCeEEE--eCChhhCCC-----CCCCEEe--hhhHHHhCCHH------HHHHHHHHHHHhcCCCCEEEEE
Confidence 6544321 1134443 233333322 2223433 45778888643 245666666 6689984 4555
Q ss_pred eecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhHhHhhhhhccCCCccCCccchhhHHHHHHhC
Q 039114 494 VANGTYNSPFFVSRFKEAMFHFSALFDMLEATVPTEDQGRLIYEREVFGRHAMNVLACEGLERIDNPETYRQWQSRNLRA 573 (632)
Q Consensus 494 e~n~~~nsp~F~~RF~EAL~yYsAlFDsLda~~pr~~~eR~~iEr~~~greI~NvVAcEG~eRvER~E~~~qWq~R~~rA 573 (632)
+.-.. ..+.....+.+....|. .....+ ..-+++. .... +++-++++..+...++..|
T Consensus 164 e~~~~-~~~~~~~~~~~~~~~~~-----~~~g~s-----~~ei~~~--~~~~---------~~~~~~~~~~~~~~~L~~a 221 (247)
T PRK15451 164 EKFSF-EDAKVGELLFNMHHDFK-----RANGYS-----ELEISQK--RSML---------ENVMLTDSVETHKARLHKA 221 (247)
T ss_pred EecCC-CcchhHHHHHHHHHHHH-----HHcCCC-----HHHHHHH--HHHH---------HhhcccCCHHHHHHHHHHc
Confidence 53222 22222333333222221 111222 1112210 1112 2345577888899999999
Q ss_pred CCcc
Q 039114 574 GFRQ 577 (632)
Q Consensus 574 GF~~ 577 (632)
||+.
T Consensus 222 GF~~ 225 (247)
T PRK15451 222 GFEH 225 (247)
T ss_pred Cchh
Confidence 9985
No 3
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.98 E-value=0.58 Score=46.73 Aligned_cols=118 Identities=11% Similarity=0.107 Sum_probs=60.2
Q ss_pred HHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEE
Q 039114 350 RMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFE 429 (632)
Q Consensus 350 qaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFe 429 (632)
+.++..+.-...-+|+|+|-+.|. +...|+.+ .+|..++||||.. .+.++.+.+++. ..+++ .
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~----~~~~la~~--~~~~~~v~gvD~s------~~~~~~a~~~~~----~~~~~-~ 97 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTAD----WSIALAEA--VGPEGHVIGLDFS------ENMLSVGRQKVK----DAGLH-N 97 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCH----HHHHHHHH--hCCCCEEEEEECC------HHHHHHHHHHHH----hcCCC-c
Confidence 445555543344589999999996 22334433 2245689999973 244555555543 23443 1
Q ss_pred EEeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHH-HHhhCCCEEEEEeecC
Q 039114 430 YSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRL-IKRINPDLFVHGVANG 497 (632)
Q Consensus 430 F~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~-Ir~L~P~Vfv~~e~n~ 497 (632)
...+....+++.. ....=..|+ +.+.+|++.+ + ..+|+. .+.|+|.-.++....+
T Consensus 98 v~~~~~d~~~~~~---~~~~fD~V~--~~~~l~~~~~-------~-~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 98 VELVHGNAMELPF---DDNSFDYVT--IGFGLRNVPD-------Y-MQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred eEEEEechhcCCC---CCCCccEEE--EecccccCCC-------H-HHHHHHHHHHcCcCeEEEEEECC
Confidence 2222222222221 111112333 4456777754 2 345554 5778998655443333
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.80 E-value=0.32 Score=49.24 Aligned_cols=105 Identities=21% Similarity=0.368 Sum_probs=59.7
Q ss_pred CeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccc
Q 039114 360 TKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWET 439 (632)
Q Consensus 360 ~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~ 439 (632)
..-+|+|+|.|.|. ++..|+.+- ..|..++||||.. .+.++.+.+++.++.. +.+++| +...+.+
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~-~~p~~~v~gvD~s------~~ml~~a~~~~~~~~~--~~~v~~--~~~d~~~ 117 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNI-NQPNVKIIGIDNS------QPMVERCRQHIAAYHS--EIPVEI--LCNDIRH 117 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhc-CCCCCeEEEEeCC------HHHHHHHHHHHHhcCC--CCCeEE--EECChhh
Confidence 34579999999994 444454431 1256899999963 3456666666654322 223344 2233333
Q ss_pred cCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEEEE
Q 039114 440 IKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLFVH 492 (632)
Q Consensus 440 l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vfv~ 492 (632)
+.. .... +|-|.+.|||+.++ .+..+|+.| |.|+|.-.++
T Consensus 118 ~~~-----~~~d--~v~~~~~l~~~~~~------~~~~~l~~i~~~LkpgG~l~ 158 (239)
T TIGR00740 118 VEI-----KNAS--MVILNFTLQFLPPE------DRIALLTKIYEGLNPNGVLV 158 (239)
T ss_pred CCC-----CCCC--EEeeecchhhCCHH------HHHHHHHHHHHhcCCCeEEE
Confidence 322 2222 34466778888643 234566665 6689987554
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=94.63 E-value=2.9 Score=43.42 Aligned_cols=106 Identities=16% Similarity=0.200 Sum_probs=59.5
Q ss_pred CCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeeccccc
Q 039114 359 ATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWE 438 (632)
Q Consensus 359 ~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E 438 (632)
...-+|+|+|.|.|. +...|+.+- +|.-+|||||.. .+.++.+.++....+....-..+|.. ...+
T Consensus 72 ~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~S------~~ml~~A~~r~~~~~~~~~~~i~~~~--~d~~ 137 (261)
T PLN02233 72 KMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDFS------SEQLAVAASRQELKAKSCYKNIEWIE--GDAT 137 (261)
T ss_pred CCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEECC------HHHHHHHHHHhhhhhhccCCCeEEEE--cccc
Confidence 344589999999996 334455442 234589999963 34566665554322222222233322 2223
Q ss_pred ccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCEE
Q 039114 439 TIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLF 490 (632)
Q Consensus 439 ~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vf 490 (632)
+ +....+.+=+|-|.+.|||+.| |...+-+..|-|+|.-.
T Consensus 138 ~-----lp~~~~sfD~V~~~~~l~~~~d-------~~~~l~ei~rvLkpGG~ 177 (261)
T PLN02233 138 D-----LPFDDCYFDAITMGYGLRNVVD-------RLKAMQEMYRVLKPGSR 177 (261)
T ss_pred c-----CCCCCCCEeEEEEecccccCCC-------HHHHHHHHHHHcCcCcE
Confidence 2 3333344545667788998864 33444445577999854
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=94.28 E-value=1.3 Score=45.41 Aligned_cols=114 Identities=18% Similarity=0.295 Sum_probs=63.2
Q ss_pred HHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEE
Q 039114 351 MIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEY 430 (632)
Q Consensus 351 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF 430 (632)
.+++.+.-...-+|+|+|-|.|. +...|+.+- |..++||||.. ...++ .|+.-++.|.
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s------~~~~~--------~a~~~~~~~~- 77 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSS------PEMVA--------AARERGVDAR- 77 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECC------HHHHH--------HHHhcCCcEE-
Confidence 45666654555789999999993 455666652 34689999963 22233 3334455442
Q ss_pred EeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCEEEEEeecCCCCCC
Q 039114 431 SAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVHGVANGTYNSP 502 (632)
Q Consensus 431 ~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vfv~~e~n~~~nsp 502 (632)
. ...+++. ..+.+=+|-|.+.|||+.| |...+-+..+.|+|.-.++....++...+
T Consensus 78 -~--~d~~~~~------~~~~fD~v~~~~~l~~~~d-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 133 (255)
T PRK14103 78 -T--GDVRDWK------PKPDTDVVVSNAALQWVPE-------HADLLVRWVDELAPGSWIAVQVPGNFDAP 133 (255)
T ss_pred -E--cChhhCC------CCCCceEEEEehhhhhCCC-------HHHHHHHHHHhCCCCcEEEEEcCCCcCCh
Confidence 1 1222221 1133334445566788864 33344445577999976554443433334
No 7
>PRK06202 hypothetical protein; Provisional
Probab=94.11 E-value=0.89 Score=45.80 Aligned_cols=144 Identities=17% Similarity=0.177 Sum_probs=71.6
Q ss_pred CChHHHHHHHHHHHhcCcchhhhHHHhhHHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCC
Q 039114 322 TSVADVLKAYIVYISASPFRKASNFLTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPE 401 (632)
Q Consensus 322 ~s~~~~lkAy~~f~~~~Pf~kfa~f~ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~ 401 (632)
.++.++.+.|+.|-.+.++..--+-+-.+.+...+...+...|+|+|-|.|. +...|.....+. | |..+|||||..
T Consensus 22 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~l~~~~~~~iLDlGcG~G~-~~~~L~~~~~~~-g-~~~~v~gvD~s- 97 (232)
T PRK06202 22 CDPARLDRTYAGFRRVNRIVAGWRGLYRRLLRPALSADRPLTLLDIGCGGGD-LAIDLARWARRD-G-LRLEVTAIDPD- 97 (232)
T ss_pred cCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcCCCCCcEEEEeccCCCH-HHHHHHHHHHhC-C-CCcEEEEEcCC-
Confidence 3455666666655544333321112222233223333455789999999995 333333222211 2 45799999963
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHH
Q 039114 402 PGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRL 481 (632)
Q Consensus 402 ~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~ 481 (632)
.+.++.+.++. ..-++.|.. +. .+.+ ...++.+=+|-|.+.|||+.|+. ...+|+.
T Consensus 98 -----~~~l~~a~~~~----~~~~~~~~~--~~--~~~l-----~~~~~~fD~V~~~~~lhh~~d~~------~~~~l~~ 153 (232)
T PRK06202 98 -----PRAVAFARANP----RRPGVTFRQ--AV--SDEL-----VAEGERFDVVTSNHFLHHLDDAE------VVRLLAD 153 (232)
T ss_pred -----HHHHHHHHhcc----ccCCCeEEE--Ee--cccc-----cccCCCccEEEECCeeecCChHH------HHHHHHH
Confidence 23344433322 122454443 21 1111 11223444555667799997641 3467877
Q ss_pred HHhhCCCEEEEE
Q 039114 482 IKRINPDLFVHG 493 (632)
Q Consensus 482 Ir~L~P~Vfv~~ 493 (632)
+.++--.++++.
T Consensus 154 ~~r~~~~~~~i~ 165 (232)
T PRK06202 154 SAALARRLVLHN 165 (232)
T ss_pred HHHhcCeeEEEe
Confidence 766544555543
No 8
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=93.92 E-value=0.87 Score=47.96 Aligned_cols=114 Identities=11% Similarity=0.040 Sum_probs=62.9
Q ss_pred hHHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-
Q 039114 349 NRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVP- 427 (632)
Q Consensus 349 NqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVp- 427 (632)
.+.|++.+.-...-+|+|+|-+.| .+...++++. |.+++|++|.| ..++.+.++ ++..|+.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G----~~~~~~~~~~---p~~~~~~~D~~-------~~~~~a~~~----~~~~gl~~ 199 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIG----DISAAMLKHF---PELDSTILNLP-------GAIDLVNEN----AAEKGVAD 199 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchh----HHHHHHHHHC---CCCEEEEEecH-------HHHHHHHHH----HHhCCccc
Confidence 566777776555569999999999 3444555543 66899999863 335544443 3444553
Q ss_pred -EEEEeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCE-EEEEee
Q 039114 428 -FEYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDL-FVHGVA 495 (632)
Q Consensus 428 -FeF~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~V-fv~~e~ 495 (632)
++|.. ....+. + +....++++ ..-||+..++. ...+|+.+ +.|+|.- +++.+.
T Consensus 200 rv~~~~--~d~~~~---~--~~~~D~v~~--~~~lh~~~~~~------~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 200 RMRGIA--VDIYKE---S--YPEADAVLF--CRILYSANEQL------STIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred eEEEEe--cCccCC---C--CCCCCEEEe--EhhhhcCChHH------HHHHHHHHHHhcCCCCEEEEEEe
Confidence 34433 222111 1 122334333 23456655431 24567665 6799964 334443
No 9
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=92.83 E-value=10 Score=37.01 Aligned_cols=112 Identities=15% Similarity=0.250 Sum_probs=58.8
Q ss_pred HHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEE
Q 039114 350 RMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFE 429 (632)
Q Consensus 350 qaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFe 429 (632)
+.+++.+...+...|+|+|-+.|. +...++.+ +|+..++|+|+.. ...++.+.+++. ..-...
T Consensus 29 ~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~--~~~~~~~~~iD~~------~~~~~~~~~~~~-----~~~~i~ 91 (223)
T TIGR01934 29 RRAVKLIGVFKGQKVLDVACGTGD----LAIELAKS--APDRGKVTGVDFS------SEMLEVAKKKSE-----LPLNIE 91 (223)
T ss_pred HHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHh--cCCCceEEEEECC------HHHHHHHHHHhc-----cCCCce
Confidence 455555555567899999999984 33334433 2334789999863 233444444432 122233
Q ss_pred EEeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCEEEE
Q 039114 430 YSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVH 492 (632)
Q Consensus 430 F~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vfv~ 492 (632)
|.. ....++. ...+.+=+|-+.+.+|++.+ +...+-+..+.|+|.-.++
T Consensus 92 ~~~--~d~~~~~-----~~~~~~D~i~~~~~~~~~~~-------~~~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 92 FIQ--ADAEALP-----FEDNSFDAVTIAFGLRNVTD-------IQKALREMYRVLKPGGRLV 140 (223)
T ss_pred EEe--cchhcCC-----CCCCcEEEEEEeeeeCCccc-------HHHHHHHHHHHcCCCcEEE
Confidence 332 2222221 12233444445566777653 3333444456689987554
No 10
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=92.03 E-value=9 Score=39.92 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=91.2
Q ss_pred HHhcCcchhhhH-HHhhHHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHH
Q 039114 334 YISASPFRKASN-FLTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEE 412 (632)
Q Consensus 334 f~~~~Pf~kfa~-f~ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~lee 412 (632)
|-.+..++.|+. .+=+++..+.+.-.+-.+|+|.+-|-| .|.-+ |+++-| .-+|||||.. ...|+.
T Consensus 24 YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTG-d~a~~---~~k~~g---~g~v~~~D~s------~~ML~~ 90 (238)
T COG2226 24 YDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTG-DMALL---LAKSVG---TGEVVGLDIS------ESMLEV 90 (238)
T ss_pred HHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCcc-HHHHH---HHHhcC---CceEEEEECC------HHHHHH
Confidence 333445555553 344455555544336789999999988 44443 443333 7899999973 345666
Q ss_pred HHHHHHHHHHhCCCc-EEEEeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEE
Q 039114 413 TGHRLKKAAERCNVP-FEYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLF 490 (632)
Q Consensus 413 TGrRL~~fA~~~gVp-FeF~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vf 490 (632)
..+|+.+ .|+- ++| |...-|. |....+-.=+|.|.|.|||+.| .+.+|+-+ |=|+|...
T Consensus 91 a~~k~~~----~~~~~i~f--v~~dAe~-----LPf~D~sFD~vt~~fglrnv~d--------~~~aL~E~~RVlKpgG~ 151 (238)
T COG2226 91 AREKLKK----KGVQNVEF--VVGDAEN-----LPFPDNSFDAVTISFGLRNVTD--------IDKALKEMYRVLKPGGR 151 (238)
T ss_pred HHHHhhc----cCccceEE--EEechhh-----CCCCCCccCEEEeeehhhcCCC--------HHHHHHHHHHhhcCCeE
Confidence 6555543 2322 444 3333344 4444456668899999999986 36777766 55899986
Q ss_pred EEEeecCCCCCCchHHHHHHHHH-HHHH-HHHHHhhcCC
Q 039114 491 VHGVANGTYNSPFFVSRFKEAMF-HFSA-LFDMLEATVP 527 (632)
Q Consensus 491 v~~e~n~~~nsp~F~~RF~EAL~-yYsA-lFDsLda~~p 527 (632)
+++..=.....+- |+.+++ ||.. ++=.+.....
T Consensus 152 ~~vle~~~p~~~~----~~~~~~~~~~~~v~P~~g~~~~ 186 (238)
T COG2226 152 LLVLEFSKPDNPV----LRKAYILYYFKYVLPLIGKLVA 186 (238)
T ss_pred EEEEEcCCCCchh----hHHHHHHHHHHhHhhhhceeee
Confidence 5544433333333 333443 3333 4444444433
No 11
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=90.75 E-value=1.3 Score=41.60 Aligned_cols=104 Identities=19% Similarity=0.339 Sum_probs=57.2
Q ss_pred CeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-EEEEeeccccc
Q 039114 360 TKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVP-FEYSAIAQKWE 438 (632)
Q Consensus 360 ~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVp-FeF~~Ia~~~E 438 (632)
+..+|+|+|.|.|..= ..|+.+- .|..+|||||.. .+.++ +..+.+++.+++ .+|.. ..++
T Consensus 3 ~~~~iLDlGcG~G~~~----~~l~~~~--~~~~~i~gvD~s------~~~i~----~a~~~~~~~~~~ni~~~~--~d~~ 64 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLL----IQLAKEL--NPGAKIIGVDIS------EEMIE----YAKKRAKELGLDNIEFIQ--GDIE 64 (152)
T ss_dssp TTSEEEEET-TTSHHH----HHHHHHS--TTTSEEEEEESS------HHHHH----HHHHHHHHTTSTTEEEEE--SBTT
T ss_pred CCCEEEEecCcCcHHH----HHHHHhc--CCCCEEEEEECc------HHHHH----HhhcccccccccccceEE--eehh
Confidence 4578999999999433 3344211 134569999973 23333 334466677887 55543 4444
Q ss_pred ccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCEEEE
Q 039114 439 TIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVH 492 (632)
Q Consensus 439 ~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vfv~ 492 (632)
++... +. +.+=+|.+...++|+.+ +...+-+.++.|+|...++
T Consensus 65 ~l~~~-~~---~~~D~I~~~~~l~~~~~-------~~~~l~~~~~~lk~~G~~i 107 (152)
T PF13847_consen 65 DLPQE-LE---EKFDIIISNGVLHHFPD-------PEKVLKNIIRLLKPGGILI 107 (152)
T ss_dssp CGCGC-SS---TTEEEEEEESTGGGTSH-------HHHHHHHHHHHEEEEEEEE
T ss_pred ccccc-cC---CCeeEEEEcCchhhccC-------HHHHHHHHHHHcCCCcEEE
Confidence 43322 22 33334444444566653 3344445567889886554
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=90.38 E-value=2.2 Score=39.26 Aligned_cols=97 Identities=21% Similarity=0.399 Sum_probs=54.5
Q ss_pred cCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccc
Q 039114 358 KATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKW 437 (632)
Q Consensus 358 g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~ 437 (632)
..+.-.|+|+|-+.| .| .+.|+.+ |. ++|||+.. ...++. ..+.+.-....
T Consensus 20 ~~~~~~vLDiGcG~G-~~---~~~l~~~--~~---~~~g~D~~------~~~~~~-----------~~~~~~~~~~~--- 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-SF---LRALAKR--GF---EVTGVDIS------PQMIEK-----------RNVVFDNFDAQ--- 70 (161)
T ss_dssp TTTTSEEEEESSTTS-HH---HHHHHHT--TS---EEEEEESS------HHHHHH-----------TTSEEEEEECH---
T ss_pred cCCCCEEEEEcCCCC-HH---HHHHHHh--CC---EEEEEECC------HHHHhh-----------hhhhhhhhhhh---
Confidence 355669999999999 44 4445544 32 99999963 122222 22332221111
Q ss_pred cccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEEE-EEeecC
Q 039114 438 ETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLFV-HGVANG 497 (632)
Q Consensus 438 E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vfv-~~e~n~ 497 (632)
+.....+-+=+|-|...|+|+.| | ..+|+.| +.|+|.-++ +.+.+.
T Consensus 71 ------~~~~~~~~fD~i~~~~~l~~~~d-------~-~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 71 ------DPPFPDGSFDLIICNDVLEHLPD-------P-EEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp ------THHCHSSSEEEEEEESSGGGSSH-------H-HHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ------hhhccccchhhHhhHHHHhhccc-------H-HHHHHHHHHhcCCCCEEEEEEcCC
Confidence 11112345556667788999974 3 3555555 568997544 444443
No 13
>PRK08317 hypothetical protein; Provisional
Probab=88.40 E-value=26 Score=34.22 Aligned_cols=111 Identities=15% Similarity=0.102 Sum_probs=56.5
Q ss_pred HHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEE
Q 039114 352 IGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYS 431 (632)
Q Consensus 352 ILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~ 431 (632)
+++.+.-...-+|+|+|.+.|. |.. .++.+- +|.-++|||+.. ...++.+.++.. ..+...+|.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~~---~~a~~~--~~~~~v~~~d~~------~~~~~~a~~~~~----~~~~~~~~~ 74 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DAR---ELARRV--GPEGRVVGIDRS------EAMLALAKERAA----GLGPNVEFV 74 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HHH---HHHHhc--CCCcEEEEEeCC------HHHHHHHHHHhh----CCCCceEEE
Confidence 4555554555689999999883 433 333332 245699999863 233444433311 112223333
Q ss_pred eecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCEEEE
Q 039114 432 AIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVH 492 (632)
Q Consensus 432 ~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vfv~ 492 (632)
.. ..+.+. ...+.+=+|-+...++|+.+ |...+-+..+.|+|.-.++
T Consensus 75 ~~--d~~~~~-----~~~~~~D~v~~~~~~~~~~~-------~~~~l~~~~~~L~~gG~l~ 121 (241)
T PRK08317 75 RG--DADGLP-----FPDGSFDAVRSDRVLQHLED-------PARALAEIARVLRPGGRVV 121 (241)
T ss_pred ec--ccccCC-----CCCCCceEEEEechhhccCC-------HHHHHHHHHHHhcCCcEEE
Confidence 21 122211 12222333444556777754 3344444556789997554
No 14
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=86.98 E-value=3.8 Score=42.14 Aligned_cols=111 Identities=19% Similarity=0.303 Sum_probs=59.7
Q ss_pred HHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEE
Q 039114 351 MIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEY 430 (632)
Q Consensus 351 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF 430 (632)
.+++.+...+-.+|+|.+.|.|--+.. |+.+-+ |.-+|||+|.. .+-++.+.+++.+.... ..+|
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~----l~~~~~--~~~~v~~vD~s------~~ML~~a~~k~~~~~~~---~i~~ 102 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRE----LARRVG--PNGKVVGVDIS------PGMLEVARKKLKREGLQ---NIEF 102 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHH----HGGGSS-----EEEEEES-------HHHHHHHHHHHHHTT-----SEEE
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHH----HHHHCC--CccEEEEecCC------HHHHHHHHHHHHhhCCC---CeeE
Confidence 344555556667999999999954443 444322 44599999973 35567777777654433 2333
Q ss_pred EeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCEE
Q 039114 431 SAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLF 490 (632)
Q Consensus 431 ~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vf 490 (632)
. .. +.++|....+.+=+|-|.|.||++.| +...+-...|-|+|.-.
T Consensus 103 v--~~-----da~~lp~~d~sfD~v~~~fglrn~~d-------~~~~l~E~~RVLkPGG~ 148 (233)
T PF01209_consen 103 V--QG-----DAEDLPFPDNSFDAVTCSFGLRNFPD-------RERALREMYRVLKPGGR 148 (233)
T ss_dssp E--E------BTTB--S-TT-EEEEEEES-GGG-SS-------HHHHHHHHHHHEEEEEE
T ss_pred E--Ec-----CHHHhcCCCCceeEEEHHhhHHhhCC-------HHHHHHHHHHHcCCCeE
Confidence 2 22 34455566677888999999999976 23344445577899753
No 15
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=86.10 E-value=27 Score=36.26 Aligned_cols=114 Identities=12% Similarity=0.129 Sum_probs=60.0
Q ss_pred HhhHHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCC
Q 039114 347 LTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNV 426 (632)
Q Consensus 347 ~ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gV 426 (632)
-+.+.|++.+.-...-+|+|+|-+.|.- ...|+.+.+ .++|||+.. ...++...++... .-
T Consensus 39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~----a~~la~~~~----~~v~giD~s------~~~~~~a~~~~~~-----~~ 99 (263)
T PTZ00098 39 EATTKILSDIELNENSKVLDIGSGLGGG----CKYINEKYG----AHVHGVDIC------EKMVNIAKLRNSD-----KN 99 (263)
T ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCChh----hHHHHhhcC----CEEEEEECC------HHHHHHHHHHcCc-----CC
Confidence 3456667776555667899999999963 234444332 589999963 2334444444321 11
Q ss_pred cEEEEeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEEEE
Q 039114 427 PFEYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLFVH 492 (632)
Q Consensus 427 pFeF~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vfv~ 492 (632)
..+|... ... .+....+.+=+|-+...++|+..+ .+..+|+.+ +-|+|.-.++
T Consensus 100 ~i~~~~~--D~~-----~~~~~~~~FD~V~s~~~l~h~~~~------d~~~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 100 KIEFEAN--DIL-----KKDFPENTFDMIYSRDAILHLSYA------DKKKLFEKCYKWLKPNGILL 153 (263)
T ss_pred ceEEEEC--Ccc-----cCCCCCCCeEEEEEhhhHHhCCHH------HHHHHHHHHHHHcCCCcEEE
Confidence 2333221 111 111222222233344456666532 245666665 6689996554
No 16
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=86.07 E-value=1.9 Score=37.60 Aligned_cols=97 Identities=24% Similarity=0.409 Sum_probs=51.2
Q ss_pred EEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccccCcc
Q 039114 364 IIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIKLD 443 (632)
Q Consensus 364 IIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~l~~e 443 (632)
|+|+|-|.|..=..|.+.+ .. | |..++||||.. .+.++.+.++..+ .+++.+|.. ..+.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~--~~-~-~~~~~~gvD~s------~~~l~~~~~~~~~----~~~~~~~~~--~D~~~---- 60 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF--DA-G-PSSRVIGVDIS------PEMLELAKKRFSE----DGPKVRFVQ--ADARD---- 60 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-------HHHHHHHHHHSHH----TTTTSEEEE--SCTTC----
T ss_pred CEEeecCCcHHHHHHHHHh--hh-c-ccceEEEEECC------HHHHHHHHHhchh----cCCceEEEE--CCHhH----
Confidence 7999999997666666665 22 2 56999999973 3456555544443 455666633 22322
Q ss_pred cccCCCCceEEEEeec-ccCCCCCCcccccchHHHHHHHHHh-hCC
Q 039114 444 DLKIDRDEVTVVTCMY-RLNYLPDDTQVKDSLRDAVLRLIKR-INP 487 (632)
Q Consensus 444 ~L~i~~~E~LaVN~~~-~L~~L~de~v~~~spRd~vL~~Ir~-L~P 487 (632)
+....+.+=+|-|.+ -++|+.++ -+..+|+.+.+ ++|
T Consensus 61 -l~~~~~~~D~v~~~~~~~~~~~~~------~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 61 -LPFSDGKFDLVVCSGLSLHHLSPE------ELEALLRRIARLLRP 99 (101)
T ss_dssp -HHHHSSSEEEEEE-TTGGGGSSHH------HHHHHHHHHHHTEEE
T ss_pred -CcccCCCeeEEEEcCCccCCCCHH------HHHHHHHHHHHHhCC
Confidence 222223444455544 48887643 24566666644 344
No 17
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=86.01 E-value=37 Score=33.42 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=54.6
Q ss_pred HhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEe
Q 039114 353 GKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSA 432 (632)
Q Consensus 353 LeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~ 432 (632)
++.+.-.+..+|+|+|-+.|. +...|+.+ +|+..++|+++.. ...++.+.+++... ....+..|..
T Consensus 44 ~~~~~~~~~~~vldiG~G~G~----~~~~l~~~--~~~~~~v~~~D~s------~~~~~~a~~~~~~~--~~~~~~~~~~ 109 (239)
T PRK00216 44 IKWLGVRPGDKVLDLACGTGD----LAIALAKA--VGKTGEVVGLDFS------EGMLAVGREKLRDL--GLSGNVEFVQ 109 (239)
T ss_pred HHHhCCCCCCeEEEeCCCCCH----HHHHHHHH--cCCCCeEEEEeCC------HHHHHHHHHhhccc--ccccCeEEEe
Confidence 333333345789999999984 22333332 2357899999863 23344444443221 1222344433
Q ss_pred ecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHH-HHhhCCCEEEE
Q 039114 433 IAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRL-IKRINPDLFVH 492 (632)
Q Consensus 433 Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~-Ir~L~P~Vfv~ 492 (632)
. .++++. +....-.+| -+.+.||++.+ + +.+|.. .+.|+|.-.++
T Consensus 110 ~--d~~~~~---~~~~~~D~I--~~~~~l~~~~~-------~-~~~l~~~~~~L~~gG~li 155 (239)
T PRK00216 110 G--DAEALP---FPDNSFDAV--TIAFGLRNVPD-------I-DKALREMYRVLKPGGRLV 155 (239)
T ss_pred c--ccccCC---CCCCCccEE--EEecccccCCC-------H-HHHHHHHHHhccCCcEEE
Confidence 2 222221 111111233 34456677653 2 345555 46688886544
No 18
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=85.72 E-value=28 Score=35.43 Aligned_cols=111 Identities=19% Similarity=0.238 Sum_probs=59.4
Q ss_pred hHHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcE
Q 039114 349 NRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPF 428 (632)
Q Consensus 349 NqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpF 428 (632)
+..|++.+.-...-+|+|+|-|.| .+...|+.+. |..++||||.. ...++.+.+++. + .
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G----~~~~~la~~~---~~~~v~gvD~s------~~~i~~a~~~~~------~--~ 78 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPG----NSTELLVERW---PAARITGIDSS------PAMLAEARSRLP------D--C 78 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCC----HHHHHHHHHC---CCCEEEEEECC------HHHHHHHHHhCC------C--C
Confidence 455666665455678999999999 2344555542 34699999963 233433333211 2 2
Q ss_pred EEEeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCEEEEEee
Q 039114 429 EYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVHGVA 495 (632)
Q Consensus 429 eF~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vfv~~e~ 495 (632)
+|... ..+++.. .+.+=+|-|.+.||++.| +...+-+..+.|+|.-.++...
T Consensus 79 ~~~~~--d~~~~~~------~~~fD~v~~~~~l~~~~d-------~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 79 QFVEA--DIASWQP------PQALDLIFANASLQWLPD-------HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred eEEEC--chhccCC------CCCccEEEEccChhhCCC-------HHHHHHHHHHhcCCCcEEEEEC
Confidence 33221 1222111 112213345567788765 2334444557789998665443
No 19
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=82.07 E-value=3.7 Score=42.87 Aligned_cols=100 Identities=25% Similarity=0.383 Sum_probs=66.2
Q ss_pred CeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccc
Q 039114 360 TKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWET 439 (632)
Q Consensus 360 ~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~ 439 (632)
..+-|.|+|-|-| .|-+.||+ .| ..+||||... +.|+.. ...|.+-||-.+|...+
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr-~G----a~VtgiD~se------~~I~~A----k~ha~e~gv~i~y~~~~----- 114 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLAR-LG----ASVTGIDASE------KPIEVA----KLHALESGVNIDYRQAT----- 114 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHH-CC----CeeEEecCCh------HHHHHH----HHhhhhccccccchhhh-----
Confidence 4577999999988 77788884 44 8999999732 223322 23566667776666543
Q ss_pred cCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCEEEE
Q 039114 440 IKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVH 492 (632)
Q Consensus 440 l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vfv~ 492 (632)
.++|.-..+-.=||-||=-|.|++| |..-+....+.++|.-+++
T Consensus 115 --~edl~~~~~~FDvV~cmEVlEHv~d-------p~~~~~~c~~lvkP~G~lf 158 (243)
T COG2227 115 --VEDLASAGGQFDVVTCMEVLEHVPD-------PESFLRACAKLVKPGGILF 158 (243)
T ss_pred --HHHHHhcCCCccEEEEhhHHHccCC-------HHHHHHHHHHHcCCCcEEE
Confidence 4444332245668889999999987 4444444557789986543
No 20
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=81.90 E-value=33 Score=37.22 Aligned_cols=98 Identities=15% Similarity=0.197 Sum_probs=54.6
Q ss_pred eeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCC--cEEEEeeccccc
Q 039114 361 KVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNV--PFEYSAIAQKWE 438 (632)
Q Consensus 361 ~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gV--pFeF~~Ia~~~E 438 (632)
...|+|+|.|.|. +...|+. .| .++||||.. .+.++...++ ++.-++ ..+|.. ...+
T Consensus 132 g~~ILDIGCG~G~----~s~~La~-~g----~~V~GID~s------~~~i~~Ar~~----~~~~~~~~~i~~~~--~dae 190 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLAR-MG----ATVTGVDAV------DKNVKIARLH----ADMDPVTSTIEYLC--TTAE 190 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHH-cC----CEEEEEeCC------HHHHHHHHHH----HHhcCcccceeEEe--cCHH
Confidence 3479999999996 4556664 33 489999863 2334333322 222121 233432 2223
Q ss_pred ccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHH-hhCCCEEEE
Q 039114 439 TIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIK-RINPDLFVH 492 (632)
Q Consensus 439 ~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir-~L~P~Vfv~ 492 (632)
++. ...+.+=+|-|..-|+|+.|. +.+|+.|+ -|+|.-.++
T Consensus 191 ~l~-----~~~~~FD~Vi~~~vLeHv~d~--------~~~L~~l~r~LkPGG~li 232 (322)
T PLN02396 191 KLA-----DEGRKFDAVLSLEVIEHVANP--------AEFCKSLSALTIPNGATV 232 (322)
T ss_pred Hhh-----hccCCCCEEEEhhHHHhcCCH--------HHHHHHHHHHcCCCcEEE
Confidence 332 122334456667788998762 45777664 578986544
No 21
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=81.83 E-value=11 Score=37.33 Aligned_cols=111 Identities=12% Similarity=0.185 Sum_probs=61.2
Q ss_pred HhhHHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCC
Q 039114 347 LTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNV 426 (632)
Q Consensus 347 ~ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gV 426 (632)
.+...|++++.-...-+|+|+|-|.|.-- ..|+.+ | .++||||.. ...++.+. +.++..|+
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a----~~la~~-g----~~V~~iD~s------~~~l~~a~----~~~~~~~~ 77 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNS----LYLSLA-G----YDVRAWDHN------PASIASVL----DMKARENL 77 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHH----HHHHHC-C----CeEEEEECC------HHHHHHHH----HHHHHhCC
Confidence 45667777776555569999999999633 334444 3 489999963 22343333 33445577
Q ss_pred cEEEEeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEE
Q 039114 427 PFEYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLF 490 (632)
Q Consensus 427 pFeF~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vf 490 (632)
+..+.... +.... +. ..=++++ |.+-||++.++ .+..+++.+ +.|+|.-.
T Consensus 78 ~v~~~~~d--~~~~~---~~-~~fD~I~--~~~~~~~~~~~------~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 78 PLRTDAYD--INAAA---LN-EDYDFIF--STVVFMFLQAG------RVPEIIANMQAHTRPGGY 128 (195)
T ss_pred CceeEecc--chhcc---cc-CCCCEEE--EecccccCCHH------HHHHHHHHHHHHhCCCcE
Confidence 64443321 21111 11 1123333 33446776532 245677765 56899964
No 22
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=81.42 E-value=38 Score=37.95 Aligned_cols=112 Identities=12% Similarity=0.080 Sum_probs=62.0
Q ss_pred hHHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcE
Q 039114 349 NRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPF 428 (632)
Q Consensus 349 NqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpF 428 (632)
...+++.+.-.+.-+|+|+|.|.|. +...|+.+.+ .++||||.. .+.++.+.++. ...+...
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS------~~~l~~A~~~~----~~~~~~v 316 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLS------VNMISFALERA----IGRKCSV 316 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECC------HHHHHHHHHHh----hcCCCce
Confidence 3445555543344589999999994 4455666543 489999973 23444443332 2333345
Q ss_pred EEEeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCEEEE
Q 039114 429 EYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVH 492 (632)
Q Consensus 429 eF~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vfv~ 492 (632)
+|... .+.++ .+..+.+=+|-|...++|+.| |...+-...|-|+|.-.++
T Consensus 317 ~~~~~--d~~~~-----~~~~~~fD~I~s~~~l~h~~d-------~~~~l~~~~r~LkpgG~l~ 366 (475)
T PLN02336 317 EFEVA--DCTKK-----TYPDNSFDVIYSRDTILHIQD-------KPALFRSFFKWLKPGGKVL 366 (475)
T ss_pred EEEEc--CcccC-----CCCCCCEEEEEECCcccccCC-------HHHHHHHHHHHcCCCeEEE
Confidence 55332 22221 122233445556677888864 3333444457789997654
No 23
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=81.34 E-value=3.3 Score=43.25 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=30.6
Q ss_pred cCCeeEEEEcccccccccHHHHHHHhcCC--CCCCeEEEeeecCC
Q 039114 358 KATKVHIIDFGISYGFQWPCFIQRQSFRP--GGPPKIRITGIELP 400 (632)
Q Consensus 358 g~~~VHIIDfgI~~G~QWP~Liq~La~R~--gGPP~LRITgI~~p 400 (632)
..+.++|.|.|-+.|--+-+|--.|+..- ...+..+|||+|..
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis 141 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDID 141 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECC
Confidence 34569999999999987666655555431 12347999999974
No 24
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=81.33 E-value=5.7 Score=32.88 Aligned_cols=92 Identities=23% Similarity=0.304 Sum_probs=52.2
Q ss_pred EEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccccCccc
Q 039114 365 IDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIKLDD 444 (632)
Q Consensus 365 IDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~l~~e~ 444 (632)
+|+|.+.|.....|.+. +-.++|+||.. .+.++.+.++ .+..+++ | +. .+.++
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~------~~~~~~~~~~----~~~~~~~--~--~~-----~d~~~ 53 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDIS------EEMLEQARKR----LKNEGVS--F--RQ-----GDAED 53 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-------HHHHHHHHHH----TTTSTEE--E--EE-----SBTTS
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCC------HHHHHHHHhc----ccccCch--h--ee-----ehHHh
Confidence 58899988766665554 34899999863 2334333332 2333444 2 11 23445
Q ss_pred ccCCCCceEEEEeecccCCCCCCcccccchHHHHHHH-HHhhCCCEEE
Q 039114 445 LKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRL-IKRINPDLFV 491 (632)
Q Consensus 445 L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~-Ir~L~P~Vfv 491 (632)
+.+..+-+=+|-|...++|+. . +..+|+. .|-|+|.-+.
T Consensus 54 l~~~~~sfD~v~~~~~~~~~~-------~-~~~~l~e~~rvLk~gG~l 93 (95)
T PF08241_consen 54 LPFPDNSFDVVFSNSVLHHLE-------D-PEAALREIYRVLKPGGRL 93 (95)
T ss_dssp SSS-TT-EEEEEEESHGGGSS-------H-HHHHHHHHHHHEEEEEEE
T ss_pred Cccccccccccccccceeecc-------C-HHHHHHHHHHHcCcCeEE
Confidence 555566676788888888882 2 3455554 4668887654
No 25
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=80.70 E-value=18 Score=35.89 Aligned_cols=110 Identities=8% Similarity=0.116 Sum_probs=57.5
Q ss_pred hHHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-
Q 039114 349 NRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVP- 427 (632)
Q Consensus 349 NqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVp- 427 (632)
.+.+++.+.....-.|+|+|-|.|. +...|+.+ | .+|||||.. .+.++...+ + ++..+++
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~-g----~~V~gvD~S------~~~i~~a~~-~---~~~~~~~~ 79 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN-G----FDVTAWDKN------PMSIANLER-I---KAAENLDN 79 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC-C----CEEEEEeCC------HHHHHHHHH-H---HHHcCCCc
Confidence 3444555544444689999999995 33446654 2 489999873 233444332 2 3334554
Q ss_pred EEEEeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEEE
Q 039114 428 FEYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLFV 491 (632)
Q Consensus 428 FeF~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vfv 491 (632)
.++ +...++++.. . ..=.+|+ |.+.+|++.++ .+..+++.+ +.|+|.-.+
T Consensus 80 v~~--~~~d~~~~~~---~-~~fD~I~--~~~~~~~~~~~------~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 80 LHT--AVVDLNNLTF---D-GEYDFIL--STVVLMFLEAK------TIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred ceE--EecChhhCCc---C-CCcCEEE--EecchhhCCHH------HHHHHHHHHHHHcCCCcEE
Confidence 232 2222332221 1 1123344 33456666532 245666655 668999753
No 26
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=79.42 E-value=16 Score=38.24 Aligned_cols=96 Identities=17% Similarity=0.304 Sum_probs=52.8
Q ss_pred EEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccccCc
Q 039114 363 HIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIKL 442 (632)
Q Consensus 363 HIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~l~~ 442 (632)
+|+|+|-|.|. +...|+.+ | .++||||.. ...++. +.+.|+..++.+++... .++...
T Consensus 123 ~vLDlGcG~G~----~~~~la~~-g----~~V~avD~s------~~ai~~----~~~~~~~~~l~v~~~~~--D~~~~~- 180 (287)
T PRK12335 123 KALDLGCGQGR----NSLYLALL-G----FDVTAVDIN------QQSLEN----LQEIAEKENLNIRTGLY--DINSAS- 180 (287)
T ss_pred CEEEeCCCCCH----HHHHHHHC-C----CEEEEEECC------HHHHHH----HHHHHHHcCCceEEEEe--chhccc-
Confidence 79999999995 34445554 3 589999963 233333 33455666776555332 122111
Q ss_pred ccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEEE
Q 039114 443 DDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLFV 491 (632)
Q Consensus 443 e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vfv 491 (632)
+. ..=.+++.+ +-||++.++ -+..+|+.+ +.|+|.-.+
T Consensus 181 --~~-~~fD~I~~~--~vl~~l~~~------~~~~~l~~~~~~LkpgG~~ 219 (287)
T PRK12335 181 --IQ-EEYDFILST--VVLMFLNRE------RIPAIIKNMQEHTNPGGYN 219 (287)
T ss_pred --cc-CCccEEEEc--chhhhCCHH------HHHHHHHHHHHhcCCCcEE
Confidence 11 111334433 456676533 235667665 568998653
No 27
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=77.89 E-value=13 Score=39.18 Aligned_cols=139 Identities=19% Similarity=0.281 Sum_probs=74.5
Q ss_pred hhHHHhhHHHHhcccc----CCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHH
Q 039114 343 ASNFLTNRMIGKTTEK----ATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLK 418 (632)
Q Consensus 343 fa~f~ANqaILeA~~g----~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~ 418 (632)
-+++.+-..||+.+.. -.--+|+|||-|-|. .+.-+...- +-...+|.||.. ..+.+.|++|.
T Consensus 12 p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGt---a~wAa~~~~---~~~~~~~~vd~s-------~~~~~l~~~l~ 78 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGT---ALWAAREVW---PSLKEYTCVDRS-------PEMLELAKRLL 78 (274)
T ss_pred hHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHH---HHHHHHHHh---cCceeeeeecCC-------HHHHHHHHHHH
Confidence 3556666777776652 344599999999873 222111111 134789999853 34567788876
Q ss_pred HHHHhCCCcEEEEeecccc-cccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEEEEEeec
Q 039114 419 KAAERCNVPFEYSAIAQKW-ETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLFVHGVAN 496 (632)
Q Consensus 419 ~fA~~~gVpFeF~~Ia~~~-E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vfv~~e~n 496 (632)
+-... ..- ..| ..+..+.+.+.+...|+ +.|.|..|.++ .|..+++.+ ..++| ++|++|.
T Consensus 79 ~~~~~--~~~------~~~~~~~~~~~~~~~~~DLvi--~s~~L~EL~~~------~r~~lv~~LW~~~~~-~LVlVEp- 140 (274)
T PF09243_consen 79 RAGPN--NRN------AEWRRVLYRDFLPFPPDDLVI--ASYVLNELPSA------ARAELVRSLWNKTAP-VLVLVEP- 140 (274)
T ss_pred hcccc--ccc------chhhhhhhcccccCCCCcEEE--EehhhhcCCch------HHHHHHHHHHHhccC-cEEEEcC-
Confidence 53321 110 011 11112223333333333 34566666542 467777777 55666 5555444
Q ss_pred CCCCCCchHHHHHHHH
Q 039114 497 GTYNSPFFVSRFKEAM 512 (632)
Q Consensus 497 ~~~nsp~F~~RF~EAL 512 (632)
|+..+--.+.+.|+.|
T Consensus 141 Gt~~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 141 GTPAGFRRIAEARDQL 156 (274)
T ss_pred CChHHHHHHHHHHHHH
Confidence 4444445677777776
No 28
>PLN02244 tocopherol O-methyltransferase
Probab=77.03 E-value=26 Score=37.92 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=55.5
Q ss_pred CeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc--EEEEeecccc
Q 039114 360 TKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVP--FEYSAIAQKW 437 (632)
Q Consensus 360 ~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVp--FeF~~Ia~~~ 437 (632)
..-+|+|+|-|.|. +...|+.+-| .++|||+.. ...++.+. +.++..|+. .+|.. ...
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s------~~~i~~a~----~~~~~~g~~~~v~~~~--~D~ 177 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLS------PVQAARAN----ALAAAQGLSDKVSFQV--ADA 177 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECC------HHHHHHHH----HHHHhcCCCCceEEEE--cCc
Confidence 34579999999994 4556666543 489999863 22233322 233444542 44432 222
Q ss_pred cccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHH-HHHhhCCCEEE
Q 039114 438 ETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLR-LIKRINPDLFV 491 (632)
Q Consensus 438 E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~-~Ir~L~P~Vfv 491 (632)
+++ ....+.+=+|-|...++|+.|. ..+|+ ..|-|+|.-.+
T Consensus 178 ~~~-----~~~~~~FD~V~s~~~~~h~~d~--------~~~l~e~~rvLkpGG~l 219 (340)
T PLN02244 178 LNQ-----PFEDGQFDLVWSMESGEHMPDK--------RKFVQELARVAAPGGRI 219 (340)
T ss_pred ccC-----CCCCCCccEEEECCchhccCCH--------HHHHHHHHHHcCCCcEE
Confidence 222 2223444456667788898752 34555 45778997543
No 29
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=75.88 E-value=44 Score=34.25 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=60.5
Q ss_pred HHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEE
Q 039114 351 MIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEY 430 (632)
Q Consensus 351 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF 430 (632)
.|++.+. .+.-+|+|+|-|.|. +...|+.+ | .++||||.. .+.++.+.+++ +..|+.-..
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~-g----~~v~~vD~s------~~~l~~a~~~~----~~~g~~~~v 95 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL-G----HQVILCDLS------AEMIQRAKQAA----EAKGVSDNM 95 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc-C----CEEEEEECC------HHHHHHHHHHH----HhcCCccce
Confidence 4566654 334699999999993 45556655 2 489999863 34455554443 334543222
Q ss_pred EeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCEEEE
Q 039114 431 SAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVH 492 (632)
Q Consensus 431 ~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vfv~ 492 (632)
..+...++++.. ...+.+=+|-|..-|+|+.+ |...+-...+-|+|.-.+.
T Consensus 96 ~~~~~d~~~l~~----~~~~~fD~V~~~~vl~~~~~-------~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 96 QFIHCAAQDIAQ----HLETPVDLILFHAVLEWVAD-------PKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred EEEEcCHHHHhh----hcCCCCCEEEehhHHHhhCC-------HHHHHHHHHHHcCCCeEEE
Confidence 223223333211 11122223335566777753 4444445557789997654
No 30
>PRK05785 hypothetical protein; Provisional
Probab=75.41 E-value=38 Score=34.47 Aligned_cols=92 Identities=9% Similarity=0.040 Sum_probs=51.7
Q ss_pred eeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeeccccccc
Q 039114 361 KVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETI 440 (632)
Q Consensus 361 ~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~l 440 (632)
.-.|+|+|.|.|.- ...|+.+.+ .+|||||.. .+.++....+ .++ +....++
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~~----~~v~gvD~S------~~Ml~~a~~~---------~~~----~~~d~~~- 103 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVFK----YYVVALDYA------ENMLKMNLVA---------DDK----VVGSFEA- 103 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhcC----CEEEEECCC------HHHHHHHHhc---------cce----EEechhh-
Confidence 34799999999943 334454432 489999963 2333332211 111 2222232
Q ss_pred CcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEEEE
Q 039114 441 KLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLFVH 492 (632)
Q Consensus 441 ~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vfv~ 492 (632)
+....+.+=+|-|.+.|||+.| .+.+|+.+ |-++|.++++
T Consensus 104 ----lp~~d~sfD~v~~~~~l~~~~d--------~~~~l~e~~RvLkp~~~il 144 (226)
T PRK05785 104 ----LPFRDKSFDVVMSSFALHASDN--------IEKVIAEFTRVSRKQVGFI 144 (226)
T ss_pred ----CCCCCCCEEEEEecChhhccCC--------HHHHHHHHHHHhcCceEEE
Confidence 3333454556667778888765 24566666 5679965454
No 31
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=74.75 E-value=9 Score=33.29 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=54.7
Q ss_pred EEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccccCc
Q 039114 363 HIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIKL 442 (632)
Q Consensus 363 HIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~l~~ 442 (632)
+|+|+|-+.|. +...|+.+. |..+|||||.. .+.++.+.+++.+.... -..+|.. ..+ .
T Consensus 4 ~vLDlGcG~G~----~~~~l~~~~---~~~~v~gvD~s------~~~~~~a~~~~~~~~~~--~~i~~~~--~d~-~--- 62 (112)
T PF12847_consen 4 RVLDLGCGTGR----LSIALARLF---PGARVVGVDIS------PEMLEIARERAAEEGLS--DRITFVQ--GDA-E--- 62 (112)
T ss_dssp EEEEETTTTSH----HHHHHHHHH---TTSEEEEEESS------HHHHHHHHHHHHHTTTT--TTEEEEE--SCC-H---
T ss_pred EEEEEcCcCCH----HHHHHHhcC---CCCEEEEEeCC------HHHHHHHHHHHHhcCCC--CCeEEEE--Ccc-c---
Confidence 68999999993 333444321 34789999962 45567766666443333 3334332 222 0
Q ss_pred ccccC-CCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEEEE
Q 039114 443 DDLKI-DRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLFVH 492 (632)
Q Consensus 443 e~L~i-~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vfv~ 492 (632)
..... .+=++++.+. +.++++.+. .-+..+|+.+ +.|+|.-.++
T Consensus 63 ~~~~~~~~~D~v~~~~-~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~lv 108 (112)
T PF12847_consen 63 FDPDFLEPFDLVICSG-FTLHFLLPL-----DERRRVLERIRRLLKPGGRLV 108 (112)
T ss_dssp GGTTTSSCEEEEEECS-GSGGGCCHH-----HHHHHHHHHHHHHEEEEEEEE
T ss_pred cCcccCCCCCEEEECC-Cccccccch-----hHHHHHHHHHHHhcCCCcEEE
Confidence 11111 1123444444 455655432 1245667766 5689987654
No 32
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=73.88 E-value=42 Score=37.59 Aligned_cols=113 Identities=11% Similarity=0.166 Sum_probs=59.0
Q ss_pred HHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEE
Q 039114 350 RMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFE 429 (632)
Q Consensus 350 qaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFe 429 (632)
..|++.+.....-+|+|+|-|.|.- ...|+.+ + -++||||.. .+.++.. +.+. ...-..+
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~----~~~la~~-~----~~v~giD~s------~~~l~~a-~~~~----~~~~~i~ 86 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRF----TGELAKK-A----GQVIALDFI------ESVIKKN-ESIN----GHYKNVK 86 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHH----HHHHHhh-C----CEEEEEeCC------HHHHHHH-HHHh----ccCCceE
Confidence 3455565544444899999999943 3445544 2 178999863 2334332 2111 1111223
Q ss_pred EEeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEEEEE
Q 039114 430 YSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLFVHG 493 (632)
Q Consensus 430 F~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vfv~~ 493 (632)
|... ..++ ..+....+.+=+|-|.+.|+|+.++. +..+|+.+ |-|+|.-+++.
T Consensus 87 ~~~~--d~~~---~~~~~~~~~fD~I~~~~~l~~l~~~~------~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 87 FMCA--DVTS---PDLNISDGSVDLIFSNWLLMYLSDKE------VENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred EEEe--cccc---cccCCCCCCEEEEehhhhHHhCCHHH------HHHHHHHHHHhcCCCeEEEE
Confidence 3221 1111 11222234344555667889987642 35666665 55899976654
No 33
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=72.88 E-value=30 Score=34.96 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=27.8
Q ss_pred HHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCC
Q 039114 350 RMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELP 400 (632)
Q Consensus 350 qaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p 400 (632)
..++++..=...-+|||+|-+.| .+..+|+.+. |.||+|..|+|
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G----~~~~~l~~~~---P~l~~~v~Dlp 133 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSG----HFAIALARAY---PNLRATVFDLP 133 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTS----HHHHHHHHHS---TTSEEEEEE-H
T ss_pred hhhhccccccCccEEEeccCcch----HHHHHHHHHC---CCCcceeeccH
Confidence 34455554344458999999999 3334444443 67999999986
No 34
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=72.34 E-value=1e+02 Score=30.20 Aligned_cols=99 Identities=16% Similarity=0.334 Sum_probs=51.6
Q ss_pred CeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccc
Q 039114 360 TKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWET 439 (632)
Q Consensus 360 ~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~ 439 (632)
+..+|+|+|-|.|.- ...|+.+ + |..++|+||.. .+.++.+..++. . ++ +| +...+++
T Consensus 34 ~~~~vLDlG~G~G~~----~~~l~~~--~-~~~~~~~~D~~------~~~~~~~~~~~~----~-~~--~~--~~~d~~~ 91 (240)
T TIGR02072 34 IPASVLDIGCGTGYL----TRALLKR--F-PQAEFIALDIS------AGMLAQAKTKLS----E-NV--QF--ICGDAEK 91 (240)
T ss_pred CCCeEEEECCCccHH----HHHHHHh--C-CCCcEEEEeCh------HHHHHHHHHhcC----C-CC--eE--Eecchhh
Confidence 346899999999952 3333333 2 45789999963 233444433332 0 22 22 2222332
Q ss_pred cCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEEEEE
Q 039114 440 IKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLFVHG 493 (632)
Q Consensus 440 l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vfv~~ 493 (632)
+. ...+.+=+|-|.+.|||+.| + ..+|..+ +.|+|+-+++.
T Consensus 92 ~~-----~~~~~fD~vi~~~~l~~~~~-------~-~~~l~~~~~~L~~~G~l~~ 133 (240)
T TIGR02072 92 LP-----LEDSSFDLIVSNLALQWCDD-------L-SQALSELARVLKPGGLLAF 133 (240)
T ss_pred CC-----CCCCceeEEEEhhhhhhccC-------H-HHHHHHHHHHcCCCcEEEE
Confidence 22 12222333445566777753 2 3466655 56899876553
No 35
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=71.82 E-value=46 Score=35.29 Aligned_cols=109 Identities=13% Similarity=0.170 Sum_probs=64.7
Q ss_pred eEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccc-c
Q 039114 362 VHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWET-I 440 (632)
Q Consensus 362 VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~-l 440 (632)
..|||+|-|.|.-=..|+++|.. ..++||||.. .+.|+.+.++|.+- --+++++ .|.....+ +
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS------~~mL~~a~~~l~~~--~p~~~v~--~i~gD~~~~~ 128 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ------PARYVPIDIS------ADALKESAAALAAD--YPQLEVH--GICADFTQPL 128 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc------CCeEEEEECC------HHHHHHHHHHHHhh--CCCceEE--EEEEcccchh
Confidence 57999999999666667777642 3789999974 46678888887641 1234433 34332221 1
Q ss_pred CcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCC-EEEEE
Q 039114 441 KLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPD-LFVHG 493 (632)
Q Consensus 441 ~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~-Vfv~~ 493 (632)
.... ....+..+++.+-..++|+..+. ...+|+.| +.|+|. +|+++
T Consensus 129 ~~~~-~~~~~~~~~~~~gs~~~~~~~~e------~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 129 ALPP-EPAAGRRLGFFPGSTIGNFTPEE------AVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred hhhc-ccccCCeEEEEecccccCCCHHH------HHHHHHHHHHhcCCCCEEEEe
Confidence 1000 11112466666666788875431 34677777 458996 45543
No 36
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=69.90 E-value=32 Score=37.19 Aligned_cols=103 Identities=20% Similarity=0.292 Sum_probs=58.2
Q ss_pred CeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHH-hC-CCcEEEEeecccc
Q 039114 360 TKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAE-RC-NVPFEYSAIAQKW 437 (632)
Q Consensus 360 ~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~-~~-gVpFeF~~Ia~~~ 437 (632)
+...|+|+|-|.|. +...|+.+ | .+|||||.. ...++...++..+.-. .. +...+|... .+
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~S------~~ml~~A~~~~~~~~~~~~~~~~~~f~~~--Dl 206 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDIS------AAMVAEAERRAKEALAALPPEVLPKFEAN--DL 206 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEECC------HHHHHHHHHHHHhcccccccccceEEEEc--ch
Confidence 34689999999985 44556544 3 489999973 3456655555432110 01 223444332 23
Q ss_pred cccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCEEEEE
Q 039114 438 ETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVHG 493 (632)
Q Consensus 438 E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vfv~~ 493 (632)
+++ . +..=+|-|..-|+|++++ ....+++.++++.|..+++.
T Consensus 207 ~~l-----~---~~fD~Vv~~~vL~H~p~~------~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 207 ESL-----S---GKYDTVTCLDVLIHYPQD------KADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred hhc-----C---CCcCEEEEcCEEEecCHH------HHHHHHHHHHhhcCCEEEEE
Confidence 222 1 111133366667787654 23567888888888877764
No 37
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=68.96 E-value=47 Score=36.05 Aligned_cols=150 Identities=11% Similarity=0.135 Sum_probs=86.7
Q ss_pred HHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-EE
Q 039114 351 MIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVP-FE 429 (632)
Q Consensus 351 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVp-Fe 429 (632)
.|..++. ....|||||-|.|..=..||++|.. .+. ..+-.+||.. .+.|+++.++|. .+ ..| .+
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~-~~~--~~~Y~plDIS------~~~L~~a~~~L~--~~--~~p~l~ 133 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALER-QKK--SVDYYALDVS------RSELQRTLAELP--LG--NFSHVR 133 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHh-cCC--CceEEEEECC------HHHHHHHHHhhh--hc--cCCCeE
Confidence 3444442 2347999999999999999999973 222 3788999974 567899988887 11 245 77
Q ss_pred EEeeccccccc-C-cccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHh--hCCC-EEEEEee--------c
Q 039114 430 YSAIAQKWETI-K-LDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKR--INPD-LFVHGVA--------N 496 (632)
Q Consensus 430 F~~Ia~~~E~l-~-~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~--L~P~-Vfv~~e~--------n 496 (632)
+++|....++. . +..-.+...-.++.-.-..+.|+..+. ...||+.|++ |+|. .|+++.- .
T Consensus 134 v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~e------a~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~ 207 (319)
T TIGR03439 134 CAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPE------AAAFLAGFLATALSPSDSFLIGLDGCKDPDKVL 207 (319)
T ss_pred EEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHH------HHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHH
Confidence 88876433221 1 000011111223332223555554321 3479999987 8885 4555442 2
Q ss_pred CCCCCCc-h-HHHHHHHHHHHHHHHHH
Q 039114 497 GTYNSPF-F-VSRFKEAMFHFSALFDM 521 (632)
Q Consensus 497 ~~~nsp~-F-~~RF~EAL~yYsAlFDs 521 (632)
+.||.+. . .....+.|.+--..++.
T Consensus 208 ~AY~d~~gvTa~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 208 RAYNDPGGVTRRFVLNGLVHANEILGS 234 (319)
T ss_pred HHhcCCcchhHHHHHHHHHHHHHHhCc
Confidence 2466542 2 22345677776666553
No 38
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=67.79 E-value=1.4e+02 Score=29.86 Aligned_cols=102 Identities=23% Similarity=0.357 Sum_probs=52.0
Q ss_pred cCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccc
Q 039114 358 KATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKW 437 (632)
Q Consensus 358 g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~ 437 (632)
.....+|+|+|.+.|. +...|+.+ + .++|+|+.. ...++.+.+++. ..++..+|... .+
T Consensus 46 ~~~~~~vLdiG~G~G~----~~~~l~~~-~----~~v~~iD~s------~~~~~~a~~~~~----~~~~~~~~~~~--~~ 104 (233)
T PRK05134 46 GLFGKRVLDVGCGGGI----LSESMARL-G----ADVTGIDAS------EENIEVARLHAL----ESGLKIDYRQT--TA 104 (233)
T ss_pred CCCCCeEEEeCCCCCH----HHHHHHHc-C----CeEEEEcCC------HHHHHHHHHHHH----HcCCceEEEec--CH
Confidence 3345689999999885 33344443 2 469999863 234454444433 23444455432 22
Q ss_pred cccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEEEE
Q 039114 438 ETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLFVH 492 (632)
Q Consensus 438 E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vfv~ 492 (632)
+.+... ..+-.=+|-|..-++|+.+ + ..+|+.+ +-|+|.-.++
T Consensus 105 ~~~~~~----~~~~fD~Ii~~~~l~~~~~-------~-~~~l~~~~~~L~~gG~l~ 148 (233)
T PRK05134 105 EELAAE----HPGQFDVVTCMEMLEHVPD-------P-ASFVRACAKLVKPGGLVF 148 (233)
T ss_pred HHhhhh----cCCCccEEEEhhHhhccCC-------H-HHHHHHHHHHcCCCcEEE
Confidence 222100 1122223334455666653 3 3455554 6678885443
No 39
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=67.73 E-value=31 Score=36.48 Aligned_cols=110 Identities=15% Similarity=0.211 Sum_probs=60.2
Q ss_pred HHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEE
Q 039114 350 RMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFE 429 (632)
Q Consensus 350 qaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFe 429 (632)
..|++.+.=+.-=||+|+|.| |-.++..+|++.| .++|||.+. .+..+. ..+.++..|++=.
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS------~~Q~~~----a~~~~~~~gl~~~ 113 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLS------EEQAEY----ARERIREAGLEDR 113 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-------HHHHHH----HHHHHHCSTSSST
T ss_pred HHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECC------HHHHHH----HHHHHHhcCCCCc
Confidence 445666654455689999776 5588888998864 799999863 233333 3445566787633
Q ss_pred EEeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEEE
Q 039114 430 YSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLFV 491 (632)
Q Consensus 430 F~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vfv 491 (632)
...+...+.++.. .=| +|-++-.+.|+..+ -...+++.| +-|+|.-..
T Consensus 114 v~v~~~D~~~~~~-----~fD---~IvSi~~~Ehvg~~------~~~~~f~~~~~~LkpgG~~ 162 (273)
T PF02353_consen 114 VEVRLQDYRDLPG-----KFD---RIVSIEMFEHVGRK------NYPAFFRKISRLLKPGGRL 162 (273)
T ss_dssp EEEEES-GGG--------S-S---EEEEESEGGGTCGG------GHHHHHHHHHHHSETTEEE
T ss_pred eEEEEeeccccCC-----CCC---EEEEEechhhcChh------HHHHHHHHHHHhcCCCcEE
Confidence 3333333433322 112 23344557777543 246788888 557998643
No 40
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=65.40 E-value=1.6e+02 Score=29.82 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=28.6
Q ss_pred hhHHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecC
Q 039114 348 TNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIEL 399 (632)
Q Consensus 348 ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~ 399 (632)
.-..+++.+.....-+|+|+|.|.|. +.+.|+.+ + -++||||.
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~ 72 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDL 72 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEEC
Confidence 33445555554444579999999993 55666653 2 48999996
No 41
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=64.37 E-value=74 Score=34.19 Aligned_cols=116 Identities=11% Similarity=0.222 Sum_probs=69.5
Q ss_pred hhHHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc
Q 039114 348 TNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVP 427 (632)
Q Consensus 348 ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVp 427 (632)
.-..|++-+.=+.--||.|+|-| |=.|+...|.+-| +++|||.+. .+..+...+| ++..|++
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCG----WG~l~~~aA~~y~----v~V~GvTlS------~~Q~~~~~~r----~~~~gl~ 121 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCG----WGGLAIYAAEEYG----VTVVGVTLS------EEQLAYAEKR----IAARGLE 121 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCC----hhHHHHHHHHHcC----CEEEEeeCC------HHHHHHHHHH----HHHcCCC
Confidence 33444555544566799998655 6789999998865 899999874 3334444333 3445665
Q ss_pred EEEEeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHh-hCCCE--EEEEee
Q 039114 428 FEYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKR-INPDL--FVHGVA 495 (632)
Q Consensus 428 FeF~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~-L~P~V--fv~~e~ 495 (632)
=..+.+.+.|.++... +=.|-++=.+.|+..+. -+.+++.+++ |+|+- +.|++.
T Consensus 122 ~~v~v~l~d~rd~~e~--------fDrIvSvgmfEhvg~~~------~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 122 DNVEVRLQDYRDFEEP--------FDRIVSVGMFEHVGKEN------YDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred cccEEEeccccccccc--------cceeeehhhHHHhCccc------HHHHHHHHHhhcCCCceEEEEEec
Confidence 3334444556555432 22333555677776543 3678888865 67774 334443
No 42
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=63.36 E-value=2.2e+02 Score=30.70 Aligned_cols=140 Identities=15% Similarity=0.069 Sum_probs=67.9
Q ss_pred CChHHHHHHHHHHHhcCcchhhhHHHh-------------hHHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCC
Q 039114 322 TSVADVLKAYIVYISASPFRKASNFLT-------------NRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGG 388 (632)
Q Consensus 322 ~s~~~~lkAy~~f~~~~Pf~kfa~f~A-------------NqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gG 388 (632)
.+..+....|..+....||.+-.+-.- -+.|+..+..-+.-+|+|+|-|.|. +...++.+ |
T Consensus 71 ~~~~~~~~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~----~~~~la~~--g 144 (322)
T PRK15068 71 LSEGQRKRIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGY----HMWRMLGA--G 144 (322)
T ss_pred CCHHHHHHHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhCCCCCCEEEEeccCCcH----HHHHHHHc--C
Confidence 344444455666666677755543321 1233334432222479999999993 22345543 3
Q ss_pred CCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccccCcccccCCCCceEEEEeecccCCCCCCc
Q 039114 389 PPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDT 468 (632)
Q Consensus 389 PP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~ 468 (632)
+- +++|||+. ...+.+. +...+++.. ..+.+|.. ..++++.. ++-+=+|-|+..|+|+.
T Consensus 145 ~~--~V~GiD~S------~~~l~q~-~a~~~~~~~-~~~i~~~~--~d~e~lp~------~~~FD~V~s~~vl~H~~--- 203 (322)
T PRK15068 145 AK--LVVGIDPS------QLFLCQF-EAVRKLLGN-DQRAHLLP--LGIEQLPA------LKAFDTVFSMGVLYHRR--- 203 (322)
T ss_pred CC--EEEEEcCC------HHHHHHH-HHHHHhcCC-CCCeEEEe--CCHHHCCC------cCCcCEEEECChhhccC---
Confidence 32 49999842 1112110 111222211 22334433 23333322 12222334555677764
Q ss_pred ccccchHHHHHHHHHhhCCCEEEE
Q 039114 469 QVKDSLRDAVLRLIKRINPDLFVH 492 (632)
Q Consensus 469 v~~~spRd~vL~~Ir~L~P~Vfv~ 492 (632)
+|.+.+-+.-+.|+|.-.++
T Consensus 204 ----dp~~~L~~l~~~LkpGG~lv 223 (322)
T PRK15068 204 ----SPLDHLKQLKDQLVPGGELV 223 (322)
T ss_pred ----CHHHHHHHHHHhcCCCcEEE
Confidence 36665556667789985443
No 43
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=62.54 E-value=95 Score=30.35 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=25.1
Q ss_pred HHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecC
Q 039114 351 MIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIEL 399 (632)
Q Consensus 351 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~ 399 (632)
.|.+.+... -+|+|+|-+.|. ++..|+.+.+ .+++||+.
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~~----~~~~giD~ 44 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEKQ----VRGYGIEI 44 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhccC----CcEEEEeC
Confidence 344444322 379999999994 5566765432 35699985
No 44
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=60.47 E-value=82 Score=31.59 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=51.7
Q ss_pred EEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccccCc
Q 039114 363 HIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIKL 442 (632)
Q Consensus 363 HIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~l~~ 442 (632)
.|+|+|-|.|..-..|.+.+ |..++|||+.. .+.++.+.+++. ++.+. . ....+
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~-------~~~~v~giDiS------~~~l~~A~~~~~------~~~~~--~--~d~~~--- 99 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLL-------PFKHIYGVEIN------EYAVEKAKAYLP------NINII--Q--GSLFD--- 99 (204)
T ss_pred cEEEEecCCCHHHHHHHHhC-------CCCeEEEEECC------HHHHHHHHhhCC------CCcEE--E--eeccC---
Confidence 59999999995544443322 23689999963 344554433221 23221 1 11111
Q ss_pred ccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCEEEEEeec
Q 039114 443 DDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVHGVAN 496 (632)
Q Consensus 443 e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vfv~~e~n 496 (632)
....+.+=+|-|..-|+|+..+ -+..+++.+.+..-+.+++++..
T Consensus 100 ---~~~~~sfD~V~~~~vL~hl~p~------~~~~~l~el~r~~~~~v~i~e~~ 144 (204)
T TIGR03587 100 ---PFKDNFFDLVLTKGVLIHINPD------NLPTAYRELYRCSNRYILIAEYY 144 (204)
T ss_pred ---CCCCCCEEEEEECChhhhCCHH------HHHHHHHHHHhhcCcEEEEEEee
Confidence 1122233334455667787432 23566777666655666666653
No 45
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=59.73 E-value=80 Score=31.38 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=35.9
Q ss_pred HHHhhHHHHhccc--cCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHH
Q 039114 345 NFLTNRMIGKTTE--KATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRL 417 (632)
Q Consensus 345 ~f~ANqaILeA~~--g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL 417 (632)
+-.....+++.+. ..+.-+|+|+|-+.|. +...|+.+. .+|||||.. .+.++...+++
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~~-----~~v~gvD~s------~~~i~~a~~~~ 97 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKRG-----AIVKAVDIS------EQMVQMARNRA 97 (219)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHCC-----CEEEEEECC------HHHHHHHHHHH
Confidence 3344455666554 2345699999999994 555666541 389999963 34455544444
No 46
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=58.66 E-value=86 Score=30.84 Aligned_cols=97 Identities=18% Similarity=0.249 Sum_probs=49.9
Q ss_pred eeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-EEEEeecccccc
Q 039114 361 KVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVP-FEYSAIAQKWET 439 (632)
Q Consensus 361 ~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVp-FeF~~Ia~~~E~ 439 (632)
.-+|+|+|-|.|. ....+ +.. . |..++||||.. .+.++.+ .+.+++.|++ ++| +...+++
T Consensus 43 ~~~vLDiGcGtG~-~s~~l-a~~-~----~~~~V~~iD~s------~~~~~~a----~~~~~~~~~~~i~~--i~~d~~~ 103 (181)
T TIGR00138 43 GKKVIDIGSGAGF-PGIPL-AIA-R----PELKLTLLESN------HKKVAFL----REVKAELGLNNVEI--VNGRAED 103 (181)
T ss_pred CCeEEEecCCCCc-cHHHH-HHH-C----CCCeEEEEeCc------HHHHHHH----HHHHHHhCCCCeEE--Eecchhh
Confidence 3489999999993 22222 221 1 34689999863 2233333 2344555664 444 4344444
Q ss_pred cCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEEEEEe
Q 039114 440 IKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLFVHGV 494 (632)
Q Consensus 440 l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vfv~~e 494 (632)
+.. ..+=++++.|+ ++++ +.++..+ +-|+|.-.++..
T Consensus 104 ~~~----~~~fD~I~s~~---~~~~-----------~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 104 FQH----EEQFDVITSRA---LASL-----------NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ccc----cCCccEEEehh---hhCH-----------HHHHHHHHHhcCCCCEEEEE
Confidence 321 11223555554 3322 2355554 447998776543
No 47
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=58.23 E-value=65 Score=35.11 Aligned_cols=136 Identities=21% Similarity=0.366 Sum_probs=71.4
Q ss_pred hhHHHhhHHHHhcccc----CCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHH
Q 039114 343 ASNFLTNRMIGKTTEK----ATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLK 418 (632)
Q Consensus 343 fa~f~ANqaILeA~~g----~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~ 418 (632)
|-+..-..-|-+.+.. ....+|+|+|.|.|. .|......+ + =++.|||.. .+.|+++.+|..
T Consensus 41 fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGG---DL~Kw~~~~---i--~~~vg~Dis------~~si~ea~~Ry~ 106 (331)
T PF03291_consen 41 FNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGG---DLQKWQKAK---I--KHYVGIDIS------EESIEEARERYK 106 (331)
T ss_dssp HHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTT---THHHHHHTT------SEEEEEES-------HHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCch---hHHHHHhcC---C--CEEEEEeCC------HHHHHHHHHHHH
Confidence 3333444445554432 267999999999983 344444332 2 467888863 578999999986
Q ss_pred HHHHhC---CCcEEEEe--ec--ccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEE
Q 039114 419 KAAERC---NVPFEYSA--IA--QKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLF 490 (632)
Q Consensus 419 ~fA~~~---gVpFeF~~--Ia--~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vf 490 (632)
+.-+.. ...+.|.+ +. .-++.|. +.+.-.....=+|+|+|.||+.-... ...| .+|++| +.|+|.-+
T Consensus 107 ~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~-~~~~~~~~~FDvVScQFalHY~Fese---~~ar-~~l~Nvs~~Lk~GG~ 181 (331)
T PF03291_consen 107 QLKKRNNSKQYRFDFIAEFIAADCFSESLR-EKLPPRSRKFDVVSCQFALHYAFESE---EKAR-QFLKNVSSLLKPGGY 181 (331)
T ss_dssp HHHTSTT-HTSEECCEEEEEESTTCCSHHH-CTSSSTTS-EEEEEEES-GGGGGSSH---HHHH-HHHHHHHHTEEEEEE
T ss_pred Hhccccccccccccchhheeccccccchhh-hhccccCCCcceeehHHHHHHhcCCH---HHHH-HHHHHHHHhcCCCCE
Confidence 554321 12233332 22 1111111 11222235788999999999986421 1233 455555 67899865
Q ss_pred EE-EeecC
Q 039114 491 VH-GVANG 497 (632)
Q Consensus 491 v~-~e~n~ 497 (632)
.+ +.+++
T Consensus 182 FIgT~~d~ 189 (331)
T PF03291_consen 182 FIGTTPDS 189 (331)
T ss_dssp EEEEEE-H
T ss_pred EEEEecCH
Confidence 44 44444
No 48
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=56.69 E-value=1.8e+02 Score=31.89 Aligned_cols=99 Identities=12% Similarity=0.135 Sum_probs=50.6
Q ss_pred CeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccc
Q 039114 360 TKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWET 439 (632)
Q Consensus 360 ~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~ 439 (632)
...+|+|+|.+.|.-.. .|+.+-++ .++|+||.. .+.++.+.++.. .-++.| +...+++
T Consensus 113 ~~~~VLDLGcGtG~~~l----~La~~~~~---~~VtgVD~S------~~mL~~A~~k~~----~~~i~~----i~gD~e~ 171 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTL----GIVKHVDA---KNVTILDQS------PHQLAKAKQKEP----LKECKI----IEGDAED 171 (340)
T ss_pred CCCEEEEEecCCcHHHH----HHHHHCCC---CEEEEEECC------HHHHHHHHHhhh----ccCCeE----EeccHHh
Confidence 45689999999996333 33333222 589999863 233444443321 123332 3333333
Q ss_pred cCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEEEE
Q 039114 440 IKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLFVH 492 (632)
Q Consensus 440 l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vfv~ 492 (632)
+...+ ..=.+++.+ ..|+++.| + +.+|+.+ |-|+|.-.++
T Consensus 172 lp~~~---~sFDvVIs~--~~L~~~~d-------~-~~~L~e~~rvLkPGG~Lv 212 (340)
T PLN02490 172 LPFPT---DYADRYVSA--GSIEYWPD-------P-QRGIKEAYRVLKIGGKAC 212 (340)
T ss_pred CCCCC---CceeEEEEc--ChhhhCCC-------H-HHHHHHHHHhcCCCcEEE
Confidence 32111 111344443 44667654 2 3455554 6689986543
No 49
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=53.17 E-value=2.2e+02 Score=28.79 Aligned_cols=110 Identities=14% Similarity=0.247 Sum_probs=64.6
Q ss_pred HHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEE
Q 039114 350 RMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFE 429 (632)
Q Consensus 350 qaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFe 429 (632)
..|++|+.--+.-.++|+|-|.|.- ---||.+ | ..+|++|.. ...+ ..|.+.|++-+++.+
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRN----alyLA~~-G----~~VtAvD~s------~~al----~~l~~~a~~~~l~i~ 80 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRN----ALYLASQ-G----FDVTAVDIS------PVAL----EKLQRLAEEEGLDIR 80 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHH----HHHHHHT-T-----EEEEEESS------HHHH----HHHHHHHHHTT-TEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHH----HHHHHHC-C----CeEEEEECC------HHHH----HHHHHHHhhcCceeE
Confidence 4466776655566889999999931 1125554 2 789999963 2223 347778888999966
Q ss_pred EEeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHh-hCCCEEEE
Q 039114 430 YSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKR-INPDLFVH 492 (632)
Q Consensus 430 F~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~-L~P~Vfv~ 492 (632)
..... ++ +..+. ++.=+|.+..-|++|..+ -++.+++.|++ ++|.-+.+
T Consensus 81 ~~~~D--l~-----~~~~~-~~yD~I~st~v~~fL~~~------~~~~i~~~m~~~~~pGG~~l 130 (192)
T PF03848_consen 81 TRVAD--LN-----DFDFP-EEYDFIVSTVVFMFLQRE------LRPQIIENMKAATKPGGYNL 130 (192)
T ss_dssp EEE-B--GC-----CBS-T-TTEEEEEEESSGGGS-GG------GHHHHHHHHHHTEEEEEEEE
T ss_pred EEEec--ch-----hcccc-CCcCEEEEEEEeccCCHH------HHHHHHHHHHhhcCCcEEEE
Confidence 54432 22 22332 345566677777888654 25677777754 78975543
No 50
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=52.70 E-value=47 Score=34.74 Aligned_cols=56 Identities=14% Similarity=0.274 Sum_probs=37.0
Q ss_pred hcCcchhhhH-HHhhHHHHh----ccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCC
Q 039114 336 SASPFRKASN-FLTNRMIGK----TTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELP 400 (632)
Q Consensus 336 ~~~Pf~kfa~-f~ANqaILe----A~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p 400 (632)
...|=.++++ |..|+.|++ .+.-.+.-+|+|+|-|.| .+...|+.+ ++ ++|||+..
T Consensus 13 ~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G----~lt~~L~~~--~~---~v~avE~d 73 (272)
T PRK00274 13 GHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLG----ALTEPLLER--AA---KVTAVEID 73 (272)
T ss_pred CCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCcc----HHHHHHHHh--CC---cEEEEECC
Confidence 4466666666 556655554 333344568999999998 466667766 22 89999863
No 51
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=51.20 E-value=1.3e+02 Score=33.44 Aligned_cols=110 Identities=11% Similarity=0.062 Sum_probs=58.7
Q ss_pred EEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccccCc
Q 039114 363 HIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIKL 442 (632)
Q Consensus 363 HIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~l~~ 442 (632)
+|+|+|-|.|. +--.|+.+. |..+||+||.. ...++-+.+.+......-...++|..- .-++.+
T Consensus 231 ~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S------~~Av~~A~~N~~~n~~~~~~~v~~~~~-D~l~~~-- 294 (378)
T PRK15001 231 EIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDES------PMAVASSRLNVETNMPEALDRCEFMIN-NALSGV-- 294 (378)
T ss_pred eEEEEeccccH----HHHHHHHhC---CCCEEEEEECC------HHHHHHHHHHHHHcCcccCceEEEEEc-cccccC--
Confidence 79999999995 333455543 56899999973 345666655554332110012344321 111211
Q ss_pred ccccCCCCceEEEEeecccCCCCCCcccccchHHHHHH-HHHhhCCCEEEEEeec
Q 039114 443 DDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLR-LIKRINPDLFVHGVAN 496 (632)
Q Consensus 443 e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~-~Ir~L~P~Vfv~~e~n 496 (632)
.-..=++|+.|-.|+-.+-..+. -...+++ .-+.|+|.-.+..+.|
T Consensus 295 ---~~~~fDlIlsNPPfh~~~~~~~~-----ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 295 ---EPFRFNAVLCNPPFHQQHALTDN-----VAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred ---CCCCEEEEEECcCcccCccCCHH-----HHHHHHHHHHHhcccCCEEEEEEe
Confidence 11123577778777654432211 1233444 4467899976665543
No 52
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=47.06 E-value=86 Score=30.85 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=22.6
Q ss_pred eEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecC
Q 039114 362 VHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIEL 399 (632)
Q Consensus 362 VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~ 399 (632)
--|+|+|.|.| .++-.||.+. |...++||+.
T Consensus 18 ~~ilDiGcG~G----~~~~~la~~~---p~~~v~gvD~ 48 (194)
T TIGR00091 18 PLHLEIGCGKG----RFLIDMAKQN---PDKNFLGIEI 48 (194)
T ss_pred ceEEEeCCCcc----HHHHHHHHhC---CCCCEEEEEe
Confidence 36999999988 3444555543 5578999996
No 53
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=46.31 E-value=2e+02 Score=29.50 Aligned_cols=98 Identities=17% Similarity=0.357 Sum_probs=49.9
Q ss_pred eEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-EEEEeeccccccc
Q 039114 362 VHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVP-FEYSAIAQKWETI 440 (632)
Q Consensus 362 VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVp-FeF~~Ia~~~E~l 440 (632)
=+|+|+|.+-|. |..++ +... | +.-+|||||.. .+.++.+.++. +.++++ .+| +...++.+
T Consensus 79 ~~VLDiG~G~G~-~~~~~---a~~~-g-~~~~v~gvD~s------~~~l~~A~~~~----~~~g~~~v~~--~~~d~~~l 140 (272)
T PRK11873 79 ETVLDLGSGGGF-DCFLA---ARRV-G-PTGKVIGVDMT------PEMLAKARANA----RKAGYTNVEF--RLGEIEAL 140 (272)
T ss_pred CEEEEeCCCCCH-HHHHH---HHHh-C-CCCEEEEECCC------HHHHHHHHHHH----HHcCCCCEEE--EEcchhhC
Confidence 389999999884 22222 2221 2 44589999863 23444444332 334543 233 22334333
Q ss_pred CcccccCCCC--ceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCEEE
Q 039114 441 KLDDLKIDRD--EVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFV 491 (632)
Q Consensus 441 ~~e~L~i~~~--E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vfv 491 (632)
. +..+ .+|+.||++ |+..+ +...+=...|-|+|.-.+
T Consensus 141 ~-----~~~~~fD~Vi~~~v~--~~~~d-------~~~~l~~~~r~LkpGG~l 179 (272)
T PRK11873 141 P-----VADNSVDVIISNCVI--NLSPD-------KERVFKEAFRVLKPGGRF 179 (272)
T ss_pred C-----CCCCceeEEEEcCcc--cCCCC-------HHHHHHHHHHHcCCCcEE
Confidence 2 2222 345556654 55544 233444456778998543
No 54
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=46.20 E-value=1.9e+02 Score=31.36 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=25.3
Q ss_pred HHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecC
Q 039114 351 MIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIEL 399 (632)
Q Consensus 351 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~ 399 (632)
+|+..+..-+.-+|+|+|-|.|. ++..++.+ |+ -+++|||+
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~--~~v~GiDp 152 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA--KSLVGIDP 152 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC--CEEEEEcC
Confidence 34554433333489999999995 34444433 33 27899985
No 55
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=45.72 E-value=1e+02 Score=30.37 Aligned_cols=99 Identities=17% Similarity=0.297 Sum_probs=50.8
Q ss_pred CeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCC--cEEEEeecccc
Q 039114 360 TKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNV--PFEYSAIAQKW 437 (632)
Q Consensus 360 ~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gV--pFeF~~Ia~~~ 437 (632)
...+|+|+|-+.|.- ...|+.+ + .++||||.. ...++.+.+++. ..++ ...|... .+
T Consensus 63 ~~~~vLDvGcG~G~~----~~~l~~~--~---~~v~~~D~s------~~~i~~a~~~~~----~~~~~~~i~~~~~--d~ 121 (230)
T PRK07580 63 TGLRILDAGCGVGSL----SIPLARR--G---AKVVASDIS------PQMVEEARERAP----EAGLAGNITFEVG--DL 121 (230)
T ss_pred CCCEEEEEeCCCCHH----HHHHHHc--C---CEEEEEECC------HHHHHHHHHHHH----hcCCccCcEEEEc--Cc
Confidence 456899999999953 3345543 2 349999963 334555554443 2333 2344332 12
Q ss_pred cccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCEEEEE
Q 039114 438 ETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVHG 493 (632)
Q Consensus 438 E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vfv~~ 493 (632)
+.. .+..=+|-|...|+|+.++. ...+++.+.++.+..+++.
T Consensus 122 ~~~--------~~~fD~v~~~~~l~~~~~~~------~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 122 ESL--------LGRFDTVVCLDVLIHYPQED------AARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhc--------cCCcCEEEEcchhhcCCHHH------HHHHHHHHHhhcCCeEEEE
Confidence 211 11111222444566765432 3567777766655544443
No 56
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=45.37 E-value=50 Score=34.61 Aligned_cols=111 Identities=20% Similarity=0.316 Sum_probs=67.2
Q ss_pred cccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecc
Q 039114 356 TEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQ 435 (632)
Q Consensus 356 ~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~ 435 (632)
+.-+.---|+|+|.|-|-+=-- |+.|= |--.|||||.. .+.|+++.+||- ++.|+
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTel----L~~Rw---P~A~i~GiDsS------~~Mla~Aa~rlp------~~~f~------ 80 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTEL----LARRW---PDAVITGIDSS------PAMLAKAAQRLP------DATFE------ 80 (257)
T ss_pred CCccccceeeecCCCCCHHHHH----HHHhC---CCCeEeeccCC------HHHHHHHHHhCC------CCcee------
Confidence 3344556799999999965443 44453 45689999863 456666665554 33333
Q ss_pred cccccCcccccCC-CCceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCEEEEEeecCCCCCCc
Q 039114 436 KWETIKLDDLKID-RDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVHGVANGTYNSPF 503 (632)
Q Consensus 436 ~~E~l~~e~L~i~-~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vfv~~e~n~~~nsp~ 503 (632)
.-++.+++-. +-.+|.-|.+|+. |+|.. +.+-+++-.|.|.-++-+-.-.++..|.
T Consensus 81 ---~aDl~~w~p~~~~dllfaNAvlqW--lpdH~-------~ll~rL~~~L~Pgg~LAVQmPdN~deps 137 (257)
T COG4106 81 ---EADLRTWKPEQPTDLLFANAVLQW--LPDHP-------ELLPRLVSQLAPGGVLAVQMPDNLDEPS 137 (257)
T ss_pred ---cccHhhcCCCCccchhhhhhhhhh--ccccH-------HHHHHHHHhhCCCceEEEECCCccCchh
Confidence 1122222221 2345666776544 66642 4677788999999887655555666554
No 57
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=44.08 E-value=1.9e+02 Score=31.96 Aligned_cols=106 Identities=13% Similarity=0.279 Sum_probs=54.4
Q ss_pred HHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEE
Q 039114 351 MIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEY 430 (632)
Q Consensus 351 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF 430 (632)
.|++.+.-...-+|+|+|.|.|. +...|+.+.| .++|||+.. .+.++.+.++.. ++.++|
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS------~~~l~~A~~~~~------~l~v~~ 217 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTIS------AEQQKLAQERCA------GLPVEI 217 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCC------HHHHHHHHHHhc------cCeEEE
Confidence 44444433334489999987773 4455665543 489999863 344555444431 333443
Q ss_pred EeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEEEE
Q 039114 431 SAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLFVH 492 (632)
Q Consensus 431 ~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vfv~ 492 (632)
.. ..+.++ . ..=+.| -+...++|+.++ ..+.+++.+ +-|+|.-.++
T Consensus 218 ~~--~D~~~l-----~-~~fD~I--vs~~~~ehvg~~------~~~~~l~~i~r~LkpGG~lv 264 (383)
T PRK11705 218 RL--QDYRDL-----N-GQFDRI--VSVGMFEHVGPK------NYRTYFEVVRRCLKPDGLFL 264 (383)
T ss_pred EE--Cchhhc-----C-CCCCEE--EEeCchhhCChH------HHHHHHHHHHHHcCCCcEEE
Confidence 22 222222 1 111233 233455676542 124556555 5689986543
No 58
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=43.97 E-value=3.4e+02 Score=29.68 Aligned_cols=105 Identities=20% Similarity=0.236 Sum_probs=57.8
Q ss_pred EEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccccCc
Q 039114 363 HIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIKL 442 (632)
Q Consensus 363 HIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~l~~ 442 (632)
+|+|+|-|.|. +-..|+.+. |..++|+||.. ...++.+.+++.. .++..++... .. +
T Consensus 199 ~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis------~~Al~~A~~nl~~----n~l~~~~~~~--D~--~-- 255 (342)
T PRK09489 199 KVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVS------AAALESSRATLAA----NGLEGEVFAS--NV--F-- 255 (342)
T ss_pred eEEEeccCcCH----HHHHHHHhC---CCCEEEEEECC------HHHHHHHHHHHHH----cCCCCEEEEc--cc--c--
Confidence 69999999996 444455442 45789999973 3556666555543 3555554321 11 1
Q ss_pred ccccCCCCceEEEEeecccCCCCCCcccccchHHHHHH-HHHhhCCCEEEEEeec
Q 039114 443 DDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLR-LIKRINPDLFVHGVAN 496 (632)
Q Consensus 443 e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~-~Ir~L~P~Vfv~~e~n 496 (632)
+.+ -.+=++++.|-.| |.-.+.. .. ....+++ ..+.|+|.-.+..+.|
T Consensus 256 ~~~-~~~fDlIvsNPPF--H~g~~~~--~~-~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 256 SDI-KGRFDMIISNPPF--HDGIQTS--LD-AAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccc-CCCccEEEECCCc--cCCcccc--HH-HHHHHHHHHHHhcCcCCEEEEEEe
Confidence 111 1223577777655 4332211 11 1234444 4566899976655554
No 59
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=41.01 E-value=3.8e+02 Score=26.69 Aligned_cols=97 Identities=12% Similarity=0.215 Sum_probs=51.9
Q ss_pred eeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-EEEEeecccccc
Q 039114 361 KVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVP-FEYSAIAQKWET 439 (632)
Q Consensus 361 ~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVp-FeF~~Ia~~~E~ 439 (632)
.-.|+|+|-+.|. .++ .++.+. |..++||||.. .+.++.+. +.++..+++ ++|.. ...++
T Consensus 46 g~~VLDiGcGtG~--~al--~la~~~---~~~~V~giD~s------~~~l~~A~----~~~~~~~l~~i~~~~--~d~~~ 106 (187)
T PRK00107 46 GERVLDVGSGAGF--PGI--PLAIAR---PELKVTLVDSL------GKKIAFLR----EVAAELGLKNVTVVH--GRAEE 106 (187)
T ss_pred CCeEEEEcCCCCH--HHH--HHHHHC---CCCeEEEEeCc------HHHHHHHH----HHHHHcCCCCEEEEe--ccHhh
Confidence 3479999999993 222 222221 34699999863 23344443 334445664 44433 33333
Q ss_pred cCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHH-HHhhCCCEEEEEe
Q 039114 440 IKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRL-IKRINPDLFVHGV 494 (632)
Q Consensus 440 l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~-Ir~L~P~Vfv~~e 494 (632)
+.. -.+-++++.|+. . +.+.+++. .+.|+|.-.++..
T Consensus 107 ~~~----~~~fDlV~~~~~-------------~-~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 107 FGQ----EEKFDVVTSRAV-------------A-SLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CCC----CCCccEEEEccc-------------c-CHHHHHHHHHHhcCCCeEEEEE
Confidence 322 123346666531 1 23456665 4789999776654
No 60
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=40.50 E-value=2.8e+02 Score=27.95 Aligned_cols=106 Identities=9% Similarity=0.037 Sum_probs=57.3
Q ss_pred eEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccccC
Q 039114 362 VHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIK 441 (632)
Q Consensus 362 VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~l~ 441 (632)
-.|+|+|-|.| .--|.+|+.. . -+||+|+.. .+.++.+.+. ++..|+. ....+...+...-
T Consensus 55 ~~vLDl~~GsG---~l~l~~lsr~---a--~~V~~vE~~------~~a~~~a~~N----l~~~~~~-~v~~~~~D~~~~l 115 (199)
T PRK10909 55 ARCLDCFAGSG---ALGLEALSRY---A--AGATLLEMD------RAVAQQLIKN----LATLKAG-NARVVNTNALSFL 115 (199)
T ss_pred CEEEEcCCCcc---HHHHHHHHcC---C--CEEEEEECC------HHHHHHHHHH----HHHhCCC-cEEEEEchHHHHH
Confidence 36899999998 3334556642 2 489999863 2333333333 3344443 2222322222110
Q ss_pred cccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHh---hCCCEEEEEeecCCC
Q 039114 442 LDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKR---INPDLFVHGVANGTY 499 (632)
Q Consensus 442 ~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~---L~P~Vfv~~e~n~~~ 499 (632)
. ... .+=++|++|=.|+- .-...++..|.. ++|+-+|.++.+...
T Consensus 116 ~-~~~-~~fDlV~~DPPy~~-----------g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~ 163 (199)
T PRK10909 116 A-QPG-TPHNVVFVDPPFRK-----------GLLEETINLLEDNGWLADEALIYVESEVEN 163 (199)
T ss_pred h-hcC-CCceEEEECCCCCC-----------ChHHHHHHHHHHCCCcCCCcEEEEEecCCC
Confidence 0 011 12357888866641 113567888877 689988887766543
No 61
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=40.10 E-value=56 Score=30.55 Aligned_cols=39 Identities=21% Similarity=0.493 Sum_probs=26.9
Q ss_pred ccCCeeEEEEcccccccccHHHHHHHhcC--CCCCCeEEEeeecCC
Q 039114 357 EKATKVHIIDFGISYGFQWPCFIQRQSFR--PGGPPKIRITGIELP 400 (632)
Q Consensus 357 ~g~~~VHIIDfgI~~G~QWP~Liq~La~R--~gGPP~LRITgI~~p 400 (632)
...+..+|||||-|.|. |=+.|+.. .- .|.++|+|||..
T Consensus 22 ~~~~~~~vvD~GsG~Gy----Ls~~La~~l~~~-~~~~~v~~iD~~ 62 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGY----LSRALAHLLCNS-SPNLRVLGIDCN 62 (141)
T ss_pred ccCCCCEEEEeCCChhH----HHHHHHHHHHhc-CCCCeEEEEECC
Confidence 44678999999999994 33334330 01 277999999963
No 62
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=37.75 E-value=1.6e+02 Score=28.15 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=27.9
Q ss_pred HHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCC
Q 039114 351 MIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELP 400 (632)
Q Consensus 351 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p 400 (632)
.|++.+.-...-+|+|+|-|.|. |...|+.+ + -++|+|+..
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~ 44 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEID 44 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECC
Confidence 45565543334489999999884 55566666 2 389999973
No 63
>PRK06922 hypothetical protein; Provisional
Probab=37.53 E-value=2.1e+02 Score=34.47 Aligned_cols=108 Identities=12% Similarity=0.215 Sum_probs=55.5
Q ss_pred eEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccccC
Q 039114 362 VHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIK 441 (632)
Q Consensus 362 VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~l~ 441 (632)
-.|+|+|.|.|. ++..|+.+. |..++||||.+ ...++.+.+++. ..+.++++ +.....++.
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS------~~MLe~Ararl~----~~g~~ie~--I~gDa~dLp 480 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDIS------ENVIDTLKKKKQ----NEGRSWNV--IKGDAINLS 480 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECC------HHHHHHHHHHhh----hcCCCeEE--EEcchHhCc
Confidence 479999999993 445566542 46899999974 334555544432 23455444 222221111
Q ss_pred cccccCCCCceEEEEeecccCCCCC----Ccc--cccchHHHHHHHHHhhCCCEEE
Q 039114 442 LDDLKIDRDEVTVVTCMYRLNYLPD----DTQ--VKDSLRDAVLRLIKRINPDLFV 491 (632)
Q Consensus 442 ~e~L~i~~~E~LaVN~~~~L~~L~d----e~v--~~~spRd~vL~~Ir~L~P~Vfv 491 (632)
+ .+.++.+=+|-+.+-+|++.+ +.. ....+...+-+..+.|+|.-.+
T Consensus 481 --~-~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrL 533 (677)
T PRK06922 481 --S-SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRI 533 (677)
T ss_pred --c-ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEE
Confidence 0 123343444445556676532 110 0112233334445789998543
No 64
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=37.02 E-value=2e+02 Score=28.44 Aligned_cols=99 Identities=15% Similarity=0.247 Sum_probs=51.1
Q ss_pred EEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccccCc
Q 039114 363 HIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIKL 442 (632)
Q Consensus 363 HIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~l~~ 442 (632)
+|+|+|-+.|. +...|+.+- |..++|||+.. .+.++...+++ +..|+.-....+....+....
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s------~~~~~~a~~~~----~~~gl~~~i~~~~~d~~~~~~ 64 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTIS------PEQAEVGRERI----RALGLQGRIRIFYRDSAKDPF 64 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECC------HHHHHHHHHHH----HhcCCCcceEEEecccccCCC
Confidence 68999988884 344555443 34689999862 34445444443 333554333323222211111
Q ss_pred ccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEEEE
Q 039114 443 DDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLFVH 492 (632)
Q Consensus 443 e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vfv~ 492 (632)
. ..=++ |-+...++|+.+ ...+|+.+ +-|+|.-.++
T Consensus 65 ~----~~fD~--I~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~ 101 (224)
T smart00828 65 P----DTYDL--VFGFEVIHHIKD--------KMDLFSNISRHLKDGGHLV 101 (224)
T ss_pred C----CCCCE--eehHHHHHhCCC--------HHHHHHHHHHHcCCCCEEE
Confidence 1 11122 334455677643 24666666 5589996544
No 65
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=36.50 E-value=70 Score=36.82 Aligned_cols=63 Identities=24% Similarity=0.355 Sum_probs=46.9
Q ss_pred cccCCCCCCcccccchHHHHHHHHHhhCCCEEEE--E-e-----ecCCCCCCchHHHHHHHHHHHHHHHHHHhh
Q 039114 459 YRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVH--G-V-----ANGTYNSPFFVSRFKEAMFHFSALFDMLEA 524 (632)
Q Consensus 459 ~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vfv~--~-e-----~n~~~nsp~F~~RF~EAL~yYsAlFDsLda 524 (632)
-|.|++..+.+ --|-.+|+.+|+.+|++=|. . + .+++...|..-..+...++.|+.|.|-.+.
T Consensus 77 SR~~~~~~~~~---~~rl~~l~~lk~~~p~~~iyaf~~ImR~~~~~~~~eep~yy~~yg~~i~~~~~l~dk~~~ 147 (497)
T PF13552_consen 77 SRIHHLSLEEA---LERLERLRELKARNPNLPIYAFSTIMRTPPYSSSDEEPDYYADYGRKIFRYSQLLDKEEG 147 (497)
T ss_pred hcCCCCCHHHH---HHHHHHHHHHHHHCCCCeEEEEEEEeccCCCCCCCCCcHHHHHHHHHHHHHHHhhhhhhh
Confidence 36777765543 24678899999999995332 2 2 234566788899999999999999999884
No 66
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=32.85 E-value=2.6e+02 Score=31.52 Aligned_cols=157 Identities=19% Similarity=0.211 Sum_probs=85.2
Q ss_pred hhHHHhhHHHHhccccCCeeEEEEcccccc-cccHHHHHHHhc--------CCCCCCeEEEeeecCCCCCCCChHHHHHH
Q 039114 343 ASNFLTNRMIGKTTEKATKVHIIDFGISYG-FQWPCFIQRQSF--------RPGGPPKIRITGIELPEPGFRPAERVEET 413 (632)
Q Consensus 343 fa~f~ANqaILeA~~g~~~VHIIDfgI~~G-~QWP~Liq~La~--------R~gGPP~LRITgI~~p~~gfrp~e~leeT 413 (632)
|+.+.||...-. -.+|-|||.|+|+- .-=|..|- |+. +...|++...-|.-.|+.. |...+ .-
T Consensus 89 Lt~~LaN~~l~r----G~~v~iiDaDvGQ~ei~pPg~IS-L~~~~s~~~~L~~l~~~~~~FvG~isP~~~--~~~~i-~~ 160 (398)
T COG1341 89 LTTYLANKLLAR----GRKVAIIDADVGQSEIGPPGFIS-LAFPESPVISLSELEPFTLYFVGSISPQGF--PGRYI-AG 160 (398)
T ss_pred HHHHHHHHHhhc----CceEEEEeCCCCCcccCCCceEE-eecccCCCCCHHHcCccceEEEeccCCCCC--hHHHH-HH
Confidence 344557765432 45699999998853 22222221 111 1235667777777777652 33333 34
Q ss_pred HHHHHHHHHhCCCcEEEEeecccccccCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCEEEEE
Q 039114 414 GHRLKKAAERCNVPFEYSAIAQKWETIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVHG 493 (632)
Q Consensus 414 GrRL~~fA~~~gVpFeF~~Ia~~~E~l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vfv~~ 493 (632)
-.||.++|++. -++++||+.-.. .--..++--...|...+|+.++..
T Consensus 161 v~rL~~~a~~~-------------------------~~~ilIdT~GWi--------~G~~g~elk~~li~~ikP~~Ii~l 207 (398)
T COG1341 161 VARLVDLAKKE-------------------------ADFILIDTDGWI--------KGWGGLELKRALIDAIKPDLIIAL 207 (398)
T ss_pred HHHHHHHhhcc-------------------------CCEEEEcCCCce--------eCchHHHHHHHHHhhcCCCEEEEe
Confidence 46888888754 124466643221 111345667778999999999876
Q ss_pred eecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhHhHhh
Q 039114 494 VANGTYNSPFFVSRFKEAMFHFSALFDMLEATVPTEDQGRLIYEREVFGRHAMN 547 (632)
Q Consensus 494 e~n~~~nsp~F~~RF~EAL~yYsAlFDsLda~~pr~~~eR~~iEr~~~greI~N 547 (632)
+... ...++-+=.+...| ....|+..++.-.||...=.+-+.|.+.+
T Consensus 208 ~~~~---~~~~l~~~~~~~~~----~~~~~~~~~~sR~ER~~~R~e~~~ryf~~ 254 (398)
T COG1341 208 ERAN---ELSPLLEGVESIVY----LKVPDAVAPRSREERKELREEKYRRYFEG 254 (398)
T ss_pred cccc---ccchhhhcccCceE----EeccccccccChhHHHHHHHHHHHHhccC
Confidence 6543 22223333333333 23334555666666655433445666544
No 67
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=31.28 E-value=1.9e+02 Score=29.92 Aligned_cols=70 Identities=9% Similarity=0.314 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCcchhhhHHHhhHHHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCC
Q 039114 325 ADVLKAYIVYISASPFRKASNFLTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELP 400 (632)
Q Consensus 325 ~~~lkAy~~f~~~~Pf~kfa~f~ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p 400 (632)
.++.+|.+.|.+.-=|..+....+ ..|.+.+. ...-+|+|+|.|.|.--..|.+.+... ....++|||..
T Consensus 52 ~~~~~ar~~fl~~g~y~~l~~~i~-~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s 121 (272)
T PRK11088 52 KEMMQARRAFLDAGHYQPLRDAVA-NLLAERLD-EKATALLDIGCGEGYYTHALADALPEI----TTMQLFGLDIS 121 (272)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHH-HHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCC
Confidence 455666665555433332222221 22323322 234579999999996444444433211 12579999973
No 68
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=31.14 E-value=2.6e+02 Score=28.08 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=41.4
Q ss_pred CeeEE-EEccc---cccccc---HHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhC----CCcE
Q 039114 360 TKVHI-IDFGI---SYGFQW---PCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERC----NVPF 428 (632)
Q Consensus 360 ~~VHI-IDfgI---~~G~QW---P~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~----gVpF 428 (632)
-+||| ||=|. .+|+.+ +.+++.+... |.|+|.||-.--+.....+...+.-+++.++++.+ |+++
T Consensus 117 ~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~~~----~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 192 (222)
T cd00635 117 LDVLVQVNIGGEESKSGVAPEELEELLEEIAAL----PNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVNL 192 (222)
T ss_pred CcEEEEEecCCCCCCCCCCHHHHHHHHHHHHcC----CCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46898 88884 579854 5555555432 55899998542111112234555666666666665 5766
Q ss_pred EEEee
Q 039114 429 EYSAI 433 (632)
Q Consensus 429 eF~~I 433 (632)
++--+
T Consensus 193 ~~is~ 197 (222)
T cd00635 193 KELSM 197 (222)
T ss_pred CEEEC
Confidence 66544
No 69
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=29.85 E-value=1.8e+02 Score=32.55 Aligned_cols=154 Identities=19% Similarity=0.300 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhCCCcEEEEeecccc-cccCccccc--CCCC-ceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCC
Q 039114 413 TGHRLKKAAERCNVPFEYSAIAQKW-ETIKLDDLK--IDRD-EVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPD 488 (632)
Q Consensus 413 TGrRL~~fA~~~gVpFeF~~Ia~~~-E~l~~e~L~--i~~~-E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~ 488 (632)
-|.|+++.|+++|.+... |...| +.++++++. ++.+ ++=+|-+. | -+-+.-+-+|.+.+=..+|+-.--
T Consensus 91 FG~R~~~ia~~~g~~v~~--~~~~wg~~v~p~~v~~~L~~~~~~~~V~~v---H--~ETSTGvlnpl~~I~~~~k~~g~l 163 (383)
T COG0075 91 FGERFAEIAERYGAEVVV--LEVEWGEAVDPEEVEEALDKDPDIKAVAVV---H--NETSTGVLNPLKEIAKAAKEHGAL 163 (383)
T ss_pred HHHHHHHHHHHhCCceEE--EeCCCCCCCCHHHHHHHHhcCCCccEEEEE---e--ccCcccccCcHHHHHHHHHHcCCE
Confidence 578888888888887554 44446 566666542 3322 22122211 1 111222446788887777776222
Q ss_pred EEE----------------------EEeecCCCCCC------chHHHHHHHHH------HHHHHHHHHhh-----cCCCC
Q 039114 489 LFV----------------------HGVANGTYNSP------FFVSRFKEAMF------HFSALFDMLEA-----TVPTE 529 (632)
Q Consensus 489 Vfv----------------------~~e~n~~~nsp------~F~~RF~EAL~------yYsAlFDsLda-----~~pr~ 529 (632)
++| -+-|-| ..+| .+-.|..|++. ||--|.+.++. ..|-.
T Consensus 164 ~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~-l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~T 242 (383)
T COG0075 164 LIVDAVSSLGGEPLKVDEWGIDVAITGSQKA-LGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYT 242 (383)
T ss_pred EEEEecccCCCcccchhhcCccEEEecCchh-ccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCC
Confidence 222 111111 1122 25567777765 66666555542 22222
Q ss_pred CHHHHHHHHHHH-hHhHhhhhhccC-CCccCCccchhhHH-HHHHhCCCcccc
Q 039114 530 DQGRLIYEREVF-GRHAMNVLACEG-LERIDNPETYRQWQ-SRNLRAGFRQLP 579 (632)
Q Consensus 530 ~~eR~~iEr~~~-greI~NvVAcEG-~eRvER~E~~~qWq-~R~~rAGF~~lp 579 (632)
.+--. +| =++..+.|.-|| ..|.+||.....+- ..++..||+.++
T Consensus 243 ppv~~-----i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~ 290 (383)
T COG0075 243 PPVNL-----IYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFA 290 (383)
T ss_pred CCHHH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 22111 22 246667788899 57999998777654 447778998877
No 70
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=29.70 E-value=65 Score=32.62 Aligned_cols=51 Identities=20% Similarity=0.331 Sum_probs=32.7
Q ss_pred ccccCCeeEEEEcccccc---cccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHH
Q 039114 355 TTEKATKVHIIDFGISYG---FQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAA 421 (632)
Q Consensus 355 A~~g~~~VHIIDfgI~~G---~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA 421 (632)
+++=.+.=|++|+|-+-| .+|. + -.|+.|+++|+- ..+.++-|.+.+.+|.
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a-~---------~~p~~~v~AIe~------~~~a~~~~~~N~~~fg 82 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWA-L---------AGPSGRVIAIER------DEEALELIERNAARFG 82 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHH-H---------hCCCceEEEEec------CHHHHHHHHHHHHHhC
Confidence 333333349999999887 4665 2 137899999984 3456666666555443
No 71
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=28.97 E-value=1.1e+02 Score=30.25 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=45.4
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHhhhcC
Q 039114 254 LSSLLTQCA-QAAASNDQRVAIELSKQIRQHSSPDGDGTQRLAHYFANGLEARLSG 308 (632)
Q Consensus 254 L~~LLl~CA-qAVa~~d~~~A~~lL~~I~q~sSp~Gd~~QRLA~yFaeAL~aRL~g 308 (632)
+.++|+.|. ..+..++...|..+|..|.++..|..+...|+...|.+||-.=+.|
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 455666665 6677889999999999999999888888899999999999765544
No 72
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=27.50 E-value=5.8e+02 Score=25.24 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=23.4
Q ss_pred CeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCC
Q 039114 360 TKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELP 400 (632)
Q Consensus 360 ~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p 400 (632)
+.-.|+|+|-+.|.-...|.+ +. |..+|||||..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~----~~---p~~~v~gVD~s 73 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAK----AN---PDINFIGIEVH 73 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHH----HC---CCccEEEEEec
Confidence 345799999999965444433 31 44689999963
No 73
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=27.45 E-value=72 Score=33.71 Aligned_cols=26 Identities=8% Similarity=-0.055 Sum_probs=18.4
Q ss_pred ccCCeeEEEEcccccccccHHHHHHHhcCC
Q 039114 357 EKATKVHIIDFGISYGFQWPCFIQRQSFRP 386 (632)
Q Consensus 357 ~g~~~VHIIDfgI~~G~QWP~Liq~La~R~ 386 (632)
.|++.|||||+ +.+ ++ .+|..+++-.
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~ 75 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAY 75 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhC
Confidence 48999999999 444 66 5566666543
No 74
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=26.08 E-value=5.5e+02 Score=28.99 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcC---cchhhhHHHhhHHHHhccccCCee---EE-------EEc-----ccccccccHHHHHHHhcCCC
Q 039114 326 DVLKAYIVYISAS---PFRKASNFLTNRMIGKTTEKATKV---HI-------IDF-----GISYGFQWPCFIQRQSFRPG 387 (632)
Q Consensus 326 ~~lkAy~~f~~~~---Pf~kfa~f~ANqaILeA~~g~~~V---HI-------IDf-----gI~~G~QWP~Liq~La~R~g 387 (632)
.++.|+-.-+++. .+...+.-+|+-+|-+.+.+++-. |. -.| --|++|-|..||-.++.|.+
T Consensus 178 Hl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg~~~ePGH~fEW~~Lll~~a~~~~ 257 (388)
T COG2942 178 HLLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRGRGIEPGHQFEWAWLLLDIARRRG 257 (388)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCcccCCCCCchHHHHHHHHHHHHHHhc
Confidence 3445555555554 577788888888888877654321 22 222 13577889999999998754
Q ss_pred CCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeec
Q 039114 388 GPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIA 434 (632)
Q Consensus 388 GPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia 434 (632)
...+.++.++|..-|-..|+.-++-.+.
T Consensus 258 -------------------~~~l~~~A~~lf~~a~~~g~d~~~gg~~ 285 (388)
T COG2942 258 -------------------RAWLIEAARRLFDIAVADGWDPERGGAY 285 (388)
T ss_pred -------------------hhHHHHHHHHHHHHHHHhccCcccCeEE
Confidence 2347788899999998888887776554
No 75
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=25.68 E-value=1.9e+02 Score=25.13 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=21.4
Q ss_pred EEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCC
Q 039114 363 HIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELP 400 (632)
Q Consensus 363 HIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p 400 (632)
+|+|+|.+.|.. ...|+.+. |..++|+||..
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---~~~~v~~vD~s 52 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---PNGRVYAIERN 52 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---CCceEEEEcCC
Confidence 899999999843 33344432 33789999963
No 76
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=25.54 E-value=2.8e+02 Score=24.96 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=25.6
Q ss_pred CceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCEEEEEee
Q 039114 450 DEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVHGVA 495 (632)
Q Consensus 450 ~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vfv~~e~ 495 (632)
+.+-+....|..| |+..++...++.++|+-++=++.
T Consensus 72 ~~~~~~~VPYSeH----------SSf~EL~~Fv~~l~P~~IiPtV~ 107 (110)
T PF07522_consen 72 GNVRIYRVPYSEH----------SSFSELKEFVSFLKPKKIIPTVN 107 (110)
T ss_pred CCceEEEEecccC----------CCHHHHHHHHHhcCCcEEEcccc
Confidence 4455555555555 56778999999999998875443
No 77
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=25.13 E-value=1.2e+02 Score=30.18 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=39.7
Q ss_pred EEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccc
Q 039114 363 HIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWET 439 (632)
Q Consensus 363 HIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~ 439 (632)
.|+|+|-|-|| |.+.=+++. |.+++|-|+.-+ .=-.-|...++.+|++ ..+.+..+.|+
T Consensus 51 ~~lDiGSGaGf--PGipLaI~~-----p~~~~~LvEs~~----------KK~~FL~~~~~~L~L~-nv~v~~~R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAGF--PGIPLAIAR-----PDLQVTLVESVG----------KKVAFLKEVVRELGLS-NVEVINGRAEE 109 (184)
T ss_dssp EEEEETSTTTT--THHHHHHH------TTSEEEEEESSH----------HHHHHHHHHHHHHT-S-SEEEEES-HHH
T ss_pred eEEecCCCCCC--hhHHHHHhC-----CCCcEEEEeCCc----------hHHHHHHHHHHHhCCC-CEEEEEeeecc
Confidence 59999988776 888888875 779999998521 1123466778888887 34445556665
No 78
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=24.97 E-value=1e+03 Score=27.40 Aligned_cols=44 Identities=14% Similarity=0.348 Sum_probs=27.9
Q ss_pred eeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHH
Q 039114 361 KVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRL 417 (632)
Q Consensus 361 ~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL 417 (632)
...|+|+|.|.| .+.-.|+.+- |..++|+||.. ...++.+.+++
T Consensus 139 ~~~VLDlG~GsG----~iai~la~~~---p~~~v~avDis------~~al~~A~~N~ 182 (506)
T PRK01544 139 FLNILELGTGSG----CIAISLLCEL---PNANVIATDIS------LDAIEVAKSNA 182 (506)
T ss_pred CCEEEEccCchh----HHHHHHHHHC---CCCeEEEEECC------HHHHHHHHHHH
Confidence 357999999998 3333454432 34799999973 24455555443
No 79
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=24.92 E-value=81 Score=27.89 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEE
Q 039114 409 RVEETGHRLKKAAERCNVPFE 429 (632)
Q Consensus 409 ~leeTGrRL~~fA~~~gVpFe 429 (632)
.+.+.=.+|.+.|+.-||||+
T Consensus 49 ~V~~sl~kL~~La~~N~v~fe 69 (82)
T PF11020_consen 49 KVMDSLSKLYKLAKENNVSFE 69 (82)
T ss_pred HHHHHHHHHHHHHHHcCCCHH
Confidence 466777899999999999986
No 80
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=24.16 E-value=86 Score=33.30 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=20.7
Q ss_pred ccCCeeEEEEcccccccccHHHHHHHhc
Q 039114 357 EKATKVHIIDFGISYGFQWPCFIQRQSF 384 (632)
Q Consensus 357 ~g~~~VHIIDfgI~~G~QWP~Liq~La~ 384 (632)
.|++.|||||+|-+.+-+ -.+|.+++.
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 489999999998766666 456677765
No 81
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=23.68 E-value=2.7e+02 Score=29.85 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=24.5
Q ss_pred HHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCC
Q 039114 352 IGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELP 400 (632)
Q Consensus 352 ILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p 400 (632)
|++++.-...=.|+|+|-|.|. |-..|+.+. -++++|+..
T Consensus 28 Iv~~~~~~~~~~VLEIG~G~G~----LT~~Ll~~~-----~~V~avEiD 67 (294)
T PTZ00338 28 IVEKAAIKPTDTVLEIGPGTGN----LTEKLLQLA-----KKVIAIEID 67 (294)
T ss_pred HHHhcCCCCcCEEEEecCchHH----HHHHHHHhC-----CcEEEEECC
Confidence 3334333333479999999885 444555442 268999863
No 82
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=22.97 E-value=3.3e+02 Score=28.17 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=23.2
Q ss_pred CeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCC
Q 039114 360 TKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELP 400 (632)
Q Consensus 360 ~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p 400 (632)
+.=+|+|+|-|.|. |...|+.+. .++|||+..
T Consensus 29 ~~~~VLEIG~G~G~----lt~~L~~~~-----~~v~~vEid 60 (258)
T PRK14896 29 DGDPVLEIGPGKGA----LTDELAKRA-----KKVYAIELD 60 (258)
T ss_pred CcCeEEEEeCccCH----HHHHHHHhC-----CEEEEEECC
Confidence 34579999999994 555666652 379999863
No 83
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=22.45 E-value=5.9e+02 Score=23.24 Aligned_cols=76 Identities=20% Similarity=0.140 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhCCCcEE--EEeecccccccCcccc-----cCCCCc--eEEEEeecccCCCCCCcccccchHHHHHH
Q 039114 410 VEETGHRLKKAAERCNVPFE--YSAIAQKWETIKLDDL-----KIDRDE--VTVVTCMYRLNYLPDDTQVKDSLRDAVLR 480 (632)
Q Consensus 410 leeTGrRL~~fA~~~gVpFe--F~~Ia~~~E~l~~e~L-----~i~~~E--~LaVN~~~~L~~L~de~v~~~spRd~vL~ 480 (632)
++.--+.|.+||+..|.++. |.-...+-.......| .+..|+ +|+|-..-+|-+-..+ .-.++.
T Consensus 17 ~~~Q~~~~~~~a~~~g~~i~~~~~d~~~Sg~~~~Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~~~-------~~~~~~ 89 (148)
T smart00857 17 LERQLEALRAYAKANGWEVVRIYEDEGVSGKKADRPGLQRLLADLRAGDIDVLVVYKLDRLGRSLRD-------LLALLE 89 (148)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHcCCCCEEEEeccchhhCcHHH-------HHHHHH
Confidence 44455678899999998753 2222101111111222 256677 8888776666543211 235677
Q ss_pred HHHhhCCCEEEE
Q 039114 481 LIKRINPDLFVH 492 (632)
Q Consensus 481 ~Ir~L~P~Vfv~ 492 (632)
.++..+=.|++.
T Consensus 90 ~l~~~gi~l~~~ 101 (148)
T smart00857 90 LLEKKGVRLVSV 101 (148)
T ss_pred HHHHCCCEEEEC
Confidence 777777555443
No 84
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=22.41 E-value=2.1e+02 Score=21.80 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=22.7
Q ss_pred ceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCEEEE
Q 039114 451 EVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVH 492 (632)
Q Consensus 451 E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vfv~ 492 (632)
|.+-|||....-++.. ..-++.+++.|+.++|+-+++
T Consensus 1 e~i~v~a~v~~~~fSg-----Had~~~L~~~i~~~~p~~vil 37 (43)
T PF07521_consen 1 EMIPVRARVEQIDFSG-----HADREELLEFIEQLNPRKVIL 37 (43)
T ss_dssp CEEE--SEEEESGCSS-----S-BHHHHHHHHHHHCSSEEEE
T ss_pred CEEEeEEEEEEEeecC-----CCCHHHHHHHHHhcCCCEEEE
Confidence 4556776533222432 234789999999999998765
No 85
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=22.25 E-value=2.2e+02 Score=29.34 Aligned_cols=62 Identities=19% Similarity=0.325 Sum_probs=42.5
Q ss_pred eeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-EEEEeecccccc
Q 039114 361 KVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVP-FEYSAIAQKWET 439 (632)
Q Consensus 361 ~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVp-FeF~~Ia~~~E~ 439 (632)
..|++|.|-|-|| |.+.=+++. |.+++|-|+.-. +-. .-|...++++|++ .++.. .+.|+
T Consensus 68 ~~~~~DIGSGaGf--PGipLAI~~-----p~~~vtLles~~---Kk~-------~FL~~~~~eL~L~nv~i~~--~RaE~ 128 (215)
T COG0357 68 AKRVLDIGSGAGF--PGIPLAIAF-----PDLKVTLLESLG---KKI-------AFLREVKKELGLENVEIVH--GRAEE 128 (215)
T ss_pred CCEEEEeCCCCCC--chhhHHHhc-----cCCcEEEEccCc---hHH-------HHHHHHHHHhCCCCeEEeh--hhHhh
Confidence 4799999998886 888777764 668899998632 112 3466677888888 76533 44555
Q ss_pred cC
Q 039114 440 IK 441 (632)
Q Consensus 440 l~ 441 (632)
+.
T Consensus 129 ~~ 130 (215)
T COG0357 129 FG 130 (215)
T ss_pred cc
Confidence 44
No 86
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=22.18 E-value=7.1e+02 Score=28.10 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCCCCC--eEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecc
Q 039114 376 PCFIQRQSFRPGGPP--KIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQ 435 (632)
Q Consensus 376 P~Liq~La~R~gGPP--~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~ 435 (632)
|.||+.|+.+...-+ +|.+--|+. .++++..+.-..++++..|.+++|..-..
T Consensus 14 p~li~~l~~~~~~l~~~ei~L~Did~-------~~rl~~v~~~~~~~~~~~~~~~~v~~t~d 68 (419)
T cd05296 14 PELIEGLIRRYEELPVTELVLVDIDE-------EEKLEIVGALAKRMVKKAGLPIKVHLTTD 68 (419)
T ss_pred HHHHHHHHhccccCCCCEEEEecCCh-------HHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 689999998644333 565555541 36788889889999999999988876543
No 87
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=22.03 E-value=7.5e+02 Score=24.18 Aligned_cols=99 Identities=21% Similarity=0.329 Sum_probs=49.4
Q ss_pred eeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCC-cEEEEeecccccc
Q 039114 361 KVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNV-PFEYSAIAQKWET 439 (632)
Q Consensus 361 ~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gV-pFeF~~Ia~~~E~ 439 (632)
...|+|+|-+.|. +...|+.. + .++|+|+.. ...++...+++. ..++ .+.|... .+++
T Consensus 46 ~~~vLdlG~G~G~----~~~~l~~~--~---~~v~~iD~s------~~~~~~a~~~~~----~~~~~~~~~~~~--d~~~ 104 (224)
T TIGR01983 46 GLRVLDVGCGGGL----LSEPLARL--G---ANVTGIDAS------EENIEVAKLHAK----KDPLLKIEYRCT--SVED 104 (224)
T ss_pred CCeEEEECCCCCH----HHHHHHhc--C---CeEEEEeCC------HHHHHHHHHHHH----HcCCCceEEEeC--CHHH
Confidence 5689999999883 33344432 2 249999863 234555544443 2344 3444322 2222
Q ss_pred cCcccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHH-HhhCCCEEEE
Q 039114 440 IKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLI-KRINPDLFVH 492 (632)
Q Consensus 440 l~~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~I-r~L~P~Vfv~ 492 (632)
+.... -.+-.+++. ...++|..+ |. .+|..+ +.|+|+-+++
T Consensus 105 ~~~~~--~~~~D~i~~--~~~l~~~~~-------~~-~~l~~~~~~L~~gG~l~ 146 (224)
T TIGR01983 105 LAEKG--AKSFDVVTC--MEVLEHVPD-------PQ-AFIRACAQLLKPGGILF 146 (224)
T ss_pred hhcCC--CCCccEEEe--hhHHHhCCC-------HH-HHHHHHHHhcCCCcEEE
Confidence 21111 012234443 344555543 33 455555 6689986554
No 88
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=21.85 E-value=3.2e+02 Score=26.74 Aligned_cols=100 Identities=9% Similarity=0.052 Sum_probs=56.7
Q ss_pred ChHHHHHHHHHHHhcCcchhhhH----HHhhHHHHhccccCCeeEEEEcccccccccHHHHHHHhcCC--CCCCeE--EE
Q 039114 323 SVADVLKAYIVYISASPFRKASN----FLTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRP--GGPPKI--RI 394 (632)
Q Consensus 323 s~~~~lkAy~~f~~~~Pf~kfa~----f~ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~--gGPP~L--RI 394 (632)
+..++..++--.++.+||..-+. |.+-.++++++. ++..++.|...++.|...| |+++.. .+
T Consensus 5 ~~~~f~~~l~~~~e~~~W~~~~~~~RPf~s~~~L~~a~~----------~~~~~~~~~~~~~~l~~HP~lg~~~~~~~~~ 74 (158)
T TIGR03180 5 PADEASATLMECCAIPAWARTLVAARPFASAEALLAAAD----------QAWQNLSEQDLFEALAGHPRIGEKPAGQAAY 74 (158)
T ss_pred CHHHHHHHHHHhccChHHHHHHHHcCCCCCHHHHHHHHH----------HHHHcCCHHHHHHHHHhCCcccCccccccch
Confidence 45566677777777777774222 333445555552 2345677888888888765 343321 11
Q ss_pred eeec-CCCCCCC--ChHHHHHHHHHHHHHHHhCCCcEEEEe
Q 039114 395 TGIE-LPEPGFR--PAERVEETGHRLKKAAERCNVPFEYSA 432 (632)
Q Consensus 395 TgI~-~p~~gfr--p~e~leeTGrRL~~fA~~~gVpFeF~~ 432 (632)
|.-. --|.|.. +.+..++..+-=.+|-++||.||-..+
T Consensus 75 ~~~S~~EQagl~~~~~~~~~~L~~lN~~Y~~kFGfpFii~v 115 (158)
T TIGR03180 75 AATSRREQAGVDGADEETRAALLEGNAAYEEKFGRIFLIRA 115 (158)
T ss_pred hhhhHHHHhcccCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 1110 0122221 234556666666789999999997644
No 89
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=21.84 E-value=7.8e+02 Score=27.85 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCCCCC--eEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeecccccccC
Q 039114 376 PCFIQRQSFRPGGPP--KIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQKWETIK 441 (632)
Q Consensus 376 P~Liq~La~R~gGPP--~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~~E~l~ 441 (632)
|.||+.|..++..-| +|.+--|+ .++++.++....++++..|.+++|..-...=|.++
T Consensus 14 p~li~~l~~~~~~l~~~ei~L~Did--------~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~ 73 (425)
T cd05197 14 PELVSGLLKTPEELPISEVTLYDID--------EERLDIILTIAKRYVEEVGADIKFEKTMDLEDAII 73 (425)
T ss_pred HHHHHHHHcChhhCCCCEEEEEcCC--------HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhC
Confidence 789999999985444 45555554 46788888888889999999988877654333333
No 90
>PRK03646 dadX alanine racemase; Reviewed
Probab=21.81 E-value=1.1e+02 Score=33.36 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=33.6
Q ss_pred CeeEE-EEcccc-cccc---cHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHH
Q 039114 360 TKVHI-IDFGIS-YGFQ---WPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAA 421 (632)
Q Consensus 360 ~~VHI-IDfgI~-~G~Q---WP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA 421 (632)
-+||| ||-|++ .|+. |+.+++.+.. .|.|+|+||-.- |..++....|.+.+.+|.
T Consensus 117 ~~vhLkvDTGM~R~G~~~~e~~~~~~~i~~----~~~l~~~Gi~sH---~a~ad~~~~~~~Q~~~F~ 176 (355)
T PRK03646 117 LDIYLKVNSGMNRLGFQPERVQTVWQQLRA----MGNVGEMTLMSH---FARADHPDGISEAMARIE 176 (355)
T ss_pred eEEEEEeeCCCCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcC---CCCCCCCCHHHHHHHHHH
Confidence 46899 999987 5885 5666666643 356999999542 222222223555555553
No 91
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=21.80 E-value=2.5e+02 Score=29.42 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhHhHhhhhhccCCCccCC-ccchhhHHHHHHhCCCccccCCHHHHHHHHHHHhh
Q 039114 532 GRLIYEREVFGRHAMNVLACEGLERIDN-PETYRQWQSRNLRAGFRQLPVDQELLRRVKKMVKM 594 (632)
Q Consensus 532 eR~~iEr~~~greI~NvVAcEG~eRvER-~E~~~qWq~R~~rAGF~~lpLs~~~~~qak~ll~~ 594 (632)
-|.++|. -.|+|.|+|+..+.+..-+ |-+-..-...|..|||..-|+.+ +-.|+...|+.
T Consensus 92 R~~m~e~--k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Ameeakv~id~~K~-ae~Qv~evlK~ 152 (234)
T COG1500 92 RREMLEE--KKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKVHIDPFKS-AEEQVQEVLKA 152 (234)
T ss_pred HHHHHHH--HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCCC-HHHHHHHHHHH
Confidence 3566776 3899999999999876654 66666777889999999999875 45666655543
No 92
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=21.59 E-value=6e+02 Score=26.04 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=27.3
Q ss_pred HHHhccccCCeeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecC
Q 039114 351 MIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIEL 399 (632)
Q Consensus 351 aILeA~~g~~~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~ 399 (632)
.|++++...+.=.|+|+|-|.|. |...|+.+. + ++++|+.
T Consensus 20 ~i~~~~~~~~~~~VLEiG~G~G~----lt~~L~~~~--~---~v~~iE~ 59 (253)
T TIGR00755 20 KIVEAANVLEGDVVLEIGPGLGA----LTEPLLKRA--K---KVTAIEI 59 (253)
T ss_pred HHHHhcCCCCcCEEEEeCCCCCH----HHHHHHHhC--C---cEEEEEC
Confidence 44455544455689999999995 666666553 2 3999986
No 93
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=21.18 E-value=53 Score=36.54 Aligned_cols=14 Identities=50% Similarity=0.997 Sum_probs=11.6
Q ss_pred ccCCeeEEEEcccc
Q 039114 357 EKATKVHIIDFGIS 370 (632)
Q Consensus 357 ~g~~~VHIIDfgI~ 370 (632)
..+..|||||||+.
T Consensus 163 k~~n~IhiiDFGmA 176 (449)
T KOG1165|consen 163 KDANVIHIIDFGMA 176 (449)
T ss_pred CCCceEEEEeccch
Confidence 45678999999975
No 94
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=20.86 E-value=3.1e+02 Score=27.36 Aligned_cols=32 Identities=19% Similarity=0.484 Sum_probs=22.4
Q ss_pred eeEEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecC
Q 039114 361 KVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIEL 399 (632)
Q Consensus 361 ~VHIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~ 399 (632)
..+|+|+|.|.| .+...|+.+. |..++||||.
T Consensus 88 ~~~ilDig~G~G----~~~~~l~~~~---~~~~v~~iD~ 119 (251)
T TIGR03534 88 PLRVLDLGTGSG----AIALALAKER---PDARVTAVDI 119 (251)
T ss_pred CCeEEEEeCcHh----HHHHHHHHHC---CCCEEEEEEC
Confidence 458999999999 3334444432 4569999996
No 95
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=20.77 E-value=1.1e+03 Score=25.89 Aligned_cols=97 Identities=13% Similarity=0.180 Sum_probs=52.7
Q ss_pred EEEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCc-EEEEeecccccccC
Q 039114 363 HIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVP-FEYSAIAQKWETIK 441 (632)
Q Consensus 363 HIIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVp-FeF~~Ia~~~E~l~ 441 (632)
+|+|++-|.| .+--.||.+ + -+++||+.. ...++.+.+.+ +..|+. .+|. ....++..
T Consensus 236 ~vLDL~cG~G----~~~l~la~~-~----~~v~~vE~~------~~av~~a~~N~----~~~~~~~~~~~--~~d~~~~~ 294 (374)
T TIGR02085 236 QMWDLFCGVG----GFGLHCAGP-D----TQLTGIEIE------SEAIACAQQSA----QMLGLDNLSFA--ALDSAKFA 294 (374)
T ss_pred EEEEccCCcc----HHHHHHhhc-C----CeEEEEECC------HHHHHHHHHHH----HHcCCCcEEEE--ECCHHHHH
Confidence 6899999988 233344432 2 379999863 33455544433 344553 4443 33332221
Q ss_pred cccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCCEEEEEe
Q 039114 442 LDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVHGV 494 (632)
Q Consensus 442 ~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~Vfv~~e 494 (632)
.. +. ..-++|++|=.+. . .-..++..|.+++|+-+|.+.
T Consensus 295 ~~-~~-~~~D~vi~DPPr~--G----------~~~~~l~~l~~~~p~~ivyvs 333 (374)
T TIGR02085 295 TA-QM-SAPELVLVNPPRR--G----------IGKELCDYLSQMAPKFILYSS 333 (374)
T ss_pred Hh-cC-CCCCEEEECCCCC--C----------CcHHHHHHHHhcCCCeEEEEE
Confidence 11 11 1235777774321 1 124788889999998776644
No 96
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=20.74 E-value=5.7e+02 Score=27.68 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=24.6
Q ss_pred CeeEE-EEcccc-ccccc---HHHHHHHhcCCCCCCeEEEeee
Q 039114 360 TKVHI-IDFGIS-YGFQW---PCFIQRQSFRPGGPPKIRITGI 397 (632)
Q Consensus 360 ~~VHI-IDfgI~-~G~QW---P~Liq~La~R~gGPP~LRITgI 397 (632)
-+||| ||-|++ .|+.+ ..+++.+.. -|.|+|.||
T Consensus 117 ~~vhlkvDtGm~R~G~~~~e~~~~~~~i~~----~~~l~~~Gi 155 (353)
T cd06815 117 HKIILMVDLGDLREGVLPEDLLDFVEEILK----LPGIELVGI 155 (353)
T ss_pred cceEEEEecCCCccccCHHHHHHHHHHHhC----CCCcEEEec
Confidence 36898 899987 69864 455555533 356999999
No 97
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=20.05 E-value=2e+02 Score=30.99 Aligned_cols=100 Identities=25% Similarity=0.454 Sum_probs=58.0
Q ss_pred EEEcccccccccHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhCCCcEEEEeeccc--ccccC
Q 039114 364 IIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGFRPAERVEETGHRLKKAAERCNVPFEYSAIAQK--WETIK 441 (632)
Q Consensus 364 IIDfgI~~G~QWP~Liq~La~R~gGPP~LRITgI~~p~~gfrp~e~leeTGrRL~~fA~~~gVpFeF~~Ia~~--~E~l~ 441 (632)
|+|+|-|-|. |=+-|| |.| --|||||.. .+.++.+... +.++.+.+ .+|+-+ .++..
T Consensus 93 ilDvGCGgGL----LSepLA-rlg----a~V~GID~s------~~~V~vA~~h-----~~~dP~~~-~~~~y~l~~~~~~ 151 (282)
T KOG1270|consen 93 ILDVGCGGGL----LSEPLA-RLG----AQVTGIDAS------DDMVEVANEH-----KKMDPVLE-GAIAYRLEYEDTD 151 (282)
T ss_pred EEEeccCccc----cchhhH-hhC----CeeEeeccc------HHHHHHHHHh-----hhcCchhc-cccceeeehhhcc
Confidence 9999999883 223354 443 578999863 3444444322 22222222 222212 23333
Q ss_pred cccccCCCCceEEEEeecccCCCCCCcccccchHHHHHHHHHhhCCC--EEEEEe
Q 039114 442 LDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPD--LFVHGV 494 (632)
Q Consensus 442 ~e~L~i~~~E~LaVN~~~~L~~L~de~v~~~spRd~vL~~Ir~L~P~--Vfv~~e 494 (632)
.+++. +..=||-|+--|+|..| |.+-.-.+++.++|. +|+-++
T Consensus 152 ~E~~~---~~fDaVvcsevleHV~d-------p~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 152 VEGLT---GKFDAVVCSEVLEHVKD-------PQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred hhhcc---cccceeeeHHHHHHHhC-------HHHHHHHHHHHhCCCCceEeeeh
Confidence 44432 44668889999999865 556666678999997 455433
Done!