Query 039116
Match_columns 248
No_of_seqs 175 out of 2273
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:27:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 4.5E-25 9.8E-30 207.0 14.5 217 4-223 398-620 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.3E-24 2.7E-29 204.0 15.4 204 2-207 156-366 (968)
3 KOG4194 Membrane glycoprotein 99.9 1.3E-23 2.7E-28 177.1 2.4 159 12-171 174-332 (873)
4 KOG4194 Membrane glycoprotein 99.8 2.7E-22 5.9E-27 169.1 0.7 157 12-169 198-354 (873)
5 KOG0444 Cytoskeletal regulator 99.8 7.8E-21 1.7E-25 161.9 1.0 205 2-212 95-377 (1255)
6 KOG0617 Ras suppressor protein 99.8 2.3E-21 5E-26 140.6 -5.8 172 34-211 32-213 (264)
7 KOG4237 Extracellular matrix p 99.7 1.2E-19 2.6E-24 146.7 -0.6 204 8-212 64-361 (498)
8 KOG0617 Ras suppressor protein 99.7 5.4E-20 1.2E-24 133.5 -3.4 172 6-185 29-201 (264)
9 KOG0472 Leucine-rich repeat pr 99.7 1.9E-20 4.2E-25 151.8 -7.1 198 2-210 106-310 (565)
10 KOG0472 Leucine-rich repeat pr 99.7 9.4E-19 2E-23 142.1 0.0 81 126-209 430-540 (565)
11 PLN03210 Resistant to P. syrin 99.7 9.9E-16 2.2E-20 145.6 16.1 115 109-225 780-906 (1153)
12 KOG0444 Cytoskeletal regulator 99.7 3.8E-18 8.2E-23 145.7 -0.8 160 2-168 24-185 (1255)
13 PLN03210 Resistant to P. syrin 99.6 2.9E-15 6.3E-20 142.5 15.1 111 3-117 581-691 (1153)
14 PRK15370 E3 ubiquitin-protein 99.6 9.2E-16 2E-20 138.3 10.5 195 11-227 199-403 (754)
15 cd00116 LRR_RI Leucine-rich re 99.6 3E-16 6.5E-21 129.8 3.4 109 12-120 24-150 (319)
16 cd00116 LRR_RI Leucine-rich re 99.6 2.8E-16 6.1E-21 130.0 1.9 204 3-208 44-289 (319)
17 KOG4237 Extracellular matrix p 99.6 3.4E-17 7.4E-22 132.7 -4.0 206 1-208 81-380 (498)
18 KOG0618 Serine/threonine phosp 99.6 3.1E-17 6.7E-22 145.0 -4.8 202 2-211 256-490 (1081)
19 PRK15370 E3 ubiquitin-protein 99.6 4.5E-15 9.9E-20 133.8 8.3 186 12-215 221-433 (754)
20 PRK15387 E3 ubiquitin-protein 99.6 3.8E-14 8.1E-19 127.6 13.0 170 12-207 223-412 (788)
21 PRK15387 E3 ubiquitin-protein 99.5 8.8E-14 1.9E-18 125.2 10.7 183 10-213 241-460 (788)
22 KOG0618 Serine/threonine phosp 99.5 2.7E-15 5.9E-20 132.9 -1.1 199 2-207 279-510 (1081)
23 KOG0532 Leucine-rich repeat (L 99.4 2.5E-14 5.4E-19 121.1 -2.2 174 1-185 89-271 (722)
24 PLN03150 hypothetical protein; 99.3 1.2E-11 2.7E-16 110.7 8.1 111 109-223 420-538 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 3.9E-13 8.4E-18 114.0 -5.1 169 13-191 77-251 (722)
26 COG4886 Leucine-rich repeat (L 99.2 3.4E-11 7.4E-16 102.7 6.6 185 16-208 98-288 (394)
27 COG4886 Leucine-rich repeat (L 99.2 2.3E-11 5E-16 103.7 5.3 178 6-191 112-294 (394)
28 PLN03150 hypothetical protein; 99.2 1.4E-10 2.9E-15 104.1 8.9 108 36-144 419-527 (623)
29 KOG3207 Beta-tubulin folding c 99.1 1.6E-11 3.4E-16 101.4 -0.0 198 7-208 118-337 (505)
30 KOG1259 Nischarin, modulator o 99.1 2.1E-11 4.6E-16 96.5 0.6 122 82-209 283-411 (490)
31 PF14580 LRR_9: Leucine-rich r 99.1 4.8E-11 1.1E-15 89.3 2.4 16 57-72 62-77 (175)
32 PF14580 LRR_9: Leucine-rich r 99.1 1.8E-10 3.9E-15 86.2 4.6 127 31-164 15-148 (175)
33 PF13855 LRR_8: Leucine rich r 99.0 3.3E-10 7.2E-15 70.1 3.5 59 12-70 2-60 (61)
34 PF13855 LRR_8: Leucine rich r 99.0 8.1E-10 1.8E-14 68.3 4.1 61 35-95 1-61 (61)
35 KOG3207 Beta-tubulin folding c 98.9 1.6E-10 3.4E-15 95.5 0.5 181 6-189 142-341 (505)
36 KOG1259 Nischarin, modulator o 98.9 1.3E-10 2.8E-15 92.1 -0.1 126 37-169 286-412 (490)
37 KOG1909 Ran GTPase-activating 98.9 2.3E-10 5E-15 92.0 0.8 176 32-208 89-309 (382)
38 KOG1909 Ran GTPase-activating 98.8 3.6E-10 7.9E-15 90.9 -0.6 179 6-186 88-310 (382)
39 KOG0531 Protein phosphatase 1, 98.8 9.1E-10 2E-14 94.5 -1.3 166 12-188 96-269 (414)
40 KOG4658 Apoptotic ATPase [Sign 98.7 1.2E-08 2.7E-13 94.1 5.0 164 3-170 563-731 (889)
41 KOG0531 Protein phosphatase 1, 98.7 2.2E-09 4.8E-14 92.1 -0.4 186 12-207 73-265 (414)
42 KOG1859 Leucine-rich repeat pr 98.4 2.2E-09 4.7E-14 94.1 -7.3 123 85-212 166-294 (1096)
43 KOG2982 Uncharacterized conser 98.2 7.3E-07 1.6E-11 71.0 3.1 33 176-208 226-260 (418)
44 KOG4658 Apoptotic ATPase [Sign 98.2 9.9E-07 2.2E-11 81.8 4.2 62 55-117 567-628 (889)
45 KOG1859 Leucine-rich repeat pr 98.2 4.5E-08 9.8E-13 86.1 -4.7 126 12-145 165-292 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.2 3.8E-08 8.2E-13 78.2 -5.0 155 12-167 186-349 (419)
47 KOG4579 Leucine-rich repeat (L 98.2 8.3E-08 1.8E-12 67.8 -3.1 103 13-119 29-135 (177)
48 KOG1644 U2-associated snRNP A' 98.1 5.3E-06 1.1E-10 62.6 5.3 103 12-116 43-149 (233)
49 KOG4579 Leucine-rich repeat (L 98.1 2E-07 4.3E-12 65.9 -2.2 139 36-179 28-169 (177)
50 PF12799 LRR_4: Leucine Rich r 98.1 3.9E-06 8.4E-11 47.8 3.4 36 12-48 2-37 (44)
51 KOG2982 Uncharacterized conser 98.1 6.2E-07 1.3E-11 71.4 -0.3 183 6-189 66-264 (418)
52 COG5238 RNA1 Ran GTPase-activa 98.0 1.6E-06 3.5E-11 68.3 1.2 199 6-207 54-313 (388)
53 KOG1644 U2-associated snRNP A' 98.0 1.5E-05 3.3E-10 60.2 5.1 105 59-167 42-151 (233)
54 COG5238 RNA1 Ran GTPase-activa 97.9 5.5E-06 1.2E-10 65.3 2.7 198 9-209 29-284 (388)
55 PRK15386 type III secretion pr 97.9 0.00014 2.9E-09 61.6 10.3 54 33-93 50-104 (426)
56 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.8E-10 45.6 3.1 36 36-72 2-37 (44)
57 PRK15386 type III secretion pr 97.9 0.00024 5.1E-09 60.2 11.3 146 12-184 53-210 (426)
58 KOG3665 ZYG-1-like serine/thre 97.7 2.6E-05 5.5E-10 70.8 2.5 110 58-170 147-264 (699)
59 KOG3665 ZYG-1-like serine/thre 97.6 4.7E-05 1E-09 69.1 3.4 127 59-188 122-264 (699)
60 PF13306 LRR_5: Leucine rich r 97.6 0.0003 6.6E-09 49.9 6.7 54 12-67 13-66 (129)
61 PF13306 LRR_5: Leucine rich r 97.6 0.00032 7E-09 49.8 6.6 123 29-159 6-129 (129)
62 KOG2120 SCF ubiquitin ligase, 97.5 1E-05 2.2E-10 64.7 -2.0 156 8-167 208-374 (419)
63 KOG2123 Uncharacterized conser 96.8 8.2E-05 1.8E-09 59.1 -3.4 99 9-113 18-123 (388)
64 KOG2739 Leucine-rich acidic nu 96.4 0.0015 3.3E-08 51.4 1.6 87 32-120 40-129 (260)
65 KOG2739 Leucine-rich acidic nu 96.2 0.005 1.1E-07 48.5 3.1 103 57-162 41-149 (260)
66 PF00560 LRR_1: Leucine Rich R 95.9 0.0041 8.8E-08 29.5 1.0 21 12-33 1-21 (22)
67 KOG2123 Uncharacterized conser 95.4 0.00086 1.9E-08 53.4 -3.8 72 135-208 22-99 (388)
68 PF13504 LRR_7: Leucine rich r 94.0 0.046 1E-06 24.0 1.6 13 157-169 2-14 (17)
69 KOG0473 Leucine-rich repeat pr 93.8 0.0025 5.4E-08 49.6 -4.5 82 12-96 43-124 (326)
70 KOG3864 Uncharacterized conser 92.2 0.019 4.2E-07 43.7 -1.7 81 36-116 102-185 (221)
71 KOG4308 LRR-containing protein 91.7 0.00065 1.4E-08 59.2 -11.6 176 13-188 89-304 (478)
72 smart00369 LRR_TYP Leucine-ric 89.8 0.34 7.4E-06 23.6 2.1 13 36-48 3-15 (26)
73 smart00370 LRR Leucine-rich re 89.8 0.34 7.4E-06 23.6 2.1 13 36-48 3-15 (26)
74 PF13516 LRR_6: Leucine Rich r 88.1 0.21 4.5E-06 23.9 0.5 20 12-31 3-22 (24)
75 KOG3864 Uncharacterized conser 86.6 0.056 1.2E-06 41.2 -3.0 81 60-141 102-185 (221)
76 KOG0473 Leucine-rich repeat pr 84.6 0.031 6.7E-07 43.7 -5.3 87 79-169 38-124 (326)
77 KOG4308 LRR-containing protein 83.5 0.0085 1.9E-07 52.4 -9.9 162 7-170 112-304 (478)
78 KOG1947 Leucine rich repeat pr 82.9 0.49 1.1E-05 41.3 0.7 107 12-118 189-306 (482)
79 TIGR00864 PCC polycystin catio 80.0 1 2.2E-05 47.0 1.8 33 180-212 1-34 (2740)
80 smart00364 LRR_BAC Leucine-ric 79.0 1.3 2.8E-05 21.8 1.1 13 175-187 3-15 (26)
81 KOG1947 Leucine rich repeat pr 74.9 1.5 3.2E-05 38.2 1.2 111 33-144 186-307 (482)
82 smart00365 LRR_SD22 Leucine-ri 74.5 2.9 6.2E-05 20.6 1.7 13 36-48 3-15 (26)
83 smart00368 LRR_RI Leucine rich 70.2 3.8 8.2E-05 20.4 1.6 14 156-169 2-15 (28)
84 KOG3763 mRNA export factor TAP 67.0 2.2 4.7E-05 37.8 0.4 73 129-202 216-306 (585)
85 KOG4341 F-box protein containi 59.0 6.5 0.00014 33.8 1.9 130 12-142 295-436 (483)
86 PF05725 FNIP: FNIP Repeat; I 54.7 22 0.00047 19.7 3.0 11 171-181 31-41 (44)
87 KOG4341 F-box protein containi 52.7 8.6 0.00019 33.1 1.6 129 82-211 293-440 (483)
88 smart00367 LRR_CC Leucine-rich 41.1 18 0.0004 17.3 1.1 12 156-167 2-13 (26)
89 KOG3763 mRNA export factor TAP 39.7 13 0.00029 33.1 0.8 12 82-93 243-254 (585)
90 TIGR00864 PCC polycystin catio 27.4 39 0.00084 36.4 1.9 31 113-145 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=4.5e-25 Score=207.00 Aligned_cols=217 Identities=35% Similarity=0.629 Sum_probs=128.6
Q ss_pred hhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCC
Q 039116 4 EAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLT 83 (248)
Q Consensus 4 ~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 83 (248)
..++.++ +|+.|++++|.+.+..|..|.+++.|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..|..+ ..+
T Consensus 398 ~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~ 475 (968)
T PLN00113 398 KSLGACR-SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSK 475 (968)
T ss_pred HHHhCCC-CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccc
Confidence 3334444 44444444444444444444444555555555555544444444445555555555555444444333 235
Q ss_pred CccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEe
Q 039116 84 LLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDI 163 (248)
Q Consensus 84 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 163 (248)
+|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..++++ ++|++++|.+++..|..+..+++|+.|++
T Consensus 476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 554 (968)
T PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL-VSLDLSHNQLSGQIPASFSEMPVLSQLDL 554 (968)
T ss_pred cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC-CEEECCCCcccccCChhHhCcccCCEEEC
Confidence 56666666666665566666666677777777777766666666666666 67777777777666766777777777777
Q ss_pred cCCcCCCccCC------CCceEEccCCcceeeccCCcccCCCceeeecCCccceeccCccccCCCC
Q 039116 164 SENKLSDDIPN------SLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDNLCGGISELHLSTCS 223 (248)
Q Consensus 164 ~~n~i~~~~p~------~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~l~~l~~~~c~ 223 (248)
++|++++.+|. .|+.+++++|++.+.+|....+.......+.+|+.+||..+......|.
T Consensus 555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~ 620 (968)
T PLN00113 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCK 620 (968)
T ss_pred CCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCc
Confidence 77777666653 3667777777777766655555555556667777777654443445564
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.3e-24 Score=204.03 Aligned_cols=204 Identities=42% Similarity=0.645 Sum_probs=134.8
Q ss_pred CchhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCC
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGN 81 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 81 (248)
+|..++.+. +|+.|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..++.
T Consensus 156 ~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 156 IPNDIGSFS-SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred CChHHhcCC-CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 466677776 7777777777777677777777777777777777777667777777777777777777777667777777
Q ss_pred CCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEE
Q 039116 82 LTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVI 161 (248)
Q Consensus 82 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L 161 (248)
+++|+.|++.+|.+.+..|..+..+++|+.|++.+|.+.+..|..+..++++ ++|++++|.+.+..|..+..+++|+.|
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-~~L~Ls~n~l~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL-ISLDLSDNSLSGEIPELVIQLQNLEIL 313 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCc-CEEECcCCeeccCCChhHcCCCCCcEE
Confidence 7777777777777766666667777777777777776665666666666666 666666666665556655666666666
Q ss_pred EecCCcCCCccCC------CCceEEccCCcceeecc-CCcccCCCceeeecCC
Q 039116 162 DISENKLSDDIPN------SLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGN 207 (248)
Q Consensus 162 ~l~~n~i~~~~p~------~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n 207 (248)
++++|.+++..|. .|+.|++++|.+++..| ....+++|+.+++++|
T Consensus 314 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred ECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 6666665544442 25555555555554433 2333444444555444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.3e-23 Score=177.10 Aligned_cols=159 Identities=21% Similarity=0.228 Sum_probs=126.3
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
++++|+|++|.|+..--..|..+.+|.+|.++.|+++...+..|.++++|+.|++..|++.-..-.+|+.+++|+.|.+.
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 78888888888887777788888888888888888886667788888888888888888875545677888888888888
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCc
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDD 171 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 171 (248)
+|.+.......|..+.++++|++..|+++..-...+.+++.| +.|+++.|.|+++.++.+...++|+.|+|++|+|+..
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L-~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSL-EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred hcCcccccCcceeeecccceeecccchhhhhhcccccccchh-hhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence 888877666677778888888888888874444456677777 7888888888877777778888888888888888743
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.7e-22 Score=169.12 Aligned_cols=157 Identities=25% Similarity=0.216 Sum_probs=79.2
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+|..|.|+.|.++...+..|.++++|+.|++..|+|.....-.|.++++|+.|.+..|.+...-.+.|-.+.++++|++.
T Consensus 198 sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~ 277 (873)
T KOG4194|consen 198 SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE 277 (873)
T ss_pred hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecc
Confidence 55555555555553334444555555555555555553334445555555555555555544444444455555555555
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCC
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLS 169 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 169 (248)
.|+++.....|+..+..|++|++++|.|....++.+...+.| +.|+++.|.+++..+..|..+..|+.|+|+.|+++
T Consensus 278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL-~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL-KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred cchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc-eeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence 555554444444455555555555555544444444444444 55555555555444444444444555555555443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=7.8e-21 Score=161.91 Aligned_cols=205 Identities=30% Similarity=0.440 Sum_probs=138.5
Q ss_pred CchhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCC
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGN 81 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 81 (248)
||+.++.+. .|+.|||++|+++ ..|..+.+-.++-.|.+++|+|..+...-|.++..|-+|++++|++. .+|..+..
T Consensus 95 iP~diF~l~-dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR 171 (1255)
T KOG0444|consen 95 IPTDIFRLK-DLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR 171 (1255)
T ss_pred CCchhcccc-cceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHH
Confidence 789999999 9999999999988 88888888888888888888888554455666777777777777766 44544444
Q ss_pred CCCccEEEccccccc-------------------------ccCCccccCCCCCcEEEcccCcCccccchhhhhccccccE
Q 039116 82 LTLLTTLNFGENMLE-------------------------ESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIY 136 (248)
Q Consensus 82 l~~L~~L~l~~n~~~-------------------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~ 136 (248)
+..|++|++++|.+. ..+|.++..+.+|..++++.|.+. .+|..+..+.++ +.
T Consensus 172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~L-rr 249 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNL-RR 249 (1255)
T ss_pred HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhh-he
Confidence 445555555444332 234555555666666666666666 666666666666 66
Q ss_pred EEcccCcCCCCCCcCccCCCCccEEEecCCcCC-----------------------Cc-cCC------------------
Q 039116 137 LDLSQNQLNGPFPSNFGVLKNLGVIDISENKLS-----------------------DD-IPN------------------ 174 (248)
Q Consensus 137 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~-----------------------~~-~p~------------------ 174 (248)
|++++|.|+ .+....+.+.+|++|+++.|+++ -+ +|.
T Consensus 250 LNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 250 LNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred eccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 666666665 22223334444445555554443 11 111
Q ss_pred -----------CCceEEccCCcceeeccCCcccCCCceeeecCCcccee
Q 039116 175 -----------SLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDNLCG 212 (248)
Q Consensus 175 -----------~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~ 212 (248)
.|+.|.++.|++...+.....++.++.||+.+||++..
T Consensus 329 ElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 329 ELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred ccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccC
Confidence 17778888888877777778889999999999999863
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=2.3e-21 Score=140.58 Aligned_cols=172 Identities=28% Similarity=0.490 Sum_probs=79.7
Q ss_pred CcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCCcEEE
Q 039116 34 LVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLD 113 (248)
Q Consensus 34 l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 113 (248)
+..++.|.+++|+++ ..|..++.+.+|+.|++.+|++. .+|..++++++|+.|++..|++. ..|..|+.++.|+.|+
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 334444444444444 33334444444445555544444 44444444455555554444444 2444444445555555
Q ss_pred cccCcCcc-ccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCccCCC------CceEEccCCcc
Q 039116 114 LSNNNLSG-TIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNS------LENLNLSFNHF 186 (248)
Q Consensus 114 l~~n~i~~-~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~------L~~L~l~~n~l 186 (248)
+.+|++.. .+|-.++.+..+ +.|+++.|+++ .+|...+.+++|+.|.+..|.+. ++|+. |++|.+.+|++
T Consensus 109 ltynnl~e~~lpgnff~m~tl-ralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTL-RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred ccccccccccCCcchhHHHHH-HHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 54444431 233334444444 44455555544 44444445555555555555443 33321 44445555555
Q ss_pred eeeccCCcc---cCCCceeeecCCccce
Q 039116 187 EGEVPIKGV---FNNSSAISLDGNDNLC 211 (248)
Q Consensus 187 ~~~~~~~~~---~~~l~~l~l~~n~~~~ 211 (248)
+-.+|.... ..+-..+.+..|||..
T Consensus 186 ~vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 186 TVLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred eecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 444332111 2223445667777765
No 7
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.74 E-value=1.2e-19 Score=146.73 Aligned_cols=204 Identities=23% Similarity=0.255 Sum_probs=134.7
Q ss_pred cccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecC-ccccccCCcccCCCCCcc
Q 039116 8 SLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQG-NKFLGEIPPSIGNLTLLT 86 (248)
Q Consensus 8 ~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~ 86 (248)
++++....++|..|+|+..-+.+|+.+++|+.|++++|+|+.+.|++|.+++++..|-+.+ |+|+....+.|+.+..|+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 3455667788888888866677788888888888888888877788888887777665554 767643333455555544
Q ss_pred EEEcccccccccCCc------------------------cccCCCCCcEEEcccCcC------c----------------
Q 039116 87 TLNFGENMLEESIPS------------------------SLGKCQNIALLDLSNNNL------S---------------- 120 (248)
Q Consensus 87 ~L~l~~n~~~~~~~~------------------------~l~~l~~L~~L~l~~n~i------~---------------- 120 (248)
.|.++-|.+.....+ .+..+..++++.+..|.+ .
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 444444444332222 333444444444333320 0
Q ss_pred ---------------------------------------cccch-hhhhccccccEEEcccCcCCCCCCcCccCCCCccE
Q 039116 121 ---------------------------------------GTIPT-EVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGV 160 (248)
Q Consensus 121 ---------------------------------------~~~~~-~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~ 160 (248)
..-|. .+..++++ +++++++|.++++-+.+|....+++.
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L-~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNL-RKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccc-eEeccCCCccchhhhhhhcchhhhhh
Confidence 00111 23455667 77888888888777777778888888
Q ss_pred EEecCCcCCCcc------CCCCceEEccCCcceeecc-CCcccCCCceeeecCCcccee
Q 039116 161 IDISENKLSDDI------PNSLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNLCG 212 (248)
Q Consensus 161 L~l~~n~i~~~~------p~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~~~ 212 (248)
|.|..|++...- -..|+.|++.+|+|+...| .+.....|.++.+-.||+.|.
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 888888775311 1348999999999998877 677778899999999999984
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=5.4e-20 Score=133.49 Aligned_cols=172 Identities=30% Similarity=0.502 Sum_probs=155.8
Q ss_pred hhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCc
Q 039116 6 VGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLL 85 (248)
Q Consensus 6 ~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 85 (248)
++++. +++.|.+++|.++ ..|+.++.+.+|+.|.+++|+|+ ..|..++.+++|++|+++.|++. ..|..|+++|.|
T Consensus 29 Lf~~s-~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMS-NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchh-hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 34666 8889999999998 78889999999999999999999 78999999999999999999988 889999999999
Q ss_pred cEEEcccccccc-cCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEec
Q 039116 86 TTLNFGENMLEE-SIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDIS 164 (248)
Q Consensus 86 ~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~ 164 (248)
+.||+..|++.. .+|..|-.++.|+.|++.+|.+. .+|..++.++++ +.|.+..|.+- ..|..++.+..|+.|.+.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l-qil~lrdndll-~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL-QILSLRDNDLL-SLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce-eEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence 999999998864 46777888899999999999998 899999999999 99999999988 789999999999999999
Q ss_pred CCcCCCccCCCCceEEccCCc
Q 039116 165 ENKLSDDIPNSLENLNLSFNH 185 (248)
Q Consensus 165 ~n~i~~~~p~~L~~L~l~~n~ 185 (248)
+|+++ .+|+.+..+++-+++
T Consensus 182 gnrl~-vlppel~~l~l~~~k 201 (264)
T KOG0617|consen 182 GNRLT-VLPPELANLDLVGNK 201 (264)
T ss_pred cceee-ecChhhhhhhhhhhH
Confidence 99998 788778777776653
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=1.9e-20 Score=151.78 Aligned_cols=198 Identities=33% Similarity=0.506 Sum_probs=138.8
Q ss_pred CchhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCC
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGN 81 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 81 (248)
+|+.+.+.. .++.+++++|.+. .++++++.+..+..++..+|++. ..|+++..+.++..+++.+|.+. ..|+..-.
T Consensus 106 lp~~i~s~~-~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~ 181 (565)
T KOG0472|consen 106 LPEQIGSLI-SLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA 181 (565)
T ss_pred ccHHHhhhh-hhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH
Confidence 455555555 5666666666655 55555666666666666666666 45555556666666666666665 33333333
Q ss_pred CCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCcc-CCCCccE
Q 039116 82 LTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFG-VLKNLGV 160 (248)
Q Consensus 82 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~-~~~~L~~ 160 (248)
|..|+.+|...|.++. +|+.++.+.+|..|++..|++. .+| .+.++..+ .+++++.|.++ ..|.... +++++.+
T Consensus 182 m~~L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L-~Elh~g~N~i~-~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLET-LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLL-KELHVGENQIE-MLPAEHLKHLNSLLV 256 (565)
T ss_pred HHHHHhcccchhhhhc-CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHH-HHHHhcccHHH-hhHHHHhccccccee
Confidence 6777777777777663 6777777777777777777776 666 56666666 77777777777 5555544 7899999
Q ss_pred EEecCCcCCCccCC------CCceEEccCCcceeeccCCcccCCCceeeecCCccc
Q 039116 161 IDISENKLSDDIPN------SLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDNL 210 (248)
Q Consensus 161 L~l~~n~i~~~~p~------~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~ 210 (248)
||+..|+++ +.|. +|++||+++|.+++.++..+.+ .|+.+.+.|||--
T Consensus 257 LDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 257 LDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred eeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence 999999998 6663 5899999999999988888888 8999999999853
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=9.4e-19 Score=142.06 Aligned_cols=81 Identities=36% Similarity=0.573 Sum_probs=58.5
Q ss_pred hhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCccCC------------------------------C
Q 039116 126 EVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPN------------------------------S 175 (248)
Q Consensus 126 ~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~------------------------------~ 175 (248)
.+..++.+ ..|++++|.+. ..|..++.+..|+.++++.|++. ..|. .
T Consensus 430 ~l~~l~kL-t~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 430 ELSQLQKL-TFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred HHHhhhcc-eeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 33445555 66777777776 56777777777888888888775 2221 2
Q ss_pred CceEEccCCcceeeccCCcccCCCceeeecCCcc
Q 039116 176 LENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDN 209 (248)
Q Consensus 176 L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~ 209 (248)
|..||+.+|.+...+|..+.+.+++.|.++|||.
T Consensus 507 L~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 507 LTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred cceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence 7788888888887777788888888888888863
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.68 E-value=9.9e-16 Score=145.62 Aligned_cols=115 Identities=23% Similarity=0.286 Sum_probs=66.3
Q ss_pred CcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCccC---CCCceEEccCCc
Q 039116 109 IALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIP---NSLENLNLSFNH 185 (248)
Q Consensus 109 L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p---~~L~~L~l~~n~ 185 (248)
|+.|++.+|.....+|..++.+++| +.|++++|..-+.+|... .+++|+.|++++|.....+| ..+++|++++|.
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L-~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKL-EHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG 857 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCC-CEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCC
Confidence 3344444443333444445555555 555555543222344332 45555666666554333333 457888888888
Q ss_pred ceeeccCCcccCCCceeeecCCcccee---------ccCccccCCCCcc
Q 039116 186 FEGEVPIKGVFNNSSAISLDGNDNLCG---------GISELHLSTCSIK 225 (248)
Q Consensus 186 l~~~~~~~~~~~~l~~l~l~~n~~~~~---------~l~~l~~~~c~~~ 225 (248)
++..+.....+++|+.|++++|+.+.. .+..+++++|...
T Consensus 858 i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 858 IEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred CccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 876555667788999999998766653 3445577777643
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.67 E-value=3.8e-18 Score=145.73 Aligned_cols=160 Identities=33% Similarity=0.565 Sum_probs=84.0
Q ss_pred CchhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCcccc-ccCCcccC
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFL-GEIPPSIG 80 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~ 80 (248)
.|.++.+|. +++.|.|....+. .+|+.++.+.+|++|.+.+|++. .+-..+..+|.|+.+.+.+|.+. .-+|..+-
T Consensus 24 FP~~v~qMt-~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF 100 (1255)
T KOG0444|consen 24 FPHDVEQMT-QMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF 100 (1255)
T ss_pred CchhHHHhh-heeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhc
Confidence 355555665 6666666666555 55666666666666666666555 33334445555555555555543 12344444
Q ss_pred CCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhh-hhccccccEEEcccCcCCCCCCcCccCCCCcc
Q 039116 81 NLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEV-IRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLG 159 (248)
Q Consensus 81 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~-~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~ 159 (248)
.+..|++||+++|++.. .|..+..-.++-.|++++|+|. .+|..+ -++..+ -.||+++|++. .+|.....+.+|+
T Consensus 101 ~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDL-LfLDLS~NrLe-~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDL-LFLDLSNNRLE-MLPPQIRRLSMLQ 176 (1255)
T ss_pred ccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhH-hhhccccchhh-hcCHHHHHHhhhh
Confidence 55555555555555552 4555555555555555555554 444332 244444 35555555554 3444444455555
Q ss_pred EEEecCCcC
Q 039116 160 VIDISENKL 168 (248)
Q Consensus 160 ~L~l~~n~i 168 (248)
+|.|++|.+
T Consensus 177 tL~Ls~NPL 185 (1255)
T KOG0444|consen 177 TLKLSNNPL 185 (1255)
T ss_pred hhhcCCChh
Confidence 555555543
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.65 E-value=2.9e-15 Score=142.48 Aligned_cols=111 Identities=26% Similarity=0.381 Sum_probs=50.7
Q ss_pred chhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCC
Q 039116 3 PEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNL 82 (248)
Q Consensus 3 p~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 82 (248)
|+.+..++.+|+.|.+.++.+. .+|..| ...+|+.|++.++++. ..+..+..+++|+.++++++.....+| .++.+
T Consensus 581 p~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l 656 (1153)
T PLN03210 581 PEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMA 656 (1153)
T ss_pred CcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccC
Confidence 3344444444555555444443 344443 2344555555555544 334444445555555555443222333 24444
Q ss_pred CCccEEEcccccccccCCccccCCCCCcEEEcccC
Q 039116 83 TLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNN 117 (248)
Q Consensus 83 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 117 (248)
++|++|++.+|.....+|..+..+++|+.|++.+|
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred CcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 55555555544433334444444555555555443
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=9.2e-16 Score=138.28 Aligned_cols=195 Identities=23% Similarity=0.395 Sum_probs=123.2
Q ss_pred CCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEc
Q 039116 11 TQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNF 90 (248)
Q Consensus 11 ~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 90 (248)
++++.|++++|.++ .+|..+. ++|++|++++|+++ .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 47888888888887 5666554 57888888888887 4565442 36888888888877 5555443 46888888
Q ss_pred ccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCC
Q 039116 91 GENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSD 170 (248)
Q Consensus 91 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 170 (248)
+.|.++. +|..+. .+|+.|++++|+++ .+|..+. ..+ +.|++++|.++ .+|..+ .++|+.|++++|.+++
T Consensus 270 s~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL-~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 270 FHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP--SGI-THLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS 339 (754)
T ss_pred cCCccCc-cccccC--CCCcEEECCCCccc-cCcccch--hhH-HHHHhcCCccc-cCCccc--cccceeccccCCcccc
Confidence 8888874 565443 47888888888887 4554332 234 66777777776 344322 2567777777777653
Q ss_pred ---ccCCCCceEEccCCcceeeccCCcccCCCceeeecCCcccee-------ccCccccCCCCcccc
Q 039116 171 ---DIPNSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDNLCG-------GISELHLSTCSIKES 227 (248)
Q Consensus 171 ---~~p~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~-------~l~~l~~~~c~~~~~ 227 (248)
.+|++|+.|++++|+++..+. ...++|+.|++++|. +.. .+..+++++|.+...
T Consensus 340 LP~~l~~sL~~L~Ls~N~L~~LP~--~lp~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N~L~~L 403 (754)
T PRK15370 340 LPASLPPELQVLDVSKNQITVLPE--TLPPTITTLDVSRNA-LTNLPENLPAALQIMQASRNNLVRL 403 (754)
T ss_pred CChhhcCcccEEECCCCCCCcCCh--hhcCCcCEEECCCCc-CCCCCHhHHHHHHHHhhccCCcccC
Confidence 123457777777777664322 223566777777663 221 233455556655443
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.61 E-value=3e-16 Score=129.78 Aligned_cols=109 Identities=24% Similarity=0.241 Sum_probs=45.1
Q ss_pred CccEEEcccccccc----CchhhhhcCcCCcEEEcCCCcCCC------CCChhhcCCccccEEEecCccccccCCcccCC
Q 039116 12 QLKILSVENNQFFG----NIPSGLRNLVNLELLHLGDNQFKG------QIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGN 81 (248)
Q Consensus 12 ~L~~L~l~~~~i~~----~~p~~~~~l~~L~~L~l~~~~i~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 81 (248)
+|+.++++++.+.. .++..+...+.+++++++++.+.. ..+..+..+++|+.|++++|.+....+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 45555555555431 122333344445555555544431 11223334445555555555443222222222
Q ss_pred C---CCccEEEccccccccc----CCccccCC-CCCcEEEcccCcCc
Q 039116 82 L---TLLTTLNFGENMLEES----IPSSLGKC-QNIALLDLSNNNLS 120 (248)
Q Consensus 82 l---~~L~~L~l~~n~~~~~----~~~~l~~l-~~L~~L~l~~n~i~ 120 (248)
+ ++|+.|++++|.+... +...+..+ ++|+.+++.+|.++
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 2 2255555555544311 11222333 44555555555444
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.59 E-value=2.8e-16 Score=129.96 Aligned_cols=204 Identities=26% Similarity=0.362 Sum_probs=149.0
Q ss_pred chhhhcccCCccEEEcccccccc------CchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCcc---ccEEEecCccccc
Q 039116 3 PEAVGSLSTQLKILSVENNQFFG------NIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLK---LQRLTLQGNKFLG 73 (248)
Q Consensus 3 p~~~~~~~~~L~~L~l~~~~i~~------~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~---L~~L~l~~n~l~~ 73 (248)
++.+...+ ++++++++++.+.+ .++..+..+++|+.|++++|.+....+..+..+.+ |++|++++|++.+
T Consensus 44 ~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~ 122 (319)
T cd00116 44 ASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD 122 (319)
T ss_pred HHHHhhCC-CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence 34444555 79999999987762 23456778889999999999998656666655555 9999999998762
Q ss_pred ----cCCcccCCC-CCccEEEccccccccc----CCccccCCCCCcEEEcccCcCccc----cchhhhhccccccEEEcc
Q 039116 74 ----EIPPSIGNL-TLLTTLNFGENMLEES----IPSSLGKCQNIALLDLSNNNLSGT----IPTEVIRLSSLSIYLDLS 140 (248)
Q Consensus 74 ----~~~~~l~~l-~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~i~~~----~~~~~~~~~~ll~~L~l~ 140 (248)
.+...+..+ ++|+.|++.+|.++.. ....+..+.+|++|++.+|.+++. ++..+...+.+ ++|+++
T Consensus 123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L-~~L~L~ 201 (319)
T cd00116 123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL-EVLDLN 201 (319)
T ss_pred HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCC-CEEecc
Confidence 223345566 8999999999998832 234556678899999999998742 22334445688 999999
Q ss_pred cCcCCCC----CCcCccCCCCccEEEecCCcCCC--------ccC---CCCceEEccCCccee--ecc---CCcccCCCc
Q 039116 141 QNQLNGP----FPSNFGVLKNLGVIDISENKLSD--------DIP---NSLENLNLSFNHFEG--EVP---IKGVFNNSS 200 (248)
Q Consensus 141 ~n~i~~~----~~~~~~~~~~L~~L~l~~n~i~~--------~~p---~~L~~L~l~~n~l~~--~~~---~~~~~~~l~ 200 (248)
+|.+++. +...+..+++|+.|++++|.+++ ..+ ..|++|++++|.+++ ..+ ....+++++
T Consensus 202 ~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~ 281 (319)
T cd00116 202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL 281 (319)
T ss_pred CCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCcc
Confidence 9988743 23345678899999999999874 122 579999999999972 222 334457899
Q ss_pred eeeecCCc
Q 039116 201 AISLDGND 208 (248)
Q Consensus 201 ~l~l~~n~ 208 (248)
.+++++|.
T Consensus 282 ~l~l~~N~ 289 (319)
T cd00116 282 ELDLRGNK 289 (319)
T ss_pred EEECCCCC
Confidence 99999985
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.58 E-value=3.4e-17 Score=132.68 Aligned_cols=206 Identities=26% Similarity=0.296 Sum_probs=141.8
Q ss_pred CCchh-hhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCC-CcCCCCCChhhcCCccccEEEe------------
Q 039116 1 MLPEA-VGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGD-NQFKGQIPGTIGDLLKLQRLTL------------ 66 (248)
Q Consensus 1 ~lp~~-~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~l------------ 66 (248)
.||+. |+.+. +||+|||++|.|..+.|++|.+++.+.+|-+.+ |+|+....+.|.++..++.|.+
T Consensus 81 ~iP~~aF~~l~-~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~a 159 (498)
T KOG4237|consen 81 SIPPGAFKTLH-RLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDA 159 (498)
T ss_pred cCChhhccchh-hhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence 36754 45555 999999999999999999999999988877766 8998655556655555554444
Q ss_pred ------------cCccccccCCcccCCCCCccEEEccccccc--------------------------------------
Q 039116 67 ------------QGNKFLGEIPPSIGNLTLLTTLNFGENMLE-------------------------------------- 96 (248)
Q Consensus 67 ------------~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-------------------------------------- 96 (248)
..|.+..+.-.++..+..++.+.+..|.+.
T Consensus 160 l~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~ 239 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQE 239 (498)
T ss_pred HHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhccc
Confidence 444443222224444445555544333310
Q ss_pred -----------------------ccCC-ccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCc
Q 039116 97 -----------------------ESIP-SSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNF 152 (248)
Q Consensus 97 -----------------------~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~ 152 (248)
...| .-|..+++|+.|++++|+++..-+..+.....+ ++|.+.+|.+...-...|
T Consensus 240 ~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l-~eL~L~~N~l~~v~~~~f 318 (498)
T KOG4237|consen 240 DARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL-QELYLTRNKLEFVSSGMF 318 (498)
T ss_pred chhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh-hhhhcCcchHHHHHHHhh
Confidence 0000 124568899999999999997777777788888 899999999986667788
Q ss_pred cCCCCccEEEecCCcCCCccCC------CCceEEccCCcceeeccCCcccCCCceeeecCCc
Q 039116 153 GVLKNLGVIDISENKLSDDIPN------SLENLNLSFNHFEGEVPIKGVFNNSSAISLDGND 208 (248)
Q Consensus 153 ~~~~~L~~L~l~~n~i~~~~p~------~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~ 208 (248)
.++..|++|+|.+|+|+...|. +|.+|.+..|.+....-..|...+|++=...+||
T Consensus 319 ~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~ 380 (498)
T KOG4237|consen 319 QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP 380 (498)
T ss_pred hccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC
Confidence 8999999999999999876664 3888888888877554444444444333344444
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=3.1e-17 Score=145.04 Aligned_cols=202 Identities=28% Similarity=0.418 Sum_probs=151.5
Q ss_pred CchhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCc----
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPP---- 77 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---- 77 (248)
+|+.++... +|+.++..+|.+. .+|..+....+|+.+.+..|.+. ..|....++++|++|++..|.+. ..|+
T Consensus 256 lp~wi~~~~-nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~ 331 (1081)
T KOG0618|consen 256 LPEWIGACA-NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLA 331 (1081)
T ss_pred chHHHHhcc-cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHh
Confidence 566667777 8888888888875 66777777777777777777777 44445556677777777777654 2221
Q ss_pred ----------------------ccCCCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchh-hhhccccc
Q 039116 78 ----------------------SIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTE-VIRLSSLS 134 (248)
Q Consensus 78 ----------------------~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-~~~~~~ll 134 (248)
.-..++.|+.|++.+|.++....+.+..+.+|+.|++.+|++. .+|.. +.++..+
T Consensus 332 v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~L- 409 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEEL- 409 (1081)
T ss_pred hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHh-
Confidence 1113456888899999998877788888999999999999998 67754 5677888
Q ss_pred cEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCccCC-----CCceEEccCCcceeec-cCCcccCCCceeeecCCc
Q 039116 135 IYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPN-----SLENLNLSFNHFEGEV-PIKGVFNNSSAISLDGND 208 (248)
Q Consensus 135 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~-----~L~~L~l~~n~l~~~~-~~~~~~~~l~~l~l~~n~ 208 (248)
++|+++||.++ .+|.....++.|++|...+|++. ..|. .|+.+|++.|.++-.. +..-.-++|++||++||.
T Consensus 410 eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 410 EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 99999999998 67888889999999999999987 5553 3899999999987432 222222789999999998
Q ss_pred cce
Q 039116 209 NLC 211 (248)
Q Consensus 209 ~~~ 211 (248)
|.-
T Consensus 488 ~l~ 490 (1081)
T KOG0618|consen 488 RLV 490 (1081)
T ss_pred ccc
Confidence 753
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.58 E-value=4.5e-15 Score=133.83 Aligned_cols=186 Identities=24% Similarity=0.361 Sum_probs=113.6
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+|++|++++|.++ .+|..+. +.|+.|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|+++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY 291 (754)
T ss_pred CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence 7888899888887 5666554 46888888888887 5565543 46788888888777 4455443 467777777
Q ss_pred cccccccCCcccc-------------------CCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCc
Q 039116 92 ENMLEESIPSSLG-------------------KCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNF 152 (248)
Q Consensus 92 ~n~~~~~~~~~l~-------------------~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~ 152 (248)
+|.++. +|..+. ..++|+.|++.+|.++ .+|..+. +.+ +.|++++|.++ .+|..+
T Consensus 292 ~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL-~~L~Ls~N~L~-~LP~~l 365 (754)
T PRK15370 292 DNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASLP--PEL-QVLDVSKNQIT-VLPETL 365 (754)
T ss_pred CCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChhhc--Ccc-cEEECCCCCCC-cCChhh
Confidence 777764 333221 1134555666666555 3443331 345 66677766666 344433
Q ss_pred cCCCCccEEEecCCcCCCccC----CCCceEEccCCcceeecc----CCcccCCCceeeecCCccceeccC
Q 039116 153 GVLKNLGVIDISENKLSDDIP----NSLENLNLSFNHFEGEVP----IKGVFNNSSAISLDGNDNLCGGIS 215 (248)
Q Consensus 153 ~~~~~L~~L~l~~n~i~~~~p----~~L~~L~l~~n~l~~~~~----~~~~~~~l~~l~l~~n~~~~~~l~ 215 (248)
.++|+.|++++|.++. +| ..|+.|++++|++++.+. .....+.+..+++.+||.-...++
T Consensus 366 --p~~L~~LdLs~N~Lt~-LP~~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~ 433 (754)
T PRK15370 366 --PPTITTLDVSRNALTN-LPENLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQ 433 (754)
T ss_pred --cCCcCEEECCCCcCCC-CCHhHHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHH
Confidence 2566777777777663 33 246667777777764332 223346677788888875444333
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=3.8e-14 Score=127.60 Aligned_cols=170 Identities=24% Similarity=0.310 Sum_probs=74.7
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+|+.|++.+|.++ .+|. ..++|++|++++|+++ .+|.. .++|+.|++.+|.+. .+|.. ..+|+.|++.
T Consensus 223 ~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence 4555666555555 3332 2355666666666555 23321 234455555555443 12211 1234444444
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchhhhh-----------------ccccccEEEcccCcCCCCCCcCccC
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIR-----------------LSSLSIYLDLSQNQLNGPFPSNFGV 154 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~-----------------~~~ll~~L~l~~n~i~~~~~~~~~~ 154 (248)
+|.++. +|.. .++|+.|++++|+++ .+|..... ...| ++|++++|.++ .+|..
T Consensus 291 ~N~Lt~-LP~~---p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~L-q~LdLS~N~Ls-~LP~l--- 360 (788)
T PRK15387 291 GNQLTS-LPVL---PPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPTLPSGL-QELSVSDNQLA-SLPTL--- 360 (788)
T ss_pred CCcccc-cccc---ccccceeECCCCccc-cCCCCcccccccccccCcccccccccccc-ceEecCCCccC-CCCCC---
Confidence 444442 2221 234555555555544 22221100 1233 45555555554 23321
Q ss_pred CCCccEEEecCCcCCCccC---CCCceEEccCCcceeeccCCcccCCCceeeecCC
Q 039116 155 LKNLGVIDISENKLSDDIP---NSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGN 207 (248)
Q Consensus 155 ~~~L~~L~l~~n~i~~~~p---~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n 207 (248)
.++|+.|++++|++++ +| ..|+.|++++|++++.+. ..++|+.|++++|
T Consensus 361 p~~L~~L~Ls~N~L~~-LP~l~~~L~~LdLs~N~Lt~LP~---l~s~L~~LdLS~N 412 (788)
T PRK15387 361 PSELYKLWAYNNRLTS-LPALPSGLKELIVSGNRLTSLPV---LPSELKELMVSGN 412 (788)
T ss_pred Ccccceehhhcccccc-CcccccccceEEecCCcccCCCC---cccCCCEEEccCC
Confidence 2334445555555442 22 235556666666553222 1245566666665
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=8.8e-14 Score=125.24 Aligned_cols=183 Identities=25% Similarity=0.319 Sum_probs=111.0
Q ss_pred cCCccEEEccccccccCchhhhhc-----------------CcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCcccc
Q 039116 10 STQLKILSVENNQFFGNIPSGLRN-----------------LVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFL 72 (248)
Q Consensus 10 ~~~L~~L~l~~~~i~~~~p~~~~~-----------------l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~ 72 (248)
+++|++|++++|.++. +|....+ .+.|+.|++++|+++ .+|.. .++|+.|++++|.+.
T Consensus 241 p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 241 PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA 315 (788)
T ss_pred CCCCcEEEecCCccCc-ccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-ccccc---ccccceeECCCCccc
Confidence 3477777777777763 3332110 123555666666666 33432 357888888888776
Q ss_pred ccCCcccCC----------------C-CCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhcccccc
Q 039116 73 GEIPPSIGN----------------L-TLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSI 135 (248)
Q Consensus 73 ~~~~~~l~~----------------l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~ 135 (248)
. +|..... + .+|+.|++++|.++. +|.. ..+|+.|++..|.++ .+|.. ...+ +
T Consensus 316 ~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L-~ 385 (788)
T PRK15387 316 S-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGL-K 385 (788)
T ss_pred c-CCCCcccccccccccCccccccccccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---cccc-c
Confidence 3 2321110 0 245566666666553 3322 234555666666665 34432 2345 7
Q ss_pred EEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCccC---CCCceEEccCCcceeeccCCcccCCCceeeecCCcccee
Q 039116 136 YLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIP---NSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDNLCG 212 (248)
Q Consensus 136 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p---~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~ 212 (248)
.|++++|.++ .+|.. .++|+.|++++|++++ +| ..|+.|++++|+++..+..+..+++++.+++++|+ +++
T Consensus 386 ~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~-Ls~ 459 (788)
T PRK15387 386 ELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP-LSE 459 (788)
T ss_pred eEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCC-CCc
Confidence 7888888887 34432 3578888888888874 44 35888899999988655466778899999999996 444
Q ss_pred c
Q 039116 213 G 213 (248)
Q Consensus 213 ~ 213 (248)
.
T Consensus 460 ~ 460 (788)
T PRK15387 460 R 460 (788)
T ss_pred h
Confidence 3
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.48 E-value=2.7e-15 Score=132.92 Aligned_cols=199 Identities=31% Similarity=0.390 Sum_probs=154.6
Q ss_pred CchhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhc-------------------------
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIG------------------------- 56 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~------------------------- 56 (248)
+|..++.+. .|+.|++..|.+. .+|....++..|++|+++.|++. ..|+.+.
T Consensus 279 lp~ri~~~~-~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e 355 (1081)
T KOG0618|consen 279 LPLRISRIT-SLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE 355 (1081)
T ss_pred hHHHHhhhh-hHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccc
Confidence 566777777 7888888888777 66666677788888888888777 4443221
Q ss_pred -CCccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhcccccc
Q 039116 57 -DLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSI 135 (248)
Q Consensus 57 -~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~ 135 (248)
.++.|+.|++.+|.+++.....+..++.|+.|+|++|++.......+.+++.|++|++++|+++ .+|..+..+..+ +
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L-~ 433 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL-H 433 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh-H
Confidence 1345778888899988777778889999999999999998755566889999999999999998 899999999999 8
Q ss_pred EEEcccCcCCCCCCcCccCCCCccEEEecCCcCCC-----ccC-CCCceEEccCCcc-eeeccCCcccCCCceeeecCC
Q 039116 136 YLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSD-----DIP-NSLENLNLSFNHF-EGEVPIKGVFNNSSAISLDGN 207 (248)
Q Consensus 136 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~-----~~p-~~L~~L~l~~n~l-~~~~~~~~~~~~l~~l~l~~n 207 (248)
.|...+|.+. .+| .+..++.|+.+|++.|+++. ..| +.|++||++||.- .-.-..+..+..+...+++-+
T Consensus 434 tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 434 TLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred HHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 9999999998 788 78899999999999999875 345 7799999999963 211223444555555555544
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.38 E-value=2.5e-14 Score=121.09 Aligned_cols=174 Identities=30% Similarity=0.508 Sum_probs=148.1
Q ss_pred CCchhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccC
Q 039116 1 MLPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIG 80 (248)
Q Consensus 1 ~lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 80 (248)
++|+.+..+- .|+.+.++.|.+. .+|..+.++..|+.++++.|++. ..|..+..+| |+.|-+++|+++ .+|+.++
T Consensus 89 elp~~~~~f~-~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig 163 (722)
T KOG0532|consen 89 ELPEEACAFV-SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIG 163 (722)
T ss_pred cCchHHHHHH-HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccc
Confidence 3677777777 7888888888888 78889999999999999999999 7788887776 899999999988 7888888
Q ss_pred CCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccE
Q 039116 81 NLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGV 160 (248)
Q Consensus 81 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~ 160 (248)
..+.|..|+.+.|.+.. .|..+..+.+|+.+.+..|++. .+|..+..++ | ..||++.|++. .+|-.|.++.+|++
T Consensus 164 ~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-L-i~lDfScNkis-~iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-L-IRLDFSCNKIS-YLPVDFRKMRHLQV 238 (722)
T ss_pred cchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-e-eeeecccCcee-ecchhhhhhhhhee
Confidence 88999999999999885 7778888899999999999988 7888888655 4 68999999999 78999999999999
Q ss_pred EEecCCcCCCccCCC---------CceEEccCCc
Q 039116 161 IDISENKLSDDIPNS---------LENLNLSFNH 185 (248)
Q Consensus 161 L~l~~n~i~~~~p~~---------L~~L~l~~n~ 185 (248)
|-|.+|.++ +.|.. .++|+...++
T Consensus 239 l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 239 LQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 999999997 55532 5677776664
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.27 E-value=1.2e-11 Score=110.74 Aligned_cols=111 Identities=36% Similarity=0.654 Sum_probs=85.8
Q ss_pred CcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCccCC------CCceEEcc
Q 039116 109 IALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPN------SLENLNLS 182 (248)
Q Consensus 109 L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~------~L~~L~l~ 182 (248)
++.|++.+|.+.+.+|..++.++.| +.|++++|.+.+..|..++.+++|+.|++++|++++.+|. .|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L-~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHL-QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCC-CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 6778888888887888888888888 8888888888877887788888888888888888877764 37888888
Q ss_pred CCcceeecc--CCcccCCCceeeecCCccceeccCccccCCCC
Q 039116 183 FNHFEGEVP--IKGVFNNSSAISLDGNDNLCGGISELHLSTCS 223 (248)
Q Consensus 183 ~n~l~~~~~--~~~~~~~l~~l~l~~n~~~~~~l~~l~~~~c~ 223 (248)
+|+++|.+| ....+.++..+++.+|+.+|+ .|. +..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~-~p~--l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG-IPG--LRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccC-CCC--CCCCc
Confidence 888888777 222234567899999999997 333 35675
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=3.9e-13 Score=114.00 Aligned_cols=169 Identities=30% Similarity=0.442 Sum_probs=107.5
Q ss_pred ccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEccc
Q 039116 13 LKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGE 92 (248)
Q Consensus 13 L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 92 (248)
....|++.|.+. ++|..+..+..|+.+.+..|.+. ..|.++.++..|.+++++.|+++ .+|..+..++ |+.|-+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 344666666665 66666666666666666666666 55666666666777777777666 5555555555 66666666
Q ss_pred ccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCcc
Q 039116 93 NMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDI 172 (248)
Q Consensus 93 n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 172 (248)
|+++. +|..++...+|.+++...|.+. .+|..++.+..+ +.|.++.|++. .+|..++.++ |..||++.|.++ .+
T Consensus 153 Nkl~~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl-r~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~i 226 (722)
T KOG0532|consen 153 NKLTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL-RDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YL 226 (722)
T ss_pred Ccccc-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-HHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ec
Confidence 66664 5666666666677777777666 666666666666 66666666666 4555555443 666777777766 44
Q ss_pred CC------CCceEEccCCcceeecc
Q 039116 173 PN------SLENLNLSFNHFEGEVP 191 (248)
Q Consensus 173 p~------~L~~L~l~~n~l~~~~~ 191 (248)
|- .|++|.|.+|.+++.+.
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred chhhhhhhhheeeeeccCCCCCChH
Confidence 42 36667777777764433
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.19 E-value=3.4e-11 Score=102.67 Aligned_cols=185 Identities=36% Similarity=0.489 Sum_probs=110.4
Q ss_pred EEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCc-cccEEEecCccccccCCcccCCCCCccEEEccccc
Q 039116 16 LSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLL-KLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENM 94 (248)
Q Consensus 16 L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 94 (248)
+++..+.+. .....+..++.++.+++.++.+. ..+....... +|+.|++++|.+. .++..++.+++|+.|++..|.
T Consensus 98 l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 98 LDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 555555543 22333444566777777777776 3343444442 6777777777766 444556667777777777777
Q ss_pred ccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCC----
Q 039116 95 LEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSD---- 170 (248)
Q Consensus 95 ~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~---- 170 (248)
+.. .+......+.|+.+++++|++. .+|........+ +++.+++|.+. ..+..+....++..+.+.+|++..
T Consensus 175 l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L-~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~ 250 (394)
T COG4886 175 LSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL-EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPES 250 (394)
T ss_pred hhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhh-hhhhhcCCcce-ecchhhhhcccccccccCCceeeeccch
Confidence 764 4444445666777777777776 565544444445 66777777543 344555666666666666666543
Q ss_pred -ccCCCCceEEccCCcceeeccCCcccCCCceeeecCCc
Q 039116 171 -DIPNSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGND 208 (248)
Q Consensus 171 -~~p~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~ 208 (248)
..+..+++|++++|+++.... .....+++.+++++|.
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred hccccccceecccccccccccc-ccccCccCEEeccCcc
Confidence 112336777777777764444 5666667777777653
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=2.3e-11 Score=103.72 Aligned_cols=178 Identities=31% Similarity=0.506 Sum_probs=137.1
Q ss_pred hhcccCCccEEEccccccccCchhhhhcCc-CCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCC
Q 039116 6 VGSLSTQLKILSVENNQFFGNIPSGLRNLV-NLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTL 84 (248)
Q Consensus 6 ~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 84 (248)
+..+. .++.+++.++.++ .++.....+. +|+.|++++|++. ..|.....+++|+.|++++|.+. .++...+..+.
T Consensus 112 ~~~~~-~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~ 187 (394)
T COG4886 112 LLELT-NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSN 187 (394)
T ss_pred hhccc-ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhh
Confidence 34444 7889999999988 6666666664 8999999999999 55566778999999999999988 55555557889
Q ss_pred ccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEec
Q 039116 85 LTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDIS 164 (248)
Q Consensus 85 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~ 164 (248)
|+.|++++|.++. +|........|+.+.+.+|.+. ..+..+.....+ ..+.+.+|.+. ..+..++.++.++.|+++
T Consensus 188 L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l-~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 188 LNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL-SGLELSNNKLE-DLPESIGNLSNLETLDLS 263 (394)
T ss_pred hhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc-cccccCCceee-eccchhccccccceeccc
Confidence 9999999999985 5655455566889999998644 556667777777 77888888877 346677788889999999
Q ss_pred CCcCCCccC----CCCceEEccCCcceeecc
Q 039116 165 ENKLSDDIP----NSLENLNLSFNHFEGEVP 191 (248)
Q Consensus 165 ~n~i~~~~p----~~L~~L~l~~n~l~~~~~ 191 (248)
+|.++...+ ..++++++++|.+....+
T Consensus 264 ~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 264 NNQISSISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccccccccccCccCEEeccCccccccch
Confidence 999884322 458999999988765433
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.15 E-value=1.4e-10 Score=104.12 Aligned_cols=108 Identities=33% Similarity=0.563 Sum_probs=88.6
Q ss_pred CCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCCcEEEcc
Q 039116 36 NLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLS 115 (248)
Q Consensus 36 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 115 (248)
.++.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..+..+++|+.|++.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCcCccccchhhhhc-cccccEEEcccCcC
Q 039116 116 NNNLSGTIPTEVIRL-SSLSIYLDLSQNQL 144 (248)
Q Consensus 116 ~n~i~~~~~~~~~~~-~~ll~~L~l~~n~i 144 (248)
+|.+++.+|..++.. .++ ..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~-~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHR-ASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccC-ceEEecCCcc
Confidence 888888888777653 344 6778887754
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.6e-11 Score=101.36 Aligned_cols=198 Identities=24% Similarity=0.233 Sum_probs=121.9
Q ss_pred hcccCCccEEEccccccccCch--hhhhcCcCCcEEEcCCCcCCCC--CChhhcCCccccEEEecCccccccCCcc-cCC
Q 039116 7 GSLSTQLKILSVENNQFFGNIP--SGLRNLVNLELLHLGDNQFKGQ--IPGTIGDLLKLQRLTLQGNKFLGEIPPS-IGN 81 (248)
Q Consensus 7 ~~~~~~L~~L~l~~~~i~~~~p--~~~~~l~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~ 81 (248)
+++. +|+.+.+.++.+. ..+ +....+++++.|++++|-+..- +..-..++|+|+.|+++.|++.....+. -..
T Consensus 118 sn~k-kL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLK-KLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHH-hhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 3444 7888888888766 333 3556778888888888866522 2233456788888888888775322221 224
Q ss_pred CCCccEEEccccccccc-CCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCC--cCccCCCCc
Q 039116 82 LTLLTTLNFGENMLEES-IPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFP--SNFGVLKNL 158 (248)
Q Consensus 82 l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~--~~~~~~~~L 158 (248)
++.|+.|.++.|+++.. +-..+..+++|..|++.+|.........-.-+..+ +.|++++|.+-. .+ ...+.++.|
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L-~~LdLs~N~li~-~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL-QELDLSNNNLID-FDQGYKVGTLPGL 273 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH-hhccccCCcccc-cccccccccccch
Confidence 67788888888877632 22234557788888888874211221122234455 778888887753 33 345678888
Q ss_pred cEEEecCCcCCCc-cC-----------CCCceEEccCCcceeecc--CCcccCCCceeeecCCc
Q 039116 159 GVIDISENKLSDD-IP-----------NSLENLNLSFNHFEGEVP--IKGVFNNSSAISLDGND 208 (248)
Q Consensus 159 ~~L~l~~n~i~~~-~p-----------~~L~~L~l~~n~l~~~~~--~~~~~~~l~~l~l~~n~ 208 (248)
..|+++.|.+++. .| ..|++|++..|++..... ....+++++-+.+..|+
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 8888888887641 11 237888888887764433 33344556666655554
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=2.1e-11 Score=96.50 Aligned_cols=122 Identities=29% Similarity=0.343 Sum_probs=94.4
Q ss_pred CCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEE
Q 039116 82 LTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVI 161 (248)
Q Consensus 82 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L 161 (248)
+..|+++|++.|.++. +..+..-.+.++.|+++.|++. .+- .+..++++ +.||+++|.++ ....+-..+-+.++|
T Consensus 283 Wq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L-~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQL-QLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchhh-hhhhhhhccceeEEecccccee-eeh-hhhhcccc-eEeecccchhH-hhhhhHhhhcCEeee
Confidence 4568889999998885 6667777788999999999887 333 36778888 88999999887 445555567888899
Q ss_pred EecCCcCCCccCC-----CCceEEccCCcceeecc--CCcccCCCceeeecCCcc
Q 039116 162 DISENKLSDDIPN-----SLENLNLSFNHFEGEVP--IKGVFNNSSAISLDGNDN 209 (248)
Q Consensus 162 ~l~~n~i~~~~p~-----~L~~L~l~~n~l~~~~~--~~~~~~~l~~l~l~~n~~ 209 (248)
.+++|.+. .+.. +|..||+.+|+|..... ..+.+|.|+.+.+.+||-
T Consensus 358 ~La~N~iE-~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 358 KLAQNKIE-TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ehhhhhHh-hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 99999886 3332 48889999999885533 678889999999999973
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=4.8e-11 Score=89.29 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=3.0
Q ss_pred CCccccEEEecCcccc
Q 039116 57 DLLKLQRLTLQGNKFL 72 (248)
Q Consensus 57 ~l~~L~~L~l~~n~l~ 72 (248)
.++.|+.|++++|+++
T Consensus 62 ~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 62 GLPRLKTLDLSNNRIS 77 (175)
T ss_dssp --TT--EEE--SS---
T ss_pred ChhhhhhcccCCCCCC
Confidence 3344444444444443
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.8e-10 Score=86.20 Aligned_cols=127 Identities=29% Similarity=0.315 Sum_probs=51.8
Q ss_pred hhcCcCCcEEEcCCCcCCCCCChhhc-CCccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccc-cCCCC
Q 039116 31 LRNLVNLELLHLGDNQFKGQIPGTIG-DLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSL-GKCQN 108 (248)
Q Consensus 31 ~~~l~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~ 108 (248)
+.+...++.|++.+|.|+.+ . .+. .+.+|+.|++++|.+... +.+..++.|++|++++|.++. +...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccccc-c-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 34455689999999999954 2 344 578999999999999854 467889999999999999996 44444 46899
Q ss_pred CcEEEcccCcCcc-ccchhhhhccccccEEEcccCcCCCCCCc----CccCCCCccEEEec
Q 039116 109 IALLDLSNNNLSG-TIPTEVIRLSSLSIYLDLSQNQLNGPFPS----NFGVLKNLGVIDIS 164 (248)
Q Consensus 109 L~~L~l~~n~i~~-~~~~~~~~~~~ll~~L~l~~n~i~~~~~~----~~~~~~~L~~L~l~ 164 (248)
|+.|++.+|++.. ..-..+..++.| +.|++.+|+++.. +. .+..+|+|+.||-.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L-~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKL-RVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT---EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCc-ceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 9999999999973 122456788999 9999999999843 32 34568999988754
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.00 E-value=3.3e-10 Score=70.07 Aligned_cols=59 Identities=32% Similarity=0.478 Sum_probs=38.5
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNK 70 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~ 70 (248)
+|++|++++|.+....+..|.++++|++|++++|.++...+++|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 56667777666664444566666666666666666665555666666666666666664
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.96 E-value=8.1e-10 Score=68.29 Aligned_cols=61 Identities=31% Similarity=0.447 Sum_probs=42.4
Q ss_pred cCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcccccc
Q 039116 35 VNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENML 95 (248)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 95 (248)
|+|++|++++|+++.+.++.|.++++|++|++++|.+....++.|..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777766556677777777777777777666666677777777777776653
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.6e-10 Score=95.51 Aligned_cols=181 Identities=25% Similarity=0.248 Sum_probs=129.4
Q ss_pred hhcccCCccEEEccccccccCc--hhhhhcCcCCcEEEcCCCcCCCCC-ChhhcCCccccEEEecCcccccc-CCcccCC
Q 039116 6 VGSLSTQLKILSVENNQFFGNI--PSGLRNLVNLELLHLGDNQFKGQI-PGTIGDLLKLQRLTLQGNKFLGE-IPPSIGN 81 (248)
Q Consensus 6 ~~~~~~~L~~L~l~~~~i~~~~--p~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~ 81 (248)
...++ +++.|+++.|-+..+. -.-..++|+|+.|.++.|.+.-.. ...-..+++|+.|.++.|+++.. ....+..
T Consensus 142 ~k~~~-~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 142 SKILP-NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhCC-cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 34566 9999999999887543 344578999999999999887211 11122478899999999998722 1223457
Q ss_pred CCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccc--hhhhhccccccEEEcccCcCCCCC-CcC-----cc
Q 039116 82 LTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIP--TEVIRLSSLSIYLDLSQNQLNGPF-PSN-----FG 153 (248)
Q Consensus 82 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~~~~ll~~L~l~~n~i~~~~-~~~-----~~ 153 (248)
+|+|..|++..|.....-.....-++.|+.|++.+|.+. .++ ...+.++.+ ..|+++.+.+++.. |+. ..
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L-~~Lnls~tgi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGL-NQLNLSSTGIASIAEPDVESLDKTH 298 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccch-hhhhccccCcchhcCCCccchhhhc
Confidence 899999999999532222233345678999999999887 444 446788999 88999999988643 333 34
Q ss_pred CCCCccEEEecCCcCCCc-------cCCCCceEEccCCcceee
Q 039116 154 VLKNLGVIDISENKLSDD-------IPNSLENLNLSFNHFEGE 189 (248)
Q Consensus 154 ~~~~L~~L~l~~n~i~~~-------~p~~L~~L~l~~n~l~~~ 189 (248)
.+++|+.|++..|+|.+. .-+++..|.+..|.++..
T Consensus 299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 689999999999999631 113477777777777643
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=1.3e-10 Score=92.09 Aligned_cols=126 Identities=31% Similarity=0.364 Sum_probs=62.5
Q ss_pred CcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCCcEEEccc
Q 039116 37 LELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSN 116 (248)
Q Consensus 37 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 116 (248)
|+++|+++|.|+ .+.++..-+|+++.|++++|++... ..++.+++|+.||+++|.++. +..|=.++.++++|.+.+
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhh
Confidence 455555555555 3344444455555555555555422 225555555555555555543 333333445555555555
Q ss_pred CcCccccchhhhhccccccEEEcccCcCCCCC-CcCccCCCCccEEEecCCcCC
Q 039116 117 NNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPF-PSNFGVLKNLGVIDISENKLS 169 (248)
Q Consensus 117 n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~i~ 169 (248)
|.+. . ...++.+.++ ..||+++|+|.... ...++++|-|+++.+.+|.+.
T Consensus 362 N~iE-~-LSGL~KLYSL-vnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 362 NKIE-T-LSGLRKLYSL-VNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhHh-h-hhhhHhhhhh-eeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 5543 1 2234444555 55555555554211 233445555555555555554
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.92 E-value=2.3e-10 Score=92.05 Aligned_cols=176 Identities=19% Similarity=0.221 Sum_probs=104.5
Q ss_pred hcCcCCcEEEcCCCcCCCCCChhh----cCCccccEEEecCccccccCC-------------cccCCCCCccEEEccccc
Q 039116 32 RNLVNLELLHLGDNQFKGQIPGTI----GDLLKLQRLTLQGNKFLGEIP-------------PSIGNLTLLTTLNFGENM 94 (248)
Q Consensus 32 ~~l~~L~~L~l~~~~i~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~-------------~~l~~l~~L~~L~l~~n~ 94 (248)
.+.++|+.+++++|.+....+..| ..+..|++|++.+|.+...-- +-..+-+.|+.+...+|+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 455667777777776664444333 234567777777766542111 112233567777777776
Q ss_pred ccccC----CccccCCCCCcEEEcccCcCcc----ccchhhhhccccccEEEcccCcCCCC----CCcCccCCCCccEEE
Q 039116 95 LEESI----PSSLGKCQNIALLDLSNNNLSG----TIPTEVIRLSSLSIYLDLSQNQLNGP----FPSNFGVLKNLGVID 162 (248)
Q Consensus 95 ~~~~~----~~~l~~l~~L~~L~l~~n~i~~----~~~~~~~~~~~ll~~L~l~~n~i~~~----~~~~~~~~~~L~~L~ 162 (248)
+.... ...+...+.|+.+.+..|.|.. .+...+..++.+ +.||++.|.++.. +...++.+++|+.++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~L-evLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHL-EVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcc-eeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 65322 2344556677777777777642 122334566777 7788888877642 234556677788888
Q ss_pred ecCCcCCCc-----------cCCCCceEEccCCcceeecc-----CCcccCCCceeeecCCc
Q 039116 163 ISENKLSDD-----------IPNSLENLNLSFNHFEGEVP-----IKGVFNNSSAISLDGND 208 (248)
Q Consensus 163 l~~n~i~~~-----------~p~~L~~L~l~~n~l~~~~~-----~~~~~~~l~~l~l~~n~ 208 (248)
+++|.+... .-+.|+.+.+.+|.++..-. ....-+.|.+|++++|.
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 888877642 12457778888887774311 22336677777777774
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.85 E-value=3.6e-10 Score=90.95 Aligned_cols=179 Identities=21% Similarity=0.287 Sum_probs=134.2
Q ss_pred hhcccCCccEEEccccccccCchhhh----hcCcCCcEEEcCCCcCCCCCChh-------------hcCCccccEEEecC
Q 039116 6 VGSLSTQLKILSVENNQFFGNIPSGL----RNLVNLELLHLGDNQFKGQIPGT-------------IGDLLKLQRLTLQG 68 (248)
Q Consensus 6 ~~~~~~~L~~L~l~~~~i~~~~p~~~----~~l~~L~~L~l~~~~i~~~~~~~-------------~~~l~~L~~L~l~~ 68 (248)
+...+ +|++|+||+|-+...-+..| ..+..|++|.+.+|.+...--.. ...-++|+.+...+
T Consensus 88 L~~~~-~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 88 LLGCP-KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HhcCC-ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 33445 89999999999876666555 45678999999999888322111 22346899999999
Q ss_pred cccccc----CCcccCCCCCccEEEcccccccccC----CccccCCCCCcEEEcccCcCcc----ccchhhhhccccccE
Q 039116 69 NKFLGE----IPPSIGNLTLLTTLNFGENMLEESI----PSSLGKCQNIALLDLSNNNLSG----TIPTEVIRLSSLSIY 136 (248)
Q Consensus 69 n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~i~~----~~~~~~~~~~~ll~~ 136 (248)
|++... +...++.++.|+.+.+.+|.+.... ...+..+++|+.|++++|.++. .+...+..++.+ +.
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L-~E 245 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL-RE 245 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh-ee
Confidence 998633 2345778899999999999986432 3456889999999999998873 233456678888 89
Q ss_pred EEcccCcCCCCCCcCc-----cCCCCccEEEecCCcCCCcc----------CCCCceEEccCCcc
Q 039116 137 LDLSQNQLNGPFPSNF-----GVLKNLGVIDISENKLSDDI----------PNSLENLNLSFNHF 186 (248)
Q Consensus 137 L~l~~n~i~~~~~~~~-----~~~~~L~~L~l~~n~i~~~~----------p~~L~~L~l~~n~l 186 (248)
++++.|.+......++ ...|+|+.+.+.+|.|+..- -+.|..|.+++|.+
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 9999999875433322 24799999999999997421 24599999999999
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=9.1e-10 Score=94.47 Aligned_cols=166 Identities=25% Similarity=0.295 Sum_probs=75.2
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+++.|++.+|.|.. +...+..+++|++|++++|.|+.+.+ +..++.|+.|++.+|.+... ..+..++.|+.++++
T Consensus 96 ~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 96 SLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLS 170 (414)
T ss_pred ceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCC
Confidence 55555555555542 21214445555555555555553222 23344455555555555422 233335555555555
Q ss_pred cccccccCC-ccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCC--CccEEEecCCcC
Q 039116 92 ENMLEESIP-SSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLK--NLGVIDISENKL 168 (248)
Q Consensus 92 ~n~~~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~--~L~~L~l~~n~i 168 (248)
+|.+...-. . ...+.+++.+.+.+|.+.... .+.....+ ..+++..|.++...+. .... +|+.+++++|++
T Consensus 171 ~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l-~~~~l~~n~i~~~~~l--~~~~~~~L~~l~l~~n~i 244 (414)
T KOG0531|consen 171 YNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKL-VLLSLLDNKISKLEGL--NELVMLHLRELYLSGNRI 244 (414)
T ss_pred cchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHH-HHhhcccccceeccCc--ccchhHHHHHHhcccCcc
Confidence 555543211 1 234445555555555543111 12222222 3335555555422111 1122 266667777766
Q ss_pred CCc---c--CCCCceEEccCCccee
Q 039116 169 SDD---I--PNSLENLNLSFNHFEG 188 (248)
Q Consensus 169 ~~~---~--p~~L~~L~l~~n~l~~ 188 (248)
... + ...+..+++.+|++..
T Consensus 245 ~~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 245 SRSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred ccccccccccccccccchhhccccc
Confidence 532 1 1236666666666653
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.72 E-value=1.2e-08 Score=94.11 Aligned_cols=164 Identities=25% Similarity=0.359 Sum_probs=98.2
Q ss_pred chhhh-cccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCC
Q 039116 3 PEAVG-SLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGN 81 (248)
Q Consensus 3 p~~~~-~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 81 (248)
+..|+ .++ .|+.||+++|.-.+.+|+.++++-+|+.|+++++.+. ..|..+.++++|.+|++..+.-....+.....
T Consensus 563 s~~ff~~m~-~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~ 640 (889)
T KOG4658|consen 563 SGEFFRSLP-LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLE 640 (889)
T ss_pred CHHHHhhCc-ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhh
Confidence 44433 455 8888888877766678888888888888888888888 77888888888888888877654455555666
Q ss_pred CCCccEEEccccccc--ccCCccccCCCCCcEEEcccCcCccccc--hhhhhccccccEEEcccCcCCCCCCcCccCCCC
Q 039116 82 LTLLTTLNFGENMLE--ESIPSSLGKCQNIALLDLSNNNLSGTIP--TEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKN 157 (248)
Q Consensus 82 l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~ 157 (248)
+++|++|.+...... ...-..+..+.+|+.+........ .+- .....+....+.+.+.++... ..+..+..+.+
T Consensus 641 L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~-~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~ 718 (889)
T KOG4658|consen 641 LQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL-LLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGN 718 (889)
T ss_pred cccccEEEeeccccccchhhHHhhhcccchhhheeecchhH-hHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccC
Confidence 888888887665422 111222344444444444222110 000 011111111122333232222 34555667788
Q ss_pred ccEEEecCCcCCC
Q 039116 158 LGVIDISENKLSD 170 (248)
Q Consensus 158 L~~L~l~~n~i~~ 170 (248)
|+.|.+.++.+.+
T Consensus 719 L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 719 LEELSILDCGISE 731 (889)
T ss_pred cceEEEEcCCCch
Confidence 8888888888764
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=2.2e-09 Score=92.08 Aligned_cols=186 Identities=30% Similarity=0.337 Sum_probs=134.7
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
.++.+.+..+.+.. .-..+..+.+|+.+++.+|+|..+.. .+..+++|++|++++|.++.. ..+..++.|+.|++.
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhheec
Confidence 56677788887763 33446778899999999999984433 256788999999999998855 456677779999999
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchh-hhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCC
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTE-VIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSD 170 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 170 (248)
+|.++. ...+..+..|+.+++.+|.+...-+ . ...+..+ +.+++.+|.+... ..+.....+..+++..|.++.
T Consensus 149 ~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l-~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 149 GNLISD--ISGLESLKSLKLLDLSYNRIVDIEN-DELSELISL-EELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred cCcchh--ccCCccchhhhcccCCcchhhhhhh-hhhhhccch-HHHhccCCchhcc--cchHHHHHHHHhhccccccee
Confidence 999885 3455568889999999999873332 1 4566777 7888999988732 333445556666888888875
Q ss_pred ccCCC------CceEEccCCcceeeccCCcccCCCceeeecCC
Q 039116 171 DIPNS------LENLNLSFNHFEGEVPIKGVFNNSSAISLDGN 207 (248)
Q Consensus 171 ~~p~~------L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n 207 (248)
.-+.. ++.+++.+|++.........+..+..+++.+|
T Consensus 223 ~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 223 LEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred ccCcccchhHHHHHHhcccCccccccccccccccccccchhhc
Confidence 33211 78999999988855334566667777777766
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.45 E-value=2.2e-09 Score=94.14 Aligned_cols=123 Identities=28% Similarity=0.310 Sum_probs=70.4
Q ss_pred ccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEec
Q 039116 85 LTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDIS 164 (248)
Q Consensus 85 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~ 164 (248)
|...+.+.|.+.. ...++.-++.++.|+++.|++++ .. .+..++.| .+||++.|.+. .+|..-..-.+|..|.+.
T Consensus 166 L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~L-khLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKL-KHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccc-cccccccchhc-cccccchhhhhheeeeec
Confidence 4444445555442 33445555566666666666652 21 45555666 66666666665 334322222336666666
Q ss_pred CCcCCCcc----CCCCceEEccCCcceeecc--CCcccCCCceeeecCCcccee
Q 039116 165 ENKLSDDI----PNSLENLNLSFNHFEGEVP--IKGVFNNSSAISLDGNDNLCG 212 (248)
Q Consensus 165 ~n~i~~~~----p~~L~~L~l~~n~l~~~~~--~~~~~~~l~~l~l~~n~~~~~ 212 (248)
+|.+++-. -++|+.||+++|-+.+... ..+.+..|+.|++.|||-.|.
T Consensus 241 nN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 241 NNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred ccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 66665311 1357777777777765543 467777788888888887664
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=7.3e-07 Score=71.02 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=14.8
Q ss_pred CceEEccCCcceeecc--CCcccCCCceeeecCCc
Q 039116 176 LENLNLSFNHFEGEVP--IKGVFNNSSAISLDGND 208 (248)
Q Consensus 176 L~~L~l~~n~l~~~~~--~~~~~~~l~~l~l~~n~ 208 (248)
+.-|.++.+++.+... ....|+.+..+.+.+||
T Consensus 226 ~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 226 LSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred chhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence 3344444444443322 33444555555555554
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.23 E-value=9.9e-07 Score=81.76 Aligned_cols=62 Identities=32% Similarity=0.542 Sum_probs=26.4
Q ss_pred hcCCccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCCcEEEcccC
Q 039116 55 IGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNN 117 (248)
Q Consensus 55 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 117 (248)
|..+|.|..||+++|.-.+.+|+.++.+-+|+.|+++++.+. .+|..+.++..|.+|++..+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccc
Confidence 333444444444443333344444444444444444444444 24444444444444444433
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=4.5e-08 Score=86.13 Aligned_cols=126 Identities=31% Similarity=0.322 Sum_probs=95.9
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcc-cCCCCCccEEEc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPS-IGNLTLLTTLNF 90 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l 90 (248)
.|...+.++|.+. .+..++.-++.++.|++++|+++. + +.+..+++|++||+++|.++. .|.. ...+ .|+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccchhcc-ccccchhhh-hheeeee
Confidence 5666777888877 566778888999999999999984 3 378889999999999999883 3332 2233 3999999
Q ss_pred ccccccccCCccccCCCCCcEEEcccCcCcccc-chhhhhccccccEEEcccCcCC
Q 039116 91 GENMLEESIPSSLGKCQNIALLDLSNNNLSGTI-PTEVIRLSSLSIYLDLSQNQLN 145 (248)
Q Consensus 91 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~-~~~~~~~~~ll~~L~l~~n~i~ 145 (248)
.+|.++. -..+.++.+|+.|++++|-+.+.- ...+..+..| ..|++.||.+-
T Consensus 240 rnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L-~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSL-IVLWLEGNPLC 292 (1096)
T ss_pred cccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHH-HHHhhcCCccc
Confidence 9998874 456788899999999999776321 1335566777 88999999875
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3.8e-08 Score=78.18 Aligned_cols=155 Identities=21% Similarity=0.208 Sum_probs=92.8
Q ss_pred CccEEEcccccccc-CchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCcc-ccccCC-cccCCCCCccEE
Q 039116 12 QLKILSVENNQFFG-NIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNK-FLGEIP-PSIGNLTLLTTL 88 (248)
Q Consensus 12 ~L~~L~l~~~~i~~-~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~L 88 (248)
.|+.+||++..|+. .+...+..+.+|+.|.+.++++.+.....++...+|+.++++.+. ++.... -.+.+++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 57788888877763 223344667778888888888877666677777788888888753 331111 134567788888
Q ss_pred EcccccccccCCcc-ccC-CCCCcEEEcccCcCc--c-ccchhhhhccccccEEEcccCcC-CCCCCcCccCCCCccEEE
Q 039116 89 NFGENMLEESIPSS-LGK-CQNIALLDLSNNNLS--G-TIPTEVIRLSSLSIYLDLSQNQL-NGPFPSNFGVLKNLGVID 162 (248)
Q Consensus 89 ~l~~n~~~~~~~~~-l~~-l~~L~~L~l~~n~i~--~-~~~~~~~~~~~ll~~L~l~~n~i-~~~~~~~~~~~~~L~~L~ 162 (248)
++++|......... +.. -++|..|+++++.-. . .+......++++ .+||++.|.. +...-..+.+++.|++|+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l-~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNL-VHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCce-eeeccccccccCchHHHHHHhcchheeee
Confidence 88888765322111 111 245777777665321 1 112223456677 7777776633 322223445677777777
Q ss_pred ecCCc
Q 039116 163 ISENK 167 (248)
Q Consensus 163 l~~n~ 167 (248)
++.|.
T Consensus 345 lsRCY 349 (419)
T KOG2120|consen 345 LSRCY 349 (419)
T ss_pred hhhhc
Confidence 77765
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=8.3e-08 Score=67.83 Aligned_cols=103 Identities=24% Similarity=0.379 Sum_probs=49.7
Q ss_pred ccEEEccccccccCchhh---hhcCcCCcEEEcCCCcCCCCCChhhcC-CccccEEEecCccccccCCcccCCCCCccEE
Q 039116 13 LKILSVENNQFFGNIPSG---LRNLVNLELLHLGDNQFKGQIPGTIGD-LLKLQRLTLQGNKFLGEIPPSIGNLTLLTTL 88 (248)
Q Consensus 13 L~~L~l~~~~i~~~~p~~---~~~l~~L~~L~l~~~~i~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 88 (248)
+..++|+.|++- .+++. +.+...|+..++++|.+. .+|..|.. .+.++.+++.+|.++ ..|..+..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 334555555543 22222 233344555556666555 34444432 235555555555555 444445555555555
Q ss_pred EcccccccccCCccccCCCCCcEEEcccCcC
Q 039116 89 NFGENMLEESIPSSLGKCQNIALLDLSNNNL 119 (248)
Q Consensus 89 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i 119 (248)
++..|.+.. .|.-+..+.++..|+..+|.+
T Consensus 106 Nl~~N~l~~-~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 106 NLRFNPLNA-EPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred ccccCcccc-chHHHHHHHhHHHhcCCCCcc
Confidence 555555543 343333444445555544444
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.12 E-value=5.3e-06 Score=62.55 Aligned_cols=103 Identities=21% Similarity=0.184 Sum_probs=55.4
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCC-cccCCCCCccEEEc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIP-PSIGNLTLLTTLNF 90 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l 90 (248)
+...+||++|.+.. -..|.+++.|.+|.+..|.|+.+.|.--.-+|+|..|.+.+|.+..... ..+..+|+|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 45556666666541 1345556666666666666665555433345566666666666552211 23445666666666
Q ss_pred cccccccc---CCccccCCCCCcEEEccc
Q 039116 91 GENMLEES---IPSSLGKCQNIALLDLSN 116 (248)
Q Consensus 91 ~~n~~~~~---~~~~l~~l~~L~~L~l~~ 116 (248)
-+|.++.. -...+..+++|+.|++..
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 66655421 112345556666666654
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.12 E-value=2e-07 Score=65.94 Aligned_cols=139 Identities=22% Similarity=0.269 Sum_probs=100.9
Q ss_pred CCcEEEcCCCcCCCCCChhhcC---CccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCCcEE
Q 039116 36 NLELLHLGDNQFKGQIPGTIGD---LLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALL 112 (248)
Q Consensus 36 ~L~~L~l~~~~i~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 112 (248)
.+..++++.|++. ..+++... ...|..+++++|.+....+.....++.++++++.+|.++. +|..+..++.|+.+
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhc
Confidence 3566788888877 44555444 3457778999999884444444567799999999999986 77779999999999
Q ss_pred EcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCccCCCCceE
Q 039116 113 DLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPNSLENL 179 (248)
Q Consensus 113 ~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~L~~L 179 (248)
+++.|.+. ..|..+..+.++ ..|+..+|.+.. ++-.+-.........+.++.+.+..+..++.+
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l-~~Lds~~na~~e-id~dl~~s~~~al~~lgnepl~~~~~~klqa~ 169 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKL-DMLDSPENARAE-IDVDLFYSSLPALIKLGNEPLGDETKKKLQAL 169 (177)
T ss_pred ccccCccc-cchHHHHHHHhH-HHhcCCCCcccc-CcHHHhccccHHHHHhcCCcccccCccccccc
Confidence 99999998 788888778888 889998888873 33333233334445556777776666655544
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=3.9e-06 Score=47.81 Aligned_cols=36 Identities=42% Similarity=0.625 Sum_probs=24.8
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCC
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFK 48 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~ 48 (248)
+|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 6777777777777 55656777777777777777776
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=6.2e-07 Score=71.42 Aligned_cols=183 Identities=18% Similarity=0.135 Sum_probs=106.9
Q ss_pred hhcccCCccEEEccccccccC--chhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCcccccc-CCcccCCC
Q 039116 6 VGSLSTQLKILSVENNQFFGN--IPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGE-IPPSIGNL 82 (248)
Q Consensus 6 ~~~~~~~L~~L~l~~~~i~~~--~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l 82 (248)
|+...++++++||.+|.|..+ +...+.++|.|+.|.++.|.+...+........+|+.|-+.+..+... ....+..+
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 444445777778877777632 334456777788888887777633222213556777777777766422 22345567
Q ss_pred CCccEEEcccccccccCC--ccccC-CCCCcEEEcccCcCcc--ccchhhhhccccccEEEcccCcCCCC-CCcCccCCC
Q 039116 83 TLLTTLNFGENMLEESIP--SSLGK-CQNIALLDLSNNNLSG--TIPTEVIRLSSLSIYLDLSQNQLNGP-FPSNFGVLK 156 (248)
Q Consensus 83 ~~L~~L~l~~n~~~~~~~--~~l~~-l~~L~~L~l~~n~i~~--~~~~~~~~~~~ll~~L~l~~n~i~~~-~~~~~~~~~ 156 (248)
|.++++.++.|....... .-... .+.+.+++..+|.... ........++++ ..+.+..|.+... ....+..+|
T Consensus 146 P~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv-~sv~v~e~PlK~~s~ek~se~~p 224 (418)
T KOG2982|consen 146 PKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV-NSVFVCEGPLKTESSEKGSEPFP 224 (418)
T ss_pred hhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc-hheeeecCcccchhhcccCCCCC
Confidence 777777777774432111 11111 2355666666554320 111122335666 7777777877543 234455678
Q ss_pred CccEEEecCCcCCCc-------cCCCCceEEccCCcceee
Q 039116 157 NLGVIDISENKLSDD-------IPNSLENLNLSFNHFEGE 189 (248)
Q Consensus 157 ~L~~L~l~~n~i~~~-------~p~~L~~L~l~~n~l~~~ 189 (248)
.+..|+|+.|+|..- -.+.+..|.+.++.+...
T Consensus 225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred cchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 888999999998641 123488888888877543
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.04 E-value=1.6e-06 Score=68.29 Aligned_cols=199 Identities=18% Similarity=0.199 Sum_probs=127.6
Q ss_pred hhcccCCccEEEcccccc---ccCch-------hhhhcCcCCcEEEcCCCcCCCCCChhh----cCCccccEEEecCccc
Q 039116 6 VGSLSTQLKILSVENNQF---FGNIP-------SGLRNLVNLELLHLGDNQFKGQIPGTI----GDLLKLQRLTLQGNKF 71 (248)
Q Consensus 6 ~~~~~~~L~~L~l~~~~i---~~~~p-------~~~~~l~~L~~L~l~~~~i~~~~~~~~----~~l~~L~~L~l~~n~l 71 (248)
+++-. +|+..++++--. ...++ .++.++|.|+.+++++|.+....|+.+ +.-..|++|.+++|++
T Consensus 54 ia~~~-~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 54 IANVR-NLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred Hhhhc-ceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 44444 777777765321 11223 345678899999999998886666443 3446789999999876
Q ss_pred cccCCcc-------------cCCCCCccEEEcccccccccCCc-----cccCCCCCcEEEcccCcCccccc-----hhhh
Q 039116 72 LGEIPPS-------------IGNLTLLTTLNFGENMLEESIPS-----SLGKCQNIALLDLSNNNLSGTIP-----TEVI 128 (248)
Q Consensus 72 ~~~~~~~-------------l~~l~~L~~L~l~~n~~~~~~~~-----~l~~l~~L~~L~l~~n~i~~~~~-----~~~~ 128 (248)
..+.-.- ...-|.|+.+.+.+|++.. .+. .+..-..|+.+.+..|.|...-. ..+.
T Consensus 133 Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~ 211 (388)
T COG5238 133 GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLF 211 (388)
T ss_pred CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHH
Confidence 5322111 2244789999999998864 222 23334578889999998862211 1234
Q ss_pred hccccccEEEcccCcCCCC----CCcCccCCCCccEEEecCCcCCCcc------------CCCCceEEccCCcceeecc-
Q 039116 129 RLSSLSIYLDLSQNQLNGP----FPSNFGVLKNLGVIDISENKLSDDI------------PNSLENLNLSFNHFEGEVP- 191 (248)
Q Consensus 129 ~~~~ll~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~i~~~~------------p~~L~~L~l~~n~l~~~~~- 191 (248)
.+.++ +.||++.|.++.. +..+++.|+.|+.|.+..|.++... .+.|..|...+|...+.+-
T Consensus 212 y~~~L-evLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~ 290 (388)
T COG5238 212 YSHSL-EVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIIL 290 (388)
T ss_pred HhCcc-eeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceee
Confidence 55777 8999999988743 2345667888999999999887422 2447778888887665322
Q ss_pred -------CCcccCCCceeeecCC
Q 039116 192 -------IKGVFNNSSAISLDGN 207 (248)
Q Consensus 192 -------~~~~~~~l~~l~l~~n 207 (248)
.-..+|-|..|.+.||
T Consensus 291 ~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 291 DISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred eechhhhhhcccHHHHHHHHccC
Confidence 1233455666666666
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.96 E-value=1.5e-05 Score=60.16 Aligned_cols=105 Identities=20% Similarity=0.192 Sum_probs=54.6
Q ss_pred ccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccc--hhhhhccccccE
Q 039116 59 LKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIP--TEVIRLSSLSIY 136 (248)
Q Consensus 59 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~~~~ll~~ 136 (248)
.+...+++++|.+... ..|..++.|.+|.++.|+++...|..-..+++|..|.+.+|.+. .+- ..+..++.| ++
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L-~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKL-EY 117 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcc-ce
Confidence 3555666666665422 34555666666666666666544433344455666666666654 111 123445555 56
Q ss_pred EEcccCcCCCCC---CcCccCCCCccEEEecCCc
Q 039116 137 LDLSQNQLNGPF---PSNFGVLKNLGVIDISENK 167 (248)
Q Consensus 137 L~l~~n~i~~~~---~~~~~~~~~L~~L~l~~n~ 167 (248)
|.+-+|.++..- .-.+..+|+|++||+..-.
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 666666554210 1123445666666665444
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.95 E-value=5.5e-06 Score=65.34 Aligned_cols=198 Identities=18% Similarity=0.187 Sum_probs=132.0
Q ss_pred ccCCccEEEccccccccCchh----hhhcCcCCcEEEcCCCcCC---CCCC-------hhhcCCccccEEEecCcccccc
Q 039116 9 LSTQLKILSVENNQFFGNIPS----GLRNLVNLELLHLGDNQFK---GQIP-------GTIGDLLKLQRLTLQGNKFLGE 74 (248)
Q Consensus 9 ~~~~L~~L~l~~~~i~~~~p~----~~~~l~~L~~L~l~~~~i~---~~~~-------~~~~~l~~L~~L~l~~n~l~~~ 74 (248)
+. .+..++|++|.|...... .+.+-.+|+...+++-..+ ..++ .++.++|+|+..+++.|.+...
T Consensus 29 ~d-~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MD-ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hc-ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 44 788999999998754444 4455677888887764333 1222 4556889999999999987755
Q ss_pred CCc----ccCCCCCccEEEcccccccccCC----c---------cccCCCCCcEEEcccCcCccccchh-----hhhccc
Q 039116 75 IPP----SIGNLTLLTTLNFGENMLEESIP----S---------SLGKCQNIALLDLSNNNLSGTIPTE-----VIRLSS 132 (248)
Q Consensus 75 ~~~----~l~~l~~L~~L~l~~n~~~~~~~----~---------~l~~l~~L~~L~l~~n~i~~~~~~~-----~~~~~~ 132 (248)
.|. .+++...|..|.+++|++...-- . ....-+.|+.+.+..|++- ..+.. +..-..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcC
Confidence 554 35677889999999998753211 1 1234578999999999886 33322 222245
Q ss_pred cccEEEcccCcCCCCCCc-----CccCCCCccEEEecCCcCCCc--------cCCC--CceEEccCCcceee--cc----
Q 039116 133 LSIYLDLSQNQLNGPFPS-----NFGVLKNLGVIDISENKLSDD--------IPNS--LENLNLSFNHFEGE--VP---- 191 (248)
Q Consensus 133 ll~~L~l~~n~i~~~~~~-----~~~~~~~L~~L~l~~n~i~~~--------~p~~--L~~L~l~~n~l~~~--~~---- 191 (248)
+ ..+-+..|.|....-. .+..+.+|+.|++..|-++-. .+.| |++|.+.+|-+... ..
T Consensus 187 l-k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 187 L-KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred c-eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 5 7888888887632111 224578899999999998732 2322 78999988877632 11
Q ss_pred -CCcccCCCceeeecCCcc
Q 039116 192 -IKGVFNNSSAISLDGNDN 209 (248)
Q Consensus 192 -~~~~~~~l~~l~l~~n~~ 209 (248)
.-..+|+|..|.+.+|..
T Consensus 266 f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred hhhhcCCCccccccchhhh
Confidence 223367888888888853
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=0.00014 Score=61.62 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=26.3
Q ss_pred cCcCCcEEEcCCCcCCCCCChhhcCCc-cccEEEecCccccccCCcccCCCCCccEEEcccc
Q 039116 33 NLVNLELLHLGDNQFKGQIPGTIGDLL-KLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGEN 93 (248)
Q Consensus 33 ~l~~L~~L~l~~~~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 93 (248)
.+.+++.|++++|.++ .+| .+| +|+.|.++++.-...+|+.+ .++|+.|++.+|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 3455666666666555 334 122 46666665533222334332 135666666655
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.3e-05 Score=45.63 Aligned_cols=36 Identities=36% Similarity=0.569 Sum_probs=21.1
Q ss_pred CCcEEEcCCCcCCCCCChhhcCCccccEEEecCcccc
Q 039116 36 NLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFL 72 (248)
Q Consensus 36 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~ 72 (248)
+|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666666666666 34445666666666666666655
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=0.00024 Score=60.19 Aligned_cols=146 Identities=17% Similarity=0.265 Sum_probs=81.9
Q ss_pred CccEEEccccccccCchhhhhcCc-CCcEEEcCCCcCCCCCChhhcCCccccEEEecCc-cccccCCcccCCCCCccEEE
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLV-NLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGN-KFLGEIPPSIGNLTLLTTLN 89 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~ 89 (248)
+++.|++++|.++ .+| .+| +|+.|.+++|.--...|+.+ .++|+.|.+++| .+. .+|. .|+.|+
T Consensus 53 ~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~ 118 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLE 118 (426)
T ss_pred CCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceEE
Confidence 7889999988777 555 233 58899998754433566544 247888998887 443 3343 466666
Q ss_pred cccccccccCCccccCC-CCCcEEEcccCcCc--cccchhhhhc-cccccEEEcccCcCCCCCCcCccCCCCccEEEecC
Q 039116 90 FGENMLEESIPSSLGKC-QNIALLDLSNNNLS--GTIPTEVIRL-SSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISE 165 (248)
Q Consensus 90 l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~i~--~~~~~~~~~~-~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 165 (248)
+..+.... +..+ ++|+.|.+.+++.. ...+ ..+ .+| ++|++++|... ..|..+ ..+|+.|.++.
T Consensus 119 L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSL-k~L~Is~c~~i-~LP~~L--P~SLk~L~ls~ 186 (426)
T PRK15386 119 IKGSATDS-----IKNVPNGLTSLSINSYNPENQARID---NLISPSL-KTLSLTGCSNI-ILPEKL--PESLQSITLHI 186 (426)
T ss_pred eCCCCCcc-----cccCcchHhheeccccccccccccc---cccCCcc-cEEEecCCCcc-cCcccc--cccCcEEEecc
Confidence 65544331 2222 24556666432211 0111 112 344 77888777655 334332 25677777776
Q ss_pred CcC------CCccCCCCceEEccCC
Q 039116 166 NKL------SDDIPNSLENLNLSFN 184 (248)
Q Consensus 166 n~i------~~~~p~~L~~L~l~~n 184 (248)
+.. ...+|+++ .|++.++
T Consensus 187 n~~~sLeI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 187 EQKTTWNISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred cccccccCccccccccc-Eechhhh
Confidence 531 12455566 6666554
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=2.6e-05 Score=70.80 Aligned_cols=110 Identities=20% Similarity=0.309 Sum_probs=53.8
Q ss_pred CccccEEEecCcccccc-CCcccCCCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCcc-ccchhhhhcccccc
Q 039116 58 LLKLQRLTLQGNKFLGE-IPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSG-TIPTEVIRLSSLSI 135 (248)
Q Consensus 58 l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~ll~ 135 (248)
+|.|+.|.+.+-.+... ......++|+|..||+++++++.. .+++.+++|+.|.+++=.+.. ..-..++.+++| +
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L-~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL-R 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCC-C
Confidence 45555555555443211 112233455666666666655532 445555566665555433331 122344555666 5
Q ss_pred EEEcccCcCCCCC------CcCccCCCCccEEEecCCcCCC
Q 039116 136 YLDLSQNQLNGPF------PSNFGVLKNLGVIDISENKLSD 170 (248)
Q Consensus 136 ~L~l~~n~i~~~~------~~~~~~~~~L~~L~l~~n~i~~ 170 (248)
.||+|........ -.....+|+|+.||.+++.+.+
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 6666554433110 0111236677777777766654
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=4.7e-05 Score=69.10 Aligned_cols=127 Identities=26% Similarity=0.358 Sum_probs=74.4
Q ss_pred ccccEEEecCcccc-ccCCcccC-CCCCccEEEccccccccc-CCccccCCCCCcEEEcccCcCccccchhhhhcccccc
Q 039116 59 LKLQRLTLQGNKFL-GEIPPSIG-NLTLLTTLNFGENMLEES-IPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSI 135 (248)
Q Consensus 59 ~~L~~L~l~~n~l~-~~~~~~l~-~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~ 135 (248)
.+|++|++++...- ...+..++ .+|+|+.|.+.+-.+... .-....++++|..||+++++++ .+ ..++.+++| +
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknL-q 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNL-Q 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccH-H
Confidence 46777777765432 22223333 367777777776555321 1223356677777788777776 33 556777777 7
Q ss_pred EEEcccCcCCC-CCCcCccCCCCccEEEecCCcCCCcc------------CCCCceEEccCCccee
Q 039116 136 YLDLSQNQLNG-PFPSNFGVLKNLGVIDISENKLSDDI------------PNSLENLNLSFNHFEG 188 (248)
Q Consensus 136 ~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~i~~~~------------p~~L~~L~l~~n~l~~ 188 (248)
.|.+.+-.+.. ..-..+-.+++|+.||+|........ -+.|+.||.++..+..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 77777666552 11123346777777887776654211 1247777777666554
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.57 E-value=0.0003 Score=49.91 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=17.8
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEec
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQ 67 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 67 (248)
+|+.+.+.+ .+......+|.++++|+.+.+.++ +......+|.++++++.+.+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 444444442 233233333444444444444432 332333344444444444443
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.55 E-value=0.00032 Score=49.77 Aligned_cols=123 Identities=15% Similarity=0.240 Sum_probs=68.9
Q ss_pred hhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCC
Q 039116 29 SGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQN 108 (248)
Q Consensus 29 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 108 (248)
.+|.+..+|+.+.+.. .+..+...+|.++.+|+.+.+..+ +.......+..+++++.+.+.. .+.......+....+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4677888999999985 566677788999989999999885 6556666788888999999976 444445567788899
Q ss_pred CcEEEcccCcCccccchh-hhhccccccEEEcccCcCCCCCCcCccCCCCcc
Q 039116 109 IALLDLSNNNLSGTIPTE-VIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLG 159 (248)
Q Consensus 109 L~~L~l~~n~i~~~~~~~-~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~ 159 (248)
++.+.+..+ +. .++.. +... .+ +.+.+.. .+.......|..+++|+
T Consensus 83 l~~i~~~~~-~~-~i~~~~f~~~-~l-~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 83 LKNIDIPSN-IT-EIGSSSFSNC-NL-KEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ECEEEETTT--B-EEHTTTTTT--T---EEE-TT-B-SS----GGG------
T ss_pred ccccccCcc-cc-EEchhhhcCC-Cc-eEEEECC-CccEECCccccccccCC
Confidence 999999765 55 34433 4444 77 7888776 44435566777776653
No 62
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=1e-05 Score=64.70 Aligned_cols=156 Identities=22% Similarity=0.236 Sum_probs=107.1
Q ss_pred cccCCccEEEccccccccCchhhhhcCcCCcEEEcCCC-cCCCC-CChhhcCCccccEEEecCccccccCCcc-cCC-CC
Q 039116 8 SLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDN-QFKGQ-IPGTIGDLLKLQRLTLQGNKFLGEIPPS-IGN-LT 83 (248)
Q Consensus 8 ~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~-~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~-l~ 83 (248)
... +|+.|.+.++++...+...+++...|+.++++.+ .++.- ..--+..+..|..|+++.+.+....... ..+ -+
T Consensus 208 ~C~-kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 208 QCS-KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHH-hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 344 8999999999998888888999999999999986 34411 1123457888999999999875332221 112 25
Q ss_pred CccEEEccccccc--c-cCCccccCCCCCcEEEcccCc-CccccchhhhhccccccEEEcccCcCCCCCCc---CccCCC
Q 039116 84 LLTTLNFGENMLE--E-SIPSSLGKCQNIALLDLSNNN-LSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPS---NFGVLK 156 (248)
Q Consensus 84 ~L~~L~l~~n~~~--~-~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~---~~~~~~ 156 (248)
+|+.|+++++.-. . .+.-....+++|.+|++++|. ++...-..+..++.+ +++.+++|.-- .|. .+...|
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L-~~lSlsRCY~i--~p~~~~~l~s~p 363 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL-QHLSLSRCYDI--IPETLLELNSKP 363 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh-eeeehhhhcCC--ChHHeeeeccCc
Confidence 7889999886422 1 112223678899999998864 332333345677888 99999998642 333 346678
Q ss_pred CccEEEecCCc
Q 039116 157 NLGVIDISENK 167 (248)
Q Consensus 157 ~L~~L~l~~n~ 167 (248)
.|.+|+..++-
T Consensus 364 sl~yLdv~g~v 374 (419)
T KOG2120|consen 364 SLVYLDVFGCV 374 (419)
T ss_pred ceEEEEecccc
Confidence 88888887664
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=8.2e-05 Score=59.07 Aligned_cols=99 Identities=25% Similarity=0.209 Sum_probs=75.6
Q ss_pred ccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCC--cccCCCCCcc
Q 039116 9 LSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIP--PSIGNLTLLT 86 (248)
Q Consensus 9 ~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~ 86 (248)
+. ++++|++.+|++..+ +...+|+.|+.|.++-|+|+...| +..+.+|+.|++..|.|.+ +. ..+.++|+|+
T Consensus 18 l~-~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LE-NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLR 91 (388)
T ss_pred HH-HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhh
Confidence 44 678899999988732 345689999999999999995544 6678899999999999873 23 3577899999
Q ss_pred EEEcccccccccCCc-----cccCCCCCcEEE
Q 039116 87 TLNFGENMLEESIPS-----SLGKCQNIALLD 113 (248)
Q Consensus 87 ~L~l~~n~~~~~~~~-----~l~~l~~L~~L~ 113 (248)
.|.+..|.+.+.-+. -+..+++|+.|+
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999987764443 245577777775
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.44 E-value=0.0015 Score=51.39 Aligned_cols=87 Identities=25% Similarity=0.326 Sum_probs=49.9
Q ss_pred hcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCc--cccccCCcccCCCCCccEEEccccccccc-CCccccCCCC
Q 039116 32 RNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGN--KFLGEIPPSIGNLTLLTTLNFGENMLEES-IPSSLGKCQN 108 (248)
Q Consensus 32 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~ 108 (248)
..+..|+.+.+.+..++.. ..+-.+|+|+.|.++.| ++...++-....+|+|+.++++.|.++.. .-..+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3445556666655555521 12335677778888777 44433343344557888888888777620 1122345566
Q ss_pred CcEEEcccCcCc
Q 039116 109 IALLDLSNNNLS 120 (248)
Q Consensus 109 L~~L~l~~n~i~ 120 (248)
|..|++..|..+
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 777777766654
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.15 E-value=0.005 Score=48.54 Aligned_cols=103 Identities=20% Similarity=0.265 Sum_probs=63.9
Q ss_pred CCccccEEEecCccccccCCcccCCCCCccEEEcccc--cccccCCccccCCCCCcEEEcccCcCccc-cchhhhhcccc
Q 039116 57 DLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGEN--MLEESIPSSLGKCQNIALLDLSNNNLSGT-IPTEVIRLSSL 133 (248)
Q Consensus 57 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n--~~~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~~~~l 133 (248)
.+..|+.+.+.+.+++.. ..+-.+++|+.|.++.| ++.+.+.......++|+++++++|++... --..+..+.++
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 345566666666665422 34556788899999888 55555555556668899999999888620 11234456667
Q ss_pred ccEEEcccCcCCCCC---CcCccCCCCccEEE
Q 039116 134 SIYLDLSQNQLNGPF---PSNFGVLKNLGVID 162 (248)
Q Consensus 134 l~~L~l~~n~i~~~~---~~~~~~~~~L~~L~ 162 (248)
..|++.+|..+... ...|.-+++|++|+
T Consensus 119 -~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 119 -KSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred -hhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 78888888766421 11233456666554
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.88 E-value=0.0041 Score=29.48 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=13.0
Q ss_pred CccEEEccccccccCchhhhhc
Q 039116 12 QLKILSVENNQFFGNIPSGLRN 33 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~ 33 (248)
+|++|++++|.++ .+|+.|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3667777777666 55555543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=0.00086 Score=53.45 Aligned_cols=72 Identities=25% Similarity=0.169 Sum_probs=35.7
Q ss_pred cEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCccC----CCCceEEccCCcceeecc--CCcccCCCceeeecCCc
Q 039116 135 IYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIP----NSLENLNLSFNHFEGEVP--IKGVFNNSSAISLDGND 208 (248)
Q Consensus 135 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p----~~L~~L~l~~n~l~~~~~--~~~~~~~l~~l~l~~n~ 208 (248)
.+|+..|+.++++ ..-..++.|+.|.|+.|.|+.--| ..|++|+|..|.|.+... +...+|+|++|++..||
T Consensus 22 kKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 22 KKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 4455555555421 111245555555555555553322 125555555555554322 45555556666666654
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.04 E-value=0.046 Score=24.00 Aligned_cols=13 Identities=46% Similarity=0.825 Sum_probs=5.7
Q ss_pred CccEEEecCCcCC
Q 039116 157 NLGVIDISENKLS 169 (248)
Q Consensus 157 ~L~~L~l~~n~i~ 169 (248)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555666666554
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.80 E-value=0.0025 Score=49.61 Aligned_cols=82 Identities=17% Similarity=0.175 Sum_probs=57.5
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
..+.||++.|++. .+...|+.++.+..|+++.|++. ..|..+.....+.+++...|..+ ..|.+++..+.++.++..
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 6667777777765 45556666777777777777777 66777777777777777777665 567777777777777776
Q ss_pred ccccc
Q 039116 92 ENMLE 96 (248)
Q Consensus 92 ~n~~~ 96 (248)
.+.+.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 66543
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.22 E-value=0.019 Score=43.72 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=53.5
Q ss_pred CCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccC-CcccC-CCCCccEEEcccc-cccccCCccccCCCCCcEE
Q 039116 36 NLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEI-PPSIG-NLTLLTTLNFGEN-MLEESIPSSLGKCQNIALL 112 (248)
Q Consensus 36 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~-~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L 112 (248)
.++.++.+++.|..+.-+.+.+++.++.|.+.++.-.+.. -+.++ -.++|+.|+++.| +|+...-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4677788888877666677777788888877776532111 11122 3578899998876 4665445566777888877
Q ss_pred Eccc
Q 039116 113 DLSN 116 (248)
Q Consensus 113 ~l~~ 116 (248)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7754
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.68 E-value=0.00065 Score=59.24 Aligned_cols=176 Identities=26% Similarity=0.289 Sum_probs=94.3
Q ss_pred ccEEEccccccccCc----hhhhhcCcCCcEEEcCCCcCCCCCChhh----cCC-ccccEEEecCcccccc----CCccc
Q 039116 13 LKILSVENNQFFGNI----PSGLRNLVNLELLHLGDNQFKGQIPGTI----GDL-LKLQRLTLQGNKFLGE----IPPSI 79 (248)
Q Consensus 13 L~~L~l~~~~i~~~~----p~~~~~l~~L~~L~l~~~~i~~~~~~~~----~~l-~~L~~L~l~~n~l~~~----~~~~l 79 (248)
+..+.+.+|.+.... -..+...+.|+.|++++|.+.+.....+ ... ..++.|++..|.++.. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 556677777765432 2344556777778888887773322221 121 3455666666666533 22344
Q ss_pred CCCCCccEEEccccccccc----CCcccc----CCCCCcEEEcccCcCccc----cchhhhhccccccEEEcccCcCCCC
Q 039116 80 GNLTLLTTLNFGENMLEES----IPSSLG----KCQNIALLDLSNNNLSGT----IPTEVIRLSSLSIYLDLSQNQLNGP 147 (248)
Q Consensus 80 ~~l~~L~~L~l~~n~~~~~----~~~~l~----~l~~L~~L~l~~n~i~~~----~~~~~~~~~~ll~~L~l~~n~i~~~ 147 (248)
.....++.+++..|.+... .+..+. ...+++++.+.+|.++.. +...+...+..+..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 4556677777777766311 122233 355677777777766511 1112233344224577777766533
Q ss_pred ----CCcCccCC-CCccEEEecCCcCCCccC----------CCCceEEccCCccee
Q 039116 148 ----FPSNFGVL-KNLGVIDISENKLSDDIP----------NSLENLNLSFNHFEG 188 (248)
Q Consensus 148 ----~~~~~~~~-~~L~~L~l~~n~i~~~~p----------~~L~~L~l~~n~l~~ 188 (248)
....+..+ +.++.++++.|.+++.-. +.++++.+.+|.++.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 12223333 556777777777764222 236666666666653
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.83 E-value=0.34 Score=23.60 Aligned_cols=13 Identities=46% Similarity=0.641 Sum_probs=6.2
Q ss_pred CCcEEEcCCCcCC
Q 039116 36 NLELLHLGDNQFK 48 (248)
Q Consensus 36 ~L~~L~l~~~~i~ 48 (248)
+|++|++++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.83 E-value=0.34 Score=23.60 Aligned_cols=13 Identities=46% Similarity=0.641 Sum_probs=6.2
Q ss_pred CCcEEEcCCCcCC
Q 039116 36 NLELLHLGDNQFK 48 (248)
Q Consensus 36 ~L~~L~l~~~~i~ 48 (248)
+|++|++++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.06 E-value=0.21 Score=23.88 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=11.4
Q ss_pred CccEEEccccccccCchhhh
Q 039116 12 QLKILSVENNQFFGNIPSGL 31 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~ 31 (248)
+|++|+|++|.|.......+
T Consensus 3 ~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 3 NLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp T-SEEE-TSSBEHHHHHHHH
T ss_pred CCCEEEccCCcCCHHHHHHh
Confidence 67778887777765444433
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.61 E-value=0.056 Score=41.24 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=42.9
Q ss_pred cccEEEecCccccccCCcccCCCCCccEEEcccccccc-cCCcccc-CCCCCcEEEcccCc-CccccchhhhhccccccE
Q 039116 60 KLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEE-SIPSSLG-KCQNIALLDLSNNN-LSGTIPTEVIRLSSLSIY 136 (248)
Q Consensus 60 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~-~l~~L~~L~l~~n~-i~~~~~~~~~~~~~ll~~ 136 (248)
.++.++.++..+..+.-+.+..++.++.|.+.++.--+ ..-..++ -.++|+.|++.+|. |+..-...+..+++| +.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL-r~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL-RR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh-HH
Confidence 46667777776665544556666666666665554211 1111111 23567777777653 443333445556666 55
Q ss_pred EEccc
Q 039116 137 LDLSQ 141 (248)
Q Consensus 137 L~l~~ 141 (248)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 55443
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.63 E-value=0.031 Score=43.72 Aligned_cols=87 Identities=15% Similarity=0.203 Sum_probs=46.3
Q ss_pred cCCCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCc
Q 039116 79 IGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNL 158 (248)
Q Consensus 79 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L 158 (248)
+..+...+.||++.|+.-. .-..++.++.+..++++.|.+. .+|...+....+ ..++.-.|..+ ..|.+++..+++
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~-~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRET-VNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHH-HHHHhhccchh-hCCccccccCCc
Confidence 3344455555555555432 2233444445555555555554 555555555555 45555555554 456666666666
Q ss_pred cEEEecCCcCC
Q 039116 159 GVIDISENKLS 169 (248)
Q Consensus 159 ~~L~l~~n~i~ 169 (248)
+.+++-+|.++
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 66666666544
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=83.50 E-value=0.0085 Score=52.38 Aligned_cols=162 Identities=22% Similarity=0.226 Sum_probs=104.0
Q ss_pred hcccCCccEEEccccccccCchhh----hhcC-cCCcEEEcCCCcCCCCC----ChhhcCCccccEEEecCccccc----
Q 039116 7 GSLSTQLKILSVENNQFFGNIPSG----LRNL-VNLELLHLGDNQFKGQI----PGTIGDLLKLQRLTLQGNKFLG---- 73 (248)
Q Consensus 7 ~~~~~~L~~L~l~~~~i~~~~p~~----~~~l-~~L~~L~l~~~~i~~~~----~~~~~~l~~L~~L~l~~n~l~~---- 73 (248)
...+ +|..|++++|.+...--.. +... ..+++|++..|.++... ...+.....++.++++.|.+..
T Consensus 112 ~t~~-~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~ 190 (478)
T KOG4308|consen 112 KTLP-TLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL 190 (478)
T ss_pred cccc-cHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence 3445 8889999999987332222 2222 45778888888887543 3445556678888888887631
Q ss_pred cCCcccC----CCCCccEEEcccccccccCCc----cccCCCC-CcEEEcccCcCccc----cchhhhhc-cccccEEEc
Q 039116 74 EIPPSIG----NLTLLTTLNFGENMLEESIPS----SLGKCQN-IALLDLSNNNLSGT----IPTEVIRL-SSLSIYLDL 139 (248)
Q Consensus 74 ~~~~~l~----~l~~L~~L~l~~n~~~~~~~~----~l~~l~~-L~~L~l~~n~i~~~----~~~~~~~~-~~ll~~L~l 139 (248)
.++..+. ...++++|.+.++.++..... .+...+. +..+++..|.+.+. +.+.+... ..+ +.+++
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l-~~l~l 269 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETL-RVLDL 269 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhh-hhhhh
Confidence 1222333 467899999999887743222 2344444 66688888887632 22223333 445 78999
Q ss_pred ccCcCCCCCCc----CccCCCCccEEEecCCcCCC
Q 039116 140 SQNQLNGPFPS----NFGVLKNLGVIDISENKLSD 170 (248)
Q Consensus 140 ~~n~i~~~~~~----~~~~~~~L~~L~l~~n~i~~ 170 (248)
+.|.+++.... ....++.++.+.++.|.+.+
T Consensus 270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 270 SRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 99998764333 33456789999999999874
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=82.90 E-value=0.49 Score=41.25 Aligned_cols=107 Identities=22% Similarity=0.174 Sum_probs=48.8
Q ss_pred CccEEEccccccccC--chhhhhcCcCCcEEEcCCC-cCCCCCC----hhhcCCccccEEEecCcc-ccccCCcccC-CC
Q 039116 12 QLKILSVENNQFFGN--IPSGLRNLVNLELLHLGDN-QFKGQIP----GTIGDLLKLQRLTLQGNK-FLGEIPPSIG-NL 82 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~--~p~~~~~l~~L~~L~l~~~-~i~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~l~-~l 82 (248)
.|+.+.+.++.-... .-......++|+.|+++++ ......+ .....+++|+.++++++. +++..-..+. .+
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 556666655542222 2233345566666666652 1110111 122234566666666655 3322212222 25
Q ss_pred CCccEEEccccc-ccccCCc-cccCCCCCcEEEcccCc
Q 039116 83 TLLTTLNFGENM-LEESIPS-SLGKCQNIALLDLSNNN 118 (248)
Q Consensus 83 ~~L~~L~l~~n~-~~~~~~~-~l~~l~~L~~L~l~~n~ 118 (248)
++|+.|.+..+. ++...-. ....++.|++|++.++.
T Consensus 269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 566666655544 3322111 22345556666666554
No 79
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=80.05 E-value=1 Score=47.04 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=26.7
Q ss_pred EccCCcceeecc-CCcccCCCceeeecCCcccee
Q 039116 180 NLSFNHFEGEVP-IKGVFNNSSAISLDGNDNLCG 212 (248)
Q Consensus 180 ~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~~~ 212 (248)
||++|+|+...+ .+..+++|+.|+|++|||-|.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 577888886655 667788999999999999994
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.02 E-value=1.3 Score=21.84 Aligned_cols=13 Identities=46% Similarity=0.613 Sum_probs=5.9
Q ss_pred CCceEEccCCcce
Q 039116 175 SLENLNLSFNHFE 187 (248)
Q Consensus 175 ~L~~L~l~~n~l~ 187 (248)
.|++|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444444444444
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=74.92 E-value=1.5 Score=38.22 Aligned_cols=111 Identities=23% Similarity=0.187 Sum_probs=66.7
Q ss_pred cCcCCcEEEcCCCcCCCC--CChhhcCCccccEEEecCc-cccccCC----cccCCCCCccEEEccccc-ccccCCcccc
Q 039116 33 NLVNLELLHLGDNQFKGQ--IPGTIGDLLKLQRLTLQGN-KFLGEIP----PSIGNLTLLTTLNFGENM-LEESIPSSLG 104 (248)
Q Consensus 33 ~l~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~~----~~l~~l~~L~~L~l~~n~-~~~~~~~~l~ 104 (248)
..+.|+.+.+.++.-... ........++|+.|+++++ ......+ .....+.+|+.+++.++. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 467888888887733322 2234456788999998873 1111111 223345788889888877 5543333333
Q ss_pred -CCCCCcEEEcccCc-Ccccc-chhhhhccccccEEEcccCcC
Q 039116 105 -KCQNIALLDLSNNN-LSGTI-PTEVIRLSSLSIYLDLSQNQL 144 (248)
Q Consensus 105 -~l~~L~~L~l~~n~-i~~~~-~~~~~~~~~ll~~L~l~~n~i 144 (248)
.+++|+.|.+..+. ++..- ......++.| ++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L-~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSL-RELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcc-cEEeeecCcc
Confidence 26788888876665 44222 2223345667 8899988765
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.51 E-value=2.9 Score=20.58 Aligned_cols=13 Identities=54% Similarity=0.713 Sum_probs=6.6
Q ss_pred CCcEEEcCCCcCC
Q 039116 36 NLELLHLGDNQFK 48 (248)
Q Consensus 36 ~L~~L~l~~~~i~ 48 (248)
+|+.|++++|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4455555555554
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=70.22 E-value=3.8 Score=20.36 Aligned_cols=14 Identities=43% Similarity=0.624 Sum_probs=8.2
Q ss_pred CCccEEEecCCcCC
Q 039116 156 KNLGVIDISENKLS 169 (248)
Q Consensus 156 ~~L~~L~l~~n~i~ 169 (248)
++|+.|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34566666666654
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.03 E-value=2.2 Score=37.79 Aligned_cols=73 Identities=26% Similarity=0.316 Sum_probs=43.5
Q ss_pred hccccccEEEcccCcCCCCC--CcCccCCCCccEEEecCC--cCCC--ccC----CCCceEEccCCcceeecc-------
Q 039116 129 RLSSLSIYLDLSQNQLNGPF--PSNFGVLKNLGVIDISEN--KLSD--DIP----NSLENLNLSFNHFEGEVP------- 191 (248)
Q Consensus 129 ~~~~ll~~L~l~~n~i~~~~--~~~~~~~~~L~~L~l~~n--~i~~--~~p----~~L~~L~l~~n~l~~~~~------- 191 (248)
+.+.+ ..+.+++|++.... .......|+|+.|+|++| .+.. +++ ..|++|-+.||++.....
T Consensus 216 n~p~i-~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEI-LSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcce-eeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 44566 67888888775321 222235788888888888 3321 122 127888888888775432
Q ss_pred -CCcccCCCcee
Q 039116 192 -IKGVFNNSSAI 202 (248)
Q Consensus 192 -~~~~~~~l~~l 202 (248)
....||.|..|
T Consensus 295 ~i~~~FPKL~~L 306 (585)
T KOG3763|consen 295 AIRELFPKLLRL 306 (585)
T ss_pred HHHHhcchheee
Confidence 22356666654
No 85
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=59.02 E-value=6.5 Score=33.78 Aligned_cols=130 Identities=19% Similarity=0.209 Sum_probs=72.3
Q ss_pred CccEEEccccccccC-chhhh-hcCcCCcEEEcCCCc-CCCCCChhh-cCCccccEEEecCcccccc--CCcccCCCCCc
Q 039116 12 QLKILSVENNQFFGN-IPSGL-RNLVNLELLHLGDNQ-FKGQIPGTI-GDLLKLQRLTLQGNKFLGE--IPPSIGNLTLL 85 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~-~p~~~-~~l~~L~~L~l~~~~-i~~~~~~~~-~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L 85 (248)
.|+.|+.+++.-.+. .-.++ .+.++|+.+.+++++ ++...-..+ .+.+.|+.+++..+..... +...-.+++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 567777776653221 12223 456778888888875 332222222 2467788888877654311 11112356788
Q ss_pred cEEEccccccc-ccC----CccccCCCCCcEEEcccCcCc-cccchhhhhccccccEEEcccC
Q 039116 86 TTLNFGENMLE-ESI----PSSLGKCQNIALLDLSNNNLS-GTIPTEVIRLSSLSIYLDLSQN 142 (248)
Q Consensus 86 ~~L~l~~n~~~-~~~----~~~l~~l~~L~~L~l~~n~i~-~~~~~~~~~~~~ll~~L~l~~n 142 (248)
+.+.++.+... ... ...-..+..|..+.++.+... +...+.+...+++ +.+++-++
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L-eri~l~~~ 436 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL-ERIELIDC 436 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc-ceeeeech
Confidence 88888876532 211 111234556777788777643 3344555666777 66666554
No 86
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=54.66 E-value=22 Score=19.73 Aligned_cols=11 Identities=45% Similarity=0.905 Sum_probs=5.0
Q ss_pred ccCCCCceEEc
Q 039116 171 DIPNSLENLNL 181 (248)
Q Consensus 171 ~~p~~L~~L~l 181 (248)
.+|.++++|.+
T Consensus 31 ~lP~sl~~L~f 41 (44)
T PF05725_consen 31 SLPNSLKSLSF 41 (44)
T ss_pred ccCCCceEEEe
Confidence 34444444443
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=52.74 E-value=8.6 Score=33.10 Aligned_cols=129 Identities=22% Similarity=0.194 Sum_probs=62.7
Q ss_pred CCCccEEEcccccc-cccCCccc-cCCCCCcEEEcccCc-Cccccchhh-hhccccccEEEcccCcCCCC--CCcCccCC
Q 039116 82 LTLLTTLNFGENML-EESIPSSL-GKCQNIALLDLSNNN-LSGTIPTEV-IRLSSLSIYLDLSQNQLNGP--FPSNFGVL 155 (248)
Q Consensus 82 l~~L~~L~l~~n~~-~~~~~~~l-~~l~~L~~L~l~~n~-i~~~~~~~~-~~~~~ll~~L~l~~n~i~~~--~~~~~~~~ 155 (248)
+..||.++.+.+.- +...-..+ .+..+|+.+.+.+++ ++..--..+ .+++.| +.+++.++..... +...-.++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L-e~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL-ERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh-hhhcccccceehhhhHhhhccCC
Confidence 45567776665432 21111122 345677777776654 221101111 234555 6666665543211 12222356
Q ss_pred CCccEEEecCCcCCCcc-----------CCCCceEEccCCcceeecc--CCcccCCCceeeecCCccce
Q 039116 156 KNLGVIDISENKLSDDI-----------PNSLENLNLSFNHFEGEVP--IKGVFNNSSAISLDGNDNLC 211 (248)
Q Consensus 156 ~~L~~L~l~~n~i~~~~-----------p~~L~~L~l~~n~l~~~~~--~~~~~~~l~~l~l~~n~~~~ 211 (248)
+.|+.+.+++|....+. -..++.+.+++++.+.... .....++|+.+++-++..+.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 77777777766532211 1226666666666553322 44455566666665554443
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=41.05 E-value=18 Score=17.30 Aligned_cols=12 Identities=33% Similarity=0.398 Sum_probs=8.3
Q ss_pred CCccEEEecCCc
Q 039116 156 KNLGVIDISENK 167 (248)
Q Consensus 156 ~~L~~L~l~~n~ 167 (248)
++|+.|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 567777777774
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.74 E-value=13 Score=33.10 Aligned_cols=12 Identities=33% Similarity=0.451 Sum_probs=6.1
Q ss_pred CCCccEEEcccc
Q 039116 82 LTLLTTLNFGEN 93 (248)
Q Consensus 82 l~~L~~L~l~~n 93 (248)
.|+|.+|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 345555555555
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.42 E-value=39 Score=36.40 Aligned_cols=31 Identities=42% Similarity=0.533 Sum_probs=20.5
Q ss_pred EcccCcCccccch-hhhhccccccEEEcccCcCC
Q 039116 113 DLSNNNLSGTIPT-EVIRLSSLSIYLDLSQNQLN 145 (248)
Q Consensus 113 ~l~~n~i~~~~~~-~~~~~~~ll~~L~l~~n~i~ 145 (248)
+|++|+|+ .++. .+..+++| +.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL-~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNL-SEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCc-eEEEeeCCccc
Confidence 35677777 4444 34456677 78888888775
Done!