BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039118
         (128 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4ADG|A Chain A, Crystal Structure Of The Rubella Virus Envelope
           Glycoprotein E1 In Post-fusion Form (crystal Form Ii)
 pdb|4ADG|B Chain B, Crystal Structure Of The Rubella Virus Envelope
           Glycoprotein E1 In Post-fusion Form (crystal Form Ii)
 pdb|4ADG|C Chain C, Crystal Structure Of The Rubella Virus Envelope
           Glycoprotein E1 In Post-fusion Form (crystal Form Ii)
 pdb|4ADI|A Chain A, Crystal Structure Of The Rubella Virus Envelope
           Glycoprotein E1 In Post-fusion Form (crystal Form I)
 pdb|4ADI|B Chain B, Crystal Structure Of The Rubella Virus Envelope
           Glycoprotein E1 In Post-fusion Form (crystal Form I)
 pdb|4ADI|C Chain C, Crystal Structure Of The Rubella Virus Envelope
           Glycoprotein E1 In Post-fusion Form (crystal Form I)
 pdb|4ADJ|A Chain A, Crystal Structure Of The Rubella Virus Glycoprotein E1 In
           Its Post-fusion Form Crystallized In Presence Of 1mm Of
           Calcium Acetate
 pdb|4ADJ|B Chain B, Crystal Structure Of The Rubella Virus Glycoprotein E1 In
           Its Post-fusion Form Crystallized In Presence Of 1mm Of
           Calcium Acetate
 pdb|4ADJ|C Chain C, Crystal Structure Of The Rubella Virus Glycoprotein E1 In
           Its Post-fusion Form Crystallized In Presence Of 1mm Of
           Calcium Acetate
 pdb|4B3V|A Chain A, Crystal Structure Of The Rubella Virus Glycoprotein E1 In
           Its Post-fusion Form Crystallized In Presence Of 20mm Of
           Calcium Acetate
 pdb|4B3V|B Chain B, Crystal Structure Of The Rubella Virus Glycoprotein E1 In
           Its Post-fusion Form Crystallized In Presence Of 20mm Of
           Calcium Acetate
 pdb|4B3V|C Chain C, Crystal Structure Of The Rubella Virus Glycoprotein E1 In
           Its Post-fusion Form Crystallized In Presence Of 20mm Of
           Calcium Acetate
          Length = 473

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 74  LEAMGTCLCTALEDIVLDVIKREIPSASLCLLWN 107
           LEA G C+C    D+  + +   +P+A    +WN
Sbjct: 43  LEATGACICEIPTDVSCEGLGAWVPTAPCARIWN 76


>pdb|1HYP|A Chain A, Crystal Structure Of Hydrophobic Protein From Soybean; A
           Member Of A New Cystine-Rich Family
          Length = 80

 Score = 27.3 bits (59), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 64  CCSLIGNMVQLEAMGTCLCTALEDIVLDVIKREIPSASLCLLWNYCESEIPPDFQC 119
           CC+LIG +  +EA+  CLC  L  + +  + R +      L+ N C    P +  C
Sbjct: 28  CCALIGGLGDIEAI-VCLCIQLRALGILNLNRNLQ-----LILNSCGRSYPSNATC 77


>pdb|1H6G|A Chain A, Alpha-Catenin M-Domain
 pdb|1H6G|B Chain B, Alpha-Catenin M-Domain
          Length = 256

 Score = 26.2 bits (56), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 33 QTACSGNFMELEECVDVFRALSRQRTPSKNFCCSLIGN 70
          + A +GN  E++E   VFR  + +     N  CS+  N
Sbjct: 30 EAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNN 67


>pdb|1L7C|A Chain A, Alpha-Catenin Fragment, Residues 385-651
 pdb|1L7C|B Chain B, Alpha-Catenin Fragment, Residues 385-651
 pdb|1L7C|C Chain C, Alpha-Catenin Fragment, Residues 385-651
          Length = 269

 Score = 26.2 bits (56), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 33 QTACSGNFMELEECVDVFRALSRQRTPSKNFCCSLIGN 70
          + A +GN  E++E   VFR  + +     N  CS+  N
Sbjct: 24 EAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNN 61


>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
 pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
          Length = 832

 Score = 25.4 bits (54), Expect = 9.7,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 22  LLASIPSSAAEQTACSGNFMELEECVDVFRALSRQRTPSKNFCCSLIGN 70
           L  ++P     + A +GN  E++E   VFR  + +     N  CS+  N
Sbjct: 314 LETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNN 362


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.134    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,430,141
Number of Sequences: 62578
Number of extensions: 114193
Number of successful extensions: 272
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 5
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)