BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039116
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 99/210 (47%), Gaps = 10/210 (4%)
Query: 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGXXXXXXXXXXXXXXXQ--FKGQIPGTIGDLL 59
LPE++ +LS L L + +N F G I F G+IP T+ +
Sbjct: 356 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 415
Query: 60 KLQRLTLQGNKFLGEIPPSIGNXXXXXXXNFGENMLEESIPSSLGKCQNIALLDLSNNNL 119
+L L L N G IP S+G+ NMLE IP L + + L L N+L
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 475
Query: 120 SGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIP------ 173
+G IP+ + ++L+ ++ LS N+L G P G L+NL ++ +S N S +IP
Sbjct: 476 TGEIPSGLSNCTNLN-WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 174 NSLENLNLSFNHFEGEVPIKGVFNNSSAIS 203
SL L+L+ N F G +P +F S I+
Sbjct: 535 RSLIWLDLNTNLFNGTIP-AAMFKQSGKIA 563
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 97/210 (46%), Gaps = 11/210 (5%)
Query: 13 LKILSVENNQFFGNIP-SGXXXXXXXXXXXXXXXQFKGQIPGTIGDLLK--LQRLTLQGN 69
LK+L + N+F G +P S F G I + K LQ L LQ N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 70 KFLGEIPPSIGNXXXXXXXNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIR 129
F G+IPP++ N + N L +IPSSLG + L L N L G IP E++
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 130 LSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPN---SLEN---LNLSF 183
+ +L L L N L G PS NL I +S N+L+ +IP LEN L LS
Sbjct: 462 VKTLET-LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 520
Query: 184 NHFEGEVPIKGVFNNSSAISLDGNDNLCGG 213
N F G +P + + + S I LD N NL G
Sbjct: 521 NSFSGNIPAE-LGDCRSLIWLDLNTNLFNG 549
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 81/176 (46%), Gaps = 1/176 (0%)
Query: 1 MLPEAVGSLSTQLKILSVENNQFFGNIPSGXXXXXXXXXXXXXXXQFKGQIPGTIGDLLK 60
+LP + L+ L ++NN F G IP G IP ++G L K
Sbjct: 381 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 440
Query: 61 LQRLTLQGNKFLGEIPPSIGNXXXXXXXNFGENMLEESIPSSLGKCQNIALLDLSNNNLS 120
L+ L L N GEIP + N L IPS L C N+ + LSNN L+
Sbjct: 441 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 500
Query: 121 GTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNSL 176
G IP + RL +L+I L LS N +G P+ G ++L +D++ N + IP ++
Sbjct: 501 GEIPKWIGRLENLAI-LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 8 SLSTQLKILSVENNQFFGNIPSGXXXXXXXXXXXXXXXQFKGQIPGTI-GDLLKLQRLTL 66
S T+LK+L++ +NQF G IP +F G+IP + G L L L
Sbjct: 241 STCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 298
Query: 67 QGNKFLGEIPPSIGNXXXXXXXNFGENMLEESIP-SSLGKCQNIALLDLSNNNLSGTIPT 125
GN F G +PP G+ N +P +L K + + +LDLS N SG +P
Sbjct: 299 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 358
Query: 126 EVIRLSSLSIYLDLSQNQLNGPFPSNF--GVLKNLGVIDISENKLSDDIPNSLEN----- 178
+ LS+ + LDLS N +GP N L + + N + IP +L N
Sbjct: 359 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 418
Query: 179 -LNLSFNHFEGEVP 191
L+LSFN+ G +P
Sbjct: 419 SLHLSFNYLSGTIP 432
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 95/254 (37%), Gaps = 53/254 (20%)
Query: 11 TQLKILSVENNQFFGNIPSGXXXXXXXXXXXXXXXQFKGQIPGTIGDLLKLQRLTLQGNK 70
T L +S+ NN+ G IP F G IP +GD L L L N
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 71 FLGEIPPSIGNXXXXXXXNF--------------------GENMLE-ESIPS-------S 102
F G IP ++ NF N+LE + I S +
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 103 LGKCQ------------------NIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQL 144
C ++ LD+S N LSG IP E+ + L I L+L N +
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI-LNLGHNDI 665
Query: 145 NGPFPSNFGVLKNLGVIDISENKLSDDIPNSLENL------NLSFNHFEGEVPIKGVFNN 198
+G P G L+ L ++D+S NKL IP ++ L +LS N+ G +P G F
Sbjct: 666 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 725
Query: 199 SSAISLDGNDNLCG 212
N LCG
Sbjct: 726 FPPAKFLNNPGLCG 739
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 87/218 (39%), Gaps = 48/218 (22%)
Query: 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGXXXXXXXXXXXXXXXQFKGQIPGTI------ 55
+P+ +G L L IL + NN F GNIP+ F G IP +
Sbjct: 503 IPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 561
Query: 56 --------------------------GDLLKLQ--------RLT------LQGNKFLGEI 75
G+LL+ Q RL+ + + G
Sbjct: 562 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 621
Query: 76 PPSIGNXXXXXXXNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSI 135
P+ N + NML IP +G + +L+L +N++SG+IP EV L L+I
Sbjct: 622 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 681
Query: 136 YLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIP 173
LDLS N+L+G P L L ID+S N LS IP
Sbjct: 682 -LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Query: 103 LGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVID 162
+ +C N+ LD+S+NN S IP + S +LD+S N+L+G F L +++
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 250
Query: 163 ISENKLSDDIP----NSLENLNLSFNHFEGEVP--IKGVFNNSSAISLDGN 207
IS N+ IP SL+ L+L+ N F GE+P + G + + + L GN
Sbjct: 251 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 301
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 10/166 (6%)
Query: 47 FKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNXXXXXXXNFGENMLEESIPSSLGKC 106
F IP +GD LQ L + GNK G+ +I N N IP
Sbjct: 209 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PL 265
Query: 107 QNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISEN 166
+++ L L+ N +G IP + LDLS N G P FG L + +S N
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 167 KLSDDIP-------NSLENLNLSFNHFEGEVPIKGVFNNSSAISLD 205
S ++P L+ L+LSFN F GE+P ++S ++LD
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 371
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 22/155 (14%)
Query: 101 SSLGKCQNIALLDLSNNNLSGTIPTEV---IRLSSLSIYLDLSQNQLNGP------FPSN 151
+SLG C + L++S+N L P +V ++L+SL + LDLS N ++G
Sbjct: 117 TSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEV-LDLSANSISGANVVGWVLSDG 173
Query: 152 FGVLKNLGVIDISENKLSDDIPNS----LENLNLSFNHFEGEVPIKGVFNNSSAISLDGN 207
G LK+L IS NK+S D+ S LE L++S N+F +P G + + + GN
Sbjct: 174 CGELKHLA---ISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN 230
Query: 208 DNLCGGISELHLSTCS-IKESKQSRARSLKPIIPI 241
L G S +STC+ +K S + + PI P+
Sbjct: 231 -KLSGDFSR-AISTCTELKLLNISSNQFVGPIPPL 263
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 14/106 (13%)
Query: 105 KCQ-NIALLDLSNNNLSGTIPTEVIRLSSLS--IYLDLSQNQLNGPFPSNFGV-LKNLGV 160
KC ++ LDLS N+LSG + T + L S S +L++S N L+ P + G+ L +L V
Sbjct: 94 KCSASLTSLDLSRNSLSGPV-TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 152
Query: 161 IDISENKLS---------DDIPNSLENLNLSFNHFEGEVPIKGVFN 197
+D+S N +S D L++L +S N G+V + N
Sbjct: 153 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 198
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 99/210 (47%), Gaps = 10/210 (4%)
Query: 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGXXXXXXXXXXXXXXXQ--FKGQIPGTIGDLL 59
LPE++ +LS L L + +N F G I F G+IP T+ +
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418
Query: 60 KLQRLTLQGNKFLGEIPPSIGNXXXXXXXNFGENMLEESIPSSLGKCQNIALLDLSNNNL 119
+L L L N G IP S+G+ NMLE IP L + + L L N+L
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478
Query: 120 SGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIP------ 173
+G IP+ + ++L+ ++ LS N+L G P G L+NL ++ +S N S +IP
Sbjct: 479 TGEIPSGLSNCTNLN-WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 174 NSLENLNLSFNHFEGEVPIKGVFNNSSAIS 203
SL L+L+ N F G +P +F S I+
Sbjct: 538 RSLIWLDLNTNLFNGTIP-AAMFKQSGKIA 566
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 97/210 (46%), Gaps = 11/210 (5%)
Query: 13 LKILSVENNQFFGNIP-SGXXXXXXXXXXXXXXXQFKGQIPGTIGDLLK--LQRLTLQGN 69
LK+L + N+F G +P S F G I + K LQ L LQ N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 70 KFLGEIPPSIGNXXXXXXXNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIR 129
F G+IPP++ N + N L +IPSSLG + L L N L G IP E++
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 130 LSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPN---SLEN---LNLSF 183
+ +L L L N L G PS NL I +S N+L+ +IP LEN L LS
Sbjct: 465 VKTLET-LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 184 NHFEGEVPIKGVFNNSSAISLDGNDNLCGG 213
N F G +P + + + S I LD N NL G
Sbjct: 524 NSFSGNIPAE-LGDCRSLIWLDLNTNLFNG 552
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 81/176 (46%), Gaps = 1/176 (0%)
Query: 1 MLPEAVGSLSTQLKILSVENNQFFGNIPSGXXXXXXXXXXXXXXXQFKGQIPGTIGDLLK 60
+LP + L+ L ++NN F G IP G IP ++G L K
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443
Query: 61 LQRLTLQGNKFLGEIPPSIGNXXXXXXXNFGENMLEESIPSSLGKCQNIALLDLSNNNLS 120
L+ L L N GEIP + N L IPS L C N+ + LSNN L+
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Query: 121 GTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNSL 176
G IP + RL +L+I L LS N +G P+ G ++L +D++ N + IP ++
Sbjct: 504 GEIPKWIGRLENLAI-LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 8 SLSTQLKILSVENNQFFGNIPSGXXXXXXXXXXXXXXXQFKGQIPGTI-GDLLKLQRLTL 66
S T+LK+L++ +NQF G IP +F G+IP + G L L L
Sbjct: 244 STCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301
Query: 67 QGNKFLGEIPPSIGNXXXXXXXNFGENMLEESIP-SSLGKCQNIALLDLSNNNLSGTIPT 125
GN F G +PP G+ N +P +L K + + +LDLS N SG +P
Sbjct: 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361
Query: 126 EVIRLSSLSIYLDLSQNQLNGPFPSNF--GVLKNLGVIDISENKLSDDIPNSLEN----- 178
+ LS+ + LDLS N +GP N L + + N + IP +L N
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421
Query: 179 -LNLSFNHFEGEVP 191
L+LSFN+ G +P
Sbjct: 422 SLHLSFNYLSGTIP 435
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 95/254 (37%), Gaps = 53/254 (20%)
Query: 11 TQLKILSVENNQFFGNIPSGXXXXXXXXXXXXXXXQFKGQIPGTIGDLLKLQRLTLQGNK 70
T L +S+ NN+ G IP F G IP +GD L L L N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 71 FLGEIPPSIGNXXXXXXXNF--------------------GENMLE-ESIPS-------S 102
F G IP ++ NF N+LE + I S +
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 103 LGKCQ------------------NIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQL 144
C ++ LD+S N LSG IP E+ + L I L+L N +
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI-LNLGHNDI 668
Query: 145 NGPFPSNFGVLKNLGVIDISENKLSDDIPNSLENL------NLSFNHFEGEVPIKGVFNN 198
+G P G L+ L ++D+S NKL IP ++ L +LS N+ G +P G F
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 728
Query: 199 SSAISLDGNDNLCG 212
N LCG
Sbjct: 729 FPPAKFLNNPGLCG 742
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 87/218 (39%), Gaps = 48/218 (22%)
Query: 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGXXXXXXXXXXXXXXXQFKGQIPGTI------ 55
+P+ +G L L IL + NN F GNIP+ F G IP +
Sbjct: 506 IPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564
Query: 56 --------------------------GDLLKLQ--------RLT------LQGNKFLGEI 75
G+LL+ Q RL+ + + G
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624
Query: 76 PPSIGNXXXXXXXNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSI 135
P+ N + NML IP +G + +L+L +N++SG+IP EV L L+I
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684
Query: 136 YLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIP 173
LDLS N+L+G P L L ID+S N LS IP
Sbjct: 685 -LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Query: 103 LGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVID 162
+ +C N+ LD+S+NN S IP + S +LD+S N+L+G F L +++
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253
Query: 163 ISENKLSDDIP----NSLENLNLSFNHFEGEVP--IKGVFNNSSAISLDGN 207
IS N+ IP SL+ L+L+ N F GE+P + G + + + L GN
Sbjct: 254 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 10/166 (6%)
Query: 47 FKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNXXXXXXXNFGENMLEESIPSSLGKC 106
F IP +GD LQ L + GNK G+ +I N N IP
Sbjct: 212 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PL 268
Query: 107 QNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISEN 166
+++ L L+ N +G IP + LDLS N G P FG L + +S N
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 167 KLSDDIP-------NSLENLNLSFNHFEGEVPIKGVFNNSSAISLD 205
S ++P L+ L+LSFN F GE+P ++S ++LD
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 22/155 (14%)
Query: 101 SSLGKCQNIALLDLSNNNLSGTIPTEV---IRLSSLSIYLDLSQNQLNGP------FPSN 151
+SLG C + L++S+N L P +V ++L+SL + LDLS N ++G
Sbjct: 120 TSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEV-LDLSANSISGANVVGWVLSDG 176
Query: 152 FGVLKNLGVIDISENKLSDDIPNS----LENLNLSFNHFEGEVPIKGVFNNSSAISLDGN 207
G LK+L IS NK+S D+ S LE L++S N+F +P G + + + GN
Sbjct: 177 CGELKHLA---ISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN 233
Query: 208 DNLCGGISELHLSTCS-IKESKQSRARSLKPIIPI 241
L G S +STC+ +K S + + PI P+
Sbjct: 234 -KLSGDFSR-AISTCTELKLLNISSNQFVGPIPPL 266
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 14/106 (13%)
Query: 105 KCQ-NIALLDLSNNNLSGTIPTEVIRLSSLS--IYLDLSQNQLNGPFPSNFGV-LKNLGV 160
KC ++ LDLS N+LSG + T + L S S +L++S N L+ P + G+ L +L V
Sbjct: 97 KCSASLTSLDLSRNSLSGPV-TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155
Query: 161 IDISENKLS---------DDIPNSLENLNLSFNHFEGEVPIKGVFN 197
+D+S N +S D L++L +S N G+V + N
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 201
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 89/226 (39%), Gaps = 27/226 (11%)
Query: 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGXXXXXXXXXXXXXXXQFKGQIPGTIGDLLKL 61
+P A+ L TQL L + + G IP G +P +I L L
Sbjct: 93 IPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151
Query: 62 QRLTLQGNKFLGEIPPSIGNXXXX-XXXNFGENMLEESIPSSLGKCQNIALLDLSNNNLS 120
+T GN+ G IP S G+ N L IP + N+A +DLS N L
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLE 210
Query: 121 GTIP--------TEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDI 172
G T+ I L+ S+ DL + G+ KNL +D+ N++ +
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK----------VGLSKNLNGLDLRNNRIYGTL 260
Query: 173 PNSL------ENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDNLCG 212
P L +LN+SFN+ GE+P G + N LCG
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 51 IPGTIGDLLKLQRLTLQG-NKFLGEIPPSIGNXXXXXXXNFGENMLEESIPSSLGKCQNI 109
IP ++ +L L L + G N +G IPP+I + +IP L + + +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 110 ALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGV-IDISENKL 168
LD S N LSGT+P + L +L + + N+++G P ++G L + IS N+L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNL-VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 169 SDDIPNSLENLNLSF-----NHFEGEVPIK-GVFNNSSAISLDGN 207
+ IP + NLNL+F N EG+ + G N+ I L N
Sbjct: 187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 1/123 (0%)
Query: 49 GQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNXXXXXXXNFGENMLEESIPSSLGKCQN 108
G IP I L +L L + G IP + +F N L ++P S+ N
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 109 IALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKL 168
+ + N +SG IP S L + +S+N+L G P F L NL +D+S N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209
Query: 169 SDD 171
D
Sbjct: 210 EGD 212
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 91 GENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNG--PF 148
G + E +P + +N+ LDLS L PT LSSL + L++S N F
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV-LNMSHNNFFSLDTF 512
Query: 149 PSNFGVLKNLGVIDISENKLS-------DDIPNSLENLNLSFNHF 186
P + L +L V+D S N + P+SL LNL+ N F
Sbjct: 513 P--YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 107 QNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPF-PSNFGVLKNLGVIDISE 165
+N+ LD+S+ + LSSL + L ++ N F P F L+NL +D+S+
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 166 NKLSDDIP------NSLENLNLSFNHF 186
+L P +SL+ LN+S N+F
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 91 GENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNG--PF 148
G + E +P + +N+ LDLS L PT LSSL + L++S N F
Sbjct: 478 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV-LNMSHNNFFSLDTF 536
Query: 149 PSNFGVLKNLGVIDISENKLS-------DDIPNSLENLNLSFNHF 186
P + L +L V+D S N + P+SL LNL+ N F
Sbjct: 537 P--YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 107 QNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPF-PSNFGVLKNLGVIDISE 165
+N+ LD+S+ + LSSL + L ++ N F P F L+NL +D+S+
Sbjct: 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 166 NKLSDDIP------NSLENLNLSFNHF 186
+L P +SL+ LN+S N+F
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 91 GENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNG--PF 148
G + E +P + +N+ LDLS L PT LSSL + L++S N F
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV-LNMSHNNFFSLDTF 217
Query: 149 PSNFGVLKNLGVIDISENKLS-------DDIPNSLENLNLSFNHF 186
P + L +L V+D S N + P+SL LNL+ N F
Sbjct: 218 P--YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 107 QNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPF-PSNFGVLKNLGVIDISE 165
+N+ LD+S+ + LSSL + L ++ N F P F L+NL +D+S+
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 166 NKLSDDIP------NSLENLNLSFNHF 186
+L P +SL+ LN+S N+F
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 97 ESIPSSLGKCQNIALLDLSNNNLSG----TIPTEVIRLSSLSIYLDLSQNQLNGPFPSNF 152
+S+PS ALLDLS+NNLS PT + L SL LS N LN F
Sbjct: 35 QSLPSY------TALLDLSHNNLSRLRAEWTPTRLTNLHSLL----LSHNHLNFISSEAF 84
Query: 153 GVLKNLGVIDISENKL 168
+ NL +D+S N L
Sbjct: 85 VPVPNLRYLDLSSNHL 100
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 97 ESIPSSL-GKCQNIALLDLSNNNLSGTIPTEVI-RLSSLSIYLDLSQNQLNGPFPSNFGV 154
+S+P+ + K N+ L L N L ++P V +L++L+ YL+L+ NQL F
Sbjct: 98 QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLT-YLNLAHNQLQSLPKGVFDK 155
Query: 155 LKNLGVIDISENKLSD------DIPNSLENLNLSFNHFEGEVPIKGVFNNSSA---ISLD 205
L NL +D+S N+L D L++L L N + VP GVF+ ++ I L
Sbjct: 156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VP-DGVFDRLTSLQYIWLH 213
Query: 206 GN--DNLCGGISEL 217
N D C GI L
Sbjct: 214 DNPWDCTCPGIRYL 227
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 91 GENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPS 150
G + E +P + +N+ LDLS L PT LSSL + L+++ NQL
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV-LNMASNQLKSVPDG 512
Query: 151 NFGVLKNLGVIDISENKLSDDIP 173
F L +L I + N P
Sbjct: 513 IFDRLTSLQKIWLHTNPWDCSCP 535
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 136 YLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSD------DIPNSLENLNLSFNHFEGE 189
+LDLSQ QL P+ F L +L V++++ N+L D SL+ + L N ++
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533
Query: 190 VP 191
P
Sbjct: 534 CP 535
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 27/180 (15%)
Query: 91 GENMLEESIPSSLGKCQNI-------ALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQ 143
GENML+ + + L C ++ +L L++N L+ P L++L L L+ N+
Sbjct: 459 GENMLQLAWETEL--CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG-LSLNSNR 515
Query: 144 LNGPFPSNFGVLKNLGVIDISENKL---SDDIPNSLENLNLSFNHFEGEVPIKGVFN--N 198
L S+ + NL ++DIS N+L + D+ SL L+++ N F E + N N
Sbjct: 516 LT--VLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLN 573
Query: 199 SSAISLDG--NDNLC------GGISELHLST--CSIKESKQSRARSLKPIIPIVAGILLV 248
+ +++ G D C G+S LST C +E +S SL + + + L+
Sbjct: 574 HTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLM 633
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 99 IPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNL 158
+P L +++ L+DLSNN +S T+ + + + L LS N+L P F LK+L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 159 GVIDISENKLS 169
++ + N +S
Sbjct: 105 RLLSLHGNDIS 115
>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVJ|B Chain B, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVK|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 2)
pdb|3LVL|B Chain B, Crystal Structure Of E.Coli Iscs-Iscu Complex
pdb|3LVM|A Chain A, Crystal Structure Of E.Coli Iscs
pdb|3LVM|B Chain B, Crystal Structure Of E.Coli Iscs
Length = 423
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 120 SGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNL--GVIDISENKLSDDIPNSLE 177
SGT+P V ++ + +++ ++ G+ L G+ DI E L+ D+ +
Sbjct: 260 SGTLP--VHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAP 317
Query: 178 N-LNLSFNHFEGE 189
N LN+SFN+ EGE
Sbjct: 318 NILNVSFNYVEGE 330
>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs
pdb|1P3W|A Chain A, X-Ray Crystal Structure Of E. Coli Iscs
Length = 404
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 120 SGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNL--GVIDISENKLSDDIPNSLE 177
SGT+P V ++ + +++ ++ G+ L G+ DI E L+ D+ +
Sbjct: 241 SGTLP--VHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAP 298
Query: 178 N-LNLSFNHFEGE 189
N LN+SFN+ EGE
Sbjct: 299 NILNVSFNYVEGE 311
>pdb|1Z8D|A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A
With Amp And Glucose
Length = 842
Score = 28.1 bits (61), Expect = 4.8, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 123 IPTEVIRLSSLSIYLDLS----QNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNSLEN 178
I +E+++ + + +L QN+ NG P + VL N G+ ++ ++ +D + L+
Sbjct: 459 IHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEVIAERIGEDFISDLDQ 518
Query: 179 LNLSFNHFEGEVPIKGV 195
L + + E I+ V
Sbjct: 519 LRKLLSFVDDEAFIRDV 535
>pdb|1A0T|P Chain P, Sucrose-Specific Porin, With Bound Sucrose Molecules
pdb|1A0T|Q Chain Q, Sucrose-Specific Porin, With Bound Sucrose Molecules
pdb|1A0T|R Chain R, Sucrose-Specific Porin, With Bound Sucrose Molecules
pdb|1A0S|P Chain P, Sucrose-Specific Porin
pdb|1A0S|Q Chain Q, Sucrose-Specific Porin
pdb|1A0S|R Chain R, Sucrose-Specific Porin
pdb|1OH2|P Chain P, Sucrose-Specific Porin, With Bound Sucrose Molecules
pdb|1OH2|R Chain R, Sucrose-Specific Porin, With Bound Sucrose Molecules
Length = 413
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 143 QLNGPFPSNFGVL-KNLGVIDISENKLSDDIPNSLENLNLSFNHFEG--EVPIKGVFNNS 199
+ N SNF + +N G ID D NS++N L+ NHF G ++ + G+
Sbjct: 146 KWNDGLRSNFSLYGRNFGDID--------DSSNSVQNYILTMNHFAGPLQMMVSGLRAKD 197
Query: 200 SAISLDGNDNLCGG 213
+ D N NL G
Sbjct: 198 NDERKDSNGNLAKG 211
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 19/79 (24%)
Query: 149 PSNFGVLKNLGVIDISENKLS---DDIPNSLENLN-LSFNHFEGEVPIKGVFNNSSAISL 204
PS F L+NL ++D+S N ++ +D+ LENL L F H NN + +
Sbjct: 473 PSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQH-----------NNLARLWK 521
Query: 205 DGND----NLCGGISELHL 219
N N G+S LH+
Sbjct: 522 RANPGGPVNFLKGLSHLHI 540
>pdb|1PYG|A Chain A, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|B Chain B, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|C Chain C, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|D Chain D, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|2AMV|A Chain A, The Structure Of Glycogen Phosphorylase B With An Alkyl-
Dihydropyridine-Dicarboxylic Acid
pdb|1E1Y|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1UZU|A Chain A, Glycogen Phosphorylase B In Complex With Indirubin-5'-
Sulphonate
pdb|1XC7|A Chain A, Binding Of Beta-D-Glucopyranosyl Bismethoxyphosphoramidate
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1XKX|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1XL0|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1XL1|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1Z62|A Chain A, Indirubin-3'-aminooxy-acetate Inhibits Glycogen
Phosphorylase By Binding At The Inhibitor And The
Allosteric Site. Broad Specificities Of The Two Sites
pdb|2F3P|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
N-(Beta-D- Glucopyranosyl)oxamic Acid Complex
pdb|2F3Q|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
METHYL-N-(Beta-D- Glucopyranosyl)oxamate Complex
pdb|2F3S|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
ETHYL-N- (Beta-D-Glucopyranosyl)oxamate Complex
pdb|2F3U|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
N-(Beta-D- Glucopyranosyl)-N'-Cyclopropyl Oxalamide
Complex
pdb|2FET|A Chain A, Synthesis Of C-D-Glycopyranosyl-Hydroquinones
And-Benzoquinones. Inhibition Of Ptp1b. Inhibition Of
And Binding To Glycogen Phosphorylase In The Crystal
pdb|2FF5|A Chain A, Synthesis Of C-D-Glycopyranosyl-Hydroquinones
And-Benzoquinones. Inhibition Of Ptp1b. Inhibition Of
And Binding To Glycogen Phosphorylase In The Crystal
pdb|1AXR|A Chain A, Cooperativity Between Hydrogen-Bonding And Charge-Dipole
Interactions In The Inhibition Of Beta-Glycosidases By
Azolopyridines: Evidence From A Study With Glycogen
Phosphorylase B
pdb|1GPY|A Chain A, Crystallographic Binding Studies On The Allosteric
Inhibitor Glucose- 6-Phosphate To T State Glycogen
Phosphorylase B
pdb|3BD7|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Thymine
pdb|3BD8|A Chain A, Glucogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Cytosine
pdb|3BDA|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Cyanuric Acid
Length = 842
Score = 27.7 bits (60), Expect = 6.4, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 123 IPTEVIRLSSLSIYLDLS----QNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNSLEN 178
I +E+++ + + +L QN+ NG P + VL N G+ +I ++ ++ + L+
Sbjct: 458 IHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQ 517
Query: 179 LNLSFNHFEGEVPIKGV 195
L ++ + E I+ V
Sbjct: 518 LRKLLSYVDDEAFIRDV 534
>pdb|7GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|B Chain B, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|C Chain C, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|D Chain D, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|9GPB|A Chain A, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|B Chain B, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|C Chain C, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|D Chain D, The Allosteric Transition Of Glycogen Phosphorylase
pdb|1B4D|A Chain A, Amidocarbamate Inhibitor Of Glycogen Phosphorylase
pdb|1BX3|A Chain A, Effects Of Commonly Used Cryoprotectants On Glycogen
Phosphorylase Activity And Structure
pdb|2PRI|A Chain A, Binding Of 2-Deoxy-Glucose-6-Phosphate To Glycogen
Phosphorylase B
pdb|2PRJ|A Chain A, Binding Of N-Acetyl-Beta-D-Glucopyranosylamine To Glycogen
Phosphorylase B
pdb|2SKC|A Chain A, Pyridoxal Phosphorylase B In Complex With Fluorophosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKD|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKE|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphite,
Glucose And Inosine-5'-monophosphate
pdb|1C8K|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1GFZ|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1GG8|A Chain A, Design Of Inhibitors Of Glycogen Phosphorylase: A Study Of
Alpha-And Beta-C-Glucosides And 1-Thio-Beta-D-Glucose
Compounds
pdb|1FS4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTQ|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTW|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTY|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU7|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU8|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1GGN|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1HLF|A Chain A, Binding Of Glucopyranosylidene-Spiro-Thiohydantoin To
Glycogen Phosphorylase B: Kinetic And Crystallographic
Stud
pdb|1H5U|A Chain A, The 1.76 A Resolution Crystal Structure Of Glycogen
Phosphorylase B Complexed With Glucose And Cp320626, A
Potential Antidiabetic Drug
pdb|1K06|A Chain A, Crystallographic Binding Study Of 100 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1K08|A Chain A, Crystallographic Binding Study Of 10 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1KTI|A Chain A, Binding Of 100 Mm N-Acetyl-N'-Beta-D-Glucopyranosyl Urea
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1P29|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Maltopentaose
pdb|1P2B|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Maltoheptaose
pdb|1P2D|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Beta Cyclodextrin
pdb|1P2G|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Gamma Cyclodextrin
pdb|1P4G|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Azido-Alpha-D-Glucopyranosyl)formamide
pdb|1P4H|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Acetamido-alpha-d-glucopyranosyl) Formamide
pdb|1P4J|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Hydroxy-Beta-D-Glucopyranosyl)formamide
pdb|1WUT|A Chain A, Acyl Ureas As Human Liver Glycogen Phosphorylase
Inhibitors For The Treatment Of Type 2 Diabetes
pdb|1WUY|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogen Phosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WV0|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogen Phosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WV1|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogenphosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WW2|A Chain A, Crystallographic Studies On Two Bioisosteric Analogues,
N-Acetyl-Beta- D-Glucopyranosylamine And
N-Trifluoroacetyl-Beta-D- Glucopyranosylamine, Potent
Inhibitors Of Muscle Glycogen Phosphorylase
pdb|1WW3|A Chain A, Crystallographic Studies On Two Bioisosteric Analogues,
N-Acetyl-Beta- D-Glucopyranosylamine And
N-Trifluoroacetyl-Beta-D- Glucopyranosylamine, Potent
Inhibitors Of Muscle Glycogen Phosphorylase
pdb|2IEG|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEG|B Chain B, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEI|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEI|B Chain B, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|1GPB|A Chain A, Glycogen Phosphorylase B: Description Of The Protein
Structure
pdb|2GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|3GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|4GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|5GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|6GPB|A Chain A, Refined Crystal Structure Of The Phosphorylase-Heptulose
2-Phosphate- Oligosaccharide-Amp Complex
pdb|8GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|2QN7|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-Hydroxybenzoyl-N'-4-Beta- D-Glucopyranosyl Urea
pdb|2QN8|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-nitrobenzoyl-n'-beta-d- Glucopyranosyl Urea
pdb|2QN9|A Chain A, Glycogen Phosphorylase In Complex With
N-4-Aminobenzoyl-N'-Beta-D- Glucopyranosyl Urea
Length = 842
Score = 27.7 bits (60), Expect = 6.4, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 123 IPTEVIRLSSLSIYLDLS----QNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNSLEN 178
I +E+++ + + +L QN+ NG P + VL N G+ +I ++ ++ + L+
Sbjct: 458 IHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQ 517
Query: 179 LNLSFNHFEGEVPIKGV 195
L ++ + E I+ V
Sbjct: 518 LRKLLSYVDDEAFIRDV 534
>pdb|1C50|A Chain A, Identification And Structural Characterization Of A Novel
Allosteric Binding Site Of Glycogen Phosphorylase B
Length = 830
Score = 27.7 bits (60), Expect = 6.4, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 123 IPTEVIRLSSLSIYLDLS----QNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNSLEN 178
I +E+++ + + +L QN+ NG P + VL N G+ +I ++ ++ + L+
Sbjct: 446 IHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQ 505
Query: 179 LNLSFNHFEGEVPIKGV 195
L ++ + E I+ V
Sbjct: 506 LRKLLSYVDDEAFIRDV 522
>pdb|1C8L|A Chain A, Synergistic Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug And Caffeine
pdb|1LWN|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|1LWO|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|3AMV|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
pdb|2GPA|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
Length = 842
Score = 27.7 bits (60), Expect = 6.4, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 123 IPTEVIRLSSLSIYLDLS----QNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNSLEN 178
I +E+++ + + +L QN+ NG P + VL N G+ +I ++ ++ + L+
Sbjct: 458 IHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQ 517
Query: 179 LNLSFNHFEGEVPIKGV 195
L ++ + E I+ V
Sbjct: 518 LRKLLSYVDDEAFIRDV 534
>pdb|1Z6P|A Chain A, Glycogen Phosphorylase Amp Site Inhibitor Complex
pdb|1Z6Q|A Chain A, Glycogen Phosphorylase With Inhibitor In The Amp Site
pdb|1A8I|A Chain A, Spirohydantoin Inhibitor Of Glycogen Phosphorylase
pdb|2GPN|A Chain A, 100 K Structure Of Glycogen Phosphorylase At 2.0 Angstroms
Resolution
pdb|3E3O|A Chain A, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|B Chain B, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|C Chain C, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|D Chain D, Glycogen Phosphorylase R State-Imp Complex
Length = 842
Score = 27.7 bits (60), Expect = 6.4, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 123 IPTEVIRLSSLSIYLDLS----QNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNSLEN 178
I +E+++ + + +L QN+ NG P + VL N G+ +I ++ ++ + L+
Sbjct: 458 IHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQ 517
Query: 179 LNLSFNHFEGEVPIKGV 195
L ++ + E I+ V
Sbjct: 518 LRKLLSYVDDEAFIRDV 534
>pdb|1NOI|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|B Chain B, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|C Chain C, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|D Chain D, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOJ|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
State
pdb|1NOK|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
State
Length = 842
Score = 27.7 bits (60), Expect = 6.4, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 123 IPTEVIRLSSLSIYLDLS----QNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNSLEN 178
I +E+++ + + +L QN+ NG P + VL N G+ +I ++ ++ + L+
Sbjct: 458 IHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQ 517
Query: 179 LNLSFNHFEGEVPIKGV 195
L ++ + E I+ V
Sbjct: 518 LRKLLSYVDDEAFIRDV 534
>pdb|4EJ2|A Chain A, Crystal Structure Of Gpb In Complex With Dk10
pdb|4EKE|A Chain A, Crystal Structure Of Gpb In Complex With Dk11
pdb|4EKY|A Chain A, Crystal Structure Of Gpb In Complex With Dk15
pdb|4EL0|A Chain A, Crystal Structure Of Gpb In Complex With Dk16
pdb|4EL5|A Chain A, Crystal Structure Of Gpb In Complex With Dk12
Length = 825
Score = 27.7 bits (60), Expect = 6.4, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 123 IPTEVIRLSSLSIYLDLS----QNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNSLEN 178
I +E+++ + + +L QN+ NG P + VL N G+ +I ++ ++ + L+
Sbjct: 447 IHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQ 506
Query: 179 LNLSFNHFEGEVPIKGV 195
L ++ + E I+ V
Sbjct: 507 LRKLLSYVDDEAFIRDV 523
>pdb|3NC4|A Chain A, The Binding Of Beta-D-Glucopyranosyl-Thiosemicarbazone
Derivatives To Glycogen Phosphorylase: A New Class Of
Inhibitors
Length = 841
Score = 27.7 bits (60), Expect = 6.4, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 123 IPTEVIRLSSLSIYLDLS----QNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNSLEN 178
I +E+++ + + +L QN+ NG P + VL N G+ +I ++ ++ + L+
Sbjct: 457 IHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQ 516
Query: 179 LNLSFNHFEGEVPIKGV 195
L ++ + E I+ V
Sbjct: 517 LRKLLSYVDDEAFIRDV 533
>pdb|1GPA|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|B Chain B, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|C Chain C, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|D Chain D, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
Length = 842
Score = 27.7 bits (60), Expect = 6.4, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 123 IPTEVIRLSSLSIYLDLS----QNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNSLEN 178
I +E+++ + + +L QN+ NG P + VL N G+ +I ++ ++ + L+
Sbjct: 458 IHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQ 517
Query: 179 LNLSFNHFEGEVPIKGV 195
L ++ + E I+ V
Sbjct: 518 LRKLLSYVDDEAFIRDV 534
>pdb|2PYD|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With Glucose At 100 K
pdb|2PYI|A Chain A, Crystal Structure Of Glycogen Phosphorylase In Complex
With Glucosyl Triazoleacetamide
pdb|3L79|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk1 Complex
pdb|3L7A|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk2 Complex
pdb|3L7B|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk3 Complex
pdb|3L7C|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk4 Complex
pdb|3L7D|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk5 Complex
Length = 843
Score = 27.7 bits (60), Expect = 6.4, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 123 IPTEVIRLSSLSIYLDLS----QNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNSLEN 178
I +E+++ + + +L QN+ NG P + VL N G+ +I ++ ++ + L+
Sbjct: 459 IHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQ 518
Query: 179 LNLSFNHFEGEVPIKGV 195
L ++ + E I+ V
Sbjct: 519 LRKLLSYVDDEAFIRDV 535
>pdb|2GM9|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In
Complex With Thienopyrrole
Length = 825
Score = 27.7 bits (60), Expect = 6.4, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 123 IPTEVIRLSSLSIYLDLS----QNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNSLEN 178
I +E+++ + + +L QN+ NG P + VL N G+ +I ++ ++ + L+
Sbjct: 447 IHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQ 506
Query: 179 LNLSFNHFEGEVPIKGV 195
L ++ + E I+ V
Sbjct: 507 LRKLLSYVDDEAFIRDV 523
>pdb|2GJ4|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In
Complex With Ligand
Length = 824
Score = 27.7 bits (60), Expect = 6.4, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 123 IPTEVIRLSSLSIYLDLS----QNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNSLEN 178
I +E+++ + + +L QN+ NG P + VL N G+ +I ++ ++ + L+
Sbjct: 447 IHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQ 506
Query: 179 LNLSFNHFEGEVPIKGV 195
L ++ + E I+ V
Sbjct: 507 LRKLLSYVDDEAFIRDV 523
>pdb|2G9Q|A Chain A, The Crystal Structure Of The Glycogen Phosphorylase B- 1ab
Complex
pdb|2G9R|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With (3r,
4r,5r)-5-Hydroxymethyl-1-(3-Phenylpropyl)-Piperidine-3,
4-Diol
pdb|2G9U|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With (3r,
4r,5r)-5-Hydroxymethyl-1-(3-Phenylpropyl)-Piperidine-3,
4-Diol And Phosphate
pdb|2G9V|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With (3r, 4r,5r)-5-Hydroxymethylpiperidine-3,4-Diol And
Phosphate
pdb|2OFF|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With A Potent Allosteric Inhibitor
pdb|2QN1|A Chain A, Glycogen Phosphorylase B In Complex With Asiatic Acid
pdb|2QN2|A Chain A, Glycogen Phosphorylase B In Complex With Maslinic Acid
pdb|2QLM|A Chain A, Glycogen Phosphorylase In Complex With Fn67
pdb|2QLN|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-Phenylbenzoyl- N'-Beta-D-Glucopyranosyl Urea
pdb|2QN3|A Chain A, Glycogen Phosphorylase In Complex With
N-4-Chlorobenzoyl-N- Beta-D-Glucopyranosyl Urea
pdb|2QNB|A Chain A, Glycogen Phosphorylase B In Complex With
N-Benzoyl-N'-Beta- D-Glucopyranosyl Urea
pdb|2QRM|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Nitrophenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,
5'-Isoxazoline]
pdb|2QRP|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(2-
Naphthyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-Isoxazoline]
pdb|2QRQ|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Methylphenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-
Isoxazoline]
pdb|2QRG|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Methoxyphenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-
Isoxazoline]
pdb|2QRH|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-
Phenylspiro[1,5-Anhydro-D-Glucitol-1,5'-Isoxazoline]
pdb|3BCR|A Chain A, Glycogen Phosphorylase B In Complex With Azt
pdb|3BCS|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Uracil
pdb|3BCU|A Chain A, Glucogen Phosphorylase Complex With Thymidine
pdb|3BD6|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Ribofuranosyl)
Cyanuric Acid
pdb|3E3L|A Chain A, The R-state Glycogen Phosphorylase
pdb|3E3L|B Chain B, The R-state Glycogen Phosphorylase
pdb|3E3L|C Chain C, The R-state Glycogen Phosphorylase
pdb|3E3L|D Chain D, The R-state Glycogen Phosphorylase
pdb|3CUT|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamide
pdb|3CUU|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamides
pdb|3CUV|A Chain A, Tracking Structure Activity Relationships Of Glycogen
Phosphorylase Inhibitors: Synthesis, Kinetic And
Crystallographic Evaluation Of Analogues Of N-(-D-
Glucopyranosyl)-N'-Oxamides
pdb|3CUW|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamides
pdb|3E3N|A Chain A, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|B Chain B, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|C Chain C, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|D Chain D, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|E Chain E, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|F Chain F, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|G Chain G, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|H Chain H, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3EBO|A Chain A, Glycogen Phosphorylase B/chrysin Complex
pdb|3EBP|A Chain A, Glycogen Phosphorylase B/flavopiridol Complex
pdb|3G2H|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2I|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazole
pdb|3G2J|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2K|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazole
pdb|3G2L|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2N|A Chain A, Crystal Structure Of N-Acylglucosylamine With Glycogen
Phosphorylase
pdb|3MQF|A Chain A, Glycogen Phosphorylase Complexed With
4-Fluorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MRT|A Chain A, Glycogen Phosphorylase Complexed With
4-Pyridinecarboxaldehyde-4- (Beta-D-Glucopyranosyl)
Thiosemicarbazone
pdb|3MRV|A Chain A, Glycogen Phosphorylase Complexed With
3-Hydroxybenzaldehyde-4-(Beta-D- Glucopyranosyl)
Thiosemicarbazone
pdb|3MRX|A Chain A, Glycogen Phosphorylase Complexed With
4-Methoxybenzaldehyde-4-(2,3,4,
6-Tetra-O-Acetyl-Beta-D-Glucopyranosyl)-
Thiosemicarbazone
pdb|3MS2|A Chain A, Glycogen Phosphorylase Complexed With
4-Methylbenzaldehyde-4-(Beta-D- Glucopyranosyl)
Thiosemicarbazone
pdb|3MS4|A Chain A, Glycogen Phosphorylase Complexed With
4-Trifluoromethylbenzaldehyde-4-
(Beta-D-Glucopyranosyl)-Thiosemicarbazone
pdb|3MS7|A Chain A, Glycogen Phosphorylase Complexed With
2-Chlorobenzaldehyde-4-(2,3,4,6-
Tetra-O-Acetyl-Beta-D-Glucopyranosyl) Thiosemicarbazone
pdb|3MT7|A Chain A, Glycogen Phosphorylase Complexed With
4-Bromobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MT8|A Chain A, Glycogen Phosphorylase Complexed With
4-Chlorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MT9|A Chain A, Glycogen Phosphorylase Complexed With
4-Nitrobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTA|A Chain A, Glycogen Phosphorylase Complexed With
3-Bromobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTB|A Chain A, Glycogen Phosphorylase Complexed With
3-Chlorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTD|A Chain A, Glycogen Phosphorylase Complexed With
4-Hydroxybenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MSC|A Chain A, Glycogen Phosphorylase Complexed With
2-Nitrobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3NP7|A Chain A, Glycogen Phosphorylase Complexed With
2,5-Dihydroxy-3-(Beta-D- Glucopyranosyl)-Chlorobenzene
And 2,5-Dihydroxy-4-(Beta-D-
Glucopyranosyl)-Chlorobenzene
pdb|3NP9|A Chain A, Glycogen Phosphorylase Complexed With
3-(Beta-D-Glucopyranosyl)-2-
Hydroxy-5-Methoxy-Chlorobenzene
pdb|3NPA|A Chain A, Glycogen Phosphorylase Complexed With
2,5-Dihydroxy-4-(Beta-D- Glucopyranosyl)-Bromo-Benzene
pdb|3S0J|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With 2,5-
Dihydroxy-4-(Beta-D-Glucopyranosyl)-Chlorobenzene
pdb|3SYM|A Chain A, Glycogen Phosphorylase B In Complex With 3
-C-(Hydroxymethyl)-Beta-D- Glucopyranonucleoside Of
5-Fluorouracil
pdb|3SYR|A Chain A, Glycogen Phosphorylase B In Complex With
Beta-D-Glucopyranonucleoside 5-Fluorouracil
pdb|3T3D|A Chain A, Glycogen Phosphorylase B In Complex With Glcu
pdb|3T3E|A Chain A, Glycogen Phosphorylase B In Complex With Glcclu
pdb|3T3G|A Chain A, Glycogen Phosphorylase B In Complex With Glcbru
pdb|3T3H|A Chain A, Glycogen Phosphorylase B In Complex With Glciu
pdb|3T3I|A Chain A, Glycogen Phosphorylase B In Complex With Glccf3u
Length = 842
Score = 27.7 bits (60), Expect = 6.4, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 123 IPTEVIRLSSLSIYLDLS----QNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNSLEN 178
I +E+++ + + +L QN+ NG P + VL N G+ +I ++ ++ + L+
Sbjct: 458 IHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQ 517
Query: 179 LNLSFNHFEGEVPIKGV 195
L ++ + E I+ V
Sbjct: 518 LRKLLSYVDDEAFIRDV 534
>pdb|2FFR|A Chain A, Crystallographic Studies On
N-Azido-Beta-D-Glucopyranosylamine, An Inhibitor Of
Glycogen Phosphorylase: Comparison With N-Acetyl-Beta-D-
Glucopyranosylamine
Length = 825
Score = 27.7 bits (60), Expect = 6.4, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 123 IPTEVIRLSSLSIYLDLS----QNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNSLEN 178
I +E+++ + + +L QN+ NG P + VL N G+ +I ++ ++ + L+
Sbjct: 447 IHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQ 506
Query: 179 LNLSFNHFEGEVPIKGV 195
L ++ + E I+ V
Sbjct: 507 LRKLLSYVDDEAFIRDV 523
>pdb|1ABB|A Chain A, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|B Chain B, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|C Chain C, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|D Chain D, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
Length = 828
Score = 27.7 bits (60), Expect = 6.4, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 123 IPTEVIRLSSLSIYLDLS----QNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNSLEN 178
I +E+++ + + +L QN+ NG P + VL N G+ +I ++ ++ + L+
Sbjct: 449 IHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQ 508
Query: 179 LNLSFNHFEGEVPIKGV 195
L ++ + E I+ V
Sbjct: 509 LRKLLSYVDDEAFIRDV 525
>pdb|1OH2|Q Chain Q, Sucrose-Specific Porin, With Bound Sucrose Molecules
Length = 413
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 143 QLNGPFPSNFGVL-KNLGVIDISENKLSDDIPNSLENLNLSFNHFEG--EVPIKGVFNNS 199
+ N SNF + +N G ID D NS++N L+ NHF G ++ + G+
Sbjct: 146 KWNDGLRSNFSLYGRNFGDID--------DSSNSVQNYILTMNHFAGPLQMMVSGLRAKD 197
Query: 200 SAISLDGNDNLCGG 213
+ D N NL G
Sbjct: 198 NDERKDSNGNLAKG 211
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 98 SIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKN 157
+IPS++ + LDL +N LS RL+ L + L L+ N+L F LKN
Sbjct: 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRL-LYLNDNKLQTLPAGIFKELKN 86
Query: 158 LGVIDISENKL 168
L + +++NKL
Sbjct: 87 LETLWVTDNKL 97
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 160 VIDISENKLSDDIPNSLENLNLSFN 184
+D +K+ DDIP+S +N++LSFN
Sbjct: 18 CMDQKLSKVPDDIPSSTKNIDLSFN 42
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 160 VIDISENKLSDDIPNSLENLNLSFN 184
+D +K+ DDIP+S +N++LSFN
Sbjct: 13 CMDQKLSKVPDDIPSSTKNIDLSFN 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.136 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,531,451
Number of Sequences: 62578
Number of extensions: 242855
Number of successful extensions: 650
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 148
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)