Query 039116
Match_columns 248
No_of_seqs 175 out of 2273
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 10:33:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.6E-30 5.4E-35 213.6 15.0 211 2-216 68-286 (313)
2 1ogq_A PGIP-2, polygalacturona 100.0 2E-29 6.8E-34 207.0 15.5 208 2-213 93-307 (313)
3 3rgz_A Protein brassinosteroid 100.0 5.7E-29 1.9E-33 226.8 19.1 220 2-227 458-753 (768)
4 3rgz_A Protein brassinosteroid 100.0 3.8E-28 1.3E-32 221.4 21.3 211 3-216 435-722 (768)
5 1ozn_A Reticulon 4 receptor; N 99.9 4.7E-27 1.6E-31 190.3 16.4 202 10-212 31-240 (285)
6 4fcg_A Uncharacterized protein 99.9 8.4E-27 2.9E-31 192.6 17.6 198 12-216 82-295 (328)
7 3zyj_A Leucine-rich repeat-con 99.9 2E-26 6.7E-31 197.6 18.0 205 4-212 82-294 (440)
8 2z62_A TOLL-like receptor 4, v 99.9 1.6E-26 5.3E-31 186.4 14.6 207 2-212 22-239 (276)
9 3zyi_A Leucine-rich repeat-con 99.9 2.8E-26 9.6E-31 197.3 16.9 198 12-212 76-305 (452)
10 1ozn_A Reticulon 4 receptor; N 99.9 3.4E-26 1.2E-30 185.2 15.2 207 4-212 50-263 (285)
11 4fcg_A Uncharacterized protein 99.9 7.6E-26 2.6E-30 186.8 17.1 201 1-207 95-311 (328)
12 2id5_A Lingo-1, leucine rich r 99.9 9.3E-26 3.2E-30 195.2 18.1 229 4-234 50-318 (477)
13 2z66_A Variable lymphocyte rec 99.9 6.6E-26 2.3E-30 185.3 15.5 203 7-212 49-263 (306)
14 3v47_A TOLL-like receptor 5B a 99.9 7.4E-26 2.5E-30 194.5 15.8 117 3-120 47-167 (455)
15 3v47_A TOLL-like receptor 5B a 99.9 2.4E-25 8.2E-30 191.3 16.9 111 100-211 292-409 (455)
16 2o6q_A Variable lymphocyte rec 99.9 1.4E-24 4.7E-29 174.5 19.3 197 12-212 17-220 (270)
17 3o6n_A APL1; leucine-rich repe 99.9 1.7E-24 5.7E-29 182.8 19.8 221 2-228 60-334 (390)
18 1wwl_A Monocyte differentiatio 99.9 2.5E-25 8.7E-30 182.4 14.0 197 8-209 93-308 (312)
19 4eco_A Uncharacterized protein 99.9 5.3E-26 1.8E-30 203.2 10.1 163 2-169 198-390 (636)
20 2id5_A Lingo-1, leucine rich r 99.9 1.6E-24 5.5E-29 187.4 19.0 221 3-225 73-333 (477)
21 3t6q_A CD180 antigen; protein- 99.9 1.2E-24 4.2E-29 193.2 18.1 225 2-230 293-541 (606)
22 3oja_B Anopheles plasmodium-re 99.9 2.2E-24 7.6E-29 191.5 19.5 220 2-227 66-339 (597)
23 1p9a_G Platelet glycoprotein I 99.9 1.8E-24 6.3E-29 175.6 17.3 199 6-212 6-210 (290)
24 2z80_A TOLL-like receptor 2, v 99.9 3.5E-25 1.2E-29 184.6 12.8 156 12-168 53-210 (353)
25 4eco_A Uncharacterized protein 99.9 1.4E-25 4.6E-30 200.6 10.9 201 27-232 198-453 (636)
26 3zyj_A Leucine-rich repeat-con 99.9 3.2E-24 1.1E-28 183.8 19.0 201 2-208 58-266 (440)
27 3zyi_A Leucine-rich repeat-con 99.9 2.7E-24 9.1E-29 184.9 18.3 216 12-232 55-286 (452)
28 2z66_A Variable lymphocyte rec 99.9 8.8E-25 3E-29 178.6 14.5 213 11-225 28-261 (306)
29 3t6q_A CD180 antigen; protein- 99.9 1E-24 3.4E-29 193.8 15.0 204 6-212 346-562 (606)
30 1xku_A Decorin; proteoglycan, 99.9 6.3E-24 2.2E-28 175.3 18.2 194 11-207 52-273 (330)
31 3o6n_A APL1; leucine-rich repe 99.9 6.2E-24 2.1E-28 179.2 18.4 200 4-207 87-328 (390)
32 1xku_A Decorin; proteoglycan, 99.9 1E-23 3.4E-28 174.1 19.1 189 12-207 32-226 (330)
33 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-24 4.4E-29 193.1 14.1 204 6-212 346-560 (606)
34 2ft3_A Biglycan; proteoglycan, 99.9 5.4E-24 1.8E-28 175.9 16.6 193 12-208 55-275 (332)
35 2z80_A TOLL-like receptor 2, v 99.9 2.8E-24 9.6E-29 179.1 14.7 202 5-208 71-288 (353)
36 3oja_B Anopheles plasmodium-re 99.9 5.4E-24 1.8E-28 189.0 17.0 204 3-212 92-360 (597)
37 4ecn_A Leucine-rich repeat pro 99.9 7.2E-25 2.4E-29 200.6 11.4 182 2-190 440-660 (876)
38 3oja_A Leucine-rich immune mol 99.9 1.8E-24 6.2E-29 187.6 12.7 209 2-215 22-255 (487)
39 1ziw_A TOLL-like receptor 3; i 99.9 1E-23 3.4E-28 189.8 17.6 208 4-213 399-625 (680)
40 4ecn_A Leucine-rich repeat pro 99.9 4E-24 1.4E-28 195.7 13.9 221 2-229 481-745 (876)
41 1ziw_A TOLL-like receptor 3; i 99.9 6.5E-23 2.2E-27 184.5 21.5 147 4-152 43-191 (680)
42 2ft3_A Biglycan; proteoglycan, 99.9 1.9E-23 6.5E-28 172.7 16.0 150 12-169 34-185 (332)
43 2o6q_A Variable lymphocyte rec 99.9 5.9E-23 2E-27 165.0 18.3 180 11-191 37-222 (270)
44 3o53_A Protein LRIM1, AGAP0063 99.9 8.1E-24 2.8E-28 173.9 13.3 205 6-215 29-255 (317)
45 2xwt_C Thyrotropin receptor; s 99.9 1.3E-23 4.6E-28 165.7 14.0 194 10-209 30-238 (239)
46 3rfs_A Internalin B, repeat mo 99.9 5.9E-23 2E-27 165.1 17.9 197 7-216 38-240 (272)
47 3rfs_A Internalin B, repeat mo 99.9 2.5E-23 8.5E-28 167.4 15.1 183 4-191 57-239 (272)
48 4glp_A Monocyte differentiatio 99.9 1.5E-23 5.3E-28 171.7 14.1 194 12-209 92-306 (310)
49 3j0a_A TOLL-like receptor 5; m 99.9 5.3E-23 1.8E-27 189.3 19.1 140 4-145 42-187 (844)
50 2z7x_B TOLL-like receptor 1, v 99.9 7.9E-23 2.7E-27 178.5 17.0 99 130-229 323-438 (520)
51 3vq2_A TLR4, TOLL-like recepto 99.9 7E-23 2.4E-27 182.0 16.6 133 12-145 33-166 (606)
52 1wwl_A Monocyte differentiatio 99.9 4.5E-24 1.5E-28 175.0 7.3 200 2-208 57-285 (312)
53 2z81_A CD282 antigen, TOLL-lik 99.9 5E-23 1.7E-27 180.8 14.0 203 2-208 20-234 (549)
54 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-22 4.1E-27 186.9 16.3 222 3-226 66-376 (844)
55 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.3E-22 7.8E-27 177.3 16.8 103 12-117 53-156 (562)
56 2z62_A TOLL-like receptor 4, v 99.9 3.6E-22 1.2E-26 160.8 16.4 185 4-191 46-241 (276)
57 2z63_A TOLL-like receptor 4, v 99.9 2E-22 6.9E-27 177.6 15.9 174 10-184 27-210 (570)
58 3m19_A Variable lymphocyte rec 99.9 4.8E-22 1.7E-26 158.0 16.6 174 12-189 15-194 (251)
59 2z7x_B TOLL-like receptor 1, v 99.9 7.8E-22 2.7E-26 172.2 18.9 127 80-207 321-454 (520)
60 1h6u_A Internalin H; cell adhe 99.9 6.6E-22 2.3E-26 161.8 17.3 190 6-210 37-230 (308)
61 1p9a_G Platelet glycoprotein I 99.9 6.8E-22 2.3E-26 160.4 16.9 181 2-190 25-211 (290)
62 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.3E-22 2.2E-26 174.5 17.9 215 3-225 69-441 (562)
63 2z81_A CD282 antigen, TOLL-lik 99.9 7.7E-23 2.6E-27 179.6 11.7 183 3-188 43-237 (549)
64 3m19_A Variable lymphocyte rec 99.9 1.1E-21 3.7E-26 155.9 16.9 159 12-171 36-194 (251)
65 2z63_A TOLL-like receptor 4, v 99.9 3.2E-22 1.1E-26 176.3 14.1 197 12-212 326-533 (570)
66 4fmz_A Internalin; leucine ric 99.9 4.4E-21 1.5E-25 159.2 19.8 81 6-93 62-142 (347)
67 4fmz_A Internalin; leucine ric 99.9 1.8E-20 6E-25 155.5 20.6 211 6-229 84-328 (347)
68 1o6v_A Internalin A; bacterial 99.9 2.3E-20 7.9E-25 161.0 18.6 187 6-207 173-363 (466)
69 2o6s_A Variable lymphocyte rec 99.9 7.1E-21 2.4E-25 146.9 13.7 174 13-191 9-182 (208)
70 3o53_A Protein LRIM1, AGAP0063 99.9 3.2E-21 1.1E-25 158.4 12.1 194 12-208 11-225 (317)
71 1o6v_A Internalin A; bacterial 99.9 2.9E-20 1E-24 160.3 18.4 192 5-211 194-389 (466)
72 3bz5_A Internalin-J, INLJ; leu 99.9 6.2E-20 2.1E-24 157.9 20.2 184 4-207 36-243 (457)
73 2xwt_C Thyrotropin receptor; s 99.8 7.1E-21 2.4E-25 150.0 12.5 175 5-184 50-236 (239)
74 3goz_A Leucine-rich repeat-con 99.8 6.8E-22 2.3E-26 165.3 6.1 222 5-227 16-299 (362)
75 1jl5_A Outer protein YOPM; leu 99.8 9.2E-21 3.2E-25 162.9 12.9 210 2-227 26-272 (454)
76 1h6u_A Internalin H; cell adhe 99.8 4.8E-20 1.6E-24 150.8 16.6 173 5-191 58-234 (308)
77 3oja_A Leucine-rich immune mol 99.8 2.5E-20 8.6E-25 161.6 14.5 196 26-225 21-250 (487)
78 2o6s_A Variable lymphocyte rec 99.8 1.2E-20 4.1E-25 145.7 11.2 162 10-179 27-188 (208)
79 3bz5_A Internalin-J, INLJ; leu 99.8 3.1E-19 1.1E-23 153.5 20.5 181 5-205 59-262 (457)
80 4g8a_A TOLL-like receptor 4; l 99.8 1.1E-20 3.9E-25 168.0 11.6 176 9-185 50-235 (635)
81 2ast_B S-phase kinase-associat 99.8 2.1E-21 7.1E-26 160.4 4.3 217 12-230 71-311 (336)
82 2v9t_B SLIT homolog 2 protein 99.8 1E-19 3.5E-24 141.7 13.6 154 13-170 13-166 (220)
83 4ezg_A Putative uncharacterize 99.8 1.1E-19 3.8E-24 139.1 13.4 149 12-169 45-194 (197)
84 3e6j_A Variable lymphocyte rec 99.8 2.6E-19 8.9E-24 140.3 15.6 157 12-173 20-176 (229)
85 4glp_A Monocyte differentiatio 99.8 1.6E-20 5.5E-25 153.7 8.9 181 2-188 107-308 (310)
86 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-19 5.7E-24 140.6 13.3 156 12-171 12-168 (220)
87 4g8a_A TOLL-like receptor 4; l 99.8 1.7E-19 5.9E-24 160.4 15.1 191 14-208 34-235 (635)
88 1jl5_A Outer protein YOPM; leu 99.8 3.4E-20 1.2E-24 159.4 9.3 207 3-228 5-231 (454)
89 1h6t_A Internalin B; cell adhe 99.8 5.8E-19 2E-23 143.2 15.5 169 7-189 43-215 (291)
90 2ca6_A RAN GTPase-activating p 99.8 6.3E-21 2.1E-25 160.7 3.6 224 2-227 24-318 (386)
91 4ay9_X Follicle-stimulating ho 99.8 4.5E-19 1.5E-23 147.5 14.7 201 2-207 24-256 (350)
92 2ca6_A RAN GTPase-activating p 99.8 4.6E-21 1.6E-25 161.5 1.8 202 5-208 55-314 (386)
93 3goz_A Leucine-rich repeat-con 99.8 2.3E-20 7.8E-25 156.0 5.5 204 4-208 44-295 (362)
94 2xot_A Amphoterin-induced prot 99.8 3.4E-19 1.1E-23 148.9 12.2 173 13-189 20-204 (361)
95 2xot_A Amphoterin-induced prot 99.8 1.3E-19 4.4E-24 151.4 9.3 159 10-170 38-203 (361)
96 3cvr_A Invasion plasmid antige 99.8 2E-18 6.8E-23 151.6 16.7 173 12-209 60-242 (571)
97 3g06_A SSPH2 (leucine-rich rep 99.8 4.6E-18 1.6E-22 150.9 19.0 191 12-227 62-276 (622)
98 2v9t_B SLIT homolog 2 protein 99.8 8.3E-19 2.8E-23 136.6 11.7 140 2-145 26-165 (220)
99 2ast_B S-phase kinase-associat 99.8 3.2E-20 1.1E-24 153.3 3.8 206 5-216 88-311 (336)
100 1h6t_A Internalin B; cell adhe 99.8 2.7E-18 9.1E-23 139.3 14.9 181 15-209 28-212 (291)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-18 6.7E-23 134.5 13.1 151 37-191 13-170 (220)
102 1m9s_A Internalin B; cell inva 99.8 3.1E-18 1E-22 151.8 14.6 170 7-190 40-213 (605)
103 1z7x_W Ribonuclease inhibitor; 99.8 6.5E-20 2.2E-24 157.6 3.5 189 37-226 87-327 (461)
104 3g06_A SSPH2 (leucine-rich rep 99.8 9.5E-18 3.2E-22 148.9 17.0 179 12-209 82-296 (622)
105 4ezg_A Putative uncharacterize 99.8 5.8E-18 2E-22 129.5 13.5 149 32-187 41-194 (197)
106 3e6j_A Variable lymphocyte rec 99.8 5E-18 1.7E-22 133.0 13.2 140 2-146 34-173 (229)
107 4ay9_X Follicle-stimulating ho 99.8 2.4E-18 8.2E-23 143.1 12.0 177 2-185 45-257 (350)
108 1xeu_A Internalin C; cellular 99.8 1.1E-17 3.8E-22 133.7 14.7 144 12-169 42-185 (263)
109 1z7x_W Ribonuclease inhibitor; 99.8 4.4E-20 1.5E-24 158.7 0.2 133 12-145 143-297 (461)
110 1xeu_A Internalin C; cellular 99.7 1E-17 3.4E-22 134.0 9.8 165 12-190 20-188 (263)
111 1m9s_A Internalin B; cell inva 99.7 5.9E-17 2E-21 143.5 15.7 154 5-172 60-213 (605)
112 1w8a_A SLIT protein; signaling 99.7 1.7E-17 5.7E-22 126.5 10.4 112 60-172 30-142 (192)
113 4b8c_D Glucose-repressible alc 99.7 7.2E-19 2.5E-23 159.1 2.8 118 51-173 216-333 (727)
114 3cvr_A Invasion plasmid antige 99.7 6.6E-17 2.3E-21 142.0 13.9 161 2-191 74-247 (571)
115 1dce_A Protein (RAB geranylger 99.7 4.6E-19 1.6E-23 156.0 -1.7 187 8-203 347-566 (567)
116 2ell_A Acidic leucine-rich nuc 99.7 8.8E-17 3E-21 119.7 10.6 132 34-169 23-160 (168)
117 2ell_A Acidic leucine-rich nuc 99.7 6.9E-17 2.4E-21 120.3 9.9 136 10-150 23-164 (168)
118 1w8a_A SLIT protein; signaling 99.7 2.3E-16 7.8E-21 120.1 11.0 131 12-146 9-140 (192)
119 4b8c_D Glucose-repressible alc 99.7 2.1E-17 7.2E-22 149.5 5.2 178 26-208 215-402 (727)
120 2je0_A Acidic leucine-rich nuc 99.6 2.4E-16 8.3E-21 115.0 7.5 127 35-164 17-148 (149)
121 1dce_A Protein (RAB geranylger 99.6 9.5E-18 3.2E-22 147.7 -0.3 165 2-173 364-550 (567)
122 2je0_A Acidic leucine-rich nuc 99.6 2.6E-16 8.8E-21 114.8 7.2 128 11-141 17-149 (149)
123 2wfh_A SLIT homolog 2 protein 99.6 1.8E-15 6E-20 115.3 11.8 108 60-169 32-139 (193)
124 2o6r_A Variable lymphocyte rec 99.6 5.3E-15 1.8E-19 111.0 13.3 131 38-172 10-140 (177)
125 2wfh_A SLIT homolog 2 protein 99.6 4.4E-15 1.5E-19 113.1 12.2 127 14-145 13-139 (193)
126 2o6r_A Variable lymphocyte rec 99.6 7.9E-15 2.7E-19 110.0 12.5 130 12-146 8-138 (177)
127 1a9n_A U2A', U2A'; complex (nu 99.6 2.7E-15 9.2E-20 112.5 7.5 132 31-169 15-153 (176)
128 1a9n_A U2A', U2A'; complex (nu 99.6 4.1E-15 1.4E-19 111.5 7.8 131 7-145 16-153 (176)
129 1ds9_A Outer arm dynein; leuci 99.6 3.3E-17 1.1E-21 125.4 -5.2 127 12-145 19-153 (198)
130 3ogk_B Coronatine-insensitive 99.5 2.6E-15 8.9E-20 132.8 3.3 197 26-225 284-526 (592)
131 3ogk_B Coronatine-insensitive 99.5 1.9E-15 6.6E-20 133.6 0.2 206 2-211 285-526 (592)
132 3g39_A Variable lymphocyte rec 99.5 1.7E-13 5.8E-18 102.1 10.2 106 12-120 10-115 (170)
133 1ds9_A Outer arm dynein; leuci 99.5 6.5E-16 2.2E-20 118.1 -3.4 138 30-173 13-157 (198)
134 2r9u_A Variable lymphocyte rec 99.5 3E-13 1E-17 101.2 10.7 106 12-120 13-118 (174)
135 3sb4_A Hypothetical leucine ri 99.5 3.5E-13 1.2E-17 110.9 11.9 203 12-222 50-320 (329)
136 2p1m_B Transport inhibitor res 99.4 9.6E-15 3.3E-19 129.1 -1.2 195 12-209 290-518 (594)
137 3g39_A Variable lymphocyte rec 99.4 1.7E-12 5.9E-17 96.6 11.3 107 61-171 11-117 (170)
138 2r9u_A Variable lymphocyte rec 99.4 4.5E-12 1.5E-16 94.7 11.3 104 62-170 15-119 (174)
139 3sb4_A Hypothetical leucine ri 99.4 3.1E-12 1E-16 105.3 10.4 157 9-170 100-311 (329)
140 3un9_A NLR family member X1; l 99.3 6E-14 2.1E-18 117.4 -1.0 157 12-169 73-252 (372)
141 2p1m_B Transport inhibitor res 99.3 4.5E-13 1.5E-17 118.4 1.9 127 12-140 106-243 (594)
142 2ifg_A High affinity nerve gro 99.3 1.3E-11 4.5E-16 102.1 9.2 104 14-120 11-116 (347)
143 4fdw_A Leucine rich hypothetic 99.2 2.2E-10 7.4E-15 96.7 15.7 148 12-168 136-283 (401)
144 4fdw_A Leucine rich hypothetic 99.2 3.3E-10 1.1E-14 95.6 16.4 186 12-208 158-356 (401)
145 3un9_A NLR family member X1; l 99.2 2.6E-13 8.8E-18 113.5 -2.9 155 34-189 71-254 (372)
146 2ifg_A High affinity nerve gro 99.2 2.7E-11 9.2E-16 100.2 8.4 94 1-97 23-117 (347)
147 2ra8_A Uncharacterized protein 98.9 8E-10 2.7E-14 91.9 6.0 155 30-188 134-321 (362)
148 2ra8_A Uncharacterized protein 98.6 3.1E-08 1.1E-12 82.3 5.6 177 4-185 133-341 (362)
149 1io0_A Tropomodulin; LRR prote 98.6 1.2E-08 3.9E-13 76.8 1.4 116 29-145 30-164 (185)
150 1io0_A Tropomodulin; LRR prote 98.5 2.2E-08 7.6E-13 75.3 2.4 16 33-48 63-78 (185)
151 3e4g_A ATP synthase subunit S, 98.4 1.3E-07 4.3E-12 70.1 2.8 84 35-118 61-150 (176)
152 3rw6_A Nuclear RNA export fact 98.3 1.4E-07 4.8E-12 74.8 1.4 79 57-138 168-257 (267)
153 3rw6_A Nuclear RNA export fact 98.3 9.3E-07 3.2E-11 70.1 5.2 99 12-113 142-257 (267)
154 3e4g_A ATP synthase subunit S, 98.1 1.6E-06 5.6E-11 64.1 3.8 84 83-167 61-150 (176)
155 4fs7_A Uncharacterized protein 98.1 3.2E-05 1.1E-09 64.8 12.1 73 130-207 296-376 (394)
156 4gt6_A Cell surface protein; l 98.0 0.00012 4E-09 61.3 13.9 33 12-45 65-97 (394)
157 4fs7_A Uncharacterized protein 97.9 0.0001 3.5E-09 61.7 10.9 161 12-184 209-376 (394)
158 4gt6_A Cell surface protein; l 97.8 6.2E-05 2.1E-09 63.0 8.9 114 50-168 256-369 (394)
159 4h09_A Hypothetical leucine ri 97.8 0.00017 5.9E-09 59.9 10.5 149 12-166 195-343 (379)
160 4h09_A Hypothetical leucine ri 97.7 0.00023 7.8E-09 59.1 10.8 131 31-166 190-320 (379)
161 3rfe_A Platelet glycoprotein I 97.7 5.2E-05 1.8E-09 53.2 5.3 53 160-212 12-70 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00011 3.7E-09 55.3 2.8 83 34-116 40-135 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00024 8.1E-09 53.5 3.1 41 32-72 67-111 (197)
164 3rfe_A Platelet glycoprotein I 96.8 0.0017 5.9E-08 45.4 5.1 35 36-70 32-66 (130)
165 2lz0_A Uncharacterized protein 73.9 8.3 0.00028 25.0 5.4 45 23-68 8-52 (100)
166 2lz0_A Uncharacterized protein 70.5 15 0.00051 23.7 6.0 49 45-94 6-54 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.6e-30 Score=213.57 Aligned_cols=211 Identities=30% Similarity=0.517 Sum_probs=157.0
Q ss_pred CchhhhcccCCccEEEccc-cccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccC
Q 039116 2 LPEAVGSLSTQLKILSVEN-NQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIG 80 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~-~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 80 (248)
+|+.+++++ +|++|++++ |.+.+..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+.+..|..+.
T Consensus 68 ~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 68 IPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp CCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred cChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 577788877 888888884 777777888888888888888888888877788888888888888888888877788888
Q ss_pred CCCCccEEEcccccccccCCccccCCC-CCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCcc
Q 039116 81 NLTLLTTLNFGENMLEESIPSSLGKCQ-NIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLG 159 (248)
Q Consensus 81 ~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~ 159 (248)
.+++|++|++++|.+++..|..+..++ +|+.|++.+|.+++..|..+..+. + ++|++++|.+++..|..+..+++|+
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-~~L~Ls~N~l~~~~~~~~~~l~~L~ 224 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-AFVDLSRNMLEGDASVLFGSDKNTQ 224 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C-SEEECCSSEEEECCGGGCCTTSCCS
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c-cEEECcCCcccCcCCHHHhcCCCCC
Confidence 888888888888888766777777777 788888888888767777666665 5 7777777777766666677777777
Q ss_pred EEEecCCcCCCccC-----CCCceEEccCCcceeecc-CCcccCCCceeeecCCccceeccCc
Q 039116 160 VIDISENKLSDDIP-----NSLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNLCGGISE 216 (248)
Q Consensus 160 ~L~l~~n~i~~~~p-----~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~~~~l~~ 216 (248)
.|++++|.+++.+| ..|++|++++|++++..| .+..+++|+.|++++| .+.|.+|+
T Consensus 225 ~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~ip~ 286 (313)
T 1ogq_A 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQ 286 (313)
T ss_dssp EEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS-EEEEECCC
T ss_pred EEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC-cccccCCC
Confidence 77777777765443 346667777776665555 4555666666666666 35554543
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=2e-29 Score=207.04 Aligned_cols=208 Identities=30% Similarity=0.515 Sum_probs=145.6
Q ss_pred CchhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCC
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGN 81 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 81 (248)
+|..+++++ +|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+..
T Consensus 93 ~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 171 (313)
T 1ogq_A 93 IPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171 (313)
T ss_dssp CCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred CChhHhcCC-CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh
Confidence 566676666 7777777777776667777777777777777777777666777777777777777777776666777776
Q ss_pred CC-CccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccE
Q 039116 82 LT-LLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGV 160 (248)
Q Consensus 82 l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~ 160 (248)
++ +|+.|++++|.+++..|..+..+. |+.|++.+|.+++..+..+..++++ ++|++++|.+++..+. +..+++|+.
T Consensus 172 l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~-~~~l~~L~~ 248 (313)
T 1ogq_A 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT-QKIHLAKNSLAFDLGK-VGLSKNLNG 248 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCC-SEEECCSSEECCBGGG-CCCCTTCCE
T ss_pred hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCC-CEEECCCCceeeecCc-ccccCCCCE
Confidence 66 777777777777766666666665 7777777777766666666666777 7777777777644443 566677777
Q ss_pred EEecCCcCCCccCC------CCceEEccCCcceeeccCCcccCCCceeeecCCccceec
Q 039116 161 IDISENKLSDDIPN------SLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDNLCGG 213 (248)
Q Consensus 161 L~l~~n~i~~~~p~------~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~ 213 (248)
|++++|.+++.+|. .|++|++++|++++.+|....+++++.+++++|+++||.
T Consensus 249 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp EECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEEST
T ss_pred EECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCC
Confidence 77777777655553 367777777777777665566777777777777777763
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=5.7e-29 Score=226.84 Aligned_cols=220 Identities=34% Similarity=0.614 Sum_probs=140.5
Q ss_pred CchhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCC
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGN 81 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 81 (248)
+|..++.++ +|++|++++|.+.+..|..+.++++|++|++++|++++..|..+..+++|++|++++|.+.+.+|..++.
T Consensus 458 ~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 536 (768)
T 3rgz_A 458 IPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536 (768)
T ss_dssp CCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred CCHHHcCCC-CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 344555555 5666666666665555666666666666666666666556666666666666666666666566666666
Q ss_pred CCCccEEEcccccccccCCccc----------------------------------------------------------
Q 039116 82 LTLLTTLNFGENMLEESIPSSL---------------------------------------------------------- 103 (248)
Q Consensus 82 l~~L~~L~l~~n~~~~~~~~~l---------------------------------------------------------- 103 (248)
+++|+.|++++|.+++.+|..+
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence 6666666666665554444322
Q ss_pred ------------cCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCc
Q 039116 104 ------------GKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDD 171 (248)
Q Consensus 104 ------------~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 171 (248)
..+++|+.|++++|++++.+|..++.++.+ +.|++++|.+++..|..++.+++|+.|++++|++++.
T Consensus 617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L-~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL-FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695 (768)
T ss_dssp SCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC-CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEC
T ss_pred cceecccCchhhhccccccEEECcCCcccccCCHHHhccccC-CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCc
Confidence 223456667777777766677777777777 7777777777777777777777777777777777766
Q ss_pred cCC------CCceEEccCCcceeeccCCcccCCCceeeecCCccceeccCccccCCCCcccc
Q 039116 172 IPN------SLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDNLCGGISELHLSTCSIKES 227 (248)
Q Consensus 172 ~p~------~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~l~~l~~~~c~~~~~ 227 (248)
+|. .|++|++++|+++|.+|....+..+...++.|||.+||.. +..|.-...
T Consensus 696 ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~----l~~C~~~~~ 753 (768)
T 3rgz_A 696 IPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP----LPRCDPSNA 753 (768)
T ss_dssp CCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT----SCCCCSCC-
T ss_pred CChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC----CcCCCCCcc
Confidence 663 3777777777777777766666666666777777777743 136765444
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=3.8e-28 Score=221.41 Aligned_cols=211 Identities=36% Similarity=0.619 Sum_probs=110.3
Q ss_pred chhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCC
Q 039116 3 PEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNL 82 (248)
Q Consensus 3 p~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 82 (248)
|..++.++ +|++|++++|.+.+..|..+..+++|++|++++|++++..|..+.++++|++|++++|++.+..|..++.+
T Consensus 435 p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 513 (768)
T 3rgz_A 435 PSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513 (768)
T ss_dssp CGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC
Confidence 33344443 44444444444444444444444444444444444444444444444445555555554444444444455
Q ss_pred CCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhh---------------------------------
Q 039116 83 TLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIR--------------------------------- 129 (248)
Q Consensus 83 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~--------------------------------- 129 (248)
++|++|++++|.+++..|..+..+++|+.|++.+|.+++.+|..++.
T Consensus 514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence 55555555555554444555555555555555555544444432221
Q ss_pred -------------------------------------ccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCcc
Q 039116 130 -------------------------------------LSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDI 172 (248)
Q Consensus 130 -------------------------------------~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 172 (248)
++.+ ++|++++|.+++..|..++.++.|+.|++++|++++.+
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L-~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM-MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC-CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred cccccccchhhhccccccccccccceecccCchhhhccccc-cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence 1233 45666666666556666666666666666666666655
Q ss_pred CC------CCceEEccCCcceeecc-CCcccCCCceeeecCCccceeccCc
Q 039116 173 PN------SLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNLCGGISE 216 (248)
Q Consensus 173 p~------~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~~~~l~~ 216 (248)
|. .|++|++++|+++|.+| ....++.|+.|++++| .+.|.+|+
T Consensus 673 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N-~l~g~iP~ 722 (768)
T 3rgz_A 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN-NLSGPIPE 722 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS-EEEEECCS
T ss_pred ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC-cccccCCC
Confidence 53 26666666666666655 4455666666666666 45555553
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=4.7e-27 Score=190.26 Aligned_cols=202 Identities=20% Similarity=0.214 Sum_probs=179.3
Q ss_pred cCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCcc-ccccCCcccCCCCCccEE
Q 039116 10 STQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNK-FLGEIPPSIGNLTLLTTL 88 (248)
Q Consensus 10 ~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L 88 (248)
++++++|++++|.+....+..|.++++|++|++++|.+++..+..+.++++|++|++++|. +....+..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4589999999999997777889999999999999999998888999999999999999997 776668889999999999
Q ss_pred EcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcC
Q 039116 89 NFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKL 168 (248)
Q Consensus 89 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i 168 (248)
++++|.+++..+..+..+++|+.|++.+|+++...+..+..++++ ++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-cEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 999999998778889999999999999999985444557888999 9999999999966666789999999999999999
Q ss_pred CCccC------CCCceEEccCCcceeecc-CCcccCCCceeeecCCcccee
Q 039116 169 SDDIP------NSLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNLCG 212 (248)
Q Consensus 169 ~~~~p------~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~~~ 212 (248)
++..| +.|++|++++|++++..+ .+..+++|+.+++++|++.|.
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 87655 359999999999998765 467889999999999998874
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=8.4e-27 Score=192.56 Aligned_cols=198 Identities=19% Similarity=0.247 Sum_probs=164.5
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+++.|++++|.+. .+|..+.++++|++|++++|.++ ..|..+..+++|++|++++|.+. .+|..+..+++|+.|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 7889999999888 77888888899999999999888 77888888889999999999888 678888888999999999
Q ss_pred cccccccCCccccC---------CCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEE
Q 039116 92 ENMLEESIPSSLGK---------CQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVID 162 (248)
Q Consensus 92 ~n~~~~~~~~~l~~---------l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~ 162 (248)
+|...+..|..+.. +++|+.|++.+|+++ .+|..++.++++ ++|++++|.++ ..|..+..+++|+.|+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-~~L~L~~N~l~-~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-KSLKIRNSPLS-ALGPAIHHLPKLEELD 235 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-CEEEEESSCCC-CCCGGGGGCTTCCEEE
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-CEEEccCCCCC-cCchhhccCCCCCEEE
Confidence 88777777776654 888999999999888 788888888888 88999999888 4666788888999999
Q ss_pred ecCCcCCCccCC------CCceEEccCCcceeecc-CCcccCCCceeeecCCccceeccCc
Q 039116 163 ISENKLSDDIPN------SLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNLCGGISE 216 (248)
Q Consensus 163 l~~n~i~~~~p~------~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~~~~l~~ 216 (248)
+++|.+.+.+|. .|++|++++|.+.+.+| .+..+++|+.|++++|+ +.+.+|+
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~-~~~~iP~ 295 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV-NLSRLPS 295 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT-TCCCCCG
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC-chhhccH
Confidence 999888877664 38889999988887777 66778889999999885 4555665
No 7
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2e-26 Score=197.60 Aligned_cols=205 Identities=25% Similarity=0.266 Sum_probs=149.3
Q ss_pred hhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCC
Q 039116 4 EAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLT 83 (248)
Q Consensus 4 ~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 83 (248)
..|.++. +|++|++++|.+....+..|.++++|++|++++|+++...+..|..+++|++|++++|.+....+..+..++
T Consensus 82 ~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 160 (440)
T 3zyj_A 82 NSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160 (440)
T ss_dssp TTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT
T ss_pred HHhhCCC-CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCc
Confidence 3445555 666666666666655556666666666666666666655555566666666666666666655555666666
Q ss_pred CccEEEcccc-cccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEE
Q 039116 84 LLTTLNFGEN-MLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVID 162 (248)
Q Consensus 84 ~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~ 162 (248)
+|+.|++.+| .+....+..+..+++|+.|++.+|+++ .+| .+..++++ ++|++++|.+++..+..+..+++|+.|+
T Consensus 161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKL-DELDLSGNHLSAIRPGSFQGLMHLQKLW 237 (440)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSC-CEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCccc-CEEECCCCccCccChhhhccCccCCEEE
Confidence 7777777663 333333345677788888888888887 555 36677788 8899999998877788888999999999
Q ss_pred ecCCcCCCccC------CCCceEEccCCcceeecc-CCcccCCCceeeecCCcccee
Q 039116 163 ISENKLSDDIP------NSLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNLCG 212 (248)
Q Consensus 163 l~~n~i~~~~p------~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~~~ 212 (248)
+++|++++..+ ..|++|++++|++++..+ .+..+++|+.+++++||+.|.
T Consensus 238 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 99999986544 359999999999997766 567789999999999999885
No 8
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.6e-26 Score=186.36 Aligned_cols=207 Identities=22% Similarity=0.264 Sum_probs=179.6
Q ss_pred CchhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCC
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGN 81 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 81 (248)
+|..+ ++++++|++++|.+++..+..|.++++|++|++++|.++...+..+.++++|++|++++|.+.+..+..+..
T Consensus 22 ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 22 IPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp CCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred cCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 45544 348999999999999776778999999999999999999777888999999999999999999887888999
Q ss_pred CCCccEEEcccccccccCCccccCCCCCcEEEcccCcCcc-ccchhhhhccccccEEEcccCcCCCCCCcCccCCCCcc-
Q 039116 82 LTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSG-TIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLG- 159 (248)
Q Consensus 82 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~- 159 (248)
+++|++|++.+|.+.+..+..+..+++|++|++.+|.++. .+|..+..++++ ++|++++|.+++..+..+..+++|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-EHLDLSSNKIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-CEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-CEEECCCCCCCcCCHHHhhhhhhccc
Confidence 9999999999999998666679999999999999999985 358888999999 9999999999876666776666666
Q ss_pred ---EEEecCCcCCCccCC-----CCceEEccCCcceeecc-CCcccCCCceeeecCCcccee
Q 039116 160 ---VIDISENKLSDDIPN-----SLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNLCG 212 (248)
Q Consensus 160 ---~L~l~~n~i~~~~p~-----~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~~~ 212 (248)
.|++++|.+++..+. .|++|++++|++++..+ .+..+++|+.+++++||+.|.
T Consensus 178 l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 899999999854332 59999999999997766 457899999999999998885
No 9
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.8e-26 Score=197.26 Aligned_cols=198 Identities=23% Similarity=0.244 Sum_probs=128.8
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+++.|++++|.+.+..+..|.++++|+.|++++|.+++..+..|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 45555555555554444555555555555555555554444455555555555555555544433444445555555555
Q ss_pred cccccccC-------------------------CccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCC
Q 039116 92 ENMLEESI-------------------------PSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNG 146 (248)
Q Consensus 92 ~n~~~~~~-------------------------~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~ 146 (248)
+|.++... +..+..+++|+.|++.+|+++ .+| .+..++++ ++|++++|.+++
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L-~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGL-EELEMSGNHFPE 232 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTC-CEEECTTSCCSE
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccc-cEEECcCCcCcc
Confidence 55444322 234556667777777777776 344 35666777 788888888887
Q ss_pred CCCcCccCCCCccEEEecCCcCCCccC------CCCceEEccCCcceeecc-CCcccCCCceeeecCCcccee
Q 039116 147 PFPSNFGVLKNLGVIDISENKLSDDIP------NSLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNLCG 212 (248)
Q Consensus 147 ~~~~~~~~~~~L~~L~l~~n~i~~~~p------~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~~~ 212 (248)
..|..+..+++|+.|++++|++++..+ ..|++|++++|++++..+ .+..+++|+.+++++||+.|.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 677788888889999999998876544 348999999999997666 567789999999999998885
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=3.4e-26 Score=185.24 Aligned_cols=207 Identities=23% Similarity=0.221 Sum_probs=179.4
Q ss_pred hhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCc-CCCCCChhhcCCccccEEEecCccccccCCcccCCC
Q 039116 4 EAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQ-FKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNL 82 (248)
Q Consensus 4 ~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 82 (248)
..+..++ +|++|++++|.+.+..+..|.++++|++|++++|. ++...+..+..+++|++|++++|.+.+..+..+..+
T Consensus 50 ~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 128 (285)
T 1ozn_A 50 ASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128 (285)
T ss_dssp TTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred HHcccCC-CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCC
Confidence 4567777 99999999999997778999999999999999997 887778889999999999999999998878889999
Q ss_pred CCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEE
Q 039116 83 TLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVID 162 (248)
Q Consensus 83 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~ 162 (248)
++|++|++++|.++...+..+..+++|+.|++.+|++++..+..+..++.+ ++|++++|.+++..|..+..+++|+.|+
T Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 207 (285)
T 1ozn_A 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL-DRLLLHQNRVAHVHPHAFRDLGRLMTLY 207 (285)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc-CEEECCCCcccccCHhHccCcccccEee
Confidence 999999999999998666778999999999999999984444457788999 9999999999987799999999999999
Q ss_pred ecCCcCCCccC------CCCceEEccCCcceeeccCCcccCCCceeeecCCcccee
Q 039116 163 ISENKLSDDIP------NSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDNLCG 212 (248)
Q Consensus 163 l~~n~i~~~~p------~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~ 212 (248)
+++|.+++..+ +.|++|++++|++.+..+..+....++.+....+...|.
T Consensus 208 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~ 263 (285)
T 1ozn_A 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS 263 (285)
T ss_dssp CCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEE
T ss_pred CCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccC
Confidence 99999986443 359999999999998777545556667777777766665
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=7.6e-26 Score=186.83 Aligned_cols=201 Identities=23% Similarity=0.363 Sum_probs=183.0
Q ss_pred CCchhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccC
Q 039116 1 MLPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIG 80 (248)
Q Consensus 1 ~lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 80 (248)
.+|+.++++. +|++|++++|.+. .+|..++++++|++|++++|.++ ..|..+..+++|++|++++|...+.+|..+.
T Consensus 95 ~lp~~l~~l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 95 QFPDQAFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA 171 (328)
T ss_dssp SCCSCGGGGT-TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred hcChhhhhCC-CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence 3788899988 9999999999999 88999999999999999999999 7788999999999999999888778887765
Q ss_pred C---------CCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcC
Q 039116 81 N---------LTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSN 151 (248)
Q Consensus 81 ~---------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~ 151 (248)
. +++|+.|++++|.++ .+|..+..+++|+.|++.+|.++ .+|..++.++.+ ++|++++|.+.+..|..
T Consensus 172 ~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L-~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL-EELDLRGCTALRNYPPI 248 (328)
T ss_dssp EEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTC-CEEECTTCTTCCBCCCC
T ss_pred hccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCC-CEEECcCCcchhhhHHH
Confidence 4 999999999999998 58888999999999999999998 677788999999 99999999999899999
Q ss_pred ccCCCCccEEEecCCcCCCccCC------CCceEEccCCcceeecc-CCcccCCCceeeecCC
Q 039116 152 FGVLKNLGVIDISENKLSDDIPN------SLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGN 207 (248)
Q Consensus 152 ~~~~~~L~~L~l~~n~i~~~~p~------~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n 207 (248)
++.+++|+.|++++|.+.+.+|. .|++|++++|.+.+.+| ....+++++.+++..+
T Consensus 249 ~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 99999999999999999888874 49999999999988877 6788889999888865
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=9.3e-26 Score=195.16 Aligned_cols=229 Identities=24% Similarity=0.245 Sum_probs=142.9
Q ss_pred hhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCC
Q 039116 4 EAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLT 83 (248)
Q Consensus 4 ~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 83 (248)
..|.+++ +|++|++++|.+.+..|..|.++++|++|++++|.++...+..|.++++|++|++++|.+....+..+..++
T Consensus 50 ~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 50 DEFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp TTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hHccCCC-CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence 4455555 677777777776655566677777777777777777655455566677777777777776666666677777
Q ss_pred CccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEe
Q 039116 84 LLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDI 163 (248)
Q Consensus 84 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 163 (248)
+|+.|++++|.+....+..+..+++|+.|++.+|+++...+..+..++++ +.|++++|.+.+..+..+..+++|+.|++
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL-IVLRLRHLNINAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC-CEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC-cEEeCCCCcCcEeChhhcccCcccceeeC
Confidence 77777777777766566667777777777777777764333446667777 77777777776555556666666666666
Q ss_pred cCCcCCCccC------------------------------CCCceEEccCCcceeecc-CCcccCCCceeeecCCccc--
Q 039116 164 SENKLSDDIP------------------------------NSLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNL-- 210 (248)
Q Consensus 164 ~~n~i~~~~p------------------------------~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~-- 210 (248)
++|...+.+| ..|++|++++|++++..+ .+..+++|+.|++++|.-.
T Consensus 208 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (477)
T 2id5_A 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV 287 (477)
T ss_dssp ECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE
T ss_pred CCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE
Confidence 6554433222 235555666665554444 3455556666666665211
Q ss_pred -------eeccCccccCCCCccccccccccc
Q 039116 211 -------CGGISELHLSTCSIKESKQSRARS 234 (248)
Q Consensus 211 -------~~~l~~l~~~~c~~~~~~~~~~~~ 234 (248)
+..+..+++++|.+.......+..
T Consensus 288 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 318 (477)
T 2id5_A 288 EPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318 (477)
T ss_dssp CTTTBTTCTTCCEEECCSSCCSCCCGGGBSC
T ss_pred CHHHhcCcccCCEEECCCCcCceeCHhHcCC
Confidence 124455666666666655544433
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=6.6e-26 Score=185.27 Aligned_cols=203 Identities=24% Similarity=0.282 Sum_probs=144.6
Q ss_pred hcccCCccEEEccccccccC--chhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCC-cccCCCC
Q 039116 7 GSLSTQLKILSVENNQFFGN--IPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIP-PSIGNLT 83 (248)
Q Consensus 7 ~~~~~~L~~L~l~~~~i~~~--~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~ 83 (248)
.+++ +|++|++++|.+... .+..+.++++|++|++++|.++ ..+..+..+++|++|++++|.+....+ ..+..++
T Consensus 49 ~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 126 (306)
T 2z66_A 49 DKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126 (306)
T ss_dssp TTCT-TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT
T ss_pred hccc-cCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhcc
Confidence 4454 666666666666522 2455556666666666666666 345556677777777777777764443 4677778
Q ss_pred CccEEEcccccccccCCccccCCCCCcEEEcccCcCcc-ccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEE
Q 039116 84 LLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSG-TIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVID 162 (248)
Q Consensus 84 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~ 162 (248)
+|++|++++|.+....+..+..+++|+.|++.+|.+++ ..|..+..++++ ++|++++|.+++..|..+..+++|+.|+
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-TFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC-CEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 88888888888777667777778888888888887764 356667777788 8888888888766677778888888888
Q ss_pred ecCCcCCCccC------CCCceEEccCCcceeecc-CCccc-CCCceeeecCCcccee
Q 039116 163 ISENKLSDDIP------NSLENLNLSFNHFEGEVP-IKGVF-NNSSAISLDGNDNLCG 212 (248)
Q Consensus 163 l~~n~i~~~~p------~~L~~L~l~~n~l~~~~~-~~~~~-~~l~~l~l~~n~~~~~ 212 (248)
+++|.+++..+ +.|++|++++|++++..+ ....+ ++|+.+++++|+..|.
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 88888875433 358888888888887666 44555 4788888888877663
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=7.4e-26 Score=194.51 Aligned_cols=117 Identities=27% Similarity=0.330 Sum_probs=65.9
Q ss_pred chhhhcccCCccEEEccccccccCc-hhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcc--c
Q 039116 3 PEAVGSLSTQLKILSVENNQFFGNI-PSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPS--I 79 (248)
Q Consensus 3 p~~~~~~~~~L~~L~l~~~~i~~~~-p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--l 79 (248)
|..++++. +|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+.++++|++|++++|.+.+..+.. +
T Consensus 47 ~~~~~~l~-~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 125 (455)
T 3v47_A 47 ETSFSRLQ-DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125 (455)
T ss_dssp TTTTSSCT-TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTT
T ss_pred hhHhccCc-cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccc
Confidence 44555555 6666666666654333 445666666666666666666555556666666666666666655422222 5
Q ss_pred CCCCCccEEEcccccccccCCcc-ccCCCCCcEEEcccCcCc
Q 039116 80 GNLTLLTTLNFGENMLEESIPSS-LGKCQNIALLDLSNNNLS 120 (248)
Q Consensus 80 ~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~i~ 120 (248)
..+++|++|++++|.+++..|.. +..+++|+.|++.+|.++
T Consensus 126 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred cCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 55566666666666655544443 455555555555555544
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=2.4e-25 Score=191.31 Aligned_cols=111 Identities=25% Similarity=0.267 Sum_probs=62.7
Q ss_pred CccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCccC------
Q 039116 100 PSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIP------ 173 (248)
Q Consensus 100 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p------ 173 (248)
+..+..+++|+.|++.+|.+++..+..+..++.+ ++|++++|.+++..+..+..+++|+.|++++|++++..|
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL-LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC-CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccC-CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence 3344445555555555555554444445555555 566666666654445555566666666666666654333
Q ss_pred CCCceEEccCCcceeecc-CCcccCCCceeeecCCccce
Q 039116 174 NSLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNLC 211 (248)
Q Consensus 174 ~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~~ 211 (248)
+.|++|++++|++++..+ .+..+++|+.+++++|+..|
T Consensus 371 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 236666666666665444 34556666666666666555
No 16
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.4e-24 Score=174.54 Aligned_cols=197 Identities=23% Similarity=0.248 Sum_probs=170.3
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
..+.++++++.++ .+|..+. +++++|++++|+++...+.+|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 6789999999998 5676554 679999999999997777789999999999999999986666677899999999999
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCc
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDD 171 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 171 (248)
+|.++...+..+..+++|+.|++.+|.++...+..+..++++ ++|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC-CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 999998666778899999999999999985555567888999 9999999999976666788999999999999999864
Q ss_pred cC------CCCceEEccCCcceeecc-CCcccCCCceeeecCCcccee
Q 039116 172 IP------NSLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNLCG 212 (248)
Q Consensus 172 ~p------~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~~~ 212 (248)
.+ ..|++|++++|++++..+ .+..+++|+.+++++||+.|.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 43 349999999999997766 467789999999999998885
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.7e-24 Score=182.76 Aligned_cols=221 Identities=24% Similarity=0.219 Sum_probs=141.0
Q ss_pred Cchhh-hcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccC
Q 039116 2 LPEAV-GSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIG 80 (248)
Q Consensus 2 lp~~~-~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 80 (248)
+|+.+ ..++ +|++|++++|.+....+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+....+..+.
T Consensus 60 l~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 138 (390)
T 3o6n_A 60 LPAALLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 138 (390)
T ss_dssp ECTHHHHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CChhHhcccc-cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhc
Confidence 45443 4566 888888888888766666788888888888888888877777788888888888888888744444567
Q ss_pred CCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhcccc---------------------------
Q 039116 81 NLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSL--------------------------- 133 (248)
Q Consensus 81 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~l--------------------------- 133 (248)
.+++|++|++++|.++...+..+..+++|+.|++.+|.+++. + +..++.+
T Consensus 139 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n 215 (390)
T 3o6n_A 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN 215 (390)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSS
T ss_pred CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--cccccccceeecccccccccCCCCcceEEECCCC
Confidence 888888888888888876667778888888888888877632 1 1112221
Q ss_pred ------------ccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCccC------CCCceEEccCCcceeeccCCcc
Q 039116 134 ------------SIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIP------NSLENLNLSFNHFEGEVPIKGV 195 (248)
Q Consensus 134 ------------l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p------~~L~~L~l~~n~l~~~~~~~~~ 195 (248)
+++|++++|.+++. ..+..+++|+.|++++|.+++..| +.|++|++++|++++.......
T Consensus 216 ~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (390)
T 3o6n_A 216 SINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP 293 (390)
T ss_dssp CCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSC
T ss_pred eeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCC
Confidence 03344444444321 234455666666666666654333 2366666666666655444455
Q ss_pred cCCCceeeecCCccce--------eccCccccCCCCccccc
Q 039116 196 FNNSSAISLDGNDNLC--------GGISELHLSTCSIKESK 228 (248)
Q Consensus 196 ~~~l~~l~l~~n~~~~--------~~l~~l~~~~c~~~~~~ 228 (248)
+++|+.|++++|.-.. ..+..+++++|.+....
T Consensus 294 l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 294 IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp CTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC
Confidence 6666666666663210 13445555555554443
No 18
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.5e-25 Score=182.45 Aligned_cols=197 Identities=23% Similarity=0.303 Sum_probs=165.4
Q ss_pred cccCCccEEEccccccccCchhhh--hcCcCCcEEEcCCCcCCCCCChhhcCC-----ccccEEEecCccccccCCcccC
Q 039116 8 SLSTQLKILSVENNQFFGNIPSGL--RNLVNLELLHLGDNQFKGQIPGTIGDL-----LKLQRLTLQGNKFLGEIPPSIG 80 (248)
Q Consensus 8 ~~~~~L~~L~l~~~~i~~~~p~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~l~ 80 (248)
++. +|++|++++|.+.+..|..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|.+.+..+..++
T Consensus 93 ~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GIS-GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTS-CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcC-CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 576 99999999999998888876 8899999999999999976 8777777 8999999999999988888999
Q ss_pred CCCCccEEEccccccccc--CCccc--cCCCCCcEEEcccCcCcc--ccc-hhhhhccccccEEEcccCcCCCCCC-cCc
Q 039116 81 NLTLLTTLNFGENMLEES--IPSSL--GKCQNIALLDLSNNNLSG--TIP-TEVIRLSSLSIYLDLSQNQLNGPFP-SNF 152 (248)
Q Consensus 81 ~l~~L~~L~l~~n~~~~~--~~~~l--~~l~~L~~L~l~~n~i~~--~~~-~~~~~~~~ll~~L~l~~n~i~~~~~-~~~ 152 (248)
.+++|++|++++|.+.+. .+..+ ..+++|+.|++.+|++++ ..+ ..+..++++ ++|++++|.+++..| ..+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL-QGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC-SEEECTTSCCCSSCCCSCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC-CEEECCCCcCCcccchhhh
Confidence 999999999999997653 23333 788999999999999972 222 223456888 999999999997664 455
Q ss_pred cCCCCccEEEecCCcCCCccCC----CCceEEccCCcceeeccCCcccCCCceeeecCCcc
Q 039116 153 GVLKNLGVIDISENKLSDDIPN----SLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDN 209 (248)
Q Consensus 153 ~~~~~L~~L~l~~n~i~~~~p~----~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~ 209 (248)
..+++|+.|++++|.++ .+|. .|++|++++|++++. |.+..+++|+.+++++|+.
T Consensus 250 ~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CCCTTCCEEECTTSCCS-SCCSSCCSEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTT
T ss_pred hhcCCCCEEECCCCccC-hhhhhccCCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCC
Confidence 67899999999999998 5553 589999999999987 4478899999999999963
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=5.3e-26 Score=203.21 Aligned_cols=163 Identities=24% Similarity=0.379 Sum_probs=96.9
Q ss_pred CchhhhcccCCccEEEccccccccC-----------------chhhhh--cCcCCcEEEcCCCcCCCCCChhhcCCcccc
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGN-----------------IPSGLR--NLVNLELLHLGDNQFKGQIPGTIGDLLKLQ 62 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~-----------------~p~~~~--~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 62 (248)
||+.++++. +|++|++++|.+.+. +|+.++ ++++|++|++++|.+.+..|..+.++++|+
T Consensus 198 ip~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLT-KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhccc-CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 466666666 677777777776653 666666 677777777777766666666666666777
Q ss_pred EEEecCcc-ccc-cCCcccCCC------CCccEEEcccccccccCCc--cccCCCCCcEEEcccCcCccccchhhhhccc
Q 039116 63 RLTLQGNK-FLG-EIPPSIGNL------TLLTTLNFGENMLEESIPS--SLGKCQNIALLDLSNNNLSGTIPTEVIRLSS 132 (248)
Q Consensus 63 ~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ 132 (248)
+|++++|. +++ .+|..++.+ ++|+.|++++|.++ .+|. .+..+++|+.|++.+|.+++.+| .++.+++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 77777666 554 455544443 56666666666665 3555 55566666666666665554454 4444455
Q ss_pred cccEEEcccCcCCCCCCcCccCCCC-ccEEEecCCcCC
Q 039116 133 LSIYLDLSQNQLNGPFPSNFGVLKN-LGVIDISENKLS 169 (248)
Q Consensus 133 ll~~L~l~~n~i~~~~~~~~~~~~~-L~~L~l~~n~i~ 169 (248)
+ ++|++++|.++ .+|..+..+++ |+.|++++|.++
T Consensus 355 L-~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 355 L-ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp E-SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS
T ss_pred C-CEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc
Confidence 5 55555555554 44444444444 555555555544
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.6e-24 Score=187.37 Aligned_cols=221 Identities=19% Similarity=0.199 Sum_probs=164.5
Q ss_pred chhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCC
Q 039116 3 PEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNL 82 (248)
Q Consensus 3 p~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 82 (248)
|..|.+++ +|++|++++|.+....+..|.++++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+
T Consensus 73 ~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 151 (477)
T 2id5_A 73 PGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151 (477)
T ss_dssp TTTTTTCT-TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTC
T ss_pred hhhhhCCc-cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCC
Confidence 56677777 89999998888885555667888888888888888887777788888888888888888877777778888
Q ss_pred CCccEEEcccccccccCCccccCCCCCcEEEcccCcCccc------------------------cchhhhhccccccEEE
Q 039116 83 TLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGT------------------------IPTEVIRLSSLSIYLD 138 (248)
Q Consensus 83 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~------------------------~~~~~~~~~~ll~~L~ 138 (248)
++|+.|++.+|.++...+..+..+++|+.|++.+|.+.+. ++.......++ ++|+
T Consensus 152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~ 230 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL-TSLS 230 (477)
T ss_dssp TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC-SEEE
T ss_pred CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc-cEEE
Confidence 8888888888877764445566666666666666665532 22222233355 6777
Q ss_pred cccCcCCCCCCcCccCCCCccEEEecCCcCCCccC------CCCceEEccCCcceeecc-CCcccCCCceeeecCCccc-
Q 039116 139 LSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIP------NSLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNL- 210 (248)
Q Consensus 139 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p------~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~- 210 (248)
+++|.+++..+..+..+++|+.|++++|.+++..+ ..|++|++++|++++..+ .+..+++|+.|++++|.-.
T Consensus 231 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp EESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred CcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 77777774433567889999999999999985443 349999999999998866 6778899999999998321
Q ss_pred --------eeccCccccCCCCcc
Q 039116 211 --------CGGISELHLSTCSIK 225 (248)
Q Consensus 211 --------~~~l~~l~~~~c~~~ 225 (248)
+..+..++++++++.
T Consensus 311 ~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 311 LEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCGGGBSCGGGCCEEECCSSCEE
T ss_pred eCHhHcCCCcccCEEEccCCCcc
Confidence 125566777766653
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=1.2e-24 Score=193.24 Aligned_cols=225 Identities=25% Similarity=0.274 Sum_probs=130.6
Q ss_pred CchhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCC-hhhcCCccccEEEecCccccccC--Ccc
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIP-GTIGDLLKLQRLTLQGNKFLGEI--PPS 78 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~ 78 (248)
+|+.++.++ +|++|++++|.+.+..|..+.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.. +..
T Consensus 293 lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 293 LPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp CCSSCCSCT-TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred CChhhcccc-cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 344444444 55555555555544444445555555555555555443222 23455555555555555554333 445
Q ss_pred cCCCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchh-hhhccccccEEEcccCcCCCCCCcCccCCCC
Q 039116 79 IGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTE-VIRLSSLSIYLDLSQNQLNGPFPSNFGVLKN 157 (248)
Q Consensus 79 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~ 157 (248)
+..+++|++|++++|.+.+..+..+..+++|+.|++.+|.+++..+.. +..++.+ ++|++++|.+++..+..++.+++
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL-KVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC-CEEECTTCCCBTTCTTTTTTCTT
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC-CEEECCCCccCCcCHHHHhCCCC
Confidence 556666666666666666555556666666666666666665433322 5566666 67777777776666666677777
Q ss_pred ccEEEecCCcCCCc-cC--------CCCceEEccCCcceeecc-CCcccCCCceeeecCCcccee----------ccCcc
Q 039116 158 LGVIDISENKLSDD-IP--------NSLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNLCG----------GISEL 217 (248)
Q Consensus 158 L~~L~l~~n~i~~~-~p--------~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~~~----------~l~~l 217 (248)
|+.|++++|++++. ++ ..|++|++++|++++..+ .+..+++|+.|++++|. +.+ .+ .+
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L 528 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR-LTSSSIEALSHLKGI-YL 528 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCGGGGGGGTTCCSC-EE
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc-cCcCChhHhCccccc-EE
Confidence 77777777776541 11 247777777777776654 55667777777777773 322 22 45
Q ss_pred ccCCCCccccccc
Q 039116 218 HLSTCSIKESKQS 230 (248)
Q Consensus 218 ~~~~c~~~~~~~~ 230 (248)
++++|.+....+.
T Consensus 529 ~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 529 NLASNHISIILPS 541 (606)
T ss_dssp ECCSSCCCCCCGG
T ss_pred ECcCCcccccCHh
Confidence 5566666555443
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-24 Score=191.47 Aligned_cols=220 Identities=23% Similarity=0.215 Sum_probs=144.6
Q ss_pred Cchhh-hcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccC
Q 039116 2 LPEAV-GSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIG 80 (248)
Q Consensus 2 lp~~~-~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 80 (248)
+|+.+ ..++ +|+.|++++|.+.+..+..|+++++|+.|++++|.+++..|..|.++++|++|++++|.+....+..++
T Consensus 66 lp~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 144 (597)
T 3oja_B 66 LPAALLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 144 (597)
T ss_dssp ECTHHHHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCHHHHccCC-CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhc
Confidence 45443 4566 888888888888876677888888888888888888877777788888888888888888855555578
Q ss_pred CCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhcccc---------------------------
Q 039116 81 NLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSL--------------------------- 133 (248)
Q Consensus 81 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~l--------------------------- 133 (248)
.+++|++|++++|.+++..+..+..+++|+.|++.+|.+++. + ++.++.+
T Consensus 145 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n 221 (597)
T 3oja_B 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN 221 (597)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSS
T ss_pred cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCccccccCCchhheeeccCC
Confidence 888888888888888877777788888888888888877632 2 1112221
Q ss_pred ------------ccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCccC------CCCceEEccCCcceeeccCCcc
Q 039116 134 ------------SIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIP------NSLENLNLSFNHFEGEVPIKGV 195 (248)
Q Consensus 134 ------------l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p------~~L~~L~l~~n~l~~~~~~~~~ 195 (248)
++.|++++|.+++ +..+..+++|+.|++++|.+++..| ..|++|++++|.+++.......
T Consensus 222 ~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 299 (597)
T 3oja_B 222 SINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP 299 (597)
T ss_dssp CCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSC
T ss_pred cccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCccccc
Confidence 1334444444432 2344556666666666666654433 2366666666666655444455
Q ss_pred cCCCceeeecCCccce--------eccCccccCCCCcccc
Q 039116 196 FNNSSAISLDGNDNLC--------GGISELHLSTCSIKES 227 (248)
Q Consensus 196 ~~~l~~l~l~~n~~~~--------~~l~~l~~~~c~~~~~ 227 (248)
+++|+.|++++|.-.. ..+..|++++|.+...
T Consensus 300 l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 300 IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp CTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred CCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc
Confidence 6666666666663211 1334555555555444
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.8e-24 Score=175.56 Aligned_cols=199 Identities=22% Similarity=0.216 Sum_probs=170.5
Q ss_pred hhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCc
Q 039116 6 VGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLL 85 (248)
Q Consensus 6 ~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 85 (248)
+.+++ ++++++++++.++ .+|..+. +.++.|++++|.+++..+..+.++++|++|++++|.+....+ .+.+++|
T Consensus 6 ~~~l~-~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 6 VSKVA-SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EECST-TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred ccccC-CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 45566 8999999999998 6666554 689999999999998888899999999999999999885533 2789999
Q ss_pred cEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecC
Q 039116 86 TTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISE 165 (248)
Q Consensus 86 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 165 (248)
++|++++|.++. +|..+..+++|+.|++.+|++++..+..+..++++ ++|++++|.+++..+..+..+++|+.|++++
T Consensus 80 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC-CEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 999999999984 78888899999999999999985555667888999 9999999999977777788999999999999
Q ss_pred CcCCCccC------CCCceEEccCCcceeeccCCcccCCCceeeecCCcccee
Q 039116 166 NKLSDDIP------NSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDNLCG 212 (248)
Q Consensus 166 n~i~~~~p------~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~ 212 (248)
|++++..+ ..|+.|++++|+++..+......+.++.+++.+||+.|.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence 99985333 349999999999997666666677899999999999885
No 24
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=3.5e-25 Score=184.57 Aligned_cols=156 Identities=21% Similarity=0.196 Sum_probs=87.9
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+|++|++++|.++...+..|.++++|++|++++|.+++..+..+.++++|++|++++|.++...+..++.+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 56666666666664444456666666666666666665555556666666666666666654333335566666666666
Q ss_pred cccccccCC-ccccCCCCCcEEEcccCc-CccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcC
Q 039116 92 ENMLEESIP-SSLGKCQNIALLDLSNNN-LSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKL 168 (248)
Q Consensus 92 ~n~~~~~~~-~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i 168 (248)
+|.++.... ..+..+++|+.|++.+|. +....+..+..++.+ ++|++++|.+++..|..+..+++|+.|++++|.+
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL-EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE-EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC-CEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 666654222 245556666666666652 443333445555555 5666666665544455555544444444444443
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.4e-25 Score=200.58 Aligned_cols=201 Identities=21% Similarity=0.343 Sum_probs=165.0
Q ss_pred chhhhhcCcCCcEEEcCCCcCCCC-----------------CChhhc--CCccccEEEecCccccccCCcccCCCCCccE
Q 039116 27 IPSGLRNLVNLELLHLGDNQFKGQ-----------------IPGTIG--DLLKLQRLTLQGNKFLGEIPPSIGNLTLLTT 87 (248)
Q Consensus 27 ~p~~~~~l~~L~~L~l~~~~i~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 87 (248)
+|+.|+++++|++|++++|.+++. .|..+. ++++|++|++++|.+.+.+|..++.+++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 778899999999999999999974 888888 9999999999999998899999999999999
Q ss_pred EEccccc-ccc-cCCccccCC------CCCcEEEcccCcCccccch--hhhhccccccEEEcccCcCCCCCCcCccCCCC
Q 039116 88 LNFGENM-LEE-SIPSSLGKC------QNIALLDLSNNNLSGTIPT--EVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKN 157 (248)
Q Consensus 88 L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~i~~~~~~--~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~ 157 (248)
|++++|. +++ .+|..+..+ ++|+.|++.+|+++ .+|. .++.++++ ++|++++|.+++.+| .++.+++
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L-~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKL-GMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTC-CEEECCSCCCEEECC-CCEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCC-CEEeCcCCcCccchh-hhCCCCC
Confidence 9999998 887 678777765 89999999999998 8888 88899999 999999999987788 8888999
Q ss_pred ccEEEecCCcCCCccCC------C-CceEEccCCcceeeccCCcc--cCCCceeeecCCcccee----------------
Q 039116 158 LGVIDISENKLSDDIPN------S-LENLNLSFNHFEGEVPIKGV--FNNSSAISLDGNDNLCG---------------- 212 (248)
Q Consensus 158 L~~L~l~~n~i~~~~p~------~-L~~L~l~~n~l~~~~~~~~~--~~~l~~l~l~~n~~~~~---------------- 212 (248)
|+.|++++|+++ .+|. . |++|++++|+++..+..+.. +++|+.|++++|.- .+
T Consensus 355 L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 355 LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI-GSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCT-TTTTTCSSCTTCSSCCCC
T ss_pred CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcC-CCcchhhhcccccccccC
Confidence 999999999988 5553 4 89999999999844333333 33788888888742 21
Q ss_pred -ccCccccCCCCccccccccc
Q 039116 213 -GISELHLSTCSIKESKQSRA 232 (248)
Q Consensus 213 -~l~~l~~~~c~~~~~~~~~~ 232 (248)
.+..+++++|.+...+...+
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~ 453 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELF 453 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHH
T ss_pred CCCCEEECcCCccCcCCHHHH
Confidence 45566677777665554433
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=3.2e-24 Score=183.81 Aligned_cols=201 Identities=24% Similarity=0.292 Sum_probs=174.0
Q ss_pred CchhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCC
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGN 81 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 81 (248)
+|..+. ++++.|++++|.+....+..|.++++|+.|++++|.++...+.+|.++++|++|++++|.++...+..+..
T Consensus 58 iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 58 VPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp CCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred CCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 455443 48999999999999877889999999999999999999888889999999999999999999776778999
Q ss_pred CCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccc-hhhhhccccccEEEcccCcCCCCCCcCccCCCCccE
Q 039116 82 LTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIP-TEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGV 160 (248)
Q Consensus 82 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~ 160 (248)
+++|++|++++|.++...+..+..+++|+.|++.+|+....++ ..+..+++| ++|++++|.++ .+| .+..+++|+.
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~-~~~-~~~~l~~L~~ 211 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL-RYLNLAMCNLR-EIP-NLTPLIKLDE 211 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC-CEEECTTSCCS-SCC-CCTTCSSCCE
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc-CeecCCCCcCc-ccc-ccCCCcccCE
Confidence 9999999999999998777789999999999999854333444 357788999 99999999998 455 4788999999
Q ss_pred EEecCCcCCCccCC------CCceEEccCCcceeecc-CCcccCCCceeeecCCc
Q 039116 161 IDISENKLSDDIPN------SLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGND 208 (248)
Q Consensus 161 L~l~~n~i~~~~p~------~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~ 208 (248)
|++++|.+++..|. .|++|++++|++++..+ .+..+++|+.|++++|.
T Consensus 212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 99999999865553 49999999999998876 67788999999999994
No 27
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=2.7e-24 Score=184.93 Aligned_cols=216 Identities=22% Similarity=0.228 Sum_probs=159.8
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
..+.++.++..++ .+|..+. ++++.|++++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4568888888887 6776554 689999999999998889999999999999999999998888899999999999999
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccC-cCCCCCCcCccCCCCccEEEecCCcCCC
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQN-QLNGPFPSNFGVLKNLGVIDISENKLSD 170 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 170 (248)
+|.++...+..+..+++|+.|++.+|.++...+..+..++++ ++|++++| .+....+..+..+++|+.|++++|.+++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL-MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC-CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc-cEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 999998667779999999999999999984444456677777 77887774 4443334456677777777777777764
Q ss_pred ccC-----CCCceEEccCCcceeecc-CCcccCCCceeeecCCccc---------eeccCccccCCCCccccccccc
Q 039116 171 DIP-----NSLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNL---------CGGISELHLSTCSIKESKQSRA 232 (248)
Q Consensus 171 ~~p-----~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~---------~~~l~~l~~~~c~~~~~~~~~~ 232 (248)
+| ..|++|++++|++++..+ .+..+++|+.|++++|.-. +..+..+++++|.+.......+
T Consensus 211 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 211 -MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp -CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred -cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence 23 246777777777766544 4555666666666665321 1144455566666555544433
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=8.8e-25 Score=178.60 Aligned_cols=213 Identities=23% Similarity=0.243 Sum_probs=179.0
Q ss_pred CCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCC--CChhhcCCccccEEEecCccccccCCcccCCCCCccEE
Q 039116 11 TQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQ--IPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTL 88 (248)
Q Consensus 11 ~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 88 (248)
+++++|++++|.+....+..|.++++|++|++++|.++.. .+..+..+++|++|++++|.+. .++..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 4899999999999855455689999999999999999843 3677778999999999999988 566778899999999
Q ss_pred EcccccccccCC-ccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCC-CCCcCccCCCCccEEEecCC
Q 039116 89 NFGENMLEESIP-SSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNG-PFPSNFGVLKNLGVIDISEN 166 (248)
Q Consensus 89 ~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n 166 (248)
++++|.+++..+ ..+..+++|+.|++.+|.+.+..+..+..++.+ ++|++++|.+++ ..|..+..+++|+.|++++|
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC-CEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 999999987544 578899999999999999987777778888999 999999999985 47888999999999999999
Q ss_pred cCCCccC------CCCceEEccCCcceeecc-CCcccCCCceeeecCCccce----------eccCccccCCCCcc
Q 039116 167 KLSDDIP------NSLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNLC----------GGISELHLSTCSIK 225 (248)
Q Consensus 167 ~i~~~~p------~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~~----------~~l~~l~~~~c~~~ 225 (248)
.+++..| +.|++|++++|++++..+ .+..+++|+.|++++|.-.. ..+..++++++++.
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 9986544 349999999999998766 56778999999999995321 14556777776653
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=1e-24 Score=193.83 Aligned_cols=204 Identities=24% Similarity=0.279 Sum_probs=151.6
Q ss_pred hhcccCCccEEEccccccccCc--hhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCc-ccCCC
Q 039116 6 VGSLSTQLKILSVENNQFFGNI--PSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPP-SIGNL 82 (248)
Q Consensus 6 ~~~~~~~L~~L~l~~~~i~~~~--p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l 82 (248)
+..++ +|++|++++|.+.+.. +..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+
T Consensus 346 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 346 LENLE-NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp TTTCT-TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred hhccC-cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence 44455 6666666666665443 55666777777777777777766667777777777777777777655443 36777
Q ss_pred CCccEEEcccccccccCCccccCCCCCcEEEcccCcCccc---cchhhhhccccccEEEcccCcCCCCCCcCccCCCCcc
Q 039116 83 TLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGT---IPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLG 159 (248)
Q Consensus 83 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~---~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~ 159 (248)
++|+.|++++|.+.+..+..+..+++|+.|++.+|.+++. .+..+..++.+ ++|++++|.+++..|..+..+++|+
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL-EILVLSFCDLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC-CEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc-cEEECCCCccCccChhhhccccCCC
Confidence 8888888888887776677777888888888888887642 22456777888 8888888888877778888888899
Q ss_pred EEEecCCcCCCccCC------CCceEEccCCcceeecc-CCcccCCCceeeecCCcccee
Q 039116 160 VIDISENKLSDDIPN------SLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNLCG 212 (248)
Q Consensus 160 ~L~l~~n~i~~~~p~------~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~~~ 212 (248)
.|++++|++++..|. .+ +|++++|++++.++ .+..+++++.+++++||+.|.
T Consensus 504 ~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp EEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred EEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 999999988876553 36 88889999887766 456778899999999998874
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=6.3e-24 Score=175.32 Aligned_cols=194 Identities=23% Similarity=0.268 Sum_probs=106.7
Q ss_pred CCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEc
Q 039116 11 TQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNF 90 (248)
Q Consensus 11 ~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 90 (248)
++++.|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|.+. .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 36777777777777555556777777777777777777666777777777777777777766 3333322 45555555
Q ss_pred ccccccccCCccccCCCCCcEEEcccCcCcc--ccchhhhhcccc--------------------ccEEEcccCcCCCCC
Q 039116 91 GENMLEESIPSSLGKCQNIALLDLSNNNLSG--TIPTEVIRLSSL--------------------SIYLDLSQNQLNGPF 148 (248)
Q Consensus 91 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~--~~~~~~~~~~~l--------------------l~~L~l~~n~i~~~~ 148 (248)
++|.+++..+..+..+++|+.|++.+|.+.. ..+..+..++++ +++|++++|.+++..
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD 208 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEEC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccC
Confidence 5555554434445555555555555555431 223334444444 044444444444333
Q ss_pred CcCccCCCCccEEEecCCcCCCccC------CCCceEEccCCcceeeccCCcccCCCceeeecCC
Q 039116 149 PSNFGVLKNLGVIDISENKLSDDIP------NSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGN 207 (248)
Q Consensus 149 ~~~~~~~~~L~~L~l~~n~i~~~~p------~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n 207 (248)
+..+..+++|+.|++++|.+++..+ +.|++|++++|+++..+.....+++|+.+++++|
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC
Confidence 4444455555555555555543222 1255555555555533333444455555555554
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=6.2e-24 Score=179.23 Aligned_cols=200 Identities=24% Similarity=0.231 Sum_probs=124.8
Q ss_pred hhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCC
Q 039116 4 EAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLT 83 (248)
Q Consensus 4 ~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 83 (248)
..+..+. +|++|++++|.+.+..|..|+++++|++|++++|.++...+..|.++++|++|++++|.+.+..+..+..++
T Consensus 87 ~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 165 (390)
T 3o6n_A 87 YAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165 (390)
T ss_dssp TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT
T ss_pred hhccCCC-CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCC
Confidence 4667777 899999999999877778888999999999999999855555568889999999999998877777788888
Q ss_pred CccEEEcccccccccCCccccCC-------------------------------------CCCcEEEcccCcCccccchh
Q 039116 84 LLTTLNFGENMLEESIPSSLGKC-------------------------------------QNIALLDLSNNNLSGTIPTE 126 (248)
Q Consensus 84 ~L~~L~l~~n~~~~~~~~~l~~l-------------------------------------~~L~~L~l~~n~i~~~~~~~ 126 (248)
+|++|++++|.++......+..+ ++|+.|++.+|.+++ . ..
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~-~-~~ 243 (390)
T 3o6n_A 166 SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-T-AW 243 (390)
T ss_dssp TCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC-C-GG
T ss_pred CCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc-c-HH
Confidence 89999988888764321111111 123334444444431 1 23
Q ss_pred hhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCcc-----CCCCceEEccCCcceeeccCCcccCCCce
Q 039116 127 VIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDI-----PNSLENLNLSFNHFEGEVPIKGVFNNSSA 201 (248)
Q Consensus 127 ~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~-----p~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 201 (248)
+..++.+ ++|++++|.+++..|..+..+++|+.|++++|++++.. .+.|++|++++|++++..+....+++|+.
T Consensus 244 l~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~ 322 (390)
T 3o6n_A 244 LLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLEN 322 (390)
T ss_dssp GGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSE
T ss_pred HcCCCCc-cEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCE
Confidence 4455555 55666666555444555555555555555555554311 12355555555555443333333444444
Q ss_pred eeecCC
Q 039116 202 ISLDGN 207 (248)
Q Consensus 202 l~l~~n 207 (248)
|++++|
T Consensus 323 L~L~~N 328 (390)
T 3o6n_A 323 LYLDHN 328 (390)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 444444
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=1e-23 Score=174.12 Aligned_cols=189 Identities=23% Similarity=0.330 Sum_probs=148.5
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+++.++++++.+. .+|..+. +.++.|++++|.+++..+..+.++++|++|++++|.+.+..|..++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 7999999999988 6676554 789999999999998777789999999999999999998889999999999999999
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCC--CCCcCccCCCCccEEEecCCcCC
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNG--PFPSNFGVLKNLGVIDISENKLS 169 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~~n~i~ 169 (248)
+|.++. +|..+. ++|++|++.+|.+++..+..+..++.+ ++|++++|.++. ..+..+..+++|+.|++++|.++
T Consensus 109 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQM-IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTC-CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccc-cEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 999985 555443 789999999999986556667889999 999999999863 45667778888888888888876
Q ss_pred Cc---cCCCCceEEccCCcceeecc-CCcccCCCceeeecCC
Q 039116 170 DD---IPNSLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGN 207 (248)
Q Consensus 170 ~~---~p~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n 207 (248)
+. .+..|++|++++|++++..+ .+..+++|+.|++++|
T Consensus 185 ~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 185 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 31 11345666666666555433 3444455555555554
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=1.3e-24 Score=193.12 Aligned_cols=204 Identities=22% Similarity=0.192 Sum_probs=176.5
Q ss_pred hhcccCCccEEEccccccccC--chhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCC-cccCCC
Q 039116 6 VGSLSTQLKILSVENNQFFGN--IPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIP-PSIGNL 82 (248)
Q Consensus 6 ~~~~~~~L~~L~l~~~~i~~~--~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l 82 (248)
++.++ +|++|++++|.+.+. .+..+.++++|++|++++|.+++ .|..+..+++|+.|++++|.+.+..+ ..+..+
T Consensus 346 ~~~l~-~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 346 KVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCCCT-TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred hccCC-CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 34556 888999999888754 37888999999999999999884 56788889999999999999987766 678899
Q ss_pred CCccEEEcccccccccCCccccCCCCCcEEEcccCcCcc-ccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEE
Q 039116 83 TLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSG-TIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVI 161 (248)
Q Consensus 83 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L 161 (248)
++|+.|++++|.+.+..+..+..+++|+.|++.+|.+++ ..|..+..++++ ++|++++|.+++..|..+..+++|+.|
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L 502 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL-TFLDLSKCQLEQISWGVFDTLHRLQLL 502 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC-CEEECCCCcCCccChhhhcccccCCEE
Confidence 999999999999998888889999999999999999986 367778889999 999999999998788889999999999
Q ss_pred EecCCcCCCccCC------CCceEEccCCcceeeccCCcccC-CCceeeecCCcccee
Q 039116 162 DISENKLSDDIPN------SLENLNLSFNHFEGEVPIKGVFN-NSSAISLDGNDNLCG 212 (248)
Q Consensus 162 ~l~~n~i~~~~p~------~L~~L~l~~n~l~~~~~~~~~~~-~l~~l~l~~n~~~~~ 212 (248)
++++|++++..|. .|++|++++|++++.++....++ +|+.+++++||+.|.
T Consensus 503 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp ECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred ECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccC
Confidence 9999999876553 49999999999997666666776 599999999999884
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=5.4e-24 Score=175.93 Aligned_cols=193 Identities=20% Similarity=0.236 Sum_probs=133.2
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+++.|++++|.+....+..|.++++|++|++++|.+++..|.++.++++|++|++++|.+. .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 7777888877777555667777778888888888777666777777777888887777776 3444333 667777777
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCcc--ccchhhhhc--------------------cccccEEEcccCcCCCCCC
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSG--TIPTEVIRL--------------------SSLSIYLDLSQNQLNGPFP 149 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~--~~~~~~~~~--------------------~~ll~~L~l~~n~i~~~~~ 149 (248)
+|.+....+..+..+++|+.|++.+|.++. ..+..+..+ +.+ ++|++++|.+++..+
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L-~~L~l~~n~i~~~~~ 210 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETL-NELHLDHNKIQAIEL 210 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSC-SCCBCCSSCCCCCCT
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCC-CEEECCCCcCCccCH
Confidence 777765444556667777777777666641 222222111 345 677777777776666
Q ss_pred cCccCCCCccEEEecCCcCCCccC------CCCceEEccCCcceeeccCCcccCCCceeeecCCc
Q 039116 150 SNFGVLKNLGVIDISENKLSDDIP------NSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGND 208 (248)
Q Consensus 150 ~~~~~~~~L~~L~l~~n~i~~~~p------~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~ 208 (248)
..+..+++|+.|++++|++++..+ +.|++|++++|+++..+.....+++|+.+++++|+
T Consensus 211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC
Confidence 777788888888888888875444 34888888888888555556777888888888874
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=2.8e-24 Score=179.08 Aligned_cols=202 Identities=15% Similarity=0.140 Sum_probs=156.0
Q ss_pred hhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCC-cccCCCC
Q 039116 5 AVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIP-PSIGNLT 83 (248)
Q Consensus 5 ~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~ 83 (248)
.+.+++ +|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+....+ ..+..++
T Consensus 71 ~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 71 DLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149 (353)
T ss_dssp TTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred HhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence 566777 89999999998887777788888999999999999886555558888899999999998884433 4688889
Q ss_pred CccEEEcccc-cccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEE
Q 039116 84 LLTTLNFGEN-MLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVID 162 (248)
Q Consensus 84 ~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~ 162 (248)
+|++|++++| .+....+..+..+++|+.|++.+|.+++..|..+..++++ ++|++++|.++......+..+++|+.|+
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV-SHLILHMKQHILLLEIFVDVTSSVECLE 228 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE-EEEEEECSCSTTHHHHHHHHTTTEEEEE
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC-CeecCCCCccccchhhhhhhcccccEEE
Confidence 9999999888 4666556778888889999999998886667778888888 8899999988633233334578899999
Q ss_pred ecCCcCCCccC---------CCCceEEccCCcceee-----ccCCcccCCCceeeecCCc
Q 039116 163 ISENKLSDDIP---------NSLENLNLSFNHFEGE-----VPIKGVFNNSSAISLDGND 208 (248)
Q Consensus 163 l~~n~i~~~~p---------~~L~~L~l~~n~l~~~-----~~~~~~~~~l~~l~l~~n~ 208 (248)
+++|.+++..+ ..++.+++.++.+++. +.....+++|+.|++++|.
T Consensus 229 L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp EESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred CCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 99998876432 2367777777777652 2245667888999998883
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5.4e-24 Score=189.01 Aligned_cols=204 Identities=23% Similarity=0.222 Sum_probs=136.5
Q ss_pred chhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCC
Q 039116 3 PEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNL 82 (248)
Q Consensus 3 p~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 82 (248)
|..|+.+. +|++|++++|.+.+..|..|+++++|++|++++|.++...+..|.++++|++|++++|.+.+..|..++.+
T Consensus 92 ~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 170 (597)
T 3oja_B 92 TYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170 (597)
T ss_dssp TTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred hHHhcCCC-CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC
Confidence 34677777 89999999999987777788999999999999999986656667889999999999999888878888889
Q ss_pred CCccEEEcccccccccCCc-----------------------------------------------------------cc
Q 039116 83 TLLTTLNFGENMLEESIPS-----------------------------------------------------------SL 103 (248)
Q Consensus 83 ~~L~~L~l~~n~~~~~~~~-----------------------------------------------------------~l 103 (248)
++|+.|++++|.+++.... .+
T Consensus 171 ~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l 250 (597)
T 3oja_B 171 TSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWL 250 (597)
T ss_dssp TTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGG
T ss_pred CcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhh
Confidence 9999999988887653211 12
Q ss_pred cCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCccC------CCCc
Q 039116 104 GKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIP------NSLE 177 (248)
Q Consensus 104 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p------~~L~ 177 (248)
..+++|+.|++.+|.+++..|..++.++.| ++|++++|.+++ +|..+..+++|+.|++++|.++ .+| +.|+
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~ 327 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRL-ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 327 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSC-CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCC-CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCC
Confidence 334445555555555544444444555555 555555555542 3334444555555555555555 222 2366
Q ss_pred eEEccCCcceeeccCCcccCCCceeeecCCcccee
Q 039116 178 NLNLSFNHFEGEVPIKGVFNNSSAISLDGNDNLCG 212 (248)
Q Consensus 178 ~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~ 212 (248)
+|++++|.+++.. ...+++|+.|++++|++-|.
T Consensus 328 ~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 328 NLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp EEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred EEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCCh
Confidence 6666666665432 45566777777777776654
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=7.2e-25 Score=200.63 Aligned_cols=182 Identities=26% Similarity=0.367 Sum_probs=109.6
Q ss_pred CchhhhcccCCccEEEcccccccc-----------------Cchhhhh--cCcCCcEEEcCCCcCCCCCChhhcCCcccc
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFG-----------------NIPSGLR--NLVNLELLHLGDNQFKGQIPGTIGDLLKLQ 62 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~-----------------~~p~~~~--~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 62 (248)
||..+++++ +|+.|+|++|.+.+ .+|+.++ ++++|++|++++|.+.+..|..+.++++|+
T Consensus 440 IP~~l~~L~-~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLT-KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcCC-CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 566666666 77777777777665 2666655 677777777777776666676677777777
Q ss_pred EEEecCcc-ccc-cCCcccC-------CCCCccEEEcccccccccCCc--cccCCCCCcEEEcccCcCccccchhhhhcc
Q 039116 63 RLTLQGNK-FLG-EIPPSIG-------NLTLLTTLNFGENMLEESIPS--SLGKCQNIALLDLSNNNLSGTIPTEVIRLS 131 (248)
Q Consensus 63 ~L~l~~n~-l~~-~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~ 131 (248)
.|++++|+ +++ .+|..++ .+++|+.|++++|.++ .+|. .+..+++|+.|++.+|.++ .+| .++.++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence 77777775 554 4444332 3346666666666666 3555 5666666666666666665 555 455555
Q ss_pred ccccEEEcccCcCCCCCCcCccCCCC-ccEEEecCCcCCCccCCC--------CceEEccCCcceeec
Q 039116 132 SLSIYLDLSQNQLNGPFPSNFGVLKN-LGVIDISENKLSDDIPNS--------LENLNLSFNHFEGEV 190 (248)
Q Consensus 132 ~ll~~L~l~~n~i~~~~~~~~~~~~~-L~~L~l~~n~i~~~~p~~--------L~~L~l~~n~l~~~~ 190 (248)
++ +.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|.. |+.|++++|++++.+
T Consensus 596 ~L-~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 596 KL-TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp EE-SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred cc-eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcc
Confidence 55 56666666665 45555555555 666666666555 33321 455555555555433
No 38
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.8e-24 Score=187.58 Aligned_cols=209 Identities=22% Similarity=0.210 Sum_probs=154.1
Q ss_pred Cchhhhccc---CCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCc-
Q 039116 2 LPEAVGSLS---TQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPP- 77 (248)
Q Consensus 2 lp~~~~~~~---~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~- 77 (248)
+|..+..+. ++|+.|++++|.+.+..|..|.++++|++|++++|.+++..+ +..+++|++|++++|.+.+..+.
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~ 99 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGP 99 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECT
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCC
Confidence 344444443 279999999999998778899999999999999999986544 77888899999888887643211
Q ss_pred ---------------ccCCCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhh-hccccccEEEccc
Q 039116 78 ---------------SIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVI-RLSSLSIYLDLSQ 141 (248)
Q Consensus 78 ---------------~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-~~~~ll~~L~l~~ 141 (248)
....+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+. .++.+ ++|++++
T Consensus 100 ~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-~~L~Ls~ 178 (487)
T 3oja_A 100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQY 178 (487)
T ss_dssp TCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTT
T ss_pred CcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-cEEecCC
Confidence 012346677777777777776666777778888888888888765665554 56777 7888888
Q ss_pred CcCCCCCCcCccCCCCccEEEecCCcCCCccC-----CCCceEEccCCcceeeccCCcccCCCceeeecCCccceeccC
Q 039116 142 NQLNGPFPSNFGVLKNLGVIDISENKLSDDIP-----NSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDNLCGGIS 215 (248)
Q Consensus 142 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p-----~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~l~ 215 (248)
|.+++. + ....+++|+.|++++|.+++..| ..|+.|++++|.+++.++....+++|+.+++++|+..|+.++
T Consensus 179 N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 179 NFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp SCCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred Cccccc-c-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchH
Confidence 888744 2 23357888888888888875433 348888888888887666667778888888888888876554
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=1e-23 Score=189.80 Aligned_cols=208 Identities=25% Similarity=0.271 Sum_probs=150.3
Q ss_pred hhhhcccCCccEEEccccccccCch-hhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCcccc--ccCCcccC
Q 039116 4 EAVGSLSTQLKILSVENNQFFGNIP-SGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFL--GEIPPSIG 80 (248)
Q Consensus 4 ~~~~~~~~~L~~L~l~~~~i~~~~p-~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~ 80 (248)
..+..+. +|+.|++++|.+.+.+| ..|.++++|+.|++++|++....+..+..+++|+.|++++|.+. +..|..+.
T Consensus 399 ~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 399 DAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTTTCT-TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred hhhhCCC-CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 3444444 56666666666554333 45556666666666666665555556666666666666666654 35667788
Q ss_pred CCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccc--------hhhhhccccccEEEcccCcCCCCCCcCc
Q 039116 81 NLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIP--------TEVIRLSSLSIYLDLSQNQLNGPFPSNF 152 (248)
Q Consensus 81 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~--------~~~~~~~~ll~~L~l~~n~i~~~~~~~~ 152 (248)
.+++|+.|++++|.+++..+..+..+++|+.|++.+|.+++..+ ..+..++.+ ++|++++|.++...+..+
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L-~~L~L~~N~l~~i~~~~~ 556 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL-HILNLESNGFDEIPVEVF 556 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC-CEEECCSSCCCCCCTTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC-CEEECCCCCCCCCCHHHc
Confidence 88888888888888887666678888889999999988873211 125677888 899999999985545578
Q ss_pred cCCCCccEEEecCCcCCCccC------CCCceEEccCCcceeecc-CCc-ccCCCceeeecCCccceec
Q 039116 153 GVLKNLGVIDISENKLSDDIP------NSLENLNLSFNHFEGEVP-IKG-VFNNSSAISLDGNDNLCGG 213 (248)
Q Consensus 153 ~~~~~L~~L~l~~n~i~~~~p------~~L~~L~l~~n~l~~~~~-~~~-~~~~l~~l~l~~n~~~~~~ 213 (248)
..+++|+.|++++|++++..+ ..|++|++++|++++..+ .+. .+++++.+++++||+.|.+
T Consensus 557 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 899999999999999985433 348999999999998776 233 6889999999999999953
No 40
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=4e-24 Score=195.74 Aligned_cols=221 Identities=21% Similarity=0.269 Sum_probs=175.6
Q ss_pred Cchhhh--cccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCc-CCC-CCChhhcCCc-------cccEEEecCcc
Q 039116 2 LPEAVG--SLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQ-FKG-QIPGTIGDLL-------KLQRLTLQGNK 70 (248)
Q Consensus 2 lp~~~~--~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~-i~~-~~~~~~~~l~-------~L~~L~l~~n~ 70 (248)
+|+.++ ++. +|+.|++++|.+.+.+|..|+++++|+.|++++|+ +++ ..|..+..++ +|++|++++|.
T Consensus 481 iP~~l~f~~L~-~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLK-DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCT-TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCC-CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 788876 888 99999999999988999999999999999999998 886 6777666554 99999999999
Q ss_pred ccccCCc--ccCCCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccc-cccEEEcccCcCCCC
Q 039116 71 FLGEIPP--SIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSS-LSIYLDLSQNQLNGP 147 (248)
Q Consensus 71 l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~-ll~~L~l~~n~i~~~ 147 (248)
+. .+|. .++.+++|+.|++++|.++ .+| .+..+++|+.|++.+|.++ .+|..+..++. + ++|++++|.++ .
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L-~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQV-EGLGFSHNKLK-Y 633 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTC-CEEECCSSCCC-S
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccC-CEEECcCCCCC-c
Confidence 98 7787 8999999999999999998 577 8888999999999999998 88888888888 8 89999999998 6
Q ss_pred CCcCccCCC--CccEEEecCCcCCCccC-----------CCCceEEccCCcceeecc-CCcccCCCceeeecCCccc---
Q 039116 148 FPSNFGVLK--NLGVIDISENKLSDDIP-----------NSLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNL--- 210 (248)
Q Consensus 148 ~~~~~~~~~--~L~~L~l~~n~i~~~~p-----------~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~--- 210 (248)
+|..+...+ +|+.|++++|++++.+| ..|+.|++++|+++..++ .+..+++|+.|++++|.--
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip 713 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCC
T ss_pred CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccC
Confidence 777776654 48889999888876544 147788888888874433 2345677778888776321
Q ss_pred ---ee----------ccCccccCCCCcccccc
Q 039116 211 ---CG----------GISELHLSTCSIKESKQ 229 (248)
Q Consensus 211 ---~~----------~l~~l~~~~c~~~~~~~ 229 (248)
.. .+..|+++.|.+...+.
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~ 745 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD 745 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCCCCCG
T ss_pred hHHhccccccccccCCccEEECCCCCCccchH
Confidence 11 45566677777665543
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=6.5e-23 Score=184.51 Aligned_cols=147 Identities=27% Similarity=0.207 Sum_probs=109.0
Q ss_pred hhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCC
Q 039116 4 EAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLT 83 (248)
Q Consensus 4 ~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 83 (248)
..|+++. +|++|++++|.+.+..|..|+++++|++|++++|.++...+.+|.++++|++|++++|.+.+..+..++.++
T Consensus 43 ~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 121 (680)
T 1ziw_A 43 ANFTRYS-QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121 (680)
T ss_dssp GGGGGGT-TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred HHHhCCC-cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccC
Confidence 3466666 888888888888777777888888888888888888855555677888888888888888766667788888
Q ss_pred CccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhh--hccccccEEEcccCcCCCCCCcCc
Q 039116 84 LLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVI--RLSSLSIYLDLSQNQLNGPFPSNF 152 (248)
Q Consensus 84 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~--~~~~ll~~L~l~~n~i~~~~~~~~ 152 (248)
+|++|++++|.+++..+..+..+++|++|++.+|.+++..+..+. ..+.+ ++|++++|.+++..|..+
T Consensus 122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L-~~L~L~~n~l~~~~~~~~ 191 (680)
T 1ziw_A 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL-KKLELSSNQIKEFSPGCF 191 (680)
T ss_dssp TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE-SEEECTTCCCCCBCTTGG
T ss_pred CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccc-cEEECCCCcccccChhhh
Confidence 888888888888776677777888888888888887744444333 33566 777777777765544433
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=1.9e-23 Score=172.65 Aligned_cols=150 Identities=23% Similarity=0.317 Sum_probs=124.6
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+++.++++++.+. .+|..+. ++++.|++++|.++...+..+.++++|++|++++|.+.+..|..++.+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 7999999999988 6776653 789999999999997778899999999999999999998888999999999999999
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCC--CCCcCccCCCCccEEEecCCcCC
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNG--PFPSNFGVLKNLGVIDISENKLS 169 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~~n~i~ 169 (248)
+|.++. +|..+. ++|++|++.+|.++...+..+..++++ ++|++++|.++. ..+..+..+ +|+.|++++|.++
T Consensus 111 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 111 KNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM-NCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp SSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSC-CEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccC-CEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 999985 555544 799999999999985444557889999 999999999863 455555555 5666666666554
No 43
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=5.9e-23 Score=164.97 Aligned_cols=180 Identities=24% Similarity=0.282 Sum_probs=157.5
Q ss_pred CCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEc
Q 039116 11 TQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNF 90 (248)
Q Consensus 11 ~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 90 (248)
+++++|++++|.+....+..|.++++|++|++++|.++...+..|.++++|++|++++|.+....+..+..+++|+.|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 48999999999999776778999999999999999999766677788999999999999999777778899999999999
Q ss_pred ccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCC
Q 039116 91 GENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSD 170 (248)
Q Consensus 91 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 170 (248)
++|.++...+..+..+++|+.|++.+|.++...+..+..++++ ++|++++|.+++..+..+..+++|+.|++++|++++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL-KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc-ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 9999998777788999999999999999984444446788999 999999999997777778999999999999999985
Q ss_pred ccC------CCCceEEccCCcceeecc
Q 039116 171 DIP------NSLENLNLSFNHFEGEVP 191 (248)
Q Consensus 171 ~~p------~~L~~L~l~~n~l~~~~~ 191 (248)
..+ +.|+.|++++|++.....
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 196 VPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CCHHHhccccCCCEEEecCCCeeCCCc
Confidence 443 248999999999876543
No 44
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=8.1e-24 Score=173.87 Aligned_cols=205 Identities=21% Similarity=0.189 Sum_probs=147.5
Q ss_pred hhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCc--------
Q 039116 6 VGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPP-------- 77 (248)
Q Consensus 6 ~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------- 77 (248)
++...++|++|++++|.+.+..|..|.++++|++|++++|.+++..+ +..+++|++|++++|.+.+..+.
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l 106 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHA 106 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEEC
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEEC
Confidence 33333489999999999998778899999999999999999985443 77888999999998887642110
Q ss_pred --------ccCCCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhh-hccccccEEEcccCcCCCCC
Q 039116 78 --------SIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVI-RLSSLSIYLDLSQNQLNGPF 148 (248)
Q Consensus 78 --------~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-~~~~ll~~L~l~~n~i~~~~ 148 (248)
....+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+. .++.+ ++|++++|.+++.
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L-~~L~L~~N~l~~~- 184 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYNFIYDV- 184 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTSCCCEE-
T ss_pred CCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC-CEEECCCCcCccc-
Confidence 012345677777777777765556677777888888888887754444443 56777 7888888887743
Q ss_pred CcCccCCCCccEEEecCCcCCCccC-----CCCceEEccCCcceeeccCCcccCCCceeeecCCccceeccC
Q 039116 149 PSNFGVLKNLGVIDISENKLSDDIP-----NSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDNLCGGIS 215 (248)
Q Consensus 149 ~~~~~~~~~L~~L~l~~n~i~~~~p-----~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~l~ 215 (248)
+. ...+++|+.|++++|++++..+ +.|++|++++|++++..+.+..+++|+.+++++|+..|+.++
T Consensus 185 ~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 185 KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 22 2347788888888888874322 348888888888886655667778888888888887765433
No 45
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=1.3e-23 Score=165.71 Aligned_cols=194 Identities=14% Similarity=0.141 Sum_probs=150.6
Q ss_pred cCCccEEEccccccccCchhhhhcCcCCcEEEcCCCc-CCCCCChhhcCCccccEEEecC-ccccccCCcccCCCCCccE
Q 039116 10 STQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQ-FKGQIPGTIGDLLKLQRLTLQG-NKFLGEIPPSIGNLTLLTT 87 (248)
Q Consensus 10 ~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~ 87 (248)
+.++++|++++|.+++..+..|.++++|++|++++|+ ++.+.+.+|.++++|++|++++ |.+....+..+..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3478999999999886666688889999999999996 8866677888899999999998 8888666677888999999
Q ss_pred EEcccccccccCCccccCCCCCc---EEEcccC-cCccccchhhhhcccccc-EEEcccCcCCCCCCcCccCCCCccEEE
Q 039116 88 LNFGENMLEESIPSSLGKCQNIA---LLDLSNN-NLSGTIPTEVIRLSSLSI-YLDLSQNQLNGPFPSNFGVLKNLGVID 162 (248)
Q Consensus 88 L~l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~i~~~~~~~~~~~~~ll~-~L~l~~n~i~~~~~~~~~~~~~L~~L~ 162 (248)
|++++|.+++ +|. +..+++|+ .|++.+| .++...+..+..++.+ + ++++++|.++...+..+.. ++|+.|+
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L-~~~L~l~~n~l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-TLTLKLYNNGFTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-EEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-eeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence 9999998886 555 77777777 9999998 8874444456778888 8 8999999888433334444 7899999
Q ss_pred ecCCc-CCCccC-------CCCceEEccCCcceeeccCCcccCCCceeeecCCcc
Q 039116 163 ISENK-LSDDIP-------NSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDN 209 (248)
Q Consensus 163 l~~n~-i~~~~p-------~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~ 209 (248)
+++|+ +++..+ ..|++|++++|++++..+ ..+++++.|++++++.
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~--~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS--KGLEHLKELIARNTWT 238 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC--TTCTTCSEEECTTC--
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh--hHhccCceeeccCccC
Confidence 99995 764222 358888999998886544 3788888888888753
No 46
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=5.9e-23 Score=165.14 Aligned_cols=197 Identities=25% Similarity=0.287 Sum_probs=140.2
Q ss_pred hcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCcc
Q 039116 7 GSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLT 86 (248)
Q Consensus 7 ~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 86 (248)
..+. +|+.|+++++.+. .. +.+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 38 ~~l~-~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELN-SIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHT-TCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccc-ceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3445 7888888888776 23 3477788888888888887742 3677778888888888887766666677788888
Q ss_pred EEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCC
Q 039116 87 TLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISEN 166 (248)
Q Consensus 87 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 166 (248)
+|++++|.+++..+..+..+++|+.|++.+|.+++..+..+..++++ ++|++++|.+++..+..++.+++|+.|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL-TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-CEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 88888888876556667777888888888888774444445677777 78888888887666666677788888888888
Q ss_pred cCCCccCC------CCceEEccCCcceeeccCCcccCCCceeeecCCccceeccCc
Q 039116 167 KLSDDIPN------SLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDNLCGGISE 216 (248)
Q Consensus 167 ~i~~~~p~------~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~~l~~ 216 (248)
++++..+. .|++|++++|.+.+. +++++.+++.+| .+.|.+|.
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~l~~~~n-~~~g~ip~ 240 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWIN-KHSGVVRN 240 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCC------TTTTHHHHHHHH-HTGGGBBC
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCcccc------CcHHHHHHHHHH-hCCCcccC
Confidence 88754442 377778877776543 445666666666 45565654
No 47
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.5e-23 Score=167.35 Aligned_cols=183 Identities=29% Similarity=0.331 Sum_probs=162.6
Q ss_pred hhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCC
Q 039116 4 EAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLT 83 (248)
Q Consensus 4 ~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 83 (248)
+.++.++ +|++|++++|.+.+ . +.+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++
T Consensus 57 ~~l~~l~-~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 133 (272)
T 3rfs_A 57 QGIQYLP-NVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133 (272)
T ss_dssp TTGGGCT-TCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cccccCC-CCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC
Confidence 3467777 99999999999985 3 4789999999999999999977777789999999999999999977777789999
Q ss_pred CccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEe
Q 039116 84 LLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDI 163 (248)
Q Consensus 84 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 163 (248)
+|++|++++|.+++..+..+..+++|+.|++.+|++++..+..+..++++ ++|++++|.+++..+..+..+++|+.|++
T Consensus 134 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL-KDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC-CEEECCCCcCCccCHHHHhCCcCCCEEEc
Confidence 99999999999998667778999999999999999995555556788999 99999999999877777899999999999
Q ss_pred cCCcCCCccCCCCceEEccCCcceeecc
Q 039116 164 SENKLSDDIPNSLENLNLSFNHFEGEVP 191 (248)
Q Consensus 164 ~~n~i~~~~p~~L~~L~l~~n~l~~~~~ 191 (248)
++|.+.+..| .++.+++..|.++|.+|
T Consensus 213 ~~N~~~~~~~-~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 213 HDNPWDCTCP-GIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CSSCBCCCTT-TTHHHHHHHHHTGGGBB
T ss_pred cCCCccccCc-HHHHHHHHHHhCCCccc
Confidence 9999986655 59999999999999888
No 48
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.5e-23 Score=171.65 Aligned_cols=194 Identities=21% Similarity=0.190 Sum_probs=162.8
Q ss_pred CccEEEccccccccCchhhh--hcCcCCcEEEcCCCcCCCCCC----hhhcCCccccEEEecCccccccCCcccCCCCCc
Q 039116 12 QLKILSVENNQFFGNIPSGL--RNLVNLELLHLGDNQFKGQIP----GTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLL 85 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~--~~l~~L~~L~l~~~~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 85 (248)
+|++|++++|.+.+..|..+ .++++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 79999999999998888888 889999999999999996544 344578999999999999988888899999999
Q ss_pred cEEEccccccccc--C--CccccCCCCCcEEEcccCcCccccchh----hhhccccccEEEcccCcCCCCCCcCccCC--
Q 039116 86 TTLNFGENMLEES--I--PSSLGKCQNIALLDLSNNNLSGTIPTE----VIRLSSLSIYLDLSQNQLNGPFPSNFGVL-- 155 (248)
Q Consensus 86 ~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~i~~~~~~~----~~~~~~ll~~L~l~~n~i~~~~~~~~~~~-- 155 (248)
++|++++|.+.+. . +..+..+++|++|++.+|+++ .++.. +..++.+ ++|++++|.+++..|..+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L-~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQP-HSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCC-SSEECTTSCCCCCCCSCCSSCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCC-CEEECCCCCCCccchhhHHhccC
Confidence 9999999987542 1 233467899999999999997 44432 4567888 999999999997777777665
Q ss_pred -CCccEEEecCCcCCCccC----CCCceEEccCCcceeeccCCcccCCCceeeecCCcc
Q 039116 156 -KNLGVIDISENKLSDDIP----NSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDN 209 (248)
Q Consensus 156 -~~L~~L~l~~n~i~~~~p----~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~ 209 (248)
++|+.|++++|+++ .+| +.|++|++++|++++. +....+++|+.|++++|+.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTT
T ss_pred cCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCC
Confidence 79999999999998 444 4699999999999975 3367889999999999974
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=5.3e-23 Score=189.27 Aligned_cols=140 Identities=26% Similarity=0.327 Sum_probs=75.5
Q ss_pred hhhhcccCCccEEEccccccccCc-hhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcc--cC
Q 039116 4 EAVGSLSTQLKILSVENNQFFGNI-PSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPS--IG 80 (248)
Q Consensus 4 ~~~~~~~~~L~~L~l~~~~i~~~~-p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--l~ 80 (248)
..|.++. +|+.|++++|...+.+ |.+|.++++|++|++++|.+.+..|+.|.++++|++|++++|.+.+..+.. ++
T Consensus 42 ~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 42 SSFPFLE-QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp SSCSSCC-SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred hHCcccc-cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 3444444 5555555555333233 555666666666666666666555666666666666666666655433332 55
Q ss_pred CCCCccEEEcccccccccCC-ccccCCCCCcEEEcccCcCccccchhhhhc--cccccEEEcccCcCC
Q 039116 81 NLTLLTTLNFGENMLEESIP-SSLGKCQNIALLDLSNNNLSGTIPTEVIRL--SSLSIYLDLSQNQLN 145 (248)
Q Consensus 81 ~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~--~~ll~~L~l~~n~i~ 145 (248)
.+++|++|++++|.+++..+ ..++++++|+.|++.+|.+++..+..+..+ +++ +.|++++|.+.
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L-~~L~L~~n~l~ 187 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL-SFFSLAANSLY 187 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS-CCCEECCSBSC
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc-ceEECCCCccc
Confidence 66666666666666654333 345666666666666666654444444333 333 34444444433
No 50
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=7.9e-23 Score=178.54 Aligned_cols=99 Identities=24% Similarity=0.263 Sum_probs=57.5
Q ss_pred ccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCC--ccC------CCCceEEccCCcceeecc--CCcccCCC
Q 039116 130 LSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSD--DIP------NSLENLNLSFNHFEGEVP--IKGVFNNS 199 (248)
Q Consensus 130 ~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~--~~p------~~L~~L~l~~n~l~~~~~--~~~~~~~l 199 (248)
++.+ ++|++++|.+++..|..++.+++|+.|++++|++++ .+| ..|++|++++|++++.++ .+..+++|
T Consensus 323 l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 323 ISPF-LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp CCCC-CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred CCcc-cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 3444 566666666665556666666666666666666664 222 347777777777766333 34555667
Q ss_pred ceeeecCCccc-------eeccCccccCCCCcccccc
Q 039116 200 SAISLDGNDNL-------CGGISELHLSTCSIKESKQ 229 (248)
Q Consensus 200 ~~l~l~~n~~~-------~~~l~~l~~~~c~~~~~~~ 229 (248)
+.|++++|.-. ...+..+++++|.+..++.
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~ 438 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPK 438 (520)
T ss_dssp CEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCG
T ss_pred CEEECcCCCCCcchhhhhcccCCEEECCCCcccccch
Confidence 77777766321 1245556666666655443
No 51
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=7e-23 Score=181.96 Aligned_cols=133 Identities=23% Similarity=0.245 Sum_probs=65.3
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
++++|++++|.+.+..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+.+..|+.++.+++|++|+++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence 45555555555554444445555555555555555554444445555555555555555544444455555555555555
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCcc-ccchhhhhccccccEEEcccCcCC
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSG-TIPTEVIRLSSLSIYLDLSQNQLN 145 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~ll~~L~l~~n~i~ 145 (248)
+|.+++..+..++.+++|++|++.+|.+++ .+|..++.++++ ++|++++|.++
T Consensus 113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L-~~L~Ls~n~l~ 166 (606)
T 3vq2_A 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL-VHVDLSYNYIQ 166 (606)
T ss_dssp TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTC-CEEECCSSCCC
T ss_pred CCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCC-CEEEccCCcce
Confidence 555544333444444555555555554442 234444444444 44444444444
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=4.5e-24 Score=175.00 Aligned_cols=200 Identities=21% Similarity=0.226 Sum_probs=155.1
Q ss_pred CchhhhcccCCccEEEccccccc-cCchhhhh-------cCcCCcEEEcCCCcCCCCCChhh--cCCccccEEEecCccc
Q 039116 2 LPEAVGSLSTQLKILSVENNQFF-GNIPSGLR-------NLVNLELLHLGDNQFKGQIPGTI--GDLLKLQRLTLQGNKF 71 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~-~~~p~~~~-------~l~~L~~L~l~~~~i~~~~~~~~--~~l~~L~~L~l~~n~l 71 (248)
+|..+.. .++.|++++|.+. ...|..+. ++++|++|++++|.+++..|..+ ..+++|++|++++|.+
T Consensus 57 ~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 133 (312)
T 1wwl_A 57 DLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133 (312)
T ss_dssp CCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred cHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence 4555554 3778888888884 34565554 68999999999999988788776 7889999999999998
Q ss_pred cccCCcccCCC-----CCccEEEcccccccccCCccccCCCCCcEEEcccCcCccc--cchhh--hhccccccEEEcccC
Q 039116 72 LGEIPPSIGNL-----TLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGT--IPTEV--IRLSSLSIYLDLSQN 142 (248)
Q Consensus 72 ~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~--~~~~~--~~~~~ll~~L~l~~n 142 (248)
.+. |..++.+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+..+ ..++++ ++|++++|
T Consensus 134 ~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L-~~L~L~~N 211 (312)
T 1wwl_A 134 ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL-QVLALRNA 211 (312)
T ss_dssp SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTC-CEEECTTS
T ss_pred cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCC-CEEECCCC
Confidence 866 7666665 8999999999999887778899999999999999987643 23344 677888 89999999
Q ss_pred cCCCC--CC-cCccCCCCccEEEecCCcCCCccC-------CCCceEEccCCcceeeccCCcccCCCceeeecCCc
Q 039116 143 QLNGP--FP-SNFGVLKNLGVIDISENKLSDDIP-------NSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGND 208 (248)
Q Consensus 143 ~i~~~--~~-~~~~~~~~L~~L~l~~n~i~~~~p-------~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~ 208 (248)
.+++. .+ ..+..+++|+.|++++|++++..| ..|++|++++|+++..+... +++|+.|++++|.
T Consensus 212 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~--~~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYNR 285 (312)
T ss_dssp CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSC--CSEEEEEECCSSC
T ss_pred cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhc--cCCceEEECCCCC
Confidence 98732 12 233567899999999999987543 35899999999998443322 2889999999983
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=5e-23 Score=180.80 Aligned_cols=203 Identities=18% Similarity=0.198 Sum_probs=170.6
Q ss_pred CchhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCC
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGN 81 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 81 (248)
+|+.++ ++|++|++++|.+++..|..|.++++|++|++++|++++..|.+|.++++|++|++++|.+.+..+..++.
T Consensus 20 ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 20 IPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp CCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred ccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 566553 48999999999999777889999999999999999999888889999999999999999999777777999
Q ss_pred CCCccEEEccccccccc-CCccccCCCCCcEEEcccCcCccccc-hhhhhccccccEEEcccCcCCCCCCcCccCCCCcc
Q 039116 82 LTLLTTLNFGENMLEES-IPSSLGKCQNIALLDLSNNNLSGTIP-TEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLG 159 (248)
Q Consensus 82 l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~-~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~ 159 (248)
+++|++|++++|.+++. .+..+..+++|++|++.+|.+.+.++ ..+..++++ ++|++++|.+++..|..++.+++|+
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL-NELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE-EEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccccc-CeeeccCCcccccChhhhhccccCc
Confidence 99999999999999863 46788999999999999998443555 567888999 9999999999988888999999999
Q ss_pred EEEecCCcCCCcc------CCCCceEEccCCcceeec----cCCcccCCCceeeecCCc
Q 039116 160 VIDISENKLSDDI------PNSLENLNLSFNHFEGEV----PIKGVFNNSSAISLDGND 208 (248)
Q Consensus 160 ~L~l~~n~i~~~~------p~~L~~L~l~~n~l~~~~----~~~~~~~~l~~l~l~~n~ 208 (248)
.|++++|.+.... ...|++|++++|++++.. +....+++++.+++++|.
T Consensus 176 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp EEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred eEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 9999999876311 246899999999988742 244557778888888874
No 54
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=186.93 Aligned_cols=222 Identities=24% Similarity=0.281 Sum_probs=156.2
Q ss_pred chhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChh--hcCCccccEEEecCccccccCC-ccc
Q 039116 3 PEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGT--IGDLLKLQRLTLQGNKFLGEIP-PSI 79 (248)
Q Consensus 3 p~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~l 79 (248)
|..|+++. +|++|++++|.+.+..|+.|.++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+ ..+
T Consensus 66 ~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~ 144 (844)
T 3j0a_A 66 KEAFRNLP-NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144 (844)
T ss_dssp TTTTSSCT-TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGG
T ss_pred HHHhcCCC-CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhH
Confidence 56788888 9999999999999888999999999999999999999766554 8899999999999999986654 578
Q ss_pred CCCCCccEEEcccccccccCCccccCC--CC------------------------------CcEEEcccCcCccccchhh
Q 039116 80 GNLTLLTTLNFGENMLEESIPSSLGKC--QN------------------------------IALLDLSNNNLSGTIPTEV 127 (248)
Q Consensus 80 ~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~------------------------------L~~L~l~~n~i~~~~~~~~ 127 (248)
+.+++|++|++++|.+++..+..+..+ ++ |+.|++.+|.+++..+..+
T Consensus 145 ~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 224 (844)
T 3j0a_A 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224 (844)
T ss_dssp GTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred hhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHH
Confidence 999999999999999877666555443 34 4555555554432222211
Q ss_pred hh--------------------------------------ccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCC
Q 039116 128 IR--------------------------------------LSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLS 169 (248)
Q Consensus 128 ~~--------------------------------------~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 169 (248)
.. .+.+ +.|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 303 (844)
T 3j0a_A 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV-RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303 (844)
T ss_dssp GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCC-CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC
T ss_pred HhhcCcccccceecccccccccccccccCCCChhhhhccccCCc-cEEECCCCcccccChhhhhcCCCCCEEECCCCcCC
Confidence 11 1344 66666666666555666677777777777777776
Q ss_pred CccCC------CCceEEccCCcceeecc-CCcccCCCceeeecCCccc---------eeccCccccCCCCccc
Q 039116 170 DDIPN------SLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNL---------CGGISELHLSTCSIKE 226 (248)
Q Consensus 170 ~~~p~------~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~---------~~~l~~l~~~~c~~~~ 226 (248)
+..|. .|++|++++|.+++..+ .+..+++|+.|++++|.-- +..+..+++++|.+..
T Consensus 304 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 54332 37777777777766544 5566777777777776321 1244555666666544
No 55
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=2.3e-22 Score=177.33 Aligned_cols=103 Identities=19% Similarity=0.207 Sum_probs=52.8
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+++.|++++|.+.+..+.+|.++++|++|++++|++++..|++|.++++|++|++++|.++ .+|.. .+++|++|+++
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS 129 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence 5566666666655444555556666666666666665555555555555555555555554 22322 44445555555
Q ss_pred ccccccc-CCccccCCCCCcEEEcccC
Q 039116 92 ENMLEES-IPSSLGKCQNIALLDLSNN 117 (248)
Q Consensus 92 ~n~~~~~-~~~~l~~l~~L~~L~l~~n 117 (248)
+|.+++. .|..+..+++|+.|++.+|
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred CCCccccCchHhhcccCcccEEecCCC
Confidence 5544431 1234444444444444433
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=3.6e-22 Score=160.77 Aligned_cols=185 Identities=24% Similarity=0.305 Sum_probs=157.9
Q ss_pred hhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCC
Q 039116 4 EAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLT 83 (248)
Q Consensus 4 ~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 83 (248)
..+++++ +|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+....+..++.++
T Consensus 46 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 124 (276)
T 2z62_A 46 YSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (276)
T ss_dssp TTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred hHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCC
Confidence 3677777 999999999999977777899999999999999999988888899999999999999999877776899999
Q ss_pred CccEEEccccccccc-CCccccCCCCCcEEEcccCcCccccchhhhhcccccc----EEEcccCcCCCCCCcCccCCCCc
Q 039116 84 LLTTLNFGENMLEES-IPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSI----YLDLSQNQLNGPFPSNFGVLKNL 158 (248)
Q Consensus 84 ~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~----~L~l~~n~i~~~~~~~~~~~~~L 158 (248)
+|++|++++|.++.. .|..+..+++|+.|++.+|++++..+..+..+..+ + ++++++|.+++..+..+ ...+|
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~l~l~L~ls~n~l~~~~~~~~-~~~~L 202 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM-PLLNLSLDLSLNPMNFIQPGAF-KEIRL 202 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC-TTCCEEEECCSSCCCEECTTSS-CSCCE
T ss_pred CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc-cccceeeecCCCcccccCcccc-CCCcc
Confidence 999999999999864 58889999999999999999986555666666666 5 89999999985545444 44589
Q ss_pred cEEEecCCcCCCccC------CCCceEEccCCcceeecc
Q 039116 159 GVIDISENKLSDDIP------NSLENLNLSFNHFEGEVP 191 (248)
Q Consensus 159 ~~L~l~~n~i~~~~p------~~L~~L~l~~n~l~~~~~ 191 (248)
+.|++++|++++..+ ..|++|++++|++++..+
T Consensus 203 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 203 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 999999999985443 248999999999987654
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=2e-22 Score=177.59 Aligned_cols=174 Identities=22% Similarity=0.255 Sum_probs=138.8
Q ss_pred cCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEE
Q 039116 10 STQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLN 89 (248)
Q Consensus 10 ~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 89 (248)
+++++.|++++|.+++..+.+|.++++|++|++++|++++..+.+|.++++|++|++++|.+....+..++.+++|++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 34788999999998877777888999999999999998877778888899999999999988877778888899999999
Q ss_pred cccccccccCCccccCCCCCcEEEcccCcCcc-ccchhhhhccccccEEEcccCcCCCCCCcCccCCCCc----cEEEec
Q 039116 90 FGENMLEESIPSSLGKCQNIALLDLSNNNLSG-TIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNL----GVIDIS 164 (248)
Q Consensus 90 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L----~~L~l~ 164 (248)
+.+|.++...+..++.+++|++|++.+|.++. .+|..++.++++ ++|++++|.+++..+..++.+++| ..++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-CEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCC-CEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 99998887555568888899999999988874 367788888888 889999998886666666666666 778888
Q ss_pred CCcCCCccCC-----CCceEEccCC
Q 039116 165 ENKLSDDIPN-----SLENLNLSFN 184 (248)
Q Consensus 165 ~n~i~~~~p~-----~L~~L~l~~n 184 (248)
+|.+++..|. .+++|++++|
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n 210 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNN 210 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESC
T ss_pred CCCceecCHHHhccCcceeEecccc
Confidence 8877654432 2555555554
No 58
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=4.8e-22 Score=157.95 Aligned_cols=174 Identities=25% Similarity=0.271 Sum_probs=139.8
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
..++++++++.+. .+|..+. +.++.|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 5678888888887 6666554 678889999998887777788888889999999988887777778888899999999
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCc
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDD 171 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 171 (248)
+|.++...+..+..+++|+.|++.+|++++..+..+..++.+ ++|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL-KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc-cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 988887666777888889999999888884333445678888 8899999988866666788888899999999988854
Q ss_pred cC------CCCceEEccCCcceee
Q 039116 172 IP------NSLENLNLSFNHFEGE 189 (248)
Q Consensus 172 ~p------~~L~~L~l~~n~l~~~ 189 (248)
.+ ..|++|++++|++++.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 44 2488889999888765
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=7.8e-22 Score=172.22 Aligned_cols=127 Identities=22% Similarity=0.281 Sum_probs=89.2
Q ss_pred CCCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCcc--ccchhhhhccccccEEEcccCcCCCCCCc-CccCCC
Q 039116 80 GNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSG--TIPTEVIRLSSLSIYLDLSQNQLNGPFPS-NFGVLK 156 (248)
Q Consensus 80 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~--~~~~~~~~~~~ll~~L~l~~n~i~~~~~~-~~~~~~ 156 (248)
..+++|++|++++|.+++..|..+..+++|+.|++.+|++++ .+|..+..++++ ++|++++|.+++..|. .+..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC-CEEECCCCcCCcccccchhccCc
Confidence 456778888888888877677778888888888888888874 344567778888 8888888888863444 366677
Q ss_pred CccEEEecCCcCCCccC----CCCceEEccCCcceeeccCCcccCCCceeeecCC
Q 039116 157 NLGVIDISENKLSDDIP----NSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGN 207 (248)
Q Consensus 157 ~L~~L~l~~n~i~~~~p----~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n 207 (248)
+|+.|++++|++++..| ..|++|++++|+++..++....+++|+.|++++|
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCC
Confidence 77788887777765433 4566667776666644333345666666666666
No 60
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=6.6e-22 Score=161.82 Aligned_cols=190 Identities=25% Similarity=0.351 Sum_probs=161.2
Q ss_pred hhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCc
Q 039116 6 VGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLL 85 (248)
Q Consensus 6 ~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 85 (248)
...+. +|+.|+++++.+. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+.+. ..+..+++|
T Consensus 37 ~~~l~-~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L 109 (308)
T 1h6u_A 37 QADLD-GITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSI 109 (308)
T ss_dssp HHHHH-TCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred HHHcC-CcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCC
Confidence 34566 8999999999988 454 688999999999999999954 43 88999999999999998853 468899999
Q ss_pred cEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecC
Q 039116 86 TTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISE 165 (248)
Q Consensus 86 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 165 (248)
+.|++++|.+++ .+ .+..+++|+.|++.+|.++ .++. +..++++ ++|++++|.+++. +. +..+++|+.|++++
T Consensus 110 ~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L-~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 110 KTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQIT-NISP-LAGLTNL-QYLSIGNAQVSDL-TP-LANLSKLTTLKADD 182 (308)
T ss_dssp CEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTC-CEEECCSSCCCCC-GG-GTTCTTCCEEECCS
T ss_pred CEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccC-cCcc-ccCCCCc-cEEEccCCcCCCC-hh-hcCCCCCCEEECCC
Confidence 999999999986 33 4889999999999999998 4443 7788999 9999999999854 33 78999999999999
Q ss_pred CcCCCccC----CCCceEEccCCcceeeccCCcccCCCceeeecCCccc
Q 039116 166 NKLSDDIP----NSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDNL 210 (248)
Q Consensus 166 n~i~~~~p----~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~ 210 (248)
|.+++..+ +.|++|++++|++++..+ ...+++|+.+++++|+..
T Consensus 183 n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 183 NKISDISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp SCCCCCGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred CccCcChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence 99986433 459999999999998876 688999999999999753
No 61
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=6.8e-22 Score=160.42 Aligned_cols=181 Identities=24% Similarity=0.226 Sum_probs=155.5
Q ss_pred CchhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCC
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGN 81 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 81 (248)
+|..+. ++++.|++++|.+.+..+..|.++++|++|++++|.++...+. ..+++|++|++++|.+. .+|..+..
T Consensus 25 ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~ 98 (290)
T 1p9a_G 25 LPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQT 98 (290)
T ss_dssp CCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTT
T ss_pred CCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhcc
Confidence 454443 4899999999999987888999999999999999999954332 67899999999999998 67888899
Q ss_pred CCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEE
Q 039116 82 LTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVI 161 (248)
Q Consensus 82 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L 161 (248)
+++|++|++++|.+++..+..+..+++|+.|++.+|+++...+..+..++++ +.|++++|.++...+..+..+++|+.|
T Consensus 99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~~l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL-EKLSLANNNLTELPAGLLNGLENLDTL 177 (290)
T ss_dssp CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECTTSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC-CEEECCCCcCCccCHHHhcCcCCCCEE
Confidence 9999999999999998777889999999999999999984444445678899 999999999996666677889999999
Q ss_pred EecCCcCCCccCC------CCceEEccCCcceeec
Q 039116 162 DISENKLSDDIPN------SLENLNLSFNHFEGEV 190 (248)
Q Consensus 162 ~l~~n~i~~~~p~------~L~~L~l~~n~l~~~~ 190 (248)
++++|+++ .+|. .++.+++++|++....
T Consensus 178 ~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp ECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred ECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 99999998 4553 3899999999987543
No 62
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=6.3e-22 Score=174.51 Aligned_cols=215 Identities=18% Similarity=0.191 Sum_probs=157.4
Q ss_pred chhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCcccccc-CCcccCC
Q 039116 3 PEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGE-IPPSIGN 81 (248)
Q Consensus 3 p~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~ 81 (248)
|..++.++ +|++|++++|.+++..|+.|.++++|++|++++|.++ .+|.. .+++|++|++++|.+.+. .|..++.
T Consensus 69 ~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~ 144 (562)
T 3a79_B 69 MPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGN 144 (562)
T ss_dssp GGGTTTCT-TCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGG
T ss_pred hhhhccCC-CccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcc
Confidence 35777888 9999999999999777889999999999999999999 45554 789999999999998863 4578999
Q ss_pred CCCccEEEcccccccccCCccccCCCCC--cEEEcccCcC--ccccchhhhhc---------------------------
Q 039116 82 LTLLTTLNFGENMLEESIPSSLGKCQNI--ALLDLSNNNL--SGTIPTEVIRL--------------------------- 130 (248)
Q Consensus 82 l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~i--~~~~~~~~~~~--------------------------- 130 (248)
+++|++|++++|.++.. .+..+++| +.+++.+|.+ ++..|..+..+
T Consensus 145 l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~ 221 (562)
T 3a79_B 145 LTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221 (562)
T ss_dssp CTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEE
T ss_pred cCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccc
Confidence 99999999999998763 34445555 9999999987 43333222211
Q ss_pred ------------------------------------------------------cccccEEEcccCcCCCCCCcCc----
Q 039116 131 ------------------------------------------------------SSLSIYLDLSQNQLNGPFPSNF---- 152 (248)
Q Consensus 131 ------------------------------------------------------~~ll~~L~l~~n~i~~~~~~~~---- 152 (248)
..+ ++|++++|.+++..|..+
T Consensus 222 ~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~ip~~~~~~~ 300 (562)
T 3a79_B 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV-EYLNIYNLTITERIDREEFTYS 300 (562)
T ss_dssp EEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSE-EEEEEEEEEECSCCCCCCCCCC
T ss_pred eEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccc-cEEEEeccEeeccccchhhhcc
Confidence 145 778888888776565544
Q ss_pred -------------------------------------------------cCCCCccEEEecCCcCCCccCC------CCc
Q 039116 153 -------------------------------------------------GVLKNLGVIDISENKLSDDIPN------SLE 177 (248)
Q Consensus 153 -------------------------------------------------~~~~~L~~L~l~~n~i~~~~p~------~L~ 177 (248)
..+++|+.|++++|++++..|. .|+
T Consensus 301 ~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 380 (562)
T 3a79_B 301 ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380 (562)
T ss_dssp SCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCC
T ss_pred cccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCC
Confidence 4567788888888887765542 378
Q ss_pred eEEccCCcceeec--c-CCcccCCCceeeecCCccce----------eccCccccCCCCcc
Q 039116 178 NLNLSFNHFEGEV--P-IKGVFNNSSAISLDGNDNLC----------GGISELHLSTCSIK 225 (248)
Q Consensus 178 ~L~l~~n~l~~~~--~-~~~~~~~l~~l~l~~n~~~~----------~~l~~l~~~~c~~~ 225 (248)
+|++++|++++.. + .+..+++|+.|++++|.-.. ..+..+++++|.+.
T Consensus 381 ~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 441 (562)
T 3a79_B 381 TLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441 (562)
T ss_dssp EEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC
T ss_pred EEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC
Confidence 8888888887632 2 45677788888888774321 14445666777664
No 63
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=7.7e-23 Score=179.63 Aligned_cols=183 Identities=17% Similarity=0.214 Sum_probs=144.8
Q ss_pred chhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCcccccc-CCcccCC
Q 039116 3 PEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGE-IPPSIGN 81 (248)
Q Consensus 3 p~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~ 81 (248)
|..++++. +|++|++++|.+.+..|..|.++++|++|++++|.+++..+..+.++++|++|++++|.+.+. .+..++.
T Consensus 43 ~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 121 (549)
T 2z81_A 43 HGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121 (549)
T ss_dssp SSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTT
T ss_pred hhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhc
Confidence 56778888 999999999999987788999999999999999999977777799999999999999998753 4677899
Q ss_pred CCCccEEEccccc-ccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcC-ccCCCCcc
Q 039116 82 LTLLTTLNFGENM-LEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSN-FGVLKNLG 159 (248)
Q Consensus 82 l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~-~~~~~~L~ 159 (248)
+++|++|++++|. +....+..+..+++|++|++.+|.+++..|..++.++.+ ++|++++|.+. ..+.. +..+++|+
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~l~~n~~~-~~~~~~~~~l~~L~ 199 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI-HHLTLHLSESA-FLLEIFADILSSVR 199 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE-EEEEEECSBST-THHHHHHHSTTTBS
T ss_pred cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccC-ceEecccCccc-ccchhhHhhccccc
Confidence 9999999999998 444334678899999999999999987778778887777 78888888776 33333 24577788
Q ss_pred EEEecCCcCCCcc---------CCCCceEEccCCccee
Q 039116 160 VIDISENKLSDDI---------PNSLENLNLSFNHFEG 188 (248)
Q Consensus 160 ~L~l~~n~i~~~~---------p~~L~~L~l~~n~l~~ 188 (248)
.|++++|++++.. ...++.|++++|.+++
T Consensus 200 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp EEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred EEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 8888888876521 1335666666555543
No 64
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.1e-21 Score=155.91 Aligned_cols=159 Identities=25% Similarity=0.283 Sum_probs=105.6
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+++.|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 66777777777766666666677777777777777766666666667777777777777665555566667777777777
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCc
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDD 171 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 171 (248)
+|.+++..+..+..+++|+.|++.+|++++..+..+..++++ ++|++++|.+++..+..+..+++|+.|++++|+++..
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL-QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC-CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 777765444456666777777777777763333345566666 6777777777655555666667777777777776643
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=3.2e-22 Score=176.31 Aligned_cols=197 Identities=25% Similarity=0.250 Sum_probs=161.1
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCC--ChhhcCCccccEEEecCccccccCCcccCCCCCccEEE
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQI--PGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLN 89 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 89 (248)
+|+.|++++|.+....+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+ .+..+++|++|+
T Consensus 326 ~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~ 402 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLD 402 (570)
T ss_dssp SCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEE
T ss_pred ccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEE
Confidence 555555555555433332 56788999999999888543 6778889999999999998885444 488899999999
Q ss_pred cccccccccCC-ccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCC-CCCCcCccCCCCccEEEecCCc
Q 039116 90 FGENMLEESIP-SSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLN-GPFPSNFGVLKNLGVIDISENK 167 (248)
Q Consensus 90 l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~ 167 (248)
+.+|.+.+..+ ..+..+++|+.|++.+|.+.+..+..+..++++ ++|++++|.++ +..|..+..+++|+.|++++|+
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC-cEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 99999887555 467889999999999999987777778889999 99999999987 4678889999999999999999
Q ss_pred CCCccCC------CCceEEccCCcceeecc-CCcccCCCceeeecCCcccee
Q 039116 168 LSDDIPN------SLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNLCG 212 (248)
Q Consensus 168 i~~~~p~------~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~~~ 212 (248)
+++..|. .|++|++++|++++.++ .+..+++|+.+++++|++.|.
T Consensus 482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 9876553 48999999999998876 567889999999999987774
No 66
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=4.4e-21 Score=159.19 Aligned_cols=81 Identities=33% Similarity=0.534 Sum_probs=47.9
Q ss_pred hhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCc
Q 039116 6 VGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLL 85 (248)
Q Consensus 6 ~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 85 (248)
+..++ +|++|++++|.+.. .+. +.++++|++|++++|.++. . +++..+++|++|++++|.+... +. +..+++|
T Consensus 62 ~~~~~-~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L 134 (347)
T 4fmz_A 62 IEYLT-NLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKM 134 (347)
T ss_dssp GGGCT-TCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTC
T ss_pred hhhcC-CccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCce
Confidence 45555 77777777777663 333 6666777777777776663 2 2466666666776666665532 21 4445555
Q ss_pred cEEEcccc
Q 039116 86 TTLNFGEN 93 (248)
Q Consensus 86 ~~L~l~~n 93 (248)
+.|++++|
T Consensus 135 ~~L~l~~n 142 (347)
T 4fmz_A 135 YSLNLGAN 142 (347)
T ss_dssp CEEECTTC
T ss_pred eEEECCCC
Confidence 55555544
No 67
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=1.8e-20 Score=155.54 Aligned_cols=211 Identities=23% Similarity=0.348 Sum_probs=126.7
Q ss_pred hhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCc
Q 039116 6 VGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLL 85 (248)
Q Consensus 6 ~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 85 (248)
+..++ +|++|++++|.+.. + +.+.++++|++|++++|.++.. +. +..+++|++|++++|...... ..+..+++|
T Consensus 84 ~~~l~-~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L 157 (347)
T 4fmz_A 84 LSNLV-KLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGL 157 (347)
T ss_dssp GTTCT-TCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTC
T ss_pred hhcCC-cCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCC
Confidence 56666 88888888888773 3 3577888888888888887743 32 666777777777777543222 235556666
Q ss_pred cEEEcccccccccCCccccCCCCCcEEEcccCcCccccch---------------------hhhhccccccEEEcccCcC
Q 039116 86 TTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPT---------------------EVIRLSSLSIYLDLSQNQL 144 (248)
Q Consensus 86 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~---------------------~~~~~~~ll~~L~l~~n~i 144 (248)
++|++.+|.+....+ +..+++|+.|++.+|.+. .++. .+..++.+ ++|++++|.+
T Consensus 158 ~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L-~~L~l~~n~l 233 (347)
T 4fmz_A 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISPLASLTSLHYFTAYVNQITDITPVANMTRL-NSLKIGNNKI 233 (347)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTC-CEEECCSSCC
T ss_pred cEEEecCCCcCCchh--hccCCCCCEEEccCCccc-ccccccCCCccceeecccCCCCCCchhhcCCcC-CEEEccCCcc
Confidence 666666655543211 444555555555555544 2221 14455556 6666666666
Q ss_pred CCCCCcCccCCCCccEEEecCCcCCCcc----CCCCceEEccCCcceeeccCCcccCCCceeeecCCccc---------e
Q 039116 145 NGPFPSNFGVLKNLGVIDISENKLSDDI----PNSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDNL---------C 211 (248)
Q Consensus 145 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~----p~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~---------~ 211 (248)
++. +. +..+++|+.|++++|.+++.. .+.|++|++++|++++. +....+++|+.|++++|... +
T Consensus 234 ~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 234 TDL-SP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp CCC-GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred CCC-cc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence 633 22 566667777777777665421 13477777777777654 33566677777777777432 1
Q ss_pred eccCccccCCCCcccccc
Q 039116 212 GGISELHLSTCSIKESKQ 229 (248)
Q Consensus 212 ~~l~~l~~~~c~~~~~~~ 229 (248)
..+..+++++|++.....
T Consensus 311 ~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 311 TNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp TTCSEEECCSSSCCCCGG
T ss_pred ccCCEEEccCCccccccC
Confidence 245566777777665543
No 68
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=2.3e-20 Score=160.96 Aligned_cols=187 Identities=30% Similarity=0.394 Sum_probs=94.9
Q ss_pred hhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCc
Q 039116 6 VGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLL 85 (248)
Q Consensus 6 ~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 85 (248)
+..++ +|+.|++++|.+... ..+.++++|++|++++|.+.+..+ +..+++|+.|++++|.+.+. +.+..+++|
T Consensus 173 ~~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 245 (466)
T 1o6v_A 173 LANLT-TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNL 245 (466)
T ss_dssp GTTCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred hccCC-CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCC
Confidence 44455 666677766666532 235666666666666666664333 44455666666666655432 234455555
Q ss_pred cEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecC
Q 039116 86 TTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISE 165 (248)
Q Consensus 86 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 165 (248)
+.|++++|.+++..+ +..+++|+.|++.+|.++ ..+. +..++.+ ++|++++|.+++..+ +..+++|+.|++++
T Consensus 246 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L-~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 246 TDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP-LAGLTAL-TNLELNENQLEDISP--ISNLKNLTYLTLYF 318 (466)
T ss_dssp SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG-GTTCTTC-SEEECCSSCCSCCGG--GGGCTTCSEEECCS
T ss_pred CEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc-ccCCCcc-CeEEcCCCcccCchh--hcCCCCCCEEECcC
Confidence 555555555554222 445555555555555554 2222 4444555 555555555543222 34455555555555
Q ss_pred CcCCCccC----CCCceEEccCCcceeeccCCcccCCCceeeecCC
Q 039116 166 NKLSDDIP----NSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGN 207 (248)
Q Consensus 166 n~i~~~~p----~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n 207 (248)
|++++..| +.|++|++++|++++. +....+++|+.|++++|
T Consensus 319 n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 319 NNISDISPVSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHN 363 (466)
T ss_dssp SCCSCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSS
T ss_pred CcCCCchhhccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCC
Confidence 55544322 2344455555544443 22334444444444444
No 69
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=7.1e-21 Score=146.94 Aligned_cols=174 Identities=26% Similarity=0.272 Sum_probs=146.2
Q ss_pred ccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEccc
Q 039116 13 LKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGE 92 (248)
Q Consensus 13 L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 92 (248)
-+.++.+++.++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 9 ~~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 9 GTTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 457888888877 555544 36899999999999977777788899999999999999866666788999999999999
Q ss_pred ccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCcc
Q 039116 93 NMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDI 172 (248)
Q Consensus 93 n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 172 (248)
|.+++..+..+..+++|+.|++.+|++++..+..+..++++ ++|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL-KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC-CEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence 99997666668899999999999999984444456788899 99999999999766666888999999999999998654
Q ss_pred CCCCceEEccCCcceeecc
Q 039116 173 PNSLENLNLSFNHFEGEVP 191 (248)
Q Consensus 173 p~~L~~L~l~~n~l~~~~~ 191 (248)
| .+++|++..|+++|.+|
T Consensus 165 ~-~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 165 P-GIRYLSEWINKHSGVVR 182 (208)
T ss_dssp T-TTHHHHHHHHHCTTTBB
T ss_pred C-CHHHHHHHHHhCCceee
Confidence 4 68999999999998887
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=3.2e-21 Score=158.38 Aligned_cols=194 Identities=22% Similarity=0.220 Sum_probs=136.1
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
.++..+++++.+.......+..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 45666777777664455556677899999999999998878899999999999999999985543 8889999999999
Q ss_pred cccccccCCc----------------cccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCc-cC
Q 039116 92 ENMLEESIPS----------------SLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNF-GV 154 (248)
Q Consensus 92 ~n~~~~~~~~----------------~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~-~~ 154 (248)
+|.+++..+. ....+++|+.|++.+|++++..+..++.++.+ ++|++++|.+++..+..+ ..
T Consensus 89 ~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~ 167 (317)
T 3o53_A 89 NNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAAS 167 (317)
T ss_dssp SSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSE-EEEECTTSCCCEEEGGGGGGG
T ss_pred CCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCC-CEEECCCCCCCcccHHHHhhc
Confidence 9987742110 01223456666666666664334455566666 777777777765444444 35
Q ss_pred CCCccEEEecCCcCCCcc----CCCCceEEccCCcceeeccCCcccCCCceeeecCCc
Q 039116 155 LKNLGVIDISENKLSDDI----PNSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGND 208 (248)
Q Consensus 155 ~~~L~~L~l~~n~i~~~~----p~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~ 208 (248)
+++|+.|++++|.+++.. ...|++|++++|++++..+.+..+++|+.|++++|.
T Consensus 168 l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp TTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred cCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc
Confidence 677777777777776421 234777777777777666656667777777777773
No 71
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=2.9e-20 Score=160.33 Aligned_cols=192 Identities=29% Similarity=0.393 Sum_probs=163.7
Q ss_pred hhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCC
Q 039116 5 AVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTL 84 (248)
Q Consensus 5 ~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 84 (248)
.+..++ +|++|++++|.+.+..+ ++.+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++
T Consensus 194 ~l~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 266 (466)
T 1o6v_A 194 VLAKLT-NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTK 266 (466)
T ss_dssp GGGGCT-TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred hhccCC-CCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCC
Confidence 466777 99999999999986544 78899999999999999853 467889999999999999885543 888999
Q ss_pred ccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEec
Q 039116 85 LTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDIS 164 (248)
Q Consensus 85 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~ 164 (248)
|+.|++++|.+++..+ +..+++|+.|++.+|++++ .+. +..++++ ++|++++|.+++..| +..+++|+.|+++
T Consensus 267 L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L-~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLED-ISP-ISNLKNL-TYLTLYFNNISDISP--VSSLTKLQRLFFY 339 (466)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC-CGG-GGGCTTC-SEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred CCEEECCCCccCcccc--ccCCCccCeEEcCCCcccC-chh-hcCCCCC-CEEECcCCcCCCchh--hccCccCCEeECC
Confidence 9999999999986433 8889999999999999984 443 7788999 999999999986655 6789999999999
Q ss_pred CCcCCCccC----CCCceEEccCCcceeeccCCcccCCCceeeecCCccce
Q 039116 165 ENKLSDDIP----NSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDNLC 211 (248)
Q Consensus 165 ~n~i~~~~p----~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~ 211 (248)
+|.+++... ..|++|++++|++++..| ...+++|+.+++++|++..
T Consensus 340 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 340 NNKVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCccCCchhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 999986422 459999999999999888 7889999999999996544
No 72
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=6.2e-20 Score=157.89 Aligned_cols=184 Identities=21% Similarity=0.218 Sum_probs=117.2
Q ss_pred hhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCC
Q 039116 4 EAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLT 83 (248)
Q Consensus 4 ~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 83 (248)
..++++. +|++|++++|.+.+ .| .+..+++|++|++++|++++. + +..+++|++|++++|.+++. + ++.++
T Consensus 36 ~~~~~l~-~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 36 ISEEQLA-TLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp EEHHHHT-TCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred cChhHcC-CCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 3456666 88888888888874 34 577888888888888888753 3 66777888888888877753 2 67777
Q ss_pred CccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhcccc---------------------ccEEEcccC
Q 039116 84 LLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSL---------------------SIYLDLSQN 142 (248)
Q Consensus 84 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~l---------------------l~~L~l~~n 142 (248)
+|++|++++|.+++ .+ +..+++|+.|++.+|++++ ++ ++.++.+ +++|++++|
T Consensus 107 ~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180 (457)
T ss_dssp TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS
T ss_pred cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC
Confidence 78888888777775 33 6677777777777777763 22 3444444 044444444
Q ss_pred cCCCCCCcCccCCCCccEEEecCCcCCCcc---CCCCceEEccCCcceeeccCCcccCCCceeeecCC
Q 039116 143 QLNGPFPSNFGVLKNLGVIDISENKLSDDI---PNSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGN 207 (248)
Q Consensus 143 ~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~---p~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n 207 (248)
.+++ .| ++.+++|+.|++++|.+++.. .+.|++|++++|++++ +| ...+++|+.|++++|
T Consensus 181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 181 KITE-LD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CCCC-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSS
T ss_pred ccce-ec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCC
Confidence 4443 22 444555555555555554321 1236666666666665 33 455666666666666
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=7.1e-21 Score=150.04 Aligned_cols=175 Identities=15% Similarity=0.169 Sum_probs=149.5
Q ss_pred hhhcccCCccEEEccccc-cccCchhhhhcCcCCcEEEcCC-CcCCCCCChhhcCCccccEEEecCccccccCCcccCCC
Q 039116 5 AVGSLSTQLKILSVENNQ-FFGNIPSGLRNLVNLELLHLGD-NQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNL 82 (248)
Q Consensus 5 ~~~~~~~~L~~L~l~~~~-i~~~~p~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 82 (248)
.+++++ +|++|++++|. +....+..|.++++|++|++++ |.++...+..|.++++|++|++++|.+.+ +|. +..+
T Consensus 50 ~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l 126 (239)
T 2xwt_C 50 AFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKV 126 (239)
T ss_dssp TTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTC
T ss_pred HccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccc
Confidence 566777 99999999997 8866667899999999999999 99997777889999999999999999985 565 8888
Q ss_pred CCcc---EEEcccc-cccccCCccccCCCCCc-EEEcccCcCccccchhhhhccccccEEEcccCc-CCCCCCcCccCC-
Q 039116 83 TLLT---TLNFGEN-MLEESIPSSLGKCQNIA-LLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQ-LNGPFPSNFGVL- 155 (248)
Q Consensus 83 ~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~-i~~~~~~~~~~~- 155 (248)
++|+ .|++++| .++...+..+..+++|+ .+++.+|+++ .+|......+.+ ++|++++|. +++..+..+..+
T Consensus 127 ~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L-~~L~L~~n~~l~~i~~~~~~~l~ 204 (239)
T 2xwt_C 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL-DAVYLNKNKYLTVIDKDAFGGVY 204 (239)
T ss_dssp CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEE-EEEECTTCTTCCEECTTTTTTCS
T ss_pred cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCC-CEEEcCCCCCcccCCHHHhhccc
Confidence 8888 9999999 89876667799999999 9999999998 677665555778 999999995 986667788888
Q ss_pred CCccEEEecCCcCCCccC---CCCceEEccCC
Q 039116 156 KNLGVIDISENKLSDDIP---NSLENLNLSFN 184 (248)
Q Consensus 156 ~~L~~L~l~~n~i~~~~p---~~L~~L~l~~n 184 (248)
++|+.|++++|++++..+ ..++.|++.++
T Consensus 205 ~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 205 SGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp BCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred cCCcEEECCCCccccCChhHhccCceeeccCc
Confidence 999999999999985333 34888888776
No 74
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=6.8e-22 Score=165.27 Aligned_cols=222 Identities=19% Similarity=0.241 Sum_probs=169.3
Q ss_pred hhhcccCCccEEEccccccccCch----hhhhcCc-CCcEEEcCCCcCCCCCChhhcCC-----ccccEEEecCcccccc
Q 039116 5 AVGSLSTQLKILSVENNQFFGNIP----SGLRNLV-NLELLHLGDNQFKGQIPGTIGDL-----LKLQRLTLQGNKFLGE 74 (248)
Q Consensus 5 ~~~~~~~~L~~L~l~~~~i~~~~p----~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~ 74 (248)
.+...+++|++|++++|.+....+ ..|.+++ +|++|++++|.+++..+..+..+ ++|++|++++|.+.+.
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 444556479999999999987766 7788898 89999999999998777777765 8999999999999866
Q ss_pred CCcc----cCCC-CCccEEEcccccccccCCccc----cC-CCCCcEEEcccCcCccccc----hhhhhcc-ccccEEEc
Q 039116 75 IPPS----IGNL-TLLTTLNFGENMLEESIPSSL----GK-CQNIALLDLSNNNLSGTIP----TEVIRLS-SLSIYLDL 139 (248)
Q Consensus 75 ~~~~----l~~l-~~L~~L~l~~n~~~~~~~~~l----~~-l~~L~~L~l~~n~i~~~~~----~~~~~~~-~ll~~L~l 139 (248)
.+.. +..+ ++|++|++++|.++...+..+ .. .++|++|++.+|.+++... ..+...+ .+ ++|++
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L-~~L~L 174 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV-NSLNL 174 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC-CEEEC
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc-cEeee
Confidence 5553 3444 899999999999987555443 33 3689999999999985333 3334454 77 99999
Q ss_pred ccCcCCCCCCcCc----cCC-CCccEEEecCCcCCCc-----------cCCCCceEEccCCcceeecc-----CCcccCC
Q 039116 140 SQNQLNGPFPSNF----GVL-KNLGVIDISENKLSDD-----------IPNSLENLNLSFNHFEGEVP-----IKGVFNN 198 (248)
Q Consensus 140 ~~n~i~~~~~~~~----~~~-~~L~~L~l~~n~i~~~-----------~p~~L~~L~l~~n~l~~~~~-----~~~~~~~ 198 (248)
++|.+++..+..+ ... ++|+.|++++|.+++. .+..|++|++++|++++... ....+++
T Consensus 175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence 9999986555433 345 5999999999999852 13579999999999986533 4567788
Q ss_pred CceeeecCCc--------------c--ceeccCccccCCCCcccc
Q 039116 199 SSAISLDGND--------------N--LCGGISELHLSTCSIKES 227 (248)
Q Consensus 199 l~~l~l~~n~--------------~--~~~~l~~l~~~~c~~~~~ 227 (248)
|+.|++++|. . -...+..++++++.+...
T Consensus 255 L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 9999999985 0 112466777887776544
No 75
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=9.2e-21 Score=162.89 Aligned_cols=210 Identities=22% Similarity=0.273 Sum_probs=135.0
Q ss_pred CchhhhcccCCccEEEccccccccCchhhhhcCcCC-------------cEEEcCCCcCCCCCChhh-------------
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNL-------------ELLHLGDNQFKGQIPGTI------------- 55 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L-------------~~L~l~~~~i~~~~~~~~------------- 55 (248)
+|++++++. +|++|++++|.+.+..|..++++.+| ++|++++|.+++ .|...
T Consensus 26 iP~~i~~L~-~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~~~~L~~L~l~~n~l 103 (454)
T 1jl5_A 26 MPVEAENVK-SKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPELPPHLESLVASCNSL 103 (454)
T ss_dssp --------C-CHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSCCTTCSEEECCSSCC
T ss_pred CChhHhccc-chhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCCcCCCCEEEccCCcC
Confidence 566677776 77777777777766666666555432 555555555552 22210
Q ss_pred ----cCCccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhcc
Q 039116 56 ----GDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLS 131 (248)
Q Consensus 56 ----~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~ 131 (248)
...++|++|++++|.+.+. +. ..++|++|++++|.+++ +| .+..+++|+.|++.+|+++ .+|... .
T Consensus 104 ~~lp~~~~~L~~L~l~~n~l~~l-~~---~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~~---~ 173 (454)
T 1jl5_A 104 TELPELPQSLKSLLVDNNNLKAL-SD---LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLP---P 173 (454)
T ss_dssp SSCCCCCTTCCEEECCSSCCSCC-CS---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCCC---T
T ss_pred CccccccCCCcEEECCCCccCcc-cC---CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCCc---c
Confidence 0123444555555544321 11 11578888888888886 55 5888889999999999887 455433 4
Q ss_pred ccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCC--ccCCCCceEEccCCcceeeccCCcccCCCceeeecCCcc
Q 039116 132 SLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSD--DIPNSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDN 209 (248)
Q Consensus 132 ~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~--~~p~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~ 209 (248)
++ ++|++++|.+++ .| .++.+++|+.|++++|++++ ..+..|++|++++|.++. +|.+..+++|+.+++++|.-
T Consensus 174 ~L-~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 174 SL-EFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE-LPELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp TC-CEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCC
T ss_pred cc-cEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCc-ccccCCCCCCCEEECCCCcC
Confidence 66 889999999885 55 57889999999999999986 344578999999998884 44567788888888888732
Q ss_pred c-----eeccCccccCCCCcccc
Q 039116 210 L-----CGGISELHLSTCSIKES 227 (248)
Q Consensus 210 ~-----~~~l~~l~~~~c~~~~~ 227 (248)
. ..++..+++++|.+...
T Consensus 250 ~~l~~~~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 250 KTLPDLPPSLEALNVRDNYLTDL 272 (454)
T ss_dssp SSCCSCCTTCCEEECCSSCCSCC
T ss_pred CcccccccccCEEECCCCccccc
Confidence 1 13555666666666543
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=4.8e-20 Score=150.75 Aligned_cols=173 Identities=24% Similarity=0.348 Sum_probs=147.1
Q ss_pred hhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCC
Q 039116 5 AVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTL 84 (248)
Q Consensus 5 ~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 84 (248)
.+..++ +|++|++++|.+.. .+. +.++++|++|++++|.+++. ..+..+++|++|++++|.+.+. + .+..+++
T Consensus 58 ~~~~l~-~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~ 130 (308)
T 1h6u_A 58 GVQYLN-NLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSN 130 (308)
T ss_dssp TGGGCT-TCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTT
T ss_pred hhhccC-CCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCC
Confidence 567777 99999999999984 444 99999999999999999853 3688999999999999999854 3 3889999
Q ss_pred ccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEec
Q 039116 85 LTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDIS 164 (248)
Q Consensus 85 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~ 164 (248)
|+.|++++|.+++. +. +..+++|+.|++.+|.++ .++. +..++++ ++|++++|.+++..+ +..+++|+.|+++
T Consensus 131 L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 131 LQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVS-DLTP-LANLSKL-TTLKADDNKISDISP--LASLPNLIEVHLK 203 (308)
T ss_dssp CCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTC-CEEECCSSCCCCCGG--GGGCTTCCEEECT
T ss_pred CCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCC-CChh-hcCCCCC-CEEECCCCccCcChh--hcCCCCCCEEEcc
Confidence 99999999999864 33 888999999999999998 4554 7888999 999999999985433 7889999999999
Q ss_pred CCcCCCccC----CCCceEEccCCcceeecc
Q 039116 165 ENKLSDDIP----NSLENLNLSFNHFEGEVP 191 (248)
Q Consensus 165 ~n~i~~~~p----~~L~~L~l~~n~l~~~~~ 191 (248)
+|++++..+ +.|++|++++|++++...
T Consensus 204 ~N~l~~~~~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 204 NNQISDVSPLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TSCCCBCGGGTTCTTCCEEEEEEEEEECCCE
T ss_pred CCccCccccccCCCCCCEEEccCCeeecCCe
Confidence 999986543 459999999999986433
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=2.5e-20 Score=161.56 Aligned_cols=196 Identities=22% Similarity=0.237 Sum_probs=147.6
Q ss_pred CchhhhhcCc----CCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCc
Q 039116 26 NIPSGLRNLV----NLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPS 101 (248)
Q Consensus 26 ~~p~~~~~l~----~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 101 (248)
.+|..+..+. +|+.|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~ 98 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG 98 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC
Confidence 4566665544 89999999999998888899999999999999999986554 88899999999988887642211
Q ss_pred ----------------cccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCcc-CCCCccEEEec
Q 039116 102 ----------------SLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFG-VLKNLGVIDIS 164 (248)
Q Consensus 102 ----------------~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~-~~~~L~~L~l~ 164 (248)
....+++|+.|++.+|.+++..|..++.++.+ ++|++++|.+++..|..+. .+++|+.|+++
T Consensus 99 ~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSE-EEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCC-CEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 01234667778888888775556667777888 8888888888866666665 67888888888
Q ss_pred CCcCCCcc----CCCCceEEccCCcceeeccCCcccCCCceeeecCCcccee---------ccCccccCCCCcc
Q 039116 165 ENKLSDDI----PNSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDNLCG---------GISELHLSTCSIK 225 (248)
Q Consensus 165 ~n~i~~~~----p~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~---------~l~~l~~~~c~~~ 225 (248)
+|.+++.. ...|++|++++|.+++.++.+..+++|+.|++++|. +.+ .+..+++++|++.
T Consensus 178 ~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 178 YNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCc
Confidence 88887533 245888888888888877777778888888888884 332 3445666666654
No 78
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.2e-20 Score=145.67 Aligned_cols=162 Identities=24% Similarity=0.235 Sum_probs=141.0
Q ss_pred cCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEE
Q 039116 10 STQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLN 89 (248)
Q Consensus 10 ~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 89 (248)
++++++|++++|.+.+..+..|.++++|++|++++|+++...+..|..+++|++|++++|.++...+..+..+++|+.|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 34899999999999976677789999999999999999977677788999999999999999977667789999999999
Q ss_pred cccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCC
Q 039116 90 FGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLS 169 (248)
Q Consensus 90 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 169 (248)
+++|.+++..+..+..+++|+.|++.+|.+++..+..+..++++ ++|++++|.+. +.++.|+.|+++.|.++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L-~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL-QYIWLHDNPWD-------CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSCCBC-------CCTTTTHHHHHHHHHCT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc-cEEEecCCCee-------cCCCCHHHHHHHHHhCC
Confidence 99999998666678999999999999999985444446788999 99999999776 35678999999999999
Q ss_pred CccCCCCceE
Q 039116 170 DDIPNSLENL 179 (248)
Q Consensus 170 ~~~p~~L~~L 179 (248)
+.+|..+..+
T Consensus 179 g~ip~~~~~l 188 (208)
T 2o6s_A 179 GVVRNSAGSV 188 (208)
T ss_dssp TTBBCTTSSB
T ss_pred ceeeccCccc
Confidence 9999876654
No 79
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=3.1e-19 Score=153.52 Aligned_cols=181 Identities=23% Similarity=0.227 Sum_probs=128.0
Q ss_pred hhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCC
Q 039116 5 AVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTL 84 (248)
Q Consensus 5 ~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 84 (248)
.++.++ +|++|++++|.+++. | ++.+++|++|++++|.+++. + +.++++|++|++++|.+.+. + ++.+++
T Consensus 59 ~l~~l~-~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~ 128 (457)
T 3bz5_A 59 GIEKLT-GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPL 128 (457)
T ss_dssp TGGGCT-TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTT
T ss_pred hhcccC-CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCc
Confidence 466666 788888888887743 3 67777778888877777753 2 66677777777777776643 2 566666
Q ss_pred ccEEEcccccccccCC-------------------ccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCC
Q 039116 85 LTTLNFGENMLEESIP-------------------SSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLN 145 (248)
Q Consensus 85 L~~L~l~~n~~~~~~~-------------------~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~ 145 (248)
|+.|++++|.+++... -.+..+++|+.|++.+|+++ .++ ++.++.+ +.|++++|.++
T Consensus 129 L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~-~l~--l~~l~~L-~~L~l~~N~l~ 204 (457)
T 3bz5_A 129 LTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT-ELD--VSQNKLL-NRLNCDTNNIT 204 (457)
T ss_dssp CCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCC-CCC--CTTCTTC-CEEECCSSCCS
T ss_pred CCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccc-eec--cccCCCC-CEEECcCCcCC
Confidence 6666666666654210 02455677888888888887 454 6778888 89999999998
Q ss_pred CCCCcCccCCCCccEEEecCCcCCCccC----CCCceEEccCCcceeeccCCcccCCCceeeec
Q 039116 146 GPFPSNFGVLKNLGVIDISENKLSDDIP----NSLENLNLSFNHFEGEVPIKGVFNNSSAISLD 205 (248)
Q Consensus 146 ~~~~~~~~~~~~L~~L~l~~n~i~~~~p----~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~ 205 (248)
+. .++.+++|+.|++++|++++ +| +.|++|++++|++++..+ ..+++|+.++++
T Consensus 205 ~~---~l~~l~~L~~L~Ls~N~l~~-ip~~~l~~L~~L~l~~N~l~~~~~--~~l~~L~~L~l~ 262 (457)
T 3bz5_A 205 KL---DLNQNIQLTFLDCSSNKLTE-IDVTPLTQLTYFDCSVNPLTELDV--STLSKLTTLHCI 262 (457)
T ss_dssp CC---CCTTCTTCSEEECCSSCCSC-CCCTTCTTCSEEECCSSCCSCCCC--TTCTTCCEEECT
T ss_pred ee---ccccCCCCCEEECcCCcccc-cCccccCCCCEEEeeCCcCCCcCH--HHCCCCCEEecc
Confidence 54 37888999999999999986 44 348999999999987643 455555544433
No 80
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=1.1e-20 Score=168.03 Aligned_cols=176 Identities=23% Similarity=0.251 Sum_probs=125.7
Q ss_pred ccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEE
Q 039116 9 LSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTL 88 (248)
Q Consensus 9 ~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 88 (248)
+++++++|+|++|.|+...+.+|.++++|++|++++|+|+.+.+++|.++++|++|++++|+++...++.|..+++|++|
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 34577888888888876666778888888888888888887777778888888888888888776666677888888888
Q ss_pred EcccccccccCCccccCCCCCcEEEcccCcCcc-ccchhhhhccccccEEEcccCcCCCCCCcCccCCCC----ccEEEe
Q 039116 89 NFGENMLEESIPSSLGKCQNIALLDLSNNNLSG-TIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKN----LGVIDI 163 (248)
Q Consensus 89 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~----L~~L~l 163 (248)
++++|.+++..+..++.+++|+.|++.+|.++. ..|..++.++.+ ++|++++|.+++..+..+..+.+ ...+++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-CEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhh-hhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 888888877555667888888888888887763 345666777777 78888888887655655543322 346777
Q ss_pred cCCcCCCccCCC-----CceEEccCCc
Q 039116 164 SENKLSDDIPNS-----LENLNLSFNH 185 (248)
Q Consensus 164 ~~n~i~~~~p~~-----L~~L~l~~n~ 185 (248)
+.|.++...+.. +..+++.+|.
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNF 235 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred ccCcccccCcccccchhhhhhhhhccc
Confidence 777776433322 4455555553
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=2.1e-21 Score=160.38 Aligned_cols=217 Identities=18% Similarity=0.219 Sum_probs=158.3
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCC-CChhhcCCccccEEEecCccccccCCcccCCCCCccEEEc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQ-IPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNF 90 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 90 (248)
+++.+++++|.+.+..+. +..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+..++.+++|++|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 788888888888755444 55788899999998888754 6667778888999999988877666777888889999999
Q ss_pred ccc-ccccc-CCccccCCCCCcEEEcccC-cCccc-cchhhhhcc-ccccEEEcccCc--CC-CCCCcCccCCCCccEEE
Q 039116 91 GEN-MLEES-IPSSLGKCQNIALLDLSNN-NLSGT-IPTEVIRLS-SLSIYLDLSQNQ--LN-GPFPSNFGVLKNLGVID 162 (248)
Q Consensus 91 ~~n-~~~~~-~~~~l~~l~~L~~L~l~~n-~i~~~-~~~~~~~~~-~ll~~L~l~~n~--i~-~~~~~~~~~~~~L~~L~ 162 (248)
++| .++.. .+..+..+++|++|++.+| .+++. ++..+..++ ++ ++|++++|. ++ +..+..+..+++|+.|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L-~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI-TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC-CEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC-CEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 888 56642 4555677888999999888 77743 566677788 88 889998884 44 23455566788899999
Q ss_pred ecCCc-CCCccC------CCCceEEccCCc-ceeec-cCCcccCCCceeeecCCccc------eeccCccccCCCCcccc
Q 039116 163 ISENK-LSDDIP------NSLENLNLSFNH-FEGEV-PIKGVFNNSSAISLDGNDNL------CGGISELHLSTCSIKES 227 (248)
Q Consensus 163 l~~n~-i~~~~p------~~L~~L~l~~n~-l~~~~-~~~~~~~~l~~l~l~~n~~~------~~~l~~l~~~~c~~~~~ 227 (248)
+++|. +++..+ +.|++|++++|. ++... .....+++|+.|++++|-.- ...++.++++.|.+...
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEESCCCSCCT
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHHHHHHHHhhCcceEEecccCccc
Confidence 99998 554333 458899998885 32211 13566888999999888211 12477888888887766
Q ss_pred ccc
Q 039116 228 KQS 230 (248)
Q Consensus 228 ~~~ 230 (248)
.+.
T Consensus 309 ~~~ 311 (336)
T 2ast_B 309 ARP 311 (336)
T ss_dssp TCS
T ss_pred cCC
Confidence 443
No 82
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=1e-19 Score=141.72 Aligned_cols=154 Identities=22% Similarity=0.278 Sum_probs=124.7
Q ss_pred ccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEccc
Q 039116 13 LKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGE 92 (248)
Q Consensus 13 L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 92 (248)
-+.++++++.++ .+|..+. +.++.|++++|.++...+..|..+++|+.|++++|.+....|..+..+++|++|++++
T Consensus 13 ~~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 13 NNIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CCEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 457888888887 5666554 6788999999988877777888888899999999988877788888888999999999
Q ss_pred ccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCC
Q 039116 93 NMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSD 170 (248)
Q Consensus 93 n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 170 (248)
|.++...+..+..+++|+.|++.+|++++..+..+..++.+ ++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL-NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC-CEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 88887555567888888888888888886666677788888 888888888887666677888888888888888764
No 83
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=1.1e-19 Score=139.13 Aligned_cols=149 Identities=19% Similarity=0.318 Sum_probs=77.8
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+|+.|++++|.+. .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+.+..+..++.+++|+.|+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 5555555555555 333 45555555555555554441 2244555555555555555554445555555555555555
Q ss_pred cccccccCCccccCCCCCcEEEcccCc-CccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCC
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNN-LSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLS 169 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 169 (248)
+|.++...+..+..+++|+.|++.+|. ++ .++ .+..++.+ ++|++++|.+++ .+ .+..+++|+.|++++|++.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L-~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPEL-KSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSC-CEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCC-CEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 555554444555555555555555554 43 333 34555555 555555555553 22 3445555555555555543
No 84
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=2.6e-19 Score=140.28 Aligned_cols=157 Identities=25% Similarity=0.324 Sum_probs=135.7
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
.-+.++.+++.+. .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+....+..+..+++|+.|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 5667899988887 6666554 789999999999998888889999999999999999986666778899999999999
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCc
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDD 171 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 171 (248)
+|.++...+..+..+++|+.|++.+|+++ .+|..+..++++ ++|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL-THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTC-SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCC-CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 99999766667889999999999999998 788888889999 9999999999966667788899999999999998754
Q ss_pred cC
Q 039116 172 IP 173 (248)
Q Consensus 172 ~p 173 (248)
.+
T Consensus 175 c~ 176 (229)
T 3e6j_A 175 CR 176 (229)
T ss_dssp BG
T ss_pred cc
Confidence 43
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=1.6e-20 Score=153.67 Aligned_cols=181 Identities=23% Similarity=0.244 Sum_probs=146.9
Q ss_pred Cchhh--hcccCCccEEEccccccccCch----hhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCcccccc-
Q 039116 2 LPEAV--GSLSTQLKILSVENNQFFGNIP----SGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGE- 74 (248)
Q Consensus 2 lp~~~--~~~~~~L~~L~l~~~~i~~~~p----~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~- 74 (248)
.|..+ ..+. +|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.
T Consensus 107 ~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 185 (310)
T 4glp_A 107 MPPLPLEATGL-ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER 185 (310)
T ss_dssp CCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH
T ss_pred hhhhhhhccCC-CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch
Confidence 34555 5666 99999999999986443 4456799999999999999988888999999999999999987532
Q ss_pred -C--CcccCCCCCccEEEcccccccccCCc----cccCCCCCcEEEcccCcCccccchhhhhc---cccccEEEcccCcC
Q 039116 75 -I--PPSIGNLTLLTTLNFGENMLEESIPS----SLGKCQNIALLDLSNNNLSGTIPTEVIRL---SSLSIYLDLSQNQL 144 (248)
Q Consensus 75 -~--~~~l~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~i~~~~~~~~~~~---~~ll~~L~l~~n~i 144 (248)
. +..+..+++|++|++++|.++. .+. .+..+++|++|++++|.+++..|..++.+ +++ ++|++++|.+
T Consensus 186 ~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L-~~L~Ls~N~l 263 (310)
T 4glp_A 186 GLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSAL-NSLNLSFAGL 263 (310)
T ss_dssp HHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTC-CCEECCSSCC
T ss_pred hhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcC-CEEECCCCCC
Confidence 1 2335789999999999999974 232 24678999999999999996667766666 588 9999999999
Q ss_pred CCCCCcCccCCCCccEEEecCCcCCCc-cC---CCCceEEccCCccee
Q 039116 145 NGPFPSNFGVLKNLGVIDISENKLSDD-IP---NSLENLNLSFNHFEG 188 (248)
Q Consensus 145 ~~~~~~~~~~~~~L~~L~l~~n~i~~~-~p---~~L~~L~l~~n~l~~ 188 (248)
+ .+|..+. ++|+.|++++|++++. .+ +.|++|++++|+++.
T Consensus 264 ~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 264 E-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred C-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCCC
Confidence 9 6677654 8999999999999862 22 359999999999874
No 86
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.7e-19 Score=140.57 Aligned_cols=156 Identities=20% Similarity=0.265 Sum_probs=122.0
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCC-hhhcCCccccEEEecCccccccCCcccCCCCCccEEEc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIP-GTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNF 90 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 90 (248)
.-+.++++++.++ .+|..+. +.++.|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 12 ~~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 12 EGTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 3457888888887 5666543 456888888888886644 45778888888888888888777777888888888888
Q ss_pred ccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCC
Q 039116 91 GENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSD 170 (248)
Q Consensus 91 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 170 (248)
++|.+++..+..+..+++|+.|++.+|++++..|..+..++++ ++|++++|.+++..|..+..+++|+.|++++|++..
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV-RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC-SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC-CEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 8888887666678888888888888888886556667777888 888888888887667788888888888888887764
Q ss_pred c
Q 039116 171 D 171 (248)
Q Consensus 171 ~ 171 (248)
.
T Consensus 168 ~ 168 (220)
T 2v70_A 168 N 168 (220)
T ss_dssp S
T ss_pred C
Confidence 3
No 87
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=1.7e-19 Score=160.38 Aligned_cols=191 Identities=20% Similarity=0.172 Sum_probs=157.6
Q ss_pred cEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcccc
Q 039116 14 KILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGEN 93 (248)
Q Consensus 14 ~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 93 (248)
.+.+-++-+++ .+|..+. +.+++|++++|+|+.+.+.+|.++++|++|++++|.++...++.|..+++|++|++++|
T Consensus 34 ~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 34 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp TEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 35566666676 6776553 47999999999999888889999999999999999999888889999999999999999
Q ss_pred cccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCC-CCcCccCCCCccEEEecCCcCCCcc
Q 039116 94 MLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGP-FPSNFGVLKNLGVIDISENKLSDDI 172 (248)
Q Consensus 94 ~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~i~~~~ 172 (248)
.+++..+.+|..+++|++|++.+|++++..+..++.+++| ++|++++|.++.. .|..++.+++|+.|++++|++++..
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L-~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL-KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC-CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc-CeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 9998667789999999999999999985444457889999 9999999999753 5777889999999999999998655
Q ss_pred CCC----------CceEEccCCcceeeccCCcccCCCceeeecCCc
Q 039116 173 PNS----------LENLNLSFNHFEGEVPIKGVFNNSSAISLDGND 208 (248)
Q Consensus 173 p~~----------L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~ 208 (248)
+.. ...++++.|.++...+.......+..+++.+|.
T Consensus 190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 235 (635)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhccc
Confidence 432 457889999998776644444455667777763
No 88
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=3.4e-20 Score=159.40 Aligned_cols=207 Identities=24% Similarity=0.267 Sum_probs=140.4
Q ss_pred chhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccc-------------cEEEecCc
Q 039116 3 PEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKL-------------QRLTLQGN 69 (248)
Q Consensus 3 p~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L-------------~~L~l~~n 69 (248)
|..+. .. +|+.|++++|.+ +.+|++++++++|++|++++|.+.+..|..+..+.+| ++|++++|
T Consensus 5 p~~~~-~~-~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 5 PRNVS-NT-FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred ccccc-cc-cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence 34443 34 899999999999 6999999999999999999999998899988888765 99999999
Q ss_pred cccccCCcccCCCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCC
Q 039116 70 KFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFP 149 (248)
Q Consensus 70 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~ 149 (248)
.+++ +|. ..++|+.|++++|.+++ +|.. .++|+.|++.+|.++ .++.. .+++ ++|++++|.+++ +|
T Consensus 82 ~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~---~~~L-~~L~L~~n~l~~-lp 147 (454)
T 1jl5_A 82 GLSS-LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL---PPLL-EYLGVSNNQLEK-LP 147 (454)
T ss_dssp CCSC-CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC---CTTC-CEEECCSSCCSS-CC
T ss_pred cccc-CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC---CCCC-CEEECcCCCCCC-Cc
Confidence 9874 343 24789999999999987 5543 378999999999887 44432 1567 899999999985 66
Q ss_pred cCccCCCCccEEEecCCcCCC--ccCCCCceEEccCCcceeeccCCcccCCCceeeecCCcc-----ceeccCccccCCC
Q 039116 150 SNFGVLKNLGVIDISENKLSD--DIPNSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDN-----LCGGISELHLSTC 222 (248)
Q Consensus 150 ~~~~~~~~L~~L~l~~n~i~~--~~p~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~-----~~~~l~~l~~~~c 222 (248)
.++.+++|+.|++++|++++ ..+..|++|++++|++++. +.+..+++|+.+++++|.- ...++..+++++|
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l-~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n 225 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN 225 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS
T ss_pred -ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcC-ccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCC
Confidence 58899999999999999985 2335699999999999874 4577888889998888742 1235667777777
Q ss_pred Cccccc
Q 039116 223 SIKESK 228 (248)
Q Consensus 223 ~~~~~~ 228 (248)
.+...+
T Consensus 226 ~l~~lp 231 (454)
T 1jl5_A 226 ILEELP 231 (454)
T ss_dssp CCSSCC
T ss_pred cCCccc
Confidence 776544
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=5.8e-19 Score=143.21 Aligned_cols=169 Identities=26% Similarity=0.355 Sum_probs=130.6
Q ss_pred hcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCcc
Q 039116 7 GSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLT 86 (248)
Q Consensus 7 ~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 86 (248)
..+. +|+.|++++|.+.. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|.+.+. ..+..+++|+
T Consensus 43 ~~l~-~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 115 (291)
T 1h6t_A 43 NELN-SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLK 115 (291)
T ss_dssp HHHH-TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCC
T ss_pred hhcC-cccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCC
Confidence 4455 78889998888873 33 47888889999999988885433 77888899999998888742 3478888899
Q ss_pred EEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCC
Q 039116 87 TLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISEN 166 (248)
Q Consensus 87 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 166 (248)
.|++++|.++.. ..+..+++|+.|++.+|++++ + ..+..++++ ++|++++|.+++..+ +..+++|+.|++++|
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L-~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKL-DTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTC-SEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCC-CEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 999988888762 567788889999998888873 3 467778888 889999988885444 778888999999988
Q ss_pred cCCCccC----CCCceEEccCCcceee
Q 039116 167 KLSDDIP----NSLENLNLSFNHFEGE 189 (248)
Q Consensus 167 ~i~~~~p----~~L~~L~l~~n~l~~~ 189 (248)
.+++... +.|+.|++++|+++..
T Consensus 189 ~i~~l~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 189 HISDLRALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCCBCGGGTTCTTCSEEEEEEEEEECC
T ss_pred cCCCChhhccCCCCCEEECcCCcccCC
Confidence 8874211 3588888888888753
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=6.3e-21 Score=160.65 Aligned_cols=224 Identities=17% Similarity=0.143 Sum_probs=158.6
Q ss_pred CchhhhcccCCccEEEccccccccCchhh----hhcCcCCcEEEcCCCcCC---CCCChhh-------cCCccccEEEec
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIPSG----LRNLVNLELLHLGDNQFK---GQIPGTI-------GDLLKLQRLTLQ 67 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p~~----~~~l~~L~~L~l~~~~i~---~~~~~~~-------~~l~~L~~L~l~ 67 (248)
++..+..++ +|+.|++++|.+....+.. +..+++|++|++++|.+. +..|..+ ..+++|++|+++
T Consensus 24 l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 456677777 8999999999887654433 567889999999886444 3445444 578899999999
Q ss_pred Cccccc----cCCcccCCCCCccEEEcccccccccCCcc----ccCC---------CCCcEEEcccCcCc-cccc---hh
Q 039116 68 GNKFLG----EIPPSIGNLTLLTTLNFGENMLEESIPSS----LGKC---------QNIALLDLSNNNLS-GTIP---TE 126 (248)
Q Consensus 68 ~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~----l~~l---------~~L~~L~l~~n~i~-~~~~---~~ 126 (248)
+|.+.. .++..+..+++|+.|++++|.+....+.. +..+ ++|++|++.+|+++ ...+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 998875 35667778899999999999886433333 3333 78999999999886 3334 34
Q ss_pred hhhccccccEEEcccCcCCC-----CCCcCccCCCCccEEEecCCcCC----CccC------CCCceEEccCCcceee--
Q 039116 127 VIRLSSLSIYLDLSQNQLNG-----PFPSNFGVLKNLGVIDISENKLS----DDIP------NSLENLNLSFNHFEGE-- 189 (248)
Q Consensus 127 ~~~~~~ll~~L~l~~n~i~~-----~~~~~~~~~~~L~~L~l~~n~i~----~~~p------~~L~~L~l~~n~l~~~-- 189 (248)
+..++.+ ++|++++|.++. ..+..+..+++|+.|++++|.++ ..+| +.|++|++++|.+++.
T Consensus 183 l~~~~~L-~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 183 FQSHRLL-HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHCTTC-CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHhCCCc-CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 5567788 889999998863 23336778888999999999885 2222 4588999999988765
Q ss_pred --cc-CC--cccCCCceeeecCCccce--------------eccCccccCCCCcccc
Q 039116 190 --VP-IK--GVFNNSSAISLDGNDNLC--------------GGISELHLSTCSIKES 227 (248)
Q Consensus 190 --~~-~~--~~~~~l~~l~l~~n~~~~--------------~~l~~l~~~~c~~~~~ 227 (248)
.+ .. +.+++|+.|++++|.--. ..+..+++++|.+...
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 12 22 337888889998885322 2455666677766533
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=4.5e-19 Score=147.50 Aligned_cols=201 Identities=17% Similarity=0.131 Sum_probs=128.6
Q ss_pred CchhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCC-ChhhcCCccccE-EEecCccccccCCccc
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQI-PGTIGDLLKLQR-LTLQGNKFLGEIPPSI 79 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~l~~L~~-L~l~~n~l~~~~~~~l 79 (248)
||..+ ++++++|+|++|.|+...+.+|.++++|++|++++|++.+.. +.+|.+++++.. +.+..|++....++.+
T Consensus 24 iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 24 IPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp CCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred cCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 56554 448999999999998555567999999999999999986444 457788888775 5666788887778889
Q ss_pred CCCCCccEEEcccccccccCCccccCCCC--------------------------CcEEEcccCcCccccchhhhhcccc
Q 039116 80 GNLTLLTTLNFGENMLEESIPSSLGKCQN--------------------------IALLDLSNNNLSGTIPTEVIRLSSL 133 (248)
Q Consensus 80 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~--------------------------L~~L~l~~n~i~~~~~~~~~~~~~l 133 (248)
..+++|+.|++.+|.+....+..+....+ ++.|++.+|+++ .++...+....+
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L 179 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQL 179 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEE
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccch
Confidence 99999999999999887543333333333 444555555555 344444444444
Q ss_pred ccEEEccc-CcCCCCCCcCccCCCCccEEEecCCcCCCccC---CCCceEEccCCcceeeccCCcccCCCceeeecCC
Q 039116 134 SIYLDLSQ-NQLNGPFPSNFGVLKNLGVIDISENKLSDDIP---NSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGN 207 (248)
Q Consensus 134 l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p---~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n 207 (248)
+++++.+ |.++...+..|..+++|+.|++++|+++...+ ..|+.|...++.--...|....+++|+.+++.++
T Consensus 180 -~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 180 -DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp -EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred -hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 5555543 44443333455666666666666666653222 2355555544432233344566666777666543
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=4.6e-21 Score=161.47 Aligned_cols=202 Identities=20% Similarity=0.272 Sum_probs=158.6
Q ss_pred hhhcccCCccEEEcccccc---ccCchhhh-------hcCcCCcEEEcCCCcCCC----CCChhhcCCccccEEEecCcc
Q 039116 5 AVGSLSTQLKILSVENNQF---FGNIPSGL-------RNLVNLELLHLGDNQFKG----QIPGTIGDLLKLQRLTLQGNK 70 (248)
Q Consensus 5 ~~~~~~~~L~~L~l~~~~i---~~~~p~~~-------~~l~~L~~L~l~~~~i~~----~~~~~~~~l~~L~~L~l~~n~ 70 (248)
.+..++ +|+.|++++|.+ .+..|..+ ..+++|++|++++|.++. .++..+..+++|++|++++|.
T Consensus 55 ~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 55 NIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 355677 999999999644 44556555 688999999999999996 366678889999999999999
Q ss_pred ccccCCcc----cCCC---------CCccEEEcccccccc-cCC---ccccCCCCCcEEEcccCcCcc-----ccchhhh
Q 039116 71 FLGEIPPS----IGNL---------TLLTTLNFGENMLEE-SIP---SSLGKCQNIALLDLSNNNLSG-----TIPTEVI 128 (248)
Q Consensus 71 l~~~~~~~----l~~l---------~~L~~L~l~~n~~~~-~~~---~~l~~l~~L~~L~l~~n~i~~-----~~~~~~~ 128 (248)
+....+.. +..+ ++|++|++++|.++. ..+ ..+..+++|+.|++.+|+++. ..+..+.
T Consensus 134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~ 213 (386)
T 2ca6_A 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh
Confidence 86443333 3333 899999999999873 233 356778899999999999873 2232667
Q ss_pred hccccccEEEcccCcCC----CCCCcCccCCCCccEEEecCCcCCCc----c--------CCCCceEEccCCccee----
Q 039116 129 RLSSLSIYLDLSQNQLN----GPFPSNFGVLKNLGVIDISENKLSDD----I--------PNSLENLNLSFNHFEG---- 188 (248)
Q Consensus 129 ~~~~ll~~L~l~~n~i~----~~~~~~~~~~~~L~~L~l~~n~i~~~----~--------p~~L~~L~l~~n~l~~---- 188 (248)
.++++ ++|++++|.++ ..+|..+..+++|+.|++++|.+++. + .+.|++|++++|.+++
T Consensus 214 ~~~~L-~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 214 YCQEL-KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp GCTTC-CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred cCCCc-cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence 78889 99999999995 35677788899999999999999753 1 3569999999999998
Q ss_pred ecc-CC-cccCCCceeeecCCc
Q 039116 189 EVP-IK-GVFNNSSAISLDGND 208 (248)
Q Consensus 189 ~~~-~~-~~~~~l~~l~l~~n~ 208 (248)
..+ .. ..+++|+.|++++|+
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHhcCCCceEEEccCCc
Confidence 244 23 557999999999995
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=2.3e-20 Score=155.98 Aligned_cols=204 Identities=19% Similarity=0.218 Sum_probs=155.9
Q ss_pred hhhhcccCCccEEEccccccccCchhhhhcC-----cCCcEEEcCCCcCCCCCChhhc----CC-ccccEEEecCccccc
Q 039116 4 EAVGSLSTQLKILSVENNQFFGNIPSGLRNL-----VNLELLHLGDNQFKGQIPGTIG----DL-LKLQRLTLQGNKFLG 73 (248)
Q Consensus 4 ~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l-----~~L~~L~l~~~~i~~~~~~~~~----~l-~~L~~L~l~~n~l~~ 73 (248)
..+..++.+|++|++++|.+....+..+..+ ++|++|++++|.+++..+..+. .+ ++|++|++++|.+..
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 3445555589999999999998778888775 9999999999999977666444 44 799999999999986
Q ss_pred cCCcc----cCC-CCCccEEEcccccccccCC----ccccCCC-CCcEEEcccCcCccccchhhh----hc-cccccEEE
Q 039116 74 EIPPS----IGN-LTLLTTLNFGENMLEESIP----SSLGKCQ-NIALLDLSNNNLSGTIPTEVI----RL-SSLSIYLD 138 (248)
Q Consensus 74 ~~~~~----l~~-l~~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~i~~~~~~~~~----~~-~~ll~~L~ 138 (248)
..+.. +.. .++|++|++++|.++...+ ..+...+ +|+.|++.+|++++..+..+. .. +.+ ++|+
T Consensus 124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L-~~L~ 202 (362)
T 3goz_A 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV-TSLD 202 (362)
T ss_dssp SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC-CEEE
T ss_pred HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCC-CEEE
Confidence 65544 334 3699999999999985433 3445555 999999999999865554444 33 578 9999
Q ss_pred cccCcCCCC----CCcCccC-CCCccEEEecCCcCCCccC----------CCCceEEccCCcceee--------ccCCcc
Q 039116 139 LSQNQLNGP----FPSNFGV-LKNLGVIDISENKLSDDIP----------NSLENLNLSFNHFEGE--------VPIKGV 195 (248)
Q Consensus 139 l~~n~i~~~----~~~~~~~-~~~L~~L~l~~n~i~~~~p----------~~L~~L~l~~n~l~~~--------~~~~~~ 195 (248)
+++|.+++. ++..+.. .++|+.|++++|.+++..+ ..|++|++++|.+.+. ......
T Consensus 203 Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~ 282 (362)
T 3goz_A 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT
T ss_pred CCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc
Confidence 999999853 3334444 4699999999999986433 4599999999984432 224556
Q ss_pred cCCCceeeecCCc
Q 039116 196 FNNSSAISLDGND 208 (248)
Q Consensus 196 ~~~l~~l~l~~n~ 208 (248)
+++|+.+++++|+
T Consensus 283 l~~L~~LdL~~N~ 295 (362)
T 3goz_A 283 IQKIILVDKNGKE 295 (362)
T ss_dssp CCEEEEECTTSCB
T ss_pred CCceEEEecCCCc
Confidence 7788999999996
No 94
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=3.4e-19 Score=148.87 Aligned_cols=173 Identities=25% Similarity=0.196 Sum_probs=135.2
Q ss_pred ccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhc-CCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 13 LKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIG-DLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 13 L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
-+.++++++.+. .+|..+. +.++.|++++|++++..+..+. ++++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 457888888887 5666553 4588899999999877777776 88899999999999887777788889999999999
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCc---cCCCCccEEEecCCcC
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNF---GVLKNLGVIDISENKL 168 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~---~~~~~L~~L~l~~n~i 168 (248)
+|.++...+..+..+++|+.|++.+|+++...+..+..+++| ++|++++|.++...+..+ ..+++|+.|++++|++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL-QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC-CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 999887666778888999999999999886666777888888 899999999885433344 5688899999999998
Q ss_pred CCccCCC--------CceEEccCCcceee
Q 039116 169 SDDIPNS--------LENLNLSFNHFEGE 189 (248)
Q Consensus 169 ~~~~p~~--------L~~L~l~~n~l~~~ 189 (248)
++..+.. ++.|++++|.+...
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CccCHHHhhhccHhhcceEEecCCCccCC
Confidence 7432211 46788888888754
No 95
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.3e-19 Score=151.39 Aligned_cols=159 Identities=21% Similarity=0.198 Sum_probs=138.5
Q ss_pred cCCccEEEccccccccCchhhhh-cCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEE
Q 039116 10 STQLKILSVENNQFFGNIPSGLR-NLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTL 88 (248)
Q Consensus 10 ~~~L~~L~l~~~~i~~~~p~~~~-~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 88 (248)
+..++.|+|++|.++...+..|. ++++|+.|++++|+++...+..|.++++|++|++++|.+....+..+..+++|+.|
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 34789999999999977777777 89999999999999998888889999999999999999997777789999999999
Q ss_pred EcccccccccCCccccCCCCCcEEEcccCcCccccchhh----hhccccccEEEcccCcCCCCCCcCccCCCC--ccEEE
Q 039116 89 NFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEV----IRLSSLSIYLDLSQNQLNGPFPSNFGVLKN--LGVID 162 (248)
Q Consensus 89 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~----~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~--L~~L~ 162 (248)
++++|.++...+..+..+++|+.|++.+|+++ .+|... ..++.+ +.|++++|.++...+..+..++. ++.|+
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L-~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKL-MLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTC-CEEECCSSCCCCCCHHHHHHSCHHHHTTEE
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcC-CEEECCCCCCCccCHHHhhhccHhhcceEE
Confidence 99999999877889999999999999999998 566554 468888 99999999999655556677776 48899
Q ss_pred ecCCcCCC
Q 039116 163 ISENKLSD 170 (248)
Q Consensus 163 l~~n~i~~ 170 (248)
+++|++..
T Consensus 196 l~~N~~~C 203 (361)
T 2xot_A 196 LHNNPLEC 203 (361)
T ss_dssp CCSSCEEC
T ss_pred ecCCCccC
Confidence 99999864
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=2e-18 Score=151.65 Aligned_cols=173 Identities=21% Similarity=0.294 Sum_probs=144.7
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+++.|++++|.+.+ +|..+. ++|+.|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 79999999999985 776553 78999999999999 566 357899999999999986 666 554 99999999
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCc
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDD 171 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 171 (248)
+|.+++ +|. .+++|+.|++.+|.++ .+|. .++++ ++|++++|.+++ +|. +. ++|+.|++++|.++ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L-~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLT-MLPE---LPTSL-EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC---CCTTC-CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccC-cCCC---cCCCc-CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 999997 565 6789999999999998 5665 46778 999999999995 666 55 89999999999998 4
Q ss_pred cCC---CC-------ceEEccCCcceeeccCCcccCCCceeeecCCcc
Q 039116 172 IPN---SL-------ENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDN 209 (248)
Q Consensus 172 ~p~---~L-------~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~ 209 (248)
+|. .| +.|++++|+++..++....+++|+.|++++|+.
T Consensus 195 lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 195 LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred hhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 443 67 999999999997665556699999999999964
No 97
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=4.6e-18 Score=150.90 Aligned_cols=191 Identities=23% Similarity=0.267 Sum_probs=95.9
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+|+.|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|++|++++|.+.+ +|. .+++|+.|+++
T Consensus 62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIF 129 (622)
T ss_dssp TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECC
T ss_pred CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECC
Confidence 7777777777776 4444 4567777777777776 3443 45677777777776653 232 34555555555
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchhhh-----------------hccccccEEEcccCcCCCCCCcCccC
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVI-----------------RLSSLSIYLDLSQNQLNGPFPSNFGV 154 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-----------------~~~~ll~~L~l~~n~i~~~~~~~~~~ 154 (248)
+|.++. +|.. +++|++|++.+|+++ .+|..+. .++++ +.|++++|.+++ +|..
T Consensus 130 ~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~N~l~~l~~~~~~L-~~L~Ls~N~l~~-l~~~--- 199 (622)
T 3g06_A 130 GNQLTS-LPVL---PPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPSGL-QELSVSDNQLAS-LPTL--- 199 (622)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCCCCCTTC-CEEECCSSCCSC-CCCC---
T ss_pred CCCCCc-CCCC---CCCCCEEECcCCcCC-CcCCccCCCCEEECCCCCCCCCcccCCCC-cEEECCCCCCCC-CCCc---
Confidence 555553 3322 245555555555554 2222111 11344 555555555542 2221
Q ss_pred CCCccEEEecCCcCCCc--cCCCCceEEccCCcceeeccCCcccCCCceeeecCCcc-----ceeccCccccCCCCcccc
Q 039116 155 LKNLGVIDISENKLSDD--IPNSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDN-----LCGGISELHLSTCSIKES 227 (248)
Q Consensus 155 ~~~L~~L~l~~n~i~~~--~p~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~-----~~~~l~~l~~~~c~~~~~ 227 (248)
+++|+.|++++|.++.. .+..|++|++++|++++.. ..+++|+.|++++|.- ....+..+++++|.+...
T Consensus 200 ~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~l 276 (622)
T 3g06_A 200 PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRL 276 (622)
T ss_dssp CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCSC
T ss_pred cchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCcC
Confidence 23444444444444321 1133555555555555422 3345555555555521 112344455555555444
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=8.3e-19 Score=136.58 Aligned_cols=140 Identities=21% Similarity=0.257 Sum_probs=124.9
Q ss_pred CchhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCC
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGN 81 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 81 (248)
+|..+. ++++.|++++|.+....+..|.++++|+.|++++|+++...|..|.++++|++|++++|.++...+..+..
T Consensus 26 iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 102 (220)
T 2v9t_B 26 IPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG 102 (220)
T ss_dssp CCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccC
Confidence 455443 48999999999999777778999999999999999999888999999999999999999999666667899
Q ss_pred CCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCC
Q 039116 82 LTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLN 145 (248)
Q Consensus 82 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~ 145 (248)
+++|+.|++++|.+++..+..+..+++|+.|++.+|.++...+..+..++.+ +++++++|.+.
T Consensus 103 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~~~ 165 (220)
T 2v9t_B 103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI-QTMHLAQNPFI 165 (220)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSSCEE
T ss_pred CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC-CEEEeCCCCcC
Confidence 9999999999999998888899999999999999999995555567788999 99999999886
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=3.2e-20 Score=153.25 Aligned_cols=206 Identities=19% Similarity=0.191 Sum_probs=162.0
Q ss_pred hhhcccCCccEEEccccccccC-chhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCc-ccccc-CCcccCC
Q 039116 5 AVGSLSTQLKILSVENNQFFGN-IPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGN-KFLGE-IPPSIGN 81 (248)
Q Consensus 5 ~~~~~~~~L~~L~l~~~~i~~~-~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~l~~ 81 (248)
.++.++ +|++|++++|.+... .+..+.++++|++|++++|.+++..+..+..+++|++|++++| .+++. .+..+..
T Consensus 88 ~~~~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~ 166 (336)
T 2ast_B 88 EHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166 (336)
T ss_dssp SCCCCB-CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred hhccCC-CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence 355666 999999999998755 7888999999999999999998778888999999999999999 56642 4556778
Q ss_pred CCCccEEEcccc-ccccc-CCccccCCC-CCcEEEcccC--cCc-cccchhhhhccccccEEEcccCc-CCCCCCcCccC
Q 039116 82 LTLLTTLNFGEN-MLEES-IPSSLGKCQ-NIALLDLSNN--NLS-GTIPTEVIRLSSLSIYLDLSQNQ-LNGPFPSNFGV 154 (248)
Q Consensus 82 l~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L~~L~l~~n--~i~-~~~~~~~~~~~~ll~~L~l~~n~-i~~~~~~~~~~ 154 (248)
+++|++|++++| .++.. .+..+..++ +|+.|++.+| .++ ..++..+..++++ ++|++++|. +++..+..+..
T Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L-~~L~l~~~~~l~~~~~~~l~~ 245 (336)
T 2ast_B 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL-VHLDLSDSVMLKNDCFQEFFQ 245 (336)
T ss_dssp CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC-SEEECTTCTTCCGGGGGGGGG
T ss_pred CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCC-CEEeCCCCCcCCHHHHHHHhC
Confidence 999999999999 88753 456678889 9999999999 454 3566777889999 999999999 66666778889
Q ss_pred CCCccEEEecCCc-CCCc----c--CCCCceEEccCCcceeeccCCccc-CCCceeeecCCccceeccCc
Q 039116 155 LKNLGVIDISENK-LSDD----I--PNSLENLNLSFNHFEGEVPIKGVF-NNSSAISLDGNDNLCGGISE 216 (248)
Q Consensus 155 ~~~L~~L~l~~n~-i~~~----~--p~~L~~L~l~~n~l~~~~~~~~~~-~~l~~l~l~~n~~~~~~l~~ 216 (248)
+++|+.|++++|. ++.. + -+.|++|++++| ++.. ....+ ..+..|++++| .+.+..|.
T Consensus 246 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n-~l~~~~~~ 311 (336)
T 2ast_B 246 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG--TLQLLKEALPHLQINCS-HFTTIARP 311 (336)
T ss_dssp CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT--CHHHHHHHSTTSEESCC-CSCCTTCS
T ss_pred CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH--HHHHHHhhCcceEEecc-cCccccCC
Confidence 9999999999995 4322 1 245999999999 4321 11222 34666778776 56665554
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=2.7e-18 Score=139.29 Aligned_cols=181 Identities=24% Similarity=0.337 Sum_probs=150.0
Q ss_pred EEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEccccc
Q 039116 15 ILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENM 94 (248)
Q Consensus 15 ~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 94 (248)
.+.+....+.... .+..+++|+.|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 28 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 28 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred HHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence 3445555555322 346789999999999999854 3 47889999999999999985543 8899999999999999
Q ss_pred ccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCccC-
Q 039116 95 LEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIP- 173 (248)
Q Consensus 95 ~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p- 173 (248)
++. ...+..+++|+.|++.+|++++ + ..+..++++ ++|++++|.+++. ..+..+++|+.|++++|++++..+
T Consensus 102 l~~--~~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L-~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~l 174 (291)
T 1h6t_A 102 VKD--LSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPL 174 (291)
T ss_dssp CCC--GGGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTC-CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGG
T ss_pred CCC--ChhhccCCCCCEEECCCCcCCC-C-hhhcCCCCC-CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchhh
Confidence 986 3458899999999999999984 4 467888999 9999999999854 567899999999999999986543
Q ss_pred ---CCCceEEccCCcceeeccCCcccCCCceeeecCCcc
Q 039116 174 ---NSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDN 209 (248)
Q Consensus 174 ---~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~ 209 (248)
..|++|++++|.+++... ...+++|+.|++++|+-
T Consensus 175 ~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp TTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred cCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcc
Confidence 459999999999997654 78899999999999963
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=134.45 Aligned_cols=151 Identities=21% Similarity=0.251 Sum_probs=127.1
Q ss_pred CcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCC-cccCCCCCccEEEcccccccccCCccccCCCCCcEEEcc
Q 039116 37 LELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIP-PSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLS 115 (248)
Q Consensus 37 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 115 (248)
-+.++++++.++ .+|..+. +.+++|++++|.+....+ ..+..+++|+.|++++|.+++..+..+..+++|+.|++.
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 358999999998 4565543 357899999999986644 457899999999999999998777789999999999999
Q ss_pred cCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCccCC------CCceEEccCCcceee
Q 039116 116 NNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPN------SLENLNLSFNHFEGE 189 (248)
Q Consensus 116 ~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~------~L~~L~l~~n~l~~~ 189 (248)
+|.+++..+..+..++.+ ++|++++|.+++..|..+..+++|+.|++++|++++..|. .|++|++++|.+.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESL-KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SSCCCCCCGGGGTTCSSC-CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCccCccCHhHhcCCcCC-CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 999986556667888999 9999999999988788999999999999999999876553 378888888888876
Q ss_pred cc
Q 039116 190 VP 191 (248)
Q Consensus 190 ~~ 191 (248)
.+
T Consensus 169 c~ 170 (220)
T 2v70_A 169 CY 170 (220)
T ss_dssp GG
T ss_pred Cc
Confidence 65
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=3.1e-18 Score=151.76 Aligned_cols=170 Identities=26% Similarity=0.348 Sum_probs=138.7
Q ss_pred hcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCcc
Q 039116 7 GSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLT 86 (248)
Q Consensus 7 ~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 86 (248)
..+. +|+.|++++|.+. .++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+
T Consensus 40 ~~L~-~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 40 NELN-SIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp HHHT-TCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred hcCC-CCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 4566 8999999999987 344 58889999999999999985444 78899999999999988743 3688899999
Q ss_pred EEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCC
Q 039116 87 TLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISEN 166 (248)
Q Consensus 87 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 166 (248)
.|++++|.+.. ...+..+++|+.|++++|.+++ + ..+..+++| +.|++++|.+++..| +..+++|+.|++++|
T Consensus 113 ~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L-~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 113 SLSLEHNGISD--INGLVHLPQLESLYLGNNKITD-I-TVLSRLTKL-DTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp EEECTTSCCCC--CGGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTC-SEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEEecCCCCCC--CccccCCCccCEEECCCCccCC-c-hhhcccCCC-CEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 99999999886 3568888999999999999884 4 567788888 899999999986545 788999999999999
Q ss_pred cCCCccC----CCCceEEccCCcceeec
Q 039116 167 KLSDDIP----NSLENLNLSFNHFEGEV 190 (248)
Q Consensus 167 ~i~~~~p----~~L~~L~l~~n~l~~~~ 190 (248)
++++... +.|+.|++++|++++..
T Consensus 186 ~i~~l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 186 HISDLRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CCCBCGGGTTCTTCSEEECCSEEEECCC
T ss_pred CCCCChHHccCCCCCEEEccCCcCcCCc
Confidence 9875311 35899999999988653
No 103
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=6.5e-20 Score=157.62 Aligned_cols=189 Identities=20% Similarity=0.201 Sum_probs=92.9
Q ss_pred CcEEEcCCCcCCC----CCChhhcCCccccEEEecCccccccCCcc-----cCCCCCccEEEcccccccccC----Cccc
Q 039116 37 LELLHLGDNQFKG----QIPGTIGDLLKLQRLTLQGNKFLGEIPPS-----IGNLTLLTTLNFGENMLEESI----PSSL 103 (248)
Q Consensus 37 L~~L~l~~~~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----l~~l~~L~~L~l~~n~~~~~~----~~~l 103 (248)
|++|++++|.++. ..+..+..+++|++|++++|.+....+.. ....++|++|++++|.++... +..+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 4444444444442 12334444444444444444443221111 111334444454444444321 2233
Q ss_pred cCCCCCcEEEcccCcCccccchhhhh-----ccccccEEEcccCcCCCC----CCcCccCCCCccEEEecCCcCCCc---
Q 039116 104 GKCQNIALLDLSNNNLSGTIPTEVIR-----LSSLSIYLDLSQNQLNGP----FPSNFGVLKNLGVIDISENKLSDD--- 171 (248)
Q Consensus 104 ~~l~~L~~L~l~~n~i~~~~~~~~~~-----~~~ll~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~i~~~--- 171 (248)
..+++|++|++.+|.+++..+..+.. .+.+ ++|++++|.+++. ++..+..+++|+.|++++|.+++.
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L-~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL-EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCC-CEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCc-eEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 34456666666666554322222221 2355 6666666666532 244445567777777777766532
Q ss_pred --------cCCCCceEEccCCcceee-----ccCCcccCCCceeeecCCccc-------e-------eccCccccCCCCc
Q 039116 172 --------IPNSLENLNLSFNHFEGE-----VPIKGVFNNSSAISLDGNDNL-------C-------GGISELHLSTCSI 224 (248)
Q Consensus 172 --------~p~~L~~L~l~~n~l~~~-----~~~~~~~~~l~~l~l~~n~~~-------~-------~~l~~l~~~~c~~ 224 (248)
....|++|++++|.+++. ......+++|+.|++++|.-- + ..+..+++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 124577777777776652 223344667777777777421 0 2566666666665
Q ss_pred cc
Q 039116 225 KE 226 (248)
Q Consensus 225 ~~ 226 (248)
..
T Consensus 326 ~~ 327 (461)
T 1z7x_W 326 TA 327 (461)
T ss_dssp BG
T ss_pred ch
Confidence 43
No 104
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=9.5e-18 Score=148.90 Aligned_cols=179 Identities=25% Similarity=0.305 Sum_probs=102.7
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+|++|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|+.|++++|.++. +|.. +++|+.|+++
T Consensus 82 ~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls 149 (622)
T 3g06_A 82 ELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVS 149 (622)
T ss_dssp TCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred CCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECc
Confidence 7888888888876 4544 56777777777777763 332 34455555555555442 2221 2444444444
Q ss_pred cccccccCCcc---c--------------cCCCCCcEEEcccCcCccccchhhh-----------------hccccccEE
Q 039116 92 ENMLEESIPSS---L--------------GKCQNIALLDLSNNNLSGTIPTEVI-----------------RLSSLSIYL 137 (248)
Q Consensus 92 ~n~~~~~~~~~---l--------------~~l~~L~~L~l~~n~i~~~~~~~~~-----------------~~~~ll~~L 137 (248)
+|.+++ ++.. + ..+++|+.|++.+|.++ .+|..+. .++++ ++|
T Consensus 150 ~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~N~l~~l~~~~~~L-~~L 226 (622)
T 3g06_A 150 DNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGL-KEL 226 (622)
T ss_dssp SSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCCCCCTTC-CEE
T ss_pred CCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC-CCCCccchhhEEECcCCcccccCCCCCCC-CEE
Confidence 444432 1111 1 11255666666666655 2332111 11445 667
Q ss_pred EcccCcCCCCCCcCccCCCCccEEEecCCcCCCc--cCCCCceEEccCCcceeeccCCcccCCCceeeecCCcc
Q 039116 138 DLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDD--IPNSLENLNLSFNHFEGEVPIKGVFNNSSAISLDGNDN 209 (248)
Q Consensus 138 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~--~p~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~l~~n~~ 209 (248)
++++|.+++ +| ..+++|+.|++++|.+++. .+..|+.|++++|+++..++.+..+++|+.|++++|+.
T Consensus 227 ~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 227 IVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp ECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred EccCCccCc-CC---CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 777776663 34 3456777777777777631 12457788888888875544566777788888888853
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=5.8e-18 Score=129.52 Aligned_cols=149 Identities=18% Similarity=0.196 Sum_probs=114.8
Q ss_pred hcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCCcE
Q 039116 32 RNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIAL 111 (248)
Q Consensus 32 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 111 (248)
..+++|+.|++++|.++ ..+ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56788999999999988 445 5788899999999999665 2347888999999999999988767888888999999
Q ss_pred EEcccCcCccccchhhhhccccccEEEcccCc-CCCCCCcCccCCCCccEEEecCCcCCCccC----CCCceEEccCCcc
Q 039116 112 LDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQ-LNGPFPSNFGVLKNLGVIDISENKLSDDIP----NSLENLNLSFNHF 186 (248)
Q Consensus 112 L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p----~~L~~L~l~~n~l 186 (248)
|++.+|.+++..+..+..++++ ++|++++|. ++ ..+ .+..+++|+.|++++|++++..+ +.|++|++++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L-~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKV-NSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSC-CEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCC-CEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCccc
Confidence 9999999886677778888888 899999997 66 444 57788888888888888874211 2355555555554
Q ss_pred e
Q 039116 187 E 187 (248)
Q Consensus 187 ~ 187 (248)
+
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=5e-18 Score=132.96 Aligned_cols=140 Identities=27% Similarity=0.309 Sum_probs=123.3
Q ss_pred CchhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCC
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGN 81 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 81 (248)
+|..+ +++|++|++++|.+.+..|..|.++++|++|++++|+++...+..|..+++|++|++++|.++...+..+..
T Consensus 34 ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 110 (229)
T 3e6j_A 34 VPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR 110 (229)
T ss_dssp CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCc
Confidence 45444 348999999999999888999999999999999999999766677889999999999999999777777899
Q ss_pred CCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCC
Q 039116 82 LTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNG 146 (248)
Q Consensus 82 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~ 146 (248)
+++|+.|++++|.++ .+|..+..+++|+.|++.+|+++...+..+..++.+ +.|++++|.+..
T Consensus 111 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~~~c 173 (229)
T 3e6j_A 111 LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL-THAYLFGNPWDC 173 (229)
T ss_dssp CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECTTSCBCT
T ss_pred chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC-CEEEeeCCCccC
Confidence 999999999999999 478889999999999999999984444557788999 999999999873
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=2.4e-18 Score=143.08 Aligned_cols=177 Identities=22% Similarity=0.246 Sum_probs=124.8
Q ss_pred Cch-hhhcccCCccEEEccccccccCch-hhhhcCcCCcE-EEcCCCcCCCCCChhhcCCccccEEEecCccccccCCc-
Q 039116 2 LPE-AVGSLSTQLKILSVENNQFFGNIP-SGLRNLVNLEL-LHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPP- 77 (248)
Q Consensus 2 lp~-~~~~~~~~L~~L~l~~~~i~~~~p-~~~~~l~~L~~-L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~- 77 (248)
||+ +|.+++ +|++|+|++|.+.+.+| .+|.++++++. +.+..|+++.+.++.|.++++|++|++++|.+....+.
T Consensus 45 i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~ 123 (350)
T 4ay9_X 45 IQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH 123 (350)
T ss_dssp ECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCT
T ss_pred cCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchh
Confidence 454 567787 99999999999865554 46788888765 55667888877788888899999999988877533221
Q ss_pred ------------------------ccCCC-CCccEEEcccccccccCCccccCCCCCcEEEccc-CcCccccch-hhhhc
Q 039116 78 ------------------------SIGNL-TLLTTLNFGENMLEESIPSSLGKCQNIALLDLSN-NNLSGTIPT-EVIRL 130 (248)
Q Consensus 78 ------------------------~l~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~i~~~~~~-~~~~~ 130 (248)
.+..+ ..++.|++++|.++. ++.......+|+.+++.+ |.++ .+|. .+..+
T Consensus 124 ~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l 201 (350)
T 4ay9_X 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGA 201 (350)
T ss_dssp TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTE
T ss_pred hcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCccc-CCCHHHhccC
Confidence 12222 257778888888886 444444556799999975 6666 6665 46788
Q ss_pred cccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCccC-----CCCceEEccCCc
Q 039116 131 SSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIP-----NSLENLNLSFNH 185 (248)
Q Consensus 131 ~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p-----~~L~~L~l~~n~ 185 (248)
+++ ++|++++|.++. +|. ..+.+|+.|.+.++.--..+| ..|+.+++.++.
T Consensus 202 ~~L-~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 202 SGP-VILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPS 257 (350)
T ss_dssp ECC-SEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCHH
T ss_pred ccc-chhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCCCc
Confidence 999 999999999994 443 235566666665554334555 348888887654
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=1.1e-17 Score=133.71 Aligned_cols=144 Identities=28% Similarity=0.406 Sum_probs=63.1
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+|+.|++++|.+. .++ .+..+++|++|++++|++++..+ +..+++|++|++++|++.+. +. +.. ++|+.|+++
T Consensus 42 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~ 114 (263)
T 1xeu_A 42 GVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLD 114 (263)
T ss_dssp TCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECC
T ss_pred cCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEcc
Confidence 4444555444444 222 34444445555555444442222 44444455555554444421 21 111 444445554
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCC
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLS 169 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 169 (248)
+|.+++ . ..+..+++|+.|++++|+++ .++ .+..++++ ++|++++|.+++. ..+..+++|+.|++++|.++
T Consensus 115 ~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~-~~~-~l~~l~~L-~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 115 NNELRD-T-DSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKL-EVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp SSCCSB-S-GGGTTCTTCCEEECTTSCCC-BCG-GGGGCTTC-CEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred CCccCC-C-hhhcCcccccEEECCCCcCC-CCh-HHccCCCC-CEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 444443 1 23444444445555444444 222 33444444 4445544444432 33444444444444444444
No 109
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=4.4e-20 Score=158.66 Aligned_cols=133 Identities=18% Similarity=0.171 Sum_probs=64.1
Q ss_pred CccEEEccccccccCc----hhhhhcCcCCcEEEcCCCcCCCCCChhhc-----CCccccEEEecCcccccc----CCcc
Q 039116 12 QLKILSVENNQFFGNI----PSGLRNLVNLELLHLGDNQFKGQIPGTIG-----DLLKLQRLTLQGNKFLGE----IPPS 78 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~----p~~~~~l~~L~~L~l~~~~i~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~ 78 (248)
+|++|++++|.+.... +..+..+++|++|++++|.++...+..+. ..++|++|++++|.+... ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 5666666666665422 34445556666666666665533222222 133555666665555432 2333
Q ss_pred cCCCCCccEEEcccccccccCC-----ccccCCCCCcEEEcccCcCccc----cchhhhhccccccEEEcccCcCC
Q 039116 79 IGNLTLLTTLNFGENMLEESIP-----SSLGKCQNIALLDLSNNNLSGT----IPTEVIRLSSLSIYLDLSQNQLN 145 (248)
Q Consensus 79 l~~l~~L~~L~l~~n~~~~~~~-----~~l~~l~~L~~L~l~~n~i~~~----~~~~~~~~~~ll~~L~l~~n~i~ 145 (248)
+..+++|++|++++|.+..... .....+++|+.|++.+|.++.. ++..+..++.+ ++|++++|.++
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-~~L~Ls~n~i~ 297 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL-KELSLAGNELG 297 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC-CEEECTTCCCH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCc-ceEECCCCCCc
Confidence 4445555555555555443211 1112344555555555555421 33334444455 55555555443
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=1e-17 Score=133.96 Aligned_cols=165 Identities=19% Similarity=0.276 Sum_probs=137.0
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+++.++++++.+. .++ .+..+++|++|++++|.++. .+ .+..+++|+.|++++|.+.+..+ +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 5677888999887 444 67889999999999999984 45 68889999999999999985544 8899999999999
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCc
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDD 171 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 171 (248)
+|.+++ ++.. .. ++|+.|++.+|+++ .++ .+..++++ ++|++++|.+++. + .++.+++|+.|++++|++++.
T Consensus 94 ~N~l~~-l~~~-~~-~~L~~L~L~~N~l~-~~~-~l~~l~~L-~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 94 RNRLKN-LNGI-PS-ACLSRLFLDNNELR-DTD-SLIHLKNL-EILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SSCCSC-CTTC-CC-SSCCEEECCSSCCS-BSG-GGTTCTTC-CEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCccCC-cCcc-cc-CcccEEEccCCccC-CCh-hhcCcccc-cEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 999986 4432 33 89999999999998 444 57888999 9999999999854 4 678899999999999999864
Q ss_pred cC----CCCceEEccCCcceeec
Q 039116 172 IP----NSLENLNLSFNHFEGEV 190 (248)
Q Consensus 172 ~p----~~L~~L~l~~n~l~~~~ 190 (248)
.. +.|+.|++++|++++..
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECCC
T ss_pred HHhccCCCCCEEeCCCCcccCCc
Confidence 11 34899999999998653
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=5.9e-17 Score=143.52 Aligned_cols=154 Identities=27% Similarity=0.418 Sum_probs=133.7
Q ss_pred hhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCC
Q 039116 5 AVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTL 84 (248)
Q Consensus 5 ~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 84 (248)
.+..++ +|+.|+|++|.+.+..+ +..+++|+.|++++|.+.+ .+ .+..+++|+.|++++|.+... ..+..+++
T Consensus 60 ~l~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~ 132 (605)
T 1m9s_A 60 GIQYLP-NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQ 132 (605)
T ss_dssp TGGGCT-TCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTT
T ss_pred HHccCC-CCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCc
Confidence 577777 99999999999985444 8999999999999999985 33 688899999999999999853 56889999
Q ss_pred ccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEec
Q 039116 85 LTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDIS 164 (248)
Q Consensus 85 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~ 164 (248)
|+.|++++|.+++. ..+..+++|+.|++++|.+.+..| +..++.| +.|++++|.+++. ..+..+++|+.|+++
T Consensus 133 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L-~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 133 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL-QNLYLSKNHISDL--RALAGLKNLDVLELF 205 (605)
T ss_dssp CSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTC-CEEECCSSCCCBC--GGGTTCTTCSEEECC
T ss_pred cCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCC-CEEECcCCCCCCC--hHHccCCCCCEEEcc
Confidence 99999999999874 678899999999999999985444 8889999 9999999999853 468899999999999
Q ss_pred CCcCCCcc
Q 039116 165 ENKLSDDI 172 (248)
Q Consensus 165 ~n~i~~~~ 172 (248)
+|++++..
T Consensus 206 ~N~l~~~p 213 (605)
T 1m9s_A 206 SQECLNKP 213 (605)
T ss_dssp SEEEECCC
T ss_pred CCcCcCCc
Confidence 99998643
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=1.7e-17 Score=126.46 Aligned_cols=112 Identities=22% Similarity=0.314 Sum_probs=57.5
Q ss_pred cccEEEecCccccccCCc-ccCCCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEE
Q 039116 60 KLQRLTLQGNKFLGEIPP-SIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLD 138 (248)
Q Consensus 60 ~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~ 138 (248)
+++.|++++|.+.+..+. .++.+++|+.|++++|.+++..+..+..+++|+.|++.+|++++..+..+..++++ ++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL-KTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTC-CEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCC-CEEE
Confidence 344444444444433222 24444444444444444444444444445555555555555543333334445555 5666
Q ss_pred cccCcCCCCCCcCccCCCCccEEEecCCcCCCcc
Q 039116 139 LSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDI 172 (248)
Q Consensus 139 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 172 (248)
+++|.+++..|..+..+++|+.|++++|++++..
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 6666665555556666666777777777666543
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=7.2e-19 Score=159.10 Aligned_cols=118 Identities=26% Similarity=0.379 Sum_probs=63.2
Q ss_pred CChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhc
Q 039116 51 IPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRL 130 (248)
Q Consensus 51 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~ 130 (248)
.++.+..++.|+.|++++|.+. .+|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.++ .+|..++.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3445555555666666665555 44444445555666666666555 35555555556666666666555 455555555
Q ss_pred cccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCccC
Q 039116 131 SSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIP 173 (248)
Q Consensus 131 ~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p 173 (248)
+.| ++|++++|.++ .+|..++.+++|+.|++++|.+++.+|
T Consensus 293 ~~L-~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 293 FQL-KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp TTC-SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCC-CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh
Confidence 555 55666666555 445555555566666666665554333
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=6.6e-17 Score=142.01 Aligned_cols=161 Identities=26% Similarity=0.433 Sum_probs=132.5
Q ss_pred CchhhhcccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCC
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGN 81 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 81 (248)
+|..++ ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.+ +|++|++++|.+++ +|. .
T Consensus 74 lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~ 138 (571)
T 3cvr_A 74 LPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---L 138 (571)
T ss_dssp CCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---C
T ss_pred cCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---c
Confidence 455553 48999999999998 677 457999999999999996 665 554 99999999999986 555 6
Q ss_pred CCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCc---
Q 039116 82 LTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNL--- 158 (248)
Q Consensus 82 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L--- 158 (248)
+++|+.|++++|.+++ +|. .+++|+.|++.+|.++ .+|. +. +++ ++|++++|.++ .+|. +.. +|
T Consensus 139 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~-~lp~-l~--~~L-~~L~Ls~N~L~-~lp~-~~~--~L~~~ 205 (571)
T 3cvr_A 139 PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT-FLPE-LP--ESL-EALDVSTNLLE-SLPA-VPV--RNHHS 205 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC-CC--TTC-CEEECCSSCCS-SCCC-CC--------
T ss_pred CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC-Ccch-hh--CCC-CEEECcCCCCC-chhh-HHH--hhhcc
Confidence 8999999999999987 555 5689999999999998 4776 44 777 99999999999 5666 544 67
Q ss_pred ----cEEEecCCcCCCccCC------CCceEEccCCcceeecc
Q 039116 159 ----GVIDISENKLSDDIPN------SLENLNLSFNHFEGEVP 191 (248)
Q Consensus 159 ----~~L~l~~n~i~~~~p~------~L~~L~l~~n~l~~~~~ 191 (248)
+.|++++|+++ .+|. .|+.|++++|++++..|
T Consensus 206 ~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 206 EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp --CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred cccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 99999999998 4564 59999999999998766
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=4.6e-19 Score=156.03 Aligned_cols=187 Identities=20% Similarity=0.164 Sum_probs=142.8
Q ss_pred cccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCc-------------CCCCCChhhcCCccccEEE-ecCccccc
Q 039116 8 SLSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQ-------------FKGQIPGTIGDLLKLQRLT-LQGNKFLG 73 (248)
Q Consensus 8 ~~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~-------------i~~~~~~~~~~l~~L~~L~-l~~n~l~~ 73 (248)
..+ +|+.|++++|.+. .+|+.++++++|+.|++.+|. ..+..|..+..+++|+.|+ ++.|.+..
T Consensus 347 ~~~-~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 347 TDE-QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp TTT-TSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred cCc-cceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 344 8889999999987 789999999999999987664 4445667777888888887 55543321
Q ss_pred cCCc------ccCC--CCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCC
Q 039116 74 EIPP------SIGN--LTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLN 145 (248)
Q Consensus 74 ~~~~------~l~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~ 145 (248)
. +. .+.. ...|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++| +.|++++|.++
T Consensus 425 L-~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L-~~L~Ls~N~l~ 499 (567)
T 1dce_A 425 L-RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL-EVLQASDNALE 499 (567)
T ss_dssp H-HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC-CEEECCSSCCC
T ss_pred h-hhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCC-CEEECCCCCCC
Confidence 1 00 0111 1258899999999986 565 888999999999999998 888888899999 89999999998
Q ss_pred CCCCcCccCCCCccEEEecCCcCCCcc-CC------CCceEEccCCcceeeccCC----cccCCCceee
Q 039116 146 GPFPSNFGVLKNLGVIDISENKLSDDI-PN------SLENLNLSFNHFEGEVPIK----GVFNNSSAIS 203 (248)
Q Consensus 146 ~~~~~~~~~~~~L~~L~l~~n~i~~~~-p~------~L~~L~l~~n~l~~~~~~~----~~~~~l~~l~ 203 (248)
+ +| .++.+++|+.|++++|++++.. |. .|+.|++++|++++.++.. ..+++|+.|+
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 5 56 7888999999999999998664 53 4888999999988876633 2367777765
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=8.8e-17 Score=119.70 Aligned_cols=132 Identities=23% Similarity=0.295 Sum_probs=91.6
Q ss_pred CcCCcEEEcCCCcCC-CCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCCcEE
Q 039116 34 LVNLELLHLGDNQFK-GQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALL 112 (248)
Q Consensus 34 l~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 112 (248)
.++|++|++++|.++ +..|..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+++..|..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356777777777776 45566666777777777777777644 566677777777777777776556666667777777
Q ss_pred EcccCcCccccc--hhhhhccccccEEEcccCcCCCCCC---cCccCCCCccEEEecCCcCC
Q 039116 113 DLSNNNLSGTIP--TEVIRLSSLSIYLDLSQNQLNGPFP---SNFGVLKNLGVIDISENKLS 169 (248)
Q Consensus 113 ~l~~n~i~~~~~--~~~~~~~~ll~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~~n~i~ 169 (248)
++.+|.++ .++ ..+..++.+ ++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 101 ~Ls~N~l~-~~~~~~~l~~l~~L-~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLK-DISTLEPLKKLECL-KSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCC-SSGGGGGGSSCSCC-CEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccC-cchhHHHHhcCCCC-CEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 77777776 333 456667777 777777777774433 35667777888888777775
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=6.9e-17 Score=120.26 Aligned_cols=136 Identities=26% Similarity=0.327 Sum_probs=118.3
Q ss_pred cCCccEEEccccccc-cCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEE
Q 039116 10 STQLKILSVENNQFF-GNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTL 88 (248)
Q Consensus 10 ~~~L~~L~l~~~~i~-~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 88 (248)
+++|+.|++++|.+. +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 348999999999997 67788889999999999999999965 678899999999999999997678778789999999
Q ss_pred EcccccccccCC-ccccCCCCCcEEEcccCcCccccch----hhhhccccccEEEcccCcCCCCCCc
Q 039116 89 NFGENMLEESIP-SSLGKCQNIALLDLSNNNLSGTIPT----EVIRLSSLSIYLDLSQNQLNGPFPS 150 (248)
Q Consensus 89 ~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~----~~~~~~~ll~~L~l~~n~i~~~~~~ 150 (248)
++++|.+++... ..+..+++|+.|++.+|.++ ..+. .+..++++ ++|++++|.+. ..|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L-~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQL-TYLDGYDREDQ-EAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSC-CEETTEETTSC-BCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccC-cEecCCCCChh-hccc
Confidence 999999986322 67889999999999999998 4554 67789999 99999999887 4454
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=2.3e-16 Score=120.14 Aligned_cols=131 Identities=24% Similarity=0.343 Sum_probs=113.1
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCCh-hhcCCccccEEEecCccccccCCcccCCCCCccEEEc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPG-TIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNF 90 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 90 (248)
.-+.++++++.++ .+|..+. ..+++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 9 ~~~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 9 EGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 3478999999987 6776554 3899999999999866654 4888999999999999999888889999999999999
Q ss_pred ccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCC
Q 039116 91 GENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNG 146 (248)
Q Consensus 91 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~ 146 (248)
++|.+++..+..+..+++|+.|++.+|++++..|..+..++++ ++|++++|.+..
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~c 140 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL-TSLNLASNPFNC 140 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC-CEEECTTCCBCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC-CEEEeCCCCccC
Confidence 9999998777788999999999999999987777778888899 999999998874
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=2.1e-17 Score=149.53 Aligned_cols=178 Identities=22% Similarity=0.285 Sum_probs=123.8
Q ss_pred CchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccC
Q 039116 26 NIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGK 105 (248)
Q Consensus 26 ~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 105 (248)
..+..|..++.|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|+.|++++|.++ .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 44777889999999999999999 66777779999999999999998 78889999999999999999999 57999999
Q ss_pred CCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCC-CccEEEecCCcCCCccCCCCceEEccCC
Q 039116 106 CQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLK-NLGVIDISENKLSDDIPNSLENLNLSFN 184 (248)
Q Consensus 106 l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~i~~~~p~~L~~L~l~~n 184 (248)
+++|+.|++.+|.++ .+|..++.+++| ++|++++|.+++..|..+.... ....+++++|.+++.+|..+..|++++|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L-~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNL-QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEINTD 369 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTC-CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCc-cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeEeecc
Confidence 999999999999998 888889999999 9999999999977777665432 2235789999999999999999999888
Q ss_pred --------cceeecc-CCcccCCCceeeecCCc
Q 039116 185 --------HFEGEVP-IKGVFNNSSAISLDGND 208 (248)
Q Consensus 185 --------~l~~~~~-~~~~~~~l~~l~l~~n~ 208 (248)
.+.+..+ ....+..+....++.|.
T Consensus 370 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Ni 402 (727)
T 4b8c_D 370 GEPQREYDSLQQSTEHLATDLAKRTFTVLSYNT 402 (727)
T ss_dssp --------------------------------C
T ss_pred cccccccCCccccccchhhcccccceeeeeccc
Confidence 2222222 22233444555666674
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=2.4e-16 Score=114.96 Aligned_cols=127 Identities=20% Similarity=0.297 Sum_probs=67.2
Q ss_pred cCCcEEEcCCCcCC-CCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCCcEEE
Q 039116 35 VNLELLHLGDNQFK-GQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLD 113 (248)
Q Consensus 35 ~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 113 (248)
++++.|++++|.++ +..|..+..+++|+.|++++|.+.+. ..++.+++|+.|++++|.+++..|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555555 34444445555555555555555533 4455555555555555555544444444555566666
Q ss_pred cccCcCccc-cchhhhhccccccEEEcccCcCCCCCC---cCccCCCCccEEEec
Q 039116 114 LSNNNLSGT-IPTEVIRLSSLSIYLDLSQNQLNGPFP---SNFGVLKNLGVIDIS 164 (248)
Q Consensus 114 l~~n~i~~~-~~~~~~~~~~ll~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~ 164 (248)
+.+|.+++. .+..+..++++ ++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENL-KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTC-CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCC-CEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666655521 12445555555 566666666553322 244555666665554
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=9.5e-18 Score=147.67 Aligned_cols=165 Identities=19% Similarity=0.237 Sum_probs=132.3
Q ss_pred CchhhhcccCCccEEEccccc-------------cccCchhhhhcCcCCcEEE-cCCCcCCCCCC-----hhhcC--Ccc
Q 039116 2 LPEAVGSLSTQLKILSVENNQ-------------FFGNIPSGLRNLVNLELLH-LGDNQFKGQIP-----GTIGD--LLK 60 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~-------------i~~~~p~~~~~l~~L~~L~-l~~~~i~~~~~-----~~~~~--l~~ 60 (248)
||+.++++. +|+.|++++|. ..+..|..++++++|+.|+ ++.+.+..... ..+.. ...
T Consensus 364 Lp~~i~~l~-~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~ 442 (567)
T 1dce_A 364 LQSELESCK-ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD 442 (567)
T ss_dssp HHHHHHHHH-HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHH-HHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccC
Confidence 688899888 89999987764 4556778888888888888 55554331100 01111 135
Q ss_pred ccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcc
Q 039116 61 LQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLS 140 (248)
Q Consensus 61 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~ 140 (248)
|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.++ .+| .++.+++| +.|+++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L-~~L~Ls 516 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRL-QELLLC 516 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSC-CEEECC
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCCCC-cEEECC
Confidence 8899999999985 565 889999999999999999 57889999999999999999998 577 78889999 999999
Q ss_pred cCcCCCCC-CcCccCCCCccEEEecCCcCCCccC
Q 039116 141 QNQLNGPF-PSNFGVLKNLGVIDISENKLSDDIP 173 (248)
Q Consensus 141 ~n~i~~~~-~~~~~~~~~L~~L~l~~n~i~~~~p 173 (248)
+|.+++.. |..++.+++|+.|++++|++++.+|
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 99999765 8899999999999999999986544
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=2.6e-16 Score=114.82 Aligned_cols=128 Identities=24% Similarity=0.283 Sum_probs=111.1
Q ss_pred CCccEEEccccccc-cCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEE
Q 039116 11 TQLKILSVENNQFF-GNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLN 89 (248)
Q Consensus 11 ~~L~~L~l~~~~i~-~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 89 (248)
++++.|++++|.+. +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 48999999999998 67888889999999999999999965 6788999999999999999976788788899999999
Q ss_pred ccccccccc-CCccccCCCCCcEEEcccCcCccccc---hhhhhccccccEEEccc
Q 039116 90 FGENMLEES-IPSSLGKCQNIALLDLSNNNLSGTIP---TEVIRLSSLSIYLDLSQ 141 (248)
Q Consensus 90 l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~---~~~~~~~~ll~~L~l~~ 141 (248)
+++|.+++. .+..+..+++|+.|++.+|.+++..+ ..+..++++ ++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L-~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL-TYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC-CEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc-ccccCCC
Confidence 999999863 23778999999999999999984433 367788999 8888753
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.8e-15 Score=115.33 Aligned_cols=108 Identities=27% Similarity=0.331 Sum_probs=55.3
Q ss_pred cccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEc
Q 039116 60 KLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDL 139 (248)
Q Consensus 60 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l 139 (248)
+++.|++++|.++ .+|..+..+++|+.|++++|.++...+..+..+++|+.|++.+|.++...+..+..++++ ++|++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L-~~L~L 109 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL-RLLSL 109 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC-CEEEC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCC-CEEEC
Confidence 3444444444444 333444444444444444444444333444455555555555555543333344455555 55666
Q ss_pred ccCcCCCCCCcCccCCCCccEEEecCCcCC
Q 039116 140 SQNQLNGPFPSNFGVLKNLGVIDISENKLS 169 (248)
Q Consensus 140 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 169 (248)
++|.++...+..+..+++|+.|++++|++.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 666555433445566666777777777665
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=5.3e-15 Score=110.97 Aligned_cols=131 Identities=23% Similarity=0.234 Sum_probs=77.3
Q ss_pred cEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCCcEEEcccC
Q 039116 38 ELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNN 117 (248)
Q Consensus 38 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 117 (248)
+.+++++++++ ..|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++.+|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 44555555555 233222 245566666666655444444556666666666666666544444566666667777666
Q ss_pred cCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCcc
Q 039116 118 NLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDI 172 (248)
Q Consensus 118 ~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 172 (248)
++++..+..+..++.+ ++|++++|.+++..+..+..+++|+.|++++|++++..
T Consensus 87 ~l~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQL-KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTC-CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCccc-CEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 6663333334566666 77777777777544445566777777777777776543
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=4.4e-15 Score=113.11 Aligned_cols=127 Identities=25% Similarity=0.330 Sum_probs=89.5
Q ss_pred cEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcccc
Q 039116 14 KILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGEN 93 (248)
Q Consensus 14 ~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 93 (248)
+.++++++.++ .+|..+. ++|+.|++++|.++ .+|..+.++++|++|++++|.++...+..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56777777776 5555443 56777777777777 55667777777777777777777666667777777777777777
Q ss_pred cccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCC
Q 039116 94 MLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLN 145 (248)
Q Consensus 94 ~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~ 145 (248)
.++...+..+..+++|+.|++.+|.++...+..+..++.+ +.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL-SHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC-CEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccc-cEEEeCCCCee
Confidence 7777666667777777777777777773333345566777 77777777665
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=7.9e-15 Score=110.00 Aligned_cols=130 Identities=24% Similarity=0.305 Sum_probs=100.5
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
..+.++++++++. .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.++...+..+..+++|+.|+++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4567888888877 4554433 678888888888886666667788888888888888886666667888888888888
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchh-hhhccccccEEEcccCcCCC
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTE-VIRLSSLSIYLDLSQNQLNG 146 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-~~~~~~ll~~L~l~~n~i~~ 146 (248)
+|.+++..+..+..+++|+.|++.+|.++ .++.. +..++.+ +++++++|.+..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L-~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSL-QKIWLHTNPWDC 138 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTC-CEEECCSSCBCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCccc-CEEEecCCCeec
Confidence 88888766666788888888888888887 44443 4667788 888888888774
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=2.7e-15 Score=112.53 Aligned_cols=132 Identities=20% Similarity=0.184 Sum_probs=81.4
Q ss_pred hhcCcCCcEEEcCCCcCCCCCChhhcCC-ccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCC
Q 039116 31 LRNLVNLELLHLGDNQFKGQIPGTIGDL-LKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNI 109 (248)
Q Consensus 31 ~~~l~~L~~L~l~~~~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 109 (248)
+...++|+.|++++|.++. .+. +..+ ++|++|++++|.+.+. ..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3455666777777776663 333 3333 3677777777766643 456666777777777777665333334666777
Q ss_pred cEEEcccCcCccccch--hhhhccccccEEEcccCcCCCCCCcC----ccCCCCccEEEecCCcCC
Q 039116 110 ALLDLSNNNLSGTIPT--EVIRLSSLSIYLDLSQNQLNGPFPSN----FGVLKNLGVIDISENKLS 169 (248)
Q Consensus 110 ~~L~l~~n~i~~~~~~--~~~~~~~ll~~L~l~~n~i~~~~~~~----~~~~~~L~~L~l~~n~i~ 169 (248)
+.|++++|.++ .+|. .+..++++ +.|++++|.++ ..|.. +..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L-~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSL-TYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTC-CEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCC-CEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777765 4444 45566666 67777777766 34442 556667777776666654
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=4.1e-15 Score=111.50 Aligned_cols=131 Identities=17% Similarity=0.200 Sum_probs=110.4
Q ss_pred hcccCCccEEEccccccccCchhhhhcCc-CCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCc
Q 039116 7 GSLSTQLKILSVENNQFFGNIPSGLRNLV-NLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLL 85 (248)
Q Consensus 7 ~~~~~~L~~L~l~~~~i~~~~p~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 85 (248)
.+.. +|+.|++++|.+. .++. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 16 ~~~~-~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 16 TNAV-RDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp ECTT-SCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CCcC-CceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3445 8999999999998 4454 55554 999999999999965 578899999999999999986655556889999
Q ss_pred cEEEcccccccccCCc--cccCCCCCcEEEcccCcCccccchh----hhhccccccEEEcccCcCC
Q 039116 86 TTLNFGENMLEESIPS--SLGKCQNIALLDLSNNNLSGTIPTE----VIRLSSLSIYLDLSQNQLN 145 (248)
Q Consensus 86 ~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~i~~~~~~~----~~~~~~ll~~L~l~~n~i~ 145 (248)
+.|++++|.+.. .+. .+..+++|+.|++.+|.++ ..|.. +..++.+ ++|++++|...
T Consensus 91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L-~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV-RVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC-SEETTEECCHH
T ss_pred CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc-ceeCCCcCCHH
Confidence 999999999975 554 7889999999999999998 66664 7889999 99999999875
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=3.3e-17 Score=125.38 Aligned_cols=127 Identities=24% Similarity=0.277 Sum_probs=67.8
Q ss_pred CccEEEccccccccCchh------hhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCc
Q 039116 12 QLKILSVENNQFFGNIPS------GLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLL 85 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~------~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 85 (248)
.++.++++++.+.+..|. .+.++++|++|++++|.+++ .| .+.++++|++|++++|.+. .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 444444444444443333 56666666666666666663 34 5555666666666666655 344444445556
Q ss_pred cEEEcccccccccCCccccCCCCCcEEEcccCcCccccc--hhhhhccccccEEEcccCcCC
Q 039116 86 TTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIP--TEVIRLSSLSIYLDLSQNQLN 145 (248)
Q Consensus 86 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~~~~ll~~L~l~~n~i~ 145 (248)
+.|++++|.+++ ++ .+..+++|+.|++.+|.++ .++ ..+..++++ ++|++++|.++
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L-~~L~l~~N~l~ 153 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKL-EDLLLAGNPLY 153 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTC-SEEEECSCHHH
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCC-CEEEecCCccc
Confidence 666666665554 22 3445555555555555554 222 234445555 55555555554
No 130
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.52 E-value=2.6e-15 Score=132.78 Aligned_cols=197 Identities=12% Similarity=0.083 Sum_probs=108.2
Q ss_pred CchhhhhcCcCCcEEEcCCCcCCCCCC-hhhcCCccccEEEecCccccc-cCCcccCCCCCccEEEccc-----------
Q 039116 26 NIPSGLRNLVNLELLHLGDNQFKGQIP-GTIGDLLKLQRLTLQGNKFLG-EIPPSIGNLTLLTTLNFGE----------- 92 (248)
Q Consensus 26 ~~p~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~----------- 92 (248)
.+|..+..+++|++|++++|.+++... ..+..+++|++|++. +.+.. .++.....+++|++|++.+
T Consensus 284 ~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~ 362 (592)
T 3ogk_B 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362 (592)
T ss_dssp TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence 445556667777777777777653322 224567777777776 33221 2222234566777777773
Q ss_pred ccccccCCc-cccCCCCCcEEEcccCcCccccchhhhh-ccccccEEEcc----cCcCCCC-----CCcCccCCCCccEE
Q 039116 93 NMLEESIPS-SLGKCQNIALLDLSNNNLSGTIPTEVIR-LSSLSIYLDLS----QNQLNGP-----FPSNFGVLKNLGVI 161 (248)
Q Consensus 93 n~~~~~~~~-~l~~l~~L~~L~l~~n~i~~~~~~~~~~-~~~ll~~L~l~----~n~i~~~-----~~~~~~~~~~L~~L 161 (248)
+.++..... ....+++|+.|++..+.+++..+..++. ++++ +.|+++ .|.+++. ++..+..+++|+.|
T Consensus 363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L-~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L 441 (592)
T 3ogk_B 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNL-CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441 (592)
T ss_dssp CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSC-CEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCC-cEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEE
Confidence 344322111 1234667777777666666544444443 6666 777775 4455532 11123446677777
Q ss_pred EecCCc--CCCc-------cCCCCceEEccCCcceee--ccCCcccCCCceeeecCCccce-----------eccCcccc
Q 039116 162 DISENK--LSDD-------IPNSLENLNLSFNHFEGE--VPIKGVFNNSSAISLDGNDNLC-----------GGISELHL 219 (248)
Q Consensus 162 ~l~~n~--i~~~-------~p~~L~~L~l~~n~l~~~--~~~~~~~~~l~~l~l~~n~~~~-----------~~l~~l~~ 219 (248)
++++|. +++. ..+.|++|++++|++++. ......+++|++|++++|+ +. ..+..+++
T Consensus 442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEE
T ss_pred EEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeEC
Confidence 776433 4321 123477777777766542 1133556667777777775 22 24556666
Q ss_pred CCCCcc
Q 039116 220 STCSIK 225 (248)
Q Consensus 220 ~~c~~~ 225 (248)
++|.+.
T Consensus 521 s~n~it 526 (592)
T 3ogk_B 521 QGYRAS 526 (592)
T ss_dssp ESCBCC
T ss_pred cCCcCC
Confidence 666644
No 131
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.50 E-value=1.9e-15 Score=133.61 Aligned_cols=206 Identities=14% Similarity=0.071 Sum_probs=143.7
Q ss_pred CchhhhcccCCccEEEccccccccCch-hhhhcCcCCcEEEcCCCcCCCC-CChhhcCCccccEEEecC-----------
Q 039116 2 LPEAVGSLSTQLKILSVENNQFFGNIP-SGLRNLVNLELLHLGDNQFKGQ-IPGTIGDLLKLQRLTLQG----------- 68 (248)
Q Consensus 2 lp~~~~~~~~~L~~L~l~~~~i~~~~p-~~~~~l~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~----------- 68 (248)
+|..+..++ +|++|++++|.+..... ..+.++++|++|++. +.+... .+..+..+++|++|++++
T Consensus 285 l~~~~~~~~-~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~ 362 (592)
T 3ogk_B 285 MPILFPFAA-QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362 (592)
T ss_dssp GGGGGGGGG-GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred HHHHHhhcC-CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence 355555666 99999999999764433 446889999999999 444422 333345688999999993
Q ss_pred ccccccCC-cccCCCCCccEEEcccccccccCCccccC-CCCCcEEEcc----cCcCccc-----cchhhhhccccccEE
Q 039116 69 NKFLGEIP-PSIGNLTLLTTLNFGENMLEESIPSSLGK-CQNIALLDLS----NNNLSGT-----IPTEVIRLSSLSIYL 137 (248)
Q Consensus 69 n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~----~n~i~~~-----~~~~~~~~~~ll~~L 137 (248)
+.++.... .....+++|+.|++..+.+++..+..+.. +++|+.|++. .|.+++. ++..+..++++ ++|
T Consensus 363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L-~~L 441 (592)
T 3ogk_B 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL-RRF 441 (592)
T ss_dssp CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC-CEE
T ss_pred CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC-CEE
Confidence 44442211 22345889999999888887655555554 7899999996 5667632 33446678888 899
Q ss_pred EcccCc--CCCCCCcCcc-CCCCccEEEecCCcCCCcc-------CCCCceEEccCCcceeecc--CCcccCCCceeeec
Q 039116 138 DLSQNQ--LNGPFPSNFG-VLKNLGVIDISENKLSDDI-------PNSLENLNLSFNHFEGEVP--IKGVFNNSSAISLD 205 (248)
Q Consensus 138 ~l~~n~--i~~~~~~~~~-~~~~L~~L~l~~n~i~~~~-------p~~L~~L~l~~n~l~~~~~--~~~~~~~l~~l~l~ 205 (248)
+++.|. +++.....+. .+++|+.|++++|.+++.. -+.|++|++++|.+++... ....+++|+.|+++
T Consensus 442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls 521 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521 (592)
T ss_dssp EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEE
T ss_pred EEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECc
Confidence 997543 5433333333 4788999999999987521 2459999999999875422 44678999999999
Q ss_pred CCccce
Q 039116 206 GNDNLC 211 (248)
Q Consensus 206 ~n~~~~ 211 (248)
+|. +.
T Consensus 522 ~n~-it 526 (592)
T 3ogk_B 522 GYR-AS 526 (592)
T ss_dssp SCB-CC
T ss_pred CCc-CC
Confidence 996 44
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.7e-13 Score=102.15 Aligned_cols=106 Identities=24% Similarity=0.326 Sum_probs=88.9
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
..+.++++++.++ .+|..+. +.|+.|++++|++++..+..|.++++|++|++++|+++...+..+..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4678999999887 5666553 788999999999997778888889999999999999887766677889999999999
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCc
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLS 120 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~ 120 (248)
+|.+++..+..+..+++|+.|++.+|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 99998766667888899999999998886
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=6.5e-16 Score=118.13 Aligned_cols=138 Identities=20% Similarity=0.278 Sum_probs=107.0
Q ss_pred hhhcCcCCcEEEcCCCcCCCCCCh------hhcCCccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccc
Q 039116 30 GLRNLVNLELLHLGDNQFKGQIPG------TIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSL 103 (248)
Q Consensus 30 ~~~~l~~L~~L~l~~~~i~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 103 (248)
.+.....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.++. +|..+
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~ 89 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLD 89 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHH
T ss_pred HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchh
Confidence 355667777777777777766555 88889999999999999885 55 77788999999999998884 67777
Q ss_pred cCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCC-cCccCCCCccEEEecCCcCCCccC
Q 039116 104 GKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFP-SNFGVLKNLGVIDISENKLSDDIP 173 (248)
Q Consensus 104 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~i~~~~p 173 (248)
..+++|+.|++.+|+++ .+| .+..++++ ++|++++|.+++..+ ..+..+++|+.|++++|++++..|
T Consensus 90 ~~~~~L~~L~L~~N~l~-~l~-~~~~l~~L-~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 90 AVADTLEELWISYNQIA-SLS-GIEKLVNL-RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHHCSEEEEEEEECC-CHH-HHHHHHHS-SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred hcCCcCCEEECcCCcCC-cCC-ccccCCCC-CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 77788999999999887 455 57788888 889999998874322 356778888888888888765444
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=3e-13 Score=101.18 Aligned_cols=106 Identities=24% Similarity=0.380 Sum_probs=86.0
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
.-+.++++++.+. .+|..+. ++|+.|++++|++++..|..|.++++|++|++++|++++..+..+..+++|+.|+++
T Consensus 13 ~~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 13 DQTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp CSSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 4567888888886 6676554 788899999999887778888888899999999998886655667888889999999
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCc
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLS 120 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~ 120 (248)
+|.++...+..+..+++|+.|++.+|.+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 88888755555888888888988888876
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=3.5e-13 Score=110.92 Aligned_cols=203 Identities=14% Similarity=0.108 Sum_probs=128.0
Q ss_pred CccEEEccccccc--------------------cCchhhhhc--------CcCCcEEEcCCCcCCCCCChhhcCCccccE
Q 039116 12 QLKILSVENNQFF--------------------GNIPSGLRN--------LVNLELLHLGDNQFKGQIPGTIGDLLKLQR 63 (248)
Q Consensus 12 ~L~~L~l~~~~i~--------------------~~~p~~~~~--------l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 63 (248)
+|+.|+|++|.+. .....+|.+ +++|+.+++.+ .++.+.+.+|.++++|+.
T Consensus 50 ~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~ 128 (329)
T 3sb4_A 50 SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKI 128 (329)
T ss_dssp TCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCE
T ss_pred cCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccce
Confidence 8999999999987 122345566 77777777777 676666677777777888
Q ss_pred EEecCccccccCCcccCCCCCccEEEcccccc----cccCCccccCCCCCc--------------------------EEE
Q 039116 64 LTLQGNKFLGEIPPSIGNLTLLTTLNFGENML----EESIPSSLGKCQNIA--------------------------LLD 113 (248)
Q Consensus 64 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~----~~~~~~~l~~l~~L~--------------------------~L~ 113 (248)
+++..|.+..+.+..|..+.++..+....+.. .......+..+..|+ .+.
T Consensus 129 l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~ 208 (329)
T 3sb4_A 129 CQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLT 208 (329)
T ss_dssp EEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEE
T ss_pred EEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEE
Confidence 87777777656666676666666665544211 111122233333333 222
Q ss_pred cccCcCccccchhh-hhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCccCC-------CCc-eEEccCC
Q 039116 114 LSNNNLSGTIPTEV-IRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIPN-------SLE-NLNLSFN 184 (248)
Q Consensus 114 l~~n~i~~~~~~~~-~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p~-------~L~-~L~l~~n 184 (248)
+.++-.. .....+ ..++++ +.+++++|.++.+...+|..+++|+.+++.+| ++ .+++ .|+ ++++.+
T Consensus 209 ~~~~l~~-~~~~~l~~~~~~L-~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 209 IEGKLDN-ADFKLIRDYMPNL-VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEECCCH-HHHHHHHHHCTTC-CEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-
T ss_pred EeeeecH-HHHHHHHHhcCCC-eEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-
Confidence 2221100 001111 135677 89999998888677778889999999999987 55 3332 388 888887
Q ss_pred cceeecc-CCcccCCCceeeecCCccceeccCccccCCC
Q 039116 185 HFEGEVP-IKGVFNNSSAISLDGNDNLCGGISELHLSTC 222 (248)
Q Consensus 185 ~l~~~~~-~~~~~~~l~~l~l~~n~~~~~~l~~l~~~~c 222 (248)
.++...+ .+..+++|+.+++.+|. +. .|+.-.+++|
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~-i~-~I~~~aF~~~ 320 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDK-IT-TLGDELFGNG 320 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSC-CC-EECTTTTCTT
T ss_pred cceEEchhhhhCCccCCEEEeCCCc-cC-ccchhhhcCC
Confidence 6665544 67788889999987763 22 3555556666
No 136
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.42 E-value=9.6e-15 Score=129.14 Aligned_cols=195 Identities=14% Similarity=0.054 Sum_probs=95.9
Q ss_pred CccEEEccccccccCch-hhhhcCcCCcEEEcCCCcCCCCC-ChhhcCCccccEEEecC---------ccccccCCccc-
Q 039116 12 QLKILSVENNQFFGNIP-SGLRNLVNLELLHLGDNQFKGQI-PGTIGDLLKLQRLTLQG---------NKFLGEIPPSI- 79 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p-~~~~~l~~L~~L~l~~~~i~~~~-~~~~~~l~~L~~L~l~~---------n~l~~~~~~~l- 79 (248)
+|++|++++|.+..... ..+.++++|++|++.+| ++... +.....+++|++|++.+ +.+++.....+
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 56666666665442222 22345566666666655 32111 11112355666666532 22221111111
Q ss_pred CCCCCccEEEcccccccccCCcccc-CCCCCcEEEcc--c----CcCcc-----ccchhhhhccccccEEEcccCcCCCC
Q 039116 80 GNLTLLTTLNFGENMLEESIPSSLG-KCQNIALLDLS--N----NNLSG-----TIPTEVIRLSSLSIYLDLSQNQLNGP 147 (248)
Q Consensus 80 ~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~--~----n~i~~-----~~~~~~~~~~~ll~~L~l~~n~i~~~ 147 (248)
..+++|+.|.+..+.++......+. .+++|+.|++. + +.++. .++..+..++++ ++|++++ .+++.
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L-~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL-RRLSLSG-LLTDK 446 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC-CEEECCS-SCCHH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCc-cEEeecC-cccHH
Confidence 1255666666555555543333332 35666666666 2 33331 111223445566 6666655 34332
Q ss_pred CCcCccC-CCCccEEEecCCcCCCcc-------CCCCceEEccCCcceeecc--CCcccCCCceeeecCCcc
Q 039116 148 FPSNFGV-LKNLGVIDISENKLSDDI-------PNSLENLNLSFNHFEGEVP--IKGVFNNSSAISLDGNDN 209 (248)
Q Consensus 148 ~~~~~~~-~~~L~~L~l~~n~i~~~~-------p~~L~~L~l~~n~l~~~~~--~~~~~~~l~~l~l~~n~~ 209 (248)
.+..++. +++|+.|++++|.+++.. -+.|++|++++|.+++... ....+++|+.|++++|+.
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 2223332 666777777777765421 2447777777777643322 344566777777777754
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=1.7e-12 Score=96.61 Aligned_cols=107 Identities=24% Similarity=0.272 Sum_probs=66.1
Q ss_pred ccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcc
Q 039116 61 LQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLS 140 (248)
Q Consensus 61 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~ 140 (248)
.+.+++++|.++ .+|..+ .++|+.|++++|.+++..+..+..+++|+.|++.+|++++..+..+..++++ ++|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L-~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL-TQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECC
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC-CEEECC
Confidence 445555555555 334333 2556666666666665555566666666666666666663333334566666 777777
Q ss_pred cCcCCCCCCcCccCCCCccEEEecCCcCCCc
Q 039116 141 QNQLNGPFPSNFGVLKNLGVIDISENKLSDD 171 (248)
Q Consensus 141 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 171 (248)
+|.+++..+..+..+++|+.|++++|+++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 7777755555677777778888887777643
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=4.5e-12 Score=94.74 Aligned_cols=104 Identities=26% Similarity=0.320 Sum_probs=66.8
Q ss_pred cEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchh-hhhccccccEEEcc
Q 039116 62 QRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTE-VIRLSSLSIYLDLS 140 (248)
Q Consensus 62 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-~~~~~~ll~~L~l~ 140 (248)
..++++++++. .+|..+. ++|+.|++++|.+++..+..+..+++|+.|++.+|+++ .+|.. +..+++| ++|+++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L-~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQL-TQLDLN 89 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC-CEEECC
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchh-hEEECC
Confidence 45566666554 3444332 56666666666666655666666677777777777776 34433 4566777 777777
Q ss_pred cCcCCCCCCcCccCCCCccEEEecCCcCCC
Q 039116 141 QNQLNGPFPSNFGVLKNLGVIDISENKLSD 170 (248)
Q Consensus 141 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 170 (248)
+|.+++..+..+..+++|+.|++++|++..
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 777775444457777788888888887763
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.36 E-value=3.1e-12 Score=105.26 Aligned_cols=157 Identities=11% Similarity=0.091 Sum_probs=122.7
Q ss_pred ccCCccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccc----cccCCccc-----
Q 039116 9 LSTQLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKF----LGEIPPSI----- 79 (248)
Q Consensus 9 ~~~~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~l----- 79 (248)
+. +|+.|++.+ .++.....+|.++++|+.+++.+|.+..+.+.+|.++.++..+....+.. .......+
T Consensus 100 ~~-~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQ-TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CT-TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cC-CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 56 999999998 88877778899999999999999999877888888877777776554211 00000000
Q ss_pred ---------------------------------------------CCCCCccEEEcccccccccCCccccCCCCCcEEEc
Q 039116 80 ---------------------------------------------GNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDL 114 (248)
Q Consensus 80 ---------------------------------------------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 114 (248)
..+++|+.+++..|.++......|..+.+|+.+++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 02689999999999998877778999999999999
Q ss_pred ccCcCccccchhhhhcccccc-EEEcccCcCCCCCCcCccCCCCccEEEecCCcCCC
Q 039116 115 SNNNLSGTIPTEVIRLSSLSI-YLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSD 170 (248)
Q Consensus 115 ~~n~i~~~~~~~~~~~~~ll~-~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 170 (248)
..| ++..-...+..+..| + .+++.+ .++.+.+.+|..+++|+.+++++|.++.
T Consensus 258 ~~n-i~~I~~~aF~~~~~L-~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRL-AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp CTT-CCEECTTTTTTCTTC-CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred Ccc-cceehHHHhhCChhc-cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 887 764444556788888 8 999988 6766778899999999999999999874
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=6e-14 Score=117.36 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=73.1
Q ss_pred CccEEEccccccccCchhhhhcC-----cCCcEEEcCCCcCCCCCChhhc-CCccccEEEecCccccccCCccc-----C
Q 039116 12 QLKILSVENNQFFGNIPSGLRNL-----VNLELLHLGDNQFKGQIPGTIG-DLLKLQRLTLQGNKFLGEIPPSI-----G 80 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l-----~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l-----~ 80 (248)
.|+.|++++|.+.......+... ++|+.|++++|.++......+. .+++|+.|++++|.+.......+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 56666666666654333333222 4566666666665532222221 23456666666665543222222 2
Q ss_pred CCCCccEEEccccccccc----CCccccCCCCCcEEEcccCcCccc----cchhhhhccccccEEEcccCcCCCCC----
Q 039116 81 NLTLLTTLNFGENMLEES----IPSSLGKCQNIALLDLSNNNLSGT----IPTEVIRLSSLSIYLDLSQNQLNGPF---- 148 (248)
Q Consensus 81 ~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~i~~~----~~~~~~~~~~ll~~L~l~~n~i~~~~---- 148 (248)
..++|++|++++|.++.. ++..+...++|++|++.+|.+++. +...+...+.+ ++|++++|.+++..
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L-~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL-QELNVAYNGAGDTAALAL 231 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCC-CEEECCSSCCCHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCc-CeEECCCCCCCHHHHHHH
Confidence 345566666666555431 122234455555555555555421 12223333444 55555555554221
Q ss_pred CcCccCCCCccEEEecCCcCC
Q 039116 149 PSNFGVLKNLGVIDISENKLS 169 (248)
Q Consensus 149 ~~~~~~~~~L~~L~l~~n~i~ 169 (248)
...+...++|+.|++++|.++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 112223445555555555554
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.30 E-value=4.5e-13 Score=118.41 Aligned_cols=127 Identities=17% Similarity=0.192 Sum_probs=59.3
Q ss_pred CccEEEccccccccCchhhhh-cCcCCcEEEcCCC-cCCCC-CChhhcCCccccEEEecCccccccCCccc----CCCCC
Q 039116 12 QLKILSVENNQFFGNIPSGLR-NLVNLELLHLGDN-QFKGQ-IPGTIGDLLKLQRLTLQGNKFLGEIPPSI----GNLTL 84 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~-~l~~L~~L~l~~~-~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~l~~ 84 (248)
+|++|+++++.+....+..+. .+++|++|++++| .++.. .+..+.++++|++|++++|.+.+..+..+ ..+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 556666665555544444443 4556666666555 33321 22222345566666666655443322222 24455
Q ss_pred ccEEEccccc--cccc-CCccccCCCCCcEEEcccC-cCccccchhhhhccccccEEEcc
Q 039116 85 LTTLNFGENM--LEES-IPSSLGKCQNIALLDLSNN-NLSGTIPTEVIRLSSLSIYLDLS 140 (248)
Q Consensus 85 L~~L~l~~n~--~~~~-~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~~~~ll~~L~l~ 140 (248)
|+.|++++|. +... .......+++|+.|++.+| .+. .++..+..++++ ++|+++
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L-~~L~l~ 243 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQL-EELGTG 243 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTC-SEEECS
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcc-eEcccc
Confidence 6666665554 1100 0111123456666666555 222 244444455555 555543
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=1.3e-11 Score=102.10 Aligned_cols=104 Identities=20% Similarity=0.146 Sum_probs=86.5
Q ss_pred cEEEcccc-ccccCchhhhhcCcCCcEEEcCC-CcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 14 KILSVENN-QFFGNIPSGLRNLVNLELLHLGD-NQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 14 ~~L~l~~~-~i~~~~p~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
..++++++ +++ .+|. +..+++|+.|++++ |.+++..+..|.++++|+.|++++|.+++..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788887 777 5777 88888999999986 99987777888899999999999999988888888899999999999
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCc
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLS 120 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~ 120 (248)
+|.+++..+..+..+. |+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9999875555555555 999999998886
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.25 E-value=2.2e-10 Score=96.70 Aligned_cols=148 Identities=13% Similarity=0.112 Sum_probs=78.4
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+|+.+.+..+ ++..-..+|.+ .+|+.+.+.. .++.+...+|.++++|+.+++..|.+.......|. ..+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 6777777654 44444555655 3577777765 45545566677777777777776666544444444 3566666665
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcC
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKL 168 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i 168 (248)
.+ ++.....+|..+++|+.+.+..+ ++ .+....+....+ +.+.+. +.++.....+|..+++|+.+.+.+|.+
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~~~L-~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRESGI-TTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTF 283 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTTCCC-SEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCC
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-cc-CccccccccCCc-cEEEeC-CCccEEChhHhhCCCCCCEEEeCCccc
Confidence 33 44444455566666666666543 33 222222222334 455552 223323344455555555555555443
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.24 E-value=3.3e-10 Score=95.56 Aligned_cols=186 Identities=11% Similarity=0.075 Sum_probs=141.4
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
+|+.+.+.+ .+...-..+|.++++|+.+++.+|.++.+...+|. ..+|+.+.+..+ +..+....|..+++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 799999986 66656678899999999999999999976667776 589999999855 665777889999999999998
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCC-----CCCCcCccCCCCccEEEecCC
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLN-----GPFPSNFGVLKNLGVIDISEN 166 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~-----~~~~~~~~~~~~L~~L~l~~n 166 (248)
.+ ++.....+|.. .+|+.+.+. +.++..-...+..+++| +.+++.++.+. .....+|..+++|+.+.+..
T Consensus 235 ~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L-~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPEL-AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp TT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTC-CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred CC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCC-CEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 75 55445566766 789999994 45663445566778888 89999887664 35567888999999999984
Q ss_pred cCCCccC-------CCCceEEccCCcceeecc-CCcccCCCceeeecCCc
Q 039116 167 KLSDDIP-------NSLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGND 208 (248)
Q Consensus 167 ~i~~~~p-------~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~ 208 (248)
.++ .++ ..|+++.+.++ ++.... .+..+ +|+.+++.+|.
T Consensus 310 ~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 310 SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 454 222 34888998655 554433 55666 89999998874
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=2.6e-13 Score=113.55 Aligned_cols=155 Identities=21% Similarity=0.187 Sum_probs=111.4
Q ss_pred CcCCcEEEcCCCcCCCCCChhhcCC-----ccccEEEecCccccccCCcccC-CCCCccEEEcccccccccCCccc----
Q 039116 34 LVNLELLHLGDNQFKGQIPGTIGDL-----LKLQRLTLQGNKFLGEIPPSIG-NLTLLTTLNFGENMLEESIPSSL---- 103 (248)
Q Consensus 34 l~~L~~L~l~~~~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~l---- 103 (248)
++.|+.|++++|.++......+... ++|+.|++++|.+.......+. .+++|+.|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4679999999999885444444332 6899999999987643333332 35689999999998875433333
Q ss_pred -cCCCCCcEEEcccCcCcc----ccchhhhhccccccEEEcccCcCCCCC----CcCccCCCCccEEEecCCcCCCcc--
Q 039116 104 -GKCQNIALLDLSNNNLSG----TIPTEVIRLSSLSIYLDLSQNQLNGPF----PSNFGVLKNLGVIDISENKLSDDI-- 172 (248)
Q Consensus 104 -~~l~~L~~L~l~~n~i~~----~~~~~~~~~~~ll~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~~-- 172 (248)
...++|+.|++.+|.++. .+...+...+.+ ++|++++|.+++.. +..+...++|+.|++++|.+++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L-~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSV-THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSC-CEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCc-CEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 346789999999999863 233344567788 89999999887432 445566788999999999997521
Q ss_pred --------CCCCceEEccCCcceee
Q 039116 173 --------PNSLENLNLSFNHFEGE 189 (248)
Q Consensus 173 --------p~~L~~L~l~~n~l~~~ 189 (248)
.+.|++|++++|.+++.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHH
Confidence 24599999999988754
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=2.7e-11 Score=100.21 Aligned_cols=94 Identities=22% Similarity=0.173 Sum_probs=83.3
Q ss_pred CCchhhhcccCCccEEEccc-cccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCccc
Q 039116 1 MLPEAVGSLSTQLKILSVEN-NQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSI 79 (248)
Q Consensus 1 ~lp~~~~~~~~~L~~L~l~~-~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 79 (248)
.||. +..+. +|+.|+|++ |.+.+..+..|.++++|+.|++++|++++..|..|.++++|+.|++++|.+.+..+..+
T Consensus 23 ~ip~-l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH-LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp TTTT-SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred ccCC-CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence 3677 77777 899999996 99997777899999999999999999998889999999999999999999996666666
Q ss_pred CCCCCccEEEcccccccc
Q 039116 80 GNLTLLTTLNFGENMLEE 97 (248)
Q Consensus 80 ~~l~~L~~L~l~~n~~~~ 97 (248)
..++ |+.|++.+|.+..
T Consensus 101 ~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 101 QGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSCC-CCEEECCSSCCCC
T ss_pred ccCC-ceEEEeeCCCccC
Confidence 6666 9999999999874
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=8e-10 Score=91.88 Aligned_cols=155 Identities=20% Similarity=0.280 Sum_probs=73.6
Q ss_pred hhhcCcCCcEEEcCCCcCC---------CCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcccccccccCC
Q 039116 30 GLRNLVNLELLHLGDNQFK---------GQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIP 100 (248)
Q Consensus 30 ~~~~l~~L~~L~l~~~~i~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 100 (248)
+...+++|+.|.+.+.... ......+..+|+|+.|.++++.-. .++. + .+++|+.|++..+.+.....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH
Confidence 3445566666666443221 012233445566666666655211 1121 2 25666666666655543222
Q ss_pred cccc--CCCCCcEEEccc--CcCcc-----ccchhh--hhccccccEEEcccCcCCCCCCcCc---cCCCCccEEEecCC
Q 039116 101 SSLG--KCQNIALLDLSN--NNLSG-----TIPTEV--IRLSSLSIYLDLSQNQLNGPFPSNF---GVLKNLGVIDISEN 166 (248)
Q Consensus 101 ~~l~--~l~~L~~L~l~~--n~i~~-----~~~~~~--~~~~~ll~~L~l~~n~i~~~~~~~~---~~~~~L~~L~l~~n 166 (248)
..+. .+++|+.|++.. +...+ .+...+ ..+++| ++|++.+|.+.+..+..+ ..+++|+.|+++.|
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~L-r~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNL-KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTC-CEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCc-CEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 2222 456666666532 11100 011111 234566 666666666543211111 13566777777777
Q ss_pred cCCCc----cC------CCCceEEccCCccee
Q 039116 167 KLSDD----IP------NSLENLNLSFNHFEG 188 (248)
Q Consensus 167 ~i~~~----~p------~~L~~L~l~~n~l~~ 188 (248)
.+++. ++ +.|++|++++|.++.
T Consensus 290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 66541 11 346777777776653
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=3.1e-08 Score=82.27 Aligned_cols=177 Identities=16% Similarity=0.153 Sum_probs=117.6
Q ss_pred hhhhcccCCccEEEccccccc---------cCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCcccccc
Q 039116 4 EAVGSLSTQLKILSVENNQFF---------GNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGE 74 (248)
Q Consensus 4 ~~~~~~~~~L~~L~l~~~~i~---------~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 74 (248)
.++..++ +|+.|.+.+.... +.+...+..+|+|+.|.++++.-. ..+. + .+++|++|++..+.+...
T Consensus 133 ~s~~~l~-~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 133 ENKEKFA-HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp TTHHHHT-TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHH
T ss_pred Hhhhhcc-hhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChH
Confidence 4456677 9999999764321 135566688899999999887312 2232 3 378999999998887643
Q ss_pred CCcccC--CCCCccEEEccc--cccccc-----CCccc--cCCCCCcEEEcccCcCccccchhhh---hccccccEEEcc
Q 039116 75 IPPSIG--NLTLLTTLNFGE--NMLEES-----IPSSL--GKCQNIALLDLSNNNLSGTIPTEVI---RLSSLSIYLDLS 140 (248)
Q Consensus 75 ~~~~l~--~l~~L~~L~l~~--n~~~~~-----~~~~l--~~l~~L~~L~l~~n~i~~~~~~~~~---~~~~ll~~L~l~ 140 (248)
....+. .+|+|+.|++.. +...+. +...+ ..+++|+.|++.+|.+....+..+. .+++| ++|+++
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L-~~LdLs 287 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL-ETMDIS 287 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGC-SEEECC
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCC-CEEECC
Confidence 323333 689999999863 221110 11222 3478999999999988744433343 46788 999999
Q ss_pred cCcCCCCC----CcCccCCCCccEEEecCCcCCCccCC----C-CceEEccCCc
Q 039116 141 QNQLNGPF----PSNFGVLKNLGVIDISENKLSDDIPN----S-LENLNLSFNH 185 (248)
Q Consensus 141 ~n~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~~p~----~-L~~L~l~~n~ 185 (248)
.|.+++.. +..+..+++|+.|++++|.+++..-. . ...+++++++
T Consensus 288 ~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp SSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHCCSEEECCSBC
T ss_pred CCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHcCCEEEecCCc
Confidence 99987532 33335679999999999998753221 1 2456666664
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=1.2e-08 Score=76.84 Aligned_cols=116 Identities=14% Similarity=0.171 Sum_probs=64.5
Q ss_pred hhhhcCcCCcEEEcCCC-cCCCC----CChhhcCCccccEEEecCcccccc----CCcccCCCCCccEEEccccccccc-
Q 039116 29 SGLRNLVNLELLHLGDN-QFKGQ----IPGTIGDLLKLQRLTLQGNKFLGE----IPPSIGNLTLLTTLNFGENMLEES- 98 (248)
Q Consensus 29 ~~~~~l~~L~~L~l~~~-~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~- 98 (248)
..+...+.|++|++++| .+... +...+...++|++|++++|.+... +...+...++|++|++++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34455566666666666 66532 223344455666666666665432 122334456677777777766543
Q ss_pred ---CCccccCCCCCcEEEc--ccCcCccc----cchhhhhccccccEEEcccCcCC
Q 039116 99 ---IPSSLGKCQNIALLDL--SNNNLSGT----IPTEVIRLSSLSIYLDLSQNQLN 145 (248)
Q Consensus 99 ---~~~~l~~l~~L~~L~l--~~n~i~~~----~~~~~~~~~~ll~~L~l~~n~i~ 145 (248)
+...+...++|++|++ .+|.+... +...+...+.+ ++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L-~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTL-LKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSC-CEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCc-CEEeccCCCCC
Confidence 2344555566777777 66766532 22333444566 67777777654
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=2.2e-08 Score=75.26 Aligned_cols=16 Identities=0% Similarity=-0.031 Sum_probs=7.5
Q ss_pred cCcCCcEEEcCCCcCC
Q 039116 33 NLVNLELLHLGDNQFK 48 (248)
Q Consensus 33 ~l~~L~~L~l~~~~i~ 48 (248)
..+.|++|++++|.++
T Consensus 63 ~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSN 78 (185)
T ss_dssp TCCSCCEEECTTSCCC
T ss_pred hCCCcCEEECcCCCCC
Confidence 3344444555444444
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.39 E-value=1.3e-07 Score=70.08 Aligned_cols=84 Identities=11% Similarity=0.056 Sum_probs=52.6
Q ss_pred cCCcEEEcCCCcCCCCCChhhcCCccccEEEecCcc-ccccCCcccCCC----CCccEEEccccc-ccccCCccccCCCC
Q 039116 35 VNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNK-FLGEIPPSIGNL----TLLTTLNFGENM-LEESIPSSLGKCQN 108 (248)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l----~~L~~L~l~~n~-~~~~~~~~l~~l~~ 108 (248)
..|+.|+++++.+++..-..+.++++|++|++++|. +++..-..++.+ ++|+.|++++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357777777777665545556667777777777764 443322334443 357777777764 66544455667778
Q ss_pred CcEEEcccCc
Q 039116 109 IALLDLSNNN 118 (248)
Q Consensus 109 L~~L~l~~n~ 118 (248)
|+.|++.++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888887764
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=1.4e-07 Score=74.79 Aligned_cols=79 Identities=25% Similarity=0.355 Sum_probs=44.7
Q ss_pred CCccccEEEecCccccc--cCCcccCCCCCccEEEcccccccccCCccccCCC--CCcEEEcccCcCccccc-------h
Q 039116 57 DLLKLQRLTLQGNKFLG--EIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQ--NIALLDLSNNNLSGTIP-------T 125 (248)
Q Consensus 57 ~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~n~i~~~~~-------~ 125 (248)
++++|+.|++++|.+.+ .++..+..+++|+.|++++|.+++. ..+..+. +|++|++.+|.+.+..| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45666666666666654 2234444566666666666666642 2222222 67777777777764443 1
Q ss_pred hhhhccccccEEE
Q 039116 126 EVIRLSSLSIYLD 138 (248)
Q Consensus 126 ~~~~~~~ll~~L~ 138 (248)
.+..+++| +.||
T Consensus 246 il~~~P~L-~~LD 257 (267)
T 3rw6_A 246 IRERFPKL-LRLD 257 (267)
T ss_dssp HHHHCTTC-CEES
T ss_pred HHHHCccc-CeEC
Confidence 24556666 5554
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=9.3e-07 Score=70.05 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=69.5
Q ss_pred CccE--EEccccccccCchh----hhhcCcCCcEEEcCCCcCCCC--CChhhcCCccccEEEecCccccccCCcccCCCC
Q 039116 12 QLKI--LSVENNQFFGNIPS----GLRNLVNLELLHLGDNQFKGQ--IPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLT 83 (248)
Q Consensus 12 ~L~~--L~l~~~~i~~~~p~----~~~~l~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 83 (248)
.|+. ++++.|... ..+. ...++++|+.|++++|++++. ++..+..+++|+.|++++|.+.+. ..+..+.
T Consensus 142 ~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~ 218 (267)
T 3rw6_A 142 DLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIK 218 (267)
T ss_dssp HHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGT
T ss_pred chhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcc
Confidence 4444 566666433 2222 225688999999999999863 346667899999999999998754 2233333
Q ss_pred --CccEEEcccccccccCCc-------cccCCCCCcEEE
Q 039116 84 --LLTTLNFGENMLEESIPS-------SLGKCQNIALLD 113 (248)
Q Consensus 84 --~L~~L~l~~n~~~~~~~~-------~l~~l~~L~~L~ 113 (248)
+|++|++.+|.+.+..+. .+..+++|+.|+
T Consensus 219 ~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 219 GLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 899999999998765442 356788888876
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=1.6e-06 Score=64.07 Aligned_cols=84 Identities=8% Similarity=0.082 Sum_probs=50.7
Q ss_pred CCccEEEcccccccccCCccccCCCCCcEEEcccCc-Cccccchhhhhc----cccccEEEcccCc-CCCCCCcCccCCC
Q 039116 83 TLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNN-LSGTIPTEVIRL----SSLSIYLDLSQNQ-LNGPFPSNFGVLK 156 (248)
Q Consensus 83 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~~----~~ll~~L~l~~n~-i~~~~~~~~~~~~ 156 (248)
..|+.||++++.++......+..+++|++|++.+|. +++.--..+... +.| ++|++++|. +++..-..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L-~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM-LEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHC-CEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCC-CEEEcCCCCcCCHHHHHHHhcCC
Confidence 346666666666665445556667777777777764 553333334332 345 777777764 6543334455677
Q ss_pred CccEEEecCCc
Q 039116 157 NLGVIDISENK 167 (248)
Q Consensus 157 ~L~~L~l~~n~ 167 (248)
+|+.|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777777775
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.12 E-value=3.2e-05 Score=64.76 Aligned_cols=73 Identities=21% Similarity=0.138 Sum_probs=32.7
Q ss_pred ccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCccC-------CCCceEEccCCcceeecc-CCcccCCCce
Q 039116 130 LSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDDIP-------NSLENLNLSFNHFEGEVP-IKGVFNNSSA 201 (248)
Q Consensus 130 ~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~p-------~~L~~L~l~~n~l~~~~~-~~~~~~~l~~ 201 (248)
+..+ +.+.+..+ ++.....+|..+.+|+.+++..+ ++ .+. ..|+++++..+ ++.... .+..+.+|+.
T Consensus 296 ~~~L-~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 296 CSSL-TEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK 370 (394)
T ss_dssp CTTC-CEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred cccc-cccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence 3444 44544433 33233445555566666665433 22 111 12555555444 332222 3444555665
Q ss_pred eeecCC
Q 039116 202 ISLDGN 207 (248)
Q Consensus 202 l~l~~n 207 (248)
+++..+
T Consensus 371 i~lp~~ 376 (394)
T 4fs7_A 371 VELPKR 376 (394)
T ss_dssp EEEEGG
T ss_pred EEECCC
Confidence 555443
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.03 E-value=0.00012 Score=61.31 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=19.3
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCC
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDN 45 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~ 45 (248)
.|+.+.+.++ ++..-..+|.++.+|+.+.+..+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n 97 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDN 97 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGG
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCC
Confidence 4666666543 44444556666666666666443
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.89 E-value=0.0001 Score=61.72 Aligned_cols=161 Identities=14% Similarity=0.141 Sum_probs=93.5
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
.|+.+.+..+... ..+.+.....|+.+.+.... +.+...+|.++..++.+.+..+... .....+..+..++.+...
T Consensus 209 ~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 209 LLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYG 284 (394)
T ss_dssp TCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEEC
T ss_pred ccceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccC
Confidence 6666666544322 22233344667777776442 3244566777777888777766443 445566677777777665
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcCCCc
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKLSDD 171 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 171 (248)
...+. ...+..+.+|+.+.+..+ ++..-...+..+..| +.+++..+ ++.....+|..+.+|+.+.+..+ ++ .
T Consensus 285 ~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L-~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~ 356 (394)
T 4fs7_A 285 SVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL-VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-K 356 (394)
T ss_dssp SSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC-CEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-E
T ss_pred ceeec---cccccccccccccccccc-cceechhhhcCCCCC-CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-E
Confidence 54432 234566677777777543 442333345566667 77777543 54455667777777777777655 43 2
Q ss_pred cC-------CCCceEEccCC
Q 039116 172 IP-------NSLENLNLSFN 184 (248)
Q Consensus 172 ~p-------~~L~~L~l~~n 184 (248)
+. ..|+++++..+
T Consensus 357 I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 357 IGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECTTTBTTCTTCCEEEEEGG
T ss_pred ehHHHhhCCCCCCEEEECCC
Confidence 22 23666666443
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.84 E-value=6.2e-05 Score=63.01 Aligned_cols=114 Identities=12% Similarity=0.140 Sum_probs=65.9
Q ss_pred CCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCCcEEEcccCcCccccchhhhh
Q 039116 50 QIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIR 129 (248)
Q Consensus 50 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~ 129 (248)
+...+|.++..|+.+.+..+... +....+..++.|+.+.+.. .++......|..+.+|+.+.+..+ ++..-...+..
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 34456666666777666554332 4445566667777776642 333334455666677777776543 44233334555
Q ss_pred ccccccEEEcccCcCCCCCCcCccCCCCccEEEecCCcC
Q 039116 130 LSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISENKL 168 (248)
Q Consensus 130 ~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i 168 (248)
+.+| +.+.+..+ ++.....+|.++++|+.+++.++..
T Consensus 333 C~~L-~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 333 CEQL-ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CTTC-CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCCC-CEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 6666 66766543 4434456667777777777776643
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.78 E-value=0.00017 Score=59.88 Aligned_cols=149 Identities=16% Similarity=0.130 Sum_probs=101.4
Q ss_pred CccEEEccccccccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcc
Q 039116 12 QLKILSVENNQFFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFG 91 (248)
Q Consensus 12 ~L~~L~l~~~~i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 91 (248)
.+..+.+.... .......+.....|+.+.+..+ +..+...+|.++..|+.+.+..+ ++.+....+..+.+|+.+.+.
T Consensus 195 ~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~ 271 (379)
T 4h09_A 195 TGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFY 271 (379)
T ss_dssp CCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred cccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccc
Confidence 44445444332 2234456667778888888655 34355677888888888888765 444556678888888888886
Q ss_pred cccccccCCccccCCCCCcEEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCC
Q 039116 92 ENMLEESIPSSLGKCQNIALLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISEN 166 (248)
Q Consensus 92 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 166 (248)
.+ +.......+..+.+|+.+.+..+.++..-...+..+..| +.+.+..+ ++.+...+|..+.+|+.+.+..+
T Consensus 272 ~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L-~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 272 AK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL-SSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC-CEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cc-ceeccccccccccccccccccccccceehhhhhcCCCCC-CEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 54 444445667888889999988777763344556677888 88888654 55455678888888888877543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.75 E-value=0.00023 Score=59.11 Aligned_cols=131 Identities=9% Similarity=0.024 Sum_probs=94.7
Q ss_pred hhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEcccccccccCCccccCCCCCc
Q 039116 31 LRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENMLEESIPSSLGKCQNIA 110 (248)
Q Consensus 31 ~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 110 (248)
+.....+..+.+....-. ....++....+++.+.+..+ +.......+..+..|+.+.+..+ ++......+..+.+|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK 266 (379)
T ss_dssp CCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred ccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence 344455666666554333 45566777888999888665 33355667888999999998765 5545567788889999
Q ss_pred EEEcccCcCccccchhhhhccccccEEEcccCcCCCCCCcCccCCCCccEEEecCC
Q 039116 111 LLDLSNNNLSGTIPTEVIRLSSLSIYLDLSQNQLNGPFPSNFGVLKNLGVIDISEN 166 (248)
Q Consensus 111 ~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 166 (248)
.+.+..+ +...-...+..+.+| +.+.+.++.++.....+|..+.+|+.+.+..+
T Consensus 267 ~i~l~~~-i~~i~~~aF~~c~~L-~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 267 TLNFYAK-VKTVPYLLCSGCSNL-TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp EEEECCC-CSEECTTTTTTCTTC-CEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ccccccc-ceecccccccccccc-ccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 9998653 542333446677888 99999988887667788999999999999754
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.70 E-value=5.2e-05 Score=53.24 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=39.2
Q ss_pred EEEecCCcCC--C---ccCCCCceEEccCCcceeecc-CCcccCCCceeeecCCcccee
Q 039116 160 VIDISENKLS--D---DIPNSLENLNLSFNHFEGEVP-IKGVFNNSSAISLDGNDNLCG 212 (248)
Q Consensus 160 ~L~l~~n~i~--~---~~p~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~l~~n~~~~~ 212 (248)
.++.+++.++ . .+|..+++|+|++|+|+...+ .+..+++|+.+++++|||.|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 5566666554 2 345568888888888876655 567788999999999999984
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.31 E-value=0.00011 Score=55.28 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=37.5
Q ss_pred CcCCcEEEcCCC-cCCCC----CChhhcCCccccEEEecCccccccC----CcccCCCCCccEEEcccccccccC----C
Q 039116 34 LVNLELLHLGDN-QFKGQ----IPGTIGDLLKLQRLTLQGNKFLGEI----PPSIGNLTLLTTLNFGENMLEESI----P 100 (248)
Q Consensus 34 l~~L~~L~l~~~-~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~~----~ 100 (248)
-+.|++|+++++ .|... +.+++.....|+.|++++|.+.+.. .+.+..-+.|+.|++.+|.+.... .
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 344555555553 44421 1233333445555555555554221 122233445555555555554321 2
Q ss_pred ccccCCCCCcEEEccc
Q 039116 101 SSLGKCQNIALLDLSN 116 (248)
Q Consensus 101 ~~l~~l~~L~~L~l~~ 116 (248)
..+..-..|+.|++.+
T Consensus 120 ~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHTTTTCCCSEEECCC
T ss_pred HHHhhCCceeEEECCC
Confidence 2334444566666643
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.14 E-value=0.00024 Score=53.45 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=17.4
Q ss_pred hcCcCCcEEEcCCCcCCCCCC----hhhcCCccccEEEecCcccc
Q 039116 32 RNLVNLELLHLGDNQFKGQIP----GTIGDLLKLQRLTLQGNKFL 72 (248)
Q Consensus 32 ~~l~~L~~L~l~~~~i~~~~~----~~~~~l~~L~~L~l~~n~l~ 72 (248)
...+.|+.|++++|.|++... +.+.....|++|+++.|.+.
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 333445555555555442211 22223344555555555443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.83 E-value=0.0017 Score=45.37 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=17.5
Q ss_pred CCcEEEcCCCcCCCCCChhhcCCccccEEEecCcc
Q 039116 36 NLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQGNK 70 (248)
Q Consensus 36 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~ 70 (248)
+|++|+|++|+|+.+.+..|..+++|+.|++.+|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 35555555555554444444445555555555443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=73.87 E-value=8.3 Score=24.99 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=22.0
Q ss_pred cccCchhhhhcCcCCcEEEcCCCcCCCCCChhhcCCccccEEEecC
Q 039116 23 FFGNIPSGLRNLVNLELLHLGDNQFKGQIPGTIGDLLKLQRLTLQG 68 (248)
Q Consensus 23 i~~~~p~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 68 (248)
++..-..+|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33333445555555555555543 2224444555555555555544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=70.46 E-value=15 Score=23.75 Aligned_cols=49 Identities=14% Similarity=-0.008 Sum_probs=34.0
Q ss_pred CcCCCCCChhhcCCccccEEEecCccccccCCcccCCCCCccEEEccccc
Q 039116 45 NQFKGQIPGTIGDLLKLQRLTLQGNKFLGEIPPSIGNLTLLTTLNFGENM 94 (248)
Q Consensus 45 ~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 94 (248)
..++.+...+|.++.+|+.+.+-.+- +.+....|..+.+|+.+.+....
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCSC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCCC
Confidence 34555666778888888888777653 33556678888888888776543
Done!